Psyllid ID: psy3598

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MATSKDTNRSLLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYLCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEEPEDTSNMVPDSEAIDNPYLRPVKYPQRIKSVK
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHEHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEccccccccHHHccccHccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
matskdtnrSLLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFiiktepiehifdeaddrftlivpkpemlpylclipkdqvfeededniqaspqkkkkptpvkkkskkkkveedeedgeedeaeeeegegneepedtsnmvpdseaidnpylrpvkypqriksvk
Flexible Loop (DISEMBL)
matskdtnrsllKSSVVALLAethkqpvteyEAIREKAATQKRDLARALNKFIiktepiehifdEADDRFTLIVPKPEMLPYLCLIPKDQVFEEDEDniqaspqkkkkptpvkkkskkkkveedeedgeedeaeeeegegneepedtsnmvpdseaidnpylrpvkypqriksvk
Low Complexity Region (SEG)
MATSKDTNRsllkssvvallaETHKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYLCLIPKDQVFEEDEDNIQASPQkkkkptpvkkkskkkkveedeedgeedeaeeeegegneepeDTSNMVPDSEAIDNPYLRPVKYPQRIKSVK
Disordered region (IsUnstruct)
***************VVALLAE*****VTEYEAI*******KRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYLCLIPKDQV************************************************************************************
Disordered Region (DISOPRED)
***********LKSSVVALLAETHKQPVTEYEA************ARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYLCLIPKDQVFEEDEDN**********************************************************IDNPYLRPVKYP*******
Disordered Region (DISEMBL)
**********LLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYLCLIPKDQVFEE*******************************************************MVPDSEAIDNPYLRPVKYPQRIKSVK
Disordered Region (DISPRO)
**********LLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYLCLIPKDQVF***************************************************************AIDNPYLRPVK*********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSKDTNRSLLKSSVVALLAETHKQPVTExxxxxxxxxxxxxxxxxxxxxFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYLCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKxxxxxxxxxxxxxxxxxxxxxGNEEPEDTSNMVPDSEAIDNPYLRPVKYPQRIKSVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q9VWY6	328	Transcription initiation	yes	N/A	0.857	0.457	0.422	2e-21
Q28J24	293	Transcription initiation	yes	N/A	0.731	0.436	0.311	3e-13
Q7ZYA2	293	Transcription initiation	N/A	N/A	0.748	0.447	0.331	6e-13
Q7Z7C8	310	Transcription initiation	yes	N/A	0.748	0.422	0.309	1e-12
A7MAZ4	310	Transcription initiation	yes	N/A	0.777	0.438	0.313	2e-12
Q9EQH4	308	Transcription initiation	yes	N/A	0.788	0.448	0.310	2e-12
Q5ZMS1	244	Transcription initiation	yes	N/A	0.777	0.557	0.32	2e-12
Q6P0T2	308	Transcription initiation	yes	N/A	0.742	0.422	0.319	4e-10

>sp|Q9VWY6|TAF8_DROME Transcription initiation factor TFIID subunit 8 OS=Drosophila melanogaster GN=Taf8 PE=1 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI  KP   PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACKPAFPPY 205

Query: 83  -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K   ++   E +E DG  D+++EE+ E +
Sbjct: 206 AAALNPTDQVFDFEELEYHYLVANRTEDEPSKDDGEEGDSENEEMDG--DKSKEEKPELD 263

Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIKSV 174
            +P   +N  + ++  IDNPYLR    P+R K+ 
Sbjct: 264 IKPNSNTNKAILENPNIDNPYLRAATLPKRSKNC 297

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors.
Drosophila melanogaster (taxid: 7227)

>sp|Q28J24|TAF8_XENTR Transcription initiation factor TFIID subunit 8 OS=Xenopus tropicalis GN=taf8 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 26/154 (16%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           T+++PV +Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct: 154 TYREPVCDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDTSTFPLIAARPLSIPY 213

Query: 83  L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
           L  L+P +   ++ E+   +                    ++D+ D E      +  E  
Sbjct: 214 LNALLPSELELQQVEETDSSE-------------------QDDQTDAENLSMHLQGDEVG 254

Query: 142 EEPEDTSNMVPDS------EAIDNPYLRPVKYPQ 169
            E E++S +  +S        IDNPYLRPVK P+
Sbjct: 255 MEKENSSVLQQNSMKGGEETLIDNPYLRPVKKPK 288

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription.

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZYA2|TAF8_XENLA Transcription initiation factor TFIID subunit 8 OS=Xenopus laevis GN=taf8 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 20/151 (13%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           T+++PV +Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct: 154 TYREPVCDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDTSTFPLIAARPLSIPY 213

Query: 83  L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEA---EEEEG 138
           L  L+P +   ++  D   +S Q  +  T    ++    ++ DE   E++ A   ++   
Sbjct: 214 LNALLPSELELQQ-VDETDSSEQDDQTDT----ENLSLHLQGDEVGMEKENASVLQQNSM 268

Query: 139 EGNEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
           +G EE             IDNPYLRPVK P+
Sbjct: 269 KGGEE-----------TLIDNPYLRPVKKPK 288

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription.

Xenopus laevis (taxid: 8355)

>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens GN=TAF8 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 24/155 (15%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct: 164 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 223

Query: 83  L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEED-----GEEDEAEEE 136
           L  L+P +   ++ E+                  S ++  + D E+       ED   E+
Sbjct: 224 LTALLPSELEMQQMEET----------------DSSEQDEQTDTENLALHISMEDSGAEK 267

Query: 137 EGEG--NEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
           E      + P  + +   +   IDNPYLRPVK P+
Sbjct: 268 ENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKKPK 302

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however, does not seem to play a role in differentiation of myoblasts. Required for the integration of TAF10 in the TAF complex. May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.

Homo sapiens (taxid: 9606)

>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus GN=TAF8 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 14/150 (9%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct: 164 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 223

Query: 83  L-CLIPKDQVFE--EDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGE 139
           L  L+P +   +  E+ D+ +   Q   +  P+        +  D+   E    +E    
Sbjct: 224 LTALLPSELEMQQMEETDSSEQDEQTDTENLPL-------HISPDDSGAE----KENTSV 272

Query: 140 GNEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
             + P  + +   +   IDNPYLRPVK P+
Sbjct: 273 LQQNPSLSGSRNGEESIIDNPYLRPVKKPK 302

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however, does not seem to play a role in differentiation of myoblasts. Required for the integration of TAF10 in the TAF complex. May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.

Bos taurus (taxid: 9913)

>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus GN=Taf8 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 82/148 (55%), Gaps = 10/148 (6%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct: 162 TYREPVSDYQILREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 221

Query: 83  L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
           L  L+P +   ++ E+   +S Q+++  T    ++    +  D+   E++ A   +   +
Sbjct: 222 LTALLPSELEIQQMEET-DSSEQEEQTDT----ENNALHISTDDSGAEKESASVLQQSSS 276

Query: 142 EEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
                      +   IDNPYLRPVK P+
Sbjct: 277 LSGSRNG----EESVIDNPYLRPVKKPK 300

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however does not seem to play a role in differentiation of myoblasts. Required for the integration of TAF10 in the TAF complex (By similarity). May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.

Mus musculus (taxid: 10090)

>sp|Q5ZMS1|TAF8_CHICK Transcription initiation factor TFIID subunit 8 OS=Gallus gallus GN=TAF8 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 14/150 (9%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct: 101 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTVPY 160

Query: 83  L-CLIPKDQVFE--EDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGE 139
           L  L+P +   +  E+ D+ +   Q   +  P+   +     E++     +         
Sbjct: 161 LTALLPSELEMQQMEETDSSEQDDQTDTENLPLHISTDDSGPEKENASVLQQNTSLSGSR 220

Query: 140 GNEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
             EE     NM      IDNPYLRPVK P+
Sbjct: 221 NGEE-----NM------IDNPYLRPVKKPK 239

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription.

Gallus gallus (taxid: 9031)

>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio GN=taf8 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 11/141 (7%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           T ++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  KP  +PY
Sbjct: 166 TFREPVSDYQVVREKAASQRRDVERALTRFMAKTGETQSLFKDDISAFPLIAAKPSPIPY 225

Query: 83  L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
           L  L+P +   +  E+   +S Q  +    +   +    + +D  D   D+  E    G 
Sbjct: 226 LSALLPSELELQSLEET-DSSEQDDQ----MDNDNNTSHIMQD--DSGADKENEVLPPGG 278

Query: 142 EEPEDTSNMVPDSEAIDNPYL 162
             P   +N   +   IDNPYL
Sbjct: 279 VVPSGKAN---EENMIDNPYL 296


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.306    0.127    0.342 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,343,427
Number of Sequences: 539616
Number of extensions: 3458005
Number of successful extensions: 76200
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1718
Number of HSP's successfully gapped in prelim test: 1081
Number of HSP's that attempted gapping in prelim test: 37360
Number of HSP's gapped (non-prelim): 21884
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 57 (26.6 bits)

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
383847987	291	PREDICTED: transcription initiation fact	0.737	0.443	0.5	2e-22
194768102	322	GF19371 [Drosophila ananassae] gi|190623	0.8	0.434	0.420	1e-20
195456724	321	GK17025 [Drosophila willistoni] gi|19417	0.845	0.461	0.434	1e-20
194892272	328	GG19150 [Drosophila erecta] gi|190649280	0.851	0.454	0.431	2e-20
195345371	330	GM22880 [Drosophila sechellia] gi|194134	0.857	0.454	0.428	2e-20
340726384	291	PREDICTED: transcription initiation fact	0.742	0.446	0.449	2e-20
195481241	328	GE17709 [Drosophila yakuba] gi|194189096	0.845	0.451	0.434	3e-20
332022258	294	Transcription initiation factor TFIID su	0.742	0.442	0.442	3e-20
195166878	323	GL14948 [Drosophila persimilis] gi|19410	0.845	0.458	0.421	4e-20
195397547	332	GJ17059 [Drosophila virilis] gi|19414715	0.845	0.445	0.427	1e-19

>gi|383847987|ref|XP_003699634.1| PREDICTED: transcription initiation factor TFIID subunit 8-like [Megachile rotundata]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 94/148 (63%), Gaps = 19/148 (12%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDR-FTLIVPKPEMLP 81
           THKQPVTEYEAIREKAATQKRD+ RAL +FI KT     +F   D+  F LI  KP+   
Sbjct: 140 THKQPVTEYEAIREKAATQKRDIERALTRFIAKTGETHSLFLTDDNSMFPLISCKPQFPS 199

Query: 82  YL-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEG 140
           YL  L+P+DQ+FE D+D        + +P+PVKKK K++ +EE EE G + + E+ E  G
Sbjct: 200 YLSALLPQDQIFEADQDF-------QFEPSPVKKK-KEQDIEETEE-GMKGQNEDSEQNG 250

Query: 141 NEEPEDTSNMVPDSEAIDNPYLRPVKYP 168
               E T+      +AIDNPYLRP K P
Sbjct: 251 ----ETTTQ----QDAIDNPYLRPGKIP 270

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194768102|ref|XP_001966152.1| GF19371 [Drosophila ananassae] gi|190623037|gb|EDV38561.1| GF19371 [Drosophila ananassae]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/164 (42%), Positives = 90/164 (54%), Gaps = 24/164 (14%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI  KP   PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTSETNNLFPTEDNMFPLIACKPAFPPY 205

Query: 83  -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K            EDGEE ++E EE EG+
Sbjct: 206 AAALNPTDQVFDFEELEYHYLVANRTEDVPSK------------EDGEEGDSENEELEGD 253

Query: 142 E----------EPEDTSN-MVPDSEAIDNPYLRPVKYPQRIKSV 174
           +          +P  T+N  + ++  IDNPYLR    P+R K+V
Sbjct: 254 KSKEEKPELEIKPNSTTNKAILENPNIDNPYLRAATLPKRSKTV 297

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195456724|ref|XP_002075259.1| GK17025 [Drosophila willistoni] gi|194171344|gb|EDW86245.1| GK17025 [Drosophila willistoni]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 90/152 (59%), Gaps = 4/152 (2%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI  KP   PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIASKPSFPPY 205

Query: 83  -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K+  +    + D+ED E D+++EE+ E  
Sbjct: 206 AAALNPTDQVFDFEELEYHYLVANRTEDVPSKEDGEDG--DSDQEDLEGDKSKEEKPELE 263

Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIK 172
            +P  T+N  + ++  IDNPYLR    P+R K
Sbjct: 264 IKPNSTTNKAILENPNIDNPYLRAATLPKRSK 295

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194892272|ref|XP_001977631.1| GG19150 [Drosophila erecta] gi|190649280|gb|EDV46558.1| GG19150 [Drosophila erecta]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 4/153 (2%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI  KP   PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACKPAFPPY 205

Query: 83  -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K+  ++   E +E DG  D+++EE+ E  
Sbjct: 206 AAALNPTDQVFDFEELEYHYLVANRTEDVPSKEDGEEGDSENEEMDG--DKSKEEKPELE 263

Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIKS 173
            +P  T+N  + ++  IDNPYLR    P+R K+
Sbjct: 264 IKPNSTTNKAILENPNIDNPYLRAATLPKRSKA 296

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195345371|ref|XP_002039243.1| GM22880 [Drosophila sechellia] gi|194134469|gb|EDW55985.1| GM22880 [Drosophila sechellia]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 91/154 (59%), Gaps = 4/154 (2%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI  KP   PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACKPAFPPY 205

Query: 83  -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K + ++   E +E DG  D+++EE+ E +
Sbjct: 206 AAALNPTDQVFDFEELEYHYLVANRTEDEPSKDEGEEGDSENEEMDG--DKSKEEKPEID 263

Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIKSV 174
            +P   +N  + D+  IDNPYLR    P+R K+ 
Sbjct: 264 IKPNSNTNKAILDNPNIDNPYLRAATLPKRAKNC 297

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726384|ref|XP_003401539.1| PREDICTED: transcription initiation factor TFIID subunit 8-like [Bombus terrestris] gi|350423971|ref|XP_003493649.1| PREDICTED: transcription initiation factor TFIID subunit 8-like [Bombus impatiens]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 91/149 (61%), Gaps = 19/149 (12%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIF-DEADDRFTLIVPKPEMLP 81
           THKQPVTEYEAIREKAATQKRD+ RAL +FI KT     +F  E +  F LI  KP+   
Sbjct: 140 THKQPVTEYEAIREKAATQKRDIERALTRFIAKTGDTHSLFLTEDNSMFPLISCKPQFPS 199

Query: 82  YL-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEG 140
           YL  L+P+DQVFE D+D        + +P+P+KK+ ++++ E +E    ++E  E+ GE 
Sbjct: 200 YLSALLPQDQVFETDQD-------FQFEPSPIKKRKEQEREESEEGMKGQNEDVEQNGET 252

Query: 141 NEEPEDTSNMVPDSEAIDNPYLRPVKYPQ 169
             +           + IDNPYLRP K P+
Sbjct: 253 TTQ----------QDVIDNPYLRPGKIPK 271

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195481241|ref|XP_002101572.1| GE17709 [Drosophila yakuba] gi|194189096|gb|EDX02680.1| GE17709 [Drosophila yakuba]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 90/152 (59%), Gaps = 4/152 (2%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI  KP   PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACKPAFPPY 205

Query: 83  -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K+  ++   E +E DG  D+++EE+ E  
Sbjct: 206 AAALNPTDQVFDFEELEYHYLVANRTEDVPSKEDGEEGDSENEELDG--DKSKEEKPELE 263

Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIK 172
            +P  T+N  + ++  IDNPYLR    P+R K
Sbjct: 264 IKPNSTTNKAILENPNIDNPYLRAATLPKRSK 295

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022258|gb|EGI62573.1| Transcription initiation factor TFIID subunit 8 [Acromyrmex echinatior]

 Score =  103 bits (256), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 81/149 (54%), Gaps = 19/149 (12%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIF-DEADDRFTLIVPKPEMLP 81
           THKQPVTEYEAIREK ATQKRD+ RAL +FI KT     +F  E +  F LI  KP+   
Sbjct: 140 THKQPVTEYEAIREKVATQKRDIERALTRFIAKTGETHSLFLTEDNSMFPLISCKPQFPS 199

Query: 82  YL-CLIPKDQVFEEDED-NIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGE 139
           Y+  L+P+DQ+FE D D    ++P KKKK                E+  E+   EE    
Sbjct: 200 YISALLPQDQIFEPDPDFQFDSNPVKKKK----------------EQQNEDRLTEEGNQT 243

Query: 140 GNEEPEDTSNMVPDSEAIDNPYLRPVKYP 168
            NE  E     +   + IDNPYLRP K P
Sbjct: 244 QNENMEQNGETITQQDVIDNPYLRPGKIP 272

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195166878|ref|XP_002024261.1| GL14948 [Drosophila persimilis] gi|194107634|gb|EDW29677.1| GL14948 [Drosophila persimilis]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 89/152 (58%), Gaps = 4/152 (2%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI   P + PY
Sbjct: 146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACNPSLPPY 205

Query: 83  L-CLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K+   +   + D ED E D+++E++ E  
Sbjct: 206 YAALNPTDQVFDFEELEYHYLVANRTEDAPSKEDGDEG--DSDNEDLEGDKSKEDKQELE 263

Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIK 172
            +P  T+N  + ++  IDNPYLR    P+R K
Sbjct: 264 IKPNSTTNKAILENPNIDNPYLRAATLPKRTK 295

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397547|ref|XP_002057390.1| GJ17059 [Drosophila virilis] gi|194147157|gb|EDW62876.1| GJ17059 [Drosophila virilis]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 91/152 (59%), Gaps = 4/152 (2%)

Query: 23  THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
           THKQPVTEYEAIREKAA+QKRD+ +AL KF+ KT    ++F   D+ F LI  KP    Y
Sbjct: 147 THKQPVTEYEAIREKAASQKRDVEKALTKFLCKTTETNNLFPTEDNMFPLIACKPAFPAY 206

Query: 83  -LCLIPKDQVFEEDEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGN 141
              L P DQVF+ +E         + +  P K++ ++   E +E DG  D+++EE+ E  
Sbjct: 207 AAALNPTDQVFDFEELEYHYLVANRTEDVPSKEEGEEGDSENEELDG--DKSKEEKPELE 264

Query: 142 EEPEDTSN-MVPDSEAIDNPYLRPVKYPQRIK 172
            +P  T+N  + ++  IDNPYLR    P+R K
Sbjct: 265 IKPNSTTNKAILENPNIDNPYLRAATLPKRSK 296

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
FB|FBgn0022724	328	Taf8 "TBP-associated factor 8"	0.422	0.225	0.56	5.6e-21
UNIPROTKB|F1NMN6	239	TAF8 "Transcription initiation	0.428	0.313	0.381	2e-16
UNIPROTKB|Q5ZMS1	244	TAF8 "Transcription initiation	0.428	0.307	0.381	2e-16
ZFIN|ZDB-GENE-040426-1013	308	taf8 "TAF8 RNA polymerase II,	0.445	0.253	0.402	4.4e-16
RGD|1308423	308	Taf8 "TAF8 RNA polymerase II,	0.428	0.243	0.381	7.8e-16
MGI|MGI:1926879	308	Taf8 "TAF8 RNA polymerase II,	0.428	0.243	0.381	1e-15
UNIPROTKB|A7MAZ4	310	TAF8 "Transcription initiation	0.428	0.241	0.381	1e-15
UNIPROTKB|E2RN76	310	TAF8 "Uncharacterized protein"	0.428	0.241	0.381	1e-15
UNIPROTKB|Q7Z7C8	310	TAF8 "Transcription initiation	0.428	0.241	0.381	1e-15

FB|FBgn0022724 Taf8 "TBP-associated factor 8" [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             THKQPVTEYEAIREKAA QKRD+ +AL KF+ KT    ++F   D+ F LI  KP   PY
Sbjct:   146 THKQPVTEYEAIREKAACQKRDIEKALTKFLCKTTETNNLFPTEDNMFPLIACKPAFPPY 205

Query:    83 LCLI-PKDQVFEEDE 96
                + P DQVF+ +E
Sbjct:   206 AAALNPTDQVFDFEE 220

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=IDA

GO:0009987 "cellular process" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005669 "transcription factor TFIID complex" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NMN6 TAF8 "Transcription initiation factor TFIID subunit 8" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 29/76 (38%), Positives = 51/76 (67%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct:    96 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTVPY 155

Query:    83 L-CLIPKDQVFEEDED 97
             L  L+P +   ++ E+
Sbjct:   156 LTALLPSELEMQQMEE 171

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

UNIPROTKB|Q5ZMS1 TAF8 "Transcription initiation factor TFIID subunit 8" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 29/76 (38%), Positives = 51/76 (67%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct:   101 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTVPY 160

Query:    83 L-CLIPKDQVFEEDED 97
             L  L+P +   ++ E+
Sbjct:   161 LTALLPSELEMQQMEE 176

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1013 taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
 Identities = 33/82 (40%), Positives = 52/82 (63%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T ++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  KP  +PY
Sbjct:   166 TFREPVSDYQVVREKAASQRRDVERALTRFMAKTGETQSLFKDDISAFPLIAAKPSPIPY 225

Query:    83 L-CLIPKD---QVFEEDEDNIQ 100
             L  L+P +   Q  EE + + Q
Sbjct:   226 LSALLPSELELQSLEETDSSEQ 247

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

RGD|1308423 Taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
 Identities = 29/76 (38%), Positives = 51/76 (67%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct:   162 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 221

Query:    83 L-CLIPKDQVFEEDED 97
             L  L+P +   ++ E+
Sbjct:   222 LTALLPSELEIQQMEE 237

GO:0001833 "inner cell mass cell proliferation" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0045598 "regulation of fat cell differentiation" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1926879 Taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq" [Mus musculus (taxid:10090)]

 Score = 155 (59.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 29/76 (38%), Positives = 51/76 (67%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct:   162 TYREPVSDYQILREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 221

Query:    83 L-CLIPKDQVFEEDED 97
             L  L+P +   ++ E+
Sbjct:   222 LTALLPSELEIQQMEE 237

GO:0001833 "inner cell mass cell proliferation" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=ISA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=ISO

UNIPROTKB|A7MAZ4 TAF8 "Transcription initiation factor TFIID subunit 8" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 29/76 (38%), Positives = 51/76 (67%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct:   164 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 223

Query:    83 L-CLIPKDQVFEEDED 97
             L  L+P +   ++ E+
Sbjct:   224 LTALLPSELEMQQMEE 239

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

UNIPROTKB|E2RN76 TAF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 29/76 (38%), Positives = 51/76 (67%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct:   164 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 223

Query:    83 L-CLIPKDQVFEEDED 97
             L  L+P +   ++ E+
Sbjct:   224 LTALLPSELEMQQMEE 239

GO:0046982 "protein heterodimerization activity" evidence=IEA

UNIPROTKB|Q7Z7C8 TAF8 "Transcription initiation factor TFIID subunit 8" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
 Identities = 29/76 (38%), Positives = 51/76 (67%)

Query:    23 THKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPY 82
             T+++PV++Y+ +REKAA+Q+RD+ RAL +F+ KT   + +F +    F LI  +P  +PY
Sbjct:   164 TYREPVSDYQVLREKAASQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPY 223

Query:    83 L-CLIPKDQVFEEDED 97
             L  L+P +   ++ E+
Sbjct:   224 LTALLPSELEMQQMEE 239

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0045598 "regulation of fat cell differentiation" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051457 "maintenance of protein location in nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
cd08049	54	cd08049, TAF8, TATA Binding Protein (TBP) Associat	7e-04
pfam01698	382	pfam01698, FLO_LFY, Floricaula / Leafy protein	0.001
pfam10406	51	pfam10406, TAF8_C, Transcription factor TFIID comp	0.002

>gnl|CDD|176263 cd08049, TAF8, TATA Binding Protein (TBP) Associated Factor 8

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 22 ETHKQPVTEYEAIREKAATQKRDLARALNKFIIKT 56
           T+ +  T+ + +RE+ A+Q+R   +AL +   KT
Sbjct: 20 PTYSERETDPKKLREELASQRRLAEKALLRLQQKT 54

The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promoter recognition, or a role in the essential catalytic activity of the complex. The mouse ortholog of TAF8 is called taube nuss protein (TBN), and is required for early embryonic development. TBN mutant mice exhibit disturbances in the balance between cell death and cell survival in the early embryo. TAF8 plays a role in the differentiation of preadipocyte fibroblasts to adipocytes; it is also required for the integration of TAF10 into the TAF complex. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF8 is also a component of a small TAF complex (SMAT), which contains TAF8, TAF10 and SUPT7L. Several TAFs interact via histone-fold motifs. The histone fold (HFD) is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. TAF8 contains an H4 related histone fold motif, and interacts with several subunits of TFIID, including TBP and the histone-fold protein TAF10. Currently, five HF-containing TAF pairs have been described or suggested to exist in TFIID: TAF6-TAF9, TAF4-TAF12, TAF11-TAF13, TAF8-TAF10 and TAF3-TAF10. Length = 54

>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 105 KKKKPTPVKKKSKKKKVEEDEEDGEEDEAEEEEGEGNEE 143
           KKK+    ++K  K+  E+D++D +ED+  E  GEG EE
Sbjct: 183 KKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEE 221

This family consists of various plant development proteins which are homologues of floricaula (FLO) and Leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development. Length = 382

>gnl|CDD|192573 pfam10406, TAF8_C, Transcription factor TFIID complex subunit 8 C-term

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 22 ETHKQPVTEYEAIREKAATQKRDLARALNKFI 53
            + +PVT+   IREK   + R   +AL K +
Sbjct: 20 PVYTEPVTDPRKIREKLVEESRLAEKALRKLL 51

This is the C-terminal, Delta, part of the TAF8 protein. The N-terminal is generally the histone fold domain, Bromo_TP (pfam07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG4336|consensus	323		100.0
cd08049	54	TAF8 TATA Binding Protein (TBP) Associated Factor	99.64
PF10406	51	TAF8_C: Transcription factor TFIID complex subunit	99.64

>KOG4336|consensus

Probab=100.00  E-value=4.2e-37  Score=270.21  Aligned_cols=162  Identities=22%  Similarity=0.313  Sum_probs=147.9

Q ss_pred             CCCCCCCchhcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhHhCCCccccCCCCCceeeeccCCCCCccc-cccC
Q psy3598           9 RSLLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIKTEPIEHIFDEADDRFTLIVPKPEMLPYL-CLIP   87 (175)
Q Consensus         9 ~~~fP~pHTYirTpt~k~PvteYeaIREkaA~QkRdvEkALtrFlaKT~pt~SLF~~d~~~FpLI~~kP~~~pYL-ALlP   87 (175)
                      -||||+|||||.||++++|+|+|++|||++|+|+|++|+||++|++||+|++|||+++.+.|++++|+|.++||. ||||
T Consensus       129 LPpfPdpHTYi~Tpi~~~p~tsyk~iRe~aaqe~r~~e~AL~~~~~r~~p~~slf~~~~~~~~e~a~~p~~~py~~almp  208 (323)
T KOG4336|consen  129 LPPFPDPHTYIKTPIYKVPDTSYKAIREKAAQESRNSEKALTNYLKRNSPTSSLFPTDPSLFPEDACKPFNLPYSNALMP  208 (323)
T ss_pred             CCCCCCCcccccCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhccCCCCCcCHHHhcCccccchHHhhCc
Confidence            489999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             CCccccc-cchhhhccCCccCCCChhhhhccccccchhcccCcchhhH-hhhcCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q psy3598          88 KDQVFEE-DEDNIQASPQKKKKPTPVKKKSKKKKVEEDEEDGEEDEAE-EEEGEGNEEPEDTSNMVPDSEAIDNPYLRPV  165 (175)
Q Consensus        88 ~dQVFD~-die~~~~~~~r~~d~~~~k~~~~~~~~~~e~~~g~~~~~e-~~~~~~~~~t~~~~~~~~~~~~IDNPyLR~~  165 (175)
                      .+||||+ .+++++.+++|+.+..-..+|.. ++.++...+++....+ .|+-....+|+++  .+.+++.  |+|.|+.
T Consensus       209 ~~~v~~~d~~~~~~i~~~~~~~~~l~d~g~~-~~~enq~m~~d~~~l~~pe~~~~~~~~ts~--~iee~~r--ks~~~~~  283 (323)
T KOG4336|consen  209 RKQVFDEDELEENNIEQYAKYRVELADEGVT-KFEENQLMLKDSETLEKPESRHQSSRTTSK--TIEEQDR--KSMTRAM  283 (323)
T ss_pred             cccchhhhhhhhhhHHHhhhcchhhhhcccc-hhhHHHHHhhchhhhhCccccccccccchh--hhHhccc--chhhhcc
Confidence            9999999 78999999999999999999975 6777777777777666 7777778888887  7777776  9999999


Q ss_pred             CCCccccCCC
Q psy3598         166 KYPQRIKSVK  175 (175)
Q Consensus       166 k~Pk~~k~~~  175 (175)
                      +.+.++++.+
T Consensus       284 ~~~~~~~~l~  293 (323)
T KOG4336|consen  284 TCLPGVQKLK  293 (323)
T ss_pred             ccCcccccCC
Confidence            9999988653

>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8

Probab=99.64  E-value=2.1e-16  Score=106.97  Aligned_cols=48  Identities=23%  Similarity=0.173  Sum_probs=46.2

Q ss_pred             CCCCCCCchhcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy3598           9 RSLLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFIIKT   56 (175)
Q Consensus         9 ~~~fP~pHTYirTpt~k~PvteYeaIREkaA~QkRdvEkALtrFlaKT   56 (175)
                      -|+||++|||++||++..+++||.++|+++|+|+|++|+||.+|++++
T Consensus         7 LP~FP~~HTY~~Tp~~~~~~~d~~~~r~~~~~~~r~~e~aL~~l~~~~   54 (54)
T cd08049           7 LPPFPDPHTYKRTPTYSERETDPKKLREELASQRRLAEKALLRLQQKT   54 (54)
T ss_pred             CCCCCCchhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            489999999999999999999999999999999999999999999874

The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo

>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []

Probab=99.64  E-value=2e-16  Score=106.66  Aligned_cols=46  Identities=26%  Similarity=0.189  Sum_probs=44.3

Q ss_pred             CCCCCCCCchhcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy3598           8 NRSLLKSSVVALLAETHKQPVTEYEAIREKAATQKRDLARALNKFI   53 (175)
Q Consensus         8 ~~~~fP~pHTYirTpt~k~PvteYeaIREkaA~QkRdvEkALtrFl   53 (175)
                      .-|.||++|||++||++..+++||.+||+++|+|+|++|+||.+||
T Consensus         6 ~lP~fP~~HTY~~Tp~~~~~~~d~~~~r~~~~~~~r~~e~aL~~l~   51 (51)
T PF10406_consen    6 WLPPFPPPHTYKRTPIYNERETDPKKIREKAAEQSRLAEKALRKLL   51 (51)
T ss_pred             cCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4589999999999999999999999999999999999999999986

The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00