Psyllid ID: psy3537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHcccEEcccccccccccccccEEccccEEEEccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MNDLNTMEMTLNFLNWPKTMVDAIvcdgfhydsddywkctikrrsssyyhlsstarmgdnILTSVVNYKLQVHglenvriadasvmpytvnANIHATCVMIGEKCADLIKQYWEKSV
Flexible Loop (DISEMBL)
MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV
Low Complexity Region (SEG)
MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV
Disordered region (IsUnstruct)
*******EMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW****
Disordered Region (DISOPRED)
**D*NT*EMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK**
Disordered Region (DISEMBL)
MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV
Disordered Region (DISPRO)
MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.837	0.156	0.366	2e-14
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.837	0.156	0.366	3e-14
Q8NE62	594	Choline dehydrogenase, mi	yes	N/A	0.769	0.151	0.404	1e-12
Q8BJ64	596	Choline dehydrogenase, mi	yes	N/A	0.709	0.139	0.428	3e-12
Q6UPE0	599	Choline dehydrogenase, mi	yes	N/A	0.709	0.138	0.416	7e-12
Q66D54	567	Choline dehydrogenase OS=	yes	N/A	0.726	0.149	0.372	9e-12
B2K8U4	567	Choline dehydrogenase OS=	yes	N/A	0.726	0.149	0.372	9e-12
P64264	528	Uncharacterized GMC-type	yes	N/A	0.555	0.123	0.515	2e-11
P64263	528	Uncharacterized GMC-type	yes	N/A	0.555	0.123	0.515	2e-11
B1JSR0	567	Choline dehydrogenase OS=	yes	N/A	0.726	0.149	0.360	2e-11

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 3/101 (2%)

Query: 18  KTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLE 76
           KT+V    C+   + SD YW+C +++ +    H + + +MG  +   +VVN++L+VHG+ 
Sbjct: 514 KTVVKG--CEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIR 571

Query: 77  NVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV 117
            +R+ D S+MP   + N HA  VMI EK A L+K+ W   V
Sbjct: 572 GLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAWGAKV 612

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 3/101 (2%)

Query: 18  KTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLE 76
           KT+V    C+   + SD YW+C +++ +    H + + +MG  +   +VVN++L+VHG+ 
Sbjct: 514 KTVVKG--CESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVR 571

Query: 77  NVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV 117
            +R+ D S+MP     N HA  VMI EK A L+K+ W   V
Sbjct: 572 GLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAWGAKV 612

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2 SV=2

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 58/94 (61%), Gaps = 4/94 (4%)

Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVRIADASVM 86
           G H  SD      ++ ++ S YH S T +MG  +  T+VV+ + +V G+EN+R+ DAS+M
Sbjct: 489 GSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIM 548

Query: 87  PYTVNANIHATCVMIGEKCADLIK---QYWEKSV 117
           P  V+ N++A  +MI EK AD+IK     W+K V
Sbjct: 549 PSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDV 582

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLENVRIADASVM 86
           G H  SD      ++ ++ S YH S T +MG  +  T+VV+ + +V G+EN+R+ DAS+M
Sbjct: 491 GSHVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIM 550

Query: 87  PYTVNANIHATCVMIGEKCADLIK 110
           P  V+ N++A  VMI EK AD+IK
Sbjct: 551 PSVVSGNLNAPTVMIAEKAADIIK 574

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 1/84 (1%)

Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVRIADASVM 86
           G H  SD      ++ ++ S YH S T +MG  +  T+VV+ + +V G+EN+R+ DAS+M
Sbjct: 494 GSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIM 553

Query: 87  PYTVNANIHATCVMIGEKCADLIK 110
           P  V+ N++A  +MI EK AD+IK
Sbjct: 554 PSVVSGNLNAPTIMIAEKAADVIK 577

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=betA PE=3 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 25  VCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADAS 84
           +  G +  SDD     I+  + + YH S + +MGD+ + +VV+ + +VHG++ +R+ DAS
Sbjct: 448 ISPGANVQSDDELDAFIREHAETAYHPSCSCKMGDDKM-AVVDGQGRVHGVQGLRVVDAS 506

Query: 85  VMPYTVNANIHATCVMIGEKCADLIK 110
           +MP  +  N++AT +MI EK AD I+
Sbjct: 507 IMPQIITGNLNATTIMIAEKIADRIR 532

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Yersinia pseudotuberculosis (taxid: 633)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=betA PE=3 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 25  VCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADAS 84
           +  G +  SDD     I+  + + YH S + +MGD+ + +VV+ + +VHG++ +R+ DAS
Sbjct: 448 ISPGANVQSDDELDAFIREHAETAYHPSCSCKMGDDKM-AVVDGQGRVHGVQGLRVVDAS 506

Query: 85  VMPYTVNANIHATCVMIGEKCADLIK 110
           +MP  +  N++AT +MI EK AD I+
Sbjct: 507 IMPQIITGNLNATTIMIAEKIADRIR 532

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Yersinia pseudotuberculosis serotype IB (strain PB1/+) (taxid: 502801)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 45  SSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEK 104
           S + YH   T RMG +   SVV+ +L+V G++ +R+ADASVMP TV  + HA  V+IGEK
Sbjct: 463 SHTLYHPMGTCRMGSD-EASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEK 521

Query: 105 CADLIK 110
            ADLI+
Sbjct: 522 AADLIR 527

Mycobacterium bovis (taxid: 1765)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316 OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%)

Query: 45  SSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEK 104
           S + YH   T RMG +   SVV+ +L+V G++ +R+ADASVMP TV  + HA  V+IGEK
Sbjct: 463 SHTLYHPMGTCRMGSD-EASVVDPQLRVRGVDGLRVADASVMPSTVRGHTHAPSVLIGEK 521

Query: 105 CADLIK 110
            ADLI+
Sbjct: 522 AADLIR 527

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=betA PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 55/86 (63%), Gaps = 1/86 (1%)

Query: 25  VCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADAS 84
           +  G +  +DD     I+  + + YH S + +MGD+ + +VV+ + +VHG++ +R+ DAS
Sbjct: 448 ISPGANVQNDDELDAFIREHAETAYHPSCSCKMGDDKM-AVVDGQGRVHGVQGLRVVDAS 506

Query: 85  VMPYTVNANIHATCVMIGEKCADLIK 110
           +MP  +  N++AT +MI EK AD I+
Sbjct: 507 IMPQIITGNLNATTIMIAEKIADRIR 532

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Yersinia pseudotuberculosis serotype O:3 (strain YPIII) (taxid: 502800)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
194767924	623	GF19427 [Drosophila ananassae] gi|190622	0.931	0.174	0.434	2e-20
195043477	624	GH11956 [Drosophila grimshawi] gi|193901	0.777	0.145	0.5	3e-20
195432701	625	GK19741 [Drosophila willistoni] gi|19416	0.931	0.174	0.426	2e-19
195478674	623	GE16087 [Drosophila yakuba] gi|194188131	0.948	0.178	0.411	6e-19
194894921	623	GG19435 [Drosophila erecta] gi|190649794	0.794	0.149	0.468	6e-19
195566780	623	GD15829 [Drosophila simulans] gi|1942043	0.794	0.149	0.468	6e-19
195354605	623	GM12021 [Drosophila sechellia] gi|194129	0.794	0.149	0.468	8e-19
328717265	581	PREDICTED: glucose dehydrogenase [accept	0.726	0.146	0.455	8e-19
195130090	625	GI15377 [Drosophila mojavensis] gi|19390	0.777	0.145	0.478	1e-18
195396649	625	GJ16800 [Drosophila virilis] gi|19414671	0.777	0.145	0.489	2e-18

>gi|194767924|ref|XP_001966064.1| GF19427 [Drosophila ananassae] gi|190622949|gb|EDV38473.1| GF19427 [Drosophila ananassae]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 13/122 (10%)

Query: 3   DLNTMEMTLN-FLNWPKTM-----------VDAIVCDGFHYDSDDYWKCTIKRRSSSYYH 50
           D++T    LN + N PKT            VD   C+G  Y SDDYW+C I+  +++ YH
Sbjct: 492 DVDTYIRALNIYKNLPKTKAFSEREAALHKVDLEACNGLEYQSDDYWRCYIRHMTTTVYH 551

Query: 51  LSSTARMG-DNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLI 109
              T +MG  N  T+VV+ +L+VHG + +R+ DAS+MP  V AN +A C+MIGEK AD+I
Sbjct: 552 PVGTTKMGPKNDPTAVVDARLRVHGAKGLRVIDASIMPDIVGANTNAACIMIGEKGADMI 611

Query: 110 KQ 111
           K+
Sbjct: 612 KE 613

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195043477|ref|XP_001991626.1| GH11956 [Drosophila grimshawi] gi|193901384|gb|EDW00251.1| GH11956 [Drosophila grimshawi]

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 1/92 (1%)

Query: 21  VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVR 79
           VD   C+GF Y +DDYW+C I+  +++ YH   TARMG     T+VV+ +L+VHG   +R
Sbjct: 522 VDLEACNGFAYQTDDYWRCYIRHMTTTVYHPVGTARMGPVTDPTAVVDARLRVHGASGLR 581

Query: 80  IADASVMPYTVNANIHATCVMIGEKCADLIKQ 111
           + DAS+MP  V AN +A C+MIGEK AD+IK+
Sbjct: 582 VMDASIMPDIVGANTNAACIMIGEKGADMIKE 613

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432701|ref|XP_002064355.1| GK19741 [Drosophila willistoni] gi|194160440|gb|EDW75341.1| GK19741 [Drosophila willistoni]

 Score =  100 bits (248), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/122 (42%), Positives = 76/122 (62%), Gaps = 13/122 (10%)

Query: 3   DLNTMEMTLN-FLNWPKTM-----------VDAIVCDGFHYDSDDYWKCTIKRRSSSYYH 50
           D++T    LN + N P+T            +D   C+   Y SD+YW+C I+  +++ YH
Sbjct: 494 DVDTYIRALNIYKNLPETRAFAEREAKLHKIDLKDCNSLEYQSDEYWRCYIRHMTTTVYH 553

Query: 51  LSSTARMGD-NILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLI 109
              TARMG  N  TSVV+ +L+VHG++ +R+ DAS+MP  V AN +A C+MIGEK AD+I
Sbjct: 554 PVGTARMGPANDPTSVVDARLRVHGVKGLRVMDASIMPDIVGANTNAACIMIGEKGADMI 613

Query: 110 KQ 111
           K+
Sbjct: 614 KE 615

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478674|ref|XP_002100607.1| GE16087 [Drosophila yakuba] gi|194188131|gb|EDX01715.1| GE16087 [Drosophila yakuba]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/124 (41%), Positives = 75/124 (60%), Gaps = 13/124 (10%)

Query: 3   DLNTMEMTLN-FLNWPKTM-----------VDAIVCDGFHYDSDDYWKCTIKRRSSSYYH 50
           D++T    LN + N P T            +D   C+G  Y SDDYW+C I+  +++ YH
Sbjct: 492 DVDTYVRALNIYKNLPNTKAFSEREAALHKLDLEACNGLTYQSDDYWRCYIRHMTTTVYH 551

Query: 51  LSSTARMGDNI-LTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLI 109
              T RMG +   T+VV+ +L+VHG + +R+ DAS+MP  V AN +A C+MIGEK AD+I
Sbjct: 552 PVGTTRMGPSTDPTAVVDPQLRVHGAKGLRVIDASIMPDIVGANTNAACIMIGEKGADII 611

Query: 110 KQYW 113
           K+ +
Sbjct: 612 KEEY 615

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894921|ref|XP_001978145.1| GG19435 [Drosophila erecta] gi|190649794|gb|EDV47072.1| GG19435 [Drosophila erecta]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 21  VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYKLQVHGLENVR 79
           +D   C+G  Y SDDYW+C I+  +++ YH   T RMG +   T+VV+ +L+VHG + +R
Sbjct: 522 LDLEACNGLTYQSDDYWRCYIRHMTTTVYHPVGTTRMGPSTDPTAVVDPQLRVHGAKGLR 581

Query: 80  IADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113
           + DAS+MP  V AN +A C+MIGEK AD+IK+ +
Sbjct: 582 VIDASIMPDIVGANTNAACIMIGEKGADMIKEEY 615

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195566780|ref|XP_002106954.1| GD15829 [Drosophila simulans] gi|194204350|gb|EDX17926.1| GD15829 [Drosophila simulans]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 21  VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYKLQVHGLENVR 79
           +D   C+G  Y SDDYW+C I+  +++ YH   T RMG +   T+VV+ +L+VHG + +R
Sbjct: 522 LDLEACNGLTYQSDDYWRCYIRHMTTTVYHPVGTTRMGPSTDPTAVVDPQLRVHGAKGLR 581

Query: 80  IADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113
           + DAS+MP  V AN +A C+MIGEK AD+IK+ +
Sbjct: 582 VIDASIMPDIVGANTNAACIMIGEKGADMIKEEY 615

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354605|ref|XP_002043787.1| GM12021 [Drosophila sechellia] gi|194129013|gb|EDW51056.1| GM12021 [Drosophila sechellia]

 Score = 97.8 bits (242), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 21  VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYKLQVHGLENVR 79
           +D   C+G  Y SDDYW+C I+  +++ YH   T RMG +   T+VV+ +L+VHG + +R
Sbjct: 522 LDLEACNGLTYQSDDYWRCYIRHMTTTVYHPVGTTRMGPSTDPTAVVDPQLRVHGAKGLR 581

Query: 80  IADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113
           + DAS+MP  V AN +A C+MIGEK AD+IK+ +
Sbjct: 582 VIDASIMPDIVGANTNAACIMIGEKGADMIKEEY 615

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717265|ref|XP_001944179.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 62/90 (68%), Gaps = 5/90 (5%)

Query: 26  CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASV 85
           C  F + SDDYW C  K ++++Y+H  ST RMGD     VVN KLQV G++ +R+ D+S+
Sbjct: 497 CKHFEFKSDDYWACVSKHQTNTYHHQCSTCRMGD-----VVNNKLQVIGIQGLRVVDSSI 551

Query: 86  MPYTVNANIHATCVMIGEKCADLIKQYWEK 115
            P+  +A+++A  +M+GEK AD+I+ YW K
Sbjct: 552 FPHIPHAHLYAPTLMVGEKGADMIRSYWSK 581

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|195130090|ref|XP_002009487.1| GI15377 [Drosophila mojavensis] gi|193907937|gb|EDW06804.1| GI15377 [Drosophila mojavensis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 21  VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVR 79
           VD   C+   Y SD+YW+C I+  +++ YH   TARMG  +  T+VV+ +L+VHG   +R
Sbjct: 522 VDLEACNALEYQSDEYWRCYIRHMTTTVYHPVGTARMGPASDPTAVVDPRLRVHGARGLR 581

Query: 80  IADASVMPYTVNANIHATCVMIGEKCADLIKQ 111
           + DAS+MP  V AN +A C+MIGEK AD+IK+
Sbjct: 582 VIDASIMPDIVGANTNAACIMIGEKGADMIKE 613

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396649|ref|XP_002056943.1| GJ16800 [Drosophila virilis] gi|194146710|gb|EDW62429.1| GJ16800 [Drosophila virilis]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 1/92 (1%)

Query: 21  VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYKLQVHGLENVR 79
           VD   C+G  Y SDDYW+C I+  +++ YH   TARMG     TSVV+ +L+VHG   +R
Sbjct: 522 VDLEACNGLTYQSDDYWRCYIRHMTTTVYHPVGTARMGPATDPTSVVDARLRVHGASGLR 581

Query: 80  IADASVMPYTVNANIHATCVMIGEKCADLIKQ 111
           + D S+MP  V AN +A  +MIGEK AD+IK+
Sbjct: 582 VIDGSIMPDIVGANTNAAIIMIGEKGADMIKE 613

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
FB|FBgn0030593	623	CG9512 [Drosophila melanogaste	0.777	0.146	0.467	2.9e-18
FB|FBgn0030586	626	CG12539 [Drosophila melanogast	0.760	0.142	0.433	1.3e-17
FB|FBgn0030587	616	CG9522 [Drosophila melanogaste	0.752	0.142	0.415	4.4e-17
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.692	0.111	0.5	1.2e-16
FB|FBgn0030594	646	CG9509 [Drosophila melanogaste	0.760	0.137	0.450	2e-15
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.752	0.101	0.438	3.1e-15
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.769	0.146	0.389	1e-14
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.837	0.157	0.382	1.1e-14
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.777	0.145	0.391	3.6e-14
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.837	0.156	0.366	7.6e-14

FB|FBgn0030593 CG9512 [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 2.9e-18, P = 2.9e-18
 Identities = 43/92 (46%), Positives = 63/92 (68%)

Query:    21 VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYKLQVHGLENVR 79
             +D   C+G  Y SDDYW+C I+  +++ YH   T RMG +   T+VV+ +L+VHG + +R
Sbjct:   522 LDLEACNGLTYQSDDYWRCYIRHMTTTVYHPVGTTRMGPSTDPTAVVDPQLRVHGAKGLR 581

Query:    80 IADASVMPYTVNANIHATCVMIGEKCADLIKQ 111
             + DAS+MP  V AN +A C+MI EK AD+IK+
Sbjct:   582 VIDASIMPDIVGANTNAACIMIAEKGADMIKE 613

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030586 CG12539 [Drosophila melanogaster (taxid:7227)]

 Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 39/90 (43%), Positives = 63/90 (70%)

Query:    26 CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLENVRIADAS 84
             C+G  + SDDYW+C+I+  S + +H  +T RMG ++  T+VVN++L+VHG+  +R+ D S
Sbjct:   535 CEGHQFASDDYWRCSIRTLSYTLHHQVATCRMGAESDPTTVVNHQLKVHGVRKLRVVDTS 594

Query:    85 VMPYTVNANIHATCVMIGEKCADLIKQYWE 114
             ++P+   A+ +A   MIGEK AD+I+  WE
Sbjct:   595 IIPFPPTAHTNAAAFMIGEKAADMIRTDWE 624

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 4.4e-17, P = 4.4e-17
 Identities = 37/89 (41%), Positives = 62/89 (69%)

Query:    26 CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLENVRIADAS 84
             C+ + + SDDYW+C+I+  S + +H  +T RMG ++  T+VVN++L+VHG+  +R+ D S
Sbjct:   527 CENYEFASDDYWRCSIRTLSYTLHHQVATCRMGAESDPTTVVNHQLKVHGVRKLRVVDTS 586

Query:    85 VMPYTVNANIHATCVMIGEKCADLIKQYW 113
             ++P+   A+ +A   MIGEK AD+I+  W
Sbjct:   587 IIPFPPTAHTNAAAFMIGEKAADMIRSEW 615

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 41/82 (50%), Positives = 58/82 (70%)

Query:    33 SDDYWKCTIKRRSSSYYHLSSTARMGDNILT-SVVNYKLQVHGLENVRIADASVMPYTVN 91
             +DDYW C I++ + + YH+S TA+MG      +VV+ +L+V+G+  +R+ DAS+MP   N
Sbjct:   576 TDDYWNCFIRQYTMTIYHMSGTAKMGPPTDPWAVVDPQLRVYGIPGLRVIDASIMPAITN 635

Query:    92 ANIHATCVMIGEKCADLIKQYW 113
              NIHA  VMIGEK AD+IKQ W
Sbjct:   636 GNIHAPVVMIGEKGADMIKQLW 657

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030594 CG9509 [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/91 (45%), Positives = 62/91 (68%)

Query:    26 CDGF-HYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLENVRIADA 83
             CD   +Y S++YW+C  K  + + YH S T +MG D    + V+ +L+VHGLEN+R+ADA
Sbjct:   536 CDQIENYRSEEYWRCYAKYFTVTCYHQSGTVKMGPDYDNEACVSQRLKVHGLENLRVADA 595

Query:    84 SVMPYTVNANIHATCVMIGEKCADLIKQYWE 114
             S+MP  V+AN +A  VMIGE+ A  I++ ++
Sbjct:   596 SIMPAVVSANTNAATVMIGERAAHFIQEDYQ 626

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0007498 "mesoderm development" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 204 (76.9 bits), Expect = 3.1e-15, P = 3.1e-15
 Identities = 39/89 (43%), Positives = 59/89 (66%)

Query:    26 CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYKLQVHGLENVRIADAS 84
             C    + S++YW C IK  + + YH + T RMG +  +T+VV+ +L+V+G+  VR+ DAS
Sbjct:   768 CRHLPFQSNEYWACCIKEFTFTIYHPAGTCRMGPSWDVTAVVDPRLRVYGVSGVRVVDAS 827

Query:    85 VMPYTVNANIHATCVMIGEKCADLIKQYW 113
             +MP  VN N +A  + IGEK +DLIK+ W
Sbjct:   828 IMPTIVNGNPNAPVIAIGEKASDLIKEDW 856

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 37/95 (38%), Positives = 57/95 (60%)

Query:    26 CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIAD 82
             C+   + S+ YWKC ++R  SS  H S T +MG   DN  TSVV+ +L++HG+  +R+ D
Sbjct:   519 CENLKFASEAYWKCCLRRYGSSLQHQSGTCKMGPATDN--TSVVDAQLRIHGIRGLRVVD 576

Query:    83 ASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV 117
             ASV+P     + +A  +M+ EK  D+IK  W   +
Sbjct:   577 ASVLPNVPAGHTNAIVIMVAEKAGDMIKDAWRMPI 611

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 39/102 (38%), Positives = 61/102 (59%)

Query:    11 LNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYK 69
             +N   W K +     C    Y S  YW C ++  + + YH S TA+MG      +VV+++
Sbjct:   517 INARLWEKKIP---TCKQHPYKSWAYWACYVRHFTFTIYHYSGTAKMGPKSDRAAVVDHR 573

Query:    70 LQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQ 111
             L+VHG++N+R+ADAS+MP  ++ + +    MI EK AD+IKQ
Sbjct:   574 LRVHGIKNLRVADASIMPEIMSGHPNGPVFMIAEKAADMIKQ 615

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 36/92 (39%), Positives = 61/92 (66%)

Query:    26 CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNI-LTSVVNYKLQVHGLENVRIADAS 84
             C+     +D +W+C ++R +S+ YH   T +MG      +VV+ KL+V+G+  +R+ DAS
Sbjct:   532 CEQVPLFTDAFWECMVRRYTSTIYHPVGTCKMGPYWDKDAVVDAKLRVYGIRGLRVIDAS 591

Query:    85 VMPYTVNANIHATCVMIGEKCADLIKQYWEKS 116
             +MP  V+AN +A  +MI EK +D+IK++W K+
Sbjct:   592 IMPKLVSANTNAPVIMIAEKGSDMIKEFWIKN 623

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 189 (71.6 bits), Expect = 7.6e-14, P = 7.6e-14
 Identities = 37/101 (36%), Positives = 60/101 (59%)

Query:    18 KTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLE 76
             KT+V    C+   + SD YW+C +++ +    H + + +MG  +   +VVN++L+VHG+ 
Sbjct:   514 KTVVKG--CEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGIR 571

Query:    77 NVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKSV 117
              +R+ D S+MP   + N HA  VMI EK A L+K+ W   V
Sbjct:   572 GLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAWGAKV 612

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P64264	Y1310_MYCBO	1, ., 1, ., -, ., -	0.5151	0.5555	0.1231	yes	N/A
P64263	Y1279_MYCTU	1, ., 1, ., -, ., -	0.5151	0.5555	0.1231	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	117
pfam05199	139	pfam05199, GMC_oxred_C, GMC oxidoreductase	5e-27
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	8e-23
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-22
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	7e-18
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	4e-11
TIGR02462	544	TIGR02462, pyranose_ox, pyranose oxidase	0.002

>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase

 Score = 96.7 bits (241), Expect = 5e-27
 Identities = 27/85 (31%), Positives = 42/85 (49%)

Query: 21  VDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRI 80
               V  G    SDD     I+  + + +H   T RMG +    VV+  L+VHG++N+R+
Sbjct: 55  GPVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDDGVVDPDLRVHGVDNLRV 114

Query: 81  ADASVMPYTVNANIHATCVMIGEKC 105
            DASV P + + N   T   + E+ 
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139

This domain found associated with pfam00732. Length = 139

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score = 91.4 bits (227), Expect = 8e-23
 Identities = 31/88 (35%), Positives = 47/88 (53%)

Query: 23  AIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIAD 82
           A +  G    +D+     I+  + + YH   T RMG +    V +  L+VHGLEN+R+ D
Sbjct: 447 AELAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVD 506

Query: 83  ASVMPYTVNANIHATCVMIGEKCADLIK 110
           ASVMP +   N + T + + E+ AD I 
Sbjct: 507 ASVMPTSTGVNPNLTIIALAERAADHIL 534

Length = 542

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 91.0 bits (227), Expect = 1e-22
 Identities = 29/70 (41%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 41  IKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVM 100
           ++  + + YH S T +MG + + +VV+ + +VHG+E +R+ DAS+MP   N N++A  +M
Sbjct: 464 VREHAETAYHPSCTCKMGTDPM-AVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIM 522

Query: 101 IGEKCADLIK 110
           I EK ADLI+
Sbjct: 523 IAEKAADLIR 532

Length = 560

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score = 77.2 bits (190), Expect = 7e-18
 Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 5/73 (6%)

Query: 41  IKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHAT 97
           ++R   +  H   T +MG   D +  SVV+ + +VHG+E +R+ DAS+MP   N N++A 
Sbjct: 457 VRRHGETALHPCGTCKMGPASDEM--SVVDPETRVHGMEGLRVVDASIMPRITNGNLNAP 514

Query: 98  CVMIGEKCADLIK 110
            +M+GEK AD+I+
Sbjct: 515 VIMMGEKAADIIR 527

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 44  RSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIG 102
           R ++  HL  + RMG  +   +VV+ + +V G+E + + D S++P   +   HAT VM+ 
Sbjct: 420 RLATSQHLCGSCRMGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVA 479

Query: 103 EKCADLI 109
           E+ A+ +
Sbjct: 480 ERAAEFL 486

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 50  HLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLI 109
           HL+ T R+G +  T+V N   +VH  +N+ +     +P    AN   T +    K A+ I
Sbjct: 480 HLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYI 539

Query: 110 KQY 112
              
Sbjct: 540 INN 542

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. Length = 544

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG1238|consensus	623		99.97
PF05199	144	GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078	99.97
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.97
PRK02106	560	choline dehydrogenase; Validated	99.96
PLN02785	587	Protein HOTHEAD	99.95
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.93
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.81
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	89.97
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	86.37
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	86.13
KOG2495|consensus	491		80.15

>KOG1238|consensus

Probab=99.97  E-value=5.6e-32  Score=230.54  Aligned_cols=113  Identities=35%  Similarity=0.609  Sum_probs=104.7

Q ss_pred             hHHHHHHcCcccccCcccccccc--cCCCCCCCCHHHHHHHHhcccCccccccCCccccC-CCCCccccCCCeEeccCCe
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVDAI--VCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENV   78 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL   78 (117)
                      |.+.+++++++|+++.......+  .|......+|++|+||+|..+.|.||++|||+||+ .|+++|||+++||||++||
T Consensus       502 ~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~L  581 (623)
T KOG1238|consen  502 RTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRGL  581 (623)
T ss_pred             HHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccCc
Confidence            66889999999999998765433  27666789999999999999999999999999999 8999999999999999999


Q ss_pred             EEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537          79 RIADASVMPYTVNANIHATCVMIGEKCADLIKQYWE  114 (117)
Q Consensus        79 ~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~  114 (117)
                      ||+|+||||.+|++||++|+||||||+|++|+++|.
T Consensus       582 RVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~  617 (623)
T KOG1238|consen  582 RVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWL  617 (623)
T ss_pred             eEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999984

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.97  E-value=1.2e-31  Score=188.24  Aligned_cols=104  Identities=32%  Similarity=0.449  Sum_probs=84.9

Q ss_pred             ChHHHHHHcCcccccCccccccc-c--cCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCC
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVDA-I--VCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLEN   77 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~~-~--~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~n   77 (117)
                      +|.+++++.++ |+++...+... .  .++.....++++|++|+++...+++|++|||+||+++..+|||++|||||++|
T Consensus        38 ~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~n  116 (144)
T PF05199_consen   38 IKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRN  116 (144)
T ss_dssp             HHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBS
T ss_pred             HHHHHHHHhhh-hcccccccccccccccccccccccchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeee
Confidence            36788999888 87775543221 1  13444668899999999999999999999999999888899999999999999


Q ss_pred             eEEecCCCCCCCCCCChHHHHHHHHHHH
Q psy3537          78 VRIADASVMPYTVNANIHATCVMIGEKC  105 (117)
Q Consensus        78 L~V~DaSv~P~~~~~np~~t~~~~a~r~  105 (117)
                      |||+|+|+||+.+++||++|+||+|+|+
T Consensus       117 L~V~DaSv~P~~~~~np~~t~~ala~ra  144 (144)
T PF05199_consen  117 LRVADASVFPTSPGANPTLTIMALAERA  144 (144)
T ss_dssp             EEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred             EEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence            9999999999999999999999999996

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....

>TIGR01810 betA choline dehydrogenase

Probab=99.97  E-value=1.8e-30  Score=217.08  Aligned_cols=108  Identities=28%  Similarity=0.404  Sum_probs=98.9

Q ss_pred             hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccC-CCCCccccCCCeEeccCCeEE
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVRI   80 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL~V   80 (117)
                      |.+++++++++|+.+...+.    .|+....+|++|++|+|+...+.+|++|||+||+ ++.+||||+++||||++||||
T Consensus       422 ~~~~~i~~~~~~~~~~~~~~----~p~~~~~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrV  497 (532)
T TIGR01810       422 RVTREILKQKALDPYRGGEI----SPGPEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRV  497 (532)
T ss_pred             HHHHHHHcCcchhhcccccc----CCCCCCCCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEE
Confidence            67899999999988765443    3777778999999999999999999999999998 788999999999999999999


Q ss_pred             ecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          81 ADASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        81 ~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      +|+||||.+|++||++|+||+|||+||+|+++.
T Consensus       498 vDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~  530 (532)
T TIGR01810       498 VDASIMPRITNGNLNAPVIMMGEKAADIIRGKK  530 (532)
T ss_pred             eeeccCCCCCCCccHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999998753

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK02106 choline dehydrogenase; Validated

Probab=99.96  E-value=7.2e-30  Score=214.82  Aligned_cols=107  Identities=29%  Similarity=0.437  Sum_probs=97.4

Q ss_pred             hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEe
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIA   81 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~   81 (117)
                      |.+++|+++++++++...+.    .|+....++++|++|+++...+++|++|||+||+++ +||||+++||||++||||+
T Consensus       429 ~~~~~i~~~~~~~~~~~~~~----~p~~~~~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~-~sVVD~~~rV~Gv~nLrVv  503 (560)
T PRK02106        429 RLTREIMAQPALDPYRGREI----SPGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDP-MAVVDPEGRVHGVEGLRVV  503 (560)
T ss_pred             HHHHHHHcChhhhhcccccc----CCCcccCCHHHHHHHHHhccCcCcccCCCeecCCCC-CeeECCCCEEeccCCeEEe
Confidence            67889999999988765443    376667889999999999999999999999999855 8999999999999999999


Q ss_pred             cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          82 DASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        82 DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      |+||||+.+++||++|+||+|||+|+.|++++
T Consensus       504 DaSv~P~~~~~np~~ti~aiaeraAd~I~~~~  535 (560)
T PRK02106        504 DASIMPTITNGNLNAPTIMIAEKAADLIRGRT  535 (560)
T ss_pred             eccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999876

>PLN02785 Protein HOTHEAD

Probab=99.95  E-value=1.3e-27  Score=203.64  Aligned_cols=107  Identities=19%  Similarity=0.254  Sum_probs=91.6

Q ss_pred             ChHHHHHHcCcccccCcccccc-------------cccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCcccc
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVD-------------AIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVN   67 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~-------------~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD   67 (117)
                      +|.+++|+++++|+++...+..             .+..|. ...++++|++|+|++..+.||++|||+||     +|||
T Consensus       461 ~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~d~~l~~~ir~~~~t~~H~~GTc~MG-----~VVD  534 (587)
T PLN02785        461 IRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIPK-HTNDTKSLEQFCKDTVITIWHYHGGCHVG-----KVVD  534 (587)
T ss_pred             HHHHHHHHcChhhhhhccccccccccccccccccccccCCC-CCCCHHHHHHHHHHhcccccCCcccccCC-----CeEC
Confidence            3678999999999887633210             000132 24678999999999999999999999998     6999


Q ss_pred             CCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          68 YKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        68 ~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      +++||||++||||+|+||||.+|++||++|+||+|||+|++|+++.
T Consensus       535 ~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~  580 (587)
T PLN02785        535 QNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER  580 (587)
T ss_pred             CCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999998875

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.93  E-value=4.9e-26  Score=192.35  Aligned_cols=107  Identities=29%  Similarity=0.337  Sum_probs=97.5

Q ss_pred             hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEe
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIA   81 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~   81 (117)
                      +..++++.++++..+...+.    .|+....+++++.+|++....+.+|++|||+||.++..+|+|+++||||++||||+
T Consensus       430 ~~~r~i~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~Vv  505 (542)
T COG2303         430 RLTREIIGQPALDARRKAEL----APGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVV  505 (542)
T ss_pred             HHHHHHhcCccchhhHHHhh----cCCCccccHHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEe
Confidence            56788888888888877665    38888999999999999999999999999999987777777799999999999999


Q ss_pred             cCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537          82 DASVMPYTVNANIHATCVMIGEKCADLIKQY  112 (117)
Q Consensus        82 DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~  112 (117)
                      |+|+||+++++||++|++|+|+|+|++|+++
T Consensus       506 DaSvmPt~~~~Np~~ti~ala~raA~~I~~~  536 (542)
T COG2303         506 DASVMPTSTGVNPNLTIIALAERAADHILGD  536 (542)
T ss_pred             CcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999873

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.81  E-value=3.4e-20  Score=157.43  Aligned_cols=68  Identities=26%  Similarity=0.342  Sum_probs=65.2

Q ss_pred             ccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537          47 SYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWE  114 (117)
Q Consensus        47 ~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~  114 (117)
                      .++|++|||+||.++.++|||+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|+++++
T Consensus       477 ~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~~  544 (544)
T TIGR02462       477 LALHLAGTTRIGFDEQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNFG  544 (544)
T ss_pred             ccccCCCCeecCCCCCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999999999999999999999999999999999999998763

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=89.97  E-value=0.74  Score=38.61  Aligned_cols=51  Identities=29%  Similarity=0.197  Sum_probs=36.4

Q ss_pred             CccccCCCeEeccCCeEEe-cCCCCCCCCCCChHH-HHHHHHHHHHHHHHHHh
Q psy3537          63 TSVVNYKLQVHGLENVRIA-DASVMPYTVNANIHA-TCVMIGEKCADLIKQYW  113 (117)
Q Consensus        63 ~~VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~-t~~~~a~r~a~~i~~~~  113 (117)
                      .=+||+++++.|.+++|++ |++.++..-...|++ -.+.-|+.+|..|++++
T Consensus       279 rl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l  331 (405)
T COG1252         279 RLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARL  331 (405)
T ss_pred             CEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence            3589999999999999999 999998750011222 23456677777777765

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=86.37  E-value=1.8  Score=35.54  Aligned_cols=49  Identities=16%  Similarity=0.071  Sum_probs=35.5

Q ss_pred             cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      .||+.+|+.+.+|+|++ |++-++..+........+.-|..+|+.|.+.+
T Consensus       298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l  347 (424)
T PTZ00318        298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL  347 (424)
T ss_pred             EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence            57888999999999999 88887654322233345667788888887765

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=86.13  E-value=1.7  Score=34.43  Aligned_cols=49  Identities=18%  Similarity=0.068  Sum_probs=34.8

Q ss_pred             cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      .||+.+|..+.+|+|++ |++.++..+........+.-|..+|..|.+.+
T Consensus       261 ~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l  310 (364)
T TIGR03169       261 RVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL  310 (364)
T ss_pred             EECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence            57778888889999999 88877655443333445666777777776654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG2495|consensus

Probab=80.15  E-value=3  Score=35.79  Aligned_cols=55  Identities=16%  Similarity=0.060  Sum_probs=36.0

Q ss_pred             ccCCccccCCCCCc----cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy3537          51 LSSTARMGDNILTS----VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQ  111 (117)
Q Consensus        51 ~~GT~~Mg~~~~~~----VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~  111 (117)
                      +.++--|-.-++++    .||+++||.|++|+|-+ |++.+|..+   |   ..-+|++=+..+.+
T Consensus       331 p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~---~---tAQVA~QqG~yLAk  390 (491)
T KOG2495|consen  331 PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLK---P---TAQVAEQQGAYLAK  390 (491)
T ss_pred             hhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCc---c---HHHHHHHHHHHHHH
Confidence            33444555544444    89999999999999988 888555544   3   33456655555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		3e-13
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		8e-11
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		8e-11
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		9e-11
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		5e-06
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		4e-05

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 32  DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
           DSD      +  R  + +H + TAR+  NI   VV+ KL+VHG++ +R+ADASV+P   +
Sbjct: 492 DSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPD 551
Query: 92  ANIHATCVMIGEKCADLIK 110
             I  +   +GEKCAD+IK
Sbjct: 552 CRIQNSVYAVGEKCADMIK 570

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIADAS 84
           G    +D+  +  I++  ++ YH   T RMG   D +  S ++ +L+V G+  +R+ADAS
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEM--SPLDPELRVKGVTGLRVADAS 501
Query: 85  VMPYTVNANIHATCVMIGEKCADLIK 110
           VMP  V  N + T +MIGE+CADLI+
Sbjct: 502 VMPEHVTVNPNITVMMIGERCADLIR 527

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIADAS 84
           G    +D+  +  I++  ++ YH   T RMG   D +  S ++ +L+V G+  +R+ADAS
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEM--SPLDPELRVKGVTGLRVADAS 501
Query: 85  VMPYTVNANIHATCVMIGEKCADLIK 110
           VMP  V  N + T +MIGE+CADLI+
Sbjct: 502 VMPEHVTVNPNITVMMIGERCADLIR 527

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG---DNILTSVVNYKLQVHGLENVRIADAS 84
           G    +D+  +  I++  ++ YH   T RMG   D +  S ++ +L+V G+  +R+ADAS
Sbjct: 444 GVEAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEM--SPLDPELRVKGVTGLRVADAS 501
Query: 85  VMPYTVNANIHATCVMIGEKCADLIK 110
           VMP  V  N + T +MIGE+CADLI+
Sbjct: 502 VMPEHVTVNPNITVMMIGERCADLIR 527

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 41  IKRRSSSYYHLSSTARMGDNILT-SVVNYKLQVHGLENVRIADASVMPYTVNANIHATCV 99
           I+  +++ +H   TA M     +  VV+  L+V G++ +RI D S++P+  NA+      
Sbjct: 493 IRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIY 552
Query: 100 MIGEKCADLIK 110
           ++G++ ADLIK
Sbjct: 553 LVGKQGADLIK 563

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 32  DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
           + DD+    I R   +++H   T RMG +   +VV+  L++  L+N+ + DAS+MP    
Sbjct: 448 EMDDF----IARSVITHHHPCGTCRMGKDP-DAVVDANLRLKALDNLFVVDASIMPNLTA 502
Query: 92  ANIHATCVMIGEKCADLIKQY 112
             IHA  + I E  A   +QY
Sbjct: 503 GPIHAAVLAIAETFA---RQY 520

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-35
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	1e-34
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	4e-33
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	2e-31
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	2e-30
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	8e-30
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	9e-29
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	4e-28
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	3e-15
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	7e-15
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	4e-12

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  126 bits (318), Expect = 2e-35
 Identities = 20/91 (21%), Positives = 39/91 (42%)

Query: 26  CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASV 85
            +     +   W   + +     +H  S+  M    L  VV+   +V+G + +R+ D S+
Sbjct: 496 YNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI 555

Query: 86  MPYTVNANIHATCVMIGEKCADLIKQYWEKS 116
            P  V++++      +  K AD I   + KS
Sbjct: 556 PPTQVSSHVMTIFYGMALKVADAILDDYAKS 586

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  124 bits (313), Expect = 1e-34
 Identities = 33/86 (38%), Positives = 49/86 (56%)

Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMP 87
               DSD      +  R  + +H + TAR+  NI   VV+ KL+VHG++ +R+ADASV+P
Sbjct: 488 EMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIP 547

Query: 88  YTVNANIHATCVMIGEKCADLIKQYW 113
              +  I  +   +GEKCAD+IK   
Sbjct: 548 IIPDCRIQNSVYAVGEKCADMIKAEH 573

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  120 bits (302), Expect = 4e-33
 Identities = 17/82 (20%), Positives = 35/82 (42%)

Query: 32  DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
                W   I       YH   T  M    +  VV+   +V+G++ +R+ D S+ P  ++
Sbjct: 498 ADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMS 557

Query: 92  ANIHATCVMIGEKCADLIKQYW 113
           +++      +  K +D I + +
Sbjct: 558 SHVMTVFYAMALKISDAILEDY 579

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  114 bits (289), Expect = 2e-31
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 32  DSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLENVRIADASVMPYTV 90
             D   +  I+  +++ +H   TA M        VV+  L+V G++ +RI D S++P+  
Sbjct: 484 TDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAP 543

Query: 91  NANIHATCVMIGEKCADLIKQ 111
           NA+      ++G++ ADLIK 
Sbjct: 544 NAHTQGPIYLVGKQGADLIKA 564

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  111 bits (281), Expect = 2e-30
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 30  HYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYT 89
               D  ++   +   +SY+H      +G      V++   +V G+  +R+ D S  PYT
Sbjct: 439 DQTDDAAFETFCRESVASYWHYHGGCLVG-----KVLDGDFRVTGINALRVVDGSTFPYT 493

Query: 90  VNANIHATCVMIGEKCADLIKQ 111
             ++     +M+G      I Q
Sbjct: 494 PASHPQGFYLMLGRYVGIKILQ 515

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  110 bits (277), Expect = 8e-30
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 28  GFHYDSDDYWKCTIKRRSSSYYHLSSTARMG-DNILTSVVNYKLQVHGLENVRIADASVM 86
           G    +D+  +  I++  ++ YH   T RMG      S ++ +L+V G+  +R+ADASVM
Sbjct: 444 GVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVM 503

Query: 87  PYTVNANIHATCVMIGEKCADLIKQ 111
           P  V  N + T +MIGE+CADLI+ 
Sbjct: 504 PEHVTVNPNITVMMIGERCADLIRS 528

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  107 bits (270), Expect = 9e-29
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 32  DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVN 91
           +S       I R   +++H   T RMG +   +VV+  L++  L+N+ + DAS+MP    
Sbjct: 444 NSAAEMDDFIARSVITHHHPCGTCRMGKDPD-AVVDANLRLKALDNLFVVDASIMPNLTA 502

Query: 92  ANIHATCVMIGEKCADLIKQ 111
             IHA  + I E  A     
Sbjct: 503 GPIHAAVLAIAETFARQYHH 522

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  105 bits (265), Expect = 4e-28
 Identities = 17/80 (21%), Positives = 36/80 (45%)

Query: 31  YDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTV 90
             + + +       + +  H  S+  +G +  ++VV+  ++V G  N+ I DA ++P+  
Sbjct: 461 TQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLP 520

Query: 91  NANIHATCVMIGEKCADLIK 110
             N   T +   E+ A  I 
Sbjct: 521 TGNPQGTLMSAAEQAAAKIL 540

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 69.3 bits (169), Expect = 3e-15
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 49  YHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADL 108
           YH      +G        +   +V G +N+ + D S++P +V  N   T   + E+  + 
Sbjct: 441 YHPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVER 495

Query: 109 I 109
           I
Sbjct: 496 I 496

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 68.3 bits (166), Expect = 7e-15
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 48  YYHLSSTARMGDN--ILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKC 105
             HL  T RMG +       VN   +V G +N+ +     +P    AN   T + +  K 
Sbjct: 546 VLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605

Query: 106 ADLIKQYWEKS 116
            + IKQ +  S
Sbjct: 606 CEYIKQNFTPS 616

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 60.6 bits (146), Expect = 4e-12
 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 48  YYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCAD 107
            YH      +         +   ++     + + D S++P  V  N   T   + E+  D
Sbjct: 445 TYHPLGGVLLN-----KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMD 499

Query: 108 LI 109
            I
Sbjct: 500 KI 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.98
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	99.97
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.97
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.97
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.97
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.97
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.96
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.95
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.89
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.87
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.85
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	83.59
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	81.2

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.98  E-value=6.5e-33  Score=233.78  Aligned_cols=111  Identities=31%  Similarity=0.433  Sum_probs=103.4

Q ss_pred             ChHHHHHH-cCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeE
Q psy3537           1 MNDLNTME-MTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVR   79 (117)
Q Consensus         1 ~~~~~~i~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~   79 (117)
                      +|.+++|+ ++++|+++...+.    .|+....+|++|++|+|+...+.+|++|||+||+++.+||||++|||||++|||
T Consensus       464 ~~~~~~i~~~~~~~~~~~~~e~----~p~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~Lr  539 (577)
T 3q9t_A          464 IRFSYDLLFKGEGFKDLVESEY----PWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLR  539 (577)
T ss_dssp             HHHHHHHHHHSTTGGGTEEEEE----SSCCCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTTTCSBCTTCBBTTCBSEE
T ss_pred             HHHHHHHHHhChhhhhcccccc----CCCCCcCCHHHHHHHHHhccccccccccceecCCCCCCceECCCCeEeCCCCcE
Confidence            36789999 9999999887665    377788999999999999999999999999999988899999999999999999


Q ss_pred             EecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537          80 IADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK  115 (117)
Q Consensus        80 V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~  115 (117)
                      |+|+||||.+|++||++|+||+|||+||.|++++++
T Consensus       540 VvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~~~~  575 (577)
T 3q9t_A          540 VADASVIPIIPDCRIQNSVYAVGEKCADMIKAEHKD  575 (577)
T ss_dssp             ECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EeecccccCCCCCccHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999998864

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=99.97  E-value=2e-32  Score=230.37  Aligned_cols=108  Identities=22%  Similarity=0.319  Sum_probs=100.1

Q ss_pred             ChHHHHHHcCcccccCcccccccccCCC-CCCCCHHHHHHHHhcccCccccccCCccccCCCCC-ccccCCCeEeccCCe
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVDAIVCDG-FHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILT-SVVNYKLQVHGLENV   78 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~-~VVD~~~~V~Gv~nL   78 (117)
                      +|.+++|+++++|+++...+.    .|+ ....+|++|++|+|+...+.+|++|||+||+++.+ +|||++|||||++||
T Consensus       456 ~~~~~~i~~~~~~~~~~~~~~----~P~~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~L  531 (566)
T 3fim_B          456 VKSNLRFLSGQAWADFVIRPF----DPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGL  531 (566)
T ss_dssp             HHHHHHHHTSGGGTTTEEEES----SGGGSCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSE
T ss_pred             HHHHHHHHhCcccCCcccccc----CCCcccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCc
Confidence            378899999999999986655    376 67889999999999999999999999999997777 999999999999999


Q ss_pred             EEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537          79 RIADASVMPYTVNANIHATCVMIGEKCADLIKQY  112 (117)
Q Consensus        79 ~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~  112 (117)
                      ||+|+||||.++++||++|+||+|||+||.|+++
T Consensus       532 rVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          532 RIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             EECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred             EEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999875

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.97  E-value=1.2e-32  Score=232.55  Aligned_cols=111  Identities=16%  Similarity=0.178  Sum_probs=100.4

Q ss_pred             ChHHHHHHcCcccccCcccccccccCCCCC---CCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCC
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVDAIVCDGFH---YDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLEN   77 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~n   77 (117)
                      +|.+|+|+++++|+++...+..    |+..   ..+|++|++|+|+...+.+|++|||+||+++.++|||++|||||++|
T Consensus       468 ~~~~~~i~~~~~~~~~~~~~~~----pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~  543 (583)
T 3qvp_A          468 TQLARNISNSGAMQTYFAGETI----PGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQG  543 (583)
T ss_dssp             HHHHHHHHTSTTHHHHEEEEEE----SGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBS
T ss_pred             HHHHHHHHhCcchhhccccccC----CCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCCCceECCCCeEecCCC
Confidence            3788999999999988765432    5432   47899999999999999999999999999878899999999999999


Q ss_pred             eEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537          78 VRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK  115 (117)
Q Consensus        78 L~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~  115 (117)
                      |||+|+||||.++++||++|+||+|||+||.|++++++
T Consensus       544 LrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~~~~  581 (583)
T 3qvp_A          544 LRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYAS  581 (583)
T ss_dssp             EEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeecccCCCCCCcCcHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999864

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.97  E-value=4e-32  Score=228.30  Aligned_cols=111  Identities=19%  Similarity=0.231  Sum_probs=100.9

Q ss_pred             hHHHHHHcCcccccCcccccccccCCCCCC---CCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCe
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHY---DSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENV   78 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL   78 (117)
                      |.+++|+++++|+++...+..    |+...   .+|++|++|+|+...+.+|++|||+||+++.+||||++|||||++||
T Consensus       473 ~~~~~i~~~~~~~~~~~~~~~----pg~~~~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~~sVVD~~lrV~Gv~nL  548 (587)
T 1gpe_A          473 KLARDLTSQGAMKEYFAGETL----PGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGL  548 (587)
T ss_dssp             HHHHHHHTSTTHHHHEEEEEE----SGGGSCTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSE
T ss_pred             HHHHHHHcCcchhhhcccccC----CCccccCCCCHHHHHHHHHHhcCcccCccCccccCCCCCCceECCCCEEECCCCc
Confidence            678999999999988765432    54443   79999999999999999999999999998889999999999999999


Q ss_pred             EEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhc
Q psy3537          79 RIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKS  116 (117)
Q Consensus        79 ~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~~  116 (117)
                      ||+|+||||+++++||++|+||+|||+||.|++++++|
T Consensus       549 rVvDaSv~P~~~~~Np~~ti~aiAeraAd~I~~~~~~~  586 (587)
T 1gpe_A          549 RVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKS  586 (587)
T ss_dssp             EECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEeeeccCCCCCCcchHHHHHHHHHHHHHHHHhhhhcC
Confidence            99999999999999999999999999999999998775

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.97  E-value=2e-31  Score=217.28  Aligned_cols=103  Identities=26%  Similarity=0.343  Sum_probs=93.1

Q ss_pred             hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEe
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIA   81 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~   81 (117)
                      |.+++|+++++|+.+...+.    .|+. ..+++++++|+|+...+.+|++|||+||+++ +||||++|||||++||||+
T Consensus       419 ~~~r~i~~~~~~~~~~~~~~----~pg~-~~~~~~~~~~ir~~~~t~~H~~GTcrMG~d~-~sVVD~~~rV~Gv~nL~Vv  492 (526)
T 3t37_A          419 EASRTIGHRDELAGWREREL----LPGT-PNSAAEMDDFIARSVITHHHPCGTCRMGKDP-DAVVDANLRLKALDNLFVV  492 (526)
T ss_dssp             HHHHHHHTCGGGTTTEEEEC----SSCC-CCSHHHHHHHHHHHEEECSCCBCTTCBCSST-TCSBCTTCBBTTCSSEEEC
T ss_pred             HHHHHHHcChhhhhcccccc----CCCC-CCCHHHHHHHHHhcCccCcccCccccCCCCC-CccCCCCCEEcCCCCeEEE
Confidence            67889999999999887655    2653 3689999999999999999999999999765 8999999999999999999


Q ss_pred             cCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q psy3537          82 DASVMPYTVNANIHATCVMIGEKCADLIK  110 (117)
Q Consensus        82 DaSv~P~~~~~np~~t~~~~a~r~a~~i~  110 (117)
                      |+||||+++++||++|+||||||+||+--
T Consensus       493 DaSv~P~~~~~np~~ti~aiAEkaAd~~~  521 (526)
T 3t37_A          493 DASIMPNLTAGPIHAAVLAIAETFARQYH  521 (526)
T ss_dssp             SGGGCSSCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             EcCcccCCcChHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999753

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.97  E-value=3.8e-31  Score=220.38  Aligned_cols=109  Identities=31%  Similarity=0.502  Sum_probs=96.6

Q ss_pred             hHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCCccccC-CCCCccccCCCeEeccCCeEE
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGD-NILTSVVNYKLQVHGLENVRI   80 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~-~~~~~VVD~~~~V~Gv~nL~V   80 (117)
                      |.+++|+++++|+++...+.    .|+....+|++|++|+++...+.+|++|||+||+ ++.++|||++|||||++||||
T Consensus       422 ~~~~~i~~~~~~~~~~~~~~----~p~~~~~sd~~~~~~ir~~~~~~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrV  497 (546)
T 2jbv_A          422 RKAREIAAQPAMAEWTGREL----SPGVEAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRV  497 (546)
T ss_dssp             HHHHHHHTSGGGTTTEEEEE----ESCTTCCSHHHHHHHHHHHCEECSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEE
T ss_pred             HHHHHHHcCcchhhcccccc----cCCCCCCCHHHHHHHHHhcCCcccccccccccCCCCCCCceECCCCEEECCCCeEE
Confidence            67899999999998876544    3777888999999999999999999999999997 678899999999999999999


Q ss_pred             ecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhh
Q psy3537          81 ADASVMPYTVNANIHATCVMIGEKCADLIKQYWE  114 (117)
Q Consensus        81 ~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~  114 (117)
                      +|+||||+++++||++|+||+|||+||.|++++.
T Consensus       498 vDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~  531 (546)
T 2jbv_A          498 ADASVMPEHVTVNPNITVMMIGERCADLIRSARA  531 (546)
T ss_dssp             CSGGGCSSCCSSCCHHHHHHHHHHHHHHC-----
T ss_pred             eecccCCCCCCcchHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999998874

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.96  E-value=5e-30  Score=211.97  Aligned_cols=87  Identities=20%  Similarity=0.229  Sum_probs=81.4

Q ss_pred             CCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHH
Q psy3537          27 DGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCA  106 (117)
Q Consensus        27 p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a  106 (117)
                      |+. ..+++++++|+++...+.+|++|||+||+++.++|||++|||||++||||+|+||||+++++||++|+||+|||+|
T Consensus       458 p~~-~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraA  536 (546)
T 1kdg_A          458 PDV-TQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAA  536 (546)
T ss_dssp             SCT-TSCHHHHHHHSCGGGGCCSCCBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHH
T ss_pred             CCC-CCCHHHHHHHHHHhcCcccccccceecCCCCCCeeECCCCeEccCCCcEEeEecccCCCCCccHHHHHHHHHHHHH
Confidence            443 3678999999999889999999999999988999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy3537         107 DLIKQYWE  114 (117)
Q Consensus       107 ~~i~~~~~  114 (117)
                      |.|+++++
T Consensus       537 d~I~~~~~  544 (546)
T 1kdg_A          537 AKILALAG  544 (546)
T ss_dssp             HHHHHSTT
T ss_pred             HHHHhhcC
Confidence            99998875

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.95  E-value=3.9e-28  Score=201.86  Aligned_cols=107  Identities=17%  Similarity=0.259  Sum_probs=90.3

Q ss_pred             hHHHHHHcCcccccCcccccc-ccc-------CCCCCCCCHHHHHHHHhcccCccccccCCccccCCCCCccccCCCeEe
Q psy3537           2 NDLNTMEMTLNFLNWPKTMVD-AIV-------CDGFHYDSDDYWKCTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVH   73 (117)
Q Consensus         2 ~~~~~i~~~~~~~~~~~~~~~-~~~-------~p~~~~~~~~~~~~~i~~~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~   73 (117)
                      |.+++|+++++|+++...+.. .+.       .|. ...+|++|++|+|+...+.+|++|||+||     +|||++||||
T Consensus       404 ~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~p~-~~~~d~~~~~~ir~~~~t~~H~~GTcrMG-----~VVD~~lrV~  477 (536)
T 1ju2_A          404 KKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPK-DQTDDAAFETFCRESVASYWHYHGGCLVG-----KVLDGDFRVT  477 (536)
T ss_dssp             HHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCS-CTTCHHHHHHHHHHHCEECSCCEESSCBT-----TTBCTTSBBT
T ss_pred             HHHHHHHcCccchhhhccccccCCCccccccCCCc-ccCCHHHHHHHHHhccCccccCcCccCCc-----cEECCCCeEc
Confidence            678999999999988765420 000       021 24689999999999999999999999999     6999999999


Q ss_pred             ccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHH-HHhh
Q psy3537          74 GLENVRIADASVMPYTVNANIHATCVMIGEKCADLIK-QYWE  114 (117)
Q Consensus        74 Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~-~~~~  114 (117)
                      |++||||+|+||||.++++||++|+||+|||+|+.|+ ++|+
T Consensus       478 Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~~~  519 (536)
T 1ju2_A          478 GINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSA  519 (536)
T ss_dssp             TCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999887765 4443

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.89  E-value=2.9e-24  Score=176.86  Aligned_cols=67  Identities=21%  Similarity=0.260  Sum_probs=63.2

Q ss_pred             ccCccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537          44 RSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK  115 (117)
Q Consensus        44 ~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~  115 (117)
                      ...+.+|++|||+||     +|||++|||||++||||+|+||||+++++||++|+||+|||+||.|++++.+
T Consensus       436 ~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~~  502 (504)
T 1n4w_A          436 ADDFCYHPLGGCVLG-----KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT  502 (504)
T ss_dssp             ECSEESSCBCSSCTT-----TTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ccCccccccCCceee-----eEECCCCeEeccCCeEEeeccccCCCCCcChHHHHHHHHHHHHHHHHHhhcc
Confidence            456889999999999     7999999999999999999999999999999999999999999999998864

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.87  E-value=4.5e-23  Score=170.03  Aligned_cols=65  Identities=17%  Similarity=0.147  Sum_probs=61.3

Q ss_pred             ccCccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          44 RSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        44 ~~~~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      ...+++|++|||+||     +|||++|||||++||||+|+||||+++++||++|+||+|||+||.|+++.
T Consensus       441 ~~~~~~H~~GTcrMG-----~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd~I~~~~  505 (507)
T 1coy_A          441 GDDFTYHPLGGVLLN-----KATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISSD  505 (507)
T ss_dssp             BCSEESCCBCSSCTT-----TTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccCCcchh-----heECCCCeEeccCCeEEeechhccCCCCcChHHHHHHHHHHHHHHHHHHh
Confidence            456889999999999     49999999999999999999999999999999999999999999998764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.85  E-value=5.9e-22  Score=167.78  Aligned_cols=70  Identities=26%  Similarity=0.336  Sum_probs=66.7

Q ss_pred             CccccccCCccccCC-CCCccc-cCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537          46 SSYYHLSSTARMGDN-ILTSVV-NYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK  115 (117)
Q Consensus        46 ~~~~H~~GT~~Mg~~-~~~~VV-D~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~  115 (117)
                      .+++|++|||+||.+ +.+||| |+++||||++||||+|+|+||+.+++||++|+||+|+|+|+.|++++++
T Consensus       544 ~~~~H~~gt~~mg~~~~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~~~~  615 (623)
T 3pl8_A          544 GLVLHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTP  615 (623)
T ss_dssp             TTTCCCBCTTCBCSSTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CCcccCCCceeCCCCCCCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHHhhc
Confidence            357999999999997 899998 9999999999999999999999999999999999999999999999865

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=83.59  E-value=2.3  Score=33.36  Aligned_cols=50  Identities=14%  Similarity=-0.007  Sum_probs=37.4

Q ss_pred             cccCCCeEeccCCeEEe-cCCCCCCCC-----CCCh--HHHHHHHHHHHHHHHHHHhh
Q psy3537          65 VVNYKLQVHGLENVRIA-DASVMPYTV-----NANI--HATCVMIGEKCADLIKQYWE  114 (117)
Q Consensus        65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~-----~~np--~~t~~~~a~r~a~~i~~~~~  114 (117)
                      +||+.+|+-+.+|+|.+ |++-+|...     ...|  ......-|.-+|+.|.+++.
T Consensus       276 ~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~  333 (430)
T 3hyw_A          276 IVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIR  333 (430)
T ss_dssp             CCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHHHhc
Confidence            68899999999999999 998888642     2222  33456678888888887653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=81.20  E-value=1.1  Score=36.33  Aligned_cols=44  Identities=25%  Similarity=0.168  Sum_probs=34.0

Q ss_pred             cccCCCeEeccCCeEEe-cCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy3537          65 VVNYKLQVHGLENVRIA-DASVMPYTVNANIHATCVMIGEKCADLIKQ  111 (117)
Q Consensus        65 VVD~~~~V~Gv~nL~V~-DaSv~P~~~~~np~~t~~~~a~r~a~~i~~  111 (117)
                      +||+.+|+.+.+|+|.+ |++..|..+.+   -..+.-|..+|+.|..
T Consensus       354 ~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a---~~A~qqg~~~A~ni~~  398 (502)
T 4g6h_A          354 AVNDFLQVKGSNNIFAIGDNAFAGLPPTA---QVAHQEAEYLAKNFDK  398 (502)
T ss_dssp             EBCTTSBBTTCSSEEECGGGEESSSCCCH---HHHHHHHHHHHHHHHH
T ss_pred             eECCccccCCCCCEEEEEcccCCCCCCch---HHHHHHHHHHHHHHHH
Confidence            58999999999999999 99888866643   2345667777777754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	3e-13
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	1e-11
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	2e-11
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	6e-11
d1gpea2	196	d.16.1.1 (A:329-524) Glucose oxidase {Penicillium	0.003

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 62.2 bits (150), Expect = 3e-13
 Identities = 12/63 (19%), Positives = 30/63 (47%)

Query: 54  TARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW 113
              M    +  VV+   +V+G++ +R+ D S+ P  +++++      +  K +D I + +
Sbjct: 322 LCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDY 381

Query: 114 EKS 116
              
Sbjct: 382 ASM 384

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 57.7 bits (138), Expect = 1e-11
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 31  YDSDDYWKCTIKRRSSSYYHLSSTARMGDN--ILTSVVNYKLQVHGLENVRIADASVMPY 88
                                  + RMG +       VN   +V G +N+ +     +P 
Sbjct: 289 NSGFGQLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPT 348

Query: 89  TVNANIHATCVMIGEKCADLIKQYWEKS 116
              AN   T + +  K  + IKQ +  S
Sbjct: 349 AYGANPTLTAMSLAIKSCEYIKQNFTPS 376

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 57.0 bits (136), Expect = 2e-11
 Identities = 15/71 (21%), Positives = 31/71 (43%)

Query: 39  CTIKRRSSSYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATC 98
             +  ++           +G +  ++VV+  ++V G  N+ I DA ++P+    N   T 
Sbjct: 283 AALPPQNQWINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTL 342

Query: 99  VMIGEKCADLI 109
           +   E+ A  I
Sbjct: 343 MSAAEQAAAKI 353

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 55.7 bits (133), Expect = 6e-11
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 62  LTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKS 116
           L  VV+   +V+G + +R+ D S+ P  V++++      +  K AD I   + KS
Sbjct: 336 LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKS 390

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 33.2 bits (75), Expect = 0.003
 Identities = 3/29 (10%), Positives = 9/29 (31%)

Query: 26  CDGFHYDSDDYWKCTIKRRSSSYYHLSST 54
            +     +   W   + +     +H  S+
Sbjct: 168 YNLVQNATLSQWSDYVLQNFRPNWHAVSS 196

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.78
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.66
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.38
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.33
d1gpea2	196	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.43
d1cf3a2	196	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.35
d1ju2a2	170	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.18
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.17
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.87
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	97.17
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	82.03

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.78  E-value=1e-19  Score=137.64  Aligned_cols=69  Identities=23%  Similarity=0.281  Sum_probs=61.4

Q ss_pred             ccccccCCccccCC--CCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhh
Q psy3537          47 SYYHLSSTARMGDN--ILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEK  115 (117)
Q Consensus        47 ~~~H~~GT~~Mg~~--~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~  115 (117)
                      ...|..|+++||.+  +.++|||+++||||++||||+|+|+||+.+.+||++|++|+|+|+|++|++.|..
T Consensus       305 ~~~~~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~~~  375 (379)
T d2f5va1         305 ELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNFTP  375 (379)
T ss_dssp             SSSTTTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHhhcc
Confidence            34567777777763  4679999999999999999999999999999999999999999999999999865

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.66  E-value=4.6e-17  Score=127.32  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=65.7

Q ss_pred             cccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhc
Q psy3537          48 YYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKS  116 (117)
Q Consensus        48 ~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~~  116 (117)
                      .-||.|+|.|..++.++|||+..+|+|++||||+|+||+|..+++|++++++++|||+||.|+++|.||
T Consensus       316 ~dlP~g~~~~~~~~~~~vv~~~~~v~g~~~lr~v~~s~~p~~~~~~~~~~~~~~a~~~~d~i~~~~~~~  384 (385)
T d1cf3a1         316 VDLPVGLCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMALKISDAILEDYASM  384 (385)
T ss_dssp             BCCCTTCTCBSCGGGTCSBCTTSBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EECCcchhccCCCCcccccccccccccccCeEeecCcCCcccccCchhHHHHHHhhhhHHHHHHHHhhc
Confidence            346789999999999999999999999999999999999999999999999999999999999999886

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.38  E-value=2.4e-13  Score=105.23  Aligned_cols=67  Identities=22%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             ccccccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          47 SYYHLSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        47 ~~~H~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      ...|+.|++.|+..+..+|||++++|+|.+||||+|+|+||..++.||+.++|++||++|++|++..
T Consensus       291 ~~~~p~g~~~~~~~~~~~v~~~~~~~~g~~~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~  357 (360)
T d1kdga1         291 WINLPVGMTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALA  357 (360)
T ss_dssp             CBCCCTTTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHST
T ss_pred             eecccceeeecCCCCcccEECccceeeccCCceEEeeecccccCCCCCCcchhHHHHHHHHHHhhcc
Confidence            3579999999999999999999999999999999999999999999999999999999999998754

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.33  E-value=6.9e-13  Score=103.87  Aligned_cols=66  Identities=26%  Similarity=0.300  Sum_probs=63.0

Q ss_pred             ccCCccccCCCCCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhhc
Q psy3537          51 LSSTARMGDNILTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYWEKS  116 (117)
Q Consensus        51 ~~GT~~Mg~~~~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~~~~  116 (117)
                      |.|.++|-.+..++|||++++|+|++||+++|+|++|..+++|++++++++||++|+.|+++|.||
T Consensus       325 P~Gvg~nl~dh~~~~v~~~~~v~~~~~l~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (391)
T d1gpea1         325 PVGICSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDYAKS  390 (391)
T ss_dssp             CTTCTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCSSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccCccceeeeeeeecCCCChhhhccccCccccccchhhhhhhhHhhhhHHHHHHhhhc
Confidence            469999988888899999999999999999999999999999999999999999999999999876

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.43  E-value=2e-08  Score=72.41  Aligned_cols=50  Identities=8%  Similarity=0.083  Sum_probs=42.5

Q ss_pred             ChHHHHHHcCcccccCcccccccccCCCCCC---CCHHHHHHHHhcccCccccccCC
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHY---DSDDYWKCTIKRRSSSYYHLSST   54 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~i~~~~~~~~H~~GT   54 (117)
                      +|.+|+|+++++|+++...+..    |+...   .+|++|++|||+...+.||++||
T Consensus       144 ~r~~~~i~~t~~l~~~~~~e~~----Pg~~~~~~~sde~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1gpea2         144 SKLARDLTSQGAMKEYFAGETL----PGYNLVQNATLSQWSDYVLQNFRPNWHAVSS  196 (196)
T ss_dssp             HHHHHHHHTSTTHHHHEEEEEE----SGGGSCTTCCHHHHHHHHHHSCEECSCCBCT
T ss_pred             HHHHHHHHhhHHHHhhcccccC----CCcccCCCCCHHHHHHHHHhcCeecccCCCC
Confidence            3789999999999998776552    65443   48999999999999999999998

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.35  E-value=5.8e-08  Score=69.85  Aligned_cols=50  Identities=12%  Similarity=0.019  Sum_probs=41.9

Q ss_pred             ChHHHHHHcCcccccCcccccccccCCCCCC---CCHHHHHHHHhcccCccccccCC
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHY---DSDDYWKCTIKRRSSSYYHLSST   54 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~i~~~~~~~~H~~GT   54 (117)
                      +|.+|+|+++++|+++...+..    |+...   .++++|++|||++..+.||++||
T Consensus       144 ~r~~~~i~~~~~~~~~~~~e~~----Pg~~~~~d~~~~~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1cf3a2         144 TQLARNISNSGAMQTYFAGETI----PGDNLAYDADLSAWTEYIPYHFRPNYHGVGT  196 (196)
T ss_dssp             HHHHHHHHTSGGGGGTEEEEEE----SGGGSCTTCCHHHHHHHGGGSCEECSCCBCT
T ss_pred             HHHHHHHHHhHHHHhccccccC----CCcCCCCchhHHHHHHHHHhcCeeccccCCC
Confidence            4789999999999999877653    54443   45789999999999999999998

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.18  E-value=4.2e-07  Score=64.38  Aligned_cols=54  Identities=11%  Similarity=0.122  Sum_probs=42.0

Q ss_pred             ChHHHHHHcCcccccCcccccccc------cCCCCC-CCCHHHHHHHHhcccCccccccCC
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVDAI------VCDGFH-YDSDDYWKCTIKRRSSSYYHLSST   54 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~~~------~~p~~~-~~~~~~~~~~i~~~~~~~~H~~GT   54 (117)
                      +|.+|+|+++++|+++...++...      ..|++. .++|++|++|+|+++.|.||++|+
T Consensus       110 ~~~~r~i~~~~~~~~~~~~e~~p~~~~~~~~~p~p~~~~dde~l~~~iR~~~~T~yHyhgg  170 (170)
T d1ju2a2         110 MKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGG  170 (170)
T ss_dssp             HHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCSCTTCHHHHHHHHHHHCEECSCCEES
T ss_pred             HHHHHHHHcChhhhhccccccccccccccccCCCccCCCCHHHHHHHHHhcCEeccCCCCc
Confidence            378999999999999988654210      023333 458999999999999999999985

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.17  E-value=1.5e-06  Score=65.19  Aligned_cols=51  Identities=24%  Similarity=0.316  Sum_probs=47.6

Q ss_pred             CCccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537          62 LTSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQY  112 (117)
Q Consensus        62 ~~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~  112 (117)
                      .+.+.|..++++|.+|+++.|++.+|.....||.+|+-++|||..+.|+++
T Consensus       314 l~~~~~~~g~~~~~~~~~~~~g~~i~~~~~~~p~~t~~ala~~~~~~~~~~  364 (367)
T d1n4wa1         314 LGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQ  364 (367)
T ss_dssp             TTTTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCccccCCccccCcCCCCcchhHHHHHHHHHHHHHHh
Confidence            357899999999999999999999999999999999999999999998765

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.87  E-value=8e-06  Score=61.18  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             CccccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy3537          63 TSVVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQY  112 (117)
Q Consensus        63 ~~VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~  112 (117)
                      +..+|..++++|..+++|+|+|.+|-..+.||-+|+.++|||.-++|+++
T Consensus       319 ~~~~~~~g~~~~~~~~~~~d~~~~pg~~~~np~~t~~a~a~~~~~~~~~~  368 (370)
T d3coxa1         319 NKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIISS  368 (370)
T ss_dssp             TTTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccCCCCceEeecccccCccCcCchhhHHHHHHHHHHHHHhh
Confidence            46678889999999999999999999999999999999999999998764

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.17  E-value=4.3e-05  Score=53.21  Aligned_cols=45  Identities=9%  Similarity=0.006  Sum_probs=36.8

Q ss_pred             ChHHHHHHcCcccccCcccccccccCCCCCCCCHHHHHHHHhcccCccccccCC
Q psy3537           1 MNDLNTMEMTLNFLNWPKTMVDAIVCDGFHYDSDDYWKCTIKRRSSSYYHLSST   54 (117)
Q Consensus         1 ~~~~~~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~H~~GT   54 (117)
                      +|++|++++++++..+..        |+. ..++|++.+|+++...+.+|++||
T Consensus       137 i~~~r~~~~~~p~~~~~~--------p~~-~~t~~~~~~~~~~~~~~~~H~vGT  181 (181)
T d1kdga2         137 LHDVVSNIGSIPGLTMIT--------PDV-TQTLEEYVDAYDPATMNSNHWVSS  181 (181)
T ss_dssp             HHHHTTTGGGSTTCEEEE--------SCT-TSCHHHHHHHSCGGGGCCSCCBCT
T ss_pred             HHHHHHHHcCCCCCcccc--------CCC-CCCHHHHHHHHHHhCCcccCCCCC
Confidence            378889999988876632        543 368999999999999999999998

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=82.03  E-value=1.1  Score=32.66  Aligned_cols=49  Identities=27%  Similarity=0.426  Sum_probs=42.2

Q ss_pred             cccCCCeEeccCCeEEecCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q psy3537          65 VVNYKLQVHGLENVRIADASVMPYTVNANIHATCVMIGEKCADLIKQYW  113 (117)
Q Consensus        65 VVD~~~~V~Gv~nL~V~DaSv~P~~~~~np~~t~~~~a~r~a~~i~~~~  113 (117)
                      +.....+|.|.+++++.+.+.+|..+..+|+...++++...+-.++...
T Consensus       299 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~g~~~~~~~  347 (351)
T d1ju2a1         299 VLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQER  347 (351)
T ss_dssp             TBCTTSBBTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEcccccccccccccCccccccccccceEecCCceEEEEeecc
Confidence            3445678889999999999999999999999999999998888776654