Psyllid ID: psy3614

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MENMIHENQINMINNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMYESMPSPKSVWRPW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MENMIHENQINminntvdieqlqpisrtYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEgenvskleKADILELTVQHLQKMRRqqrlasnpvtdadrfragFTTCANEVSKClastpgidlrLGTKLMSHLGQRLnemdkisplsvrvmdvctpppsphsdtysmpltpassgssqvdtcdytsqykmyesmpspksvwrpw
Flexible Loop (DISEMBL)
MENMIHENQINminntvdieqlqpisrtyqyrkvmkpmlerkrRARINRCLDELKDLMVTALQAegenvsklekADILELTVQHLQKmrrqqrlasnpvtdaDRFRAGFTTCANEVSKClastpgidlRLGTKLMSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPltpassgssqvDTCDYTSQykmyesmpspksvwrpw
Low Complexity Region (SEG)
MENMIHENQINMINNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMYESMPSPKSVWRPW
Disordered region (IsUnstruct)
*********INMINNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHL***************DADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLN*******LSVRVM*****************************************************
Disordered Region (DISOPRED)
*****************************************KRRARINRCLDELKDLMVTALQAEG***SKLEKADILELTVQHLQKMRRQ****SNPVTDADRFRAGFTTCANEVSKCLASTPG***RLGTKLM*******************************************************************KSVWRPW
Disordered Region (DISEMBL)
MENMIHENQINMINNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHL***********NPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPL***********TCDYTSQYKMYE************
Disordered Region (DISPRO)
***************************TYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDK**************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENMIHENQINMINNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMYESMPSPKSVWRPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
Q01070	205	Enhancer of split mgamma	yes	N/A	0.870	0.887	0.514	4e-48
Q01069	195	Enhancer of split mbeta p	no	N/A	0.803	0.861	0.475	6e-43
P13097	186	Enhancer of split m7 prot	no	N/A	0.822	0.924	0.455	2e-35
Q01071	173	Enhancer of split mdelta	no	N/A	0.755	0.913	0.427	2e-32
Q01068	224	Enhancer of split m3 prot	no	N/A	0.569	0.531	0.488	8e-29
Q26263	435	Protein deadpan OS=Drosop	no	N/A	0.583	0.280	0.428	4e-23
Q6IRB2	267	Transcription factor HES-	N/A	N/A	0.569	0.445	0.406	8e-22
Q5PPM5	267	Transcription factor HES-	yes	N/A	0.569	0.445	0.406	1e-21
Q8AVU4	267	Transcription factor HES-	N/A	N/A	0.641	0.501	0.381	1e-21
P13098	179	Enhancer of split m8 prot	no	N/A	0.784	0.916	0.348	2e-21

>sp|Q01070|ESMC_DROME Enhancer of split mgamma protein OS=Drosophila melanogaster GN=HLHmgamma PE=2 SV=1

 Score =  191 bits (484), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 107/208 (51%), Positives = 139/208 (66%), Gaps = 26/208 (12%)

Query: 21  QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILEL 80
           Q+  +S+TYQYRKVMKPMLERKRRARIN+CLDELKDLMV  L++EGE+V++LEKADILEL
Sbjct: 5   QMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEGEHVTRLEKADILEL 64

Query: 81  TVQHLQKMR--RQQRLASN--PVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMS 136
           TV HLQKM+  RQ + AS    +T A+ FR+G+    NEVS+ L+  PG+++ LGT+LM+
Sbjct: 65  TVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHAVNEVSRSLSQLPGMNVSLGTQLMT 124

Query: 137 HLGQRLNEMDKISPLSVRVMDVCTPPPSPH---SDTYSMPLTPASSGSSQ---------- 183
           HLGQRLN+   I P    V+ V T P S H    D YS+P++P SS +            
Sbjct: 125 HLGQRLNQ---IQPAEKEVLPV-TAPLSVHIANRDAYSVPISPISSYAGSPNSNTSSTSH 180

Query: 184 --VDTCDYTSQYKMYESMPSPKSVWRPW 209
             + T D T   KM +     ++VWRPW
Sbjct: 181 SLLTTIDVT---KMEDDSEDEENVWRPW 205

Transcriptional repressor of genes that require a bHLH protein for their transcription. May serve as a transcriptional regulator of the Achaete-scute complex (AS-C) genes. Contributes to the neural-epidermal lineage decision during early neurogenesis. Part of the Notch signaling pathway.
Drosophila melanogaster (taxid: 7227)

>sp|Q01069|ESMB_DROME Enhancer of split mbeta protein OS=Drosophila melanogaster GN=HLHmbeta PE=2 SV=2

 Score =  174 bits (440), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 125/206 (60%), Gaps = 38/206 (18%)

Query: 25  ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
           +S+TYQYRKVMKPMLERKRRARIN+CLDELKD+MV  L  EGE++++LEKADILELTV+H
Sbjct: 7   MSKTYQYRKVMKPMLERKRRARINKCLDELKDIMVECLTQEGEHITRLEKADILELTVEH 66

Query: 85  LQKMRRQQRLASNPVTD------------ADRFRAGFTTCANEVSKCLASTPGIDLRLGT 132
           ++K+R Q++L  + VT             A+ FRAG+   ANEVSK LA+ PG+ + LGT
Sbjct: 67  MKKLRAQKQLRLSSVTGGVSPSADPKLSIAESFRAGYVHAANEVSKTLAAVPGVSVDLGT 126

Query: 133 KLMSHLGQRLNEMDKI-------SPLSVRVMD--VCTPPPSPHSDTYSMPLTPASSGSSQ 183
           +LMSHLG RLN +  +        PL   V D  + TPPPS      S   +PA S +S 
Sbjct: 127 QLMSHLGHRLNYLQVVVPSLPIGVPLQAPVEDQAMVTPPPSECDSLESGACSPAPSEASS 186

Query: 184 VDTCDYTSQYKMYESMPSPKSVWRPW 209
                                +WRPW
Sbjct: 187 TS-----------------GPMWRPW 195

Transcriptional repressor of genes that require a bHLH protein for their transcription. May serve as a transcriptional regulator of the Achaete-scute complex (AS-C) genes. Contributes to the neural-epidermal lineage decision during early neurogenesis. Part of the Notch signaling pathway.

Drosophila melanogaster (taxid: 7227)

>sp|P13097|ESM7_DROME Enhancer of split m7 protein OS=Drosophila melanogaster GN=HLHm7 PE=2 SV=1

 Score =  148 bits (374), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 118/193 (61%), Gaps = 21/193 (10%)

Query: 25  ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
           +S+TYQYRKVMKP+LERKRRARIN+CLDELKDLM   +   G+  +K EKADILE+TVQH
Sbjct: 7   MSKTYQYRKVMKPLLERKRRARINKCLDELKDLMAECVAQTGD--AKFEKADILEVTVQH 64

Query: 85  LQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNE 144
           L+K++  ++    P      FRAG+   ANEVS+ LAS P +D+  GT LM+HLG RLN+
Sbjct: 65  LRKLKESKKHV--PANPEQSFRAGYIRAANEVSRALASLPRVDVAFGTTLMTHLGMRLNQ 122

Query: 145 MDK--------ISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMY 196
           +++         +PLS+    VC       S + S   + +S  S    +  Y S  +  
Sbjct: 123 LEQPMEQPQAVNTPLSI----VCG-----SSSSSSTYSSASSCSSISPVSSGYASDNESL 173

Query: 197 ESMPSPKSVWRPW 209
             + SP  VWRPW
Sbjct: 174 LQISSPGQVWRPW 186

Participates in the control of cell fate choice by uncommitted neuroectodermal cells in the embryo. Transcriptional repressor. Binds DNA on N-box motifs: 5'-CACNAG-3'.

Drosophila melanogaster (taxid: 7227)

>sp|Q01071|ESMD_DROME Enhancer of split mdelta protein OS=Drosophila melanogaster GN=HLHmdelta PE=1 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/192 (42%), Positives = 112/192 (58%), Gaps = 34/192 (17%)

Query: 25  ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
           +++T  YRKV KP+LERKRRAR+N  LDELKDL+V  + A+GE VSKLEKADILELTV +
Sbjct: 9   MTKTQHYRKVTKPLLERKRRARMNLYLDELKDLIVDTMDAQGEQVSKLEKADILELTVNY 68

Query: 85  LQKMRRQQRLASNPVT------DADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHL 138
           L K ++QQR+A NP +      + D+FRAG+T  A EVS   ++ PG+DL+ GT LM  L
Sbjct: 69  L-KAQQQQRVA-NPQSPPPDQVNLDKFRAGYTQAAYEVSHIFSTVPGLDLKFGTHLMKQL 126

Query: 139 GQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYT-SQYKMYE 197
           G +L +M +       ++D+   P                     V+  D   S+    E
Sbjct: 127 GHQLKDMKQ----EEEIIDMAEEP---------------------VNLADQKRSKSPREE 161

Query: 198 SMPSPKSVWRPW 209
            +   + VWRPW
Sbjct: 162 DIHHGEEVWRPW 173

Transcriptional repressor of genes that require a bHLH protein for their transcription. May serve as a transcriptional regulator of the Achaete-scute complex (AS-C) genes. Contributes to the neural-epidermal lineage decision during early neurogenesis. Part of the Notch signaling pathway.

Drosophila melanogaster (taxid: 7227)

>sp|Q01068|ESM3_DROME Enhancer of split m3 protein OS=Drosophila melanogaster GN=HLHm3 PE=1 SV=1

 Score =  127 bits (318), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 14/133 (10%)

Query: 25  ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
           +S+TYQYRKVMKP+LERKRRARIN+CLD+LKDLMV  LQ EGE+V++LEKADILELTV H
Sbjct: 5   MSKTYQYRKVMKPLLERKRRARINKCLDDLKDLMVECLQQEGEHVTRLEKADILELTVDH 64

Query: 85  LQKMRRQQRLA-------------SNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLG 131
           ++K++++  L+             S      + FR+G+   A+++++ L  T   D  +G
Sbjct: 65  MRKLKQRGGLSLQGVVAGVGSPPTSTSTAHVESFRSGYVHAADQITQVLLQTQQTD-EIG 123

Query: 132 TKLMSHLGQRLNE 144
            K+M  L  RL E
Sbjct: 124 RKIMKFLSTRLIE 136

Transcriptional repressor of genes that require a bHLH protein for their transcription. May serve as a transcriptional regulator of the Achaete-scute complex (AS-C) genes. Belongs to notch signaling pathway and depends on Su(H) for transcriptional activation.

Drosophila melanogaster (taxid: 7227)

>sp|Q26263|DPN_DROME Protein deadpan OS=Drosophila melanogaster GN=dpn PE=1 SV=2

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 85/126 (67%), Gaps = 4/126 (3%)

Query: 30  QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
           + RK  KP++E++RRARIN CL+ELK L++ A++ +    +KLEKADILE+TV+HLQ ++
Sbjct: 39  ELRKTNKPIMEKRRRARINHCLNELKSLILEAMKKDPARHTKLEKADILEMTVKHLQSVQ 98

Query: 90  RQQ---RLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD 146
           RQQ    + S+P     +F+ GF  CA EV++ ++   GID  +  +L +HL Q  N ++
Sbjct: 99  RQQLNMAIQSDPSV-VQKFKTGFVECAEEVNRYVSQMDGIDTGVRQRLSAHLNQCANSLE 157

Query: 147 KISPLS 152
           +I  +S
Sbjct: 158 QIGSMS 163

Transcriptional repressor of genes that require a bHLH protein for their transcription. Likely to be involved in the functional rather than the morphological differentiation of neurons. Loss of DPN function results in weak motor activity, lethargic behavior, and death. Implicated in sex determination as Groucho-DPN complex act directly to repress SXL transcription.

Drosophila melanogaster (taxid: 7227)

>sp|Q6IRB2|HES1A_XENLA Transcription factor HES-1-A OS=Xenopus laevis GN=hes1-a PE=1 SV=1

 Score =  103 bits (257), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 88/123 (71%), Gaps = 4/123 (3%)

Query: 30  QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
           ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKLEKADILE+TV+HL+ ++
Sbjct: 33  EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQ 92

Query: 90  RQQ---RLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD 146
           R Q    L+++P +   ++RAGF+ C NEV++ L++  G++  + T+L+ HL   +N+++
Sbjct: 93  RVQMSAALSTDP-SVLGKYRAGFSECMNEVTRFLSTCEGVNTDVRTRLLGHLANCMNQIN 151

Query: 147 KIS 149
            ++
Sbjct: 152 GMN 154

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus laevis (taxid: 8355)

>sp|Q5PPM5|HES1_XENTR Transcription factor HES-1 OS=Xenopus tropicalis GN=hes1 PE=2 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 88/123 (71%), Gaps = 4/123 (3%)

Query: 30  QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
           ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKLEKADILE+TV+HL+ ++
Sbjct: 33  EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQ 92

Query: 90  RQQ---RLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD 146
           R Q    L+++P +   ++RAGF+ C NEV++ L++  G++  + T+L+ HL   +N+++
Sbjct: 93  RVQMTAALSTDP-SVLGKYRAGFSECMNEVTRFLSTCEGVNTDVRTRLLGHLANCMNQIN 151

Query: 147 KIS 149
            ++
Sbjct: 152 AMN 154

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVU4|HES1B_XENLA Transcription factor HES-1-B OS=Xenopus laevis GN=hes1-b PE=2 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 93/139 (66%), Gaps = 5/139 (3%)

Query: 30  QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
           ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKLEKADILE+TV+HL+ ++
Sbjct: 33  EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQ 92

Query: 90  RQQ---RLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD 146
           R Q    L+++P +   ++RAGF+ C NEV++ L++  G++  + T+L+ HL   +N++ 
Sbjct: 93  RVQMTAALSTDP-SVLGKYRAGFSECMNEVTRFLSTCEGVNTDVRTRLLGHLANCVNQIH 151

Query: 147 KIS-PLSVRVMDVCTPPPS 164
            ++ P   ++     P P+
Sbjct: 152 AMNYPAQPQIPSAAAPHPA 170

Transcriptional repressor of a subset of early mesodermal genes including myod1 and t/bra. Binds DNA on N-box motifs: 5'-CACNAG-3'. Acts as a negative regulator of myogenesis, mediating Notch signaling to repress expression of myod1.

Xenopus laevis (taxid: 8355)

>sp|P13098|ESM8_DROME Enhancer of split m8 protein OS=Drosophila melanogaster GN=E(spl) PE=1 SV=2

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 106/195 (54%), Gaps = 31/195 (15%)

Query: 26  SRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHL 85
           ++T  Y+KV KPMLER+RRAR+N+CLD LK L V  L+ + + + +++KA++LE  V  +
Sbjct: 5   TKTQIYQKVKKPMLERQRRARMNKCLDNLKTL-VAELRGD-DGILRMDKAEMLESAVIFM 62

Query: 86  QKMRRQQRLASNPVT-DADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLG----- 139
           ++ +  +++A    +   D F+ G+    NEVS+ +ASTPG+ + LG  +M+HLG     
Sbjct: 63  RQQKTPKKVAQEEQSLPLDSFKNGYMNAVNEVSRVMASTPGMSVDLGKSVMTHLGRVYKN 122

Query: 140 -QRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMYES 198
            Q+ +E    +      MD         S     PL+PASSG      CD  +       
Sbjct: 123 LQQFHEAQSAADFIQNSMDC--------SSMDKAPLSPASSGYH--SDCDSPA------- 165

Query: 199 MPSP----KSVWRPW 209
            PSP    + +WRPW
Sbjct: 166 -PSPQPMQQPLWRPW 179

Participates in the control of cell fate choice by uncommitted neuroectodermal cells in the embryo. Transcriptional repressor. Binds DNA on N-box motifs: 5'-CACNAG-3'.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
242015332	206	Enhancer of split mgamma protein, putati	0.933	0.946	0.717	8e-74
91089129	192	PREDICTED: similar to AGAP012342-PA [Tri	0.913	0.994	0.683	6e-70
307185082	207	Enhancer of split mgamma protein [Campon	0.899	0.908	0.668	1e-67
332017580	207	Enhancer of split mgamma protein [Acromy	0.880	0.888	0.655	4e-66
157104522	229	enhancer of split protein, putative [Aed	0.899	0.820	0.639	1e-64
383852908	207	PREDICTED: enhancer of split mgamma prot	0.952	0.961	0.620	2e-64
312375673	257	hypothetical protein AND_13855 [Anophele	0.942	0.766	0.549	2e-64
307212041	208	Enhancer of split mgamma protein [Harpeg	0.904	0.908	0.637	8e-64
322800789	206	hypothetical protein SINV_01248 [Solenop	0.875	0.888	0.638	2e-63
340724350	207	PREDICTED: enhancer of split mgamma prot	0.952	0.961	0.620	1e-62

>gi|242015332|ref|XP_002428313.1| Enhancer of split mgamma protein, putative [Pediculus humanus corporis] gi|212512909|gb|EEB15575.1| Enhancer of split mgamma protein, putative [Pediculus humanus corporis]

 Score =  282 bits (721), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 147/205 (71%), Positives = 164/205 (80%), Gaps = 10/205 (4%)

Query: 15  NTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEK 74
           + V+IE +QPISRTYQYRKVMKPMLERKRRARINRCLDELK+LMV ALQAEGENVSKLEK
Sbjct: 2   SAVEIEHIQPISRTYQYRKVMKPMLERKRRARINRCLDELKELMVAALQAEGENVSKLEK 61

Query: 75  ADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKL 134
           ADILELTV HL K+RRQQRLASNPVTDADRFRAGFT CA EVS+CLA+TPGID++LGTKL
Sbjct: 62  ADILELTVSHLHKLRRQQRLASNPVTDADRFRAGFTHCATEVSRCLAATPGIDIKLGTKL 121

Query: 135 MSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDT----YSMPLTPASSGSSQVDTCDYT 190
           M+HLG RLN+MDK SPLSVRV    TPP SP + T    Y MPLTPASS SS     DY+
Sbjct: 122 MTHLGHRLNDMDKTSPLSVRVGPAYTPPVSPVTSTEENSYLMPLTPASSASSHSPVLDYS 181

Query: 191 SQYKMYESMPSPK------SVWRPW 209
           S   + + +  P       S+WRPW
Sbjct: 182 SSSGLLKVVEMPAIMKPTDSMWRPW 206

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089129|ref|XP_972685.1| PREDICTED: similar to AGAP012342-PA [Tribolium castaneum] gi|270012431|gb|EFA08879.1| hypothetical protein TcasGA2_TC006580 [Tribolium castaneum]

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 155/193 (80%), Gaps = 2/193 (1%)

Query: 17  VDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKAD 76
           + +E+ QPISRTYQYRKVMKPMLERKRRARINRCLDELK+LMVTALQ+EGENVSKLEKAD
Sbjct: 2   LSVEEPQPISRTYQYRKVMKPMLERKRRARINRCLDELKELMVTALQSEGENVSKLEKAD 61

Query: 77  ILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMS 136
           ILELTV+HL K+RRQQRL++NPV DADRFRAG+T CANEVS+CLAS P +D++LGTKLM+
Sbjct: 62  ILELTVRHLHKLRRQQRLSANPVVDADRFRAGYTHCANEVSRCLASIPHVDVQLGTKLMT 121

Query: 137 HLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMY 196
           HLG RLNEMDK++PL ++V    TPP SP    YSMPLTPASS +   +     S   + 
Sbjct: 122 HLGHRLNEMDKVAPLVIQV--AYTPPGSPAPTVYSMPLTPASSQAPSPNQPMDCSTAGLL 179

Query: 197 ESMPSPKSVWRPW 209
           +       VWRPW
Sbjct: 180 KVAHKTDDVWRPW 192

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307185082|gb|EFN71281.1| Enhancer of split mgamma protein [Camponotus floridanus]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 155/196 (79%), Gaps = 8/196 (4%)

Query: 21  QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILEL 80
           Q QPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTAL  +GENV+KLEKADILEL
Sbjct: 13  QEQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALAGDGENVAKLEKADILEL 72

Query: 81  TVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQ 140
           TV+HL K++RQQRL++NPV DADRFRAG+T CANEVS+CLA+TPG+D+ LGTKLM+HLG 
Sbjct: 73  TVRHLHKLQRQQRLSANPVIDADRFRAGYTHCANEVSRCLAATPGVDVALGTKLMTHLGH 132

Query: 141 RLNEMDKISPLSVRVMD-VCTPPPSPH--SDTYSMPLTPASSGSS----QVDTCDYTSQY 193
           +LN MDK  PL++ V     +P PS    SD YSMPLTPASS  S     +DT   + Q 
Sbjct: 133 KLNSMDKTGPLTIHVAAPQSSPTPSSELSSDEYSMPLTPASSQPSPVRTDIDTVSQSHQG 192

Query: 194 KMYESMPSPKSVWRPW 209
            +  + P+ + +WRPW
Sbjct: 193 LLQVAKPN-EPIWRPW 207

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017580|gb|EGI58280.1| Enhancer of split mgamma protein [Acromyrmex echinatior]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 131/200 (65%), Positives = 154/200 (77%), Gaps = 16/200 (8%)

Query: 21  QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILEL 80
           Q QPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTAL  +GENV+KLEKADILEL
Sbjct: 13  QEQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALAGDGENVAKLEKADILEL 72

Query: 81  TVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQ 140
           TV+HL K++RQQRL++NPV DADRFRAG+T CANEVS+CLA+TPG+D+ LGTKLM+HLG 
Sbjct: 73  TVRHLHKLQRQQRLSANPVIDADRFRAGYTHCANEVSRCLAATPGVDVALGTKLMTHLGH 132

Query: 141 RLNEMDKISPLSVRVMDVCTPP---PSPHS----DTYSMPLTPASSGSS----QVDTCDY 189
           +LN MDK  PL++ V    T P   PSP S    D Y MPLTPASS  S     +D    
Sbjct: 133 KLNSMDKTGPLTIHV----TAPQSSPSPTSELSADEYPMPLTPASSQPSPVRTDIDAVSQ 188

Query: 190 TSQYKMYESMPSPKSVWRPW 209
           + Q  +  + P+ + +WRPW
Sbjct: 189 SHQGLLQVAKPN-EPIWRPW 207

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104522|ref|XP_001648447.1| enhancer of split protein, putative [Aedes aegypti] gi|108880311|gb|EAT44536.1| AAEL004097-PA [Aedes aegypti]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 155/208 (74%), Gaps = 20/208 (9%)

Query: 22  LQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELT 81
           L+P+SRTYQYRKVMKPMLERKRRARINRCLDELK+LMV+ALQ+EGENVSKLEKADILELT
Sbjct: 22  LEPLSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVSKLEKADILELT 81

Query: 82  VQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQR 141
           V+HL K+RRQQRL  NPV DADRFRAGFT  ANEVS+CLAST G+D++LGTKLM+HLG R
Sbjct: 82  VRHLHKLRRQQRLTVNPVIDADRFRAGFTHAANEVSRCLASTQGVDIKLGTKLMTHLGHR 141

Query: 142 LNEMDKISPLSVRV-MDVCTPPPSPHS---------DTYSMPLTPAS---------SGSS 182
           LN++DK+SPLSV V  ++ +PP SP S          +Y MPLTP S         S S 
Sbjct: 142 LNDLDKVSPLSVHVEQNLQSPPISPFSTSSSTAADLQSYQMPLTPQSYRSGSGNSNSPSP 201

Query: 183 QVDTCDYT-SQYKMYESMPSPKSVWRPW 209
               C  T S  +    +   +SVWRPW
Sbjct: 202 NPSECSSTGSDQQTSGLLKIQESVWRPW 229

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852908|ref|XP_003701967.1| PREDICTED: enhancer of split mgamma protein-like [Megachile rotundata]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/211 (62%), Positives = 157/211 (74%), Gaps = 12/211 (5%)

Query: 5   IHENQINMINNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQA 64
           +HE Q+ M++      Q QPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTAL  
Sbjct: 3   MHE-QMMMVDG-----QEQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALAG 56

Query: 65  EGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTP 124
           +GENV+KLEKADILELTV+HL K++RQQRL++NPV DADRFRAG+T CANEVS+CLA+TP
Sbjct: 57  DGENVAKLEKADILELTVRHLHKLQRQQRLSANPVIDADRFRAGYTHCANEVSRCLAATP 116

Query: 125 GIDLRLGTKLMSHLGQRLNEMDKISPLSVRV---MDVCTPPPSPHSDTYSMPLTPASSGS 181
           G+D+ LGTKLM+HLG +LN MDK  PL++ V       +      SD YSMPLTPASS  
Sbjct: 117 GVDVALGTKLMTHLGHKLNSMDKTGPLTIHVAAPQSSPSSGSELSSDEYSMPLTPASSQP 176

Query: 182 SQV--DTCDYTSQYKMYESMPSPKS-VWRPW 209
           S V  D    +  ++    +  P   +WRPW
Sbjct: 177 SPVRTDIEGISQSHQGLLQVAKPNEPIWRPW 207

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375673|gb|EFR22996.1| hypothetical protein AND_13855 [Anopheles darlingi]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/244 (54%), Positives = 163/244 (66%), Gaps = 47/244 (19%)

Query: 13  INNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKL 72
           I   +   QL+P+SRTYQYRKVMKPMLERKRRARINRCLDELK+LMV+ALQ+EGENV+KL
Sbjct: 14  IGTKLSPSQLEPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALQSEGENVAKL 73

Query: 73  EKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGT 132
           EKADILELTV+HL K+RRQQRLA+NPV DADRFRAGFT  ANEVS+CLASTPG+D++LGT
Sbjct: 74  EKADILELTVRHLHKLRRQQRLAANPVIDADRFRAGFTHAANEVSRCLASTPGVDIKLGT 133

Query: 133 KLMSHLGQRLNEMDKISPLSVRV-------------------MDVCTPPPSPHSDT---- 169
           KLM+HLG RLN++DK+SPL+V++                   M   +  PSP   T    
Sbjct: 134 KLMTHLGHRLNDLDKVSPLTVQIGSSSSSSSSSSVDEPEDIQMPASSGSPSPCYSTGRSS 193

Query: 170 -----YSMPLTPASSGSSQ------------------VDTCDYTSQYKMYESMPSP-KSV 205
                YSMPLTP S  S +                   +  D+T+   + +   S  +SV
Sbjct: 194 PLMSGYSMPLTPQSYRSEESAMMMMGDSSSATPSPNPSECGDHTATEGLLKIQQSAGESV 253

Query: 206 WRPW 209
           WRPW
Sbjct: 254 WRPW 257

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212041|gb|EFN87924.1| Enhancer of split mgamma protein [Harpegnathos saltator]

 Score =  248 bits (634), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 125/196 (63%), Positives = 148/196 (75%), Gaps = 7/196 (3%)

Query: 21  QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILEL 80
           Q QPISRTYQYRKVMKPMLERKRRARINRCLDELK+LMVTAL  +GENV+KLEKADILEL
Sbjct: 13  QEQPISRTYQYRKVMKPMLERKRRARINRCLDELKELMVTALAGDGENVAKLEKADILEL 72

Query: 81  TVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQ 140
           TV+HL K++RQQRL++NPV DADRFRAG+T CANEVS+CLA+TPG+D+ LGTKLM+HLG 
Sbjct: 73  TVRHLHKLQRQQRLSANPVIDADRFRAGYTHCANEVSRCLAATPGVDVALGTKLMTHLGH 132

Query: 141 RLNEMDKISPLSVRV---MDVCTPPPSPHSDTYSMPLTPASSGSSQVDT----CDYTSQY 193
           +LN MDK  PL++ V       +      SD Y+MPLTPASS  S V T        S  
Sbjct: 133 KLNSMDKTGPLTIHVAAPQSSPSSASELSSDEYAMPLTPASSQPSPVRTDIEAAVSQSHQ 192

Query: 194 KMYESMPSPKSVWRPW 209
            + +     + +WRPW
Sbjct: 193 GLLQVAKPNEPIWRPW 208

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800789|gb|EFZ21665.1| hypothetical protein SINV_01248 [Solenopsis invicta]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/199 (63%), Positives = 151/199 (75%), Gaps = 16/199 (8%)

Query: 21  QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILEL 80
           Q QPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTAL  +GENV+KLEKADILEL
Sbjct: 13  QEQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALAGDGENVAKLEKADILEL 72

Query: 81  TVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQ 140
           TV+HL K++RQQRL++NPV DADRFRAG+T CANEVS+CLA+TPG+D+ LGTKLM+HLG 
Sbjct: 73  TVRHLHKLQRQQRLSANPVIDADRFRAGYTHCANEVSRCLAATPGVDVALGTKLMTHLGH 132

Query: 141 RLNEMDKISPLSVRVMDVCTPPPSPH-------SDTYSMPLTPASSGSS----QVDTCDY 189
           +LN MDK  PL++ V    T P S         +D Y MPLTPASS  S     +D    
Sbjct: 133 KLNSMDKTGPLTIHV----TAPQSSPSPSSELSADEYPMPLTPASSQPSPVRTDIDAVSQ 188

Query: 190 TSQYKMYESMPSPKSVWRP 208
           + Q  +  + P+ + +WRP
Sbjct: 189 SHQGLLQVAKPN-EPIWRP 206

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724350|ref|XP_003400545.1| PREDICTED: enhancer of split mgamma protein-like [Bombus terrestris] gi|350397652|ref|XP_003484943.1| PREDICTED: enhancer of split mgamma protein-like [Bombus impatiens]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/211 (62%), Positives = 158/211 (74%), Gaps = 12/211 (5%)

Query: 5   IHENQINMINNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQA 64
           +HE QI M++      Q QPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTAL  
Sbjct: 3   MHE-QIMMVDG-----QEQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALAG 56

Query: 65  EGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTP 124
           +GENV+KLEKADILELTV+HL K++RQQRL++NPV DADRFRAG+T CANEVS+CLA+TP
Sbjct: 57  DGENVAKLEKADILELTVRHLHKLQRQQRLSANPVIDADRFRAGYTHCANEVSRCLAATP 116

Query: 125 GIDLRLGTKLMSHLGQRLNEMDKISPLSVRV---MDVCTPPPSPHSDTYSMPLTPASSGS 181
           G+D+ LGTKLM+HLG +LN MDK  PL++ V       +      SD YSMPLTPASS  
Sbjct: 117 GVDVALGTKLMTHLGHKLNSMDKTGPLTIHVAAPQSSPSSSSELSSDEYSMPLTPASSQP 176

Query: 182 S--QVDTCDYTSQYKMYESMPSPKS-VWRPW 209
           S  ++D    +  ++    +  P   +WRPW
Sbjct: 177 SPVRIDIEGISQNHQGLLQVAKPNEPIWRPW 207

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
FB|FBgn0002735	205	E(spl)mgamma-HLH "Enhancer of	0.885	0.902	0.521	2.7e-45
FB|FBgn0002733	195	E(spl)mbeta-HLH "Enhancer of s	0.846	0.907	0.482	1.8e-39
FB|FBgn0002633	186	E(spl)m7-HLH "Enhancer of spli	0.851	0.956	0.475	3.9e-37
FB|FBgn0002734	173	E(spl)mdelta-HLH "Enhancer of	0.574	0.693	0.563	1.3e-32
FB|FBgn0002609	224	E(spl)m3-HLH "Enhancer of spli	0.574	0.535	0.492	5.3e-30
ZFIN|ZDB-GENE-980526-144	334	her6 "hairy-related 6" [Danio	0.818	0.511	0.363	7.4e-27
UNIPROTKB|Q8AVU4	267	hes1-b "Transcription factor H	0.775	0.606	0.356	3.1e-26
UNIPROTKB|Q5PPM5	267	hes1 "Transcription factor HES	0.712	0.558	0.363	4e-26
UNIPROTKB|Q90Z12	281	hes4-a "Transcription factor H	0.736	0.548	0.376	4e-26
UNIPROTKB|Q6IRB2	267	hes1-a "Transcription factor H	0.775	0.606	0.356	5.1e-26

FB|FBgn0002735 E(spl)mgamma-HLH "Enhancer of split mgamma, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 107/205 (52%), Positives = 139/205 (67%)

Query:    21 QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILEL 80
             Q+  +S+TYQYRKVMKPMLERKRRARIN+CLDELKDLMV  L++EGE+V++LEKADILEL
Sbjct:     5 QMSEMSKTYQYRKVMKPMLERKRRARINKCLDELKDLMVATLESEGEHVTRLEKADILEL 64

Query:    81 TVQHLQKMR--RQQRLASNP--VTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMS 136
             TV HLQKM+  RQ + AS    +T A+ FR+G+    NEVS+ L+  PG+++ LGT+LM+
Sbjct:    65 TVTHLQKMKQQRQHKRASGDESLTPAEGFRSGYIHAVNEVSRSLSQLPGMNVSLGTQLMT 124

Query:   137 HLGQRLNEMDKISPLSVRVMDVCTPPPSPH---SDTYSMPLTPASS--GSSQVDTCDYTS 191
             HLGQRLN+   I P    V+ V T P S H    D YS+P++P SS  GS   +T   + 
Sbjct:   125 HLGQRLNQ---IQPAEKEVLPV-TAPLSVHIANRDAYSVPISPISSYAGSPNSNTSSTSH 180

Query:   192 QY-------KMYESMPSPKSVWRPW 209
                      KM +     ++VWRPW
Sbjct:   181 SLLTTIDVTKMEDDSEDEENVWRPW 205

GO:0005634 "nucleus" evidence=IC;NAS

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IMP;IDA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0048749 "compound eye development" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0007399 "nervous system development" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0008134 "transcription factor binding" evidence=IGI

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048190 "wing disc dorsal/ventral pattern formation" evidence=IGI

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

FB|FBgn0002733 E(spl)mbeta-HLH "Enhancer of split mbeta, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 95/197 (48%), Positives = 125/197 (63%)

Query:    25 ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
             +S+TYQYRKVMKPMLERKRRARIN+CLDELKD+MV  L  EGE++++LEKADILELTV+H
Sbjct:     7 MSKTYQYRKVMKPMLERKRRARINKCLDELKDIMVECLTQEGEHITRLEKADILELTVEH 66

Query:    85 LQKMRRQQ--RLAS-----NPVTD-----ADRFRAGFTTCANEVSKCLASTPGIDLRLGT 132
             ++K+R Q+  RL+S     +P  D     A+ FRAG+   ANEVSK LA+ PG+ + LGT
Sbjct:    67 MKKLRAQKQLRLSSVTGGVSPSADPKLSIAESFRAGYVHAANEVSKTLAAVPGVSVDLGT 126

Query:   133 KLMSHLGQRLNEMDKISPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQ 192
             +LMSHLG RLN +  + P     + +  P  +P  D   +   P+   S +   C     
Sbjct:   127 QLMSHLGHRLNYLQVVVPS----LPIGVPLQAPVEDQAMVTPPPSECDSLESGACSPAPS 182

Query:   193 YKMYESMPSPKSVWRPW 209
                  S P    +WRPW
Sbjct:   183 EASSTSGP----MWRPW 195

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEP;ISS

GO:0005634 "nucleus" evidence=IC;NAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0007399 "nervous system development" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

FB|FBgn0002633 E(spl)m7-HLH "Enhancer of split m7, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 89/187 (47%), Positives = 116/187 (62%)

Query:    25 ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
             +S+TYQYRKVMKP+LERKRRARIN+CLDELKDLM   +   G+  +K EKADILE+TVQH
Sbjct:     7 MSKTYQYRKVMKPLLERKRRARINKCLDELKDLMAECVAQTGD--AKFEKADILEVTVQH 64

Query:    85 LQKMRRQQRLASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNE 144
             L+K++  ++    P      FRAG+   ANEVS+ LAS P +D+  GT LM+HLG RLN+
Sbjct:    65 LRKLKESKKHV--PANPEQSFRAGYIRAANEVSRALASLPRVDVAFGTTLMTHLGMRLNQ 122

Query:   145 MDKI--SPLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMYESMPSP 202
             +++    P +V          S  S TYS     + S  S V +  Y S  +    + SP
Sbjct:   123 LEQPMEQPQAVNTPLSIVCGSSSSSSTYSS--ASSCSSISPVSS-GYASDNESLLQISSP 179

Query:   203 KSVWRPW 209
               VWRPW
Sbjct:   180 GQVWRPW 186

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IGI;IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

FB|FBgn0002734 E(spl)mdelta-HLH "Enhancer of split mdelta, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 332 (121.9 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 71/126 (56%), Positives = 93/126 (73%)

Query:    25 ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
             +++T  YRKV KP+LERKRRAR+N  LDELKDL+V  + A+GE VSKLEKADILELTV +
Sbjct:     9 MTKTQHYRKVTKPLLERKRRARMNLYLDELKDLIVDTMDAQGEQVSKLEKADILELTVNY 68

Query:    85 LQKMRRQQRLAS--NPVTDA---DRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLG 139
             L K ++QQR+A+  +P  D    D+FRAG+T  A EVS   ++ PG+DL+ GT LM  LG
Sbjct:    69 L-KAQQQQRVANPQSPPPDQVNLDKFRAGYTQAAYEVSHIFSTVPGLDLKFGTHLMKQLG 127

Query:   140 QRLNEM 145
              +L +M
Sbjct:   128 HQLKDM 133

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=IC;NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS;IDA;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0007399 "nervous system development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0048052 "R1/R6 cell differentiation" evidence=IMP

FB|FBgn0002609 E(spl)m3-HLH "Enhancer of split m3, helix-loop-helix" [Drosophila melanogaster (taxid:7227)]

 Score = 304 (112.1 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
 Identities = 66/134 (49%), Positives = 93/134 (69%)

Query:    25 ISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQH 84
             +S+TYQYRKVMKP+LERKRRARIN+CLD+LKDLMV  LQ EGE+V++LEKADILELTV H
Sbjct:     5 MSKTYQYRKVMKPLLERKRRARINKCLDDLKDLMVECLQQEGEHVTRLEKADILELTVDH 64

Query:    85 LQKMRRQQRLA--------SNPVTDA-----DRFRAGFTTCANEVSKCLASTPGIDLRLG 131
             ++K++++  L+         +P T       + FR+G+   A+++++ L  T   D  +G
Sbjct:    65 MRKLKQRGGLSLQGVVAGVGSPPTSTSTAHVESFRSGYVHAADQITQVLLQTQQTD-EIG 123

Query:   132 TKLMSHLGQRLNEM 145
              K+M  L  RL E+
Sbjct:   124 RKIMKFLSTRLIEL 137

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0005634 "nucleus" evidence=NAS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0048749 "compound eye development" evidence=TAS

GO:0003677 "DNA binding" evidence=NAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0007219 "Notch signaling pathway" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

ZFIN|ZDB-GENE-980526-144 her6 "hairy-related 6" [Danio rerio (taxid:7955)]

 Score = 275 (101.9 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
 Identities = 68/187 (36%), Positives = 113/187 (60%)

Query:    30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
             ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKLEKADILE+TV+HL+ M+
Sbjct:    97 EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNMQ 156

Query:    90 RQQRLAS---NPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD 146
             R Q  A+   +P T   ++RAGF+ C NEV++ L++  G++  + T+L+ HL   + +++
Sbjct:   157 RAQMTAALNTDP-TVLGKYRAGFSECMNEVTRFLSTCEGVNTEVRTRLLGHLASCMTQIN 215

Query:   147 KIS-PLSVRVMD--VCTP---P----PSPHSDTYSMPLT--PASSGSSQVDTCDYTSQYK 194
              ++ P   +++   +  P   P    PS       +PL+  P  SGSS   T D T  Y 
Sbjct:   216 AMNYPTQHQILPGLLIHPSVNPWFKIPSATQQANVVPLSGVPCKSGSSSNLTSDATKVYG 275

Query:   195 MYESMPS 201
              ++ +P+
Sbjct:   276 GFQLVPA 282

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001757 "somite specification" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0021794 "thalamus development" evidence=IMP

GO:0045664 "regulation of neuron differentiation" evidence=IMP

UNIPROTKB|Q8AVU4 hes1-b "Transcription factor HES-1-B" [Xenopus laevis (taxid:8355)]

 Score = 266 (98.7 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 61/171 (35%), Positives = 104/171 (60%)

Query:    13 INNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKL 72
             ++NT D    +P + + ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKL
Sbjct:    21 VSNTPD----KPKTAS-EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKL 75

Query:    73 EKADILELTVQHLQKMRRQQRLA--SNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRL 130
             EKADILE+TV+HL+ ++R Q  A  S   +   ++RAGF+ C NEV++ L++  G++  +
Sbjct:    76 EKADILEMTVKHLRNLQRVQMTAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTDV 135

Query:   131 GTKLMSHLGQRLNEMDKIS-PLSVRVMDVCTPPPSPHSDTYSMPLT-PASS 179
              T+L+ HL   +N++  ++ P   ++     P P+       +P   P SS
Sbjct:   136 RTRLLGHLANCVNQIHAMNYPAQPQIPSAAAPHPAYGQPMVQLPAAAPQSS 186

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0048635 "negative regulation of muscle organ development" evidence=ISS

UNIPROTKB|Q5PPM5 hes1 "Transcription factor HES-1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 265 (98.3 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 57/157 (36%), Positives = 96/157 (61%)

Query:    30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
             ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKLEKADILE+TV+HL+ ++
Sbjct:    33 EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQ 92

Query:    90 RQQRLA--SNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDK 147
             R Q  A  S   +   ++RAGF+ C NEV++ L++  G++  + T+L+ HL   +N+++ 
Sbjct:    93 RVQMTAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTDVRTRLLGHLANCMNQINA 152

Query:   148 IS-PLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQ 183
             ++ P   ++     P P+     Y  PL      + Q
Sbjct:   153 MNYPTQPQIPAAAAPHPA-----YGQPLVQLQGAAPQ 184

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=ISS

GO:0048635 "negative regulation of muscle organ development" evidence=ISS

UNIPROTKB|Q90Z12 hes4-a "Transcription factor HES-4-A" [Xenopus laevis (taxid:8355)]

 Score = 264 (98.0 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 61/162 (37%), Positives = 99/162 (61%)

Query:    30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
             ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKLEKADILE+TV+HL+ ++
Sbjct:    33 EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKLEKADILEMTVKHLRNLQ 92

Query:    90 RQQR---LASNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD 146
             R Q    L S+P     ++RAGF  C NEV++ L++  G++  + T+L+ HL   L ++ 
Sbjct:    93 RVQMTAALTSDPSV-LGKYRAGFNECTNEVTRFLSTCEGVNTEVRTRLLGHLSSCLGQIV 151

Query:   147 KIS----PLSVRVMDVCTPPPSPHSDTYSMPLTPASSGSSQV 184
              ++    P S + + V  P  +P     S  + PA + S +V
Sbjct:   152 AMNYQQPPSSQQPLHVQLPSSTPAPMPISCKVNPAEAISPKV 193

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0002088 "lens development in camera-type eye" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0008283 "cell proliferation" evidence=IMP

GO:0014029 "neural crest formation" evidence=IMP

GO:0021501 "prechordal plate formation" evidence=IMP

GO:0030509 "BMP signaling pathway" evidence=IMP

GO:0033504 "floor plate development" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043425 "bHLH transcription factor binding" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

UNIPROTKB|Q6IRB2 hes1-a "Transcription factor HES-1-A" [Xenopus laevis (taxid:8355)]

 Score = 265 (98.3 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 61/171 (35%), Positives = 105/171 (61%)

Query:    13 INNTVDIEQLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKL 72
             ++NT D    +P + + ++RK  KP++E++RRARIN  L +LK L++ AL+ +    SKL
Sbjct:    21 VSNTPD----KPKTAS-EHRKSSKPIMEKRRRARINESLGQLKTLILDALKKDSSRHSKL 75

Query:    73 EKADILELTVQHLQKMRRQQRLA--SNPVTDADRFRAGFTTCANEVSKCLASTPGIDLRL 130
             EKADILE+TV+HL+ ++R Q  A  S   +   ++RAGF+ C NEV++ L++  G++  +
Sbjct:    76 EKADILEMTVKHLRNLQRVQMSAALSTDPSVLGKYRAGFSECMNEVTRFLSTCEGVNTDV 135

Query:   131 GTKLMSHLGQRLNEMDKIS-PLSVRVMDVCTPPPSPHSDTYSMP-LTPASS 179
              T+L+ HL   +N+++ ++ P   ++     P P+       +P   P SS
Sbjct:   136 RTRLLGHLANCMNQINGMNYPTQPQMPSAAAPHPAYGQPMVQLPGAAPQSS 186

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0043425 "bHLH transcription factor binding" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0048635 "negative regulation of muscle organ development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q01070	ESMC_DROME	No assigned EC number	0.5144	0.8708	0.8878	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	209
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	9e-14
smart00511	45	smart00511, ORANGE, Orange domain	6e-13
pfam07527	42	pfam07527, Hairy_orange, Hairy Orange	8e-13
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	8e-13
smart00353	53	smart00353, HLH, helix loop helix domain	8e-12

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 63.0 bits (154), Expect = 9e-14
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR 90
           R+    + ER+RR RIN   DEL+ L+ T          KL KA+IL   V +++ ++ 
Sbjct: 3  SRREAHNLRERRRRERINDAFDELRSLLPTL-----PPSKKLSKAEILRKAVDYIKSLQE 57

Query: 91 QQR 93
            +
Sbjct: 58 LLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|128787 smart00511, ORANGE, Orange domain

 Score = 60.6 bits (148), Expect = 6e-13
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 105 FRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEM 145
           FR+G+  CANEVS+ L+  PG D  +  +L+SHL   LN++
Sbjct: 3   FRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQL 43

This domain confers specificity among members of the Hairy/E(SPL) family. Length = 45

>gnl|CDD|219453 pfam07527, Hairy_orange, Hairy Orange

 Score = 59.9 bits (146), Expect = 8e-13
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 104 RFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEM 145
           +FRAGF  C NEV++ L+S  G+D  +  +L+SHL   LN++
Sbjct: 1   KFRAGFRECLNEVARFLSSVEGVDPDVRARLLSHLASCLNQL 42

The Orange domain is found in the Drosophila proteins Hesr-1, Hairy, and Enhancer of Split. The Orange domain is proposed to mediate specific protein-protein interaction between Hairy and Scute. Length = 42

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 60.2 bits (147), Expect = 8e-13
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
          R+      ER+RR RIN   +EL++L+ T          KL KA+IL L +++++ ++
Sbjct: 1  RRKAHNERERRRRDRINDAFEELRELLPTP------PNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 57.6 bits (140), Expect = 8e-12
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 5/57 (8%)

Query: 37 PMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
             ER+RR +IN   DEL+ L+ T          KL KA+IL L +++++ ++ + +
Sbjct: 1  NARERRRRRKINEAFDELRSLLPTLP-----KNKKLSKAEILRLAIEYIKSLQEELQ 52

Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG4304|consensus	250		100.0
PF07527	43	Hairy_orange: Hairy Orange; InterPro: IPR003650 Th	99.48
smart00511	45	ORANGE Orange domain. This domain confers specific	99.43
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.38
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.28
smart00353	53	HLH helix loop helix domain.	99.15
KOG1318|consensus	411		98.78
KOG3561|consensus	803		98.71
KOG1319|consensus	229		98.24
KOG3560|consensus	712		97.78
KOG0561|consensus	373		97.04
KOG2483|consensus	232		96.58
KOG2588|consensus	953		96.07
KOG3960|consensus	284		95.93
KOG4029|consensus	228		95.26
KOG3558|consensus	768		94.83
PLN03217	93	transcription factor ATBS1; Provisional	94.41
KOG3910|consensus	632		91.57
KOG3559|consensus	598		87.11

>KOG4304|consensus

Probab=100.00  E-value=6e-45  Score=320.32  Aligned_cols=129  Identities=53%  Similarity=0.843  Sum_probs=117.0

Q ss_pred             ccCccchhhhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhccCCC--
Q psy3614          21 QLQPISRTYQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNP--   98 (209)
Q Consensus        21 ~~~~~s~t~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~~~~~--   98 (209)
                      .....++++++||++||+||||||||||+||++||.||++++++|+..++||||||||||||+|||+|++.+......  
T Consensus        21 ~~~~~~~~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~~~~~  100 (250)
T KOG4304|consen   21 SDERSSKTRQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAAQAAP  100 (250)
T ss_pred             CCCcchhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccccccc
Confidence            344678999999999999999999999999999999999999999888999999999999999999999877543322  


Q ss_pred             -cccHHhhhhhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhhhcccccCC
Q psy3614          99 -VTDADRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKIS  149 (209)
Q Consensus        99 -~~~~~~fraGf~~C~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~~~~~  149 (209)
                       ....+.|++||++|++||++||+.++|+|..++++||+||+.+++++++..
T Consensus       101 ~~~~~d~f~~Gf~ec~~EVsr~ls~~~~~~~~~~~~L~~HL~~~~~~~~~~~  152 (250)
T KOG4304|consen  101 AALPVDSFRAGFRECAAEVSRYLSICPGMDAAKGTRLLTHLQAHLAQLEQST  152 (250)
T ss_pred             ccccchhhhccHHHHHHHHHHHHhhCCCCChHHHhHHHHHHHHHhhcccCcc
Confidence             345789999999999999999999999999999999999999999998743

>PF07527 Hairy_orange: Hairy Orange; InterPro: IPR003650 This domain confers specificity among members of the Hairy/E(SPL) family

Probab=99.48  E-value=3.1e-14  Score=94.47  Aligned_cols=43  Identities=42%  Similarity=0.807  Sum_probs=36.6

Q ss_pred             HhhhhhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhhhccc
Q psy3614         103 DRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEM  145 (209)
Q Consensus       103 ~~fraGf~~C~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~  145 (209)
                      ++|++||++|++||++||+..+++++.++.+||+||+++++++
T Consensus         1 ~~y~~Gy~~C~~Ev~~fL~~~~~~~~~~~~rLl~HL~~~~~~~   43 (43)
T PF07527_consen    1 QKYRAGYSECLNEVSRFLSSVEGVDPGVRARLLSHLQSCLNQI   43 (43)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHTS---THHHHHHHHHHHHHHHH-
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhcCC
Confidence            4799999999999999999999999999999999999998764

HES-2 (hairy and enhancer of split 2) is a transcription factor, and the hairy protein is a pair-rule protein that regulates embryonic segmentation and adult bristle patterning. These proteins are transcriptional repressors of genes that require the BHLH protein for their transcription.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DB7_A.

>smart00511 ORANGE Orange domain

Probab=99.43  E-value=1.3e-13  Score=92.02  Aligned_cols=44  Identities=43%  Similarity=0.788  Sum_probs=41.2

Q ss_pred             HhhhhhHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhhhcccc
Q psy3614         103 DRFRAGFTTCANEVSKCLASTPGIDLRLGTKLMSHLGQRLNEMD  146 (209)
Q Consensus       103 ~~fraGf~~C~~EVsrfLs~~~gvd~~~~~rLlsHL~~~l~~~~  146 (209)
                      ++|++||++|++||++||++.+++++.++.+||+||+.+++++.
T Consensus         1 ~~y~~Gy~~C~~Ev~~fLs~~~~~~~~~~~~Ll~HL~~~~~~~~   44 (45)
T smart00511        1 SSFRSGYRECANEVSRFLSQLPGTDPDVRARLLSHLQTHLNQLL   44 (45)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhhc
Confidence            47999999999999999999999999999999999999998764

This domain confers specificity among members of the Hairy/E(SPL) family.

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.38  E-value=2.1e-13  Score=93.36  Aligned_cols=55  Identities=35%  Similarity=0.615  Sum_probs=48.9

Q ss_pred             hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Q psy3614          32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR   89 (209)
Q Consensus        32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq   89 (209)
                      ||..|...||+||++||.++++|+.+||.+.   .....|++|++||+.||+||+.||
T Consensus         1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~---~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    1 RRQKHNERERRRRDRINDCFDELRELLPSCS---AGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHH---CCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHhccchh---ccccccCCHHHHHHHHHHHHHHhC
Confidence            5778899999999999999999999999964   223489999999999999999986

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.28  E-value=2.8e-12  Score=87.85  Aligned_cols=56  Identities=36%  Similarity=0.526  Sum_probs=50.7

Q ss_pred             hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      .+|..+...||+||++||.+|++|+.+||...     ...|++|++||++||+||+.|+..
T Consensus         3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~-----~~~k~~k~~iL~~a~~yI~~L~~~   58 (60)
T cd00083           3 SRREAHNLRERRRRERINDAFDELRSLLPTLP-----PSKKLSKAEILRKAVDYIKSLQEL   58 (60)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999999999999999874     248999999999999999999864

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.15  E-value=3.8e-11  Score=80.92  Aligned_cols=50  Identities=38%  Similarity=0.614  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        38 l~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      +.||+||++||.+|++|+.+||...     ...|++|++||++||+|++.|+.+.
T Consensus         2 ~~Er~RR~~~n~~~~~L~~lip~~~-----~~~k~~k~~iL~~ai~yi~~L~~~~   51 (53)
T smart00353        2 ARERRRRRKINEAFDELRSLLPTLP-----NNKKLSKAEILRLAIEYIKSLQEEL   51 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999763     2389999999999999999998653

>KOG1318|consensus

Probab=98.78  E-value=3.9e-09  Score=99.29  Aligned_cols=60  Identities=22%  Similarity=0.313  Sum_probs=53.5

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      +..||..|.++|||||+.||+.|.+|..|||++.    ....|++|..||..+|+|++.|++..
T Consensus       230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~----~~~~~~nKgtILk~s~dYIr~Lqq~~  289 (411)
T KOG1318|consen  230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCN----SEDMKSNKGTILKASCDYIRELQQTL  289 (411)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCC----cchhhcccchhhHHHHHHHHHHHHHH
Confidence            4577889999999999999999999999999994    33489999999999999999998654

>KOG3561|consensus

Probab=98.71  E-value=1.7e-08  Score=101.54  Aligned_cols=57  Identities=25%  Similarity=0.521  Sum_probs=51.4

Q ss_pred             hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      .+..+..+||||||.+|..|+||.+|||.+..    -..|+||..||++||+|||.++...
T Consensus        20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~----~~RK~DK~tVLr~aV~~lr~~k~~~   76 (803)
T KOG3561|consen   20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNAS----LSRKPDKLTVLRMAVDHLRLIKEQE   76 (803)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHhhhcchh----cccCchHHHHHHHHHHHHHHHhhhh
Confidence            46778899999999999999999999999964    3499999999999999999998763

>KOG1319|consensus

Probab=98.24  E-value=1.1e-06  Score=75.99  Aligned_cols=85  Identities=26%  Similarity=0.353  Sum_probs=63.1

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhccCC-------CcccH
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASN-------PVTDA  102 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~~~~-------~~~~~  102 (209)
                      ..||..|.--|++|||-||...+.|+.|||.+...+.. .-|+.||-||..|++|+..|+.+..-...       .+.+.
T Consensus        60 ~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~-g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL  138 (229)
T KOG1319|consen   60 DRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSI-GQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTAL  138 (229)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888999999999999999999999999665432 24999999999999999999876432111       12223


Q ss_pred             HhhhhhHHHHHHH
Q psy3614         103 DRFRAGFTTCANE  115 (209)
Q Consensus       103 ~~fraGf~~C~~E  115 (209)
                      +--..||-+-+.-
T Consensus       139 ~iIk~~YEqM~~~  151 (229)
T KOG1319|consen  139 KIIKVNYEQMVKA  151 (229)
T ss_pred             HHHHHHHHHHHHh
Confidence            4455677665543

>KOG3560|consensus

Probab=97.78  E-value=1e-05  Score=78.89  Aligned_cols=44  Identities=34%  Similarity=0.526  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Q psy3614          40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQK   87 (209)
Q Consensus        40 EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~   87 (209)
                      -||-|||+|..||.|.+|||-.    .+.++||||..||.++|.||+.
T Consensus        33 SKRHRdRLNaELD~lAsLLPfp----qdiisKLDkLSVLRLSVSyLr~   76 (712)
T KOG3560|consen   33 SKRHRDRLNAELDHLASLLPFP----QDIISKLDKLSVLRLSVSYLRV   76 (712)
T ss_pred             chhHHHHhhhHHHHHHHhcCCC----HHHHhhhhhhhhhhhhHHHHHH
Confidence            4999999999999999999865    3356999999999999999985

>KOG0561|consensus

Probab=97.04  E-value=0.00081  Score=62.01  Aligned_cols=49  Identities=31%  Similarity=0.442  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        38 l~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      -=||||=.-||..|..||.|||..-   |   .||.||.||+.|-+|+..|.+++
T Consensus        66 sNERRRMQSINAGFqsLr~LlPr~e---G---EKLSKAAILQQTa~yI~~Le~~K  114 (373)
T KOG0561|consen   66 SNERRRMQSINAGFQSLRALLPRKE---G---EKLSKAAILQQTADYIHQLEGHK  114 (373)
T ss_pred             chHHHHHHhhhHHHHHHHHhcCccc---c---hhhHHHHHHHHHHHHHHHHHhcc
Confidence            4488888999999999999999873   3   89999999999999999987664

>KOG2483|consensus

Probab=96.58  E-value=0.0021  Score=56.97  Aligned_cols=59  Identities=25%  Similarity=0.470  Sum_probs=47.7

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ....+..+..+||+|||-|-.||+.||.+||..-+   .  .+=.-+.||.-++.|++.|+...
T Consensus        56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~---~--~~~t~lsiL~kA~~~i~~l~~~~  114 (232)
T KOG2483|consen   56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNG---E--TRSTTLSILDKALEHIQSLERKS  114 (232)
T ss_pred             CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCC---c--chhhhhHhhhhHHHHHHHHHhHH
Confidence            34566777899999999999999999999998722   1  22237999999999999998654

>KOG2588|consensus

Probab=96.07  E-value=0.0041  Score=64.08  Aligned_cols=55  Identities=24%  Similarity=0.412  Sum_probs=50.8

Q ss_pred             hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      -||..|.+||||=|--||+.+.|||.+++..-       .|+.|..+|.-+++|++.++...
T Consensus       275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~-------aKl~kSavLr~ai~~i~dl~~~n  329 (953)
T KOG2588|consen  275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTE-------AKLNKSAVLRKAIDYIEDLQGYN  329 (953)
T ss_pred             cccchhhHHHHHhhcchhHHHHHHHHhcCccH-------hhhhhhhhHHHHHHHHHHhhccc
Confidence            68999999999999999999999999999762       89999999999999999998654

>KOG3960|consensus

Probab=95.93  E-value=0.0096  Score=53.77  Aligned_cols=54  Identities=22%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614          31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR   90 (209)
Q Consensus        31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~   90 (209)
                      +|+..-.|=||||=.++|+.++.||.=--      ...+-+|-|.+||..+|+|+..||.
T Consensus       117 DRRKAATMRERRRLkKVNEAFE~LKRrT~------~NPNQRLPKVEILRsAI~YIE~Lq~  170 (284)
T KOG3960|consen  117 DRRKAATMRERRRLKKVNEAFETLKRRTS------SNPNQRLPKVEILRSAIRYIERLQA  170 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcC------CCccccccHHHHHHHHHHHHHHHHH
Confidence            34444468899999999999999987322      1234799999999999999999874

>KOG4029|consensus

Probab=95.26  E-value=0.0063  Score=52.75  Aligned_cols=52  Identities=25%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          37 PMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        37 pl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ...||.|=.-+|..+.+|+.+||.....    ..||-|.|+|..||+||+.|+.--
T Consensus       114 n~RER~Rv~~vN~~f~~Lr~~lP~~~~~----~kklSKveTLr~A~~YI~~L~~lL  165 (228)
T KOG4029|consen  114 NARERQRVQSVNSAFAELRALLPTEPPQ----SKKLSKVETLRLATSYIRYLTKLL  165 (228)
T ss_pred             hhhhhhcccchhhhhHHHHhcCCCCCCc----ccccCcccchHHHHHHHHHHHHHh
Confidence            3458888888999999999999988531    389999999999999999998654

>KOG3558|consensus

Probab=94.83  E-value=0.021  Score=57.60  Aligned_cols=79  Identities=27%  Similarity=0.345  Sum_probs=52.1

Q ss_pred             hhhccccccccccccccCccchh-------hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHH
Q psy3614           6 HENQINMINNTVDIEQLQPISRT-------YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADIL   78 (209)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~s~t-------~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdIL   78 (209)
                      ++|.+..+.-.+..+..-..++.       ...||..-.-..|=||-+=|.-+.||+.+||-.    ....+.||||.|+
T Consensus        13 ~~~~~~~~~~~~~~d~~ps~~~r~~~~~~~~~~rkEkSRdAARsRRsKEn~~FyeLa~~lPlp----~aisshLDkaSim   88 (768)
T KOG3558|consen   13 EENSTSLIHFSINQDKKPSLSERHPNRPRLQELRKEKSRDAARSRRSKENEEFYELAKLLPLP----AAISSHLDKASIM   88 (768)
T ss_pred             cccccccccccchhhhCcchhhccCcchhHHHHHhhhhhhhhhhhcccchHHHHHHHHhCCCc----chhhhhhhhHHHH
Confidence            44555555555554422111111       134444444555668999999999999999842    2234899999999


Q ss_pred             HHHHHHHHHH
Q psy3614          79 ELTVQHLQKM   88 (209)
Q Consensus        79 E~TV~yLk~L   88 (209)
                      .+||.|||.-
T Consensus        89 RLtISyLRlr   98 (768)
T KOG3558|consen   89 RLTISYLRLR   98 (768)
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>PLN03217 transcription factor ATBS1; Provisional

Probab=94.41  E-value=0.092  Score=40.52  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          45 ARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        45 ~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      |-||+-+..|+.|||+...  +.+..|+.-+.+|..|..|++.|++.
T Consensus        20 dqi~dLvsKLq~llPe~r~--~r~s~k~saskvLqEtC~YIrsLhrE   64 (93)
T PLN03217         20 DQINDLIIKLQQLLPELRD--SRRSDKVSAARVLQDTCNYIRNLHRE   64 (93)
T ss_pred             HHHHHHHHHHHHHChHHHh--hhccccccHHHHHHHHHHHHHHHHHH
Confidence            7799999999999999854  23348999999999999999999864

>KOG3910|consensus

Probab=91.57  E-value=0.37  Score=47.47  Aligned_cols=62  Identities=26%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhc
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRL   94 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~   94 (209)
                      ++.||+....-||-|=.-||+.|.||.+|.-.+++.|...    .|.-||.++|..|-.|.+|.+.
T Consensus       523 EkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQ----TKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  523 EKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQ----TKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             HHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcc----hhhhHHHHHHHHHHHHHHHHHH
Confidence            3455555556666666669999999999999988765443    6778999999999999888753

>KOG3559|consensus

Probab=87.11  E-value=0.46  Score=46.08  Aligned_cols=45  Identities=36%  Similarity=0.403  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Q psy3614          39 LERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQK   87 (209)
Q Consensus        39 ~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~   87 (209)
                      -.|.||+.=|-.+-||..|||-+...    .+.+|||.|..+|-.|||.
T Consensus         8 aA~tRRekEN~EF~eLAklLPLa~AI----tsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen    8 AARTRREKENYEFYELAKLLPLASAI----TSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             HHHHHHHhhcchHHHHHhhccchhhh----hhccchhhhhhHHHHHHHH
Confidence            45779999999999999999987442    2679999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	1e-07
1a0a_A	63	BHLH, protein (phosphate system positive regulator	8e-07
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	8e-07
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	2e-06
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	3e-06
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	3e-05
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	5e-05
2db7_A	64	Hairy/enhancer-OF-split related with YRPW motif 1;	9e-05
4f3l_A	361	Mclock, circadian locomoter output cycles protein	4e-04

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ 92
           +ER+RR +IN  + +L  ++  +        S   K  IL     ++Q++R+  
Sbjct: 11 EVERRRRDKINNWIVQLSKIIPDSSME--STKSGQSKGGILSKASDYIQELRQSN 63

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63

 Score = 44.0 bits (104), Expect = 8e-07
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 40 ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
          E+ RR R+   L EL  L+    + +    +   KA  +E   ++++ +++ 
Sbjct: 10 EQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQN 60

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 40  ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPV 99
           E++RR ++N  +DEL  L    +        KL+K  +L + VQH+    +  R A+NP 
Sbjct: 21  EKRRRDKMNSFIDELASL----VPTCNAMSRKLDKLTVLRMAVQHM----KTLRGATNPY 72

Query: 100 TDAD 103
           T+A+
Sbjct: 73  TEAN 76

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
           LERKRR  I      L+D  V +LQ E     K  +A IL+   +++Q MRR+  
Sbjct: 18 ALERKRRDHIKDSFHSLRDS-VPSLQGE-----KASRAQILDKATEYIQYMRRKNH 67

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
          +LER+RR  + R    L+D +        EN  K  K  IL+    ++  ++ +++
Sbjct: 12 VLERQRRNELKRSFFALRDQIPE-----LENNEKAPKVVILKKATAYILSVQAEEQ 62

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
           LERKRR  I      L+D  V +LQ E     K  +A IL+   +++Q MRR+  
Sbjct: 8  ALERKRRDHIKDSFHSLRDS-VPSLQGE-----KASRAQILDKATEYIQYMRRKNH 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 43/249 (17%), Positives = 78/249 (31%), Gaps = 72/249 (28%)

Query: 1   MENMIHENQINMIN-NTVD--IEQLQPISRTYQYRKVMKPMLERKRRA-----RINRCLD 52
           M+  I    +N+ N N+ +  +E LQ +       ++      R   +     RI+    
Sbjct: 180 MDFKIF--WLNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 53  ELKDLMVTALQAEG----ENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDA------ 102
           EL+ L+ +           NV   +  +   L+ + L   R +Q      VTD       
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ------VTDFLSAATT 286

Query: 103 -----DRFRAGFTTCANE--VSKCLASTPGIDLRLGTKLMSHLGQRLNEMDKISPLSVRV 155
                D      T    +  + K L   P  DL               E+   +P  + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLP-------------REVLTTNPRRLSI 332

Query: 156 M------DVCTPPPSPHSDTYSMPLTPASSGSSQVDTCDYTSQYKMYESMPS--PKSVWR 207
           +       + T     H +   +     SS    ++  +     KM++ + S  P S   
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESS----LNVLEPAEYRKMFDRL-SVFPPSAHI 387

Query: 208 P-------W 209
           P       W
Sbjct: 388 PTILLSLIW 396

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
           +E+ RRA +   L++LK L+       G + S+     +L     H++K+    R
Sbjct: 7  EMEKNRRAHLRLSLEKLKGLV-----PLGPDSSRHTTLSLLTKAKLHIKKLEDSDR 57

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
           +E++ R+ IN  + ELKDL V   +      +KL K+ +L   + +++ ++   +
Sbjct: 12 AIEKRYRSSINDKIIELKDL-VVGTE------AKLNKSAVLRKAIDYIRFLQHSNQ 60

>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1 Length = 64

 Score = 38.5 bits (89), Expect = 9e-05
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 97  NPVTDADRFRA-GFTTCANEVSKCLASTPGIDLR--LGTKLMSHLGQRLNEMD 146
           +    A  +R+ GF  C  EV++ L+   G+D    L  +L+SHL    ++ +
Sbjct: 11  DAHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQRE 63

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 40  ERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPV 99
           E+KRR + N  + EL  +    L     N  K++K+ +L+ ++  L +  ++    S+  
Sbjct: 20  EKKRRDQFNVLIKELGSM----LPG---NARKMDKSTVLQKSIDFL-RKHKETTAQSDAS 71

Query: 100 TDADRFRAGFTTCANEVSKCLASTPG 125
                ++  F +        L +  G
Sbjct: 72  EIRQDWKPTFLSNEEFTQLMLEALDG 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.68
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.68
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.55
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.45
2db7_A	64	Hairy/enhancer-OF-split related with YRPW motif 1;	99.4
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.36
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.35
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.21
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.2
4f3l_A	361	Mclock, circadian locomoter output cycles protein	99.15
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	99.14
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.01
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	98.99
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	98.74
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	98.53
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	98.5
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.42
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.0
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.79

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.68  E-value=9.7e-18  Score=119.00  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=54.0

Q ss_pred             hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ||.+|+++||+||+|||.+|++|+.|||.++..++. .+|++||+|||+||+||+.|+.+.
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~-~~k~sKa~iL~~Ai~YIk~Lq~~~   61 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNV-SAAPSKATTVEAACRYIRHLQQNG   61 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSC-CCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCccccccc-CCcccHHHHHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999999876532 489999999999999999998653

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.68  E-value=2e-17  Score=120.73  Aligned_cols=57  Identities=30%  Similarity=0.525  Sum_probs=51.4

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR   90 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~   90 (209)
                      ..||..|+++|||||+|||.+|++|+.|||.+..    ..+|+|||+||++||+||+.|+.
T Consensus         7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~----~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNA----MSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHT----CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHcccccc----ccccccHHHHHHHHHHHHHHHhc
Confidence            4678899999999999999999999999999852    24899999999999999999873

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.55  E-value=1.1e-15  Score=111.25  Aligned_cols=56  Identities=25%  Similarity=0.458  Sum_probs=50.3

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ..+|..+.++|||||++||.+|.+|+.|||.       ...|+||++||++||+||+.|+...
T Consensus         6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~-------~~~K~dK~sIL~~aI~yik~Lq~~~   61 (71)
T 4h10_B            6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKEIT   61 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-------CCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC-------CCCCCcHHHHHHHHHHHHHHHHHhh
Confidence            4578889999999999999999999999993       2379999999999999999998764

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.45  E-value=2.8e-15  Score=105.77  Aligned_cols=60  Identities=23%  Similarity=0.362  Sum_probs=51.5

Q ss_pred             hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      .||..|.++||+||++||.+|.+|+.|||.+...  ....|++||+||++||+||+.|+.+.
T Consensus         4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~--~~~~k~~Ka~IL~~ai~YI~~Lq~~~   63 (65)
T 1an4_A            4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSME--STKSGQSKGGILSKASDYIQELRQSN   63 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCC--SSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccc--cccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            4788999999999999999999999999987321  11258999999999999999998653

>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1

Probab=99.40  E-value=1.4e-13  Score=98.38  Aligned_cols=46  Identities=33%  Similarity=0.604  Sum_probs=41.5

Q ss_pred             HHhhhh-hHHHHHHHHHhhhccCCCCChH--HHHHHHHHHHhhhccccc
Q psy3614         102 ADRFRA-GFTTCANEVSKCLASTPGIDLR--LGTKLMSHLGQRLNEMDK  147 (209)
Q Consensus       102 ~~~fra-Gf~~C~~EVsrfLs~~~gvd~~--~~~rLlsHL~~~l~~~~~  147 (209)
                      +++|++ ||++|++||+|||+.++|+|+.  ++.|||+||+++++++++
T Consensus        16 ~~~yrs~Gf~eC~~EV~rfLs~~eg~d~~d~~r~rLl~HL~~~~~~~e~   64 (64)
T 2db7_A           16 AMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQREA   64 (64)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHhhccCC
Confidence            578995 9999999999999999999987  999999999999998763

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.36  E-value=3.3e-13  Score=99.66  Aligned_cols=56  Identities=25%  Similarity=0.413  Sum_probs=51.0

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ..||..|.++||+||++||++|.+|+.|||..       ..|++||+||+.||+||+.|+.+.
T Consensus         4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-------~~k~~Ka~IL~~Ai~YI~~Lq~~~   59 (82)
T 1am9_A            4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSN   59 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            45888999999999999999999999999963       289999999999999999998765

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.35  E-value=2.8e-13  Score=106.44  Aligned_cols=60  Identities=28%  Similarity=0.421  Sum_probs=46.6

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ...+|..|.++||+||++||++|.+|+.|||.+.+.    ..|++||+||++||+||+.|+.+.
T Consensus        24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~----~~k~~Ka~IL~~aieYIk~Lq~~~   83 (118)
T 4ati_A           24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDP----DMRWNKGTILKASVDYIRKLQREQ   83 (118)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHSCCC--------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCc----cccCCHHHHHHHHHHHHHHHHHHH
Confidence            446889999999999999999999999999987432    379999999999999999998754

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.21  E-value=4.6e-12  Score=92.71  Aligned_cols=58  Identities=29%  Similarity=0.407  Sum_probs=51.8

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ...+|..|...||+||+.||.+|++|+.+||...      ..|++|++||..||+||+.|+...
T Consensus         9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~   66 (80)
T 1hlo_A            9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN   66 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCC------CCCccHHHHHHHHHHHHHHHHHHH
Confidence            3568889999999999999999999999999763      279999999999999999998654

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.20  E-value=3.2e-12  Score=93.95  Aligned_cols=55  Identities=31%  Similarity=0.465  Sum_probs=49.8

Q ss_pred             hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ||..|...||+||+.||.+|++|+.+||...      ..|++|++||..||+||+.|+.+.
T Consensus         2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~------~~k~sK~~iL~~Ai~YI~~L~~~~   56 (83)
T 1nkp_B            2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN   56 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999999762      279999999999999999998654

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.15  E-value=1.1e-11  Score=110.19  Aligned_cols=56  Identities=25%  Similarity=0.469  Sum_probs=42.6

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ..+|..+.++|||||+|||..|.+|+.|||.       ..+|||||+||++||.|||.++...
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-------~~~~~dk~~il~~~~~~~~~~~~~~   65 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-------NARKMDKSTVLQKSIDFLRKHKETT   65 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCCS-------SSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-------CCCCcCHHHHHHHHHHHHHHHHhhc
Confidence            4567788999999999999999999999991       2389999999999999999987643

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=99.14  E-value=2.1e-11  Score=109.84  Aligned_cols=58  Identities=29%  Similarity=0.516  Sum_probs=51.2

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      ..+|.+|.++|||||+|||..|.+|+.|||.+-    ...+||||+.||++||.|||.|+..
T Consensus        11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~----~~~~k~dk~~il~~~~~~l~~~~~~   68 (387)
T 4f3l_B           11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCN----AMSRKLDKLTVLRMAVQHMKTLRGA   68 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH----HCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccchhhcchHHHHHHHHHHHHhcCCCC----ccccccCHHHHHHHHHHHHHHhhcc
Confidence            456778899999999999999999999999873    2348999999999999999999843

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.01  E-value=4.4e-10  Score=82.31  Aligned_cols=59  Identities=32%  Similarity=0.398  Sum_probs=46.6

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchh-hHHHHHHHHHHHHHHHHHhhh
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKL-EKADILELTVQHLQKMRRQQR   93 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KL-EKAdILE~TV~yLk~Lq~~~~   93 (209)
                      ..||..+...||+||+.||+++++|+.+||.+...     .|. .|++||..||+|++.|+++..
T Consensus         3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~-----~K~~sK~~IL~~AieYI~~Lq~~l~   62 (76)
T 3u5v_A            3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKS-----DKAQTKLLILQQAVQVILGLEQQVR   62 (76)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCc-----cccccHHHHHHHHHHHHHHHHHHHH
Confidence            35788899999999999999999999999976421     344 799999999999999998764

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=98.99  E-value=1.4e-10  Score=86.82  Aligned_cols=57  Identities=23%  Similarity=0.322  Sum_probs=50.8

Q ss_pred             hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      .++..|..+||+||+.||++|..|+.+||...     ...|++|++||..|++|++.|+.+.
T Consensus         5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~-----~~~K~sK~~iL~~A~~YI~~L~~~~   61 (88)
T 1nkp_A            5 VKRRTHNVLERQRRNELKRSFFALRDQIPELE-----NNEKAPKVVILKKATAYILSVQAEE   61 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGT-----TCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            47788899999999999999999999999762     2379999999999999999998765

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=98.74  E-value=2.3e-09  Score=79.06  Aligned_cols=55  Identities=22%  Similarity=0.381  Sum_probs=47.6

Q ss_pred             hccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          33 KVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        33 K~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      +..|..+||+||+.||.||+.|+.+||..     ....|+.|++||..|++|++.|+...
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~-----~~~~k~sk~~iL~kA~~yI~~L~~~~   56 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLG-----PDSSRHTTLSLLTKAKLHIKKLEDSD   56 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCC-----SSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            34567899999999999999999999964     23488999999999999999998764

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=98.53  E-value=1.7e-08  Score=72.45  Aligned_cols=57  Identities=21%  Similarity=0.346  Sum_probs=49.5

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      ...|+..+...|++|+..||+.|+.|+.+||..    +  ..||.|++||..+++|+..|+..
T Consensus         9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~----~--~~KlSKi~tLr~Ai~YI~~L~~~   65 (68)
T 1mdy_A            9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSN----P--NQRLPKVEILRNAIRYIEGLQAL   65 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSC----T--TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCC----C--CCCCCHHHHHHHHHHHHHHHHHH
Confidence            346677788999999999999999999999953    1  37999999999999999999864

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=98.50  E-value=3.5e-08  Score=69.13  Aligned_cols=55  Identities=24%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      |+.....-|++|+.-||..++.|+.+||..     ....||.|.+||.+++.|+..|+..
T Consensus         2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~-----~~~~klSKi~tLr~Ai~YI~~L~~~   56 (60)
T 2ql2_B            2 RRMKANARERNRMHGLNAALDNLRKVVPCY-----SKTQKLSKIETLRLAKNYIWALSEI   56 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSC-----CSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHccCC-----CCcCcCCHHHHHHHHHHHHHHHHHH
Confidence            344566889999999999999999999965     2248999999999999999999864

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.42  E-value=3.2e-08  Score=71.41  Aligned_cols=48  Identities=15%  Similarity=0.270  Sum_probs=42.1

Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Q psy3614          38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRR   90 (209)
Q Consensus        38 l~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~   90 (209)
                      .-||+|+..||++|+.|+.+||...     ...||.|.+||.++++|+..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p-----~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVP-----RGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCC-----TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCccHHHHHHHHHHHHHHHHc
Confidence            4578888999999999999999852     34899999999999999999974

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.00  E-value=2.5e-06  Score=63.62  Aligned_cols=45  Identities=29%  Similarity=0.426  Sum_probs=39.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          44 RARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        44 R~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      |.-||+.+.+|..|||.+.    ....|..|+.||..||+|++.|++..
T Consensus         4 R~nIN~~I~EL~~LiP~~~----~~~~k~nKg~IL~ksvdYI~~Lq~e~   48 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSN----DPDMRWNKGTILKASVDYIRKLQREQ   48 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCC----CTTCCCSHHHHHHHHHHHHHHHHHTH
T ss_pred             hhhHHHhhhhhhccCCCCC----CcccCcchHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999862    23489999999999999999998643

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.79  E-value=1.7e-05  Score=60.62  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=41.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhhhccCCCcccHHhhhhhHH
Q psy3614          42 KRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQRLASNPVTDADRFRAGFT  110 (209)
Q Consensus        42 rRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~~~~~~~~~~~~~fraGf~  110 (209)
                      .|=.-||++|+.|+.+||...     ...||.|.|||.+++.|++.|+..-.....+   ...|.+||.
T Consensus        35 ~Rm~~lN~AF~~LR~~vP~~p-----~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~---~~~~~~g~~   95 (97)
T 4aya_A           35 SLLYNMNDCYSKLKELVPSIP-----QNKKVSKMEILQHVIDYILDLQIALDSHLKP---SFLVQSGDI   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSC-----SSSCCCHHHHHHHHHHHHHHHHHHHHTTTST---TCC------
T ss_pred             HHHHHHHHHHHHHHHHCCCCC-----CCCcccHHHHHHHHHHHHHHHHHHHhcCCCC---cchhhcCcc
Confidence            344559999999999999751     3489999999999999999998755332221   224777875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	209
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	4e-11
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	6e-10
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	1e-07
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	8e-07
d2db7a1	55	a.273.1.1 (A:3-57) Hairy/enhancer-of-split related	8e-07
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	2e-06
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	2e-05
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	4e-05

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (131), Expect = 4e-11
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMR 89
          + R+     +ER+RR +IN  + +L  ++  +     +  S   K  IL     ++Q++R
Sbjct: 3  EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTK--SGQSKGGILSKASDYIQELR 60

Query: 90 RQQR 93
          +   
Sbjct: 61 QSNH 64

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (123), Expect = 6e-10
 Identities = 11/60 (18%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
          ++      E+ RR R+   L EL  L+    + +  + +   KA  +E   ++++ +++ 
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVS-AAPSKATTVEAACRYIRHLQQN 60

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
          ++     LERKRR  I      L+D +            K  +A IL+   +++Q MRR+
Sbjct: 2  KRAHHNALERKRRDHIKDSFHSLRDSV------PSLQGEKASRAQILDKATEYIQYMRRK 55

Query: 92 QR 93
            
Sbjct: 56 NH 57

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 8e-07
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
          ++     +E++ R+ IN  + ELKDL+V          +KL K+ +L   + +++ ++  
Sbjct: 6  KRTAHNAIEKRYRSSINDKIIELKDLVVG-------TEAKLNKSAVLRKAIDYIRFLQHS 58

Query: 92 QR 93
           +
Sbjct: 59 NQ 60

>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Orange domain-like
superfamily: Orange domain-like
family: Hairy Orange domain
domain: Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 8e-07
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 98  PVTDADRFRA-GFTTCANEVSKCLASTPGIDLRLGTK--LMSHLGQRLNE 144
               A  +R+ GF  C  EV++ L+   G+D     +  L+SHL    ++
Sbjct: 5   AHALAMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ 54

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 38 MLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQR 93
           +E+ RRA +   L++LK L+       G + S+     +L     H++K+    R
Sbjct: 7  EMEKNRRAHLRLSLEKLKGLVPL-----GPDSSRHTTLSLLTKAKLHIKKLEDSDR 57

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
          R+    M ER+R +++N   + LK    +          +L K +IL   +++++ ++  
Sbjct: 12 RRKAATMRERRRLSKVNEAFETLKRSTSSN------PNQRLPKVEILRNAIRYIEGLQAL 65

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ 91
          ++    +LER+RR  + R    L+D +      E EN  K  K  IL+    ++  ++ +
Sbjct: 6  KRRTHNVLERQRRNELKRSFFALRDQI-----PELENNEKAPKVVILKKATAYILSVQAE 60

Query: 92 QR 93
          ++
Sbjct: 61 EQ 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	209
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.58
d2db7a1	55	Hairy/enhancer-of-split related with YRPW motif pr	99.43
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.36
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.26
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.17
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.6

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.8e-16  Score=109.08  Aligned_cols=59  Identities=19%  Similarity=0.313  Sum_probs=53.0

Q ss_pred             hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      ||..|.++||+||++||.+|++|+.|||.+...++ ...|++||+||++||+|++.|+.+
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~-~~~k~sKa~iL~~Av~yI~~Lq~~   60 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQN-VSAAPSKATTVEAACRYIRHLQQN   60 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSS-CCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccC-CcccccHHHHHHHHHHHHHHHHHh
Confidence            67889999999999999999999999999876554 348999999999999999999864

>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Orange domain-like
superfamily: Orange domain-like
family: Hairy Orange domain
domain: Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.4e-14  Score=97.17  Aligned_cols=43  Identities=35%  Similarity=0.641  Sum_probs=39.9

Q ss_pred             HHhhhh-hHHHHHHHHHhhhccCCCCChH--HHHHHHHHHHhhhcc
Q psy3614         102 ADRFRA-GFTTCANEVSKCLASTPGIDLR--LGTKLMSHLGQRLNE  144 (209)
Q Consensus       102 ~~~fra-Gf~~C~~EVsrfLs~~~gvd~~--~~~rLlsHL~~~l~~  144 (209)
                      +.+|++ ||++|+.||+|||++++|+|++  ++.|||+||+.|+++
T Consensus         9 a~~yra~GF~ECa~EV~RyL~~~eg~d~~d~~r~RLl~HL~~C~~q   54 (55)
T d2db7a1           9 AMDYRSLGFRECLAEVARYLSIIEGLDASDPLRVRLVSHLNNYASQ   54 (55)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHhc
Confidence            358998 9999999999999999999887  999999999999876

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-14  Score=101.32  Aligned_cols=59  Identities=24%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             hhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          31 YRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        31 ~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      .||..|..+||+||++||.+|++|+.|||......  ...|++||+||++||+||+.|+.+
T Consensus         4 ~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~--~~~k~sK~~iL~~av~yI~~Lq~~   62 (65)
T d1an4a_           4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMES--TKSGQSKGGILSKASDYIQELRQS   62 (65)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCS--STTCCCTTTTTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccC--CCCCCCHHHHHHHHHHHHHHHHHh
Confidence            46788999999999999999999999999764322  347999999999999999999864

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.2e-13  Score=97.18  Aligned_cols=57  Identities=25%  Similarity=0.395  Sum_probs=50.7

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ...||..|..+||+||++||++|++|+.|||..       ..|++|++||+.||+||+.|+.+.
T Consensus         3 ~~~kR~~H~~~Er~RR~~in~~~~~L~~llP~~-------~~k~~K~~iL~~a~~yI~~L~~~~   59 (80)
T d1am9a_           3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-------EAKLNKSAVLRKAIDYIRFLQHSN   59 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-------SCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999953       379999999999999999998654

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.8e-13  Score=94.52  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=50.3

Q ss_pred             hhhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHh
Q psy3614          29 YQYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQ   91 (209)
Q Consensus        29 ~~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~   91 (209)
                      ...||..+...||+||++||++|++|+.|||.+.      ..|++|++||++||+||+.|+..
T Consensus         9 ~~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~------~~k~sK~~iL~~Ai~YI~~Lq~~   65 (68)
T d1mdya_           9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNP------NQRLPKVEILRNAIRYIEGLQAL   65 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCT------TSCCCHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCCCCHHHHHHHHHHHHHHHHHH
Confidence            3467778899999999999999999999999752      26899999999999999999864

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.2e-12  Score=94.38  Aligned_cols=55  Identities=31%  Similarity=0.465  Sum_probs=49.3

Q ss_pred             hhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          32 RKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        32 RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ||..|...||+||++||++|++|++|||...      ..|++|++||+.||.||+.|+.+.
T Consensus         2 rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~------~~k~sK~~iL~~A~~yI~~L~~~~   56 (83)
T d1nkpb_           2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQ------GEKASRAQILDKATEYIQYMRRKN   56 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGT------TSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999651      269999999999999999998654

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.4e-12  Score=91.97  Aligned_cols=54  Identities=22%  Similarity=0.372  Sum_probs=47.1

Q ss_pred             ccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          34 VMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        34 ~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ..|..+||+||++||.+|++|+.|||..     ....|++|++||+.||+|++.|+...
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~-----~~~~k~sK~~iL~~A~~yI~~L~~~~   56 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLG-----PDSSRHTTLSLLTKAKLHIKKLEDSD   56 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCC-----SSSCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccC-----CCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4577899999999999999999999854     22379999999999999999998654

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.8e-12  Score=92.53  Aligned_cols=58  Identities=22%  Similarity=0.320  Sum_probs=50.7

Q ss_pred             hhhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          30 QYRKVMKPMLERKRRARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        30 ~~RK~~Kpl~EKrRR~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      ..||..|..+||+||++||++|++|+.|||...     ...|++|++||+.||+||+.|+...
T Consensus         4 ~~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~-----~~~k~sK~~iL~~A~~yI~~L~~~~   61 (88)
T d1nkpa_           4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELE-----NNEKAPKVVILKKATAYILSVQAEE   61 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGT-----TCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----CCCccCHHHHHHHHHHHHHHHHHHH
Confidence            357788999999999999999999999999652     2378999999999999999998654

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.8e-09  Score=72.85  Aligned_cols=42  Identities=26%  Similarity=0.442  Sum_probs=38.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHhh
Q psy3614          44 RARINRCLDELKDLMVTALQAEGENVSKLEKADILELTVQHLQKMRRQQ   92 (209)
Q Consensus        44 R~RIN~~L~eLk~Llp~~~~~~~~~~~KLEKAdILE~TV~yLk~Lq~~~   92 (209)
                      |++||+.+..|+.|||.+       ..|++||+||+.||+|++.|+.+.
T Consensus         1 R~~in~~f~~L~~lvP~~-------~~K~~Ka~iL~~Ai~YI~~Lq~~~   42 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGT-------DAKMHKSGVLRKAIDYIKYLQQVN   42 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCS-------SCCCCTTTHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCC-------CCcccHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999954       269999999999999999998765