Psyllid ID: psy3570

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Secondary Structure (PSIPRED)
cccccccEEEEcccccHHHHHHHHHHcccccEEEEEccccccccEEEEEEccEEEEcccccHHHHHHHHHHcccEEEEEEEccccEEEEEEEEEcccEEEcccccHHHHHHHHHHccccEEEEEEEccccccEEEEEEEccEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
HcEEcccEEEEEccccHHHHHHHHHHcccccEEEEEccccccHHHHEEEcccEEEEcccccHHHHHHHHHHHccEEEEccEccEccHHHcEEEccccEEEcccccHHHHHHHHHHHcccEEEccEcccEccHHHHEEEccccEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msvgnrhglivpnattdtELQHIRnslpdsvkLQRVEERLSALGnviacndyvalvhpdldreTEEILADTLNVEVFRQTVSSNVLVGSYCaltnqgglvhphtspqdqdeLSSLlqiplvagtvnrgsevigagmvvndwaafcgfdttstEISVIESVFKlneaqpsaiTTSMRASLIDSIA
Flexible Loop (DISEMBL)
msvgnrhglivpnattdtelqhirnslpdsvkLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKlneaqpsaittsmraslidsia
Low Complexity Region (SEG)
MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Disordered region (IsUnstruct)
********************************LQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH************SLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLN********************
Disordered Region (DISOPRED)
MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Disordered Region (DISEMBL)
MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH*********ELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Disordered Region (DISPRO)
MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
Q6ZM19	245	Eukaryotic translation in	yes	N/A	0.994	0.746	0.841	5e-88
P56537	245	Eukaryotic translation in	yes	N/A	0.994	0.746	0.830	5e-87
O55135	245	Eukaryotic translation in	yes	N/A	0.994	0.746	0.830	5e-87
Q3KRD8	245	Eukaryotic translation in	yes	N/A	0.994	0.746	0.830	6e-87
Q9TU47	245	Eukaryotic translation in	yes	N/A	0.994	0.746	0.830	8e-87
Q6GR45	245	Eukaryotic translation in	N/A	N/A	0.994	0.746	0.825	9e-87
P56538	245	Eukaryotic translation in	yes	N/A	1.0	0.751	0.760	5e-82
Q12522	245	Eukaryotic translation in	yes	N/A	1.0	0.751	0.722	6e-78
Q9M060	245	Eukaryotic translation in	yes	N/A	0.989	0.742	0.719	1e-77
O94476	244	Eukaryotic translation in	yes	N/A	0.983	0.741	0.736	2e-77

>sp|Q6ZM19|IF6_DANRE Eukaryotic translation initiation factor 6 OS=Danio rerio GN=eif6 PE=2 SV=1

 Score =  323 bits (827), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 154/183 (84%), Positives = 166/183 (90%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VPN TTD ELQHIRN LPDSV++QRVEERLSALGNVIACNDYVALVHPDL
Sbjct: 62  MCVGNRHGLLVPNNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILADTL VEVFRQTV+  VLVGSYCA +NQGGLVH  TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADTLKVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SVIESVF+L+E QPSAI T+MR SLI
Sbjct: 182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSLI 241

Query: 181 DSI 183
           DS+
Sbjct: 242 DSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
Danio rerio (taxid: 7955)

>sp|P56537|IF6_HUMAN Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1

 Score =  319 bits (818), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 164/183 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VPN TTD ELQHIRNSLPD+V+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct: 62  MCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SLI
Sbjct: 182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLI 241

Query: 181 DSI 183
           DS+
Sbjct: 242 DSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Homo sapiens (taxid: 9606)

>sp|O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2

 Score =  319 bits (818), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 164/183 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct: 62  MCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SLI
Sbjct: 182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLI 241

Query: 181 DSI 183
           DS+
Sbjct: 242 DSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Mus musculus (taxid: 10090)

>sp|Q3KRD8|IF6_RAT Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=2 SV=1

 Score =  319 bits (818), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 164/183 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct: 62  MCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SLI
Sbjct: 182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLI 241

Query: 181 DSI 183
           DS+
Sbjct: 242 DSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9TU47|IF6_BOVIN Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2

 Score =  319 bits (817), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 163/183 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VPN TTD ELQHIRN LPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct: 62  MCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SLI
Sbjct: 182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLI 241

Query: 181 DSI 183
           DS+
Sbjct: 242 DSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Bos taurus (taxid: 9913)

>sp|Q6GR45|IF6_XENLA Eukaryotic translation initiation factor 6 OS=Xenopus laevis GN=eif6 PE=2 SV=1

 Score =  318 bits (816), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 165/183 (90%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VPN TTD ELQH+RNSLPDSV++QRVEERLSALGNVIACNDYVALVHPDL
Sbjct: 62  MCVGNRHGLMVPNNTTDQELQHMRNSLPDSVRIQRVEERLSALGNVIACNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQT++  VLVGSYCA +NQGGL+HP TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADVLKVEVFRQTIAEQVLVGSYCAFSNQGGLLHPKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           V GTVNRGSEVI AGMVVNDW AFCG DTTSTE+SVIESVFKL++A PS I TSMR SLI
Sbjct: 182 VTGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFKLSDAHPSTIATSMRDSLI 241

Query: 181 DSI 183
           DS+
Sbjct: 242 DSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|P56538|IF6_DROME Eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3

 Score =  303 bits (775), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 140/184 (76%), Positives = 167/184 (90%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGNR+GL+VPN+TTD ELQH+RNSLPD+VK+ RVEERLSALGNVIACNDYVALVHPDL
Sbjct: 62  LTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           D+ETEEI+AD L VEVFRQT++ N LVGSY  L+NQGG+VHP TS QDQDELSSLLQ+PL
Sbjct: 122 DKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEV+ AGMVVNDW +F G +TT+TEISVIESVFKLN+AQP+ +TT +RA+LI
Sbjct: 182 VAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALI 241

Query: 181 DSIA 184
           + ++
Sbjct: 242 EDMS 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q12522|IF6_YEAST Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1

 Score =  289 bits (740), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 162/184 (88%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L +AQP +I+ ++R +LI
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLI 241

Query: 181 DSIA 184
           ++ +
Sbjct: 242 ETYS 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by the GTPase RIA1/EFL1 and by SDO1. Also required for pre-rRNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1

 Score =  288 bits (738), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 131/182 (71%), Positives = 159/182 (87%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           +  GN++GL+VP+ TTD ELQH+RNSLPD V +QR++ERLSALGN IACNDYVAL H DL
Sbjct: 62  LCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           D+ETEEI+AD L VEVFRQT++ N+LVGSYCAL+N+GG+VHPHTS +D +ELS+LLQ+PL
Sbjct: 122 DKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVI AGM VNDW +FCG DTT+TE+SVI+S+FKL EAQPS+I   MR SLI
Sbjct: 182 VAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSLI 241

Query: 181 DS 182
           D+
Sbjct: 242 DT 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|O94476|IF6_SCHPO Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif6 PE=3 SV=1

 Score =  288 bits (736), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/182 (73%), Positives = 163/182 (89%), Gaps = 1/182 (0%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++ GNR GL+VP++TTD ELQH+RNSLPD VK+QRV+ERLSALGN++ACNDYVALVHPD+
Sbjct: 62  LTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDI 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           +RETEEI+AD L+VEVFRQTV+ NVL GSYCAL+NQG LVHP TS Q+QDELSSLLQ+PL
Sbjct: 122 ERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGT+NRGS+VIGAG+VVNDW AF G DTT+TE++V ES+FKL +AQPSAI  S R +L+
Sbjct: 182 VAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAI-ISNRDTLV 240

Query: 181 DS 182
           +S
Sbjct: 241 ES 242

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
82880642	245	p27BBP/eIF6-like [Spodoptera frugiperda]	1.0	0.751	0.836	2e-87
48094369	245	PREDICTED: eukaryotic translation initia	1.0	0.751	0.842	3e-87
383865070	245	PREDICTED: eukaryotic translation initia	1.0	0.751	0.836	4e-87
242019432	245	eukaryotic translation initiation factor	1.0	0.751	0.847	5e-87
225713516	246	Eukaryotic translation initiation factor	0.994	0.743	0.846	7e-87
114052170	245	eukaryotic translation initiation factor	1.0	0.751	0.826	9e-87
225713494	246	Eukaryotic translation initiation factor	0.994	0.743	0.841	2e-86
225714252	246	Eukaryotic translation initiation factor	0.994	0.743	0.841	2e-86
326931660	245	PREDICTED: eukaryotic translation initia	1.0	0.751	0.831	2e-86
71895027	245	eukaryotic translation initiation factor	1.0	0.751	0.831	2e-86

>gi|82880642|gb|ABB92838.1| p27BBP/eIF6-like [Spodoptera frugiperda]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 177/184 (96%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+VGN++GL+VP++TTDTELQHIRNSLPD+VK+QRVEERLSALGNVIACNDYVALVHPDL
Sbjct: 62  MTVGNKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DR+TEEILADTL+VEVFRQTV+ NVLVGSY AL+N+GGLVHP T+ QDQDELSSLLQ+PL
Sbjct: 122 DRDTEEILADTLDVEVFRQTVAGNVLVGSYAALSNRGGLVHPKTTIQDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGS+VI AGMVVNDW AFCG DTTSTEISVIESVFKLN+A+P+AIT++MRASLI
Sbjct: 182 VAGTVNRGSDVIAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASLI 241

Query: 181 DSIA 184
           DS++
Sbjct: 242 DSMS 245

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48094369|ref|XP_392115.1| PREDICTED: eukaryotic translation initiation factor 6 isoform 1 [Apis mellifera]

 Score =  326 bits (835), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 155/184 (84%), Positives = 172/184 (93%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           + VGN++GL+VPN TTDTELQHIRNSLPD VK+QRVEERLSALGNVIACNDYVALVHPDL
Sbjct: 62  LCVGNKNGLLVPNTTTDTELQHIRNSLPDKVKVQRVEERLSALGNVIACNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILADTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP TS QDQDELSSLLQ+PL
Sbjct: 122 DRETEEILADTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTSIQDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
            AGTVNRGS+VI AGMVVNDW +FCG DTTSTE+SVIESVFKLNEA P+AIT++MRASLI
Sbjct: 182 AAGTVNRGSDVIAAGMVVNDWVSFCGMDTTSTELSVIESVFKLNEAAPAAITSTMRASLI 241

Query: 181 DSIA 184
           +S++
Sbjct: 242 ESMS 245

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865070|ref|XP_003707998.1| PREDICTED: eukaryotic translation initiation factor 6-like [Megachile rotundata]

 Score =  325 bits (834), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 154/184 (83%), Positives = 173/184 (94%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           + VGN++GL+VPN TTDTELQHIRNSLPD+VK+QR+EERLSALGNVIACNDYVALVHPDL
Sbjct: 62  LCVGNKNGLLVPNTTTDTELQHIRNSLPDNVKVQRIEERLSALGNVIACNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILADTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP TS QDQDELSSLLQ+PL
Sbjct: 122 DRETEEILADTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTSIQDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
            AGTVNRGS+VI AGMVVNDW +FCG DTTSTE+SVIESVFKLNEA P+AIT++MRASLI
Sbjct: 182 AAGTVNRGSDVIAAGMVVNDWVSFCGMDTTSTELSVIESVFKLNEAAPAAITSTMRASLI 241

Query: 181 DSIA 184
           +S++
Sbjct: 242 ESMS 245

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019432|ref|XP_002430165.1| eukaryotic translation initiation factor, putative [Pediculus humanus corporis] gi|212515256|gb|EEB17427.1| eukaryotic translation initiation factor, putative [Pediculus humanus corporis]

 Score =  325 bits (833), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/184 (84%), Positives = 172/184 (93%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGN++GL+VPN TTDTELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPDL
Sbjct: 62  MCVGNKNGLLVPNTTTDTELQHLRNSLPDSVKIQRVEERLSALGNVITCNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEIL+D L+VEVFR TV+SNVLVGSY  L+N GGLVHP TS QDQDELSSLLQ+PL
Sbjct: 122 DRETEEILSDVLSVEVFRHTVASNVLVGSYTILSNNGGLVHPKTSIQDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGS+VI AGMVVNDW+AFCG DTTSTEISVIESVFKLNEAQPSAITT+MRASLI
Sbjct: 182 VAGTVNRGSDVIAAGMVVNDWSAFCGMDTTSTEISVIESVFKLNEAQPSAITTAMRASLI 241

Query: 181 DSIA 184
           +S++
Sbjct: 242 ESMS 245

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225713516|gb|ACO12604.1| Eukaryotic translation initiation factor 6 [Lepeophtheirus salmonis]

 Score =  325 bits (832), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 155/183 (84%), Positives = 169/183 (92%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+VGNRHGL+VPN TTD ELQHIRNSLPD+V+++RVEERLSALGNVIACNDYVALVHPDL
Sbjct: 63  MTVGNRHGLLVPNGTTDQELQHIRNSLPDTVRIRRVEERLSALGNVIACNDYVALVHPDL 122

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+ NVLVGSYCAL+NQGGLVHP TS  +QDELSSLLQIPL
Sbjct: 123 DRETEEILADVLKVEVFRQTVADNVLVGSYCALSNQGGLVHPKTSTAEQDELSSLLQIPL 182

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVIGAGMVVNDW AFCG DTTSTEISV+ES+FKLNE+Q S IT  MRASLI
Sbjct: 183 VAGTVNRGSEVIGAGMVVNDWMAFCGQDTTSTEISVVESIFKLNESQASNITQKMRASLI 242

Query: 181 DSI 183
           +S+
Sbjct: 243 ESM 245

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052170|ref|NP_001040517.1| eukaryotic translation initiation factor 6 [Bombyx mori] gi|95102688|gb|ABF51282.1| eukaryotic translation initiation factor 6 [Bombyx mori]

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 177/184 (96%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+VGN++GL+VP++TTDTELQHIRNSLP++VKLQRVEERLSALGNVIACNDYVALVHPDL
Sbjct: 62  MTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           D++TEEILADTLNVEVFRQT++ NVLVGSY AL+N+GGLVHP T+ QDQDELSSLLQ+PL
Sbjct: 122 DKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGS+V+ AGMVVNDW AFCG DTTSTEISVIESVFKLN+A+P+AIT++MRASLI
Sbjct: 182 VAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASLI 241

Query: 181 DSIA 184
           DS++
Sbjct: 242 DSMS 245

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225713494|gb|ACO12593.1| Eukaryotic translation initiation factor 6 [Lepeophtheirus salmonis]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/183 (84%), Positives = 169/183 (92%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+VGNRHGL+VPN TTD ELQHIRNSLPD+V+++RVEERLSALGNVIACNDYVALVHPDL
Sbjct: 63  MTVGNRHGLLVPNGTTDQELQHIRNSLPDTVRIRRVEERLSALGNVIACNDYVALVHPDL 122

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEV+RQTV+ NVLVGSYCAL+NQGGLVHP TS  +QDELSSLLQIPL
Sbjct: 123 DRETEEILADVLKVEVYRQTVADNVLVGSYCALSNQGGLVHPKTSTAEQDELSSLLQIPL 182

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVIGAGMVVNDW AFCG DTTSTEISV+ES+FKLNE+Q S IT  MRASLI
Sbjct: 183 VAGTVNRGSEVIGAGMVVNDWMAFCGQDTTSTEISVVESIFKLNESQASNITQKMRASLI 242

Query: 181 DSI 183
           +S+
Sbjct: 243 ESM 245

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225714252|gb|ACO12972.1| Eukaryotic translation initiation factor 6 [Lepeophtheirus salmonis]

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 154/183 (84%), Positives = 168/183 (91%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+VGNRHGL+VPN TTD ELQHIRNSLPD+V+++RVEERLSALGNVIACNDYVALVHPDL
Sbjct: 63  MTVGNRHGLLVPNGTTDQELQHIRNSLPDTVRIRRVEERLSALGNVIACNDYVALVHPDL 122

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+ NVLVGSYCAL+NQGGLVHP TS  +QDELSSLLQIPL
Sbjct: 123 DRETEEILADVLKVEVFRQTVADNVLVGSYCALSNQGGLVHPKTSTAEQDELSSLLQIPL 182

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGT NRGSEVIGAGMVVNDW AFCG DTTSTEISV+ES+FKLNE+Q S IT  MRASLI
Sbjct: 183 VAGTTNRGSEVIGAGMVVNDWMAFCGQDTTSTEISVVESIFKLNESQASNITQKMRASLI 242

Query: 181 DSI 183
           +S+
Sbjct: 243 ESM 245

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326931660|ref|XP_003211945.1| PREDICTED: eukaryotic translation initiation factor 6-like [Meleagris gallopavo]

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 167/184 (90%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VP++TTD ELQHIRNSLPDSV++QRVEERLSALGNV  CNDYVALVHPDL
Sbjct: 62  MCVGNRHGLLVPSSTTDQELQHIRNSLPDSVRIQRVEERLSALGNVTTCNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGG+VHP TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGIVHPKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVIGAGMVVNDW AFCG DTTSTE+SVIES+FKLNEAQPS I T+MR SLI
Sbjct: 182 VAGTVNRGSEVIGAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSLI 241

Query: 181 DSIA 184
           DS+A
Sbjct: 242 DSLA 245

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|71895027|ref|NP_001026019.1| eukaryotic translation initiation factor 6 [Gallus gallus] gi|53130344|emb|CAG31501.1| hypothetical protein RCJMB04_7b21 [Gallus gallus]

 Score =  323 bits (827), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 167/184 (90%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M VGNRHGL+VP++TTD ELQHIRNSLPDSV++QRVEERLSALGNV  CNDYVALVHPDL
Sbjct: 62  MCVGNRHGLLVPSSTTDQELQHIRNSLPDSVRIQRVEERLSALGNVTTCNDYVALVHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGG+VHP TS +DQDELSSLLQ+PL
Sbjct: 122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGIVHPKTSIEDQDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGSEVIGAGMVVNDW AFCG DTTSTE+SVIES+FKLNEAQPS I T+MR SLI
Sbjct: 182 VAGTVNRGSEVIGAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSLI 241

Query: 181 DSIA 184
           DS+A
Sbjct: 242 DSLA 245

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
ZFIN|ZDB-GENE-031118-110	245	eif6 "eukaryotic translation i	0.994	0.746	0.841	1.8e-78
UNIPROTKB|F1NGL6	242	EIF6 "Eukaryotic translation i	0.983	0.747	0.834	3e-78
UNIPROTKB|P56537	245	EIF6 "Eukaryotic translation i	0.994	0.746	0.830	3.8e-78
MGI|MGI:1196288	245	Eif6 "eukaryotic translation i	0.994	0.746	0.830	4.8e-78
RGD|1305373	245	Eif6 "eukaryotic translation i	0.994	0.746	0.830	4.8e-78
UNIPROTKB|Q9TU47	245	EIF6 "Eukaryotic translation i	0.994	0.746	0.830	6.2e-78
UNIPROTKB|I3L8I5	211	EIF6 "Uncharacterized protein"	0.994	0.867	0.830	6.2e-78
UNIPROTKB|E2R1S5	242	EIF6 "Eukaryotic translation i	0.983	0.747	0.828	3.1e-76
FB|FBgn0034915	245	eIF6 "eIF6" [Drosophila melano	1.0	0.751	0.760	8.4e-74
POMBASE|SPCC1919.09	244	tif6 "translation initiation f	0.983	0.741	0.730	7.7e-71

ZFIN|ZDB-GENE-031118-110 eif6 "eukaryotic translation initiation factor 6" [Danio rerio (taxid:7955)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 154/183 (84%), Positives = 166/183 (90%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VPN TTD ELQHIRN LPDSV++QRVEERLSALGNVIACNDYVALVHPDL
Sbjct:    62 MCVGNRHGLLVPNNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILADTL VEVFRQTV+  VLVGSYCA +NQGGLVH  TS +DQDELSSLLQ+PL
Sbjct:   122 DRETEEILADTLKVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SVIESVF+L+E QPSAI T+MR SLI
Sbjct:   182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSLI 241

Query:   181 DSI 183
             DS+
Sbjct:   242 DSL 244

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|F1NGL6 EIF6 "Eukaryotic translation initiation factor 6" [Gallus gallus (taxid:9031)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 151/181 (83%), Positives = 164/181 (90%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VP++TTD ELQHIRNSLPDSV++QRVEERLSALGNV  CNDYVALVHPDL
Sbjct:    62 MCVGNRHGLLVPSSTTDQELQHIRNSLPDSVRIQRVEERLSALGNVTTCNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGG+VHP TS +DQDELSSLLQ+PL
Sbjct:   122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGIVHPKTSIEDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVIGAGMVVNDW AFCG DTTSTE+SVIES+FKLNEAQPS I T+MR SLI
Sbjct:   182 VAGTVNRGSEVIGAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSLI 241

Query:   181 D 181
             D
Sbjct:   242 D 242

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

UNIPROTKB|P56537 EIF6 "Eukaryotic translation initiation factor 6" [Homo sapiens (taxid:9606)]

 Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
 Identities = 152/183 (83%), Positives = 164/183 (89%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VPN TTD ELQHIRNSLPD+V+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct:    62 MCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct:   122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SLI
Sbjct:   182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLI 241

Query:   181 DSI 183
             DS+
Sbjct:   242 DSL 244

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1196288 Eif6 "eukaryotic translation initiation factor 6" [Mus musculus (taxid:10090)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 152/183 (83%), Positives = 164/183 (89%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct:    62 MCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct:   122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SLI
Sbjct:   182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLI 241

Query:   181 DSI 183
             DS+
Sbjct:   242 DSL 244

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005638 "lamin filament" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005882 "intermediate filament" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

RGD|1305373 Eif6 "eukaryotic translation initiation factor 6" [Rattus norvegicus (taxid:10116)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 152/183 (83%), Positives = 164/183 (89%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct:    62 MCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct:   122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SLI
Sbjct:   182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLI 241

Query:   181 DSI 183
             DS+
Sbjct:   242 DSL 244

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

UNIPROTKB|Q9TU47 EIF6 "Eukaryotic translation initiation factor 6" [Bos taurus (taxid:9913)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 152/183 (83%), Positives = 163/183 (89%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VPN TTD ELQHIRN LPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct:    62 MCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct:   122 DRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SLI
Sbjct:   182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLI 241

Query:   181 DSI 183
             DS+
Sbjct:   242 DSL 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|I3L8I5 EIF6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 152/183 (83%), Positives = 163/183 (89%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VPN TTD ELQHIRN LPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct:    28 MCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 87

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct:    88 DRETEEILADVLRVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPL 147

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SLI
Sbjct:   148 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLI 207

Query:   181 DSI 183
             DS+
Sbjct:   208 DSL 210

GO:0005638 "lamin filament" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

UNIPROTKB|E2R1S5 EIF6 "Eukaryotic translation initiation factor 6" [Canis lupus familiaris (taxid:9615)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 150/181 (82%), Positives = 160/181 (88%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             M VGNRHGL+VPN TTD ELQHIRN LPDSV+++RVEERLSALGNV  CNDYVALVHPDL
Sbjct:    62 MCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             DRETEEILAD L VEVFRQTV+  VLVGSY   +NQGGLVHP TS +DQDELSSLLQ+PL
Sbjct:   122 DRETEEILADVLKVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTSIEDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SLI
Sbjct:   182 VAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLI 241

Query:   181 D 181
             D
Sbjct:   242 D 242

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

FB|FBgn0034915 eIF6 "eIF6" [Drosophila melanogaster (taxid:7227)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 140/184 (76%), Positives = 167/184 (90%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             ++VGNR+GL+VPN+TTD ELQH+RNSLPD+VK+ RVEERLSALGNVIACNDYVALVHPDL
Sbjct:    62 LTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDL 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             D+ETEEI+AD L VEVFRQT++ N LVGSY  L+NQGG+VHP TS QDQDELSSLLQ+PL
Sbjct:   122 DKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGTVNRGSEV+ AGMVVNDW +F G +TT+TEISVIESVFKLN+AQP+ +TT +RA+LI
Sbjct:   182 VAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAALI 241

Query:   181 DSIA 184
             + ++
Sbjct:   242 EDMS 245

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

POMBASE|SPCC1919.09 tif6 "translation initiation factor eIF6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 133/182 (73%), Positives = 164/182 (90%)

Query:     1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
             ++ GNR GL+VP++TTD ELQH+RNSLPD VK+QRV+ERLSALGN++ACNDYVALVHPD+
Sbjct:    62 LTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDI 121

Query:    61 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             +RETEEI+AD L+VEVFRQTV+ NVL GSYCAL+NQG LVHP TS Q+QDELSSLLQ+PL
Sbjct:   122 ERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPL 181

Query:   121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
             VAGT+NRGS+VIGAG+VVNDW AF G DTT+TE++V ES+FKL +AQPSAI ++ R +L+
Sbjct:   182 VAGTINRGSDVIGAGLVVNDWCAFAGLDTTATELAVCESIFKLQDAQPSAIISN-RDTLV 240

Query:   181 DS 182
             +S
Sbjct:   241 ES 242

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C4KIJ1	IF6_SULIK	No assigned EC number	0.3630	0.8423	0.6950	yes	N/A
B6YWY2	IF6_THEON	No assigned EC number	0.3478	0.8586	0.6929	yes	N/A
P56538	IF6_DROME	No assigned EC number	0.7608	1.0	0.7510	yes	N/A
Q60357	IF6_METJA	No assigned EC number	0.3473	0.8804	0.7105	yes	N/A
Q6ZM19	IF6_DANRE	No assigned EC number	0.8415	0.9945	0.7469	yes	N/A
Q6GR45	IF6_XENLA	No assigned EC number	0.8251	0.9945	0.7469	N/A	N/A
Q9TU47	IF6_BOVIN	No assigned EC number	0.8306	0.9945	0.7469	yes	N/A
O55135	IF6_MOUSE	No assigned EC number	0.8306	0.9945	0.7469	yes	N/A
Q46FA1	IF6_METBF	No assigned EC number	0.3333	0.8695	0.7305	yes	N/A
Q2UTN7	IF6_ASPOR	No assigned EC number	0.6864	0.9945	0.7408	yes	N/A
Q8TIN4	IF6_METAC	No assigned EC number	0.3272	0.8641	0.7293	yes	N/A
Q8PYQ3	IF6_METMA	No assigned EC number	0.3454	0.8695	0.7305	yes	N/A
Q5JGT4	IF6_PYRKO	No assigned EC number	0.3580	0.8586	0.6899	yes	N/A
A4RSQ6	IF6_OSTLU	No assigned EC number	0.6721	0.9945	0.7469	yes	N/A
C3NGA1	IF6_SULIN	No assigned EC number	0.3630	0.8423	0.6950	yes	N/A
Q9M060	IF62_ARATH	No assigned EC number	0.7197	0.9891	0.7428	yes	N/A
Q2FS97	IF6_METHJ	No assigned EC number	0.3312	0.8641	0.7194	yes	N/A
Q551M2	IF6_DICDI	No assigned EC number	0.6994	0.9945	0.75	yes	N/A
C9SV08	IF6_VERA1	No assigned EC number	0.7010	0.9945	0.7439	N/A	N/A
A2BN57	IF6_HYPBU	No assigned EC number	0.3658	0.8858	0.7244	yes	N/A
P56537	IF6_HUMAN	No assigned EC number	0.8306	0.9945	0.7469	yes	N/A
Q8SS47	IF6_ENCCU	No assigned EC number	0.5166	0.9619	0.7344	yes	N/A
C3N7D3	IF6_SULIY	No assigned EC number	0.3630	0.8423	0.6950	yes	N/A
Q59L13	IF6_CANAL	No assigned EC number	0.7173	1.0	0.7510	N/A	N/A
Q5ASA6	IF6_EMENI	No assigned EC number	0.7251	0.9293	0.6923	yes	N/A
O81920	IF6_BETVU	No assigned EC number	0.75	0.6956	0.6632	N/A	N/A
O62106	IF6_CAEEL	No assigned EC number	0.6358	0.9945	0.7439	yes	N/A
C5A7H2	IF6_THEGJ	No assigned EC number	0.3670	0.8423	0.6798	yes	N/A
C3MXG7	IF6_SULIM	No assigned EC number	0.3630	0.8423	0.6950	yes	N/A
A7I9I6	IF6_METB6	No assigned EC number	0.3641	0.8586	0.7181	yes	N/A
Q2NGQ7	IF6_METST	No assigned EC number	0.3554	0.8858	0.7276	yes	N/A
Q8U3S8	IF6_PYRFU	No assigned EC number	0.3540	0.8586	0.6960	yes	N/A
Q3KRD8	IF6_RAT	No assigned EC number	0.8306	0.9945	0.7469	yes	N/A
C3MR78	IF6_SULIL	No assigned EC number	0.3630	0.8423	0.6950	yes	N/A
Q12522	IF6_YEAST	No assigned EC number	0.7228	1.0	0.7510	yes	N/A
Q9YD27	IF6_AERPE	No assigned EC number	0.3924	0.8478	0.6695	yes	N/A
Q980G0	IF6_SULSO	No assigned EC number	0.3630	0.8423	0.6950	yes	N/A
O94476	IF6_SCHPO	No assigned EC number	0.7362	0.9836	0.7418	yes	N/A
Q98RM8	IF6_GUITH	No assigned EC number	0.3875	0.8695	0.7017	yes	N/A
C3MZB3	IF6_SULIA	No assigned EC number	0.3630	0.8423	0.6950	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
PTZ00136	247	PTZ00136, PTZ00136, eukaryotic translation initiat	1e-116
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	2e-91
smart00654	200	smart00654, eIF6, translation initiation factor 6	2e-81
pfam01912	197	pfam01912, eIF-6, eIF-6 family	7e-77
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	6e-73
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	6e-62
PRK04046	222	PRK04046, PRK04046, translation initiation factor	4e-49
PRK04046	222	PRK04046, PRK04046, translation initiation factor	2e-11
pfam01912	197	pfam01912, eIF-6, eIF-6 family	1e-08
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	1e-06
smart00654	200	smart00654, eIF6, translation initiation factor 6	7e-05
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	4e-04
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	0.003

>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like protein; Provisional

 Score =  330 bits (848), Expect = e-116
 Identities = 136/186 (73%), Positives = 157/186 (84%), Gaps = 2/186 (1%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGNR GL+VP+  TD ELQH+RNSLPDSVK+QRVEERLSALGN IACNDYVAL+HPDL
Sbjct: 62  LTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDL 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEEI+ D L VEVFR T++ NVLVG+YC  TNQGGLVHP TS Q+ DELSSLLQ+PL
Sbjct: 122 DRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQ--PSAITTSMRAS 178
           VAGTVNRGS+VIGAG+VVNDWAAFCG DTT+TEISVIE +FKL  A          +R+S
Sbjct: 182 VAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRSS 241

Query: 179 LIDSIA 184
           LID++A
Sbjct: 242 LIDTLA 247

Length = 247

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score =  265 bits (679), Expect = 2e-91
 Identities = 95/162 (58%), Positives = 119/162 (73%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGN +GL++P+ TTD ELQHIRNSLPD V + RV+E LSALGNVI CND+ ALVHPDL
Sbjct: 59  LTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDL 118

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
            +E EEI+ D L VEVFR T++    VGS   LTN+GGLVHP TS ++ +ELS L ++P+
Sbjct: 119 SKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPV 178

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK 162
           VAGTVN GS+ +GAG+V N   A  G DTT  E+S IE    
Sbjct: 179 VAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score =  239 bits (613), Expect = 2e-81
 Identities = 96/143 (67%), Positives = 119/143 (83%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGN +GL+VPN TTD ELQH+RNSLPDSV++QRVEERL+ALGN+I CND+ AL  PDL
Sbjct: 58  LTVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDL 117

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
            +ETEEI++D L VEVFR T++ N+ VGSYC +TN+GGLVHP TS ++  ELS LL +PL
Sbjct: 118 SKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPL 177

Query: 121 VAGTVNRGSEVIGAGMVVNDWAA 143
           VAGTVN GSEV+GAG+V ND  A
Sbjct: 178 VAGTVNFGSEVVGAGLVANDNGA 200

Length = 200

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score =  227 bits (582), Expect = 7e-77
 Identities = 82/143 (57%), Positives = 107/143 (74%), Gaps = 2/143 (1%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGN +GL+VP+  TD EL H++ SL   V ++R+EE+L+ALGNVI  ND  ALVHPDL
Sbjct: 57  LTVGNSNGLLVPSTATDEELDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDL 114

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
            RETEEI+AD L VEVFR T++ N  VGS    TN+GGLVHP  + ++ +ELS LL +P+
Sbjct: 115 SRETEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPV 174

Query: 121 VAGTVNRGSEVIGAGMVVNDWAA 143
            AGTVNRGS ++GAG+V ND  A
Sbjct: 175 DAGTVNRGSPLVGAGLVANDKGA 197

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score =  218 bits (558), Expect = 6e-73
 Identities = 73/163 (44%), Positives = 100/163 (61%), Gaps = 2/163 (1%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++ GN +GL+VP    D EL+ ++N     V++  +  +L+ALGN+I  ND  ALVHPDL
Sbjct: 61  LTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDL 118

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             E E+ + D L VEV R T++    VGS   LTN+GGLVHP TS ++ +ELS L  +P+
Sbjct: 119 SDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPV 178

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
             GTVN GS  +GAG+V N   A  G DTT  E++ IE     
Sbjct: 179 DVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221

Length = 222

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score =  190 bits (485), Expect = 6e-62
 Identities = 95/164 (57%), Positives = 120/164 (73%), Gaps = 5/164 (3%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDS-VKLQRVEERLSALGNVIACNDYVALVHPD 59
           ++VGN  GL+V     D  L H  +SLPDS VK+QR+EERL+ALGN+I CNDY AL  P+
Sbjct: 57  LTVGNSRGLLVS----DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPE 112

Query: 60  LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 119
           LDR+TEE+++D L VEVFR T++  + VGSY  +TN+GGLVHP TS Q+Q+ELSSLL + 
Sbjct: 113 LDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVE 172

Query: 120 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           LVAGTVNRG+ V+GA MV N   A  G DTT  E+S+IE    L
Sbjct: 173 LVAGTVNRGTTVVGACMVANSKGAVVGLDTTGPELSIIEEALGL 216

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score =  158 bits (401), Expect = 4e-49
 Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 2/165 (1%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++ GN +G++VP+   D EL+ ++ +L   + ++ +  +L+ALGN+I  ND  ALVHP+L
Sbjct: 60  LAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPEL 117

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             E  +++ DTL VEV R T++    VGS   +TN+GGLVHP  + ++   L  L ++ +
Sbjct: 118 SDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVEV 177

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 165
             GTVN GS ++G+G+V N   A  G DTT  E+  IE      E
Sbjct: 178 DIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222

Length = 222

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score = 59.8 bits (146), Expect = 2e-11
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 47  IACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSP 106
               D  ALV PDLD +T E + +TL VEV   T++ + LVGS  A  + G LV      
Sbjct: 17  ARATDDYALVPPDLDEKTVEKIEETLGVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLD 76

Query: 107 QDQDELSSLLQIP--LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK 162
           ++ + L   L +   ++   +     +I    + ND  A    + +     VIE    
Sbjct: 77  EELELLKEALDLNVEVLPSKLTALGNLI----LANDKGALVHPELSDEARKVIEDTLG 130

Length = 222

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 43  LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
           +G      +  ALV P L  E   ++ + L VEV   +++ + LVGS     + G LV  
Sbjct: 10  IGVFARATNDYALVPPGLSEEFYSVIEEELGVEVVETSIAGSRLVGSLTVGNSNGLLVPS 69

Query: 103 HTSPQDQDELSSLLQIPLV 121
             + ++ D L   L + + 
Sbjct: 70  TATDEELDHLKESLDVNVE 88

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 2/123 (1%)

Query: 38  ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQG 97
           E    +G      +  ALV P LD +  +++ + L V V   T++ + LVG+  A  + G
Sbjct: 9   EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNG 68

Query: 98  GLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVI 157
            LV      ++   L +   + +    +      +G  ++ ND  A    D +      I
Sbjct: 69  LLVPYGVRDEELRRLKNA--LGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEI 126

Query: 158 ESV 160
           E V
Sbjct: 127 EDV 129

Length = 222

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 25/118 (21%), Positives = 44/118 (37%)

Query: 43  LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
           +G  I   +   LV    D     ++ + L V V   ++  + L+G      + G LV  
Sbjct: 11  IGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPN 70

Query: 103 HTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160
            T+ Q+   L + L   +    V      +G  ++ ND  A    D +     +I  V
Sbjct: 71  TTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDV 128

Length = 200

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 43  LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
           +G      +   LV P  D        + L V V R T+  + LVGS     N  GL+ P
Sbjct: 12  IGVFAKATNSYCLVPPGGDENFVSKFEEELGVPVVRTTIGGSRLVGSLTV-GNSNGLLLP 70

Query: 103 HT 104
           HT
Sbjct: 71  HT 72

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 78  RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMV 137
           R +   +  +G Y   T    LV P    +  D +  +L +P+V  T+  GS ++GA   
Sbjct: 5   RLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIA-GSRLVGALTA 63

Query: 138 VNDWAAFCGFDTTSTEISVIES 159
            N       +     E+  +++
Sbjct: 64  GNSNGLLVPYGVRDEELRRLKN 85

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
KOG3185|consensus	245		100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
KOG3185|consensus	245		99.87

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=1.5e-59  Score=402.20  Aligned_cols=184  Identities=73%  Similarity=1.149  Sum_probs=180.5

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |++||+||+|||++++|+|+++||++||++++|.++++|++++|||++|||+||++||+++++..+.|+|+||||+++++
T Consensus        62 l~~gN~nGllvp~~~~d~El~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~t  141 (247)
T PTZ00136         62 LTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTT  141 (247)
T ss_pred             EEeecCCeEEcCCcCCHHHHHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |+|+++||+++++||+|+||||.++++|++.|+++|||++.+||+|+|.++||++++|||+|++|||+||++|+++||++
T Consensus       142 Iag~~lVGs~~v~Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~  221 (247)
T PTZ00136        142 IAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERI  221 (247)
T ss_pred             ecCCceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC--CCCchhHHHHHHHhhhhhC
Q psy3570         161 FKLNE--AQPSAITTSMRASLIDSIA  184 (184)
Q Consensus       161 Lgv~~--~~~~~~~~~~~~~~~~~~~  184 (184)
                      ||++.  +++..+...||++|||+.+
T Consensus       222 l~v~~~~~~~~~~~~~~~~~~~~~~~  247 (247)
T PTZ00136        222 FKLRRAGGKEGNDLQKLRSSLIDTLA  247 (247)
T ss_pred             hCCCcccCCchhhHHHHHHHHHHhhC
Confidence            99999  8888888999999999864

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-53  Score=355.34  Aligned_cols=161  Identities=45%  Similarity=0.685  Sum_probs=158.2

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |++|||||+|||+.++|+|+++||+  +.+++|.++++|+||+||.|+|||+.|++||+++++..|.|+|+||||+++++
T Consensus        61 l~~gNsnG~lvP~~~~d~El~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgt  138 (222)
T COG1976          61 LTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGT  138 (222)
T ss_pred             EEeecCCceEcCCcccHHHHHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEE
Confidence            6899999999999999999999998  56899999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |||.++|||+++.||+|+||||.++++|+|+|+++|+|++..||+|+|.++||+|+||||||++||.+||+||+.|||++
T Consensus       139 Iag~~tVGsa~v~tnkG~LvhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~a  218 (222)
T COG1976         139 IAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDA  218 (222)
T ss_pred             ecCccceeeEEEEecCcceeCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC
Q psy3570         161 FKL  163 (184)
Q Consensus       161 Lgv  163 (184)
                      ||.
T Consensus       219 Lg~  221 (222)
T COG1976         219 LGF  221 (222)
T ss_pred             hcc
Confidence            984

>KOG3185|consensus

Probab=100.00  E-value=2.5e-48  Score=322.91  Aligned_cols=183  Identities=80%  Similarity=1.233  Sum_probs=181.2

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      ||+||.||+|||+.+||+|+++||++||+.+.+.++++|.+|+||.|+|||+.|++||++++++.+.|+|+|+|||+|.+
T Consensus        62 l~~GNr~GLLvp~~tTDqElqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqt  141 (245)
T KOG3185|consen   62 LCVGNRHGLLVPHTTTDQELQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQT  141 (245)
T ss_pred             hhccCcCceecCCcCcHHHHHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeec
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |++-++||++|+.+|+|++|||.++-++.++|+.+|.||+..||+|+|...+|+|+++||+-+++|-+||..|+..||.+
T Consensus       142 ia~n~LvGsyc~lsnqG~lVhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesi  221 (245)
T KOG3185|consen  142 IAQNSLVGSYCALSNQGGLVHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESI  221 (245)
T ss_pred             ccCCceeeeeEEEcCCCceecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCchhHHHHHHHhhhhh
Q psy3570         161 FKLNEAQPSAITTSMRASLIDSI  183 (184)
Q Consensus       161 Lgv~~~~~~~~~~~~~~~~~~~~  183 (184)
                      |++.+|||+++..+||++|||+.
T Consensus       222 FkL~~aqp~~i~~~~R~~lid~~  244 (245)
T KOG3185|consen  222 FKLNEAQPSSISSELRDTLIDSY  244 (245)
T ss_pred             HhhcccCchhHHHHHHHHHHHhc
Confidence            99999999999999999999986

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=2.9e-49  Score=329.71  Aligned_cols=142  Identities=51%  Similarity=0.820  Sum_probs=121.9

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |++||+||+|||++++|+|+++||+++| +++|+++++|+||+||+|+|||++|++||+++++..+.|+|+|||||++++
T Consensus        58 l~~GNsnGllvp~~~~d~El~~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~t  136 (199)
T PF01912_consen   58 LCVGNSNGLLVPSIITDEELEHLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGT  136 (199)
T ss_dssp             H-EEESSEEEEETT--HHHHHHHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--
T ss_pred             EEEEcCCEEEECCcCCHHHHHHHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEE
Confidence            6899999999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceE
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAA  143 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga  143 (184)
                      |+|.++|||++++||+|+||||+++++|+++|+++|+|++..||+|+|.++||+|++|||+|+
T Consensus       137 ia~~~~VGs~~v~tn~G~LvhP~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~  199 (199)
T PF01912_consen  137 IAGIKTVGSAAVATNKGGLVHPDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA  199 (199)
T ss_dssp             BTTBS-CCCSEEE-SSEEEE-TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred             ecCcccceeeEEEeCcEEEECCCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence            999999999999999999999999999999999999999999999999999999999999997

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=2.6e-46  Score=316.43  Aligned_cols=163  Identities=39%  Similarity=0.639  Sum_probs=159.5

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |+++|+||+|+|+.++++|++.|++.|  +++|.+++.+++++||++++||++|++||+++++.++.|+|+||||+.+.+
T Consensus        60 ~i~~N~~g~lvp~~~~~~e~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~t  137 (222)
T PRK04046         60 LAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGT  137 (222)
T ss_pred             EEEEcCceEEeCCCCCHHHHHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEe
Confidence            579999999999999999999999997  799999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |++.++||+++++||+|+||||+++++|++.|+++|+|++.+||+|+|.++||++++|||+|++|||+||++|+++|+++
T Consensus       138 i~~~~~VGs~ivaNd~G~lv~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~  217 (222)
T PRK04046        138 IAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDA  217 (222)
T ss_pred             cCCccceeeEEEEeCCEEEECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC
Q psy3570         161 FKLNE  165 (184)
Q Consensus       161 Lgv~~  165 (184)
                      ||+.+
T Consensus       218 l~~~~  222 (222)
T PRK04046        218 LGFIE  222 (222)
T ss_pred             hccCC
Confidence            99753

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=7.3e-45  Score=307.44  Aligned_cols=160  Identities=56%  Similarity=0.844  Sum_probs=152.4

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccc--cceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEE
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLS--ALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFR   78 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~--~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~   78 (184)
                      |+++|++|+|||+.++++|++.|+++|+.  +|.+++.+.+  ++||++++||++|++||.++++.++.|++.|+|+|++
T Consensus        59 ~~~~n~~~~lvp~~~~~~e~~~l~~~L~~--~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~  136 (220)
T cd00527          59 LTVGNSNGLLLPHTTTDQELQHIRNSLPD--EVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFR  136 (220)
T ss_pred             EEEEeCCEEEECCCCCHHHHHHHHHhcCC--CeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEE
Confidence            57899999999999999999999998754  4555555555  9999999999999999999999999999999999999


Q ss_pred             EeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHH
Q psy3570          79 QTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIE  158 (184)
Q Consensus        79 ~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Ie  158 (184)
                      .+|++.+.+|+++++||+|+|+||+++++|++.|+++|||++.+||+|+|.++|||+++|||+|++|||+||++|+++|+
T Consensus       137 ~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie  216 (220)
T cd00527         137 GTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIE  216 (220)
T ss_pred             EEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhC
Q psy3570         159 SVFK  162 (184)
Q Consensus       159 dvLg  162 (184)
                      |+||
T Consensus       217 ~~l~  220 (220)
T cd00527         217 DALG  220 (220)
T ss_pred             HHhC
Confidence            9996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=1.8e-43  Score=298.11  Aligned_cols=159  Identities=58%  Similarity=0.920  Sum_probs=155.1

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |+++|++|++||+.+.+++++.|++.    ++|.+++++.+++||++++||++|++||.++++.++.|++.||++|.+.+
T Consensus        57 ~~~~n~~~~lvp~~~~~~~~~~l~e~----l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~  132 (215)
T TIGR00323        57 MTAGNSRGLLVPDQVLDHELDSLPDS----LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGT  132 (215)
T ss_pred             EEEEcCCEEEECCCcCHHHHHhhHhh----cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEe
Confidence            57899999999999999999999974    78899999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |++..++|+++++||+|+||||+++++|++.|+|+|||++.+||+|+|.++|||+++|||+|++|||+||++|+++|+|+
T Consensus       133 i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~  212 (215)
T TIGR00323       133 IAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEA  212 (215)
T ss_pred             cccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC
Q psy3570         161 FKL  163 (184)
Q Consensus       161 Lgv  163 (184)
                      ||+
T Consensus       213 l~~  215 (215)
T TIGR00323       213 LGL  215 (215)
T ss_pred             hCc
Confidence            985

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=2.1e-42  Score=288.76  Aligned_cols=161  Identities=19%  Similarity=0.244  Sum_probs=155.4

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEec-cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEE
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVF   77 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~-~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi   77 (184)
                      |+++|++|+|||+.++++|++.|++.|  +++|.++. .+++++||++++||+++++||.++++.++.|++.|+  ++|.
T Consensus        14 ~~~~n~~~~lvp~~~~~~~~~~i~e~L--~v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~~~L~d~v~V~   91 (200)
T smart00654       14 YIKLTNSYCLVPVGGDENFYSVIEEVL--GVPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQ   91 (200)
T ss_pred             EEEEeCCEEEECCCCCHHHHHHHHHhc--CCcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHHHhcCCCeeEE
Confidence            578999999999999999999999987  48888876 999999999999999999999999999999999997  9999


Q ss_pred             EEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHH
Q psy3570          78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVI  157 (184)
Q Consensus        78 ~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~I  157 (184)
                      +.+.. .+.+|+++++||+|+|+||+++++|++.|+++|||++.+||+ +|.++|||+++|||+|++|||+||++|+++|
T Consensus        92 ~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv~~~tt~~El~~i  169 (200)
T smart00654       92 RVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLVHPDTSEEELKEL  169 (200)
T ss_pred             EEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEECCCCCHHHHHHH
Confidence            98887 999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             HHHhCCCC
Q psy3570         158 ESVFKLNE  165 (184)
Q Consensus       158 edvLgv~~  165 (184)
                      +++||++.
T Consensus       170 e~~l~v~~  177 (200)
T smart00654      170 SELLGVPL  177 (200)
T ss_pred             HHHhCCCc
Confidence            99999986

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=3e-42  Score=287.85  Aligned_cols=143  Identities=67%  Similarity=1.045  Sum_probs=140.6

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |+++|+||+|||+.++++|++.|+++|+++++|.+++.+++++||+++|||++|++||+++++.++.|+|+||||+.++|
T Consensus        58 li~~N~~g~lv~~~~~~~el~~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gT  137 (200)
T smart00654       58 LTVGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGT  137 (200)
T ss_pred             EEEEcCCEEEeCCCCCHHHHHHHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEE
Confidence            57899999999999999999999999987899999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceE
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAA  143 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~Ga  143 (184)
                      |+|.++|||.+++||+|+||||+++++|+++|+++|++++..||+|+|.++||+|++|||+|+
T Consensus       138 i~G~~~VGs~~VannkG~lv~~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~  200 (200)
T smart00654      138 IAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA  200 (200)
T ss_pred             ecCcccceEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence            999999999999999999999999999999999999999999999999999999999999996

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=6.8e-41  Score=283.41  Aligned_cols=161  Identities=22%  Similarity=0.336  Sum_probs=155.0

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceE-EEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEE
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKL-QRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQ   79 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v-~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~   79 (184)
                      |+++|++++|+|+.++++|++.|++.|  ++++ +.--.+.+++|+|+++||+++++||.++++..+.|++.|||++.++
T Consensus        16 ~~~~n~~~~lvp~~~~~~~~~~i~~~L--~v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L~v~V~~~   93 (222)
T PRK04046         16 YARATDDYALVPPDLDEKTVEKIEETL--GVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEALDLNVEVL   93 (222)
T ss_pred             EEEEcCCEEEECCCCCHHHHHHHHHhc--CceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhcCceEEEE
Confidence            478999999999999999999999997  5666 4457799999999999999999999999999999999999999999


Q ss_pred             eecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHH
Q psy3570          80 TVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIES  159 (184)
Q Consensus        80 tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Ied  159 (184)
                      ++ +++++|+++++||+|+|+||.++++|++.|++.|||++.++++ +|.+++||+++|||+||+|||++|++|+++|+|
T Consensus        94 ~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv~p~~t~~ei~~i~~  171 (222)
T PRK04046         94 PS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLVHPDATDEELKFLED  171 (222)
T ss_pred             ec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEECCCCCHHHHHHHHH
Confidence            99 9999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             HhCCCC
Q psy3570         160 VFKLNE  165 (184)
Q Consensus       160 vLgv~~  165 (184)
                      +|||+.
T Consensus       172 ~l~v~~  177 (222)
T PRK04046        172 LFKVEV  177 (222)
T ss_pred             HhCCce
Confidence            999995

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=2.3e-33  Score=237.44  Aligned_cols=160  Identities=18%  Similarity=0.307  Sum_probs=149.7

Q ss_pred             ccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEec-cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEE
Q psy3570           2 SVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFR   78 (184)
Q Consensus         2 ~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~-~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~   78 (184)
                      +..|++=.++|+.+.++..+.|++.|  ++.+.++. ...+.+|.|+++||+|+++|+..+++..+.|++.|+  |++++
T Consensus        16 ~~~~~~~~lvp~~~~~~~~~~i~e~L--~v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~   93 (220)
T cd00527          16 AKATNSYCLVPPGGDENFVSKFEEEL--GVPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLR   93 (220)
T ss_pred             EEEeccEEEEcCCCCHHHHHHHHHHh--CCcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEE
Confidence            45678889999999999999999986  35554443 588999999999999999999999999999999999  99999


Q ss_pred             EeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHH
Q psy3570          79 QTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIE  158 (184)
Q Consensus        79 ~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Ie  158 (184)
                      +++.+| ++|.++++||+|+||||.++++|++.|++.|++++.++++ ++.+++||.++|||+||||||+++++|++.|+
T Consensus        94 ~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i-~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~  171 (220)
T cd00527          94 VKENLS-ALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTI-AGIKTVGSAGVLTNKGGLVHPKTSDEELEELS  171 (220)
T ss_pred             ccccce-eeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEc-cCcccceeEEEEeccEEEECCCCCHHHHHHHH
Confidence            999999 9999999999999999999999999999999999999998 77999999999999999999999999999999


Q ss_pred             HHhCCCC
Q psy3570         159 SVFKLNE  165 (184)
Q Consensus       159 dvLgv~~  165 (184)
                      |+|||+.
T Consensus       172 d~L~V~v  178 (220)
T cd00527         172 ELFKVPV  178 (220)
T ss_pred             HHhCCcE
Confidence            9999996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=1.1e-34  Score=242.31  Aligned_cols=126  Identities=22%  Similarity=0.335  Sum_probs=109.8

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhc-
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLL-  116 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l-  116 (184)
                      ...+.+|+|+++||+||++||+++++..+.|++.|+||+++|+|+||+++|+|++||+||+|||+.++|+|++.|++.+ 
T Consensus         6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~   85 (199)
T PF01912_consen    6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP   85 (199)
T ss_dssp             TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred             eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570         117 QIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  165 (184)
Q Consensus       117 ~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~  165 (184)
                      ++++.  +++.+.+++||.|+|||+||+|||++++++.+.|+|+|||++
T Consensus        86 ~v~V~--~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV  132 (199)
T PF01912_consen   86 DVNVE--VLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEV  132 (199)
T ss_dssp             TSEEE--EE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEE
T ss_pred             CceEE--EeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceE
Confidence            66655  999999999999999999999999999999999999999986

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=1.2e-32  Score=232.32  Aligned_cols=158  Identities=18%  Similarity=0.252  Sum_probs=147.9

Q ss_pred             ccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEec-cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           2 SVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         2 ~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~-~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      +..|++=.++|+.+.++..+.+++.|  ++.+.++. .+.+.+|.|+++||+|+++|+..+++..+.+++.|+|++++++
T Consensus        14 ~~~~~~~~~vp~~~~~~~~~~~~e~l--~v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~V~~i~t~   91 (215)
T TIGR00323        14 AKVTEEYALVPVNGSENFYSAFEEEL--EVPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLKVQRIEER   91 (215)
T ss_pred             EEEeCcEEEEcCCCCHHHHHHHHHHh--CCcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcCeEEEeeE
Confidence            45577778999999999999999987  45555553 4789999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |   +++|+++++||+|+|+||.++++|++.|++.|++++.+.++ .+.+++|+.++|||+||||||+++++|++.|+|+
T Consensus        92 i---~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i-~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~  167 (215)
T TIGR00323        92 L---TALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTI-AGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSL  167 (215)
T ss_pred             E---EeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEec-ccccccceEEEEeCcEEEECCCCCHHHHHHHHHH
Confidence            9   99999999999999999999999999999999999998888 9999999999999999999999999999999999


Q ss_pred             hCCCC
Q psy3570         161 FKLNE  165 (184)
Q Consensus       161 Lgv~~  165 (184)
                      |||+.
T Consensus       168 LgV~v  172 (215)
T TIGR00323       168 LGVEL  172 (215)
T ss_pred             hCCcE
Confidence            99996

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.7e-33  Score=232.32  Aligned_cols=127  Identities=26%  Similarity=0.435  Sum_probs=121.7

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEe-----------------
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLV-----------------  100 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV-----------------  100 (184)
                      ++.+.||.|+.++|+||++||+.+++.++.|+++|+||+++++|+||+++|+|+++|+||+||                 
T Consensus         9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~   88 (222)
T COG1976           9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG   88 (222)
T ss_pred             cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence            578999999999999999999999999999999999999999999999999999996666665                 


Q ss_pred             --------------------------CCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHH
Q psy3570         101 --------------------------HPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEI  154 (184)
Q Consensus       101 --------------------------~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El  154 (184)
                                                ||+++++..|.|+|+|||++.+||+ +|.+.|||..++|+||+||||++|++|+
T Consensus        89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El  167 (222)
T COG1976          89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL  167 (222)
T ss_pred             ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence                                      9999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q psy3570         155 SVIESVFKLNE  165 (184)
Q Consensus       155 ~~IedvLgv~~  165 (184)
                      ++++++|||+.
T Consensus       168 e~Lse~f~V~v  178 (222)
T COG1976         168 EELSELFGVPV  178 (222)
T ss_pred             HHHHHHhCeeE
Confidence            99999999986

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=5.2e-32  Score=232.34  Aligned_cols=127  Identities=17%  Similarity=0.278  Sum_probs=119.4

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEEEeecCceeeeeEEEEcCCeEEe---------------
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLV---------------  100 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~~tIags~lVGsl~v~Nn~G~LV---------------  100 (184)
                      ++.+.+|+|+++||+||++||+.+++..+.|++.|+  ||+++|+|+||+++|+|++||+||+||               
T Consensus         8 ~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~   87 (247)
T PTZ00136          8 ENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNS   87 (247)
T ss_pred             cCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHh
Confidence            477999999999999999999999999999999999  999999999999999999998888888               


Q ss_pred             ------------------------------CCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCC
Q psy3570         101 ------------------------------HPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTT  150 (184)
Q Consensus       101 ------------------------------~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt  150 (184)
                                                    ||+++++..+.|++.|+|++.++|+ +|.+.||+.+++||+||||||+++
T Consensus        88 l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s  166 (247)
T PTZ00136         88 LPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTI-AGNVLVGTYCVFTNQGGLVHPKTS  166 (247)
T ss_pred             CcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEe-cCCceEEEEEEEeCcEEEECCCCC
Confidence                                          7777777777777778888889998 999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q psy3570         151 STEISVIESVFKLNE  165 (184)
Q Consensus       151 ~~El~~IedvLgv~~  165 (184)
                      ++|++.|+|+|||+.
T Consensus       167 ~ee~~~i~d~L~V~v  181 (247)
T PTZ00136        167 VQEMDELSSLLQVPL  181 (247)
T ss_pred             HHHHHHHHHHhCCcE
Confidence            999999999999996

>KOG3185|consensus

Probab=99.87  E-value=5.2e-22  Score=165.72  Aligned_cols=128  Identities=19%  Similarity=0.265  Sum_probs=125.1

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL  115 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~  115 (184)
                      ++.+-+|.|...++.||+|..+-++.....++..|+  +|++.|+|+|++++|++++||.+|+|||..++|+|++.|++.
T Consensus         8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS   87 (245)
T KOG3185|consen    8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS   87 (245)
T ss_pred             cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence            466899999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570         116 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  165 (184)
Q Consensus       116 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~  165 (184)
                      |+-++...++....+++|+.+.+||+-|+|||+++.+.-+.|.|+|+|++
T Consensus        88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV  137 (245)
T KOG3185|consen   88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV  137 (245)
T ss_pred             CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence            99999999999999999999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
3j2i_B	245	Structure Of Late Pre-60s Ribosomal Subunits With N		5e-79
1g62_A	224	Crystal Structure Of S.Cerevisiae Eif6 Length = 224		4e-74
4a18_J	248	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-70
1g61_A	228	Crystal Structure Of M.Jannaschii Eif6 Length = 228		3e-22
4adx_I	222	The Cryo-Em Structure Of The Archaeal 50s Ribosomal		1e-17

>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 245

Iteration: 1
 Score =  289 bits (740), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 162/184 (88%)
Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121
Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
           VAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L +AQP +I+ ++R +LI
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTLI 241
Query: 181 DSIA 184
           ++ +
Sbjct: 242 ETYS 245

>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 Length = 224

Iteration: 1
 Score =  273 bits (698), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 126/163 (77%), Positives = 146/163 (89%)
Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121
Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           VAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 248

Iteration: 1
 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 116/180 (64%), Positives = 152/180 (84%)
Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++ GN++GL+VPN   D EL++IRNSLPD+V+++R+EE+LSALGN +  NDYVAL+HPDL
Sbjct: 65  VTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDL 124
Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRE+EEI+ADTL VEVFR T+++NVLVG+YC + N+GGLVHP  S ++ DEL++LLQIPL
Sbjct: 125 DRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPL 184
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
            AGT+NRGS+VIGAG+VVNDWAAFCG DTTSTEISV+E++FKLNE +   +   MR   +
Sbjct: 185 CAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDFV 244

>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 Length = 228

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 5/167 (2%)
Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDS---VKLQRVEERLSALGNVIACNDYVALVH 57
           +SV N++GL++P    D EL  I+N L ++   + ++ ++ + +ALGN+I  ND  AL+ 
Sbjct: 62  LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALIS 121
Query: 58  PDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117
           P+L ++ ++ + D+LNVEV   T++    VGS   +TN+G L HP     + + L SL +
Sbjct: 122 PEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK 180
Query: 118 IPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           +  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 181 VEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6 Length = 222

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGN +G +V N   D E+  +  +    V+  R+ ER +A+GN++  ND  A+  P L
Sbjct: 60  LAVGNSNGFVVSNQAMDREIDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLL 116
Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             +  +++ D L V+V   T++   +VGS  A TN+G L++P  S ++   +   L +  
Sbjct: 117 SDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEA 176
Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEA 166
             GTVN G  +IGA  V N      G +TT  E++ IE      E 
Sbjct: 177 DVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	2e-81
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	6e-10
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	4e-74
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	7e-10
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	3e-71
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	2e-12
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	2e-69
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	3e-11

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score =  241 bits (615), Expect = 2e-81
 Identities = 116/183 (63%), Positives = 154/183 (84%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++ GN++GL+VPN   D EL++IRNSLPD+V+++R+EE+LSALGN +  NDYVAL+HPDL
Sbjct: 65  VTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDL 124

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRE+EEI+ADTL VEVFR T+++NVLVG+YC + N+GGLVHP  S ++ DEL++LLQIPL
Sbjct: 125 DRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPL 184

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLI 180
            AGT+NRGS+VIGAG+VVNDWAAFCG DTTSTEISV+E++FKLNE +   +   MR   +
Sbjct: 185 CAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDFV 244

Query: 181 DSI 183
            ++
Sbjct: 245 MNL 247

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score = 55.4 bits (133), Expect = 6e-10
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 2/124 (1%)

Query: 41  SALGNVIACNDYVALVHPDLDRETEEILADTL--NVEVFRQTVSSNVLVGSYCALTNQGG 98
           + +G          LV          +    L  ++ V   ++    +VG        G 
Sbjct: 14  NDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGL 73

Query: 99  LVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIE 158
           LV    +  +   + + L   +    +      +G  +V ND+ A    D       +I 
Sbjct: 74  LVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIA 133

Query: 159 SVFK 162
               
Sbjct: 134 DTLG 137

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score =  221 bits (564), Expect = 4e-74
 Identities = 126/163 (77%), Positives = 146/163 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           VAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score = 55.4 bits (133), Expect = 7e-10
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 2/126 (1%)

Query: 41  SALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGG 98
           + +G      +   LV               L   + +   T++   ++G   A   +G 
Sbjct: 11  NEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGL 70

Query: 99  LVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIE 158
           LV   T+ Q+   L + L   +    V      +G  +  ND+ A    D       +I 
Sbjct: 71  LVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELIS 130

Query: 159 SVFKLN 164
            V  + 
Sbjct: 131 DVLGVE 136

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score =  214 bits (545), Expect = 3e-71
 Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 3/166 (1%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           ++VGN +G +V N   D E+  +  +  +     R+ ER +A+GN++  ND  A+  P L
Sbjct: 60  LAVGNSNGFVVSNQAMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPLL 116

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
             +  +++ D L V+V   T++   +VGS  A TN+G L++P  S ++   +   L +  
Sbjct: 117 SDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEA 176

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEA 166
             GTVN G  +IGA  V N      G +TT  E++ IE      E 
Sbjct: 177 DVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score = 61.9 bits (150), Expect = 2e-12
 Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 38  ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQG 97
                LG  I+  D VAL+  +   + E +L + L VEV + ++S + L G+     + G
Sbjct: 8   SGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALEVEVLKVSISGSSLNGALAVGNSNG 67

Query: 98  GLVHPHTSPQDQDEL-SSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISV 156
            +V      ++ D L ++ ++   +          +G  ++ ND  A      +   + V
Sbjct: 68  FVVSNQAMDREIDALAAAGVEAVRIPERFT----AVGNLVLANDNGAVASPLLSDDALQV 123

Query: 157 IESVFKLN 164
           I  V +++
Sbjct: 124 IGDVLEVD 131

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score =  209 bits (533), Expect = 2e-69
 Identities = 59/167 (35%), Positives = 95/167 (56%), Gaps = 5/167 (2%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPD---SVKLQRVEERLSALGNVIACNDYVALVH 57
           +SV N++GL++P    D EL  I+N L +    + ++ ++ + +ALGN+I  ND  AL+ 
Sbjct: 62  LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALIS 121

Query: 58  PDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117
           P+L    ++I  D+LNVEV   T++    VGS   +TN+G L HP     + + L SL +
Sbjct: 122 PELKDFKKDI-EDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK 180

Query: 118 IPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           +  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 181 VEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score = 59.2 bits (143), Expect = 3e-11
 Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 41  SALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLV 100
             +G +    + + L+   LD++    +++ L  +  +  +  + LVGS       G L+
Sbjct: 13  PTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLL 72

Query: 101 HPHTSPQDQDELSSLLQIPLVAGTVNRGSE---VIGAGMVVNDWAAFCGFDTTSTEISVI 157
                 ++ D + + L+   +   V         +G  ++ ND  A    +    +   I
Sbjct: 73  PKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFK-KDI 131

Query: 158 ESVFKLN 164
           E    + 
Sbjct: 132 EDSLNVE 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	99.97
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	99.97
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	99.95

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=5.4e-62  Score=416.33  Aligned_cols=183  Identities=63%  Similarity=1.089  Sum_probs=162.9

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |++||+||+|||++++|+|+++||++||++++|.++++|++|+|||++|||++|+|||+++++..+.|+|+|||||++++
T Consensus        65 l~~GN~nGllvp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~t  144 (248)
T 4a18_J           65 VTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTT  144 (248)
T ss_dssp             HCEEETTEEEECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECC
T ss_pred             EEEecCCeEEeCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |+|+++||+++++||+|+||||.++++|+++|+++|+|++.+||+|+|.++||+|++|||+||+|||+||++|+++||++
T Consensus       145 Iags~lVGs~~v~Nn~G~LVhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~  224 (248)
T 4a18_J          145 IANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENI  224 (248)
T ss_dssp             BTTBSCHHHHEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHH
T ss_pred             cCCcceeEEEEEEeCCeEEECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCchhHHHHHHHhhhhh
Q psy3570         161 FKLNEAQPSAITTSMRASLIDSI  183 (184)
Q Consensus       161 Lgv~~~~~~~~~~~~~~~~~~~~  183 (184)
                      ||+.++||++++++||++|||+.
T Consensus       225 l~v~~~~~~~~~~~~~~~~~~~~  247 (248)
T 4a18_J          225 FKLNEMKDENMDNEMRKDFVMNL  247 (248)
T ss_dssp             TTCC-------------------
T ss_pred             hCCCCCCchHHHHHHHHHHHhhc
Confidence            99999999999999999999985

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=1e-56  Score=379.24  Aligned_cols=163  Identities=77%  Similarity=1.196  Sum_probs=161.4

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |++||+||+|||++++|+|+++||++||++++|.++++|++++|||++|||++|+|||++++++.+.|+|+||||+++++
T Consensus        62 l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~t  141 (224)
T 1g62_A           62 MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQT  141 (224)
T ss_dssp             HCEECSSEEEEETTCCHHHHHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECC
T ss_pred             EEEecCceEEcCCcCCHHHHHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |+|+++||+++++||+|+||||+++++|++.|+++|+|++.+||+|+|.++||++++|||+|++|||+||++|+++||++
T Consensus       142 Iag~~lVGs~~v~nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~  221 (224)
T 1g62_A          142 ISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESI  221 (224)
T ss_dssp             BTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHH
T ss_pred             ecCcceEEEEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC
Q psy3570         161 FKL  163 (184)
Q Consensus       161 Lgv  163 (184)
                      |++
T Consensus       222 f~v  224 (224)
T 1g62_A          222 FRL  224 (224)
T ss_dssp             TTC
T ss_pred             hCc
Confidence            986

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=3.6e-48  Score=326.79  Aligned_cols=162  Identities=33%  Similarity=0.517  Sum_probs=158.2

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |++||+||+|||+.++|+|+++||+.   +++|.+++.|++++||+++|||++|+|||+++++..+.|+|+|||++.+.+
T Consensus        60 ~~~~N~~gllvp~~~~d~e~~~l~~~---~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~  136 (222)
T 4adx_I           60 LAVGNSNGFVVSNQAMDREIDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVST  136 (222)
T ss_pred             EEEecCCEEEECCCCCHHHHHHHHhc---CCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEe
Confidence            67999999999999999999999983   799999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      +++.+++|+++++||+|+||||.++++|++.|+++|+|++.+||+|+|.++||++++|||+|++|||+||++|+++||++
T Consensus       137 i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~  216 (222)
T 4adx_I          137 LAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEA  216 (222)
T ss_pred             cCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCC
Q psy3570         161 FKLNE  165 (184)
Q Consensus       161 Lgv~~  165 (184)
                      ||+.+
T Consensus       217 f~~~~  221 (222)
T 4adx_I          217 LGFLE  221 (222)
T ss_pred             hcccc
Confidence            99754

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=8.8e-47  Score=319.42  Aligned_cols=162  Identities=36%  Similarity=0.552  Sum_probs=159.0

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhC---CCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEE
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSL---PDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVF   77 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l---~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi   77 (184)
                      |++||+||+|||+.++|+|+++||++|   |++++|.++++|++++||+++|||++|+|||++ ++..+.|+|+|+|++.
T Consensus        62 ~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~  140 (228)
T 1g61_A           62 LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVE  140 (228)
T ss_dssp             HCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEE
T ss_pred             EEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceE
Confidence            578999999999999999999999988   788999999999999999999999999999999 9999999999999999


Q ss_pred             EEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcc-eeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHH
Q psy3570          78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP-LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISV  156 (184)
Q Consensus        78 ~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~-v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~  156 (184)
                      +.+|++..++|+.++.+|+|+||||+++++|++.|+++|+|+ +.+||+|+|.++||++++|||+|++|||+||++|+++
T Consensus       141 ~~~i~~~~tvg~n~v~tN~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~  220 (228)
T 1g61_A          141 IGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLI  220 (228)
T ss_dssp             ECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHH
T ss_pred             EEEeCCccceeeEEEEecceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHH
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHhCC
Q psy3570         157 IESVFKL  163 (184)
Q Consensus       157 IedvLgv  163 (184)
                      ||++|||
T Consensus       221 Ie~~f~v  227 (228)
T 1g61_A          221 IEDALGL  227 (228)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcc
Confidence            9999997

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=2.2e-32  Score=230.58  Aligned_cols=159  Identities=19%  Similarity=0.246  Sum_probs=148.5

Q ss_pred             ccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEec-cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           2 SVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         2 ~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~-~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      +..|+.=.|+|.-.++.-.+.+++.|  ++++.+.. .+.+.+|.|+++||+++++||..+++..+.|++ ++|++.+++
T Consensus        17 ~~~t~~~~lv~~~~~~~~~~~~~~~L--~v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~v~V~~~~   93 (222)
T 4adx_I           17 ISVTDSVALIPQNTPEKFEGVLREAL--EVEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AGVEAVRIP   93 (222)
T ss_pred             EEEeCCEEEEcCCCCHHHHHHHHHHh--CCcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cCCeEEEEC
Confidence            34567778999999999999999987  46665543 588999999999999999999999999999999 599999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                       ++++.+|.++++||+|+||||+++++|++.|+++|||++.++++ ++.+++||.++|||+|++|||++|++|++.|+|+
T Consensus        94 -~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~  171 (222)
T 4adx_I           94 -ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALLNPQASSEEIGIIEDT  171 (222)
T ss_pred             -CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEec-CCccceEEEEEEeCceEEECCCCCHHHHHHHHHH
Confidence             99999999999999999999999999999999999999999998 8899999999999999999999999999999999


Q ss_pred             hCCCC
Q psy3570         161 FKLNE  165 (184)
Q Consensus       161 Lgv~~  165 (184)
                      |+|+.
T Consensus       172 L~V~v  176 (222)
T 4adx_I          172 LGVEA  176 (222)
T ss_pred             hCCCE
Confidence            99996

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=99.97  E-value=1.3e-31  Score=228.83  Aligned_cols=128  Identities=15%  Similarity=0.203  Sum_probs=123.7

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL  115 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~  115 (184)
                      ++.+.+|+|+++||+||++||+.+++..+.|++.|+  +|+++|+|+|+++||+|++||+||+|||+.++|+|++.|++.
T Consensus        11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~   90 (248)
T 4a18_J           11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS   90 (248)
T ss_dssp             TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence            578999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570         116 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  165 (184)
Q Consensus       116 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~  165 (184)
                      |+-.+...++..+.+++|+.++|||++|+|||+++++..+.|+|+|||++
T Consensus        91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV  140 (248)
T 4a18_J           91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEV  140 (248)
T ss_dssp             SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEE
T ss_pred             CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcE
Confidence            87666667999999999999999999999999999999999999999997

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=99.97  E-value=2.5e-31  Score=224.33  Aligned_cols=128  Identities=18%  Similarity=0.229  Sum_probs=124.0

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL  115 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~  115 (184)
                      ++.+.+|+|+++||+||++||+.+++..+.|++.|+  +|+++++|+|++++|+|++||+||+|||+.++|+|++.|++.
T Consensus         8 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~   87 (224)
T 1g62_A            8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhh
Confidence            578999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570         116 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  165 (184)
Q Consensus       116 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~  165 (184)
                      |+..+...++..+.+++|+.++|||++|+|||+++++..+.|+|+|||+.
T Consensus        88 l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV  137 (224)
T 1g62_A           88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV  137 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred             CCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcE
Confidence            77777777999999999999999999999999999999999999999997

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=99.95  E-value=3.5e-29  Score=211.72  Aligned_cols=127  Identities=16%  Similarity=0.271  Sum_probs=118.5

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcC
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ  117 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~  117 (184)
                      ++.+.+|+|+++||+||++||+.+++..+.|++.|++|+++++|+|++++|+|+++|++|+||||.++|+|++.|++.|+
T Consensus        10 ~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~   89 (228)
T 1g61_A           10 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK   89 (228)
T ss_dssp             TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999874


Q ss_pred             ---cceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570         118 ---IPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  165 (184)
Q Consensus       118 ---V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~  165 (184)
                         .++....+..+.+++|+.+++||+|++|||++ ++..+.|+|+|+++.
T Consensus        90 ~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV  139 (228)
T 1g61_A           90 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEV  139 (228)
T ss_dssp             HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEE
T ss_pred             ccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCce
Confidence               33334467789999999999999999999999 777799999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	3e-81
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	2e-08
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	2e-77
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	2e-08

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  238 bits (609), Expect = 3e-81
 Identities = 126/163 (77%), Positives = 146/163 (89%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 60
           M+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD+
Sbjct: 62  MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDI 121

Query: 61  DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 120
           DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+PL
Sbjct: 122 DRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPL 181

Query: 121 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           VAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 182 VAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 43  LGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLV 100
           +G      +   LV               L   + +   T++   ++G   A   +G LV
Sbjct: 13  IGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLV 72

Query: 101 HPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 160
              T+ Q+   L + L   +    V      +G  +  ND+ A    D       +I  V
Sbjct: 73  PTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDV 132

Query: 161 FK 162
             
Sbjct: 133 LG 134

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  228 bits (584), Expect = 2e-77
 Identities = 58/167 (34%), Positives = 98/167 (58%), Gaps = 5/167 (2%)

Query: 1   MSVGNRHGLIVPNATTDTELQHIRNSLPDS---VKLQRVEERLSALGNVIACNDYVALVH 57
           +SV N++GL++P    D EL  I+N L ++   + ++ ++ + +ALGN+I  ND  AL+ 
Sbjct: 60  LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALIS 119

Query: 58  PDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQ 117
           P+L ++ ++ + D+LNVEV   T++    VGS   +TN+G L HP     + + L SL +
Sbjct: 120 PEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFK 178

Query: 118 IPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 163
           +  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 179 VEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 225

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 4/125 (3%)

Query: 43  LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 102
           +G +    + + L+   LD++    +++ L  +  +  +  + LVGS       G L+  
Sbjct: 13  IGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPK 72

Query: 103 HTSPQDQDELSSLLQ---IPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIES 159
               ++ D + + L+   + L    +   +  +G  ++ ND  A    +        IE 
Sbjct: 73  IVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPE-LKDFKKDIED 131

Query: 160 VFKLN 164
              + 
Sbjct: 132 SLNVE 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	99.97
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	99.97

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-55  Score=366.10  Aligned_cols=163  Identities=77%  Similarity=1.196  Sum_probs=161.3

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCCCCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEe
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQT   80 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~t   80 (184)
                      |++||+||+|||++++|+|+++||+++|++++|.++++|.+|+||.|+|||++|++||+++++..+.|+|+||||+++++
T Consensus        62 l~~GN~nGllvp~~~td~El~~L~~~l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~t  141 (224)
T d1g62a_          62 MTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQT  141 (224)
T ss_dssp             HCEECSSEEEEETTCCHHHHHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECC
T ss_pred             eeecccCeEEeCCcCCHHHHHHHHhhCCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEE
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHH
Q psy3570          81 VSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV  160 (184)
Q Consensus        81 Iags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~Iedv  160 (184)
                      |||.++|||++++||+|+|+||+++++|+++|+++|+|++..||+|+|.++||+|++|||+|++||.+||++|+.|||++
T Consensus       142 iag~~~VGs~~v~tn~G~LvhP~~t~~E~~~l~~~l~V~~~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~~  221 (224)
T d1g62a_         142 ISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESI  221 (224)
T ss_dssp             BTTBSCGGGSEEECSSCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHH
T ss_pred             ecCccceeeEEEEcCCceeecCCCCHHHHHHHHHHhCCCcccceeeCCCCCceeEEEEcCceEEEcCCCCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCC
Q psy3570         161 FKL  163 (184)
Q Consensus       161 Lgv  163 (184)
                      |++
T Consensus       222 ~~l  224 (224)
T d1g62a_         222 FRL  224 (224)
T ss_dssp             TTC
T ss_pred             hcC
Confidence            985

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.1e-53  Score=356.84  Aligned_cols=162  Identities=36%  Similarity=0.553  Sum_probs=156.7

Q ss_pred             CccccCCeEEeCCCCCHHHHHHHHhhCC---CCceEEEeccccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEE
Q psy3570           1 MSVGNRHGLIVPNATTDTELQHIRNSLP---DSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVF   77 (184)
Q Consensus         1 l~~gN~nGllvp~~~~~~E~~~l~~~l~---~~~~v~~l~~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi   77 (184)
                      |++||+||+|||++++|+|+++||++||   .|++|.++++|.||+||.|+|||++|+|||++ ++..+.|+|+||||++
T Consensus        60 l~~GN~nGllvp~~~~d~El~~l~~~l~~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l-~e~~e~I~dvL~Vev~  138 (225)
T d1g61a_          60 LSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVE  138 (225)
T ss_dssp             HCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEE
T ss_pred             EEeccCCeEEeCCcCCHHHHHHHHhhcccccCCceEEEeCCcccccccEEEEcCcceEecccc-chHHHHHHHhhCceEE
Confidence            6899999999999999999999999975   46999999999999999999999999999999 5678999999999999


Q ss_pred             EEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCcc-eeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHH
Q psy3570          78 RQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP-LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISV  156 (184)
Q Consensus        78 ~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~l~V~-v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~  156 (184)
                      +.+|||..+|||++++||+|+|+||+++++|+++|+++|+|+ +..||+|+|.++||+|++|||+|++||.+||++|+.|
T Consensus       139 r~~iag~~~VGs~~v~tn~G~LvhP~~s~~E~~~l~~~l~V~~v~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~  218 (225)
T d1g61a_         139 IGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLI  218 (225)
T ss_dssp             ECCBTTBSCTTTSEEECSSEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHH
T ss_pred             EEEeCCcccceeEEEEeccceEECCCCCHHHHHHHHHHhCCCcccccceeCCCCCceeEEEEcCceEEEcCCCchHHHHH
Confidence            999999999999999999999999999999999999999999 5789999999999999999999999999999999999


Q ss_pred             HHHHhCC
Q psy3570         157 IESVFKL  163 (184)
Q Consensus       157 IedvLgv  163 (184)
                      ||++||+
T Consensus       219 Ie~a~~l  225 (225)
T d1g61a_         219 IEDALGL  225 (225)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhCC
Confidence            9999985

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-33  Score=231.55  Aligned_cols=128  Identities=18%  Similarity=0.229  Sum_probs=123.4

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhh
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL  115 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~Lg--Vevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~El~~l~~~  115 (184)
                      +..+++|+|+++||+||++||+++++..+.+++.|+  +|+++++|+||+++|+|++||+||+|||..++|+|++.|++.
T Consensus         8 ~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~   87 (224)
T d1g62a_           8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhh
Confidence            578899999999999999999999999999999998  999999999999999999999999999999999999999999


Q ss_pred             cCcceeeEeeccCCcceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3570         116 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  165 (184)
Q Consensus       116 l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt~~El~~IedvLgv~~  165 (184)
                      ++-.+...++..+.+++||.|+|||+||+|||+++.+..+.|+|+|||+.
T Consensus        88 l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev  137 (224)
T d1g62a_          88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEV  137 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEE
T ss_pred             CCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceE
Confidence            86666667999999999999999999999999999999999999999997

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=2.1e-32  Score=228.82  Aligned_cols=126  Identities=17%  Similarity=0.326  Sum_probs=115.0

Q ss_pred             cccccceeEEEeeCcEEEEcCCCChhHHHHHhhhcCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHH---------
Q psy3570          38 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQD---------  108 (184)
Q Consensus        38 ~k~~~iGn~i~aNd~~alVpp~~~~~~~~~I~e~LgVevi~~tIags~lVGsl~v~Nn~G~LV~p~~~d~E---------  108 (184)
                      +..+.+|+|+++||+||++||+++++..+.|+++|++|+++++|+||+++|+|++||+||+|||+.++|+|         
T Consensus         8 ~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~   87 (225)
T d1g61a_           8 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK   87 (225)
T ss_dssp             TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcc
Confidence            57899999999999999999999999999999999999999999999999999999888887744444444         


Q ss_pred             --------------------------------------HHHHhhhcCcceeeEeeccCCcceeeEEEEcCceEEEcCCCC
Q psy3570         109 --------------------------------------QDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTT  150 (184)
Q Consensus       109 --------------------------------------l~~l~~~l~V~v~~gtvn~g~~~VGs~ivaNd~GalV~p~tt  150 (184)
                                                            .+.|+++|||++.++++ +|...|||.+++||+|+||||++|
T Consensus        88 ~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~e~~e~I~dvL~Vev~r~~i-ag~~~VGs~~v~tn~G~LvhP~~s  166 (225)
T d1g61a_          88 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPELKDFKKDIEDSLNVEVEIGTI-AELPTVGSNAVVTNKGCLTHPLVE  166 (225)
T ss_dssp             HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGGGGHHHHHHHHCSEEEECCB-TTBSCTTTSEEECSSEEEECTTCC
T ss_pred             cccCCceEEEeCCcccccccEEEEcCcceEeccccchHHHHHHHhhCceEEEEEe-CCcccceeEEEEeccceEECCCCC
Confidence                                                  45556778888889998 999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q psy3570         151 STEISVIESVFKLN  164 (184)
Q Consensus       151 ~~El~~IedvLgv~  164 (184)
                      ++|+++|+++|+|+
T Consensus       167 ~~E~~~l~~~l~V~  180 (225)
T d1g61a_         167 DDELEFLKSLFKVE  180 (225)
T ss_dssp             HHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999998