Psyllid ID: psy3572

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Secondary Structure (PSIPRED)
ccEEEEEcccccEEEEEEEcccEEEEcccccHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEEcccEEEEcccccHHHHHHHHHHcccccEEEEEcccccccccEEEEEccEEEEcccccHHHHHHHHHHHccEEEEEEEcccccEEEEEEEEcccEEccccccHHHHHHHHHHcccEEEEEEEEccccccEEEEEEEccEEEEcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcEccEccHHHHEEEccccEEEEccccHHHHHHHHHHHcccccEEEEcEccEccHHHHcEEcccEEEEEccccHHHHHHHHHHcccccEEEEEccccccHHHHEEEcccEEEEcccccHHHHHHHHHHHccEEEEccEccEccHHHcEEEccccEEEcccccHHHHHHHHHHHcccEEEccEcccEccHHHHEEEccccEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRiigrmsvgnrhglivpnattdtELQHIRnslpdsvkLQRVEERLSALGnviacndyvalvhpdldreTEEILADTLNVEVFRQTVSSNVLVGSYCaltnqgglvhphtspqdqdeLSSLlqiplvagtvnrgsevigagmvvndwaafcgfdttstEISVIESVFKlneaqpsaiTTSMRASLIDSIA
Flexible Loop (DISEMBL)
mavrvqfennnevgvfSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRnslpdsvkLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKlneaqpsaittsmraslidsia
Low Complexity Region (SEG)
MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Disordered region (IsUnstruct)
*********NNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH************SLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLN********************
Disordered Region (DISOPRED)
MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Disordered Region (DISEMBL)
MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH*********ELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Disordered Region (DISPRO)
MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASLIDSIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q6ZM19	245	Eukaryotic translation in	yes	N/A	0.995	0.995	0.836	1e-120
Q6GR45	245	Eukaryotic translation in	N/A	N/A	0.995	0.995	0.827	1e-120
Q3KRD8	245	Eukaryotic translation in	yes	N/A	0.995	0.995	0.827	1e-119
P56537	245	Eukaryotic translation in	yes	N/A	0.995	0.995	0.823	1e-119
Q9TU47	245	Eukaryotic translation in	yes	N/A	0.995	0.995	0.831	1e-119
O55135	245	Eukaryotic translation in	yes	N/A	0.995	0.995	0.823	1e-118
P56538	245	Eukaryotic translation in	yes	N/A	1.0	1.0	0.763	1e-114
Q12522	245	Eukaryotic translation in	yes	N/A	0.991	0.991	0.732	1e-108
Q9M060	245	Eukaryotic translation in	yes	N/A	0.991	0.991	0.728	1e-107
Q59L13	245	Eukaryotic translation in	N/A	N/A	0.991	0.991	0.728	1e-107

>sp|Q6ZM19|IF6_DANRE Eukaryotic translation initiation factor 6 OS=Danio rerio GN=eif6 PE=2 SV=1

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/244 (83%), Positives = 222/244 (90%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVR  FE NNE+G F+KLTN+YCLVAIGGSENFYSVFE EL+ET+PVIHAS+AGCRIIG
Sbjct: 1   MAVRASFEKNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETMPVIHASIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM VGNRHGL+VPN TTD ELQHIRN LPDSV++QRVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILADTL VEVFRQTV+  VLVGSYCA +NQGGLVH  TS +DQDELSSLLQ+P
Sbjct: 121 LDRETEEILADTLKVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SVIESVF+L+E QPSAI T+MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSL 240

Query: 241 IDSI 244
           IDS+
Sbjct: 241 IDSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
Danio rerio (taxid: 7955)

>sp|Q6GR45|IF6_XENLA Eukaryotic translation initiation factor 6 OS=Xenopus laevis GN=eif6 PE=2 SV=1

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 222/244 (90%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVR  FENNNE+G F+KLTN+YCLVAIGGSENFYSVFE EL+ETIPV+HAS+AGCRIIG
Sbjct: 1   MAVRASFENNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETIPVVHASIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM VGNRHGL+VPN TTD ELQH+RNSLPDSV++QRVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RMCVGNRHGLMVPNNTTDQELQHMRNSLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILAD L VEVFRQT++  VLVGSYCA +NQGGL+HP TS +DQDELSSLLQ+P
Sbjct: 121 LDRETEEILADVLKVEVFRQTIAEQVLVGSYCAFSNQGGLLHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LV GTVNRGSEVI AGMVVNDW AFCG DTTSTE+SVIESVFKL++A PS I TSMR SL
Sbjct: 181 LVTGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFKLSDAHPSTIATSMRDSL 240

Query: 241 IDSI 244
           IDS+
Sbjct: 241 IDSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Xenopus laevis (taxid: 8355)

>sp|Q3KRD8|IF6_RAT Eukaryotic translation initiation factor 6 OS=Rattus norvegicus GN=Eif6 PE=2 SV=1

 Score =  427 bits (1097), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/244 (82%), Positives = 220/244 (90%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVR  FENN EVG F+KLTN+YCLVAIGGSENFYSVFE EL++TIPV+HAS+AGCRIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPD
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query: 241 IDSI 244
           IDS+
Sbjct: 241 IDSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Rattus norvegicus (taxid: 10116)

>sp|P56537|IF6_HUMAN Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1

 Score =  427 bits (1097), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 201/244 (82%), Positives = 220/244 (90%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVR  FENN E+G F+KLTN+YCLVAIGGSENFYSVFE EL++TIPV+HAS+AGCRIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM VGNRHGL+VPN TTD ELQHIRNSLPD+V+++RVEERLSALGNV  CNDYVALVHPD
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query: 241 IDSI 244
           IDS+
Sbjct: 241 IDSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Homo sapiens (taxid: 9606)

>sp|Q9TU47|IF6_BOVIN Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2

 Score =  427 bits (1097), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/244 (83%), Positives = 218/244 (89%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVR  FENN E+G F+KLTNSYCLVAIGGSENFYSVFE ELA TIPV+HAS+AGCRIIG
Sbjct: 1   MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM VGNRHGL+VPN TTD ELQHIRN LPDSV+++RVEERLSALGNV  CNDYVALVHPD
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query: 241 IDSI 244
           IDS+
Sbjct: 241 IDSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Bos taurus (taxid: 9913)

>sp|O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2

 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/244 (82%), Positives = 219/244 (89%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVR  FENN EVG F+KLTN+YCLVAIGGSENFYSVFE EL++ IPV+HAS+AGCRIIG
Sbjct: 1   MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPD
Sbjct: 61  RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct: 121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query: 241 IDSI 244
           IDS+
Sbjct: 241 IDSL 244

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May behave as a stimulatory translation initiation factor downstream insulin/growth factors. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by a RACK1 (GNB2L1)-dependent protein kinase C activity.

Mus musculus (taxid: 10090)

>sp|P56538|IF6_DROME Eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 187/245 (76%), Positives = 224/245 (91%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA+RVQFENN+++GVF+KLTN+YCLVAIGGSE FYS FEAEL +TIPV+HA++ GCRIIG
Sbjct: 1   MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R++VGNR+GL+VPN+TTD ELQH+RNSLPD+VK+ RVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LD+ETEEI+AD L VEVFRQT++ N LVGSY  L+NQGG+VHP TS QDQDELSSLLQ+P
Sbjct: 121 LDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGSEV+ AGMVVNDW +F G +TT+TEISVIESVFKLN+AQP+ +TT +RA+L
Sbjct: 181 LVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAAL 240

Query: 241 IDSIA 245
           I+ ++
Sbjct: 241 IEDMS 245

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q12522|IF6_YEAST Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1

 Score =  392 bits (1007), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/243 (73%), Positives = 215/243 (88%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           +DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L +AQP +I+ ++R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240

Query: 241 IDS 243
           I++
Sbjct: 241 IET 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export. Cytoplasmic release of TIF6 from 60S subunits and nuclear relocalization is promoted by the GTPase RIA1/EFL1 and by SDO1. Also required for pre-rRNA processing.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9M060|IF62_ARATH Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 177/243 (72%), Positives = 212/243 (87%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R+QFENN EVGVFSKLTN+YCLVAIGGSENFYS FE+ELA+ IP++  S+ G RIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R+  GN++GL+VP+ TTD ELQH+RNSLPD V +QR++ERLSALGN IACNDYVAL H D
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LD+ETEEI+AD L VEVFRQT++ N+LVGSYCAL+N+GG+VHPHTS +D +ELS+LLQ+P
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMVHPHTSVEDLEELSTLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGSEVI AGM VNDW +FCG DTT+TE+SVI+S+FKL EAQPS+I   MR SL
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTSFCGSDTTATELSVIDSIFKLREAQPSSIVDEMRKSL 240

Query: 241 IDS 243
           ID+
Sbjct: 241 IDT 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q59L13|IF6_CANAL Eukaryotic translation initiation factor 6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TIF6 PE=3 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 177/243 (72%), Positives = 212/243 (87%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+NEVGVFS LTNSYCLVA+GGSENFYS FEAEL + IP++H ++AG RI+G
Sbjct: 1   MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+ GNR GL+VP  TTD EL H+RNSLPDS+K+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           ++RETEE++AD L VEVFRQT++ NVLVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTSIQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGS V+GAGMVVNDW +  G DTT+ E+SVIES+F+L +AQP AI  ++R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDWLSVAGLDTTAPELSVIESIFRLQDAQPDAIGGNLRDTL 240

Query: 241 IDS 243
           I++
Sbjct: 241 IET 243

Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
48094369	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.877	1e-124
82880642	245	p27BBP/eIF6-like [Spodoptera frugiperda]	1.0	1.0	0.861	1e-123
383865070	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.865	1e-123
380022205	246	PREDICTED: eukaryotic translation initia	1.0	0.995	0.873	1e-123
114052170	245	eukaryotic translation initiation factor	1.0	1.0	0.857	1e-123
242019432	245	eukaryotic translation initiation factor	1.0	1.0	0.865	1e-122
340709042	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.869	1e-122
350419365	245	PREDICTED: eukaryotic translation initia	1.0	1.0	0.865	1e-122
307201556	253	Eukaryotic translation initiation factor	0.987	0.956	0.859	1e-121
270483897	245	eukaryotic translation initiation factor	1.0	1.0	0.857	1e-121

>gi|48094369|ref|XP_392115.1| PREDICTED: eukaryotic translation initiation factor 6 isoform 1 [Apis mellifera]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/245 (87%), Positives = 233/245 (95%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHAS+AGCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASVAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R+ VGN++GL+VPN TTDTELQHIRNSLPD VK+QRVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RLCVGNKNGLLVPNTTTDTELQHIRNSLPDKVKVQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILADTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP TS QDQDELSSLLQ+P
Sbjct: 121 LDRETEEILADTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTSIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           L AGTVNRGS+VI AGMVVNDW +FCG DTTSTE+SVIESVFKLNEA P+AIT++MRASL
Sbjct: 181 LAAGTVNRGSDVIAAGMVVNDWVSFCGMDTTSTELSVIESVFKLNEAAPAAITSTMRASL 240

Query: 241 IDSIA 245
           I+S++
Sbjct: 241 IESMS 245

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|82880642|gb|ABB92838.1| p27BBP/eIF6-like [Spodoptera frugiperda]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/245 (86%), Positives = 237/245 (96%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAEL+ETIPV+H S+AGCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELSETIPVVHVSIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+VGN++GL+VP++TTDTELQHIRNSLPD+VK+QRVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RMTVGNKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDR+TEEILADTL+VEVFRQTV+ NVLVGSY AL+N+GGLVHP T+ QDQDELSSLLQ+P
Sbjct: 121 LDRDTEEILADTLDVEVFRQTVAGNVLVGSYAALSNRGGLVHPKTTIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGS+VI AGMVVNDW AFCG DTTSTEISVIESVFKLN+A+P+AIT++MRASL
Sbjct: 181 LVAGTVNRGSDVIAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASL 240

Query: 241 IDSIA 245
           IDS++
Sbjct: 241 IDSMS 245

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865070|ref|XP_003707998.1| PREDICTED: eukaryotic translation initiation factor 6-like [Megachile rotundata]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/245 (86%), Positives = 234/245 (95%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTN+YCLVAIGGSENFYSVFEAELAETIPV+HAS+AGCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNAYCLVAIGGSENFYSVFEAELAETIPVVHASVAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R+ VGN++GL+VPN TTDTELQHIRNSLPD+VK+QR+EERLSALGNVIACNDYVALVHPD
Sbjct: 61  RLCVGNKNGLLVPNTTTDTELQHIRNSLPDNVKVQRIEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILADTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP TS QDQDELSSLLQ+P
Sbjct: 121 LDRETEEILADTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTSIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           L AGTVNRGS+VI AGMVVNDW +FCG DTTSTE+SVIESVFKLNEA P+AIT++MRASL
Sbjct: 181 LAAGTVNRGSDVIAAGMVVNDWVSFCGMDTTSTELSVIESVFKLNEAAPAAITSTMRASL 240

Query: 241 IDSIA 245
           I+S++
Sbjct: 241 IESMS 245

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022205|ref|XP_003694943.1| PREDICTED: eukaryotic translation initiation factor 6-like [Apis florea]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/246 (87%), Positives = 233/246 (94%), Gaps = 1/246 (0%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHAS+AGCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASVAGCRIIG 60

Query: 61  RMSVG-NRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHP 119
           R+ VG N++GL+VPN TTDTELQHIRNSLPD VK+QRVEERLSALGNVIACNDYVALVHP
Sbjct: 61  RLCVGKNKNGLLVPNTTTDTELQHIRNSLPDKVKVQRVEERLSALGNVIACNDYVALVHP 120

Query: 120 DLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQI 179
           DLDRETEEILADTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP TS QDQDELSSLLQ+
Sbjct: 121 DLDRETEEILADTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTSIQDQDELSSLLQV 180

Query: 180 PLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRAS 239
           PL AGTVNRGS+VI AGMVVNDW +FCG DTTSTE+SVIESVFKLNEA P+AIT++MRAS
Sbjct: 181 PLAAGTVNRGSDVIAAGMVVNDWVSFCGMDTTSTELSVIESVFKLNEAAPAAITSTMRAS 240

Query: 240 LIDSIA 245
           LI+S++
Sbjct: 241 LIESMS 246

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052170|ref|NP_001040517.1| eukaryotic translation initiation factor 6 [Bombyx mori] gi|95102688|gb|ABF51282.1| eukaryotic translation initiation factor 6 [Bombyx mori]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/245 (85%), Positives = 237/245 (96%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTN+YCLVAIGGSENFYSVFEAELAETIPVIHAS+ GCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+VGN++GL+VP++TTDTELQHIRNSLP++VKLQRVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LD++TEEILADTLNVEVFRQT++ NVLVGSY AL+N+GGLVHP T+ QDQDELSSLLQ+P
Sbjct: 121 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGS+V+ AGMVVNDW AFCG DTTSTEISVIESVFKLN+A+P+AIT++MRASL
Sbjct: 181 LVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFKLNDAKPTAITSTMRASL 240

Query: 241 IDSIA 245
           IDS++
Sbjct: 241 IDSMS 245

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019432|ref|XP_002430165.1| eukaryotic translation initiation factor, putative [Pediculus humanus corporis] gi|212515256|gb|EEB17427.1| eukaryotic translation initiation factor, putative [Pediculus humanus corporis]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/245 (86%), Positives = 232/245 (94%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAEL+E+IPVIH+S+ GCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELSESIPVIHSSIGGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM VGN++GL+VPN TTDTELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMCVGNKNGLLVPNTTTDTELQHLRNSLPDSVKIQRVEERLSALGNVITCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEIL+D L+VEVFR TV+SNVLVGSY  L+N GGLVHP TS QDQDELSSLLQ+P
Sbjct: 121 LDRETEEILSDVLSVEVFRHTVASNVLVGSYTILSNNGGLVHPKTSIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGS+VI AGMVVNDW+AFCG DTTSTEISVIESVFKLNEAQPSAITT+MRASL
Sbjct: 181 LVAGTVNRGSDVIAAGMVVNDWSAFCGMDTTSTEISVIESVFKLNEAQPSAITTAMRASL 240

Query: 241 IDSIA 245
           I+S++
Sbjct: 241 IESMS 245

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709042|ref|XP_003393124.1| PREDICTED: eukaryotic translation initiation factor 6-like [Bombus terrestris]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/245 (86%), Positives = 232/245 (94%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHAS+AGCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASVAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R+ VGN++GL+VPN TTDTELQHIRNSLPD+VK+QRVEERLSALGNVIACND+VALVHPD
Sbjct: 61  RLCVGNKNGLLVPNTTTDTELQHIRNSLPDNVKVQRVEERLSALGNVIACNDHVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEIL DTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP TS QDQDELSSLLQ+P
Sbjct: 121 LDRETEEILTDTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTSIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           L AGTVNRGS+VI  GMVVNDW AFCG DTTSTE+SVIESVFKLNEA P+AIT++MRASL
Sbjct: 181 LAAGTVNRGSDVIAGGMVVNDWVAFCGMDTTSTELSVIESVFKLNEAVPTAITSTMRASL 240

Query: 241 IDSIA 245
           I+S++
Sbjct: 241 IESMS 245

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419365|ref|XP_003492156.1| PREDICTED: eukaryotic translation initiation factor 6-like [Bombus impatiens]

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/245 (86%), Positives = 231/245 (94%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHAS+AGCRIIG
Sbjct: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASVAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R+ VGN++GL+VPN TTDTELQHIRNSLPD+VK+QRVEERLSALGNVIACND+VALVHPD
Sbjct: 61  RLCVGNKNGLLVPNTTTDTELQHIRNSLPDNVKVQRVEERLSALGNVIACNDHVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEIL DTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP T  QDQDELSSLLQ+P
Sbjct: 121 LDRETEEILTDTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTCIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           L AGTVNRGS+VI  GMVVNDW AFCG DTTSTE+SVIESVFKLNEA P+AIT++MRASL
Sbjct: 181 LAAGTVNRGSDVIAGGMVVNDWVAFCGMDTTSTELSVIESVFKLNEAVPTAITSTMRASL 240

Query: 241 IDSIA 245
           I+S++
Sbjct: 241 IESMS 245

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201556|gb|EFN81318.1| Eukaryotic translation initiation factor 6 [Harpegnathos saltator]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/242 (85%), Positives = 228/242 (94%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNE+GVFSKLTNSYCLVAIGGSENFYSVFEAEL+ETIPVIHAS+AGCRIIG
Sbjct: 1   MAVRVQFENNNEIGVFSKLTNSYCLVAIGGSENFYSVFEAELSETIPVIHASIAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R+ +GN+ GL+VPN TTD ELQHIRNSLPD+VK+QRVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RLCIGNKSGLLVPNTTTDIELQHIRNSLPDNVKVQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILADTLNVEVFRQT++SNVLVGSY  L+NQGG+VHP TS QDQDELSSLLQ+P
Sbjct: 121 LDRETEEILADTLNVEVFRQTIASNVLVGSYSVLSNQGGMVHPKTSIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           L AGTVNRGS VI AGMVVNDW +FCG +TTSTE+SVIESVFKLNEA P+AIT+SMRASL
Sbjct: 181 LAAGTVNRGSNVIAAGMVVNDWVSFCGMETTSTELSVIESVFKLNEANPAAITSSMRASL 240

Query: 241 ID 242
           I+
Sbjct: 241 IE 242

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270483897|ref|NP_001162022.1| eukaryotic translation initiation factor 6 [Nasonia vitripennis]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/245 (85%), Positives = 230/245 (93%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MAVRVQFENNNE+GVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIH S+AGCRIIG
Sbjct: 1   MAVRVQFENNNEIGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHTSVAGCRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R+ VGN++GL++PN  TDTELQ IRNSLPD+VK+QRVEERLSALGNVIACNDYVALVHPD
Sbjct: 61  RLCVGNKNGLLIPNTATDTELQQIRNSLPDNVKVQRVEERLSALGNVIACNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEILADTLNVEVFRQTV+SNVLVGSY  L+NQGGLVHP TS QDQDELSSLLQ+P
Sbjct: 121 LDRETEEILADTLNVEVFRQTVASNVLVGSYSVLSNQGGLVHPKTSIQDQDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGT+NRGSEVI AGMVVNDW +FCG DTTSTEISVIE+VFKLNE+  SAIT+ MRASL
Sbjct: 181 LVAGTINRGSEVIAAGMVVNDWISFCGMDTTSTEISVIENVFKLNESSASAITSVMRASL 240

Query: 241 IDSIA 245
           I+S++
Sbjct: 241 IESMS 245

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
ZFIN|ZDB-GENE-031118-110	245	eif6 "eukaryotic translation i	0.995	0.995	0.836	4.4e-107
UNIPROTKB|Q9TU47	245	EIF6 "Eukaryotic translation i	0.995	0.995	0.831	2.5e-106
UNIPROTKB|P56537	245	EIF6 "Eukaryotic translation i	0.995	0.995	0.823	2.5e-106
RGD|1305373	245	Eif6 "eukaryotic translation i	0.995	0.995	0.827	2.5e-106
UNIPROTKB|F1NGL6	242	EIF6 "Eukaryotic translation i	0.987	1.0	0.830	4e-106
MGI|MGI:1196288	245	Eif6 "eukaryotic translation i	0.995	0.995	0.823	8.3e-106
UNIPROTKB|E2R1S5	242	EIF6 "Eukaryotic translation i	0.987	1.0	0.826	9.5e-105
FB|FBgn0034915	245	eIF6 "eIF6" [Drosophila melano	1.0	1.0	0.763	1.1e-101
SGD|S000006220	245	TIF6 "Constituent of 66S pre-r	0.991	0.991	0.732	2e-97
CGD|CAL0001603	245	orf19.1815 [Candida albicans (	0.991	0.991	0.728	1.1e-96

ZFIN|ZDB-GENE-031118-110 eif6 "eukaryotic translation initiation factor 6" [Danio rerio (taxid:7955)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 204/244 (83%), Positives = 222/244 (90%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MAVR  FE NNE+G F+KLTN+YCLVAIGGSENFYSVFE EL+ET+PVIHAS+AGCRIIG
Sbjct:     1 MAVRASFEKNNEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSETMPVIHASIAGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM VGNRHGL+VPN TTD ELQHIRN LPDSV++QRVEERLSALGNVIACNDYVALVHPD
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVRIQRVEERLSALGNVIACNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LDRETEEILADTL VEVFRQTV+  VLVGSYCA +NQGGLVH  TS +DQDELSSLLQ+P
Sbjct:   121 LDRETEEILADTLKVEVFRQTVAEQVLVGSYCAFSNQGGLVHAKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SVIESVF+L+E QPSAI T+MR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESVFRLSETQPSAIATTMRDSL 240

Query:   241 IDSI 244
             IDS+
Sbjct:   241 IDSL 244

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

UNIPROTKB|Q9TU47 EIF6 "Eukaryotic translation initiation factor 6" [Bos taurus (taxid:9913)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 203/244 (83%), Positives = 218/244 (89%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MAVR  FENN E+G F+KLTNSYCLVAIGGSENFYSVFE ELA TIPV+HAS+AGCRIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM VGNRHGL+VPN TTD ELQHIRN LPDSV+++RVEERLSALGNV  CNDYVALVHPD
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query:   241 IDSI 244
             IDS+
Sbjct:   241 IDSL 244

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

UNIPROTKB|P56537 EIF6 "Eukaryotic translation initiation factor 6" [Homo sapiens (taxid:9606)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 201/244 (82%), Positives = 220/244 (90%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MAVR  FENN E+G F+KLTN+YCLVAIGGSENFYSVFE EL++TIPV+HAS+AGCRIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM VGNRHGL+VPN TTD ELQHIRNSLPD+V+++RVEERLSALGNV  CNDYVALVHPD
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query:   241 IDSI 244
             IDS+
Sbjct:   241 IDSL 244

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0042256 "mature ribosome assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1305373 Eif6 "eukaryotic translation initiation factor 6" [Rattus norvegicus (taxid:10116)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 202/244 (82%), Positives = 220/244 (90%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MAVR  FENN EVG F+KLTN+YCLVAIGGSENFYSVFE EL++TIPV+HAS+AGCRIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPD
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query:   241 IDSI 244
             IDS+
Sbjct:   241 IDSL 244

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

UNIPROTKB|F1NGL6 EIF6 "Eukaryotic translation initiation factor 6" [Gallus gallus (taxid:9031)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 201/242 (83%), Positives = 218/242 (90%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MAVR  FENNNE G F+KLTN+YCLVAIGGSENFYSVFE EL  TIPV+HAS+AGCRIIG
Sbjct:     1 MAVRASFENNNEQGCFAKLTNAYCLVAIGGSENFYSVFEGELFGTIPVVHASIAGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM VGNRHGL+VP++TTD ELQHIRNSLPDSV++QRVEERLSALGNV  CNDYVALVHPD
Sbjct:    61 RMCVGNRHGLLVPSSTTDQELQHIRNSLPDSVRIQRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGG+VHP TS +DQDELSSLLQ+P
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGIVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEVIGAGMVVNDW AFCG DTTSTE+SVIES+FKLNEAQPS I T+MR SL
Sbjct:   181 LVAGTVNRGSEVIGAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSL 240

Query:   241 ID 242
             ID
Sbjct:   241 ID 242

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

MGI|MGI:1196288 Eif6 "eukaryotic translation initiation factor 6" [Mus musculus (taxid:10090)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 201/244 (82%), Positives = 219/244 (89%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MAVR  FENN EVG F+KLTN+YCLVAIGGSENFYSVFE EL++ IPV+HAS+AGCRIIG
Sbjct:     1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM VGNRHGL+VPN TTD ELQHIRNSLPDSV+++RVEERLSALGNV  CNDYVALVHPD
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LDRETEEILAD L VEVFRQTV+  VLVGSYC  +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEA+PS I TSMR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSL 240

Query:   241 IDSI 244
             IDS+
Sbjct:   241 IDSL 244

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005638 "lamin filament" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005882 "intermediate filament" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0007229 "integrin-mediated signaling pathway" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

UNIPROTKB|E2R1S5 EIF6 "Eukaryotic translation initiation factor 6" [Canis lupus familiaris (taxid:9615)]

 Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
 Identities = 200/242 (82%), Positives = 216/242 (89%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MAVR  FENN E+G F+KLTN+YCLVAIGGSENFYSVFE ELA+TIPV+HAS+AGCRIIG
Sbjct:     1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELADTIPVVHASIAGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM VGNRHGL+VPN TTD ELQHIRN LPDSV+++RVEERLSALGNV  CNDYVALVHPD
Sbjct:    61 RMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LDRETEEILAD L VEVFRQTV+  VLVGSY   +NQGGLVHP TS +DQDELSSLLQ+P
Sbjct:   121 LDRETEEILADVLKVEVFRQTVADQVLVGSYSVFSNQGGLVHPKTSIEDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEVI AGMVVNDW AFCG DTTSTE+SV+ESVFKLNEAQPS I TSMR SL
Sbjct:   181 LVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSL 240

Query:   241 ID 242
             ID
Sbjct:   241 ID 242

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005638 "lamin filament" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

FB|FBgn0034915 eIF6 "eIF6" [Drosophila melanogaster (taxid:7227)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 187/245 (76%), Positives = 224/245 (91%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MA+RVQFENN+++GVF+KLTN+YCLVAIGGSE FYS FEAEL +TIPV+HA++ GCRIIG
Sbjct:     1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             R++VGNR+GL+VPN+TTD ELQH+RNSLPD+VK+ RVEERLSALGNVIACNDYVALVHPD
Sbjct:    61 RLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             LD+ETEEI+AD L VEVFRQT++ N LVGSY  L+NQGG+VHP TS QDQDELSSLLQ+P
Sbjct:   121 LDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGSEV+ AGMVVNDW +F G +TT+TEISVIESVFKLN+AQP+ +TT +RA+L
Sbjct:   181 LVAGTVNRGSEVLAAGMVVNDWLSFVGMNTTATEISVIESVFKLNQAQPATVTTKLRAAL 240

Query:   241 IDSIA 245
             I+ ++
Sbjct:   241 IEDMS 245

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0006412 "translation" evidence=NAS

GO:0006413 "translational initiation" evidence=ISS

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0043022 "ribosome binding" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

SGD|S000006220 TIF6 "Constituent of 66S pre-ribosomal particles" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 178/243 (73%), Positives = 215/243 (88%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct:     1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct:    61 RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             +DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct:   121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L +AQP +I+ ++R +L
Sbjct:   181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240

Query:   241 IDS 243
             I++
Sbjct:   241 IET 243

GO:0043023 "ribosomal large subunit binding" evidence=IEA;IDA

GO:0043022 "ribosome binding" evidence=IEA

GO:0042273 "ribosomal large subunit biogenesis" evidence=IEA;IMP;IPI

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IDA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0005730 "nucleolus" evidence=IEA;IDA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA;IGI

GO:0006364 "rRNA processing" evidence=IGI

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0042256 "mature ribosome assembly" evidence=IEA

GO:0006412 "translation" evidence=IEA

CGD|CAL0001603 orf19.1815 [Candida albicans (taxid:5476)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 177/243 (72%), Positives = 212/243 (87%)

Query:     1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
             MA R QFEN+NEVGVFS LTNSYCLVA+GGSENFYS FEAEL + IP++H ++AG RI+G
Sbjct:     1 MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query:    61 RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
             RM+ GNR GL+VP  TTD EL H+RNSLPDS+K+QRVEERLSALGNVI CNDYVALVHPD
Sbjct:    61 RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query:   121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
             ++RETEE++AD L VEVFRQT++ NVLVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct:   121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLVHPQTSIQDQEELSSLLQVP 180

Query:   181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
             LVAGTVNRGS V+GAGMVVNDW +  G DTT+ E+SVIES+F+L +AQP AI  ++R +L
Sbjct:   181 LVAGTVNRGSSVVGAGMVVNDWLSVAGLDTTAPELSVIESIFRLQDAQPDAIGGNLRDTL 240

Query:   241 IDS 243
             I++
Sbjct:   241 IET 243

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030687 "preribosome, large subunit precursor" evidence=IEA

GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

GO:0000054 "ribosomal subunit export from nucleus" evidence=IEA

GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O58264	IF6_PYRHO	No assigned EC number	0.3424	0.8734	0.9427	yes	N/A
B6YWY2	IF6_THEON	No assigned EC number	0.3333	0.8734	0.9385	yes	N/A
P56538	IF6_DROME	No assigned EC number	0.7632	1.0	1.0	yes	N/A
Q18EU8	IF6_HALWD	No assigned EC number	0.3155	0.9020	0.9778	yes	N/A
Q60357	IF6_METJA	No assigned EC number	0.3114	0.9020	0.9692	yes	N/A
P56537	IF6_HUMAN	No assigned EC number	0.8237	0.9959	0.9959	yes	N/A
Q6GR45	IF6_XENLA	No assigned EC number	0.8278	0.9959	0.9959	N/A	N/A
Q9TU47	IF6_BOVIN	No assigned EC number	0.8319	0.9959	0.9959	yes	N/A
O55135	IF6_MOUSE	No assigned EC number	0.8237	0.9959	0.9959	yes	N/A
Q9UYI6	IF6_PYRAB	No assigned EC number	0.3482	0.8938	0.9647	yes	N/A
Q2UTN7	IF6_ASPOR	No assigned EC number	0.7327	0.9469	0.9392	yes	N/A
Q8PYQ3	IF6_METMA	No assigned EC number	0.3177	0.8448	0.9452	yes	N/A
Q5JGT4	IF6_PYRKO	No assigned EC number	0.3454	0.8734	0.9344	yes	N/A
A7ANL7	IF6_BABBO	No assigned EC number	0.5846	0.9959	0.9799	N/A	N/A
A4RSQ6	IF6_OSTLU	No assigned EC number	0.6885	0.9959	0.9959	yes	N/A
B9PVB9	IF6_TOXGO	No assigned EC number	0.6425	1.0	0.9839	N/A	N/A
Q9M060	IF62_ARATH	No assigned EC number	0.7283	0.9918	0.9918	yes	N/A
B8MDN4	IF6_TALSN	No assigned EC number	0.7073	0.9959	0.9878	N/A	N/A
Q2FS97	IF6_METHJ	No assigned EC number	0.2927	0.8816	0.9773	yes	N/A
Q551M2	IF6_DICDI	No assigned EC number	0.6639	0.9959	1.0	yes	N/A
C9SV08	IF6_VERA1	No assigned EC number	0.7090	0.9918	0.9878	N/A	N/A
O22290	IF61_ARATH	No assigned EC number	0.5714	0.9918	0.9838	no	N/A
A2BN57	IF6_HYPBU	No assigned EC number	0.3425	0.8693	0.9466	yes	N/A
Q6ZM19	IF6_DANRE	No assigned EC number	0.8360	0.9959	0.9959	yes	N/A
Q7S2W6	IF6_NEUCR	No assigned EC number	0.7061	0.9959	0.9918	N/A	N/A
Q8SS47	IF6_ENCCU	No assigned EC number	0.4549	0.9755	0.9917	yes	N/A
C3N7D3	IF6_SULIY	No assigned EC number	0.3198	0.8571	0.9417	yes	N/A
Q3ITD5	IF6_NATPD	No assigned EC number	0.3258	0.8816	0.9773	yes	N/A
Q59L13	IF6_CANAL	No assigned EC number	0.7283	0.9918	0.9918	N/A	N/A
Q5ASA6	IF6_EMENI	No assigned EC number	0.7413	0.9469	0.9392	yes	N/A
D1ZG64	IF6_SORMK	No assigned EC number	0.7020	0.9959	0.9918	N/A	N/A
Q245F2	IF6_TETTS	No assigned EC number	0.6514	0.9836	0.9836	N/A	N/A
O81920	IF6_BETVU	No assigned EC number	0.7409	0.7877	1.0	N/A	N/A
O62106	IF6_CAEEL	No assigned EC number	0.6326	0.9959	0.9918	yes	N/A
C5A7H2	IF6_THEGJ	No assigned EC number	0.3378	0.8734	0.9385	yes	N/A
Q4E097	IF61_TRYCC	No assigned EC number	0.5967	1.0	0.9879	N/A	N/A
A7I9I6	IF6_METB6	No assigned EC number	0.3181	0.8734	0.9727	yes	N/A
Q2NGQ7	IF6_METST	No assigned EC number	0.3083	0.9061	0.9910	yes	N/A
Q8U3S8	IF6_PYRFU	No assigned EC number	0.3561	0.8734	0.9427	yes	N/A
B0EMY3	IF6_ENTDS	No assigned EC number	0.5892	0.9102	0.9330	N/A	N/A
Q3KRD8	IF6_RAT	No assigned EC number	0.8278	0.9959	0.9959	yes	N/A
Q12522	IF6_YEAST	No assigned EC number	0.7325	0.9918	0.9918	yes	N/A
Q9YD27	IF6_AERPE	No assigned EC number	0.3410	0.8734	0.9184	yes	N/A
Q46FA1	IF6_METBF	No assigned EC number	0.3177	0.8448	0.9452	yes	N/A
Q980G0	IF6_SULSO	No assigned EC number	0.3198	0.8571	0.9417	yes	N/A
O94476	IF6_SCHPO	No assigned EC number	0.7325	0.9877	0.9918	yes	N/A
Q98RM8	IF6_GUITH	No assigned EC number	0.3452	0.9102	0.9780	yes	N/A
O27648	IF6_METTH	No assigned EC number	0.3039	0.9061	1.0	yes	N/A
Q12ZJ5	IF6_METBU	No assigned EC number	0.2968	0.8612	0.9723	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	245
PTZ00136	247	PTZ00136, PTZ00136, eukaryotic translation initiat	1e-159
cd00527	220	cd00527, IF6, Ribosome anti-association factor IF6	1e-121
smart00654	200	smart00654, eIF6, translation initiation factor 6	1e-111
pfam01912	197	pfam01912, eIF-6, eIF-6 family	1e-105
COG1976	222	COG1976, TIF6, Translation initiation factor 6 (eI	2e-97
TIGR00323	216	TIGR00323, eIF-6, translation initiation factor eI	3e-86
PRK04046	222	PRK04046, PRK04046, translation initiation factor	3e-61
smart00654	200	smart00654, eIF6, translation initiation factor 6	1e-04

>gnl|CDD|185471 PTZ00136, PTZ00136, eukaryotic translation initiation factor 6-like protein; Provisional

 Score =  441 bits (1135), Expect = e-159
 Identities = 181/247 (73%), Positives = 212/247 (85%), Gaps = 2/247 (0%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA+R QFEN+N++GVFSKLTNSYCLVA+GGSENFYSVFE+ELA  IPV+H ++ G R+IG
Sbjct: 1   MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R++VGNR GL+VP+  TD ELQH+RNSLPDSVK+QRVEERLSALGN IACNDYVAL+HPD
Sbjct: 61  RLTVGNRKGLLVPSICTDQELQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRETEEI+ D L VEVFR T++ NVLVG+YC  TNQGGLVHP TS Q+ DELSSLLQ+P
Sbjct: 121 LDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMDELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQ--PSAITTSMRA 238
           LVAGTVNRGS+VIGAG+VVNDWAAFCG DTT+TEISVIE +FKL  A          +R+
Sbjct: 181 LVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS 240

Query: 239 SLIDSIA 245
           SLID++A
Sbjct: 241 SLIDTLA 247

Length = 247

>gnl|CDD|238292 cd00527, IF6, Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

 Score =  343 bits (882), Expect = e-121
 Identities = 125/222 (56%), Positives = 160/222 (72%), Gaps = 2/222 (0%)

Query: 2   AVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGR 61
           A+R+ FE +  +GVF+K TNSYCLV  GG ENF S FE EL   +PV+  ++ G R++G 
Sbjct: 1   AIRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGS 58

Query: 62  MSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDL 121
           ++VGN +GL++P+ TTD ELQHIRNSLPD V + RV+E LSALGNVI CND+ ALVHPDL
Sbjct: 59  LTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDL 118

Query: 122 DRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPL 181
            +E EEI+ D L VEVFR T++    VGS   LTN+GGLVHP TS ++ +ELS L ++P+
Sbjct: 119 SKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPV 178

Query: 182 VAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK 223
           VAGTVN GS+ +GAG+V N   A  G DTT  E+S IE    
Sbjct: 179 VAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Length = 220

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score =  318 bits (816), Expect = e-111
 Identities = 129/201 (64%), Positives = 161/201 (80%), Gaps = 2/201 (0%)

Query: 4   RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMS 63
           R+ FE +  +GV+ KLTNSYCLV +GG ENFYSV E  L   +PV+H S+ G R+IGR++
Sbjct: 2   RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLT 59

Query: 64  VGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDR 123
           VGN +GL+VPN TTD ELQH+RNSLPDSV++QRVEERL+ALGN+I CND+ AL  PDL +
Sbjct: 60  VGNSNGLLVPNTTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSK 119

Query: 124 ETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVA 183
           ETEEI++D L VEVFR T++ N+ VGSYC +TN+GGLVHP TS ++  ELS LL +PLVA
Sbjct: 120 ETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELKELSELLGVPLVA 179

Query: 184 GTVNRGSEVIGAGMVVNDWAA 204
           GTVN GSEV+GAG+V ND  A
Sbjct: 180 GTVNFGSEVVGAGLVANDNGA 200

Length = 200

>gnl|CDD|202042 pfam01912, eIF-6, eIF-6 family

 Score =  303 bits (778), Expect = e-105
 Identities = 108/201 (53%), Positives = 143/201 (71%), Gaps = 4/201 (1%)

Query: 4   RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMS 63
           R+  E +  +GVF++ TN Y LV  G SE FYSV E EL   + V+  S+AG R++G ++
Sbjct: 1   RLSIEGSPNIGVFARATNDYALVPPGLSEEFYSVIEEELG--VEVVETSIAGSRLVGSLT 58

Query: 64  VGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDR 123
           VGN +GL+VP+  TD EL H++ SL   V ++R+EE+L+ALGNVI  ND  ALVHPDL R
Sbjct: 59  VGNSNGLLVPSTATDEELDHLKESL--DVNVERLEEKLTALGNVILANDKGALVHPDLSR 116

Query: 124 ETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVA 183
           ETEEI+AD L VEVFR T++ N  VGS    TN+GGLVHP  + ++ +ELS LL +P+ A
Sbjct: 117 ETEEIIADVLGVEVFRGTIAGNKTVGSAGVATNKGGLVHPDATEEELEELSELLGVPVDA 176

Query: 184 GTVNRGSEVIGAGMVVNDWAA 204
           GTVNRGS ++GAG+V ND  A
Sbjct: 177 GTVNRGSPLVGAGLVANDKGA 197

This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologues. Length = 197

>gnl|CDD|224887 COG1976, TIF6, Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

 Score =  283 bits (727), Expect = 2e-97
 Identities = 96/224 (42%), Positives = 134/224 (59%), Gaps = 4/224 (1%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M  R+ FE +  +GV++K T SY LV  G  E F  V    L   +PV+  ++AG R++G
Sbjct: 2   MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVG 59

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
            ++ GN +GL+VP    D EL+ ++N     V++  +  +L+ALGN+I  ND  ALVHPD
Sbjct: 60  ALTAGNSNGLLVPYGVRDEELRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPD 117

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           L  E E+ + D L VEV R T++    VGS   LTN+GGLVHP TS ++ +ELS L  +P
Sbjct: 118 LSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELEELSELFGVP 177

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           +  GTVN GS  +GAG+V N   A  G DTT  E++ IE     
Sbjct: 178 VDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221

Length = 222

>gnl|CDD|211569 TIGR00323, eIF-6, translation initiation factor eIF-6, putative

 Score =  254 bits (651), Expect = 3e-86
 Identities = 124/222 (55%), Positives = 160/222 (72%), Gaps = 7/222 (3%)

Query: 4   RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMS 63
           R QF  N E+GV++K+T  Y LV + GSENFYS FE EL   +PV+H ++AG  ++G ++
Sbjct: 1   RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGALT 58

Query: 64  VGNRHGLIVPNATTDTELQHIRNSLPDS-VKLQRVEERLSALGNVIACNDYVALVHPDLD 122
           VGN  GL+V     D  L H  +SLPDS VK+QR+EERL+ALGN+I CNDY AL  P+LD
Sbjct: 59  VGNSRGLLVS----DQVLDHELDSLPDSLVKVQRIEERLTALGNLILCNDYGALASPELD 114

Query: 123 RETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLV 182
           R+TEE+++D L VEVFR T++  + VGSY  +TN+GGLVHP TS Q+Q+ELSSLL + LV
Sbjct: 115 RDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELV 174

Query: 183 AGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           AGTVNRG+ V+GA MV N   A  G DTT  E+S+IE    L
Sbjct: 175 AGTVNRGTTVVGACMVANSKGAVVGLDTTGPELSIIEEALGL 216

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative [Protein synthesis, Translation factors]. Length = 216

>gnl|CDD|179728 PRK04046, PRK04046, translation initiation factor IF-6; Provisional

 Score =  191 bits (488), Expect = 3e-61
 Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 4/226 (1%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M  R+    +  +GV+++ T+ Y LV     E      E  L   + V+  ++AG  ++G
Sbjct: 1   MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVG 58

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
            ++ GN +G++VP+   D EL+ ++ +L   + ++ +  +L+ALGN+I  ND  ALVHP+
Sbjct: 59  SLAAGNSNGILVPSIVLDEELELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPE 116

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           L  E  +++ DTL VEV R T++    VGS   +TN+GGLVHP  + ++   L  L ++ 
Sbjct: 117 LSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELKFLEDLFKVE 176

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE 226
           +  GTVN GS ++G+G+V N   A  G DTT  E+  IE      E
Sbjct: 177 VDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222

Length = 222

>gnl|CDD|128902 smart00654, eIF6, translation initiation factor 6

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 25/118 (21%), Positives = 44/118 (37%)

Query: 104 LGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP 163
           +G  I   +   LV    D     ++ + L V V   ++  + L+G      + G LV  
Sbjct: 11  IGVYIKLTNSYCLVPVGGDENFYSVIEEVLGVPVVHTSIGGSRLIGRLTVGNSNGLLVPN 70

Query: 164 HTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESV 221
            T+ Q+   L + L   +    V      +G  ++ ND  A    D +     +I  V
Sbjct: 71  TTTDQELQHLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDV 128

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	100.0
KOG3185|consensus	245		100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
smart00654	200	eIF6 translation initiation factor 6.	100.0
cd00527	220	IF6 Ribosome anti-association factor IF6 binds the	100.0
TIGR00323	215	eIF-6 translation initiation factor eIF-6, putativ	100.0
PRK04046	222	translation initiation factor IF-6; Provisional	100.0
PTZ00136	247	eukaryotic translation initiation factor 6-like pr	100.0
PF01912	199	eIF-6: eIF-6 family; InterPro: IPR002769 This fami	99.97
COG1976	222	TIF6 Translation initiation factor 6 (eIF-6) [Tran	99.96
KOG3185|consensus	245		99.77

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=5.1e-84  Score=577.76  Aligned_cols=245  Identities=73%  Similarity=1.176  Sum_probs=240.8

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus         1 m~~r~~~~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (247)
T PTZ00136          1 MALRTQFENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQE   80 (247)
T ss_pred             CceeEEecCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||++|||+++|+++++|++|+|||++|||++||+||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus        81 l~~l~~~l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~L  160 (247)
T PTZ00136         81 LQHLRNSLPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGL  160 (247)
T ss_pred             HHHHHHhCcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC--CCCcchHHHHHH
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE--AQPSAITTSMRA  238 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~--~~~~~~~~~~~~  238 (245)
                      |||+++++|+++|+++||||+.+||+|+|+++||||++|||||++|||+||++|+++||++||++.  ..+..+..+||+
T Consensus       161 VhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~  240 (247)
T PTZ00136        161 VHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRS  240 (247)
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccCCchhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998  556668899999


Q ss_pred             hhhhhhC
Q psy3572         239 SLIDSIA  245 (245)
Q Consensus       239 ~~~~~~~  245 (245)
                      +|||++.
T Consensus       241 ~~~~~~~  247 (247)
T PTZ00136        241 SLIDTLA  247 (247)
T ss_pred             HHHHhhC
Confidence            9999974

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.1e-78  Score=530.08  Aligned_cols=220  Identities=44%  Similarity=0.697  Sum_probs=217.7

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+|+|+  +|+++|+|+||++||+|++|||||+|||+.++|+|
T Consensus         2 mi~r~~~~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~E   79 (222)
T COG1976           2 MIRRLSFEGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEE   79 (222)
T ss_pred             ceEEEEecCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHH
Confidence            8899999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||+  +++++|.++++|+||+||.|+||||+||+||++++++.|.|+|+|||||+|++|||.++|||+++.||||+|
T Consensus        80 l~~l~~--~~~v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~L  157 (222)
T COG1976          80 LRRLKN--ALGVEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGL  157 (222)
T ss_pred             HHhhcc--cCCceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcce
Confidence            999998  678999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL  224 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v  224 (245)
                      +||.++++|+|+|+++|+|++..||+|+|+++||+|++|||||++||.+||+|||.|||++|++
T Consensus       158 vhP~~s~~Ele~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~aLg~  221 (222)
T COG1976         158 VHPETSDEELEELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF  221 (222)
T ss_pred             eCCCCCHHHHHHHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999984

>KOG3185|consensus

Probab=100.00  E-value=2.4e-77  Score=516.10  Aligned_cols=245  Identities=79%  Similarity=1.242  Sum_probs=242.5

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |..|++|+||++||+|+++||.||+|..+.+++|++.||++|+|.+|+++|+|+|+++||+||+||+||+|||+++||+|
T Consensus         1 Ma~R~qfens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqE   80 (245)
T KOG3185|consen    1 MALRVQFENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQE   80 (245)
T ss_pred             CceeeeecCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      |+|||++|||.+.++|+++|++|+||.|+|||++||+|||++++++++|+|+|+|||+|.+||+..+|||||+.+|+|+|
T Consensus        81 lqHlRnSLPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~l  160 (245)
T KOG3185|consen   81 LQHLRNSLPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGL  160 (245)
T ss_pred             HHHHHhcCCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCCCCCcchHHHHHHhh
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL  240 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~~~~~~~~~~~~~~~  240 (245)
                      |||.++-|++++|+++|+||+..||+|+|+..+|+|+++|||-+++|.+||..|+..||.+|++.+.+|..+..+||++|
T Consensus       161 Vhp~Ts~e~q~Els~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiFkL~~aqp~~i~~~~R~~l  240 (245)
T KOG3185|consen  161 VHPRTSVEDQDELSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIFKLNEAQPSSISSELRDTL  240 (245)
T ss_pred             ecCCCCHHHHHHHHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHHhhcccCchhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             hhhhC
Q psy3572         241 IDSIA  245 (245)
Q Consensus       241 ~~~~~  245 (245)
                      ||++.
T Consensus       241 id~~~  245 (245)
T KOG3185|consen  241 IDSYV  245 (245)
T ss_pred             HHhcC
Confidence            99974

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=100.00  E-value=1e-73  Score=497.75  Aligned_cols=199  Identities=47%  Similarity=0.795  Sum_probs=173.2

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHH
Q psy3572           3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQ   82 (245)
Q Consensus         3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~   82 (245)
                      +|++|+|||+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||||||++++|+|++
T Consensus         1 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~   78 (199)
T PF01912_consen    1 QRLSFYGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELE   78 (199)
T ss_dssp             -EE-BTTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHH
T ss_pred             CeEEEeCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHH
Confidence            69999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeC
Q psy3572          83 HIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH  162 (245)
Q Consensus        83 ~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~  162 (245)
                      +||+++| +++|+++++|+||+||+|+|||++|++||+++++++|.|+|+|||||++++|||.++|||++++||+|+|||
T Consensus        79 ~Lk~~~~-~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~Lvh  157 (199)
T PF01912_consen   79 HLKESLP-DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVH  157 (199)
T ss_dssp             HHHHHS--TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-
T ss_pred             HHHhhCC-CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEEC
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceE
Q psy3572         163 PHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAA  204 (245)
Q Consensus       163 p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~  204 (245)
                      |+++++|+++|+++|+||+..||||+|+++||+|++|||||+
T Consensus       158 P~~s~eEl~~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~  199 (199)
T PF01912_consen  158 PDASEEELEELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA  199 (199)
T ss_dssp             TT--HHHHHHHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred             CCCCHHHHHHHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence            999999999999999999999999999999999999999997

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=5.8e-65  Score=450.03  Aligned_cols=222  Identities=36%  Similarity=0.599  Sum_probs=218.8

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||+|+++||+|||+|++++++.++.|++.|+  |++++++|+||+++|+|++||+||+|+|+.++++|
T Consensus         1 ~i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e   78 (222)
T PRK04046          1 MIRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEE   78 (222)
T ss_pred             CcEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHH
Confidence            8999999999999999999999999999999999999999998  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++|++.|  +++|.+++.+++++||++++||++|++||+++++..+.|+|+|||+|++.+|++.++||+++++||+|+|
T Consensus        79 ~~~l~e~L--~v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~l  156 (222)
T PRK04046         79 LELLKEAL--DLNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGL  156 (222)
T ss_pred             HHHHHHhc--CceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEE
Confidence            99999987  7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  226 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~  226 (245)
                      |||+++++|+++|++.|+|++.+||+|+|+++||||++|||||++|||+||++|+++||++||+.+
T Consensus       157 v~p~~t~~ei~~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~l~~~~  222 (222)
T PRK04046        157 VHPDATDEELKFLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE  222 (222)
T ss_pred             ECCCCCHHHHHHHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999753

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=7e-65  Score=449.08  Aligned_cols=219  Identities=57%  Similarity=0.908  Sum_probs=211.4

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHH
Q psy3572           3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQ   82 (245)
Q Consensus         3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~   82 (245)
                      +|++|+|+|+||+|+++||+|||+|++.++++.+.|+|+|+  +++++|+|+||++||+|++||++|+|||+.++|+|++
T Consensus         2 ~~~~~~g~~~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~   79 (220)
T cd00527           2 IRLSFEGSPNIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQ   79 (220)
T ss_pred             eeEEEeCCCCeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHH
Confidence            69999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeC
Q psy3572          83 HIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH  162 (245)
Q Consensus        83 ~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~  162 (245)
                      +||++|+.++.+.+...+.+++||++++||++||+||.++++.++.|+|+|+|+|++.+|++.+.+|+++++||+|+|+|
T Consensus        80 ~l~~~L~~~V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~Lvh  159 (220)
T cd00527          80 HIRNSLPDEVGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVH  159 (220)
T ss_pred             HHHHhcCCCeEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEEC
Confidence            99999876566655555555999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhC
Q psy3572         163 PHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFK  223 (245)
Q Consensus       163 p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~  223 (245)
                      |+++++|++.|+++|||++.+||+|+|.++|||+++|||||++|||+||++|+++||++||
T Consensus       160 P~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie~~l~  220 (220)
T cd00527         160 PKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG  220 (220)
T ss_pred             CCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999996

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=1e-62  Score=434.00  Aligned_cols=215  Identities=56%  Similarity=0.942  Sum_probs=211.4

Q ss_pred             eeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHH
Q psy3572           4 RVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQH   83 (245)
Q Consensus         4 r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~   83 (245)
                      |++|+|||+||+|+++||+||++|++.++++.+.|+|+|+  +++++++|+||++||+|+++|++|+|||+..++++++.
T Consensus         1 ~~~~~g~~~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~   78 (215)
T TIGR00323         1 RTQFSGNPEIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDS   78 (215)
T ss_pred             CeeeeCCCCEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHh
Confidence            6899999999999999999999999999999999999999  99999999999999999999999999999999999999


Q ss_pred             HHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCC
Q psy3572          84 IRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHP  163 (245)
Q Consensus        84 l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p  163 (245)
                      |++.    ++|.+++++.+++||++++||++|++||.++++..+.|+|.|+++|++.+|++..++|+++++||+|+||||
T Consensus        79 l~e~----l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP  154 (215)
T TIGR00323        79 LPDS----LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHP  154 (215)
T ss_pred             hHhh----cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECC
Confidence            9874    788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572         164 HTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL  224 (245)
Q Consensus       164 ~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v  224 (245)
                      +++++|++.|+++|||++.+||+|+|.++|||+++|||||++|||+||++|+++||++||+
T Consensus       155 ~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~l~~  215 (215)
T TIGR00323       155 QTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEALGL  215 (215)
T ss_pred             CCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999985

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=1.3e-60  Score=416.51  Aligned_cols=200  Identities=65%  Similarity=1.056  Sum_probs=197.7

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHH
Q psy3572           3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQ   82 (245)
Q Consensus         3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~   82 (245)
                      .|++|+|||+||+|+++||+|||+|++.+++.++.|++.|+  +++++|+|++++++|+|++||+||+|+|+.++|+|++
T Consensus         1 ~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~   78 (200)
T smart00654        1 DRLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQ   78 (200)
T ss_pred             CeEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHH
Confidence            48999999999999999999999999999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeC
Q psy3572          83 HIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVH  162 (245)
Q Consensus        83 ~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~  162 (245)
                      +|+++|+++++|.+++.+++|+||+++|||++||+||+++++.+|.|+|+||||++++||+|.++|||.+++||+|+|||
T Consensus        79 ~i~~~L~d~v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~  158 (200)
T smart00654       79 HLRNSLPDSVEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVH  158 (200)
T ss_pred             HHHHhcCCCeeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceE
Q psy3572         163 PHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAA  204 (245)
Q Consensus       163 p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~  204 (245)
                      |+++++|+++|+++|++|+..||+|+|+++||+|++|||||+
T Consensus       159 ~~tt~~El~~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~  200 (200)
T smart00654      159 PDTSEEELKELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA  200 (200)
T ss_pred             CCCCHHHHHHHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence            999999999999999999999999999999999999999996

>smart00654 eIF6 translation initiation factor 6

Probab=100.00  E-value=8e-46  Score=323.57  Aligned_cols=173  Identities=20%  Similarity=0.252  Sum_probs=167.7

Q ss_pred             EEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHH
Q psy3572          50 HASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEI  128 (245)
Q Consensus        50 ~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~  128 (245)
                      +++|+||++||+|+++|++|+|||+.++++|+++|++.|+  ++|.++. .+++++||++++||++||+||.++++..+.
T Consensus         2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~   79 (200)
T smart00654        2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQH   79 (200)
T ss_pred             eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHH
Confidence            7899999999999999999999999999999999999885  7887876 999999999999999999999999999999


Q ss_pred             HHhhhC--CceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEE
Q psy3572         129 LADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFC  206 (245)
Q Consensus       129 I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lv  206 (245)
                      |++.|+  ++|.+.+.. .+.+|+++++||+|+|+||+++++|+++|+++|+|++.+||+ +|.++|||+++|||||++|
T Consensus        80 i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv  157 (200)
T smart00654       80 LRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLV  157 (200)
T ss_pred             HHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEE
Confidence            999997  999998887 999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhCCCC
Q psy3572         207 GFDTTSTEISVIESVFKLNE  226 (245)
Q Consensus       207 g~~tT~~Ei~~Ie~~l~v~~  226 (245)
                      ||+||++|+++||++||++.
T Consensus       158 ~~~tt~~El~~ie~~l~v~~  177 (200)
T smart00654      158 HPDTSEEELKELSELLGVPL  177 (200)
T ss_pred             CCCCCHHHHHHHHHHhCCCc
Confidence            99999999999999999986

>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation

Probab=100.00  E-value=4.5e-45  Score=322.93  Aligned_cols=175  Identities=19%  Similarity=0.232  Sum_probs=167.9

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+||++||+|+++|++|+|+|+..+++..+.|++.|+.+|+++++++.+| ++|.|++||+||+|||+.++|+|
T Consensus        44 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e  122 (220)
T cd00527          44 PVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEA  122 (220)
T ss_pred             cEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHH
Confidence            78999999999999999999999999999999999999999998899999999999 99999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe-cCceeeeeEEEEcCCe
Q psy3572          81 LQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV-SSNVLVGSYCALTNQG  158 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G  158 (245)
                      +++|++.|+.  +|.+.+ .+++++||+++|||++||+||+++++..+.|+|+||||+.++|+ +|+++|||.+++||+|
T Consensus       123 ~~~i~~~L~v--~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG  200 (220)
T cd00527         123 EEIIEDVLGV--EVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKG  200 (220)
T ss_pred             HHHHHHhcCC--cEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCE
Confidence            9999999864  555555 56999999999999999999999999999999999999999999 9999999999999999


Q ss_pred             EeeCCCCCHHHHHHHhhhcC
Q psy3572         159 GLVHPHTSPQDQDELSSLLQ  178 (245)
Q Consensus       159 ~LV~p~~s~eEl~~l~~~l~  178 (245)
                      +||||+++++|+++|+++|+
T Consensus       201 ~lvg~~tt~~El~~ie~~l~  220 (220)
T cd00527         201 AVVGSDTTGPELSRIEDALG  220 (220)
T ss_pred             EEECCCCCHHHHHHHHHHhC
Confidence            99999999999999999886

IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.

>TIGR00323 eIF-6 translation initiation factor eIF-6, putative

Probab=100.00  E-value=1.3e-44  Score=319.03  Aligned_cols=172  Identities=19%  Similarity=0.231  Sum_probs=165.9

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||+|+++||+|||+|++.+++..+.|+|.|+  |++++|+|   +++|.|++||+||+|+|+.++|+|
T Consensus        42 ~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e  116 (215)
T TIGR00323        42 PVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDT  116 (215)
T ss_pred             cEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHH
Confidence            7899999999999999999999999999999999999999999  99999999   999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe-cCceeeeeEEEEcCCe
Q psy3572          81 LQHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV-SSNVLVGSYCALTNQG  158 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G  158 (245)
                      +++|+++|+  ++|.+++ .+.+++|+++++||++||+||+++++.++.|+|+||||+.++|| +|.++|||.+++||+|
T Consensus       117 ~~~i~~~L~--v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G  194 (215)
T TIGR00323       117 EELISDVLG--VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKG  194 (215)
T ss_pred             HHHHHHhcC--CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCE
Confidence            999999885  5777777 89999999999999999999999999999999999999999999 5999999999999999


Q ss_pred             EeeCCCCCHHHHHHHhhhcCc
Q psy3572         159 GLVHPHTSPQDQDELSSLLQI  179 (245)
Q Consensus       159 ~LV~p~~s~eEl~~l~~~l~V  179 (245)
                      +||||+++++|+++|+++|+.
T Consensus       195 ~lv~~~tt~~El~~ie~~l~~  215 (215)
T TIGR00323       195 AVVGLDTTGPELSIIEEALGL  215 (215)
T ss_pred             EEECCCCCHHHHHHHHHHhCc
Confidence            999999999999999999873

This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.

>PRK04046 translation initiation factor IF-6; Provisional

Probab=100.00  E-value=1.7e-43  Score=313.09  Aligned_cols=175  Identities=23%  Similarity=0.337  Sum_probs=169.5

Q ss_pred             eEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhCCCCceE-EEecccCCcceeEEEEeCceEEEcCCCChhHH
Q psy3572          48 VIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKL-QRVEERLSALGNVIACNDYVALVHPDLDRETE  126 (245)
Q Consensus        48 vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v-~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~  126 (245)
                      +++++|+||+.||+|+++|++++|+|+.++++|+++||+.|  ++++ +..-.+.+++|+|+++||+++++||.++++..
T Consensus         2 i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L--~v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~   79 (222)
T PRK04046          2 IRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETL--GVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEEL   79 (222)
T ss_pred             cEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhc--CceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHH
Confidence            68999999999999999999999999999999999999998  4666 55678999999999999999999999999999


Q ss_pred             HHHHhhhCCceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEE
Q psy3572         127 EILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFC  206 (245)
Q Consensus       127 e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lv  206 (245)
                      +.|+|.|||+|+++++ +++++|+++++||+|+|+||.++++|++.|++.|||++.++|+ +|.+++||+++||||||+|
T Consensus        80 ~~l~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv  157 (222)
T PRK04046         80 ELLKEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLV  157 (222)
T ss_pred             HHHHHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEE
Confidence            9999999999999999 9999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhCCCC
Q psy3572         207 GFDTTSTEISVIESVFKLNE  226 (245)
Q Consensus       207 g~~tT~~Ei~~Ie~~l~v~~  226 (245)
                      ||++|++|+++||++||++.
T Consensus       158 ~p~~t~~ei~~i~~~l~v~~  177 (222)
T PRK04046        158 HPDATDEELKFLEDLFKVEV  177 (222)
T ss_pred             CCCCCHHHHHHHHHHhCCce
Confidence            99999999999999999985

>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional

Probab=100.00  E-value=3.3e-32  Score=244.07  Aligned_cols=127  Identities=16%  Similarity=0.242  Sum_probs=123.9

Q ss_pred             eCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhh
Q psy3572           8 ENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNS   87 (245)
Q Consensus         8 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~   87 (245)
                      ..-+.||+|+++||+|||+||++++++.+.|+++|+  ||+++++|+|+++||++|+|                      
T Consensus        99 ~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~--VeVi~~tIag~~lVGs~~v~----------------------  154 (247)
T PTZ00136         99 ERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLG--VEVFRTTIAGNVLVGTYCVF----------------------  154 (247)
T ss_pred             CccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCCceEEEEEEE----------------------
Confidence            345899999999999999999999999999999999  99999999999999999999                      


Q ss_pred             CCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEec-CceeeeeEEEEcCCeEeeCCCCC
Q psy3572          88 LPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVS-SNVLVGSYCALTNQGGLVHPHTS  166 (245)
Q Consensus        88 l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~LV~p~~s  166 (245)
                                             ||++|||||+++++..+.|+|+||||++++||+ |+++|||.+++||+|+++||+++
T Consensus       155 -----------------------Nn~G~LVhP~~s~ee~~~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT  211 (247)
T PTZ00136        155 -----------------------TNQGGLVHPKTSVQEMDELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTT  211 (247)
T ss_pred             -----------------------eCcEEEECCCCCHHHHHHHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCC
Confidence                                   999999999999999999999999999999995 99999999999999999999999


Q ss_pred             HHHHHHHhhhcCcce
Q psy3572         167 PQDQDELSSLLQIPL  181 (245)
Q Consensus       167 ~eEl~~l~~~l~V~v  181 (245)
                      ++|+++|+++|+++.
T Consensus       212 ~~El~~Ie~~l~v~~  226 (247)
T PTZ00136        212 ATEISVIERIFKLRR  226 (247)
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999999987

>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues

Probab=99.97  E-value=4.2e-31  Score=230.58  Aligned_cols=127  Identities=25%  Similarity=0.419  Sum_probs=108.8

Q ss_pred             ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe------------------
Q psy3572          99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL------------------  160 (245)
Q Consensus        99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L------------------  160 (245)
                      ...+.+|+|+++||+|||+||+++++..+.|++.|+||+++++|+|+++||+|+++|+||+|                  
T Consensus         6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~   85 (199)
T PF01912_consen    6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP   85 (199)
T ss_dssp             TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred             eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence            47899999999999999999999999999999999999999999999999999999777777                  


Q ss_pred             --------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHH
Q psy3572         161 --------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTE  214 (245)
Q Consensus       161 --------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~E  214 (245)
                                                +||+.++++.+.|+++|+|++.++|+ +|.+.|||..++||+|++|||++|++|
T Consensus        86 ~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~ti-a~~~~VGs~~v~tn~G~LvhP~~s~eE  164 (199)
T PF01912_consen   86 DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTI-AGIKTVGSAAVATNKGGLVHPDASEEE  164 (199)
T ss_dssp             TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--B-TTBS-CCCSEEE-SSEEEE-TT--HHH
T ss_pred             CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEe-cCcccceeeEEEeCcEEEECCCCCHHH
Confidence                                      88888888888889999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHhCCCC
Q psy3572         215 ISVIESVFKLNE  226 (245)
Q Consensus       215 i~~Ie~~l~v~~  226 (245)
                      ++++|++|+++.
T Consensus       165 l~~l~~~l~v~~  176 (199)
T PF01912_consen  165 LEELEELLGVPV  176 (199)
T ss_dssp             HHHHHHHHTSSE
T ss_pred             HHHHHHHhCCce
Confidence            999999999986

The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.

>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2e-29  Score=220.90  Aligned_cols=127  Identities=26%  Similarity=0.435  Sum_probs=122.8

Q ss_pred             ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe------------------
Q psy3572          99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL------------------  160 (245)
Q Consensus        99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L------------------  160 (245)
                      ++.+.||.|+.++|+||++||+.+++.++.|+++|+|||++++|+|+++||+++++|+||+|                  
T Consensus         9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~   88 (222)
T COG1976           9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG   88 (222)
T ss_pred             cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence            67899999999999999999999999999999999999999999999999999999666666                  


Q ss_pred             -------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHH
Q psy3572         161 -------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEI  215 (245)
Q Consensus       161 -------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei  215 (245)
                                               +||+.+++..|.|+++|+|++.+||+ +|.+.|||..++|+||+||||++|++|+
T Consensus        89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El  167 (222)
T COG1976          89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL  167 (222)
T ss_pred             ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence                                     99999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q psy3572         216 SVIESVFKLNE  226 (245)
Q Consensus       216 ~~Ie~~l~v~~  226 (245)
                      +++++.|||+.
T Consensus       168 e~Lse~f~V~v  178 (222)
T COG1976         168 EELSELFGVPV  178 (222)
T ss_pred             HHHHHHhCeeE
Confidence            99999999986

>KOG3185|consensus

Probab=99.77  E-value=1.3e-18  Score=151.48  Aligned_cols=128  Identities=19%  Similarity=0.265  Sum_probs=124.9

Q ss_pred             ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhC--CceEEEEecCceeeeeEEEEcCCeEeeCCCCCHHHHHHHhhh
Q psy3572          99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSL  176 (245)
Q Consensus        99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LV~p~~s~eEl~~l~~~  176 (245)
                      ++++.+|.|.-.++.||+|.-.-++.....++..|+  +|++.++|+|++++|++|+||-+|+|||..++|+|++.|++.
T Consensus         8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS   87 (245)
T KOG3185|consen    8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS   87 (245)
T ss_pred             cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence            677999999999999999999999999999999999  999999999999999999999999999999999999999999


Q ss_pred             cCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3572         177 LQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  226 (245)
Q Consensus       177 l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~  226 (245)
                      |.-++..-++-.-..++|+.+.|||+-|+|||+...+.-+.|.|+|++++
T Consensus        88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeV  137 (245)
T KOG3185|consen   88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEV  137 (245)
T ss_pred             CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheee
Confidence            99999999999999999999999999999999999999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
3j2i_B	245	Structure Of Late Pre-60s Ribosomal Subunits With N		1e-110
1g62_A	224	Crystal Structure Of S.Cerevisiae Eif6 Length = 224		1e-104
4a18_J	248	T.Thermophila 60s Ribosomal Subunit In Complex With		6e-97
1g61_A	228	Crystal Structure Of M.Jannaschii Eif6 Length = 228		8e-25
4adx_I	222	The Cryo-Em Structure Of The Archaeal 50s Ribosomal		9e-24

>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear Export Factor Arx1 Bound At The Peptide Exit Tunnel Length = 245

Iteration: 1
 Score =  392 bits (1007), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 178/243 (73%), Positives = 215/243 (88%)
Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           +DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           LVAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L +AQP +I+ ++R +L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRLQDAQPESISGNLRDTL 240
Query: 241 IDS 243
           I++
Sbjct: 241 IET 243

>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6 Length = 224

Iteration: 1
 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 171/224 (76%), Positives = 200/224 (89%)
Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60
Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           +DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           LVAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>pdb|4A18|J Chain J, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 248

Iteration: 1
 Score =  350 bits (897), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 157/241 (65%), Positives = 203/241 (84%)
Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+N++GVF KLT++YCLV++G SENFYSVFE+EL   IPVIH S+ G RI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63
Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R++ GN++GL+VPN   D EL++IRNSLPD+V+++R+EE+LSALGN +  NDYVAL+HPD
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRE+EEI+ADTL VEVFR T+++NVLVG+YC + N+GGLVHP  S ++ DEL++LLQIP
Sbjct: 124 LDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIP 183
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           L AGT+NRGS+VIGAG+VVNDWAAFCG DTTSTEISV+E++FKLNE +   +   MR   
Sbjct: 184 LCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243
Query: 241 I 241
           +
Sbjct: 244 V 244

>pdb|1G61|A Chain A, Crystal Structure Of M.Jannaschii Eif6 Length = 228

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 7/228 (3%)
Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M +R  F     +GV +  T    L+ I   ++  +   +E+ ET   +  ++ G  ++G
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEV-SEVLET-KCLQTNIGGSSLVG 60
Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDS---VKLQRVEERLSALGNVIACNDYVALV 117
            +SV N++GL++P    D EL  I+N L ++   + ++ ++ + +ALGN+I  ND  AL+
Sbjct: 61  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 120
Query: 118 HPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLL 177
            P+L ++ ++ + D+LNVEV   T++    VGS   +TN+G L HP     + + L SL 
Sbjct: 121 SPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF 179
Query: 178 QIPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           ++  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 180 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

>pdb|4ADX|I Chain I, The Cryo-Em Structure Of The Archaeal 50s Ribosomal Subunit In Complex With Initiation Factor 6 Length = 222

Iteration: 1
 Score =  106 bits (265), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 5/227 (2%)
Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M  R+    N  +GV+  +T+S  L+     E F  V    L   + V+  S++G  + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREAL--EVEVLKVSISGSSLNG 58
Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
            ++VGN +G +V N   D E+  +  +    V+  R+ ER +A+GN++  ND  A+  P 
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAA---GVEAVRIPERFTAVGNLVLANDNGAVASPL 115
Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           L  +  +++ D L V+V   T++   +VGS  A TN+G L++P  S ++   +   L + 
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVE 175
Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEA 227
              GTVN G  +IGA  V N      G +TT  E++ IE      E 
Sbjct: 176 ADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	1e-112
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	1e-105
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	8e-99
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	1e-96
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J Length = 248

 Score =  322 bits (827), Expect = e-112
 Identities = 157/244 (64%), Positives = 205/244 (84%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+N++GVF KLT++YCLV++G SENFYSVFE+EL   IPVIH S+ G RI+G
Sbjct: 4   MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVG 63

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           R++ GN++GL+VPN   D EL++IRNSLPD+V+++R+EE+LSALGN +  NDYVAL+HPD
Sbjct: 64  RVTCGNKNGLLVPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPD 123

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           LDRE+EEI+ADTL VEVFR T+++NVLVG+YC + N+GGLVHP  S ++ DEL++LLQIP
Sbjct: 124 LDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELDELANLLQIP 183

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL 240
           L AGT+NRGS+VIGAG+VVNDWAAFCG DTTSTEISV+E++FKLNE +   +   MR   
Sbjct: 184 LCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF 243

Query: 241 IDSI 244
           + ++
Sbjct: 244 VMNL 247

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B Length = 224

 Score =  303 bits (776), Expect = e-105
 Identities = 171/224 (76%), Positives = 200/224 (89%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           +DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           LVAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 222

 Score =  286 bits (733), Expect = 8e-99
 Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 5/227 (2%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M  R+    N  +GV+  +T+S  L+     E F  V    L   + V+  S++G  + G
Sbjct: 1   MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNG 58

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
            ++VGN +G +V N   D E+  +  +  +     R+ ER +A+GN++  ND  A+  P 
Sbjct: 59  ALAVGNSNGFVVSNQAMDREIDALAAAGVE---AVRIPERFTAVGNLVLANDNGAVASPL 115

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           L  +  +++ D L V+V   T++   +VGS  A TN+G L++P  S ++   +   L + 
Sbjct: 116 LSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVE 175

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEA 227
              GTVN G  +IGA  V N      G +TT  E++ IE      E 
Sbjct: 176 ADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLEG 222

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1 Length = 228

 Score =  281 bits (720), Expect = 1e-96
 Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M +R  F     +GV +  T    L+ I   ++  +     L      +  ++ G  ++G
Sbjct: 3   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPD---SVKLQRVEERLSALGNVIACNDYVALV 117
            +SV N++GL++P    D EL  I+N L +    + ++ ++ + +ALGN+I  ND  AL+
Sbjct: 61  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 120

Query: 118 HPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLL 177
            P+L    ++I  D+LNVEV   T++    VGS   +TN+G L HP     + + L SL 
Sbjct: 121 SPELKDFKKDI-EDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF 179

Query: 178 QIPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           ++  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 180 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 44/135 (32%)

Query: 55  GCRIIGRMSVGNRHGLIVPNATTDTELQHIRN-SLPDSVKLQRVEERLSALGNVIACNDY 113
            C+I           L+    TT       R   + D +                     
Sbjct: 265 SCKI-----------LL----TT-------RFKQVTDFLSAATTTH-------------- 288

Query: 114 VALVHPDL---DRETEEILADTLNVEVF---RQTVSSNVLVGSYCALTNQGGLVHPHTSP 167
           ++L H  +     E + +L   L+       R+ +++N    S  A + + GL       
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 168 Q-DQDELSSLLQIPL 181
             + D+L+++++  L
Sbjct: 349 HVNCDKLTTIIESSL 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
4adx_I	222	AIF6; ribosome, protein synthesis; 6.60A {Methanot	100.0
1g61_A	228	EIF-6, translation initiation factor 6; alpha-beta	100.0
1g62_A	224	Ribosome anti-association factor EIF6; alpha-beta	99.97
4a18_J	248	EIF6, translation initiation factor EIF-6, putativ	99.95

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=100.00  E-value=3.9e-86  Score=590.69  Aligned_cols=244  Identities=64%  Similarity=1.107  Sum_probs=224.3

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|
T Consensus         4 M~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   83 (248)
T 4a18_J            4 MARRCQFENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNE   83 (248)
T ss_dssp             CEEEECBTTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHH
T ss_pred             ceEEEeecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||++||++++|+++++|+||+|||++|||++||+||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus        84 l~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~L  163 (248)
T 4a18_J           84 LRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGL  163 (248)
T ss_dssp             HHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEE
T ss_pred             HHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCCCCCcchHHHHHHhh
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNEAQPSAITTSMRASL  240 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~~~~~~~~~~~~~~~  240 (245)
                      |||.++++|+++|+++|+||+..||+|+|+++||+|++||||||+|||+||++|+++||++||++++++.++..+||++|
T Consensus       164 Vhp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~  243 (248)
T 4a18_J          164 VHPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDF  243 (248)
T ss_dssp             ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHHTTCC---------------
T ss_pred             ECCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999977888999999999


Q ss_pred             hhhh
Q psy3572         241 IDSI  244 (245)
Q Consensus       241 ~~~~  244 (245)
                      ||++
T Consensus       244 ~~~~  247 (248)
T 4a18_J          244 VMNL  247 (248)
T ss_dssp             ----
T ss_pred             Hhhc
Confidence            9986

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=100.00  E-value=1.4e-81  Score=554.65  Aligned_cols=224  Identities=76%  Similarity=1.214  Sum_probs=222.9

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||||+++||+|||+|++.++++++.|+++|++|+|+++|+|+||++||+|++||+||+|||++++|+|
T Consensus         1 m~~r~~~~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (224)
T 1g62_A            1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CceEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||++||++++|+++++|++|+|||++|||++||+||++++++++.|+|+|||||++++|||+++|||++++||+|+|
T Consensus        81 l~~l~~~l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~L  160 (224)
T 1g62_A           81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL  160 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred             HHHHHhhCCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL  224 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v  224 (245)
                      |||+++++|+++|+++|+||+.+||+|+|+++||||++|||||++|||+||++|+++||++|++
T Consensus       161 VhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~f~v  224 (224)
T 1g62_A          161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999999986

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=6.7e-72  Score=493.01  Aligned_cols=221  Identities=31%  Similarity=0.516  Sum_probs=218.1

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus         1 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e   78 (222)
T 4adx_I            1 MIRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDRE   78 (222)
T ss_pred             CcEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||+   ++++|.++++|++|+||+++|||++|||||++++++++.|+|+|||+|++.+|++..+||+++++||+|+|
T Consensus        79 ~~~l~~---~~v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~l  155 (222)
T 4adx_I           79 IDALAA---AGVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGAL  155 (222)
T ss_pred             HHHHHh---cCCeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEE
Confidence            999998   37999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCCCC
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKLNE  226 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v~~  226 (245)
                      |||+++++|+++|+++|+||+.+||+|+|+++||||++|||||++|||+||++|+++||++||+.+
T Consensus       156 VhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~f~~~~  221 (222)
T 4adx_I          156 LNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE  221 (222)
T ss_pred             ECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999865

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=4.7e-71  Score=489.22  Aligned_cols=221  Identities=31%  Similarity=0.486  Sum_probs=218.8

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|||+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||+|||+.++|+|
T Consensus         3 m~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e   80 (228)
T 1g61_A            3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   80 (228)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             ceeEEEEcCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHH
Confidence            8899999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhC---CCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCC
Q psy3572          81 LQHIRNSL---PDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQ  157 (245)
Q Consensus        81 l~~l~~~l---~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~  157 (245)
                      +++||++|   |++++|+++++|++|+||+++|||++||+||++ ++..+.|+|+|+|+|++.+|++..++|++++++|+
T Consensus        81 ~~~i~~~L~~~~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~  159 (228)
T 1g61_A           81 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK  159 (228)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred             HHHHHHHhhccCCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceEEEEeCCccceeeEEEEecc
Confidence            99999998   789999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             eEeeCCCCCHHHHHHHhhhcCcc-eeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572         158 GGLVHPHTSPQDQDELSSLLQIP-LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL  224 (245)
Q Consensus       158 G~LV~p~~s~eEl~~l~~~l~V~-v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v  224 (245)
                      |+||||+++++|+++|+++|+|| +.+||+|+|+++||||++|||||++|||+||++|+++||++||+
T Consensus       160 G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          160 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL  227 (228)
T ss_dssp             EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             eEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence            99999999999999999999999 99999999999999999999999999999999999999999997

>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=1.2e-39  Score=287.31  Aligned_cols=172  Identities=20%  Similarity=0.285  Sum_probs=162.6

Q ss_pred             ceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHH
Q psy3572           2 AVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTEL   81 (245)
Q Consensus         2 ~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El   81 (245)
                      +.|++|+|+++||+|++.|++++|||++++++..+.|++ ++  +++.+++ ++++.+|.|+++|+||+|||+.++++|+
T Consensus        46 ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~-~~--v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~  121 (222)
T 4adx_I           46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAA-AG--VEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDAL  121 (222)
T ss_pred             EEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHh-cC--CeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHH
Confidence            378999999999999999999999999999999999999 57  9999999 9999999999999999999999999999


Q ss_pred             HHHHhhCCCCceEEEec-ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEec-CceeeeeEEEEcCCeE
Q psy3572          82 QHIRNSLPDSVKLQRVE-ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVS-SNVLVGSYCALTNQGG  159 (245)
Q Consensus        82 ~~l~~~l~~~v~v~~l~-~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIa-g~~lVGs~~v~Nn~G~  159 (245)
                      +.|++.|+  ++|.+.. .+++++||++++||++|||||+++++..+.|+|+||||+.++|++ |+++|||.+++||+|+
T Consensus       122 e~I~d~L~--VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~  199 (222)
T 4adx_I          122 QVIGDVLE--VDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVANSNGV  199 (222)
T ss_pred             HHHHHhhC--ccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHHHHHHHhCCCEEEeeecCCCCceeEEEEEeCCEE
Confidence            99999874  5554432 469999999999999999999999999999999999999999997 9999999999999999


Q ss_pred             eeCCCCCHHHHHHHhhhcCc
Q psy3572         160 LVHPHTSPQDQDELSSLLQI  179 (245)
Q Consensus       160 LV~p~~s~eEl~~l~~~l~V  179 (245)
                      ++||++++.|+++|+++|+.
T Consensus       200 lvg~~TT~~El~~ie~~f~~  219 (222)
T 4adx_I          200 LVGEETTGPELARIEEALGF  219 (222)
T ss_pred             EECCCCCHHHHHHHHHHhcc
Confidence            99999999999999999984

>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1

Probab=100.00  E-value=7.2e-37  Score=270.61  Aligned_cols=172  Identities=17%  Similarity=0.219  Sum_probs=158.4

Q ss_pred             eeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhc---CC--CceEEEeeccceeeeeEEeecCCeEEeCCCCC
Q psy3572           3 VRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELA---ET--IPVIHASLAGCRIIGRMSVGNRHGLIVPNATT   77 (245)
Q Consensus         3 ~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~---~~--v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~   77 (245)
                      .|.+|+|+++||+|++.|++++|||++.+++.++.|++.|+   +.  |+++++   +++.+|.++++|+||+|||+-. 
T Consensus        49 v~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~---~~~alGnli~~Nd~galV~~el-  124 (228)
T 1g61_A           49 LQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPEL-  124 (228)
T ss_dssp             EECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGG-
T ss_pred             EEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcC---CCcceEEEEEecCccEEeCHHH-
Confidence            58899999999999999999999999999999999999994   22  456664   9999999999999999999966 


Q ss_pred             HHHHHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCc-eEEEEec-CceeeeeEEEEc
Q psy3572          78 DTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVE-VFRQTVS-SNVLVGSYCALT  155 (245)
Q Consensus        78 d~El~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVe-V~~~tIa-g~~lVGs~~v~N  155 (245)
                      ++..+.|++.|+.++.++++.++.++.||.+++| ++|||||+++++..+.|+|+|||| +.++|++ |+++|||.+++|
T Consensus       125 ~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN-~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaN  203 (228)
T 1g61_A          125 KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTN-KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIAN  203 (228)
T ss_dssp             GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECS-SEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEEC
T ss_pred             HHHHHHHHHhcCCceEEEEeCCccceeeEEEEec-ceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEE
Confidence            5555666777776777788999999999999999 999999999999999999999999 9999999 999999999999


Q ss_pred             CCeEeeCCCCCHHHHHHHhhhcCc
Q psy3572         156 NQGGLVHPHTSPQDQDELSSLLQI  179 (245)
Q Consensus       156 n~G~LV~p~~s~eEl~~l~~~l~V  179 (245)
                      |+|+++||+++++|+++|+++|++
T Consensus       204 n~G~lvg~~TT~~El~~Ie~~f~v  227 (228)
T 1g61_A          204 SKGAVVGGDTTGPELLIIEDALGL  227 (228)
T ss_dssp             SSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             CCEEEECCCCCHHHHHHHHHHhcc
Confidence            999999999999999999999986

>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B

Probab=99.97  E-value=8.1e-32  Score=237.58  Aligned_cols=124  Identities=17%  Similarity=0.229  Sum_probs=121.4

Q ss_pred             CCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHHHHHHHhhC
Q psy3572           9 NNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTELQHIRNSL   88 (245)
Q Consensus         9 gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l   88 (245)
                      .-++||+|+++||+||||||++++++.+.|+++|+  ||+++++|+|+++||++++||+                     
T Consensus       100 ~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~--VeV~~~tIag~~lVGs~~v~nn---------------------  156 (224)
T 1g62_A          100 RLSALGNVICCNDYVALVHPDIDRETEELISDVLG--VEVFRQTISGNILVGSYCSLSN---------------------  156 (224)
T ss_dssp             CSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHT--SEEEECCBTTBSCGGGSEEECS---------------------
T ss_pred             cCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhC--CcEEEEEecCcceEEEEEEEeC---------------------
Confidence            45899999999999999999999999999999999  9999999999999999999995                     


Q ss_pred             CCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEe-cCceeeeeEEEEcCCeEeeCCCCCH
Q psy3572          89 PDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTV-SSNVLVGSYCALTNQGGLVHPHTSP  167 (245)
Q Consensus        89 ~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LV~p~~s~  167 (245)
                                              ++|||||+++++..+.|+|+||||+.++|| +|+++|||.+++||+|+|+||++++
T Consensus       157 ------------------------~G~LVhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~  212 (224)
T 1g62_A          157 ------------------------QGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTA  212 (224)
T ss_dssp             ------------------------SCEEECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCH
T ss_pred             ------------------------cEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCH
Confidence                                    999999999999999999999999999999 9999999999999999999999999


Q ss_pred             HHHHHHhhhcCc
Q psy3572         168 QDQDELSSLLQI  179 (245)
Q Consensus       168 eEl~~l~~~l~V  179 (245)
                      +|+++|+++|++
T Consensus       213 ~El~~Ie~~f~v  224 (224)
T 1g62_A          213 PELSVIESIFRL  224 (224)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCc
Confidence            999999999986

>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J

Probab=99.95  E-value=1.5e-28  Score=219.53  Aligned_cols=127  Identities=14%  Similarity=0.261  Sum_probs=122.9

Q ss_pred             ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhC--CceEEEEecCceeeeeEEEEcCCeEe----------------
Q psy3572          99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGL----------------  160 (245)
Q Consensus        99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~L----------------  160 (245)
                      ++.+.+|+|+.+||+|||+||+.+++..+.+++.|+  +|+++++|+|+++||++++||+||+|                
T Consensus        11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~   90 (248)
T 4a18_J           11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS   90 (248)
T ss_dssp             TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred             cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence            678999999999999999999999999999999999  99999999999999999999888888                


Q ss_pred             -----------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCC
Q psy3572         161 -----------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTT  211 (245)
Q Consensus       161 -----------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT  211 (245)
                                                   |||+++++..+.|++.|+|++.++|+ +|++.||+..++||+|++|||.++
T Consensus        91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tI-ags~lVGs~~v~Nn~G~LVhp~~s  169 (248)
T 4a18_J           91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTI-ANNVLVGTYCVINNRGGLVHPLAS  169 (248)
T ss_dssp             SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCB-TTBSCHHHHEEECSSCEEECTTCC
T ss_pred             CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEc-CCcceeEEEEEEeCCeEEECCCCC
Confidence                                         88999999889999999999999998 999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q psy3572         212 STEISVIESVFKLNE  226 (245)
Q Consensus       212 ~~Ei~~Ie~~l~v~~  226 (245)
                      ++|+++|+++|+++.
T Consensus       170 ~eEl~~L~~~l~V~v  184 (248)
T 4a18_J          170 VEELDELANLLQIPL  184 (248)
T ss_dssp             HHHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHHhCCce
Confidence            999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1g62a_	224	d.126.1.1 (A:) Ribosome anti-association factor eI	1e-116
d1g61a_	225	d.126.1.1 (A:) Ribosome anti-association factor eI	1e-108

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  329 bits (846), Expect = e-116
 Identities = 171/224 (76%), Positives = 200/224 (89%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           MA R QFEN+NE+GVFSKLTN+YCLVA+GGSENFYS FEAEL + IP++H ++AG RIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPD 120
           RM+ GNR GL+VP  TTD ELQH+RNSLPDSVK+QRVEERLSALGNVI CNDYVALVHPD
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLLQIP 180
           +DRETEE+++D L VEVFRQT+S N+LVGSYC+L+NQGGLVHP TS QDQ+ELSSLLQ+P
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVP 180

Query: 181 LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           LVAGTVNRGS V+GAGMVVND+ A  G DTT+ E+SVIES+F+L
Sbjct: 181 LVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  310 bits (796), Expect = e-108
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIG 60
           M +R  F     +GV +  T    L+ I   ++  +     L      +  ++ G  ++G
Sbjct: 1   MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVG 58

Query: 61  RMSVGNRHGLIVPNATTDTELQHIRNSLPDS---VKLQRVEERLSALGNVIACNDYVALV 117
            +SV N++GL++P    D EL  I+N L ++   + ++ ++ + +ALGN+I  ND  AL+
Sbjct: 59  SLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALI 118

Query: 118 HPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGLVHPHTSPQDQDELSSLL 177
            P+L ++ ++ + D+LNVEV   T++    VGS   +TN+G L HP     + + L SL 
Sbjct: 119 SPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLF 177

Query: 178 QIPLVA-GTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL 224
           ++  +  GT N+G+  +GA ++ N   A  G DTT  E+ +IE    L
Sbjct: 178 KVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	100.0
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	100.0
d1g62a_	224	Ribosome anti-association factor eIF6 (aIF6) {Bake	99.96
d1g61a_	225	Ribosome anti-association factor eIF6 (aIF6) {Arch	99.95

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-81  Score=552.78  Aligned_cols=224  Identities=76%  Similarity=1.214  Sum_probs=222.5

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |++|++|+|||+||||+++||+|||+|++.++++++.|+++|+.++|+++|+|+||++||+|++||+||+|||++++|+|
T Consensus         1 M~~r~~f~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~E   80 (224)
T d1g62a_           1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQE   80 (224)
T ss_dssp             CEEEECBTTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHH
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe
Q psy3572          81 LQHIRNSLPDSVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL  160 (245)
Q Consensus        81 l~~l~~~l~~~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L  160 (245)
                      +++||+++|++++|+++++|+||+||+|+|||++|++||+++++++|+|+|+|||||+|++|||..+|||++++||+|+|
T Consensus        81 l~~L~~~l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~tiag~~~VGs~~v~tn~G~L  160 (224)
T d1g62a_          81 LQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGL  160 (224)
T ss_dssp             HHHHHHHSCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEE
T ss_pred             HHHHHhhCCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEEecCccceeeEEEEcCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572         161 VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL  224 (245)
Q Consensus       161 V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v  224 (245)
                      +||+++++|+++|+++|+||+..||||+|+++||+|++|||||++||.+||++||.|||++|++
T Consensus       161 vhP~~t~~E~~~l~~~l~V~~~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~~~~l  224 (224)
T d1g62a_         161 VHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL  224 (224)
T ss_dssp             ECTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred             ecCCCCHHHHHHHHHHhCCCcccceeeCCCCCceeEEEEcCceEEEcCCCCcHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999985

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.1e-79  Score=540.25  Aligned_cols=221  Identities=31%  Similarity=0.496  Sum_probs=216.6

Q ss_pred             CceeeeeeCCCceeeEEEecCcEEEEecCCChhHHHHHHHHhcCCCceEEEeeccceeeeeEEeecCCeEEeCCCCCHHH
Q psy3572           1 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELAETIPVIHASLAGCRIIGRMSVGNRHGLIVPNATTDTE   80 (245)
Q Consensus         1 M~~r~~~~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~E   80 (245)
                      |+.|++|+|+|+||||+++||+|||+|++.++++++.|+++|+  +|+++|+|+||++||+|++||+||||||++++|+|
T Consensus         1 Mi~r~~~~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~--v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~E   78 (225)
T d1g61a_           1 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEE   78 (225)
T ss_dssp             CEEEECBTTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHH
T ss_pred             CcEEEEecCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHH
Confidence            9999999999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHhhCCC---CceEEEecccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCC
Q psy3572          81 LQHIRNSLPD---SVKLQRVEERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQ  157 (245)
Q Consensus        81 l~~l~~~l~~---~v~v~~l~~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~  157 (245)
                      +++||++||+   +++|+++++|+||+||+|+|||++|+|||++ +++.|.|+|+|||||+|++|||..+|||++++||+
T Consensus        79 l~~l~~~l~~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l-~e~~e~I~dvL~Vev~r~~iag~~~VGs~~v~tn~  157 (225)
T d1g61a_          79 LDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNK  157 (225)
T ss_dssp             HHHHHHHHHHTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSS
T ss_pred             HHHHHhhcccccCCceEEEeCCcccccccEEEEcCcceEecccc-chHHHHHHHhhCceEEEEEeCCcccceeEEEEecc
Confidence            9999999976   4999999999999999999999999999999 57899999999999999999999999999999999


Q ss_pred             eEeeCCCCCHHHHHHHhhhcCcc-eeeeeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHHhCC
Q psy3572         158 GGLVHPHTSPQDQDELSSLLQIP-LVAGTVNRGSEVIGAGMVVNDWAAFCGFDTTSTEISVIESVFKL  224 (245)
Q Consensus       158 G~LV~p~~s~eEl~~l~~~l~V~-v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT~~Ei~~Ie~~l~v  224 (245)
                      |+|+||+++++|+++|+++|+|| +..||||+|+++||+|++|||||++||.+||++||.|||++||+
T Consensus       158 G~LvhP~~s~~E~~~l~~~l~V~~v~~GTVN~Gs~~VgsGlvaN~~g~~vG~~TTg~El~~Ie~a~~l  225 (225)
T d1g61a_         158 GCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL  225 (225)
T ss_dssp             EEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred             ceEECCCCCHHHHHHHHHHhCCCcccccceeCCCCCceeEEEEcCceEEEcCCCchHHHHHHHHHhCC
Confidence            99999999999999999999999 56899999999999999999999999999999999999999985

>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-29  Score=221.03  Aligned_cols=127  Identities=16%  Similarity=0.266  Sum_probs=122.5

Q ss_pred             ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhC--CceEEEEecCceeeeeEEEEcCCeEe----------------
Q psy3572          99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLN--VEVFRQTVSSNVLVGSYCALTNQGGL----------------  160 (245)
Q Consensus        99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~L----------------  160 (245)
                      +..+.+|+|+++||+||++||+.+++..+.+++.|+  +|+++++|+|++++|+++++|+||+|                
T Consensus         8 ~gs~~IGVf~~~t~~~~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~liG~l~~GN~nGllvp~~~td~El~~L~~~   87 (224)
T d1g62a_           8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS   87 (224)
T ss_dssp             TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCCcEEEEEecCceeeeeeeecccCeEEeCCcCCHHHHHHHHhh
Confidence            678999999999999999999999999999999998  99999999999999999999777777                


Q ss_pred             -----------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCCC
Q psy3572         161 -----------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDTT  211 (245)
Q Consensus       161 -----------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~tT  211 (245)
                                                   |||+.+++..+.|+++|||++.++|+ +|.+.|||..++||+|++|||++|
T Consensus        88 l~d~v~V~~l~~~~~AlGN~I~~ND~~alv~p~l~~e~~e~I~dvL~Vev~~~ti-ag~~~VGs~~v~tn~G~LvhP~~t  166 (224)
T d1g62a_          88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTI-SGNILVGSYCSLSNQGGLVHPQTS  166 (224)
T ss_dssp             SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCB-TTBSCGGGSEEECSSCEEECTTCC
T ss_pred             CCCCcEEEEeCCCccccccEEEEcccceEecCCCCHHHHHHHHHHhCceEEEEEe-cCccceeeEEEEcCCceeecCCCC
Confidence                                         99999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q psy3572         212 STEISVIESVFKLNE  226 (245)
Q Consensus       212 ~~Ei~~Ie~~l~v~~  226 (245)
                      .+|+++||++|+++.
T Consensus       167 ~~E~~~l~~~l~V~~  181 (224)
T d1g62a_         167 VQDQEELSSLLQVPL  181 (224)
T ss_dssp             HHHHHHHHHHHTSCE
T ss_pred             HHHHHHHHHHhCCCc
Confidence            999999999999985

>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Pentein, beta/alpha-propeller
superfamily: Pentein
family: Ribosome anti-association factor eIF6 (aIF6)
domain: Ribosome anti-association factor eIF6 (aIF6)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=4.1e-29  Score=218.16  Aligned_cols=125  Identities=18%  Similarity=0.340  Sum_probs=115.8

Q ss_pred             ccCCcceeEEEEeCceEEEcCCCChhHHHHHHhhhCCceEEEEecCceeeeeEEEEcCCeEe------------------
Q psy3572          99 ERLSALGNVIACNDYVALVHPDLDRETEEILADTLNVEVFRQTVSSNVLVGSYCALTNQGGL------------------  160 (245)
Q Consensus        99 ~~~~alGn~i~~ND~~alv~p~l~~~~~e~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~L------------------  160 (245)
                      +..+.+|+|+++||+||++||+++++..+.|++.|++|+++++|+|++++|+++++|+||+|                  
T Consensus         8 ~gs~~IGVy~~~t~~~~lvp~~~~~~~~~~i~~~L~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~   87 (225)
T d1g61a_           8 SGIPTIGVLALTTEEITLLPIFLDKDDVNEVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLK   87 (225)
T ss_dssp             TTBCCHHHHCEECSSEEEECTTCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHH
T ss_pred             cCCCceEEEEEEeCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceeeeEEeccCCeEEeCCcCCHHHHHHHHhhcc
Confidence            67899999999999999999999999999999999999999999999999999999888887                  


Q ss_pred             ------------------------------eCCCCCHHHHHHHhhhcCcceeeeeeecCccceeeEEEEcCceEEEcCCC
Q psy3572         161 ------------------------------VHPHTSPQDQDELSSLLQIPLVAGTVNRGSEVIGAGMVVNDWAAFCGFDT  210 (245)
Q Consensus       161 ------------------------------V~p~~s~eEl~~l~~~l~V~v~~gTvN~G~~~VGsgivaNd~G~lvg~~t  210 (245)
                                                    |||+.+ ++.+.|+++|||++.++++ +|.+.|||..++||+|++|||++
T Consensus        88 ~~~~dv~V~~l~~~~nAlGN~I~~ND~~Alv~p~l~-e~~e~I~dvL~Vev~r~~i-ag~~~VGs~~v~tn~G~LvhP~~  165 (225)
T d1g61a_          88 ENNLDLNVEIIKSKNTALGNLILTNDKGALISPELK-DFKKDIEDSLNVEVEIGTI-AELPTVGSNAVVTNKGCLTHPLV  165 (225)
T ss_dssp             HTTCCCEEEEECCSSCCHHHHEEECSSEEEECGGGG-GGHHHHHHHHCSEEEECCB-TTBSCTTTSEEECSSEEEECTTC
T ss_pred             cccCCceEEEeCCcccccccEEEEcCcceEeccccc-hHHHHHHHhhCceEEEEEe-CCcccceeEEEEeccceEECCCC
Confidence                                          555553 3445567889999999999 99999999999999999999999


Q ss_pred             CHHHHHHHHHHhCCC
Q psy3572         211 TSTEISVIESVFKLN  225 (245)
Q Consensus       211 T~~Ei~~Ie~~l~v~  225 (245)
                      |.+|++.||++|+++
T Consensus       166 s~~E~~~l~~~l~V~  180 (225)
T d1g61a_         166 EDDELEFLKSLFKVE  180 (225)
T ss_dssp             CHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHhCCC
Confidence            999999999999998