Psyllid ID: psy3564

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDKPSQHGAVEY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEc
Coil and Loop (DISEMBL)
MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYeyysvpsgnmgvfdptelynrdsiKNHMRNCLIGMGFYLVIFFVYLYSMILSLlrdnpldkpsqhgavey
Flexible Loop (DISEMBL)
MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRdnpldkpsqhgavey
Low Complexity Region (SEG)
MGAQvgvtvlllltgHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDKPSQHGAVEY
Disordered region (IsUnstruct)
****VGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLR***************
Disordered Region (DISOPRED)
*GAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRD*************Y
Disordered Region (DISEMBL)
MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDK*********
Disordered Region (DISPRO)
MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDKPSQHGAV*Y
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDKPSQHGAVEY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q3T126	139	Protein cornichon homolog	yes	N/A	0.803	0.589	0.585	2e-25
Q5R9M4	139	Protein cornichon homolog	yes	N/A	0.803	0.589	0.585	4e-25
Q9P003	139	Protein cornichon homolog	yes	N/A	0.803	0.589	0.585	4e-25
Q9CX13	139	Protein cornichon homolog	yes	N/A	0.803	0.589	0.573	6e-25
Q6P3N5	139	Protein cornichon homolog	yes	N/A	0.803	0.589	0.536	2e-24
Q22361	145	Uncharacterized protein T	yes	N/A	0.794	0.558	0.380	1e-08
P53173	138	ER-derived vesicles prote	yes	N/A	0.794	0.586	0.321	3e-08
P49858	144	Protein cornichon OS=Dros	no	N/A	0.803	0.569	0.317	5e-07
P52159	144	Protein cornichon OS=Dros	N/A	N/A	0.696	0.493	0.337	2e-06
Q5RDB5	144	Protein cornichon homolog	no	N/A	0.784	0.555	0.325	9e-05

>sp|Q3T126|CNIH4_BOVIN Protein cornichon homolog 4 OS=Bos taurus GN=CNIH4 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 71/82 (86%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVL+L++ H+++FL+N+P++AWN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLMLISLHWFIFLLNLPVAAWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALIND 139

Bos taurus (taxid: 9913)

>sp|Q5R9M4|CNIH4_PONAB Protein cornichon homolog 4 OS=Pongo abelii GN=CNIH4 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVLLL++ H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALIND 139

Pongo abelii (taxid: 9601)

>sp|Q9P003|CNIH4_HUMAN Protein cornichon homolog 4 OS=Homo sapiens GN=CNIH4 PE=1 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVLLL++ H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALIND 139

Homo sapiens (taxid: 9606)

>sp|Q9CX13|CNIH4_MOUSE Protein cornichon homolog 4 OS=Mus musculus GN=Cnih4 PE=2 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVL+L++ H+++FL+N+P++ WN+Y +  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLMLVSLHWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GFYL+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFYLLCFFMYLYSMILALIND 139

Mus musculus (taxid: 10090)

>sp|Q6P3N5|CNIH4_XENTR Protein cornichon homolog 4 OS=Xenopus tropicalis GN=cnih4 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 71/82 (86%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           V+VL+L++ H+++F++N+P++AWN+Y +  VPSGN+GVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VSVLMLVSLHWFIFILNLPVAAWNIYRFIMVPSGNLGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFIYLYSMILALIND 139

Xenopus tropicalis (taxid: 8364)

>sp|Q22361|YFR3_CAEEL Uncharacterized protein T09E8.3 OS=Caenorhabditis elegans GN=T09E8.3 PE=3 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 8   TVLLLLTGHYYLFLMNVPMSAWNVYEYYSVP--SGNMGVFDPTELYNRDSIKNHMRNCLI 65
           TVL + +      L N+P++ +++Y Y   P  SG  G++DPT + NR ++ + +R   I
Sbjct: 63  TVLFIFSWQLISILANLPLAFYHIYTYAKRPVMSGP-GIYDPTTILNRSTLSSTLRISWI 121

Query: 66  GMGFYLVIFFVYLYSMILSLLRDN 89
            + FYLV FF YLY+MI +L+  N
Sbjct: 122 KLAFYLVSFFYYLYAMIYTLVTSN 145

Caenorhabditis elegans (taxid: 6239)

>sp|P53173|ERV14_YEAST ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 58/87 (66%), Gaps = 6/87 (6%)

Query: 6   GVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLI 65
            +++L LL G++++FL+N+P+ A+N+ + Y+     + + D TE++   ++  H R   +
Sbjct: 57  ALSLLFLLNGYWFVFLLNLPVLAYNLNKIYN----KVQLLDATEIFR--TLGKHKRESFL 110

Query: 66  GMGFYLVIFFVYLYSMILSLLRDNPLD 92
            +GF+L++FF YLY MI++L+ ++  D
Sbjct: 111 KLGFHLLMFFFYLYRMIMALIAESGDD 137

Could regulate export of the bud site and axial growth sites selection protein AXL2 and possibly other secretory proteins from the endoplasmic reticulum in COPII-coated vesicles. Seems to be required for axial budding pattern in haploid cells.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P49858|CNI_DROME Protein cornichon OS=Drosophila melanogaster GN=cni PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 4   QVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVP--SGNMGVFDPTELYNRDSIKNHMR 61
            + + +L L  G ++   +N+P+ A++++ Y + P  SG  G++DPT +   D++  +MR
Sbjct: 59  HIFLNLLFLFCGEWFSLCINIPLIAYHIWRYKNRPVMSGP-GLYDPTTVLKTDTLYRNMR 117

Query: 62  NCLIGMGFYLVIFFVYLYSMILSLL 86
              I +  YL+ FF Y+Y M+ SL+
Sbjct: 118 EGWIKLAVYLISFFYYIYGMVYSLI 142

Acts as cargo receptor necessary for the transportation of gurken (grk) to a transitional endoplasmic reticulum (tER) site and promotes its incorporation into coat protein complex II (COPII) vesicles. Associated with gurken, produces a signal received by torpedo resulting in a signaling pathway that first establishes posterior follicle cell fates and normal localization of the anterior and posterior determinants, later they act in a signaling event inducing dorsal follicle cell fates and regulating the dorsal-ventral pattern of egg and embryo.

Drosophila melanogaster (taxid: 7227)

>sp|P52159|CNI_DROVI Protein cornichon OS=Drosophila virilis GN=cni PE=3 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 15  GHYYLFLMNVPMSAWNVYEYYSVP--SGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLV 72
           G +Y   +N+P+ A++++ Y + P  SG  G++DPT +   D++  ++R   I +  YL+
Sbjct: 70  GEWYSLCLNIPLIAYHIWRYKNRPLMSGP-GLYDPTTVLKTDTLSRNLREGWIKLAVYLI 128

Query: 73  IFFVYLYSMILSLL 86
            FF Y+Y M+ SL+
Sbjct: 129 SFFYYIYGMVYSLI 142

Acts as cargo receptor necessary for the transportation of gurken (grk) to a transitional endoplasmic reticulum (tER) site and promotes its incorporation into coat protein complex II (COPII) vesicles. Associated with gurken, produces a signal received by torpedo resulting in a signaling pathway that first establishes posterior follicle cell fates and normal localization of the anterior and posterior determinants, later they act in a signaling event inducing dorsal follicle cell fates and regulating the dorsal-ventral pattern of egg and embryo.

Drosophila virilis (taxid: 7244)

>sp|Q5RDB5|CNIH_PONAB Protein cornichon homolog OS=Pongo abelii GN=CNIH PE=2 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 8   TVLLLLTGHYYLFLMNVPMSAWNVYEYYSVP--SGNMGVFDPTELYNRDSIKNHMRNCLI 65
            V+ L    +    +N+P+ A++++ Y S P  SG  G++DPT + N D +    +    
Sbjct: 63  CVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGP-GLYDPTTIMNADILAYCQKEGWC 121

Query: 66  GMGFYLVIFFVYLYSMILSLLRD 88
            + FYL+ FF YLY MI  L+  
Sbjct: 122 KLAFYLLAFFYYLYGMIYVLVSS 144

Involved in the selective transport and maturation of TGF-alpha family proteins.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
242024906	153	cornichon, putative [Pediculus humanus c	0.980	0.653	0.55	5e-27
321475276	156	hypothetical protein DAPPUDRAFT_193338 [	0.892	0.583	0.527	3e-24
77735629	139	protein cornichon homolog 4 [Bos taurus]	0.803	0.589	0.585	7e-24
118791650	156	AGAP009116-PA [Anopheles gambiae str. PE	0.980	0.641	0.48	8e-24
114572861	139	PREDICTED: uncharacterized protein LOC73	0.803	0.589	0.585	1e-23
397487765	139	PREDICTED: protein cornichon homolog 4 [	0.803	0.589	0.585	1e-23
7661824	139	protein cornichon homolog 4 [Homo sapien	0.803	0.589	0.585	2e-23
148681183	198	cornichon homolog 4 (Drosophila), isofor	0.803	0.414	0.573	2e-23
62896827	139	HSPC163 protein variant [Homo sapiens]	0.803	0.589	0.585	2e-23
68131553	139	protein cornichon homolog 4 [Mus musculu	0.803	0.589	0.573	2e-23

>gi|242024906|ref|XP_002432867.1| cornichon, putative [Pediculus humanus corporis] gi|212518376|gb|EEB20129.1| cornichon, putative [Pediculus humanus corporis]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/100 (55%), Positives = 76/100 (76%)

Query: 1   MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHM 60
           +GA V +T+LLL    + L + NVP++AW  YE+YSVP GNMGV+DPTE+YNR  +K HM
Sbjct: 53  LGAHVSLTLLLLCYSRWMLAIANVPLAAWLAYEFYSVPKGNMGVYDPTEIYNRGQLKKHM 112

Query: 61  RNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDKPSQHGAV 100
           R+C+I +G+YLV FFVYLY +I+SLL+ NPL++     +V
Sbjct: 113 RDCMIFLGYYLVFFFVYLYCLIISLLKGNPLERDEPEMSV 152

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321475276|gb|EFX86239.1| hypothetical protein DAPPUDRAFT_193338 [Daphnia pulex]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 72/91 (79%)

Query: 3   AQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRN 62
           A +   +LL  TGH+++ L ++P++ W +YE++SVP GNMGV+DPTE+YNR  +K HMR+
Sbjct: 55  AHLITVILLSFTGHWWIVLTSLPVTLWLIYEWFSVPKGNMGVYDPTEIYNRGQLKRHMRD 114

Query: 63  CLIGMGFYLVIFFVYLYSMILSLLRDNPLDK 93
           C+IG+G+YL++FFV+LY MILS+L  +P  K
Sbjct: 115 CMIGLGYYLIMFFVFLYCMILSMLAGDPRHK 145

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77735629|ref|NP_001029510.1| protein cornichon homolog 4 [Bos taurus] gi|110278915|sp|Q3T126.1|CNIH4_BOVIN RecName: Full=Protein cornichon homolog 4 gi|74353927|gb|AAI02153.1| Cornichon homolog 4 (Drosophila) [Bos taurus] gi|296479262|tpg|DAA21377.1| TPA: protein cornichon homolog 4 [Bos taurus]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 71/82 (86%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVL+L++ H+++FL+N+P++AWN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLMLISLHWFIFLLNLPVAAWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALIND 139

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|118791650|ref|XP_319866.3| AGAP009116-PA [Anopheles gambiae str. PEST] gi|116117704|gb|EAA14707.3| AGAP009116-PA [Anopheles gambiae str. PEST]

 Score =  114 bits (284), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 74/100 (74%)

Query: 1   MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHM 60
           + A   +T +LL+ GH+ L L+N+PM  W VYE Y VP+GN+G++DP E++NR  +K H+
Sbjct: 54  LAAHAFLTFVLLIHGHWMLCLVNLPMVGWLVYEQYRVPAGNIGIYDPAEIHNRGMVKKHL 113

Query: 61  RNCLIGMGFYLVIFFVYLYSMILSLLRDNPLDKPSQHGAV 100
           R+ +IG+GFYL+IFFVYLY MI++LL+ +P+ +  +   V
Sbjct: 114 RDTMIGLGFYLIIFFVYLYCMIIALLKGDPIRRHEEEEIV 153

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114572861|ref|XP_001136032.1| PREDICTED: uncharacterized protein LOC736006 isoform 5 [Pan troglodytes]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVLLL++ H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLLLISLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALIND 139

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397487765|ref|XP_003814952.1| PREDICTED: protein cornichon homolog 4 [Pan paniscus] gi|426333912|ref|XP_004028510.1| PREDICTED: protein cornichon homolog 4 [Gorilla gorilla gorilla] gi|410212586|gb|JAA03512.1| cornichon homolog 4 [Pan troglodytes] gi|410255346|gb|JAA15640.1| cornichon homolog 4 [Pan troglodytes] gi|410287882|gb|JAA22541.1| cornichon homolog 4 [Pan troglodytes] gi|410329513|gb|JAA33703.1| cornichon homolog 4 [Pan troglodytes]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVLLL++ H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLLLISLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALIND 139

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|7661824|ref|NP_054903.1| protein cornichon homolog 4 [Homo sapiens] gi|197101373|ref|NP_001125902.1| protein cornichon homolog 4 [Pongo abelii] gi|12229837|sp|Q9P003.1|CNIH4_HUMAN RecName: Full=Protein cornichon homolog 4 gi|62900351|sp|Q5R9M4.1|CNIH4_PONAB RecName: Full=Protein cornichon homolog 4 gi|6841548|gb|AAF29127.1|AF161512_1 HSPC163 [Homo sapiens] gi|12653595|gb|AAH00573.1| Cornichon homolog 4 (Drosophila) [Homo sapiens] gi|55729614|emb|CAH91536.1| hypothetical protein [Pongo abelii] gi|117645126|emb|CAL38029.1| hypothetical protein [synthetic construct] gi|119590123|gb|EAW69717.1| cornichon homolog 4 (Drosophila), isoform CRA_a [Homo sapiens] gi|123981996|gb|ABM82827.1| cornichon homolog 4 (Drosophila) [synthetic construct] gi|123996823|gb|ABM86013.1| cornichon homolog 4 (Drosophila) [synthetic construct] gi|189065277|dbj|BAG35000.1| unnamed protein product [Homo sapiens]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVLLL++ H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALIND 139

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148681183|gb|EDL13130.1| cornichon homolog 4 (Drosophila), isoform CRA_b [Mus musculus]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVL+L++ H+++FL+N+P++ WN+Y +  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 117 VTVLMLVSLHWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 176

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GFYL+ FF+YLYSMIL+L+ D
Sbjct: 177 LGFYLLCFFMYLYSMILALIND 198

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|62896827|dbj|BAD96354.1| HSPC163 protein variant [Homo sapiens]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVLLL++ H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GF+L+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFHLLCFFMYLYSMILALVND 139

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|68131553|ref|NP_084407.1| protein cornichon homolog 4 [Mus musculus] gi|62900373|sp|Q9CX13.1|CNIH4_MOUSE RecName: Full=Protein cornichon homolog 4 gi|12862150|dbj|BAB32366.1| unnamed protein product [Mus musculus] gi|41223370|gb|AAH65395.1| Cornichon homolog 4 (Drosophila) [Mus musculus] gi|74138503|dbj|BAE38062.1| unnamed protein product [Mus musculus] gi|74141697|dbj|BAE38600.1| unnamed protein product [Mus musculus] gi|74184420|dbj|BAE25737.1| unnamed protein product [Mus musculus]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 70/82 (85%)

Query: 7   VTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIG 66
           VTVL+L++ H+++FL+N+P++ WN+Y +  VPSGNMGVFDPTE++NR  +K+HM+  +I 
Sbjct: 58  VTVLMLVSLHWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIK 117

Query: 67  MGFYLVIFFVYLYSMILSLLRD 88
           +GFYL+ FF+YLYSMIL+L+ D
Sbjct: 118 LGFYLLCFFMYLYSMILALIND 139

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
UNIPROTKB|Q3T126	139	CNIH4 "Protein cornichon homol	0.715	0.525	0.589	1.1e-23
MGI|MGI:1925828	139	Cnih4 "cornichon homolog 4 (Dr	0.715	0.525	0.575	2.3e-23
UNIPROTKB|Q9P003	139	CNIH4 "Protein cornichon homol	0.715	0.525	0.575	2.9e-23
RGD|1559740	139	Cnih4 "cornichon homolog 4 (Dr	0.715	0.525	0.575	6.1e-23
UNIPROTKB|E1C103	139	CNIH4 "Uncharacterized protein	0.715	0.525	0.561	7.8e-23
UNIPROTKB|F1PIR0	116	CNIH4 "Uncharacterized protein	0.715	0.629	0.561	1.3e-22
UNIPROTKB|A6NLH6	137	CNIH4 "Protein cornichon homol	0.637	0.474	0.569	1.7e-20
FB|FBgn0243513	157	cnir "cornichon related" [Dros	0.764	0.496	0.410	6e-16
UNIPROTKB|I3LD23	53	CNIH4 "Uncharacterized protein	0.509	0.981	0.634	2.6e-15
WB|WBGene00011648	145	cnih-2 [Caenorhabditis elegans	0.666	0.468	0.408	5.2e-10

UNIPROTKB|Q3T126 CNIH4 "Protein cornichon homolog 4" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 43/73 (58%), Positives = 63/73 (86%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+++FL+N+P++AWN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I +GF+L+ FF
Sbjct:    67 HWFIFLLNLPVAAWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFF 126

Query:    76 VYLYSMILSLLRD 88
             +YLYSMIL+L+ D
Sbjct:   127 MYLYSMILALIND 139

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

MGI|MGI:1925828 Cnih4 "cornichon homolog 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 42/73 (57%), Positives = 62/73 (84%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+++FL+N+P++ WN+Y +  VPSGNMGVFDPTE++NR  +K+HM+  +I +GFYL+ FF
Sbjct:    67 HWFIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFYLLCFF 126

Query:    76 VYLYSMILSLLRD 88
             +YLYSMIL+L+ D
Sbjct:   127 MYLYSMILALIND 139

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|Q9P003 CNIH4 "Protein cornichon homolog 4" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 42/73 (57%), Positives = 62/73 (84%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I +GF+L+ FF
Sbjct:    67 HWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFF 126

Query:    76 VYLYSMILSLLRD 88
             +YLYSMIL+L+ D
Sbjct:   127 MYLYSMILALIND 139

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1559740 Cnih4 "cornichon homolog 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 42/73 (57%), Positives = 61/73 (83%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+ +FL+N+P++ WN+Y +  VPSGNMGVFDPTE++NR  +K+HM+  +I +GFYL+ FF
Sbjct:    67 HWVIFLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFYLLCFF 126

Query:    76 VYLYSMILSLLRD 88
             +YLYSMIL+L+ D
Sbjct:   127 MYLYSMILALIND 139

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E1C103 CNIH4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 41/73 (56%), Positives = 62/73 (84%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+++FL+N+P++ WN+Y +  VPSGNMGVFDPTE++NR  +K+HM+  +I +GF+L+ FF
Sbjct:    67 HWFIFLLNLPIATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFF 126

Query:    76 VYLYSMILSLLRD 88
             +YLYSMIL+L+ D
Sbjct:   127 MYLYSMILALIND 139

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1PIR0 CNIH4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 41/73 (56%), Positives = 61/73 (83%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+++FL+N+P + WN+Y +  VPSGNMGVFDPTE++NR  +K+HM+  +I +GF+L+ FF
Sbjct:    44 HWFIFLLNLPAATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFF 103

Query:    76 VYLYSMILSLLRD 88
             +YLYSMIL+L+ D
Sbjct:   104 MYLYSMILALIND 116

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|A6NLH6 CNIH4 "Protein cornichon homolog 4" [Homo sapiens (taxid:9606)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 37/65 (56%), Positives = 55/65 (84%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+++FL+N+P++ WN+Y Y  VPSGNMGVFDPTE++NR  +K+HM+  +I +GF+L+ FF
Sbjct:    67 HWFIFLLNLPVATWNIYRYIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFF 126

Query:    76 VYLYS 80
             +YLYS
Sbjct:   127 MYLYS 131

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

FB|FBgn0243513 cnir "cornichon related" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 32/78 (41%), Positives = 56/78 (71%)

Query:    16 HYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFF 75
             H+ +FL+N+PM  W  YE +     ++GV+DP ++++R  +K H+RNC+I +G+Y V+FF
Sbjct:    70 HWVMFLLNLPMVIWLFYELHRQRRDSLGVYDPVDIHSRGLLKVHLRNCMIYLGYYFVMFF 129

Query:    76 VYLYSMILSLLRDNPLDK 93
             V LY +I SL++ +P+ +
Sbjct:   130 VGLYCLISSLIKGDPIKR 147

GO:0016020 "membrane" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IMP

UNIPROTKB|I3LD23 CNIH4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 33/52 (63%), Positives = 45/52 (86%)

Query:    37 VPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYSMILSLLRD 88
             VPSGNMGVFDPTE++NR  +K+HM+  +I +GF+L+ FF+YLYSMIL+L+ D
Sbjct:     2 VPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIND 53

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00011648 cnih-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/71 (40%), Positives = 46/71 (64%)

Query:    21 LMNVPMSAWNVYEYYSVP--SGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYL 78
             L N+P++ +++Y Y   P  SG  G++DPT + NR ++ + +R   I + FYLV FF YL
Sbjct:    76 LANLPLAFYHIYTYAKRPVMSGP-GIYDPTTILNRSTLSSTLRISWIKLAFYLVSFFYYL 134

Query:    79 YSMILSLLRDN 89
             Y+MI +L+  N
Sbjct:   135 YAMIYTLVTSN 145

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R9M4	CNIH4_PONAB	No assigned EC number	0.5853	0.8039	0.5899	yes	N/A
Q9CX13	CNIH4_MOUSE	No assigned EC number	0.5731	0.8039	0.5899	yes	N/A
Q9P003	CNIH4_HUMAN	No assigned EC number	0.5853	0.8039	0.5899	yes	N/A
Q3T126	CNIH4_BOVIN	No assigned EC number	0.5853	0.8039	0.5899	yes	N/A
Q6P3N5	CNIH4_XENTR	No assigned EC number	0.5365	0.8039	0.5899	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
pfam03311	128	pfam03311, Cornichon, Cornichon protein	4e-20

>gnl|CDD|217486 pfam03311, Cornichon, Cornichon protein

 Score = 78.0 bits (193), Expect = 4e-20
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 6/80 (7%)

Query: 1   MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHM 60
                 + +L LLTGH+++FL+N+P+ A+NVY YY        + D TE++    +  H 
Sbjct: 55  YILHGFLCLLFLLTGHWFVFLLNLPLLAYNVYLYYKRT----HLLDATEIFRT--LSKHK 108

Query: 61  RNCLIGMGFYLVIFFVYLYS 80
           R   I + FYL++FF YLY 
Sbjct: 109 RESFIKLAFYLLLFFYYLYR 128

Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
KOG2729|consensus	137		100.0
PLN00174	160	predicted protein; Provisional	100.0
PF03311	128	Cornichon: Cornichon protein; InterPro: IPR003377	99.96

>KOG2729|consensus

Probab=100.00  E-value=1.1e-37  Score=224.33  Aligned_cols=82  Identities=39%  Similarity=0.803  Sum_probs=79.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccccccccccHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3564           1 MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYS   80 (102)
Q Consensus         1 ~i~h~~l~~lfLl~g~W~~~llnlPll~y~~~~y~~r~~~~~~l~D~TeIfn~~~L~~~kke~~iKLafYll~FF~yLy~   80 (102)
                      +++||++|++||++|||+++++|+|+++||+++|++||    |++|||||||  +|++||||||+|||||+++||+|+||
T Consensus        56 ~ilh~~KOGlfLl~g~W~~fllnlP~l~y~~~~y~~r~----~l~D~TeI~n--~L~~~~k~~~~KL~fyll~FF~yly~  129 (137)
T KOG2729|consen   56 FILHGLLCLLFLLTGHWFMFLLNLPLLAYNAWLYMKRP----HLYDPTEIFN--TLSSEKKERWIKLAFYLLSFFYYLYW  129 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcCC----cccCHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999997    6999999999  99999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy3564          81 MILSLLRD   88 (102)
Q Consensus        81 mI~~lv~~   88 (102)
                      ||+++|++
T Consensus       130 mI~slv~~  137 (137)
T KOG2729|consen  130 MIYSLVSS  137 (137)
T ss_pred             HHHHHhcC
Confidence            99999975

>PLN00174 predicted protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=211.52  Aligned_cols=78  Identities=17%  Similarity=0.398  Sum_probs=75.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccccccccccHHhHhHHHHHHHHHHHHHHHHHHHHHH-
Q psy3564           1 MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLY-   79 (102)
Q Consensus         1 ~i~h~~l~~lfLl~g~W~~~llnlPll~y~~~~y~~r~~~~~~l~D~TeIfn~~~L~~~kke~~iKLafYll~FF~yLy-   79 (102)
                      +++|+++|++||++|||+++++|+|+++||++||.+||    |++|||||||  +|++||||||+|||||+++||+|+| 
T Consensus        61 yiiH~~l~lLfLltG~W~~fLLNlPll~Yhv~~y~~r~----hL~D~TeIfn--~L~~~kKe~~iKLaFYLl~FF~~ly~  134 (160)
T PLN00174         61 YLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQWYEGK----HQLDSAQIFN--VLSRELRVIKAKSAFFIIIVIYTIWE  134 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999875    8999999999  7999999999999999999999999 


Q ss_pred             HHHHH
Q psy3564          80 SMILS   84 (102)
Q Consensus        80 ~mI~~   84 (102)
                      |||++
T Consensus       135 ~mI~~  139 (160)
T PLN00174        135 WMIWV  139 (160)
T ss_pred             HHHcC
Confidence            99987

>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling

Probab=99.96  E-value=1.3e-29  Score=179.96  Aligned_cols=74  Identities=41%  Similarity=0.917  Sum_probs=71.4

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCcccccccccccHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy3564           1 MGAQVGVTVLLLLTGHYYLFLMNVPMSAWNVYEYYSVPSGNMGVFDPTELYNRDSIKNHMRNCLIGMGFYLVIFFVYLYS   80 (102)
Q Consensus         1 ~i~h~~l~~lfLl~g~W~~~llnlPll~y~~~~y~~r~~~~~~l~D~TeIfn~~~L~~~kke~~iKLafYll~FF~yLy~   80 (102)
                      +++|+++|++++++|||+++++|+|+++||+++|.+|    +|++|||||||  +|++|||||++|+|||+++||+|+||
T Consensus        55 ~~~h~~l~~l~ll~g~w~~~llnlPl~~y~~~~~~~~----~~l~D~T~If~--~L~~~kk~~~iKl~~yll~ff~yly~  128 (128)
T PF03311_consen   55 YIIHGFLCLLFLLTGHWFLFLLNLPLLAYHIYRYFRR----QHLYDPTEIFN--QLKREKKESFIKLGFYLLLFFYYLYR  128 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CccccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999999999999999998    48999999999  79999999999999999999999997

The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00