Psyllid ID: psy3615

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
Protein Sequence
MAAGTEGLKSPSQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEcccccccccccccccccccccHHHccEEHHHHHHHEEEEcccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
maagteglkspsqspislssrgvlfqqdgdsgslfhwdsnvqnlVLGSFFWlhwstqipggvlarslgtkvVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLvahwipptersqFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVydtpdqhprvsaEEKEYIQQALGNTVSAKK
Flexible Loop (DISEMBL)
maagteglkspsqspiSLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQAlgntvsakk
Low Complexity Region (SEG)
MAAGTEGLKspsqspislssRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGvvwwvvwmivvYDTPDQHPRVSAEEKEYIQQALGNTVSAKK
Disordered region (IsUnstruct)
******************************SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT***************************
Disordered Region (DISOPRED)
*************SPISLS************GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKE**************
Disordered Region (DISEMBL)
*****************LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAKK
Disordered Region (DISPRO)
****TEGLKSPSQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGN******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAGTEGLKSPSQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	211	2.2.26 [Sep-21-2011]
Q9JI12	582	Vesicular glutamate trans	yes	N/A	0.824	0.298	0.371	4e-35
Q8BLE7	582	Vesicular glutamate trans	yes	N/A	0.824	0.298	0.371	5e-35
Q9P2U8	582	Vesicular glutamate trans	yes	N/A	0.824	0.298	0.371	5e-35
A6QLI1	582	Vesicular glutamate trans	yes	N/A	0.824	0.298	0.365	7e-35
Q5W8I8	584	Vesicular glutamate trans	yes	N/A	0.900	0.325	0.346	1e-34
Q6INC8	576	Vesicular glutamate trans	N/A	N/A	0.815	0.298	0.364	1e-34
A4FV52	560	Vesicular glutamate trans	no	N/A	0.815	0.307	0.375	3e-34
Q3TXX4	560	Vesicular glutamate trans	no	N/A	0.815	0.307	0.375	4e-34
Q1L8X9	590	Vesicular glutamate trans	no	N/A	0.810	0.289	0.360	4e-34
Q62634	560	Vesicular glutamate trans	no	N/A	0.815	0.307	0.375	4e-34

>sp|Q9JI12|VGLU2_RAT Vesicular glutamate transporter 2 OS=Rattus norvegicus GN=Slc17a6 PE=1 SV=1

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct: 117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   TS+ GS  G  ++ PL G++
Sbjct: 177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVS 208
           +   GW + FYV G+ G+VW++ W++V Y++P +HP ++ EE+ YI++++G + +
Sbjct: 237 VQYTGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also play a role in the endocrine glutamatergic system of other tissues such as pineal gland and pancreas. May also mediate the transport of inorganic phosphate.
Rattus norvegicus (taxid: 10116)

>sp|Q8BLE7|VGLU2_MOUSE Vesicular glutamate transporter 2 OS=Mus musculus GN=Slc17a6 PE=1 SV=1

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct: 117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   TS+ GS  G  ++ PL G++
Sbjct: 177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVS 208
           +   GW + FYV G+ G+VW++ W++V Y++P +HP ++ EE+ YI++++G + +
Sbjct: 237 VQYTGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Mus musculus (taxid: 10090)

>sp|Q9P2U8|VGLU2_HUMAN Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=1 SV=1

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 65/175 (37%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct: 117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   TS+ GS  G  ++ PL G++
Sbjct: 177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVS 208
           +   GW + FYV G+ G+VW++ W++V Y++P +HP ++ EE+ YI++++G + +
Sbjct: 237 VQYTGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Homo sapiens (taxid: 9606)

>sp|A6QLI1|VGLU2_BOVIN Vesicular glutamate transporter 2 OS=Bos taurus GN=SLC17A6 PE=2 SV=1

 Score =  147 bits (370), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 64/175 (36%), Positives = 111/175 (63%), Gaps = 1/175 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct: 117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   TS+ GS  G  ++ PL G++
Sbjct: 177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVS 208
           +   GW + FYV G+ G++W++ W++V Y++P +HP ++ EE+ YI++++G + +
Sbjct: 237 VQYTGWSSVFYVYGSFGMIWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Bos taurus (taxid: 9913)

>sp|Q5W8I8|VGL2A_DANRE Vesicular glutamate transporter 2.1 OS=Danio rerio GN=slc17a6b PE=2 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 120/196 (61%), Gaps = 6/196 (3%)

Query: 12  SQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKV 71
           + S I L+ + ++ ++     + F+WD     L+ GSFFW +  TQIPGG ++  L    
Sbjct: 99  NNSTIHLNGKIIIKEK-----AKFNWDPETVGLIHGSFFWGYIVTQIPGGYISSRLAANR 153

Query: 72  VFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQ 131
           VFG + L    ++  +P+AA   Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+
Sbjct: 154 VFGAAILLTSTLNMFIPSAARGHYGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSR 213

Query: 132 F-ITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPR 190
              TS+ GS  G  ++ PL G+++   GW + FYV G  G+ W++ W++V Y++P +HP 
Sbjct: 214 LATTSFCGSYAGAVIAMPLAGILVQYTGWSSVFYVYGCFGIFWYMFWILVSYESPAEHPT 273

Query: 191 VSAEEKEYIQQALGNT 206
           ++AEE+ YI++++G +
Sbjct: 274 ITAEERCYIEESIGES 289

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. Required for glutamate release by retinotectal synapses and visual acuity.

Danio rerio (taxid: 7955)

>sp|Q6INC8|VGLU1_XENLA Vesicular glutamate transporter 1 OS=Xenopus laevis GN=slc17a7 PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 110/173 (63%), Gaps = 1/173 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     ++ GSFFW +  TQIPGG + +      VFG + +A   ++  +P+AA   
Sbjct: 109 FNWDPETVGMIHGSFFWGYIVTQIPGGYICQKFAANRVFGFAIVATSTLNMLIPSAARVH 168

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           +  +  +RI+QG++ G+ +P+ H + + W PP ERS+   T++ GS  G  ++ PL GV+
Sbjct: 169 FACVICVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVL 228

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNT 206
           +   GW + FYV G+ G+ W++ W++V Y++P QHP +S EE++YI++++G +
Sbjct: 229 VQYSGWSSVFYVYGSFGITWYMFWILVSYESPAQHPTISEEERKYIEESIGES 281

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus laevis (taxid: 8355)

>sp|A4FV52|VGLU1_BOVIN Vesicular glutamate transporter 1 OS=Bos taurus GN=SLC17A7 PE=2 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 108/173 (62%), Gaps = 1/173 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     L+ GSFFW +  TQIPGG + +      VFG + +A   ++  +P+AA   
Sbjct: 109 FNWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVH 168

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   T++ GS  G  ++ PL GV+
Sbjct: 169 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVL 228

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNT 206
           +   GW + FYV G+ G+ W++ W++V Y++P  HP +S EE++YI+ A+G +
Sbjct: 229 VQYSGWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGES 281

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Bos taurus (taxid: 9913)

>sp|Q3TXX4|VGLU1_MOUSE Vesicular glutamate transporter 1 OS=Mus musculus GN=Slc17a7 PE=2 SV=2

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 108/173 (62%), Gaps = 1/173 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     L+ GSFFW +  TQIPGG + +      VFG + +A   ++  +P+AA   
Sbjct: 109 FNWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVH 168

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   T++ GS  G  ++ PL GV+
Sbjct: 169 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVL 228

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNT 206
           +   GW + FYV G+ G+ W++ W++V Y++P  HP +S EE++YI+ A+G +
Sbjct: 229 VQYSGWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGES 281

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Mus musculus (taxid: 10090)

>sp|Q1L8X9|VGLU3_DANRE Vesicular glutamate transporter 3 OS=Danio rerio GN=slc17a8 PE=3 SV=2

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     L+ GSFFW +  TQIPGG ++  L    VFG +     +++  +P+AA   
Sbjct: 122 FNWDPETVGLIHGSFFWGYIVTQIPGGFISNKLAANRVFGAAIFLTSVLNMFIPSAARVH 181

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   TS+ GS  G  ++ PL G++
Sbjct: 182 YGCVMFVRILQGLVEGVTYPACHGMWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 241

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGN 205
           +  +GW + FY+ G  G++W++ W+++ Y++P  HP +S EE+ YI+ ++G 
Sbjct: 242 VQYVGWPSVFYIYGVFGIIWYIFWILLAYNSPAVHPTISEEERNYIETSIGE 293

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Danio rerio (taxid: 7955)

>sp|Q62634|VGLU1_RAT Vesicular glutamate transporter 1 OS=Rattus norvegicus GN=Slc17a7 PE=1 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/173 (37%), Positives = 108/173 (62%), Gaps = 1/173 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F+WD     L+ GSFFW +  TQIPGG + +      VFG + +A   ++  +P+AA   
Sbjct: 109 FNWDPETVGLIHGSFFWGYIVTQIPGGFICQKFAANRVFGFAIVATSTLNMLIPSAARVH 168

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF-ITSYLGSSFGVALSYPLCGVV 153
           Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+   T++ GS  G  ++ PL GV+
Sbjct: 169 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTAFCGSYAGAVVAMPLAGVL 228

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNT 206
           +   GW + FYV G+ G+ W++ W++V Y++P  HP +S EE++YI+ A+G +
Sbjct: 229 VQYSGWSSVFYVYGSFGIFWYLFWLLVSYESPALHPSISEEERKYIEDAIGES 281

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
193697623	474	PREDICTED: sialin-like [Acyrthosiphon pi	0.838	0.373	0.525	7e-54
118789879	490	AGAP011426-PA [Anopheles gambiae str. PE	0.829	0.357	0.531	9e-54
170048007	540	sodium-dependent phosphate transporter [	0.857	0.335	0.521	2e-53
312378098	571	hypothetical protein AND_10427 [Anophele	0.824	0.304	0.513	3e-53
193788546	533	Na[+]-dependent inorganic phosphate cotr	0.824	0.326	0.505	3e-53
157136240	517	sodium-dependent phosphate transporter [	0.838	0.342	0.531	1e-52
91094583	486	PREDICTED: similar to Na[+]-dependent in	0.962	0.417	0.473	1e-52
328780736	455	PREDICTED: vesicular glutamate transport	0.829	0.384	0.522	4e-52
350423826	518	PREDICTED: LOW QUALITY PROTEIN: vesicula	0.966	0.393	0.439	8e-52
340727684	522	PREDICTED: vesicular glutamate transport	0.928	0.375	0.452	2e-51

>gi|193697623|ref|XP_001943734.1| PREDICTED: sialin-like [Acyrthosiphon pisum]

 Score =  215 bits (548), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 131/177 (74%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F W  + +  VLGSF+WLHW+ Q+PGG+LAR  G K +FG+SNL MF++S  +P  A WD
Sbjct: 67  FEWKDSERASVLGSFYWLHWALQLPGGLLARQFGAKRIFGLSNLFMFVMSLLMPVLARWD 126

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVI 154
            K +   R++QG +GG+AWPS+HHL AHW+PP +RS+FIT+YLGSS GVA+++PLCG ++
Sbjct: 127 IKGLIVARVLQGFVGGMAWPSVHHLTAHWVPPNKRSKFITAYLGSSIGVAITFPLCGFIL 186

Query: 155 DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAKK 211
           +  GW   FYVTGA+G++W++ W + VYDTP QHP +S  E  +I  +L + VS+ K
Sbjct: 187 ERWGWPYVFYVTGAIGMMWFLAWWLFVYDTPSQHPYISEVELVHITSSLTDVVSSTK 243

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118789879|ref|XP_317877.3| AGAP011426-PA [Anopheles gambiae str. PEST] gi|116122784|gb|EAA13079.4| AGAP011426-PA [Anopheles gambiae str. PEST]

 Score =  215 bits (548), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 93/175 (53%), Positives = 127/175 (72%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F W+   Q L+LG+F+WLHW TQIPGG+LAR  GTK+VFG SN+    + F +P AAYWD
Sbjct: 51  FDWNDYQQGLILGAFYWLHWITQIPGGILARRYGTKLVFGASNVIGCWMCFLMPIAAYWD 110

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVI 154
           Y+ +  LR++QG+I GLAWP+MHH+   WIPP ERS+F+T+YLGSS GVAL++PL G +I
Sbjct: 111 YRVLVVLRVLQGLICGLAWPAMHHMAGQWIPPNERSKFVTAYLGSSVGVALNFPLFGFII 170

Query: 155 DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSA 209
               WE  ++  G  G VW+V W+  VYD+P +HPR+ A E++YI+ +LG T  +
Sbjct: 171 SWTSWEYVYHFCGIFGTVWYVAWLYFVYDSPAEHPRIHANERKYIESSLGITAQS 225

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170048007|ref|XP_001851492.1| sodium-dependent phosphate transporter [Culex quinquefasciatus] gi|167870243|gb|EDS33626.1| sodium-dependent phosphate transporter [Culex quinquefasciatus]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 133/186 (71%), Gaps = 5/186 (2%)

Query: 26  QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISF 85
           ++DG     F W+   Q LVLG+FFWLHW TQIPGGVLAR  GTK+VFGV+N     + F
Sbjct: 83  KEDG-----FEWNEYEQGLVLGAFFWLHWVTQIPGGVLARKYGTKMVFGVANAIGCWMCF 137

Query: 86  ALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVAL 145
            +P A+Y D + +  LR+VQGVI G+AWP+MHH+   WIPP ERS+FIT+YLGSS GVAL
Sbjct: 138 LMPLASYLDIRILIFLRVVQGVICGVAWPAMHHMAGQWIPPNERSKFITAYLGSSVGVAL 197

Query: 146 SYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGN 205
           ++PL G +I    WE  F+  G  G +W++ W+++VYD+P +HPR+  +E+EYI+ +LG 
Sbjct: 198 NFPLFGYIISWSSWEYVFHFCGIFGTIWYLAWVVLVYDSPAEHPRIHPKEREYIESSLGI 257

Query: 206 TVSAKK 211
           T  +K+
Sbjct: 258 TEKSKE 263

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312378098|gb|EFR24761.1| hypothetical protein AND_10427 [Anopheles darlingi]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 92/179 (51%), Positives = 129/179 (72%), Gaps = 5/179 (2%)

Query: 26  QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISF 85
           Q+DG     F W+   Q ++LG+F+WLHW TQIPGG+LAR  GTK+VFG SN+    + F
Sbjct: 102 QEDG-----FDWNDYQQGIILGAFYWLHWITQIPGGILARRYGTKLVFGASNVIGCWLCF 156

Query: 86  ALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVAL 145
            +P A+YWDY+ +  LR+VQG+I GLAWP+MHH+   WIPP ERS+F+T+YLGSS GVAL
Sbjct: 157 LMPIASYWDYRILVFLRVVQGLICGLAWPAMHHMAGQWIPPNERSKFVTAYLGSSIGVAL 216

Query: 146 SYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALG 204
           ++PL G +I    WE  ++  G  G VW+V W+ +VYD+P +HPR+   E+++I+ +LG
Sbjct: 217 NFPLFGFIIAHTSWEYVYHFCGIFGTVWYVAWLYLVYDSPSEHPRIHPAERKFIESSLG 275

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193788546|ref|NP_001123317.1| Na[+]-dependent inorganic phosphate cotransporter [Nasonia vitripennis]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 127/174 (72%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F W+   Q LVLG+++W+HW +Q+PGG+LAR  GTK+VFG+ NL + L+ F +P A ++ 
Sbjct: 95  FQWNEYQQGLVLGAYYWIHWLSQLPGGLLARKYGTKIVFGMGNLLVALVGFLIPVATHYS 154

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVI 154
             ++  LR++QG   G+ WPSMH + A WIPP ERS+F++SYLGSS G A++YPLC  +I
Sbjct: 155 LNSLIFLRLLQGFFSGIVWPSMHDMTAKWIPPNERSRFVSSYLGSSVGAAITYPLCASII 214

Query: 155 DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVS 208
           D  GWEA FY+T  LG+VW+V W+ +VYD+P QHPR++ +EK YI ++L  +  
Sbjct: 215 DAYGWEAVFYITSMLGLVWYVFWLFLVYDSPRQHPRITDDEKNYILKSLAESTD 268

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|157136240|ref|XP_001656790.1| sodium-dependent phosphate transporter [Aedes aegypti] gi|108881058|gb|EAT45283.1| AAEL003426-PA, partial [Aedes aegypti]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 126/177 (71%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F WD   Q LVLG+FFWLHW TQ+PGGVLAR  GTK+VFGV+N     + F +P A+Y D
Sbjct: 66  FEWDEYEQGLVLGAFFWLHWLTQVPGGVLARKYGTKMVFGVANAVGCWLCFLMPLASYLD 125

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVI 154
           Y+ +  LR +QG+I G++WP+MHH+   WIPP ERS+F+T+YLGSS GVAL +PL G +I
Sbjct: 126 YRLLIFLRALQGLICGVSWPAMHHMAGQWIPPNERSKFVTAYLGSSVGVALFFPLFGYII 185

Query: 155 DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAKK 211
               WE  F+  G  G VW+V W+  VYD+P +HPR+  +E+EYI+ +LG T  +K+
Sbjct: 186 SWTSWEYVFHFCGIFGTVWYVAWLYFVYDSPAEHPRIHPKEREYIESSLGITEKSKE 242

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094583|ref|XP_969878.1| PREDICTED: similar to Na[+]-dependent inorganic phosphate cotransporter CG10207-PA [Tribolium castaneum] gi|270016403|gb|EFA12849.1| hypothetical protein TcasGA2_TC010266 [Tribolium castaneum]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/207 (47%), Positives = 134/207 (64%), Gaps = 4/207 (1%)

Query: 5   TEGLKSPSQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLA 64
           TE  ++     I+++       QD     LF W+   Q+ +LG +FWLHW TQIPGG+L 
Sbjct: 65  TENFQNHFSKQINVTEDKFNATQD----HLFPWNEKQQSAILGGYFWLHWITQIPGGILG 120

Query: 65  RSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWI 124
              G K+VFG SN    L  F +P AAY  +  +  LR+ QG+I G AWP+MH++ A WI
Sbjct: 121 SKYGAKIVFGWSNFVSVLGCFFVPMAAYMGHHYLLALRMFQGMIAGFAWPAMHNMTARWI 180

Query: 125 PPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT 184
           PP ERS+F+T+YLGSS G AL+YP+CG +I   GWE  FYV+G  G VW++ W  +VYD+
Sbjct: 181 PPNERSKFVTAYLGSSMGAALTYPVCGFIIHRWGWEWVFYVSGVAGTVWFIAWWFLVYDS 240

Query: 185 PDQHPRVSAEEKEYIQQALGNTVSAKK 211
           P +HPR+S +EKEYI  +LG T + +K
Sbjct: 241 PAKHPRISEQEKEYILSSLGQTYTKQK 267

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

>gi|328780736|ref|XP_001121312.2| PREDICTED: vesicular glutamate transporter 2 [Apis mellifera]

 Score =  209 bits (533), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/176 (52%), Positives = 124/176 (70%), Gaps = 1/176 (0%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
           F W+ N QNL LGS+FWLHW+TQIPGG LAR  GTK+VFG+ NL   +I F +P A Y  
Sbjct: 66  FAWNENEQNLALGSYFWLHWTTQIPGGFLARHYGTKIVFGMGNLLPAIIGFIIPIATYQL 125

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVI 154
           Y  +  LRI+QG   G+ WPSMH++ A WIPP ERS+F++SYLG S G A++YPLC ++I
Sbjct: 126 Y-VLVILRILQGFFAGVVWPSMHNMTAKWIPPNERSRFVSSYLGGSVGAAITYPLCAIII 184

Query: 155 DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAK 210
             L W A F++T  +GV+W+  W    +DTP QHPR+S EEK+YI  ++ ++V  +
Sbjct: 185 KGLNWGATFHITSLIGVIWYCFWFFFAFDTPQQHPRISDEEKKYILDSIADSVDEE 240

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423826|ref|XP_003493604.1| PREDICTED: LOW QUALITY PROTEIN: vesicular glutamate transporter 2-like [Bombus impatiens]

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 91/207 (43%), Positives = 140/207 (67%), Gaps = 3/207 (1%)

Query: 5   TEGLKSPSQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLA 64
           T+   +  ++ IS +S     ++D      F W  + Q L LG+++WLHW++Q+PGG+LA
Sbjct: 63  TDDSNNTLETTISATSHS---ERDTIDDDRFAWTEHQQGLALGAYYWLHWTSQLPGGLLA 119

Query: 65  RSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWI 124
           R  GTK+V+G+ NL   ++ F +P   +    A+  LR++QG++ G+ WPSMH + A WI
Sbjct: 120 RRYGTKLVYGLGNLLTAILGFFIPFMTHHHLYALVTLRVLQGLVAGVVWPSMHDMTAKWI 179

Query: 125 PPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT 184
           P  ERS+F++SYLGSS G A++YPLC VV  T GW  AFY+T  LGV+W+  W+ +++D+
Sbjct: 180 PQNERSKFVSSYLGSSVGAAITYPLCAVVSSTFGWGTAFYITSLLGVIWYCFWLFLIHDS 239

Query: 185 PDQHPRVSAEEKEYIQQALGNTVSAKK 211
           P QHPR+S EEK+YI + LG+++  K+
Sbjct: 240 PQQHPRISDEEKKYILEHLGSSIDEKQ 266

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727684|ref|XP_003402169.1| PREDICTED: vesicular glutamate transporter 2-like [Bombus terrestris]

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 90/199 (45%), Positives = 136/199 (68%), Gaps = 3/199 (1%)

Query: 13  QSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVV 72
           ++ IS +S     +QD      F W  + Q L LG+++WLHW++Q+PGG+LAR  GTK+V
Sbjct: 71  ETTISTTSHS---EQDIIDDDRFAWTEHQQGLALGAYYWLHWASQLPGGLLARRYGTKLV 127

Query: 73  FGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQF 132
           +G+ NL   ++ F +P   ++   A+  +R +QG+  G+ WPSMH + A WIP  ERS+F
Sbjct: 128 YGLGNLLTAILGFFIPFMTHYHLYALVTIRALQGLAAGVVWPSMHDMTAKWIPQNERSKF 187

Query: 133 ITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVS 192
           ++SYLGSS G A++YPLC VV  T GW  AFY+T  LGV+W+  W+ +++D+P QHPR+S
Sbjct: 188 VSSYLGSSIGAAITYPLCAVVSSTFGWGTAFYITSLLGVIWYCFWLFLIHDSPQQHPRIS 247

Query: 193 AEEKEYIQQALGNTVSAKK 211
            EEK+YI + LG+++  K+
Sbjct: 248 DEEKKYILEHLGSSIDEKQ 266

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	211
FB|FBgn0016684	524	NaPi-T "Na[+]-dependent inorga	0.838	0.337	0.474	6.2e-46
FB|FBgn0031645	493	CG3036 [Drosophila melanogaste	0.838	0.359	0.429	2.6e-38
FB|FBgn0058263	505	MFS17 "Major Facilitator Super	0.758	0.316	0.437	3.1e-35
FB|FBgn0034490	465	CG9864 [Drosophila melanogaste	0.862	0.391	0.379	1.3e-34
FB|FBgn0030452	559	MFS10 "Major Facilitator Super	0.824	0.311	0.406	2.3e-33
ZFIN|ZDB-GENE-030616-554	584	slc17a6b "solute carrier famil	0.824	0.297	0.367	3.3e-30
UNIPROTKB|A6QLI1	582	SLC17A6 "Vesicular glutamate t	0.824	0.298	0.348	4.1e-30
UNIPROTKB|Q9P2U8	582	SLC17A6 "Vesicular glutamate t	0.824	0.298	0.348	4.1e-30
UNIPROTKB|F1SFZ2	582	SLC17A6 "Uncharacterized prote	0.824	0.298	0.348	4.1e-30
MGI|MGI:2156052	582	Slc17a6 "solute carrier family	0.824	0.298	0.348	4.1e-30

FB|FBgn0016684 NaPi-T "Na[+]-dependent inorganic phosphate cotransporter" [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 84/177 (47%), Positives = 115/177 (64%)

Query:    35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
             FHW+   Q  +LGSFFW HW+ QIPGG+LA   GTK+VFG SN       F +P  +YW 
Sbjct:    83 FHWNEKQQGALLGSFFWAHWTLQIPGGILATKYGTKLVFGWSNGIGVFCCFLIPIVSYWS 142

Query:    95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVI 154
             Y  +  LR+ QG I GLAWPSMH L A WIPP ERS+F+++YLGSS GVAL YP+ G +I
Sbjct:   143 YTGLIILRVFQGWITGLAWPSMHVLTAKWIPPNERSKFVSAYLGSSVGVALFYPIFGYII 202

Query:   155 DTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVSAKK 211
             D   WE  +Y+ G +G           +D+P +HPR++  E+++I+++LG ++   K
Sbjct:   203 DWTRWEWVYYICGIVGTLWFIAWQFLVFDSPAEHPRIADSERKFIEKSLGASIQGSK 259

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS;NAS

GO:0035435 "phosphate ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0031645 CG3036 [Drosophila melanogaster (taxid:7227)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 76/177 (42%), Positives = 112/177 (63%)

Query:    35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
             F WDS   N VLG FFW +  T++PGG LA  +G + VFG S L   L++   P AA+ +
Sbjct:    83 FPWDSYQTNFVLGCFFWGYILTELPGGRLAELIGGRRVFGHSMLWASLLTLITPLAAHIN 142

Query:    95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVI 154
             Y  +  +R+V G + G +WP++H + A WIPP ERS+F+++ + SS G A++ P+CG +I
Sbjct:   143 YVVLIVVRVVLGFMLGASWPAIHPVAAVWIPPMERSKFMSNMMASSLGAAITMPICGYLI 202

Query:   155 DTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVSAKK 211
                GW + FY+TGA+G           Y+TP  HPR+SAEE+  I++A+G T S K+
Sbjct:   203 SVAGWASVFYLTGAVGLLWSLAWFTFVYETPATHPRISAEERREIEEAIGTTTSKKR 259

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0058263 MFS17 "Major Facilitator Superfamily Transporter 17" [Drosophila melanogaster (taxid:7227)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 70/160 (43%), Positives = 101/160 (63%)

Query:    41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG 100
             V+++V+ SF+W +  +Q+ GGV     GTK VFG S LA  L SF +P+AA   Y A+  
Sbjct:    94 VKSVVISSFYWCYVLSQVVGGVATELFGTKCVFGWSQLATALCSFMMPSAAQLHYIAVIV 153

Query:   101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWE 160
             LR +QG   GL WP+M+ +V +WIP TERS+F++S+ G S G+ L+YPLCG ++   GW 
Sbjct:   154 LRSIQGFASGLTWPAMYAIVGYWIPLTERSRFMSSFQGFSIGIGLTYPLCGFILSEWGWP 213

Query:   161 AAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQ 200
               FY TG LG           ++TP +HPR++ +E  YI+
Sbjct:   214 YIFYTTGTLGLGWCILWYLLAFNTPREHPRITKDELNYIE 253

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0034490 CG9864 [Drosophila melanogaster (taxid:7227)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 69/182 (37%), Positives = 109/182 (59%)

Query:    30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA 89
             D G  ++W  + Q L+LG++F+ +  T +P G LA  LG + V G S L   +++   PA
Sbjct:    58 DYGPRYNWTQSDQALLLGAYFYGYMITSLPAGTLAEMLGARNVAGYSCLVAGILTALTPA 117

Query:    90 AAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPL 149
             AA WD  A+  +R + G + G+ +P  H LV+ W PP E+ +F+ S +G +FG  +++P+
Sbjct:   118 AAAWDKYAVFAVRFLIGFLNGVVYPCCHSLVSKWSPPDEKGKFVASLMGGTFGTVITWPI 177

Query:   150 CGVVIDTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVSA 209
              GV+I+ LGW+ AFY+ G               DTP QH  +S +E+EYI+ +LG+T+S 
Sbjct:   178 SGVIIENLGWDWAFYIVGIFVLVVVAIWFYLVADTPAQHSTISLKEREYIESSLGDTLSN 237

Query:   210 KK 211
             KK
Sbjct:   238 KK 239

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0030452 MFS10 "Major Facilitator Superfamily Transporter 10" [Drosophila melanogaster (taxid:7227)]

 Score = 366 (133.9 bits), Expect = 2.3e-33, P = 2.3e-33
 Identities = 74/182 (40%), Positives = 109/182 (59%)

Query:    26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISF 85
             Q++G+    F WD   Q LVLGSFF+ +  TQ+PGG +A   G K ++G   L   + + 
Sbjct:   130 QKEGE----FVWDEATQGLVLGSFFYGYVLTQVPGGRMAELYGGKKIYGYGVLITAVFTL 185

Query:    86 ALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITS-YLGSSFGVA 144
               P AA+WD   +  +RI++G+  G+ +P+MH ++AHWIPP ER++F    Y GS+ G  
Sbjct:   186 ITPLAAHWDLPLLVLVRILEGMGEGVTYPAMHAMLAHWIPPLERNKFAAIVYAGSNIGTV 245

Query:   145 LSYPLCGVV--IDTLG-WEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQ 201
             +S PL G +  +D LG W +AFY+ G LG           YD P  HPR+S  E+EYI++
Sbjct:   246 ISMPLAGWLCSLDFLGGWPSAFYIFGLLGILWFIAWMYLVYDKPSDHPRISESEREYIER 305

Query:   202 AL 203
             +L
Sbjct:   306 SL 307

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030616-554 slc17a6b "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6b" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 3.3e-30, P = 3.3e-30
 Identities = 65/177 (36%), Positives = 103/177 (58%)

Query:    35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
             F+WD     L+ GSFFW +  TQIPGG ++  L    VFG + L    ++  +P+AA   
Sbjct:   117 FNWDPETVGLIHGSFFWGYIVTQIPGGYISSRLAANRVFGAAILLTSTLNMFIPSAARGH 176

Query:    95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153
             Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+  T S+ GS  G  ++ PL G++
Sbjct:   177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query:   154 IDTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVSAK 210
             +   GW + FYV G  G           Y++P +HP ++AEE+ YI++++G   SAK
Sbjct:   237 VQYTGWSSVFYVYGCFGIFWYMFWILVSYESPAEHPTITAEERCYIEESIGE--SAK 291

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0007601 "visual perception" evidence=IEA;IMP

GO:0043005 "neuron projection" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|A6QLI1 SLC17A6 "Vesicular glutamate transporter 2" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 4.1e-30, P = 4.1e-30
 Identities = 61/175 (34%), Positives = 102/175 (58%)

Query:    35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
             F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct:   117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query:    95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153
             Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+  T S+ GS  G  ++ PL G++
Sbjct:   177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query:   154 IDTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVS 208
             +   GW + FYV G+ G           Y++P +HP ++ EE+ YI++++G + +
Sbjct:   237 VQYTGWSSVFYVYGSFGMIWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

GO:0043005 "neuron projection" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA

GO:0001504 "neurotransmitter uptake" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

UNIPROTKB|Q9P2U8 SLC17A6 "Vesicular glutamate transporter 2" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 4.1e-30, P = 4.1e-30
 Identities = 61/175 (34%), Positives = 102/175 (58%)

Query:    35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
             F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct:   117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query:    95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153
             Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+  T S+ GS  G  ++ PL G++
Sbjct:   177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query:   154 IDTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVS 208
             +   GW + FYV G+ G           Y++P +HP ++ EE+ YI++++G + +
Sbjct:   237 VQYTGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0001504 "neurotransmitter uptake" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0006811 "ion transport" evidence=TAS

GO:0030672 "synaptic vesicle membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1SFZ2 SLC17A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 338 (124.0 bits), Expect = 4.1e-30, P = 4.1e-30
 Identities = 61/175 (34%), Positives = 102/175 (58%)

Query:    35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
             F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct:   117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query:    95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153
             Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+  T S+ GS  G  ++ PL G++
Sbjct:   177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query:   154 IDTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVS 208
             +   GW + FYV G+ G           Y++P +HP ++ EE+ YI++++G + +
Sbjct:   237 VQYTGWSSVFYVYGSFGMIWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA

GO:0001504 "neurotransmitter uptake" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2156052 Slc17a6 "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 4.1e-30, P = 4.1e-30
 Identities = 61/175 (34%), Positives = 102/175 (58%)

Query:    35 FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
             F+WD     ++ GSFFW +  TQIPGG +A  L    VFG + L    ++  +P+AA   
Sbjct:   117 FNWDPETVGMIHGSFFWGYIITQIPGGYIASRLAANRVFGAAILLTSTLNMLIPSAARVH 176

Query:    95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153
             Y  +  +RI+QG++ G+ +P+ H + + W PP ERS+  T S+ GS  G  ++ PL G++
Sbjct:   177 YGCVIFVRILQGLVEGVTYPACHGIWSKWAPPLERSRLATTSFCGSYAGAVIAMPLAGIL 236

Query:   154 IDTLGWEAAFYVTGALGXXXXXXXXXXXYDTPDQHPRVSAEEKEYIQQALGNTVS 208
             +   GW + FYV G+ G           Y++P +HP ++ EE+ YI++++G + +
Sbjct:   237 VQYTGWSSVFYVYGSFGMVWYMFWLLVSYESPAKHPTITDEERRYIEESIGESAN 291

GO:0001504 "neurotransmitter uptake" evidence=IDA

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=ISO;IDA

GO:0005769 "early endosome" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015293 "symporter activity" evidence=IEA

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0015813 "L-glutamate transport" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	211
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	4e-35
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	6e-18
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-17
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-15
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-10
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	5e-07
COG2271	448	COG2271, UhpC, Sugar phosphate permease [Carbohydr	2e-06
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	3e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	1e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-04
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	0.003

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score =  128 bits (324), Expect = 4e-35
 Identities = 43/185 (23%), Positives = 67/185 (36%), Gaps = 6/185 (3%)

Query: 33  SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY 92
           ++ + +      + G     H+  QI   +    L  K VF  S      +S  +     
Sbjct: 65  NIKNPNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIP 124

Query: 93  WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSF-GVALSYPLCG 151
           W       L +   VI GLA  S+       I      +  +  LG S  G  L   +  
Sbjct: 125 WAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFL 184

Query: 152 VVID-----TLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNT 206
            +         GW   FYV G +G  W ++W +   D P  HP +S  EK+YI  +L   
Sbjct: 185 PISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQ 244

Query: 207 VSAKK 211
             + +
Sbjct: 245 KGSTR 249

[Transport and binding proteins, Anions]. Length = 465

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 80.8 bits (200), Expect = 6e-18
 Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 14/187 (7%)

Query: 16  ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGV 75
            +LS    + Q+D          +     V  +F W +   Q PGG L    G +    V
Sbjct: 11  ANLSFAAPMLQED------LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAV 64

Query: 76  SNLAMFLISFALPAAAYWD-YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT 134
               + +        A+   Y ++  LR++ G      +P +  +VA W P +ER+    
Sbjct: 65  ---FIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT-AV 120

Query: 135 SY--LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVS 192
           S        G  +  PL G ++    W+ AF + G LG++W V+W+  + D P Q  +  
Sbjct: 121 SIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP-QKAKWL 179

Query: 193 AEEKEYI 199
            EE++YI
Sbjct: 180 TEEEKYI 186

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 3/164 (1%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
                    L+L +F   +   Q   G L+   G + V  +  L +F +   L   A   
Sbjct: 27  LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIG-LLLFALGLLLLLFASSL 85

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVV 153
           +  +  LR++QG+ GG  +P+   L+A W PP ER + +     G   G AL   L G++
Sbjct: 86  W-LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLL 144

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKE 197
               GW AAF +   L ++  V+  +++   P +  R    E+ 
Sbjct: 145 ASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEA 188

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 72.3 bits (178), Expect = 5e-15
 Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 3/148 (2%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD 94
               ++   L++ +F   +    +  G L+   G + V  +  L   L S  L  A    
Sbjct: 29  LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SS 86

Query: 95  YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV 153
              +   R + G+ GG  +P+   L+A W PP ER + +     G   G  L   L G++
Sbjct: 87  LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146

Query: 154 IDTLGWEAAFYVTGALGVVWWVVWMIVV 181
            ++LGW   F +   LG++  ++ + ++
Sbjct: 147 AESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 13/174 (7%)

Query: 44  LVLGSFFWLHWSTQIPGGVLARSLGTKVVFGV----SNLAMFLISFALPAAAYWDYKAMA 99
           L+L SF   +  ++   G ++     +V   +      +      F+    + W    MA
Sbjct: 34  LLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---TSLW---VMA 87

Query: 100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTL- 157
            L  + G+  G+ WP     V  W   +ER  +++ +    + G  L  PL    I  L 
Sbjct: 88  ALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELY 147

Query: 158 GWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAKK 211
            W   F V G + ++  ++  +++ D+P Q   +   E+   ++  G+    ++
Sbjct: 148 SWHWVFIVPGIIAIIVSLICFLLLRDSP-QSCGLPPAEEMPNEEPDGDAEKKEE 200

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 3/116 (2%)

Query: 58  IPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH 117
              G+L    G K V  V      L       A   +   +   R +QG     A  +  
Sbjct: 16  PLSGLLTDRFGRKPVLLVGLFIFVL--STAMFALSSNITVLIIARFLQGFGAAFALVAGA 73

Query: 118 HLVAHWIPPTERSQ-FITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV 172
            L+A   PP ER         G + G  L  PL GV+   LGW A F     L + 
Sbjct: 74  ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129

Length = 141

>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 30/133 (22%), Positives = 50/133 (37%), Gaps = 15/133 (11%)

Query: 61  GVLARSLGTKVVFG----VSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM 116
           GVL+     +        +S +   L  F+            A L ++ G   G+ WP  
Sbjct: 85  GVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFL------FAVLWVLNGWFQGMGWPPC 138

Query: 117 HHLVAHWIPPTERSQFITSYLGSS--FGVALSYPLC--GVVIDTLGWEAAFYVTGALGVV 172
              + HW    ER     S   +S   G AL+  +          GW AAFY  G + ++
Sbjct: 139 ARTITHWFSRKERG-TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAII 197

Query: 173 WWVVWMIVVYDTP 185
             ++ + ++ D P
Sbjct: 198 VALILLFLLRDRP 210

Length = 448

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 56  TQIP-GGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWP 114
             IP  G LA+  GT+ +F +S  A  L S     A   + + M   R++QG  GG   P
Sbjct: 52  ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--NLELMIIFRVIQGFGGGPLIP 109

Query: 115 SMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGV-V 172
                + +  PP +R + +  + L      AL   L G +I+   W   F +   +G+ V
Sbjct: 110 LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIV 169

Query: 173 WWVVWMIVVYDTPDQH 188
             V + I+  D P   
Sbjct: 170 VVVAFFILPRDKPAAS 185

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 67  LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP 126
           LG   +F VSNL          +A    +  +   R + G+  G+ W     L A  +PP
Sbjct: 82  LGLLALFIVSNLL---------SALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP 132

Query: 127 TERSQFITS-YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181
            +R + +   + G +    L  PL   +    GW A F     L ++  ++   ++
Sbjct: 133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLL 188

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 2/151 (1%)

Query: 32  GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA 91
             +    +    L+L  F        + GG+L+  LG + +  +  L +  +   L A A
Sbjct: 203 QEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262

Query: 92  YWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFI-TSYLGSSFGVALSYPLC 150
                 +  L ++ G   G A+P++  L +   PP  R           S G AL   L 
Sbjct: 263 PSLALLLVAL-LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLA 321

Query: 151 GVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181
           G+++DT G+   F +  AL ++  ++ +++ 
Sbjct: 322 GLLLDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 60  GGVLARSLGTKVVFGVSNLAMFLIS-FALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH 118
            G LA  +G + V   S   + L S F L  A   +   +  LR + G+  G   P+++ 
Sbjct: 72  FGPLADRIGRRRVLLWS---ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNA 128

Query: 119 LVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW 177
           LV+ + P   R   +     G   G A+   L G +I   GW + FYV G   ++  ++ 
Sbjct: 129 LVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188

Query: 178 MIVV 181
           M  +
Sbjct: 189 MRFL 192

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	211
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.92
TIGR00893	399	2A0114 d-galactonate transporter.	99.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
KOG2532|consensus	466		99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
KOG1330|consensus	493		99.91
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.91
PRK03545	390	putative arabinose transporter; Provisional	99.9
PRK11663	434	regulatory protein UhpC; Provisional	99.9
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.89
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.89
PRK10091	382	MFS transport protein AraJ; Provisional	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.88
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.88
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.88
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.88
PRK09705	393	cynX putative cyanate transporter; Provisional	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.87
TIGR00891	405	2A0112 putative sialic acid transporter.	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.87
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.87
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.87
TIGR00900	365	2A0121 H+ Antiporter protein.	99.86
TIGR00895	398	2A0115 benzoate transport.	99.86
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.86
PRK12307	426	putative sialic acid transporter; Provisional	99.85
TIGR00898	505	2A0119 cation transport protein.	99.85
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.85
PRK11043	401	putative transporter; Provisional	99.85
KOG2533|consensus	495		99.85
PRK10642	490	proline/glycine betaine transporter; Provisional	99.84
PRK10504	471	putative transporter; Provisional	99.84
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.84
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.84
PRK03893	496	putative sialic acid transporter; Provisional	99.83
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.83
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.83
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.83
PRK10054	395	putative transporter; Provisional	99.83
PRK03699	394	putative transporter; Provisional	99.83
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.83
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.83
PRK12382	392	putative transporter; Provisional	99.82
KOG3764|consensus	464		99.82
PRK05122	399	major facilitator superfamily transporter; Provisi	99.82
PRK09874	408	drug efflux system protein MdtG; Provisional	99.82
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.82
PLN00028	476	nitrate transmembrane transporter; Provisional	99.81
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.81
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.81
PRK09952	438	shikimate transporter; Provisional	99.81
PRK15075	434	citrate-proton symporter; Provisional	99.81
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.8
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.8
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.8
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.8
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.79
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.79
KOG0255|consensus	521		99.79
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.78
TIGR00805	633	oat sodium-independent organic anion transporter.	99.78
PRK10133	438	L-fucose transporter; Provisional	99.78
PRK03633	381	putative MFS family transporter protein; Provision	99.78
PRK10489	417	enterobactin exporter EntS; Provisional	99.76
PTZ00207	591	hypothetical protein; Provisional	99.76
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.74
KOG0254|consensus	513		99.74
TIGR00901	356	2A0125 AmpG-related permease.	99.74
PRK15011	393	sugar efflux transporter B; Provisional	99.74
KOG2615|consensus	451		99.74
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.72
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.71
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.71
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.69
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.68
KOG0569|consensus	485		99.68
PRK10642	490	proline/glycine betaine transporter; Provisional	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.67
PRK11902	402	ampG muropeptide transporter; Reviewed	99.67
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.66
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.66
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.65
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.65
PRK05122	399	major facilitator superfamily transporter; Provisi	99.64
PRK09528	420	lacY galactoside permease; Reviewed	99.63
PRK11010	491	ampG muropeptide transporter; Validated	99.63
PRK10489	417	enterobactin exporter EntS; Provisional	99.62
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.62
KOG2504|consensus	509		99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.61
PRK09528	420	lacY galactoside permease; Reviewed	99.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.61
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.6
PRK15011	393	sugar efflux transporter B; Provisional	99.6
PRK03893	496	putative sialic acid transporter; Provisional	99.59
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.59
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.58
PRK09874	408	drug efflux system protein MdtG; Provisional	99.58
PRK12382	392	putative transporter; Provisional	99.57
KOG0253|consensus	528		99.57
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.56
KOG0252|consensus	538		99.56
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.55
PRK03545	390	putative arabinose transporter; Provisional	99.55
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.54
PRK03699	394	putative transporter; Provisional	99.53
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.52
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.51
PRK03633	381	putative MFS family transporter protein; Provision	99.51
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.5
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.49
PRK11663	434	regulatory protein UhpC; Provisional	99.48
TIGR00891	405	2A0112 putative sialic acid transporter.	99.48
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.47
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.47
PRK09705	393	cynX putative cyanate transporter; Provisional	99.47
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.47
PRK09952	438	shikimate transporter; Provisional	99.47
TIGR00893	399	2A0114 d-galactonate transporter.	99.45
PRK15075	434	citrate-proton symporter; Provisional	99.45
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.44
PRK12307	426	putative sialic acid transporter; Provisional	99.43
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.43
PRK11010	491	ampG muropeptide transporter; Validated	99.43
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.42
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.42
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.4
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.39
PRK09669	444	putative symporter YagG; Provisional	99.37
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.37
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.36
PRK10054	395	putative transporter; Provisional	99.35
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.35
TIGR00900	365	2A0121 H+ Antiporter protein.	99.35
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.35
PRK10504	471	putative transporter; Provisional	99.35
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.34
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.34
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.33
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.33
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.33
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.31
TIGR00898	505	2A0119 cation transport protein.	99.3
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.3
PRK10091	382	MFS transport protein AraJ; Provisional	99.29
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.29
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.28
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.28
PRK11902	402	ampG muropeptide transporter; Reviewed	99.27
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.27
KOG2325|consensus	488		99.26
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.26
KOG2504|consensus	509		99.25
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.24
TIGR00895	398	2A0115 benzoate transport.	99.24
PRK09848	448	glucuronide transporter; Provisional	99.23
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.23
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.23
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.21
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.2
PRK10429	473	melibiose:sodium symporter; Provisional	99.19
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.19
PRK10133	438	L-fucose transporter; Provisional	99.19
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.18
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.17
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.15
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.14
KOG0569|consensus	485		99.14
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.14
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.13
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.13
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.12
PF13347	428	MFS_2: MFS/sugar transport protein	99.11
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.08
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.08
KOG3762|consensus	618		99.08
KOG4686|consensus	459		99.05
PRK11043	401	putative transporter; Provisional	99.05
PRK09669	444	putative symporter YagG; Provisional	99.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.04
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.02
PRK10429	473	melibiose:sodium symporter; Provisional	99.02
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.99
TIGR00901	356	2A0125 AmpG-related permease.	98.99
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.98
KOG0253|consensus	528		98.97
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.96
COG0477	338	ProP Permeases of the major facilitator superfamil	98.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.9
PRK11462	460	putative transporter; Provisional	98.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.84
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.84
PF13347	428	MFS_2: MFS/sugar transport protein	98.82
PRK11462	460	putative transporter; Provisional	98.81
COG2211	467	MelB Na+/melibiose symporter and related transport	98.81
KOG2816|consensus	463		98.8
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.8
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.79
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.78
KOG2563|consensus	480		98.78
PRK09848	448	glucuronide transporter; Provisional	98.77
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.74
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.7
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.69
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.67
KOG3764|consensus	464		98.67
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.64
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.64
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.63
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.63
KOG2532|consensus	466		98.62
COG2211	467	MelB Na+/melibiose symporter and related transport	98.62
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.57
KOG4686|consensus	459		98.52
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.51
KOG0254|consensus	513		98.5
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.5
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.49
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.44
KOG3626|consensus	735		98.42
KOG0255|consensus	521		98.34
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.32
KOG0252|consensus	538		98.3
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.24
PF12832	77	MFS_1_like: MFS_1 like family	98.17
KOG2533|consensus	495		98.15
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.1
KOG2816|consensus	463		97.95
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.92
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.86
KOG2615|consensus	451		97.81
PTZ00207	591	hypothetical protein; Provisional	97.7
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.66
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.6
KOG4332|consensus	454		97.52
KOG3098|consensus	461		97.39
PRK03612	521	spermidine synthase; Provisional	97.35
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.31
KOG1237|consensus	571		97.26
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.14
KOG0637|consensus	498		97.04
KOG3762|consensus	618		96.92
KOG2563|consensus	480		96.8
KOG1330|consensus	493		96.43
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.35
KOG3098|consensus	461		95.95
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.63
KOG3574|consensus	510		95.41
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.73
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.22
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.82
KOG4332|consensus	454		93.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	93.09
TIGR00805	633	oat sodium-independent organic anion transporter.	92.98
KOG0637|consensus	498		92.58
KOG2325|consensus	488		92.09
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.53
KOG3810|consensus	433		91.45
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.9
KOG3626|consensus	735		90.7
COG3202	509	ATP/ADP translocase [Energy production and convers	89.79
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	88.99
KOG3880|consensus	409		88.43
KOG1479|consensus	406		87.4
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	86.75
KOG3880|consensus	409		86.55
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	86.32
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	86.23
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	85.27
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	84.86
KOG3097|consensus	390		82.99

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.94  E-value=1.1e-25  Score=183.05  Aligned_cols=171  Identities=19%  Similarity=0.206  Sum_probs=155.3

Q ss_pred             cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY   95 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~   95 (211)
                      +++.|+..+.+..|.+++++|++..+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++..++  +++
T Consensus        19 ~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~~~   96 (412)
T TIGR02332        19 FSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFA--TGP   96 (412)
T ss_pred             HHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh--cCH
Confidence            467888889899999999999999999999999999999999999999999999999999999999999999887  889


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc------ccCchHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID------TLGWEAAFYVTGA  168 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~------~~gw~~~~~~~~~  168 (211)
                      +.+++.|++.|++.+...+....++.|++|+++|+++++ ......+|..+++.+++++.+      ..|||+.|++.++
T Consensus        97 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~  176 (412)
T TIGR02332        97 ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGF  176 (412)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHH
Confidence            999999999999999999999999999999999999999 778999999999999998864      3699999999888


Q ss_pred             HHHHHHHHHHhhhcCCCCCC
Q psy3615         169 LGVVWWVVWMIVVYDTPDQH  188 (211)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~  188 (211)
                      ..++..++.+++.||+|++.
T Consensus       177 ~~l~~~~~~~~~~~~~p~~~  196 (412)
T TIGR02332       177 PSVILGVMTWFWLDDSPDKA  196 (412)
T ss_pred             HHHHHHHHHhhccCCCcccC
Confidence            88777666666678877553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=9.9e-25  Score=172.46  Aligned_cols=161  Identities=14%  Similarity=0.174  Sum_probs=153.4

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      .+.+...+.|++.+|+|+|..+.|+..+.|.++..++.++...+.||+.||++++....++.++.+++.++  +|++.++
T Consensus        28 tEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alA--p~f~~Ll  105 (394)
T COG2814          28 TEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALA--PSFAVLL  105 (394)
T ss_pred             HHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence            34445567788999999999999999999999999999999999999999999999999999999999999  9999999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.|++.|++.|.+++....+..+..|+++|+++++ ...+..++..+|.+++.++.+.+|||.+|+..+.++++..+..+
T Consensus       106 ~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~  185 (394)
T COG2814         106 LARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW  185 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 99999999999999999999999999999999999999988888


Q ss_pred             hhhc
Q psy3615         179 IVVY  182 (211)
Q Consensus       179 ~~~~  182 (211)
                      ..+|
T Consensus       186 ~~lP  189 (394)
T COG2814         186 KLLP  189 (394)
T ss_pred             HhCC
Confidence            8888

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.92  E-value=3.1e-24  Score=172.17  Aligned_cols=170  Identities=24%  Similarity=0.411  Sum_probs=154.4

Q ss_pred             cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY   95 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~   95 (211)
                      +++.++..++...|.+.+++|++..+.+++.+.+.++..++.++.|++.||+|||+++..+.++.+++..++.+.  +++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~   82 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA--GAY   82 (399)
T ss_pred             HHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH--cCH
Confidence            467777888888888999999999999999999999999999999999999999999999999999999888887  789


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      +.+++.|++.|++.+...+....++.|++|+++|+++++ ......+|..+++.+.+.+.+..+||+.|++.+.+.++..
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 8899999999999999999999999999999888877766


Q ss_pred             HHHHhhhcCCCCC
Q psy3615         175 VVWMIVVYDTPDQ  187 (211)
Q Consensus       175 ~~~~~~~~~~~~~  187 (211)
                      ++..+..+|++++
T Consensus       163 ~~~~~~~~~~~~~  175 (399)
T TIGR00893       163 VLWLKFIPDPPQK  175 (399)
T ss_pred             HHhhheecCCCCc
Confidence            6666556665543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=5.9e-24  Score=175.37  Aligned_cols=163  Identities=33%  Similarity=0.590  Sum_probs=142.0

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW  113 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  113 (211)
                      +++++..+.|++.+.+.+++.+++++.|++.||+|+|+++..+.++.+++.+++.+....+++.+++.|+++|++.+...
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~  149 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS  149 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence            78999999999999999999999999999999999999999999999888877655433557889999999999999999


Q ss_pred             HHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q psy3615         114 PSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRV  191 (211)
Q Consensus       114 ~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (211)
                      +....++.|++|+++|+++++ ...+..+|..+++++.+.+.+. .+||+.|++.+++.++..++.+...+|+|+++++.
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~  229 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCI  229 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCC
Confidence            999999999999999999999 7799999999999999999988 49999999998888777776666666766554444


Q ss_pred             ChHHH
Q psy3615         192 SAEEK  196 (211)
Q Consensus       192 ~~~~~  196 (211)
                      +++|+
T Consensus       230 ~~~~~  234 (465)
T TIGR00894       230 SKFEK  234 (465)
T ss_pred             CHHHH
Confidence            44333

>KOG2532|consensus

Probab=99.91  E-value=9.3e-24  Score=172.53  Aligned_cols=175  Identities=35%  Similarity=0.771  Sum_probs=162.3

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      ..++++|+.+.+++.+.++.|+.+++++.|++.||+|.|+++.++.++.++..++.+++...+++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            56899999999999999999999999999999999999999999999999999999998766777889999999999999


Q ss_pred             chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3615         112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHP  189 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (211)
                      .+|+...+.++|.|++||++..+ .+.+..+|.+++.+++|++.+. .||+..|++.+.++++..++++++..|+|.+++
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~  224 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHP  224 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence            99999999999999999999999 8899999999999999999999 999999999999999999988888889998888


Q ss_pred             CCChHHHHHHHHhhhcc
Q psy3615         190 RVSAEEKEYIQQALGNT  206 (211)
Q Consensus       190 ~~~~~~~~~~~~~~~~~  206 (211)
                      ...++|++..++...++
T Consensus       225 ~is~~El~~I~~~k~~~  241 (466)
T KOG2532|consen  225 NISEKELKYIEKGKSEA  241 (466)
T ss_pred             CCCHHHHHHHHhccccc
Confidence            88888887766654443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=5.1e-24  Score=170.73  Aligned_cols=167  Identities=10%  Similarity=0.014  Sum_probs=139.7

Q ss_pred             ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615          19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM   98 (211)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~   98 (211)
                      .....+.+..|.+++|+|+|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+......+.......  ++++.+
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l   82 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP--FNYEWL   82 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence            344556777888999999999999999999999999999999999999999987765554444443322222  579999


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      ++.|++.|++.+. .......++|++|+++|+++++ ...+..+|..++++++.++.++.|||+.|++.+++.++..++.
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~  161 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV  161 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            9999999999986 4566666799999999999999 8899999999999999999999999999999888888877777


Q ss_pred             HhhhcCCCCCC
Q psy3615         178 MIVVYDTPDQH  188 (211)
Q Consensus       178 ~~~~~~~~~~~  188 (211)
                      ++..||+|+.+
T Consensus       162 ~~~lp~~p~~~  172 (368)
T TIGR00903       162 LAALPALPFQA  172 (368)
T ss_pred             HHHcCCCCCCC
Confidence            77788876543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG1330|consensus

Probab=99.91  E-value=2.4e-25  Score=176.23  Aligned_cols=171  Identities=20%  Similarity=0.201  Sum_probs=162.0

Q ss_pred             CccccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc
Q psy3615          14 SPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW   93 (211)
Q Consensus        14 ~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~   93 (211)
                      +-+|+.|+..+.-..+.+++.+|++++..|++.+.+.+.+.+++++.|+++||++||+++.+|..++.++.++.++.  +
T Consensus        42 nlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~  119 (493)
T KOG1330|consen   42 NLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--N  119 (493)
T ss_pred             HHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--H
Confidence            45688899999999999999999999999999999999999999999999999999999999999999999999988  8


Q ss_pred             cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHH
Q psy3615          94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGV  171 (211)
Q Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~  171 (211)
                      .+|++.++|.+.|+|.+...+..+++++|.+|.++|++.++ +|....+|..+|.+++..+.+..+ |||.|+..+++++
T Consensus       120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~v  199 (493)
T KOG1330|consen  120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGV  199 (493)
T ss_pred             HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHH
Confidence            89999999999999999999999999999999999999999 999999999999999999988876 9999999999999


Q ss_pred             HHHHHHHhhhcCCCC
Q psy3615         172 VWWVVWMIVVYDTPD  186 (211)
Q Consensus       172 ~~~~~~~~~~~~~~~  186 (211)
                      ++.++.+++.+|+++
T Consensus       200 i~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  200 IVGLLVFLFVREPER  214 (493)
T ss_pred             HHHHHHHhhccCccc
Confidence            999888888877665

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=7e-24  Score=166.49  Aligned_cols=169  Identities=16%  Similarity=0.246  Sum_probs=159.7

Q ss_pred             cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      |..|..+....|.+.++.++|.+|.|.+.+.+.+.+.++..+.|.++||.++|+.+..++++.++..+++++.  ++.+.
T Consensus        42 Yl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs--~s~~~  119 (448)
T COG2271          42 YLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS--PSLFL  119 (448)
T ss_pred             HHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh--hHHHH
Confidence            4566778888999999999999999999999999999999999999999999999999999999999999998  88999


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh--hhhhcccCchHHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC--GVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~--~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      +.+..+++|..+|..+|+....+..|+++++||+..+ +++..++|+.+.|++.  +++..+.+||..|++.++++++..
T Consensus       120 ~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiiva  199 (448)
T COG2271         120 FAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVA  199 (448)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 9999999999999999  899888899999999999999999


Q ss_pred             HHHHhhhcCCCCCC
Q psy3615         175 VVWMIVVYDTPDQH  188 (211)
Q Consensus       175 ~~~~~~~~~~~~~~  188 (211)
                      ++.++..+|+|+..
T Consensus       200 l~~~~~~rd~Pqs~  213 (448)
T COG2271         200 LILLFLLRDRPQSE  213 (448)
T ss_pred             HHHHHHhCCCcccc
Confidence            98888888888753

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.91  E-value=8.9e-24  Score=175.61  Aligned_cols=169  Identities=13%  Similarity=0.079  Sum_probs=152.4

Q ss_pred             cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY   95 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~   95 (211)
                      ....|.+++....|.+.+++|.+.++.+|+.+.+.++..++.++.|+++||+|||+++.++..+++++.++++++  +|+
T Consensus        17 ~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a--~~~   94 (495)
T PRK14995         17 PVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFS--PTA   94 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHc--CCH
Confidence            345678888888999999999999999999999999999999999999999999999999999999999999888  899


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~  173 (211)
                      +.+++.|+++|++.+...+.....+.+.+ |+++|+++++ ......+|..+||.+++++.++.+||+.|++...+.++.
T Consensus        95 ~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~  174 (495)
T PRK14995         95 SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVV  174 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHH
Confidence            99999999999999998888888887776 6789999999 789999999999999999999999999999988887777


Q ss_pred             HHHHHhhhcCCCC
Q psy3615         174 WVVWMIVVYDTPD  186 (211)
Q Consensus       174 ~~~~~~~~~~~~~  186 (211)
                      .++..+..|++++
T Consensus       175 ~~l~~~~l~~~~~  187 (495)
T PRK14995        175 MGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHhCCCCCC
Confidence            6666666776543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.90  E-value=2.9e-23  Score=167.68  Aligned_cols=159  Identities=17%  Similarity=0.289  Sum_probs=144.1

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (211)
                      .+..|.+.+++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.+.+.+.  ++++.+++.|++
T Consensus        29 ~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~~  106 (390)
T PRK03545         29 VGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA--WNFTVLLISRIG  106 (390)
T ss_pred             HcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHH
Confidence            344577899999999999999999999999999999999999999999999999999999998888  899999999999


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      .|++.+..++...+++.|++|+++|+++++ .....++|..++|++++.+.++.|||+.|++.+++.++..++.+...||
T Consensus       107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~  186 (390)
T PRK03545        107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999888999999999999999999999 7799999999999999999998999999999988877766655555565


Q ss_pred             CC
Q psy3615         184 TP  185 (211)
Q Consensus       184 ~~  185 (211)
                      ++
T Consensus       187 ~~  188 (390)
T PRK03545        187 LP  188 (390)
T ss_pred             CC
Confidence            43

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.90  E-value=4.1e-23  Score=169.06  Aligned_cols=167  Identities=17%  Similarity=0.258  Sum_probs=148.0

Q ss_pred             cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      +.++..+....|.+.+++|+|+.+.+++.+.+.+++.+++++.|++.||+|||+++.++.++.+++.+++.+.  ++++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~  113 (434)
T PRK11663         36 YFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS--SSLWA  113 (434)
T ss_pred             HHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH--hHHHH
Confidence            3445556677788899999999999999999999999999999999999999999999999999999988877  88999


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      +++.|++.|++.|..++....++.+++|+++|+++++ .+....+|..+++.+.+++.+..|||+.|++.+++.++..++
T Consensus       114 l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~  193 (434)
T PRK11663        114 FALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLF  193 (434)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999989999999999999999999999 779999999999999999999999999999988877665555


Q ss_pred             HHhhhcCCCC
Q psy3615         177 WMIVVYDTPD  186 (211)
Q Consensus       177 ~~~~~~~~~~  186 (211)
                      ..+..+|+|+
T Consensus       194 ~~~~~~~~p~  203 (434)
T PRK11663        194 LCWRLRDKPQ  203 (434)
T ss_pred             HHHHcCCCHh
Confidence            5555566543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.89  E-value=5.5e-23  Score=167.28  Aligned_cols=165  Identities=12%  Similarity=0.060  Sum_probs=145.7

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      +.....+..|.+.+++|.+..+.++..+++.+++.+++++.|+++||+|||++++.+.++++++.+++.++  ++++.++
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a--~~~~~l~  108 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFT--TSMTQFL  108 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHc--CCHHHHH
Confidence            44555666677889999999999999999999999999999999999999999999999999999988887  8899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.|+++|++.+...+....++.|++|+++|++.++ ......+|..++|.+++.+.++.|||+.|++.+++.++..+..+
T Consensus       109 ~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~  188 (413)
T PRK15403        109 IARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLL  188 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988767777888999999999999999 88889999999999999999888999999999888777666555


Q ss_pred             hhhcCCCC
Q psy3615         179 IVVYDTPD  186 (211)
Q Consensus       179 ~~~~~~~~  186 (211)
                      +..||+++
T Consensus       189 ~~lp~~~~  196 (413)
T PRK15403        189 LAMPETVK  196 (413)
T ss_pred             HhCCCCcc
Confidence            55676543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.89  E-value=1.4e-22  Score=163.93  Aligned_cols=157  Identities=13%  Similarity=0.157  Sum_probs=140.9

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      ..|.+.+++|+++++.++..+.+.++..+++++.|++.||+|||+++..+.++.+++.+++.+.  ++++.+++.|++.|
T Consensus        42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G  119 (394)
T PRK10213         42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLG  119 (394)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHH
Confidence            4456789999999999999999999999999999999999999999999999999998888777  88999999999999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      ++.+...+...+++.|++|+++|+++++ .....++|..++|++++.+.+..|||+.|++.+.+.++..+......||.+
T Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        120 LALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            9999999999999999999999999999 889999999999999999999999999999988776655444444455543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.89  E-value=1.2e-22  Score=163.66  Aligned_cols=162  Identities=10%  Similarity=0.046  Sum_probs=145.4

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL  101 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (211)
                      ....+..|.+++++|++..+.+++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+++.++  ++++.+++.
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~--~~~~~l~~~   97 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLS--SSYLMLAIG   97 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHH
Confidence            345556677899999999999999999999999999999999999999999999999999999998888  899999999


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      |++.|++.+...+....++.|++|+++|+++++ ...+..+|..++|++++++.+..+||+.|++.+.+.++..+..++.
T Consensus        98 r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  177 (382)
T PRK10091         98 RLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFW  177 (382)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999888888899999999999999999 7788999999999999999998999999999988877766655555


Q ss_pred             hcCCC
Q psy3615         181 VYDTP  185 (211)
Q Consensus       181 ~~~~~  185 (211)
                      .||.+
T Consensus       178 lp~~~  182 (382)
T PRK10091        178 VPDIR  182 (382)
T ss_pred             CCCCC
Confidence            66654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.89  E-value=6.8e-23  Score=169.24  Aligned_cols=171  Identities=13%  Similarity=0.088  Sum_probs=146.7

Q ss_pred             cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh---hc
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA---AY   92 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~---~~   92 (211)
                      .++.++..++...|.+.+++|++..+.|++.+.+.+++.+++++.|+++||+|+|+++..+.++.++..+..++.   ..
T Consensus        40 ~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~  119 (467)
T PRK09556         40 TMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGS  119 (467)
T ss_pred             HHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhccc
Confidence            356788888888999999999999999999999999999999999999999999999998888887776665542   12


Q ss_pred             ccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---CchHHHHHHHH
Q psy3615          93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---GWEAAFYVTGA  168 (211)
Q Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~~~~~  168 (211)
                      ++++.+++.|++.|++.+...+...+++++++|+++|+++++ .....++|.++++.+..++.+..   +|+..|.+.++
T Consensus       120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~  199 (467)
T PRK09556        120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSI  199 (467)
T ss_pred             chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence            689999999999999999999999999999999999999999 77999999999999887776643   59998888888


Q ss_pred             HHHHHHHHHHhhhcCCCC
Q psy3615         169 LGVVWWVVWMIVVYDTPD  186 (211)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~  186 (211)
                      +.++..++.+++.+++|+
T Consensus       200 ~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        200 IALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             HHHHHHHHHHHhCCCChh
Confidence            877766666665565543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.89  E-value=3.6e-23  Score=165.44  Aligned_cols=168  Identities=15%  Similarity=0.245  Sum_probs=150.1

Q ss_pred             cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY   95 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~   95 (211)
                      .++.++..+....|.+.+++|+|..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..+.  +++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~   83 (379)
T TIGR00881         6 AYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--TSL   83 (379)
T ss_pred             HHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh--hhH
Confidence            456677888888889999999999999999999999999999999999999999999999999999999988888  789


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhh-hhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSY-PLCGVVIDTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~-~~~~~l~~~~gw~~~~~~~~~~~~~~  173 (211)
                      +.+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..+++ .+...+.+..+||+.|++.+.+.++.
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIV  163 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 8899999999999 46677777789999999888877776


Q ss_pred             HHHHHhhhcCCC
Q psy3615         174 WVVWMIVVYDTP  185 (211)
Q Consensus       174 ~~~~~~~~~~~~  185 (211)
                      .++.++..+|++
T Consensus       164 ~~~~~~~~~~~~  175 (379)
T TIGR00881       164 SLICFLLLRDSP  175 (379)
T ss_pred             HHHHheeeCCCc
Confidence            666665566544

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.89  E-value=3.7e-22  Score=160.38  Aligned_cols=164  Identities=16%  Similarity=0.164  Sum_probs=146.2

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG  100 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (211)
                      .....+..|.+.+++|.|+.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++.+.+...  ++++.+++
T Consensus        21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   98 (385)
T TIGR00710        21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS--NNIETLLV   98 (385)
T ss_pred             HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHH
Confidence            3444556677889999999999999999999999999999999999999999999999999998888777  88999999


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .|++.|++.+...+...+++.|++|+++|+++++ .+....+|..+++.+++.+.+..+||+.+++.+...++..++.++
T Consensus        99 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710        99 LRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 889999999999999999999899999999988877776666555


Q ss_pred             hhcCCCC
Q psy3615         180 VVYDTPD  186 (211)
Q Consensus       180 ~~~~~~~  186 (211)
                      ..||+++
T Consensus       179 ~~~~~~~  185 (385)
T TIGR00710       179 ILPETLP  185 (385)
T ss_pred             hCCCCCC
Confidence            5666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.88  E-value=7.8e-23  Score=162.15  Aligned_cols=162  Identities=22%  Similarity=0.322  Sum_probs=140.3

Q ss_pred             ccccccccC-CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          21 RGVLFQQDG-DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        21 ~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      .....+..+ .+.+++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..++  ++.+.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~~~   89 (352)
T PF07690_consen   12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--SNFWLLL   89 (352)
T ss_dssp             HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--CCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--hhHHHHh
Confidence            334444555 6789999999999999999999999999999999999999999999999999996666555  6777999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.|++.|++.+...+....++.|++|+++|+++++ ......+|..++|.+++.+.+..+||+.|++.+.+.++..++..
T Consensus        90 ~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~  169 (352)
T PF07690_consen   90 IARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFI  169 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHh
Confidence            99999999999999999999999999999999999 88999999999999999999889999999999999888776543


Q ss_pred             hhhcCC
Q psy3615         179 IVVYDT  184 (211)
Q Consensus       179 ~~~~~~  184 (211)
                      .+.+++
T Consensus       170 ~~~~~~  175 (352)
T PF07690_consen  170 LFLPEP  175 (352)
T ss_dssp             CCC---
T ss_pred             hhhhhc
Confidence            444433

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.88  E-value=3.6e-22  Score=159.50  Aligned_cols=163  Identities=18%  Similarity=0.104  Sum_probs=142.6

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      .+...++..|.+.+++|+|..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.+.  ++++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~   95 (377)
T TIGR00890        18 YVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA--DSLAALY   95 (377)
T ss_pred             HHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH--HHHHHHH
Confidence            34455677888999999999999999999999999999999999999999999999999999999988888  8899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.|++.|++.+..++.....+.+++| ++|+++.+ ......+|..+++++.+.+.+..+||+.|++.+++.++..+..+
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  174 (377)
T TIGR00890        96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGA  174 (377)
T ss_pred             HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888999997 57999999 77888999888777777777888999999999888877766665


Q ss_pred             hhhcCCC
Q psy3615         179 IVVYDTP  185 (211)
Q Consensus       179 ~~~~~~~  185 (211)
                      +..++++
T Consensus       175 ~~~~~~~  181 (377)
T TIGR00890       175 FLIGYPP  181 (377)
T ss_pred             HheecCc
Confidence            5555443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.88  E-value=2.1e-22  Score=163.30  Aligned_cols=167  Identities=22%  Similarity=0.251  Sum_probs=147.1

Q ss_pred             cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      ..+........|.+.+++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+++.+.  ++++.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~  105 (406)
T PRK11551         28 GLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA--WDFPS  105 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHH
Confidence            3445556667778899999999999999999999999999999999999999999999999998888888777  88999


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      +++.|++.|++.+...+...+++.|++|+++|+++++ .+....+|..+++.+++.+.+..+|++.|++.+++.++..++
T Consensus       106 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        106 LLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 889999999999999988888889999999887776666555


Q ss_pred             HHhhhcCCCC
Q psy3615         177 WMIVVYDTPD  186 (211)
Q Consensus       177 ~~~~~~~~~~  186 (211)
                      .....||+++
T Consensus       186 ~~~~l~~~~~  195 (406)
T PRK11551        186 LMRWLPESRA  195 (406)
T ss_pred             HHHhCCCChh
Confidence            5555677654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.88  E-value=2.1e-22  Score=166.70  Aligned_cols=166  Identities=20%  Similarity=0.239  Sum_probs=150.4

Q ss_pred             ccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHH
Q psy3615          17 SLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYK   96 (211)
Q Consensus        17 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~   96 (211)
                      ...+..+..+..|.+.+++|.+..+.+++.+.+.++..++.++.|++.||+|||+++.++.++.+++.+++...  ++++
T Consensus        14 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~   91 (485)
T TIGR00711        14 AVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVA--PNLE   91 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCc--CCHH
Confidence            34566667777888999999999999999999999999999999999999999999999999999999998877  8899


Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615          97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus        97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  175 (211)
                      .+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++++.++.+||+.|++.+.+.++..+
T Consensus        92 ~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~  171 (485)
T TIGR00711        92 LMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVV  171 (485)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999 77999999999999999999999999999998888777666


Q ss_pred             HHHhhhcCC
Q psy3615         176 VWMIVVYDT  184 (211)
Q Consensus       176 ~~~~~~~~~  184 (211)
                      +..+..|++
T Consensus       172 ~~~~~~~~~  180 (485)
T TIGR00711       172 VAFFILPRD  180 (485)
T ss_pred             HHHHHcCCc
Confidence            655556554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.87  E-value=6.4e-22  Score=160.09  Aligned_cols=150  Identities=10%  Similarity=-0.021  Sum_probs=134.8

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL  101 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (211)
                      ..+.+..|.+++++|+|.++.+++.+.+.+++.+++++.|++.||+|||+++..+..+++++.+.++++  ++++.+++.
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a--~~~~~ll~~  103 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY--PQSALLLSS  103 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC--cchHHHHHH
Confidence            445677788999999999999999999999999999999999999999999999999999999999888  899999999


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc-CchHHHHHHHHHHHHHH
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL-GWEAAFYVTGALGVVWW  174 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~~~~~~~~~~~  174 (211)
                      |++.|++.+...+....++.+++| ++|+++++ ...+..+|..+++.+++++.++. +||+.+...+...++..
T Consensus       104 r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~  177 (393)
T PRK09705        104 ALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL  177 (393)
T ss_pred             HHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999997 78999999 77888899999999999888875 89998877665544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.87  E-value=1.1e-21  Score=157.43  Aligned_cols=162  Identities=17%  Similarity=0.188  Sum_probs=145.1

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL  101 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (211)
                      ....+..|.+.+++|+|+.+.+++.+.+.++..+++++.|++.||+|||+++..+.++.+++...+.+.  ++++.+++.
T Consensus         8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~   85 (377)
T PRK11102          8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA--QTIDQLIYM   85 (377)
T ss_pred             HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHHH
Confidence            344566677788999999999999999999999999999999999999999999999999999888777  889999999


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      |++.|++.+...+...+++.|++|+++|+++++ .+....+|..++|.+++.+.+..+||+.|++.+.+.++..++..+.
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999 7788999999999999999998999999999888877766665555


Q ss_pred             hcCCC
Q psy3615         181 VYDTP  185 (211)
Q Consensus       181 ~~~~~  185 (211)
                      .||++
T Consensus       166 ~~~~~  170 (377)
T PRK11102        166 IPETL  170 (377)
T ss_pred             CCccC
Confidence            66653

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.87  E-value=4.9e-22  Score=160.49  Aligned_cols=165  Identities=15%  Similarity=0.107  Sum_probs=143.3

Q ss_pred             cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      ..+.....+..+.+++++|+++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+++.+.  ++++.
T Consensus        25 ~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~  102 (405)
T TIGR00891        25 AFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFA--PGYIT  102 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHH
Confidence            4455666777788899999999999999999999999999999999999999999999999999998888777  88999


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC--chHHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG--WEAAFYVTGALGVVWW  174 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~~~~~~~~~~~  174 (211)
                      +++.|++.|++.+..++...+++.|++|+++|+++++ ......+|..+++.+.+.+.+..+  ||+.|++.+...++..
T Consensus       103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 779999999999999999888766  9999987655544433


Q ss_pred             HHHHhhhcCCC
Q psy3615         175 VVWMIVVYDTP  185 (211)
Q Consensus       175 ~~~~~~~~~~~  185 (211)
                       +.....||++
T Consensus       183 -~~~~~~~~~~  192 (405)
T TIGR00891       183 -WLRKNIPEAE  192 (405)
T ss_pred             -HHHHhCCCCh
Confidence             3333455543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=2.3e-21  Score=156.59  Aligned_cols=159  Identities=13%  Similarity=0.149  Sum_probs=142.1

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (211)
                      .+..|.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+.+..+.++.+++...+...  ++++.+++.|++
T Consensus        23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l  100 (392)
T PRK10473         23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLA--ETSSLFLAGRFL  100 (392)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999999999998888777  788889999999


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      .|++.+..++....++.|++|+++|+++++ .+....+|..++|.+++.+.+..+|++.|++.+.+.++..++..+..||
T Consensus       101 ~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~  180 (392)
T PRK10473        101 QGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKE  180 (392)
T ss_pred             HHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999889999999999999999999999 7788889999999999988888899999999888877776666555666


Q ss_pred             CC
Q psy3615         184 TP  185 (211)
Q Consensus       184 ~~  185 (211)
                      ++
T Consensus       181 ~~  182 (392)
T PRK10473        181 TR  182 (392)
T ss_pred             CC
Confidence            54

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.87  E-value=1e-21  Score=162.48  Aligned_cols=153  Identities=16%  Similarity=0.204  Sum_probs=128.0

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh----------cccHHHHHHHH
Q psy3615          33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA----------YWDYKAMAGLR  102 (211)
Q Consensus        33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~  102 (211)
                      .+++++..+.+++.+++.++.+++++++|+++||+|||++++++.++++++.+...+..          .+.++.+++.|
T Consensus        48 ~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R  127 (479)
T PRK10077         48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYR  127 (479)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHH
Confidence            34488999999999999999999999999999999999999999999988877665420          12256778999


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh--------cccCchHHHHHHHHHHHHH
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI--------DTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~--------~~~gw~~~~~~~~~~~~~~  173 (211)
                      ++.|++.|...+...++++|++|+++|+++++ ......+|..+++.++..+.        +..|||+.|++.++..++.
T Consensus       128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~  207 (479)
T PRK10077        128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF  207 (479)
T ss_pred             HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 77888999888877765443        4568999999887777665


Q ss_pred             HHHHHhhhcCCCC
Q psy3615         174 WVVWMIVVYDTPD  186 (211)
Q Consensus       174 ~~~~~~~~~~~~~  186 (211)
                      .+. .++.||+|+
T Consensus       208 ~~~-~~~l~~s~~  219 (479)
T PRK10077        208 LML-LYFVPETPR  219 (479)
T ss_pred             HHH-HHcCCCCcH
Confidence            544 455788764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.87  E-value=4.5e-21  Score=155.65  Aligned_cols=168  Identities=13%  Similarity=0.054  Sum_probs=145.9

Q ss_pred             ccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHH
Q psy3615          17 SLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYK   96 (211)
Q Consensus        17 ~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~   96 (211)
                      +..+...+.+..+.+.+++|+|+.+.++..+.+.+++.+++++.|+++||+|||+++..+..+.+++.+...+.  ++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~  102 (406)
T PRK15402         25 TYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA--QSIE  102 (406)
T ss_pred             HHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--ccHH
Confidence            34455556666677889999999999999999999999999999999999999999999999999988888777  7899


Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615          97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus        97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  175 (211)
                      .+++.|++.|++.+...+...+.+.|.+|+++|.+.++ ......++..++|.+++.+.++.+||+.|++.+++.++..+
T Consensus       103 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~  182 (406)
T PRK15402        103 QFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFF  182 (406)
T ss_pred             HHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            99999999999999888889999999999999999999 66777889999999999999989999999998888777666


Q ss_pred             HHHhhhcCCCC
Q psy3615         176 VWMIVVYDTPD  186 (211)
Q Consensus       176 ~~~~~~~~~~~  186 (211)
                      ..++..||+++
T Consensus       183 ~~~~~~~~~~~  193 (406)
T PRK15402        183 GLWRAMPETAG  193 (406)
T ss_pred             HHHHhCCCCCc
Confidence            55555666543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.87  E-value=9.4e-22  Score=168.43  Aligned_cols=165  Identities=13%  Similarity=0.046  Sum_probs=142.4

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      +...+....|.+.++++++..+.+++.+++.++.+++++++|+++||+|||++++++.++.+++.++..++  ++++.++
T Consensus       182 d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa--~s~~~ll  259 (742)
T TIGR01299       182 EVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV--QGYGFFL  259 (742)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hhHHHHH
Confidence            34456667778889999999999999999999999999999999999999999999999999998888877  8899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------------cCchHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------------LGWEAAFYV  165 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------------~gw~~~~~~  165 (211)
                      +.|++.|++.+...+...+++.|++|+++|++.++ ...++.+|.++++.++..+...             .+||+.+++
T Consensus       260 v~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i  339 (742)
T TIGR01299       260 FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV  339 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH
Confidence            99999999999999999999999999999999999 7799999999999887666543             358888887


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCC
Q psy3615         166 TGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      .++..++. ++..+++||+|+.
T Consensus       340 ~~lp~ll~-ll~~~~lPESPrw  360 (742)
T TIGR01299       340 CAFPCVFA-IGALTFMPESPRF  360 (742)
T ss_pred             HHHHHHHH-HHHHHHcCCCHHH
Confidence            76655544 4445668998864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.86  E-value=1.9e-21  Score=154.80  Aligned_cols=156  Identities=14%  Similarity=0.013  Sum_probs=136.8

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-----cH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-----DY   95 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-----~~   95 (211)
                      .....+..|.+..+++.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+.  +     ++
T Consensus        15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   92 (365)
T TIGR00900        15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFV--ALLGGLNI   92 (365)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHH--HHcCCCcH
Confidence            3344445555677889999999999999999999999999999999999999999999888887777666  4     88


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      +.+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++.+.+..+||+.|++.+...++..
T Consensus        93 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~  172 (365)
T TIGR00900        93 WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA  172 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 8899999999999999999999999999998777665554


Q ss_pred             HHHH
Q psy3615         175 VVWM  178 (211)
Q Consensus       175 ~~~~  178 (211)
                      ++.+
T Consensus       173 ~~~~  176 (365)
T TIGR00900       173 LLIV  176 (365)
T ss_pred             HHHH
Confidence            4433

>TIGR00895 2A0115 benzoate transport

Probab=99.86  E-value=3.4e-21  Score=155.06  Aligned_cols=164  Identities=20%  Similarity=0.237  Sum_probs=145.0

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG  100 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (211)
                      .....+..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.+..+..+.+++.++..+.  ++++.+++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  110 (398)
T TIGR00895        33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA--TNVTQLLI  110 (398)
T ss_pred             HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--cchHHHHH
Confidence            3445566777889999999999999999999999999999999999999999999999999988888777  78999999


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .+++.|++.+...+...+++.|++|+++|+++++ ......+|..+++.+.+++.+..+|++.+++.+.+..+..++...
T Consensus       111 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       111 LRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             HHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 779999999999999999999999999999887666666665555


Q ss_pred             hhcCCCC
Q psy3615         180 VVYDTPD  186 (211)
Q Consensus       180 ~~~~~~~  186 (211)
                      ..||+++
T Consensus       191 ~~~~~~~  197 (398)
T TIGR00895       191 FLPESID  197 (398)
T ss_pred             hCCCCCh
Confidence            5666543

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.86  E-value=8.7e-21  Score=153.37  Aligned_cols=164  Identities=15%  Similarity=0.121  Sum_probs=142.4

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG  100 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (211)
                      .....+..|.+.+++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+.+...  ++++.+++
T Consensus        24 ~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~  101 (394)
T PRK11652         24 QTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA--HSLTVLIA  101 (394)
T ss_pred             HHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--ccHHHHHH
Confidence            3444555677889999999999999999999999999999999999999999999999999988888776  88999999


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .|++.|++.+...+....+..|.+++++++++++ ...+..++..++|.+++.+.+..|||+.|++.+...++..++..+
T Consensus       102 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  181 (394)
T PRK11652        102 ASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMAR  181 (394)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888889999999999999999 778889999999999999999899999999988777665555445


Q ss_pred             hhcCCCC
Q psy3615         180 VVYDTPD  186 (211)
Q Consensus       180 ~~~~~~~  186 (211)
                      ..||+++
T Consensus       182 ~~~~~~~  188 (394)
T PRK11652        182 WMPETRP  188 (394)
T ss_pred             hCCccCc
Confidence            5666543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.85  E-value=2.1e-21  Score=158.40  Aligned_cols=149  Identities=15%  Similarity=0.015  Sum_probs=136.5

Q ss_pred             cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      ..+.....+..+.+++++|+|+.+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.+...+.  ++++.
T Consensus        31 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~  108 (426)
T PRK12307         31 GFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA--SGVIM  108 (426)
T ss_pred             HhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--hHHHH
Confidence            3455556677788899999999999999999999999999999999999999999999999999999988887  88999


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGA  168 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~  168 (211)
                      +++.|++.|++.+..++....++.|++|+++|+++++ ...+..+|..+++.+.+.+.+..+||+.|++...
T Consensus       109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 7799999999999999999888999999987543

>TIGR00898 2A0119 cation transport protein

Probab=99.85  E-value=1e-20  Score=157.60  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=138.4

Q ss_pred             cccCCCcccccCC---chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWD---SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLR  102 (211)
Q Consensus        26 ~~~~~i~~~~~~s---~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  102 (211)
                      +..+.+.+|+|++   +.+.++..+++.++..+++++.|+++||+|||+++.++.++.+++.++..++  ++++.+++.|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS--PNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc--ccHHHHHHHH
Confidence            4556789999999   8899999999999999999999999999999999999999999999888887  8999999999


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      ++.|++.+...+....++.|++|+++|+++.+ ...+..+|.++++.++..+.+   ||+.+++.++..++..+.. ++.
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~-~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLS-WFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHH-Hhc
Confidence            99999999999999999999999999999999 778889999999988766644   9999999888777665555 557


Q ss_pred             cCCCC
Q psy3615         182 YDTPD  186 (211)
Q Consensus       182 ~~~~~  186 (211)
                      ||+|+
T Consensus       264 ~esp~  268 (505)
T TIGR00898       264 PESPR  268 (505)
T ss_pred             CCChH
Confidence            88765

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.85  E-value=1e-20  Score=151.22  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=132.9

Q ss_pred             cccccccccccC-CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-cH
Q psy3615          18 LSSRGVLFQQDG-DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-DY   95 (211)
Q Consensus        18 ~~~~~~~~~~~~-~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-~~   95 (211)
                      +.......+..| .+++++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+.++.++.+++.+++.+.  + ++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--~~~~   91 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--VQSY   91 (366)
T ss_pred             HHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--hhhH
Confidence            344455666677 4889999999999999999999999999999999999999999999999999999988877  7 89


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc----------ccCchHHH-
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID----------TLGWEAAF-  163 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~-  163 (211)
                      +.+++.|++.|++.+ ..+....++.+++|+++|+++++ .....++|..+++.+++.+.+          ..+||+.| 
T Consensus        92 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~  170 (366)
T TIGR00886        92 SVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFV  170 (366)
T ss_pred             HHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhH
Confidence            999999999999865 45667889999999999999999 667777787777777665554          34899999 


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCC
Q psy3615         164 YVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      +..+.+..+..++.+...+|.|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~  192 (366)
T TIGR00886       171 IVPAGILLLPALLIFFVGADTP  192 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcccCC
Confidence            4445555444444444445544

>PRK11043 putative transporter; Provisional

Probab=99.85  E-value=1.3e-20  Score=152.62  Aligned_cols=158  Identities=17%  Similarity=0.085  Sum_probs=139.1

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      ...++.+..+.+++++|+++++.+++.+++.++..++++++|+++||+|||+++..+..+..++.+++.+.  ++++.++
T Consensus        21 ~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~   98 (401)
T PRK11043         21 ATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV--ESAAQLL   98 (401)
T ss_pred             HHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh--cCHHHHH
Confidence            34445555566789999999999999999999999999999999999999999999999999888888777  8899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.|++.|++.+...+...+++.|+++++++++..+ ......++..++|.+++++.+..|||+.|++.+.+.++..+..+
T Consensus        99 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043         99 VLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999988878888899999999999999988 77888899999999999999999999999998887777665554


Q ss_pred             h
Q psy3615         179 I  179 (211)
Q Consensus       179 ~  179 (211)
                      +
T Consensus       179 ~  179 (401)
T PRK11043        179 R  179 (401)
T ss_pred             H
Confidence            4

>KOG2533|consensus

Probab=99.85  E-value=2.2e-20  Score=153.38  Aligned_cols=165  Identities=21%  Similarity=0.327  Sum_probs=148.2

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g  110 (211)
                      +.++.+....+.+.+.+++.+++++++++++.+.||++..+.+....+++++..++....  +|++.+++.|+++|+.++
T Consensus        72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~--~s~~~~ialr~llGl~es  149 (495)
T KOG2533|consen   72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV--HSFPGLIALRFLLGLFES  149 (495)
T ss_pred             CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhc
Confidence            678899999999999999999999999999999999998888888888888877666666  899999999999999999


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh------cccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI------DTLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      ..+|....+++.|+.+++|++.++ ++...++|.++|..++..+.      ...||||.|++.+++.++..++.++++|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            999999999999999999999999 88999999999999998863      34689999999999999999999999999


Q ss_pred             CCCCCCCCChHHHH
Q psy3615         184 TPDQHPRVSAEEKE  197 (211)
Q Consensus       184 ~~~~~~~~~~~~~~  197 (211)
                      .|.+..-.+++|+.
T Consensus       230 ~P~~~~fl~~~ek~  243 (495)
T KOG2533|consen  230 NPSKAWFLTDEEKE  243 (495)
T ss_pred             ChhhccccchHHHH
Confidence            88766555555543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.84  E-value=4.5e-21  Score=159.31  Aligned_cols=168  Identities=17%  Similarity=0.245  Sum_probs=132.4

Q ss_pred             cccccccccccccCCCcccccCCchh-hHH-----HHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFHWDSNV-QNL-----VLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA   89 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~~s~~~-~~~-----~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~   89 (211)
                      ++.+|..++.+..+.+.++++.+.++ ..+     +.++..++..+++++.|+++||+|||+++.++.++++++.+++++
T Consensus        27 ~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~  106 (490)
T PRK10642         27 MEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL  106 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence            44567777777778888888644432 122     246778899999999999999999999999999999999999988


Q ss_pred             hhcccHHH--------HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh------
Q psy3615          90 AAYWDYKA--------MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI------  154 (211)
Q Consensus        90 ~~~~~~~~--------~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~------  154 (211)
                      +  ++++.        +++.|+++|++.|..++...++++|++|+++|++..+ ...+..+|..+++.+...+.      
T Consensus       107 ~--~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~  184 (490)
T PRK10642        107 I--PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEA  184 (490)
T ss_pred             c--ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            8  77754        7899999999999999999999999999999999988 76777778777776554432      


Q ss_pred             --cccCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615         155 --DTLGWEAAFYVTGALGVVWWVVWMIVVYDTPD  186 (211)
Q Consensus       155 --~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (211)
                        +.+|||+.|++.+.+.++.. +.....||+|+
T Consensus       185 ~~~~~gWR~~f~i~~~~~l~~~-~~~~~~~esp~  217 (490)
T PRK10642        185 NFLDWGWRIPFFIALPLGIIGL-YLRHALEETPA  217 (490)
T ss_pred             HhcCccHHHHHHHHHHHHHHHH-HHHHcCCCChh
Confidence              25799999999765555433 33345677654

>PRK10504 putative transporter; Provisional

Probab=99.84  E-value=1.3e-20  Score=155.76  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=144.9

Q ss_pred             ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615          19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM   98 (211)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~   98 (211)
                      .+...+.+..|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||++++.+..+.+++.+++.+.  ++++.+
T Consensus        24 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l  101 (471)
T PRK10504         24 LDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNEL  101 (471)
T ss_pred             HhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHH
Confidence            344555566777888999999999999999999999999999999999999999999999998888887776  789999


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      ++.|++.|++.+...+....++.|++|+++|+++.+ .....++|..++|.+++.+.++.|||+.|++......+..+..
T Consensus       102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~  181 (471)
T PRK10504        102 LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT  181 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 7788899999999999999999999999999887776666665


Q ss_pred             HhhhcCCC
Q psy3615         178 MIVVYDTP  185 (211)
Q Consensus       178 ~~~~~~~~  185 (211)
                      ....|+.+
T Consensus       182 ~~~~~~~~  189 (471)
T PRK10504        182 LMLMPNYT  189 (471)
T ss_pred             HHhCCCcc
Confidence            55555443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.84  E-value=6.1e-21  Score=156.19  Aligned_cols=156  Identities=16%  Similarity=0.101  Sum_probs=125.9

Q ss_pred             cccccccccccccCCCccccc---CCchhhHHHH---HHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFH---WDSNVQNLVL---GSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA   89 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~---~s~~~~~~~~---~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~   89 (211)
                      ++++|+..+++..+.+.++++   .+..+.+...   +...++..++++++|+++||+|||+++.++.++++++.+++++
T Consensus        33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~  112 (432)
T PRK10406         33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC  112 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence            456788888888888889884   4555444444   4445555599999999999999999999999999999999887


Q ss_pred             hhcccH--------HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh------
Q psy3615          90 AAYWDY--------KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI------  154 (211)
Q Consensus        90 ~~~~~~--------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~------  154 (211)
                      .  +++        ..+++.|+++|++.|..++...++++|++|+++|+++.+ .+.+...|..+++.+...+.      
T Consensus       113 ~--~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~  190 (432)
T PRK10406        113 L--PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDA  190 (432)
T ss_pred             c--CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            7  554        368899999999999999999999999999999999999 77777778777776654433      


Q ss_pred             --cccCchHHHHHHHHHHHHH
Q psy3615         155 --DTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus       155 --~~~gw~~~~~~~~~~~~~~  173 (211)
                        +.+|||++|++.++..++.
T Consensus       191 ~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        191 ELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHhccchHHHHHHHHHHHHHH
Confidence              2579999999877766554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.84  E-value=2e-20  Score=154.01  Aligned_cols=167  Identities=13%  Similarity=0.129  Sum_probs=135.7

Q ss_pred             ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--cccHH
Q psy3615          19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--YWDYK   96 (211)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--~~~~~   96 (211)
                      .++..+.+..|++.++ |++..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+.+.+..  .++++
T Consensus        43 ~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~  121 (452)
T PRK11273         43 LVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA  121 (452)
T ss_pred             HHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHH
Confidence            3444455666778887 99999999999999999999999999999999999999999999998888776642  13677


Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615          97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVA-LSYPLCGVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus        97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~-~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      .+++.|++.|++.+..++.....+.+++|+++|+++++ .+.+..+|.. .+|.+...+....+||+.|++.+.+.++..
T Consensus       122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~  201 (452)
T PRK11273        122 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA  201 (452)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            88999999999999888888888999999999999999 7788888764 455543333334589999999888877766


Q ss_pred             HHHHhhhcCCCC
Q psy3615         175 VVWMIVVYDTPD  186 (211)
Q Consensus       175 ~~~~~~~~~~~~  186 (211)
                      ++..++.||+|+
T Consensus       202 ~l~~~~~~~~~~  213 (452)
T PRK11273        202 LFAFAMMRDTPQ  213 (452)
T ss_pred             HHHHHHccCCHh
Confidence            666666676654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.84  E-value=3.2e-20  Score=152.58  Aligned_cols=165  Identities=18%  Similarity=0.240  Sum_probs=137.2

Q ss_pred             cccccccccCCCcccccCC--------chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh
Q psy3615          20 SRGVLFQQDGDSGSLFHWD--------SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA   91 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s--------~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~   91 (211)
                      +...+....+.+..+++.+        ..+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.+..
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~  122 (481)
T TIGR00879        43 DTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA  122 (481)
T ss_pred             ccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455555666677777766        78999999999999999999999999999999999999999999888875542


Q ss_pred             -cccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh---hhhhcccCchHHHHHH
Q psy3615          92 -YWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC---GVVIDTLGWEAAFYVT  166 (211)
Q Consensus        92 -~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~---~~l~~~~gw~~~~~~~  166 (211)
                       ..+++.+++.|++.|++.+...+....++.|++|+++|+++++ .+....+|..+++.++   ....+..+||+.|++.
T Consensus       123 ~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~  202 (481)
T TIGR00879       123 FALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ  202 (481)
T ss_pred             cccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHH
Confidence             2345689999999999999999999999999999999999999 7799999999999998   6666778999999996


Q ss_pred             HHHHHHHHHHHHhhhcCCC
Q psy3615         167 GALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~  185 (211)
                      +...++..+. .++.||+|
T Consensus       203 ~~~~~~~~~~-~~~l~~~~  220 (481)
T TIGR00879       203 LIPAGLLFLG-LFFLPESP  220 (481)
T ss_pred             HHHHHHHHHH-HhcCCCCh
Confidence            5555444333 34466665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.83  E-value=1.4e-20  Score=156.45  Aligned_cols=149  Identities=16%  Similarity=0.154  Sum_probs=136.2

Q ss_pred             cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      ..+.....+..|.+.+++|+|+.+.+++.+.+.+++.++.++.|+++||+|||+++..+.++.+++.++..+.  ++++.
T Consensus        33 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~  110 (496)
T PRK03893         33 GFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA--PGYWT  110 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH--hHHHH
Confidence            3455666677788899999999999999999999999999999999999999999999999999998888877  88999


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGA  168 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~  168 (211)
                      +++.|++.|++.+..++....++.|++|+++|+++++ ......+|..++|.+.+.+.+..+||+.|++...
T Consensus       111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 7788999999999999999999999999887443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.83  E-value=1.2e-19  Score=151.14  Aligned_cols=149  Identities=19%  Similarity=0.195  Sum_probs=126.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc------HHHHHHHHHHHHhhh
Q psy3615          36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD------YKAMAGLRIVQGVIG  109 (211)
Q Consensus        36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~l~G~~~  109 (211)
                      +.+..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.+++.++  ++      ++.+++.|++.|++.
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~r~l~G~~~  129 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLS--PGSSPKSVMATLCFWRFWLGVGI  129 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc--cCcccchHHHHHHHHHHHHHHHH
Confidence            4556678899999999999999999999999999999999999999988887766  33      678999999999999


Q ss_pred             hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-----------------------ccCchHHHHH
Q psy3615         110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-----------------------TLGWEAAFYV  165 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-----------------------~~gw~~~~~~  165 (211)
                      |...+....+++|++|+++|+++++ .+....+|..+++.+...+..                       ..+||+.+.+
T Consensus       130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~  209 (502)
T TIGR00887       130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF  209 (502)
T ss_pred             hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence            9999999999999999999999999 778899999988888765432                       2379999987


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCC
Q psy3615         166 TGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      .++..++..+. .+++||+|+.
T Consensus       210 ~~ip~~i~~~~-~~~lpESpr~  230 (502)
T TIGR00887       210 GAVPALLALYF-RLTIPETPRY  230 (502)
T ss_pred             HHHHHHHHHHH-HHhCCCCHHH
Confidence            76665554443 4568999874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.83  E-value=5.7e-20  Score=149.04  Aligned_cols=159  Identities=18%  Similarity=0.134  Sum_probs=140.7

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL  101 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (211)
                      .+++.+++++++++|+|+.+.|.+.+...+...+.+++.|+++||+|||+++.++.++.+++.+++.+.  ++++.+++.
T Consensus        28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~  105 (400)
T PRK11646         28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--HEPWLLWLS  105 (400)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence            344555666788999999999999999999999999999999999999999999999999999988777  789999999


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      |++.|++.+...+...+++.+++|+++|+++++ .....++|..+||.+++++. ..+|++.|++.+...++..++..+.
T Consensus       106 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        106 CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999998888999999999999999999999 78999999999999999998 6799999999887776665554444


Q ss_pred             hcC
Q psy3615         181 VYD  183 (211)
Q Consensus       181 ~~~  183 (211)
                      .||
T Consensus       185 ~~~  187 (400)
T PRK11646        185 LPA  187 (400)
T ss_pred             CCc
Confidence            554

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.83  E-value=3.1e-20  Score=149.68  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=137.9

Q ss_pred             cccccccccCCCcccccCCchh-hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNV-QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM   98 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~-~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~   98 (211)
                      -|..+++..|++.+++|+|+++ .|.+.+.+..++++++++.|+++||+|.|+++.++.+.+++..++.+++  +++..+
T Consensus        41 ~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--~Sl~~L  118 (511)
T TIGR00806        41 FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--TSVWHM  118 (511)
T ss_pred             hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            3455667778899999999999 9999999999999999999999999999999999999999999999888  889999


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHH--HHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVT--GALGVVWWV  175 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~--~~~~~~~~~  175 (211)
                      .+.|++.|++.|..+ +...++.+|+|+++|+++.+ ...+..+|.+++++++++ ...+|||+-+...  .+...+..+
T Consensus       119 ~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~  196 (511)
T TIGR00806       119 QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSV  196 (511)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHH
Confidence            999999999999999 99999999999999999999 889999999999999999 5567998754433  222223333


Q ss_pred             HHHhhhcCC
Q psy3615         176 VWMIVVYDT  184 (211)
Q Consensus       176 ~~~~~~~~~  184 (211)
                      ++.+++|..
T Consensus       197 ~~a~~LP~~  205 (511)
T TIGR00806       197 FLALFLKRP  205 (511)
T ss_pred             HHHHhCCCC
Confidence            334456633

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10054 putative transporter; Provisional

Probab=99.83  E-value=4.2e-20  Score=149.62  Aligned_cols=159  Identities=11%  Similarity=0.059  Sum_probs=137.0

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLR  102 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  102 (211)
                      ..+.+++++++++|+|..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++..+.  ++++.+++.+
T Consensus        26 ~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  103 (395)
T PRK10054         26 TLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV--NNVTLVVLFF  103 (395)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH--hHHHHHHHHH
Confidence            34456677788999999999999999999999999999999999999999999999988888888777  7888888889


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      .+.|.+.+...+....+..|..|+++|+++++ .+...++|..++|++++.+.+ .+|+..|+..++..++..++..+..
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~  182 (395)
T PRK10054        104 ALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWV  182 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHH
Confidence            88888877778888999999999999999999 888899999999999998875 6899999988777766655544445


Q ss_pred             cCC
Q psy3615         182 YDT  184 (211)
Q Consensus       182 ~~~  184 (211)
                      |++
T Consensus       183 ~~~  185 (395)
T PRK10054        183 QRS  185 (395)
T ss_pred             hcc
Confidence            443

>PRK03699 putative transporter; Provisional

Probab=99.83  E-value=3.2e-20  Score=150.21  Aligned_cols=155  Identities=12%  Similarity=0.033  Sum_probs=136.6

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG  100 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (211)
                      ...+....|++.+++|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+..+.+++.++..+.  ++++.+++
T Consensus        23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~  100 (394)
T PRK03699         23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSI  100 (394)
T ss_pred             HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHH
Confidence            3445666778899999999999999999999999999999999999999999999999999998888777  88999999


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHHHHHHHHHHHHHHH
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      .|++.|++.+...+....++.|++|+++|+++++ .+....+|..++|.+.+.+.+ ..+||+.|.+.+.+.++..++.
T Consensus       101 ~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        101 AMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             HHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888999999999999999999 778888898999999887764 5799999998887766655443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.83  E-value=4.5e-20  Score=151.31  Aligned_cols=167  Identities=14%  Similarity=0.173  Sum_probs=138.2

Q ss_pred             ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--cccHH
Q psy3615          19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--YWDYK   96 (211)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--~~~~~   96 (211)
                      .++..+....|.+++ +|+|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++..+..  .++++
T Consensus        41 ~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (438)
T TIGR00712        41 LVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIA  119 (438)
T ss_pred             HHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHH
Confidence            344445555666665 599999999999999999999999999999999999999999999988887765431  13567


Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHHHHHHHHHHHH
Q psy3615          97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus        97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~~~~~~~~~~~  174 (211)
                      .+.+.|++.|++.+..++.....+.|++|+++|+++++ .+....+|..+++++.+...+ ..+||+.|++.+++.++..
T Consensus       120 ~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~  199 (438)
T TIGR00712       120 IMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVA  199 (438)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            77889999999999998989999999999999999999 778889999998888776444 4689999999988887766


Q ss_pred             HHHHhhhcCCCC
Q psy3615         175 VVWMIVVYDTPD  186 (211)
Q Consensus       175 ~~~~~~~~~~~~  186 (211)
                      ++.+++.||+|+
T Consensus       200 ~~~~~~~~~~~~  211 (438)
T TIGR00712       200 LFAFAMMRDTPQ  211 (438)
T ss_pred             HHHHHhccCCHH
Confidence            666666666543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.83  E-value=1.2e-19  Score=145.32  Aligned_cols=159  Identities=12%  Similarity=0.023  Sum_probs=131.2

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHH-HHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGV-SNLAMFLISFALPAAAYWDYKAMAGLRIVQ  105 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~  105 (211)
                      .++++++++|.|+.+.+++.+.+.+...+.+++.|+++||+||||.++. +.....++.+++.++  ++++.+++.|++.
T Consensus        20 l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~   97 (375)
T TIGR00899        20 LSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWN--RNYFLLLVLGVLL   97 (375)
T ss_pred             HHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHH
Confidence            4445788999999999999999999999999999999999999987654 555555666667666  7888888999999


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhH--hh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQF--IT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY  182 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~--~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      |.+.+...|...++..|+.|+++|.+.  .+ .....++|..++|++++.+.+..+||+.|++.+.+.++..++.++..|
T Consensus        98 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899        98 SSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             HhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            888777888888888999887777754  45 557788999999999999999899999999998887777666666677


Q ss_pred             CCCCC
Q psy3615         183 DTPDQ  187 (211)
Q Consensus       183 ~~~~~  187 (211)
                      |.|++
T Consensus       178 ~~~~~  182 (375)
T TIGR00899       178 SYPRG  182 (375)
T ss_pred             CcccC
Confidence            65543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK12382 putative transporter; Provisional

Probab=99.82  E-value=1.5e-19  Score=146.04  Aligned_cols=141  Identities=16%  Similarity=0.095  Sum_probs=121.3

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hh---hcccHHHHHHHHH
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AA---AYWDYKAMAGLRI  103 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~---~~~~~~~~~~~~~  103 (211)
                      ++++++|+|..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+...++.+...   ..   ..++++.+++.|+
T Consensus        41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (392)
T PRK12382         41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL  120 (392)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999998887766544321   11   1246788999999


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHH
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALG  170 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~  170 (211)
                      +.|++.+...+...+++.|++|+++|+++++ .......|..++|++++.+.+..||++.+.+.....
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~  188 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLP  188 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            9999999888888999999999999999999 778889999999999999999899998776654443

>KOG3764|consensus

Probab=99.82  E-value=3.2e-19  Score=139.22  Aligned_cols=150  Identities=21%  Similarity=0.207  Sum_probs=139.4

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcc
Q psy3615          33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLA  112 (211)
Q Consensus        33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~  112 (211)
                      ++.+-...++|++.++..+.+.+.+++.|.+.||+|+|..+++|.+++....+++++.  +++++++++|.++|+|.+..
T Consensus        99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg--~sy~~l~vAR~LQgvgsA~~  176 (464)
T KOG3764|consen   99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG--NSYPMLFVARSLQGVGSAFA  176 (464)
T ss_pred             cCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHhhhhHHHH
Confidence            4455566789999999999999999999999999999999999999999999999888  89999999999999999999


Q ss_pred             hHHHHHHhhhccCCC-chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615         113 WPSMHHLVAHWIPPT-ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       113 ~~~~~~~~~~~~~~~-~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  184 (211)
                      ..+..+++++.+|++ +|++++| ...+.++|..+||+++|.+.+..|.+.+|.+.++++++...+.++.++++
T Consensus       177 ~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  177 DTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             HhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence            999999999999987 5899999 88999999999999999999999999999999999999888887766543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.82  E-value=1.1e-19  Score=147.22  Aligned_cols=152  Identities=14%  Similarity=0.069  Sum_probs=128.1

Q ss_pred             cccccccc-CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-c-----c
Q psy3615          21 RGVLFQQD-GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-Y-----W   93 (211)
Q Consensus        21 ~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~-----~   93 (211)
                      .+...+.. ..+++++|.|+.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++...+.+.. .     .
T Consensus        31 ~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (399)
T PRK05122         31 IGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVL  110 (399)
T ss_pred             HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchh
Confidence            33333343 446789999999999999999999999999999999999999999999988877665544321 0     1


Q ss_pred             cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615          94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV  172 (211)
Q Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~  172 (211)
                      +++.+++.|++.|++.+...+....++.|+.|+++|+++++ ......+|..+++.+++.+.+..||+..+++.....++
T Consensus       111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999 77888999999999999999999999988876655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.82  E-value=1.8e-19  Score=146.06  Aligned_cols=160  Identities=19%  Similarity=0.217  Sum_probs=135.4

Q ss_pred             ccccccCCCcccccCCchh-----hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          23 VLFQQDGDSGSLFHWDSNV-----QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~-----~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      ...+..|.+.+++|++..+     .+++.+++.++..+++++.|+++||+|||+++..+.+..+++.+++.+.  ++++.
T Consensus        32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~  109 (408)
T PRK09874         32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA--QNIWQ  109 (408)
T ss_pred             HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH--hhHHH
Confidence            3344555567788888654     4888999999999999999999999999999999999988888877766  78999


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      +++.|++.|++.+ ..+....++.++.|+++|+++++ ......+|..++|.+++.+.+..+|++.|++.+.+.++..+.
T Consensus       110 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (408)
T PRK09874        110 FLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV  188 (408)
T ss_pred             HHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9999999999765 56777888999999999999999 778889999999999999999899999999988887776666


Q ss_pred             HHhhhcCCC
Q psy3615         177 WMIVVYDTP  185 (211)
Q Consensus       177 ~~~~~~~~~  185 (211)
                      ..+..+|++
T Consensus       189 ~~~~~~~~~  197 (408)
T PRK09874        189 TLFCIRENF  197 (408)
T ss_pred             HHHHhccCc
Confidence            655566543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.82  E-value=1.1e-19  Score=149.61  Aligned_cols=161  Identities=11%  Similarity=0.110  Sum_probs=136.9

Q ss_pred             ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615          19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM   98 (211)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~   98 (211)
                      .++..++...+.+.+++|++.++.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.+++.+.  ++++.+
T Consensus        33 ~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--~~~~~l  110 (455)
T TIGR00892        33 AFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS--SNVIEL  110 (455)
T ss_pred             hhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh--hhHHHH
Confidence            344445556677889999999999999999999999999999999999999999999999999988888777  778877


Q ss_pred             HH-HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615          99 AG-LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus        99 ~~-~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      ++ .|++.|++.+...+....++.++++ ++|+++++ .+.+..+|..++|++.+.+.+..|||++|++.+++.++..+.
T Consensus       111 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~  189 (455)
T TIGR00892       111 YLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVC  189 (455)
T ss_pred             HHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            65 5689999998776777788899996 78999999 889999999999999999999999999999998887765554


Q ss_pred             HHhhhc
Q psy3615         177 WMIVVY  182 (211)
Q Consensus       177 ~~~~~~  182 (211)
                      .++..+
T Consensus       190 ~~~~~~  195 (455)
T TIGR00892       190 GALMRP  195 (455)
T ss_pred             HHHhCC
Confidence            444333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.81  E-value=1.4e-19  Score=149.92  Aligned_cols=159  Identities=11%  Similarity=0.022  Sum_probs=130.1

Q ss_pred             cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615          24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      ..+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++..+.  ++++.+++.|+
T Consensus        55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~r~  132 (476)
T PLN00028         55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV--SSATGFIAVRF  132 (476)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence            4455667899999999999999999999999999999999999999999999999999988888777  78899999999


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh----c-----ccCchHHHHHHHHHHHHH
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI----D-----TLGWEAAFYVTGALGVVW  173 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~----~-----~~gw~~~~~~~~~~~~~~  173 (211)
                      +.|++.+.. .....++++++|+++|+++++ .....++|..+++.+...+.    +     ..|||+.|++.+++.++.
T Consensus       133 l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~  211 (476)
T PLN00028        133 FIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIM  211 (476)
T ss_pred             HHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH
Confidence            999988764 345668899999999999999 76666677766665554432    2     258999999999888777


Q ss_pred             HHHHHhhhcCCC
Q psy3615         174 WVVWMIVVYDTP  185 (211)
Q Consensus       174 ~~~~~~~~~~~~  185 (211)
                      .++.++..++.|
T Consensus       212 ~l~~~~~~~~~p  223 (476)
T PLN00028        212 GILVLTLGQDLP  223 (476)
T ss_pred             HHHHHHHcCcCC
Confidence            666655444444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.81  E-value=1.2e-19  Score=146.83  Aligned_cols=149  Identities=14%  Similarity=0.008  Sum_probs=125.6

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      .+.+++|.+..+.+++.+.+.+.+.+.+++.|+++||+|||++++++.++.+++.+.+.+.  .+.   ++.|+++|++.
T Consensus        28 ~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~--~~~---~~~r~l~G~~~  102 (393)
T PRK11195         28 ALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG--IHP---LLAYGLVGIGA  102 (393)
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH--HHH---HHHHHHHHHHH
Confidence            3567889899999999999999999999999999999999999999999998888776655  443   67899999999


Q ss_pred             hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      +...|...+++.|++|+++|+++++ ......+|..+||.+++.+.+. .|+..+.+.+...++.. +..+..||++
T Consensus       103 a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        103 AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            9999999999999999999999999 7788999999999999999885 47777766655443333 3334466654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.81  E-value=2.2e-19  Score=146.04  Aligned_cols=156  Identities=12%  Similarity=0.096  Sum_probs=135.3

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAG  100 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~  100 (211)
                      +...+..|.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.+++... ..++++.+++
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~   99 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLV   99 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            445567788899999999999999999999999999999999999999999999999999988775432 1257899999


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-----------------------
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-----------------------  156 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-----------------------  156 (211)
                      .|++.|++.|...+..+.++.+..|+++|++.++ .+...++|..++|.+++.+...                       
T Consensus       100 ~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (410)
T TIGR00885       100 GLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKH  179 (410)
T ss_pred             HHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHH
Confidence            9999999999999999999999999999999999 7899999999999998877422                       


Q ss_pred             ---cCchHHHHHHHHHHHHHHHHH
Q psy3615         157 ---LGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       157 ---~gw~~~~~~~~~~~~~~~~~~  177 (211)
                         .+||++|++.+.+.++..++.
T Consensus       180 ~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       180 SDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence               359999998888766654443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09952 shikimate transporter; Provisional

Probab=99.81  E-value=6.7e-20  Score=150.32  Aligned_cols=154  Identities=16%  Similarity=0.197  Sum_probs=121.8

Q ss_pred             cccccccccccccCC-Ccccc--cCCchhhHHHH-----HHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh
Q psy3615          16 ISLSSRGVLFQQDGD-SGSLF--HWDSNVQNLVL-----GSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL   87 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~-i~~~~--~~s~~~~~~~~-----~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~   87 (211)
                      ++++|..++....+. +.+++  +.++. .+++.     ++..++..+++++.|+++||+|||+++.++.++++++.+++
T Consensus        33 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~  111 (438)
T PRK09952         33 VDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALI  111 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            345566666655442 34444  56655 45443     34456677889999999999999999999999999999999


Q ss_pred             hhhhcccHH--------HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh----
Q psy3615          88 PAAAYWDYK--------AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI----  154 (211)
Q Consensus        88 ~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~----  154 (211)
                      +++  +++.        .+++.|+++|++.|..++....++.|++|+++|++..+ ...+..+|..++..+...+.    
T Consensus       112 ~~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~  189 (438)
T PRK09952        112 GLL--PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTT  189 (438)
T ss_pred             hcC--CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            888  7765        58889999999999999999999999999999999999 77888889888877766554    


Q ss_pred             ----cccCchHHHHHHHHHHHH
Q psy3615         155 ----DTLGWEAAFYVTGALGVV  172 (211)
Q Consensus       155 ----~~~gw~~~~~~~~~~~~~  172 (211)
                          +.+|||.+|++.++..++
T Consensus       190 ~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        190 DEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHhhccChHHHHHHHHHHHHH
Confidence                247999999987766544

>PRK15075 citrate-proton symporter; Provisional

Probab=99.81  E-value=9.1e-20  Score=149.35  Aligned_cols=152  Identities=13%  Similarity=0.103  Sum_probs=125.6

Q ss_pred             ccccccccccccccCCCcccccCCchhhHHHH-HHH-----HHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh
Q psy3615          15 PISLSSRGVLFQQDGDSGSLFHWDSNVQNLVL-GSF-----FWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP   88 (211)
Q Consensus        15 ~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~-~~~-----~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~   88 (211)
                      .+.+.|+..+.+..|.+.++++.++.+.+... +..     .++..+++++.|+++||+|||++++.+..+.+++.+++.
T Consensus        25 ~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~  104 (434)
T PRK15075         25 FLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA  104 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999888765443 222     222346789999999999999999999999999999998


Q ss_pred             hhhcccHH--------HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh------
Q psy3615          89 AAAYWDYK--------AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV------  153 (211)
Q Consensus        89 ~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l------  153 (211)
                      ++  ++++        .+++.|++.|++.+...+....+++|++|+++|+++++ .....++|..+++.+++.+      
T Consensus       105 ~~--~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~  182 (434)
T PRK15075        105 FV--PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSP  182 (434)
T ss_pred             hC--CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            87  6765        46889999999999999999999999999999999999 6677778887777777665      


Q ss_pred             --hcccCchHHHHHHHH
Q psy3615         154 --IDTLGWEAAFYVTGA  168 (211)
Q Consensus       154 --~~~~gw~~~~~~~~~  168 (211)
                        .+..|||+.|++...
T Consensus       183 ~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        183 AQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHhccchHHHHHHHHH
Confidence              246799999987543

>TIGR00897 2A0118 polyol permease family

Probab=99.80  E-value=8e-19  Score=142.42  Aligned_cols=153  Identities=12%  Similarity=-0.012  Sum_probs=123.5

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hh-cccHHHHHHHHHHHHhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AA-YWDYKAMAGLRIVQGVI  108 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~l~G~~  108 (211)
                      +.+++|+|+.+.+++.+.+.++..+++++.|++.||+|||+++..+..+.+++.+++.+ .. .++++.+++.|++.|++
T Consensus        39 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g  118 (402)
T TIGR00897        39 FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLG  118 (402)
T ss_pred             HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcc
Confidence            44789999999999999999999999999999999999999999999999887665432 11 24678888999999999


Q ss_pred             hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhh-hhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGV-ALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~-~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      .+...+.....+.+++|+++|+++++ .....++|. .++|.+++++.+..||+..++.......+..++.++..++
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       119 YPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKD  195 (402)
T ss_pred             hHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCC
Confidence            88877778888899999999999999 778888886 5899999999888897766665544433333333343444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.80  E-value=6.1e-19  Score=143.74  Aligned_cols=167  Identities=11%  Similarity=0.062  Sum_probs=133.1

Q ss_pred             ccccccccccccCCCcc-cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh---c
Q psy3615          17 SLSSRGVLFQQDGDSGS-LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA---Y   92 (211)
Q Consensus        17 ~~~~~~~~~~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~---~   92 (211)
                      ++......+++.+.+.+ ++|+|++|.+++.+++.+++.+.+++.|++.||+|+|+++.++.++.++..++..++.   .
T Consensus        46 ~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~  125 (462)
T PRK15034         46 AFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN  125 (462)
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            34455566676677665 8999999999999999999999999999999999999999999999999888887642   2


Q ss_pred             ccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh-----c-----------
Q psy3615          93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI-----D-----------  155 (211)
Q Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-----~-----------  155 (211)
                      ++++.+++.|++.|++ +..++.....+++++|+++||++++ .....++|..+++++...+.     +           
T Consensus       126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~  204 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQAD  204 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            6799999999999998 7788999999999999999999999 64666666665555443322     2           


Q ss_pred             --ccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615         156 --TLGWEAAFYVTGALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       156 --~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  184 (211)
                        ..+||.+.++...+.++..++.++..++.
T Consensus       205 g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        205 GSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence              23477777787777777666666655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.80  E-value=2.7e-19  Score=148.29  Aligned_cols=143  Identities=18%  Similarity=0.176  Sum_probs=126.0

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHH-HHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYK-AMAGLR  102 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~  102 (211)
                      ..+..++++++|++..+.+++.+.+.....+..+++|+++|| +||||+++++.++++++.+.+.+.  .+.. .+++.|
T Consensus        35 ~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~--~~~~~ll~~~~  112 (489)
T PRK10207         35 GILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS--LLKPDLIFIAL  112 (489)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHH
Confidence            445556788899999999999999998888999999999999 999999999999999999988876  4433 455789


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHH
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGAL  169 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~  169 (211)
                      .++|++.|...+...+++.|.+|++  +|+++.+ .+...++|..++|.+++++.++.|||+.|++.++.
T Consensus       113 ~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        113 GTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             HHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            9999999999999999999999887  4577888 88999999999999999999999999999986543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.80  E-value=2.6e-19  Score=140.95  Aligned_cols=171  Identities=14%  Similarity=0.154  Sum_probs=150.3

Q ss_pred             cccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-ccc
Q psy3615          16 ISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-YWD   94 (211)
Q Consensus        16 ~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~~~   94 (211)
                      +++.-..+++++.+.+++++|+|++|.+++.++..+...+..++.|.+.||||.|++...+.++..+..+...++. .++
T Consensus        25 v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~  104 (417)
T COG2223          25 VGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS  104 (417)
T ss_pred             HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            3455667778888899999999999999999999999999999999999999999999999999999988887763 334


Q ss_pred             HHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccC---chHHHHHHHHHHH
Q psy3615          95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLG---WEAAFYVTGALGV  171 (211)
Q Consensus        95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~g---w~~~~~~~~~~~~  171 (211)
                      ++.+++.+++.|++ |..++.....+++++|++++|.++|++...++|..+...++..+....+   |+....+.....+
T Consensus       105 ~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~  183 (417)
T COG2223         105 TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAGAGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALA  183 (417)
T ss_pred             hHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhccccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66999999999998 4577888999999999999999999555999999999999888888888   9999999888888


Q ss_pred             HHHHHHHhhhcCCCCC
Q psy3615         172 VWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       172 ~~~~~~~~~~~~~~~~  187 (211)
                      +..+..++...|.|..
T Consensus       184 v~~v~~~~~~~d~p~~  199 (417)
T COG2223         184 IAAVLAWLGMNDVPEH  199 (417)
T ss_pred             HHHHHHHHHhCCChhh
Confidence            8888888878777664

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.79  E-value=5.6e-19  Score=146.12  Aligned_cols=152  Identities=16%  Similarity=0.126  Sum_probs=133.1

Q ss_pred             ccccccCCCccc--ccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          23 VLFQQDGDSGSL--FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        23 ~~~~~~~~i~~~--~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      +.+.++.+++++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++..+.  ++++.+.
T Consensus        29 ~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~--~~~~~~~  106 (475)
T TIGR00924        29 MQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS--IYPDLIF  106 (475)
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc--ccHhHHH
Confidence            344455556666  99999999999999999999999999999999 899999999999999999888776  6778888


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCc---hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTE---RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  175 (211)
                      +.+.+.|++.|...+...+++++++|+++   |+++.+ .+...++|..+||.+++++.++.||++.|++.++..++..+
T Consensus       107 ~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l  186 (475)
T TIGR00924       107 YGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLL  186 (475)
T ss_pred             HHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999998764   888999 88999999999999999999989999999987765554433


Q ss_pred             H
Q psy3615         176 V  176 (211)
Q Consensus       176 ~  176 (211)
                      .
T Consensus       187 ~  187 (475)
T TIGR00924       187 T  187 (475)
T ss_pred             H
Confidence            3

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.79  E-value=8.6e-19  Score=138.55  Aligned_cols=156  Identities=24%  Similarity=0.344  Sum_probs=140.0

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      +.....+..+.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+.+..+..+..++.+...+.  ++++.++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~   91 (352)
T cd06174          14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA--SSLWLLL   91 (352)
T ss_pred             hhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence            34445555566778889999999999999999999999999999999999999999999999999988777  8899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      +.|++.|++.+...+....++.|++|+++|++.++ ......+|..++|.+++.+.+..+|++.+++.+...++..+..
T Consensus        92 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174          92 VGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 8899999999999999999998899999998877766655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0255|consensus

Probab=99.79  E-value=1.7e-18  Score=144.93  Aligned_cols=150  Identities=19%  Similarity=0.172  Sum_probs=131.7

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcc
Q psy3615          33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLA  112 (211)
Q Consensus        33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~  112 (211)
                      +.++.+........+++.+|..++.+++|.++||+|||+++++++++..++.++.+++  +|++.+++.|++.|++.+..
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a--~~~~~~~~~Rfl~G~~~~~~  188 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA--PNYWMFLIFRFLSGFFGSGP  188 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHhhccch
Confidence            5667777888999999999999999999999999999999999999999999999888  99999999999999999999


Q ss_pred             hHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615         113 WPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      ......+++|++++++|+.+.........++.++++.++++.+  +||+.+++.....++..++ ++..+|+|+.
T Consensus       189 ~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rw  260 (521)
T KOG0255|consen  189 LTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESPRW  260 (521)
T ss_pred             hHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcChHH
Confidence            9999999999999999999998544445555667777777777  8999999998888877666 4546688775

>TIGR00896 CynX cyanate transporter

Probab=99.78  E-value=1.9e-18  Score=137.94  Aligned_cols=147  Identities=12%  Similarity=-0.034  Sum_probs=127.0

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL  101 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (211)
                      ....+..|.+++++|+|+.+.+++.+.+.++..+++++.|++.||+|||+++.++.++.+++.+.+ ..  ++.+.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA--PGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh--ccHHHHHHH
Confidence            345667788999999999999999999999999999999999999999999999998888877766 45  778888999


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc--CchHHHHHHHHHHHH
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL--GWEAAFYVTGALGVV  172 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~--gw~~~~~~~~~~~~~  172 (211)
                      |++.|++.+...+.....+.|+++ ++|+++++ ......+|..+++.+.+.+.+..  +||+.|...++..++
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            999999999888888888899886 68999999 77889999999999998887764  389888876655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.78  E-value=2.9e-19  Score=152.04  Aligned_cols=160  Identities=16%  Similarity=0.205  Sum_probs=137.8

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--------
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--------   91 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--------   91 (211)
                      ..+......+.++++++++..+.|++.+.+.++++++.++.+++.||+|||+.+.++.++++++.+++++.+        
T Consensus        48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~  127 (633)
T TIGR00805        48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSY  127 (633)
T ss_pred             HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccc
Confidence            345666777889999999999999999999999999999999999999999999999999999999887652        


Q ss_pred             -----------------------------------------cccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchh
Q psy3615          92 -----------------------------------------YWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERS  130 (211)
Q Consensus        92 -----------------------------------------~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~  130 (211)
                                                               ...+..++++|+++|+|.+..++...+++.|++|+++|+
T Consensus       128 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~  207 (633)
T TIGR00805       128 STTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP  207 (633)
T ss_pred             cccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH
Confidence                                                     002456788999999999999999999999999999999


Q ss_pred             hHhh-hhhcchhhhhhhhhhhhhhhccc----------------------CchHHHHHHHHHHHHHHHHHHh
Q psy3615         131 QFIT-SYLGSSFGVALSYPLCGVVIDTL----------------------GWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       131 ~~~~-~~~~~~~g~~~~~~~~~~l~~~~----------------------gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ++++ .+....+|..+|+++++++.+.+                      +|+..|++.+++.++..+..++
T Consensus       208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       208 LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999 88999999999999999887542                      2677788888777776655444

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10133 L-fucose transporter; Provisional

Probab=99.78  E-value=1.5e-18  Score=142.29  Aligned_cols=134  Identities=14%  Similarity=0.078  Sum_probs=116.4

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hhcccHHHHH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AAYWDYKAMA   99 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~   99 (211)
                      +....+..|.+++++|+|+.+.++..+.+.+++.+++++.|++.||+|||+++..+..+++++.+++.. ...++++.++
T Consensus        42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll  121 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL  121 (438)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            344556677889999999999999999999999999999999999999999999999999999877531 1237899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI  154 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~  154 (211)
                      +.|++.|++.+...+..+.++.++.++++|.+.++ ....+.+|..+++.++..+.
T Consensus       122 ~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999877777777788 77889999999998876543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.78  E-value=2.6e-18  Score=138.43  Aligned_cols=139  Identities=14%  Similarity=0.090  Sum_probs=125.0

Q ss_pred             ccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615          19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM   98 (211)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~   98 (211)
                      ...+...+..|.+.+++|.|..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++...+.+.  ++++.+
T Consensus        20 ~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~--~~~~~l   97 (381)
T PRK03633         20 LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLM--VGFWSW   97 (381)
T ss_pred             HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence            445556677778888999999999999999999999999999999999999999999999999998888777  889999


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW  159 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw  159 (211)
                      ++.|++.|++.+...+.....+.+..++++|+++++ .....++|..++|.+++.+.+...|
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  159 (381)
T PRK03633         98 LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMS  159 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            999999999999888888888889999999999999 7899999999999999988775433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.76  E-value=2.7e-18  Score=139.87  Aligned_cols=164  Identities=16%  Similarity=0.052  Sum_probs=135.3

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhcccHHH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAYWDYKA   97 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~~~~~~   97 (211)
                      .....+..|.+.++++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++......   ...++++.
T Consensus        33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T PRK10489         33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLA  112 (417)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHH
Confidence            344445566667788889999999999999999999999999999999999999988877776654432   12356888


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      +++.|++.|++.+...+...+++.++.|+++|+++.+ .....++|..+||.+++.+.+..+|++.|++.++..++..+.
T Consensus       113 l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T PRK10489        113 IYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP  192 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            8899999999988888889999999999999999999 778999999999999999998889999998877766655444


Q ss_pred             HHhhhcCCC
Q psy3615         177 WMIVVYDTP  185 (211)
Q Consensus       177 ~~~~~~~~~  185 (211)
                      . +..|+.+
T Consensus       193 ~-~~l~~~~  200 (417)
T PRK10489        193 L-LRLPALP  200 (417)
T ss_pred             H-HhCCCCC
Confidence            3 3355543

>PTZ00207 hypothetical protein; Provisional

Probab=99.76  E-value=1e-17  Score=140.13  Aligned_cols=157  Identities=11%  Similarity=0.004  Sum_probs=129.4

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc----ccHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY----WDYKAMAG  100 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~  100 (211)
                      +...+.+++++|+|..+.+++.++. .....++++.|++.||+|+|+++.++.++++++.++++++..    ++++.+.+
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l  125 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSV  125 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            3455678999999999999988774 344567778999999999999999999999999998887522    47899999


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhh-hhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVAL-SYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~-~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      .|++.|++.+...+.....+.+++| ++||++.+ ......+|..+ +++..+++.  .+|+..|++.+.+.++..++.+
T Consensus       126 ~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        126 YNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988999999999997 67999999 77888999875 555555444  3688889998888888877777


Q ss_pred             hhhcCCC
Q psy3615         179 IVVYDTP  185 (211)
Q Consensus       179 ~~~~~~~  185 (211)
                      .+.+++|
T Consensus       203 ~~vr~p~  209 (591)
T PTZ00207        203 VFMRLPP  209 (591)
T ss_pred             hheeCCc
Confidence            7666554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.74  E-value=1.6e-17  Score=114.59  Aligned_cols=136  Identities=23%  Similarity=0.333  Sum_probs=119.0

Q ss_pred             HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615          46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP  125 (211)
Q Consensus        46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~  125 (211)
                      .+.+.++..++.++.|++.||+|||+.+..+.....++.+.....  ++++.+.+.+++.|++.+...+....++.|.+|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   81 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--SNITVLIIARFLQGFGAAFALVAGAALIADIYP   81 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence            345667888999999999999999999999998888888877666  788889999999999999999999999999999


Q ss_pred             CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      +++|++.++ ......+|..+++.+.+.+.+..+|++.+++.+...++..+...+..||
T Consensus        82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999 7899999999999999999998999999998887777766665554443

>KOG0254|consensus

Probab=99.74  E-value=2.9e-17  Score=137.23  Aligned_cols=143  Identities=16%  Similarity=0.176  Sum_probs=127.7

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV  120 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  120 (211)
                      +.+++.++..++..+++++.|+++|++|||+.++++.+.+.++.+++.++  +|+.+++++|++.|+|.|......+.++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a--~~~~~l~~GR~l~G~g~G~~~~~~piy~  167 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA--PSWYQLIVGRILTGLGVGGASVLAPVYI  167 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHhccchhhhhhcchhhH
Confidence            45899999999999999999999999999999999999999999999998  8999999999999999999999999999


Q ss_pred             hhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc--cCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615         121 AHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT--LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       121 ~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      +|..|++.||...+ .+....+|..++..++ ...++  .+||..+.+..+.+++..+. .++.||+|+.
T Consensus       168 sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~-~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~  235 (513)
T KOG0254|consen  168 SEIAPAHIRGTLVSLYQLFITIGILLGYCIN-YGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW  235 (513)
T ss_pred             hhcCChhhhHHHHHHHHHHHHHHHHHHHHHh-hhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence            99999999999999 7788889998885544 44443  48998888888888777777 6778888874

>TIGR00901 2A0125 AmpG-related permease

Probab=99.74  E-value=4.2e-17  Score=130.18  Aligned_cols=160  Identities=13%  Similarity=0.016  Sum_probs=125.1

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-----CCcchh-HHHHHHHHHHHHHhhhhh-cccH
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-----GTKVVF-GVSNLAMFLISFALPAAA-YWDY   95 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----G~r~~~-~~~~~~~~i~~~~~~~~~-~~~~   95 (211)
                      ...+..|.+.+++|+|.++.++..+. .+...+ .+++|++.||+     ||||.+ +.+.+..++......+.. ..+.
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l   83 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL   83 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence            34455666788999999999999755 444444 89999999998     898874 566666666655554441 1345


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC--------chHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG--------WEAAFYVT  166 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g--------w~~~~~~~  166 (211)
                      +.+....++.+++.+...+...+++.|++|+++|+++.+ ...+..+|..+++.+++.+.+..+        ||..|++.
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~  163 (356)
T TIGR00901        84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT  163 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence            666777778888888888999999999999999999999 779999999999999999988888        99999998


Q ss_pred             HHHHHHHHHHHHhhhcCC
Q psy3615         167 GALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~  184 (211)
                      ++..++..+..++..||+
T Consensus       164 ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       164 ALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHhccCC
Confidence            887776555544445554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.74  E-value=3.3e-17  Score=132.65  Aligned_cols=158  Identities=13%  Similarity=0.052  Sum_probs=117.8

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhH-HHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFG-VSNLAMFLISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      ..++++++++|+|+.+.|++.+...+ +..++.+.+++ .||+|+||.++ .+.+..+++..+..+.  ++++.+++.+.
T Consensus        37 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~  113 (393)
T PRK15011         37 TLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN--RNYFVLLFVGV  113 (393)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHH
Confidence            34556789999999999999876655 55555555555 99999998754 5555555666666666  77887766665


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchh--hHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERS--QFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~--~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      +.+...+...+....+..++.++++|.  ...+ .....++|..++|++++.+.++.|||..|++.+...++..+..++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~  193 (393)
T PRK15011        114 FLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLF  193 (393)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhh
Confidence            555545567788888888887766553  3446 5688899999999999999998999999999888877776666666


Q ss_pred             hcCCCC
Q psy3615         181 VYDTPD  186 (211)
Q Consensus       181 ~~~~~~  186 (211)
                      .||.++
T Consensus       194 ~~~~~~  199 (393)
T PRK15011        194 LPSMRK  199 (393)
T ss_pred             cCccCC
Confidence            676543

>KOG2615|consensus

Probab=99.74  E-value=3.3e-17  Score=127.48  Aligned_cols=115  Identities=15%  Similarity=0.173  Sum_probs=105.2

Q ss_pred             CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615          38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH  117 (211)
Q Consensus        38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  117 (211)
                      +..-.|.+-+.+.+.++++++.+|.++||+|||++++.++...++...+.+.+  .|+..+++.|++.|+..|- .....
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S--~~F~afv~aR~l~Gi~kgn-l~v~r  142 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS--RNFAAFVLARFLGGIFKGN-LSVIR  142 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhccCc-hHHHH
Confidence            44567899999999999999999999999999999999999999988888777  8897777889999999884 46678


Q ss_pred             HHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615         118 HLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID  155 (211)
Q Consensus       118 ~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~  155 (211)
                      ++++|..++++|+.+++ +...+++|..+||.+++++.+
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            99999999999999999 999999999999999999987

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.72  E-value=9.3e-18  Score=134.80  Aligned_cols=158  Identities=17%  Similarity=0.165  Sum_probs=123.4

Q ss_pred             ccccccccccccccCCCccccc--CCchhhHHHHHH-----HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh
Q psy3615          15 PISLSSRGVLFQQDGDSGSLFH--WDSNVQNLVLGS-----FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL   87 (211)
Q Consensus        15 ~~~~~~~~~~~~~~~~i~~~~~--~s~~~~~~~~~~-----~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~   87 (211)
                      .+++.|+..+.+..+.+.+++.  .++.+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3456677777766666666654  344555554443     233345688999999999999999999999999999888


Q ss_pred             hhhhcccHH--------HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh----
Q psy3615          88 PAAAYWDYK--------AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI----  154 (211)
Q Consensus        88 ~~~~~~~~~--------~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~----  154 (211)
                      .+.  ++++        .+++.|+++|++.+...+....++.|++++++|++..+ ...+..+|..+++.+...+.    
T Consensus        83 ~~~--~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        83 GLL--PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             hhC--CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            877  5553        47889999999999999999999999999999999999 77888999999988776553    


Q ss_pred             ----cccCchHHHHHHHHHHHHHH
Q psy3615         155 ----DTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus       155 ----~~~gw~~~~~~~~~~~~~~~  174 (211)
                          +..+||+.|++.+.+.++..
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHH
Confidence                35689999988766655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.71  E-value=5.8e-17  Score=134.93  Aligned_cols=148  Identities=16%  Similarity=0.077  Sum_probs=123.2

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      .....++++++|++..+.+++.+.+........+++|+++|| +|||+++.++.++.+++..++.+.. ++.+.+.+.++
T Consensus        42 ~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-~~~~~l~~~~~  120 (500)
T PRK09584         42 GIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-HDAGIVYMGMA  120 (500)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence            345566778999999999888888776666777899999999 5999999999999999988877651 24566778899


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCc--hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTE--RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~  173 (211)
                      +.|++.|...+...+++.+++|+++  |..+.+ .+.+.++|..++|.+++++.++.|||+.|++.++...+.
T Consensus       121 l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        121 TIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT  193 (500)
T ss_pred             HHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence            9999999988999999999998653  455777 789999999999999999999999999999877544443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.71  E-value=7e-17  Score=132.98  Aligned_cols=151  Identities=18%  Similarity=0.191  Sum_probs=121.3

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      ..++.++.+++|+++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++.+++.+++.... .+...+.+...
T Consensus        30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~-~~~~~~~l~l~  108 (493)
T PRK15462         30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE-IHPSFLYLSLA  108 (493)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHH
Confidence            3455566778999999999999999999999999999999999 999999999999999877665431 12233444444


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      +..++.|...+...++++|.+|++  +|.++.+ .+...++|..++|.+.+++.+..||++.|.+.++..++..+.
T Consensus       109 li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        109 IIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             HHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHH
Confidence            555666777788889999999875  6999999 888899999999999999999999999999876544443333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.69  E-value=3.9e-16  Score=130.22  Aligned_cols=150  Identities=13%  Similarity=0.064  Sum_probs=124.1

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      .+.+..++| +.+...|+.+...++..++.++.|+++|.||||++++.+.++..++.+.++-+  +|...++++..+.|+
T Consensus        67 l~~I~~diG-~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA--~~~~~~iag~~l~Gv  143 (599)
T PF06609_consen   67 LPYINADIG-GSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA--QNMNTFIAGMVLYGV  143 (599)
T ss_pred             HHHHHHhcC-CCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC--CcHHHHHHHHHHHHH
Confidence            345677787 44678899999999999999999999999999999999999999999999877  999999999999999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      |.|.... ....++|..|.+.|+.... .....-.....++.++..+..+.+|||.|++..+...+.+++..++.
T Consensus       144 gaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY  217 (599)
T PF06609_consen  144 GAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFY  217 (599)
T ss_pred             hhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            9877654 4566899999999988777 55555555567888887777778999999999888777665544433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.68  E-value=2.8e-16  Score=126.71  Aligned_cols=146  Identities=12%  Similarity=0.020  Sum_probs=113.4

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc----chhHHHHHHHHHHHHHhhhhhcccHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK----VVFGVSNLAMFLISFALPAAAYWDYKA   97 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r----~~~~~~~~~~~i~~~~~~~~~~~~~~~   97 (211)
                      ++..+..|.+.+++|.|..+.|++.+.+.++..+++++.|++.||+|||    +.+.+...+..  .......  ++++.
T Consensus        21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~   96 (382)
T PRK11128         21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFA--VAFWFGA--HSFWL   96 (382)
T ss_pred             HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHH--HHHHHhc--ccHHH
Confidence            3444555556688999999999999999999999999999999999984    33322222221  1122223  67899


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~  173 (211)
                      +++.|++.|++.+...+...++..++  +++|+++.+ .....++|..++|++++++.+++|||..|++.+...++.
T Consensus        97 l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128         97 LFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM  171 (382)
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            99999999999888888888887776  356888888 777789999999999999999999999998877654443

>KOG0569|consensus

Probab=99.68  E-value=1.6e-15  Score=123.62  Aligned_cols=145  Identities=17%  Similarity=0.187  Sum_probs=120.0

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-YWDYKAMAGLRIVQGVIGGLAWPSMHHLV  120 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  120 (211)
                      .+.+.+++.+|.++++.+.++++||+|||..+.+..++..++.++..++. .+++.+++++|++.|+..|......+.++
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl  141 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYL  141 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46677899999999999999999999999999999888888777665542 25688999999999999999999999999


Q ss_pred             hhccCCCchhhHhh-hhhcchhhhhhhhhhhh--hhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615         121 AHWIPPTERSQFIT-SYLGSSFGVALSYPLCG--VVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       121 ~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~--~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      .|..|++.||.... ...+..+|..++..++.  .+-+...|++.+....+..++..++. .+.||+|+.
T Consensus       142 ~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l-~~~PESPk~  210 (485)
T KOG0569|consen  142 TEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALL-PFLPESPKY  210 (485)
T ss_pred             hhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCCcch
Confidence            99999999999888 66888888888866653  23344569998888877777766555 458999974

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.67  E-value=1.1e-15  Score=127.26  Aligned_cols=161  Identities=12%  Similarity=0.096  Sum_probs=119.3

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHH-hhhhhcccHHHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFA-LPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~l  104 (211)
                      ..++.+++++|.+..+.++......++..++.+..|+++||+|||+++..+.+...+.... ......++...+++.+++
T Consensus       272 ~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (490)
T PRK10642        272 YMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLM  351 (490)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3445556778888888888888888999999999999999999999988877654443332 222222456777788888


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHhhhc
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMIVVY  182 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      .|++.+........++.+.+|++.|+++++ .+....+++.++|.+.+++.+..+ |+.+++.....+++..+.. ++.|
T Consensus       352 ~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~p  430 (490)
T PRK10642        352 LAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMK  430 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhc
Confidence            888777766777888889999999999999 675566667889999998887654 6766666555555555444 3468


Q ss_pred             CCCCC
Q psy3615         183 DTPDQ  187 (211)
Q Consensus       183 ~~~~~  187 (211)
                      |+|+.
T Consensus       431 es~~~  435 (490)
T PRK10642        431 ETANR  435 (490)
T ss_pred             cccCC
Confidence            87764

>TIGR00889 2A0110 nucleoside transporter

Probab=99.67  E-value=1.6e-15  Score=123.72  Aligned_cols=146  Identities=17%  Similarity=0.129  Sum_probs=123.5

Q ss_pred             hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHhhhhcchHHHH
Q psy3615          40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMAGLRIVQGVIGGLAWPSMH  117 (211)
Q Consensus        40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~  117 (211)
                      .+.+...++..++..++.++.|++.||+|+|+++.++.++.++...+.......  +.+.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566888899999999999999999999999999999999988876666553111  245667789999999998888989


Q ss_pred             HHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcc------cCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         118 HLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDT------LGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       118 ~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      .++.|.+|+++|+++++ .+ ....+|..+||+++|++.++      .||+..|.+.+++.++..++..++.+|+.
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999 75 67889999999999999987      46999999988888887777777777653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.67  E-value=5.9e-19  Score=145.06  Aligned_cols=146  Identities=20%  Similarity=0.197  Sum_probs=126.9

Q ss_pred             chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc---cHHHHHHHHHHHHhhhhcchHH
Q psy3615          39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW---DYKAMAGLRIVQGVIGGLAWPS  115 (211)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~  115 (211)
                      ..+.++..+...++..+++++.|.++||+|||+.+.++.++..++.++..++  +   +++.+.++|++.|++.|...+.
T Consensus        45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~R~~~G~~~g~~~~~  122 (451)
T PF00083_consen   45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFA--PSYNNFWMLLIGRFLIGFGIGGAYVV  122 (451)
T ss_pred             HHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccc
Confidence            3467899999999999999999999999999999999999999999999888  7   8999999999999999999999


Q ss_pred             HHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---CchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615         116 MHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---GWEAAFYVTGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       116 ~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      ...++.|..|+++|++..+ ......+|..++..+.....+..   +||..++...+..++..+.. .+.||+|+.
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pESP~w  197 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPESPRW  197 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccce
Confidence            9999999999999999999 77888999888887765554333   49999888877776654444 568999874

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.67  E-value=1.5e-15  Score=123.36  Aligned_cols=154  Identities=12%  Similarity=0.062  Sum_probs=123.3

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-----CCcc-hhHHHHHHHHHHHHHhhhhh-cccHHHHHHH
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-----GTKV-VFGVSNLAMFLISFALPAAA-YWDYKAMAGL  101 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----G~r~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~  101 (211)
                      |.+-++.|+|.+++|++......  .+.++++|+++||+     |||| .+.++....+++..+..+.. .++++.+.+.
T Consensus        23 ~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~  100 (402)
T PRK11902         23 QAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGL  100 (402)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            33445679999999999777665  69999999999999     8776 67777888877777665542 2346777777


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHh
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .++.++..+...+...+++.|++|+++|+++++ ...+..+|..+++.+...+.+. .|||..|++.+++.++..+.. +
T Consensus       101 ~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~  179 (402)
T PRK11902        101 AVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-L  179 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-H
Confidence            788888888899999999999999999999999 7788999999999999998885 599999999888776654443 3


Q ss_pred             hhcCCC
Q psy3615         180 VVYDTP  185 (211)
Q Consensus       180 ~~~~~~  185 (211)
                      ..||++
T Consensus       180 ~~~e~~  185 (402)
T PRK11902        180 WAPEPE  185 (402)
T ss_pred             hcCCCc
Confidence            455543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.66  E-value=1.4e-15  Score=123.27  Aligned_cols=156  Identities=8%  Similarity=0.002  Sum_probs=116.7

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hhh---cccHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AAA---YWDYKAMA   99 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~~---~~~~~~~~   99 (211)
                      ..+.++++++|+++.+.+++.+.+.++..+++++.|+++||+|||+.++.+....++......   +..   .+....+.
T Consensus        24 ~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (396)
T TIGR00882        24 FFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAI  103 (396)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            445556778999999999999999999999999999999999999999887766655433221   110   01233456


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.+++.|++.+...+....+..+..+  +++...+ .....++|..++|.+++.+.+ .+|+..|++.+.+.++..++.+
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       104 VGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             HHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHH
Confidence            67888888888888888777766532  3445667 667788999999999998766 5999999998888777665555


Q ss_pred             hhhcCC
Q psy3615         179 IVVYDT  184 (211)
Q Consensus       179 ~~~~~~  184 (211)
                      ...+|+
T Consensus       181 ~~~~~~  186 (396)
T TIGR00882       181 FAKPKA  186 (396)
T ss_pred             HhCCCC
Confidence            444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.66  E-value=7.6e-16  Score=124.23  Aligned_cols=144  Identities=10%  Similarity=0.004  Sum_probs=114.8

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchh----HHHHHHHHHHHHHhhhhhcccH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVF----GVSNLAMFLISFALPAAAYWDY   95 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~----~~~~~~~~i~~~~~~~~~~~~~   95 (211)
                      ..++..+..|.+.+++|+|..++|++.+.+.+...++++++|.++||+||++..    ..+..+..+  ......  +++
T Consensus        19 ~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~--~~~   94 (382)
T TIGR00902        19 AYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGA--HNA   94 (382)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhh--hhH
Confidence            344555556667788999999999999999999999999999999999985433    222222222  122234  779


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGAL  169 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~  169 (211)
                      +.+++.|++.|.+.+...|...++..++  +++|++..+ .....++|..++|++++.+.++.|||..|++....
T Consensus        95 ~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902        95 WLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9999999999998888888888887665  467899999 88899999999999999999999999999887655

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.65  E-value=4.9e-16  Score=140.80  Aligned_cols=157  Identities=11%  Similarity=0.062  Sum_probs=119.2

Q ss_pred             CCcccccCCc--hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHH
Q psy3615          30 DSGSLFHWDS--NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAGLRIVQG  106 (211)
Q Consensus        30 ~i~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~G  106 (211)
                      .+..+++.+.  ...+++.+++.++..++++++|+++||+|||++++++.++..+..++..+. ..++++.+++.|++.|
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  114 (1146)
T PRK08633         35 TLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLG  114 (1146)
T ss_pred             HHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            3444455543  346889999999999999999999999999999998887766555443322 1257899999999999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc--------c-CchHHHHHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT--------L-GWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~--------~-gw~~~~~~~~~~~~~~~~~  176 (211)
                      ++.+...+...+++.|++|+++|+++++ ...+..+|.++++.+++++.+.        . +|++.+.+..+...+..++
T Consensus       115 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (1146)
T PRK08633        115 AQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLI  194 (1146)
T ss_pred             HHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 7799999999999999998875        2 3444444433333333333


Q ss_pred             HHhhhcCCCC
Q psy3615         177 WMIVVYDTPD  186 (211)
Q Consensus       177 ~~~~~~~~~~  186 (211)
                      ..+..|+.+.
T Consensus       195 ~~~~~~~~~~  204 (1146)
T PRK08633        195 FAYRLPKVPA  204 (1146)
T ss_pred             HHhcCcCCCC
Confidence            3344565543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.65  E-value=2.4e-15  Score=136.40  Aligned_cols=151  Identities=10%  Similarity=0.060  Sum_probs=115.8

Q ss_pred             CcccccCCc-hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHH---HHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615          31 SGSLFHWDS-NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSN---LAMFLISFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        31 i~~~~~~s~-~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      +.++.+.+. ...++..+++.+.++++++++|+++||+|||+++....   +...+..+.....  ++++.+++.|+++|
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~--~s~~~l~~~~~l~g  119 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL--NSVPLLFAALFLMG  119 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence            334443333 34688888999999999999999999999999764322   2222222222223  68999999999999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  184 (211)
                      ++.+...|+..+++.+++++++|+++++ ..+..++|.++||++++++.+..+|++.|+......++..++ .+..++.
T Consensus       120 i~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  197 (1140)
T PRK06814        120 IHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLA-SLFIPKT  197 (1140)
T ss_pred             HHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH-HhhCCCC
Confidence            9999999999999999999999999999 889999999999999999999999999885444444443333 3445544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.64  E-value=6.9e-15  Score=119.14  Aligned_cols=141  Identities=18%  Similarity=0.124  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV  120 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  120 (211)
                      +.++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++....  ++.+.+++..++.|++.+..++......
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~~~  327 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--PSPWMALIGAALTGFGFSLVFPALGVEA  327 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45666778888899999999999999999999998888888877776665  6777778889999999998888888888


Q ss_pred             hhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         121 AHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       121 ~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      .|..|+++|+++.+ .+....+|..+++++.+.+.++.||+..|++.+.+.++..++..+..++
T Consensus       328 ~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        328 VKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            89999999999999 7788999999999999999999999999999888777766665554333

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.63  E-value=6.3e-15  Score=120.29  Aligned_cols=146  Identities=9%  Similarity=0.114  Sum_probs=125.1

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHH
Q psy3615          36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPS  115 (211)
Q Consensus        36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~  115 (211)
                      +.+..+.+.+.++..++..++.++.|++.||+|+|+.+..+.++.++..++..+.  ++.+.+++.+++.|++.+...+.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA--TGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence            5566678899999999999999999999999999999999999988888877776  78888888999999988888888


Q ss_pred             HHHHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         116 MHHLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       116 ~~~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      ...++.+.+|++.|++..+  .+....+|..+++++.|++.+..||+..|...+++.++..++.++..++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8899999999998888766  3467889999999999999999999999999888877766666554543

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.63  E-value=6.1e-15  Score=122.65  Aligned_cols=155  Identities=14%  Similarity=0.093  Sum_probs=122.4

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-----CCcch-hHHHHHHHHHHHHHhhhhh-cccHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-----GTKVV-FGVSNLAMFLISFALPAAA-YWDYKAMAG  100 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-----G~r~~-~~~~~~~~~i~~~~~~~~~-~~~~~~~~~  100 (211)
                      .|...++.|.|..+++.. +.....+ ++.+++|+++||+     |||+. +..+.+..+++..++++.. .++++.+.+
T Consensus        35 l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~  112 (491)
T PRK11010         35 LQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAA  112 (491)
T ss_pred             HHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence            344456678888888886 3333333 6889999999999     99986 5577666766666665531 246788888


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHHHHHHHHHHHHHHHH
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      .+++.+++.+...+...++..|++|+++|+++.+ ...+..+|..+++.+..++.+ ..|||..|++.+...++..+..+
T Consensus       113 ~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        113 LAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 779999999999999999988 57999999998887766655444


Q ss_pred             hhhcCCC
Q psy3615         179 IVVYDTP  185 (211)
Q Consensus       179 ~~~~~~~  185 (211)
                      + .||++
T Consensus       193 ~-~~e~~  198 (491)
T PRK11010        193 L-APEPT  198 (491)
T ss_pred             h-cCCCc
Confidence            3 56654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.62  E-value=3.2e-15  Score=121.84  Aligned_cols=156  Identities=13%  Similarity=0.012  Sum_probs=130.3

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      +...++.+|.++.+.+++.+...++..++.++.+++.||.++++.+..+.++.+++.++..+.  ++.+...+..++.|+
T Consensus       247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~  324 (417)
T PRK10489        247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLCLALFGY  324 (417)
T ss_pred             HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHH
Confidence            334455589999999999999999999999999999999888888888888777777666555  667777788888999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      +.+...+...+++.+..|++.|+++++ .+....+|..+++.+.+++.+..|++..++..+++.++..++.....++.+
T Consensus       325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        325 LSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            888777788889999999999999999 778889999999999999999999998888888777776666655555543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.62  E-value=4.9e-15  Score=122.58  Aligned_cols=154  Identities=8%  Similarity=-0.079  Sum_probs=115.2

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQ  105 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~  105 (211)
                      ..+.++++++|+|..+.++..+...++..++.+++|+++||+|+|+.+........+......+...++.....+.+++.
T Consensus       280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (467)
T PRK09556        280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFAL  359 (467)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34556778899999999999999999999999999999999999988776554444433222222224555666777888


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchh-hhhhhhhhhhhhhc------------ccCchHHHHHHHHHHH
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSF-GVALSYPLCGVVID------------TLGWEAAFYVTGALGV  171 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~-g~~~~~~~~~~l~~------------~~gw~~~~~~~~~~~~  171 (211)
                      |+..............|.+|+++||++.| .....++ |..++|.+.|++.+            ..+|+..|++..+..+
T Consensus       360 G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~  439 (467)
T PRK09556        360 GFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAI  439 (467)
T ss_pred             HHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHH
Confidence            86543333333466779999999999999 7777675 77999999999999            5789999998877777


Q ss_pred             HHHHHHHh
Q psy3615         172 VWWVVWMI  179 (211)
Q Consensus       172 ~~~~~~~~  179 (211)
                      +..+..++
T Consensus       440 ~~~~~~~~  447 (467)
T PRK09556        440 GCICLMAI  447 (467)
T ss_pred             HHHHHHHH
Confidence            66555443

>KOG2504|consensus

Probab=99.61  E-value=2.9e-15  Score=124.22  Aligned_cols=154  Identities=14%  Similarity=0.128  Sum_probs=139.0

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHH-HHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAG-LRIV  104 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~l  104 (211)
                      ...+.++++++-+.++.+|+.++......+..++.+.+.||+|.|.+.+.|.++.+++.++..++  ++.|.+++ ..++
T Consensus        67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~--~~i~~l~lt~gvi  144 (509)
T KOG2504|consen   67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA--TSLWQLYLTFGVI  144 (509)
T ss_pred             hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999998  88877665 5788


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY  182 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      .|+|.|..+.....++..+|+ ++|+.++| ...+..+|.++-|++..++.+..|||+.+++.+.+.+-.++......|
T Consensus       145 ~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  145 GGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            899999999999999999997 56999999 779999999999999999999999999999999888777666666565

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.61  E-value=1.1e-14  Score=125.36  Aligned_cols=140  Identities=16%  Similarity=0.078  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA  121 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  121 (211)
                      ......+..++.+++.++.|+++||+|||++++++.++.+++.++..+.  ++...+++.+++.|++.+..++....+++
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~--~s~~~ll~~~~l~g~~~~~~~~~~~a~~a  674 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG--NSESAMIALLCLFGGLSIAAWNALDVLTV  674 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667778999999999999999999999999999999998888777  66777788888889888888899999999


Q ss_pred             hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      |++|+++|++++| .+....+|.+++|.+++.+.+. +...+|++.+++.++..++.. .+||+.
T Consensus       675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~-~LPET~  737 (742)
T TIGR01299       675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL-KLPDTR  737 (742)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH-hCCCCc
Confidence            9999999999999 8899999999999999988764 456677777777666555554 357654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.61  E-value=2.3e-15  Score=122.91  Aligned_cols=159  Identities=9%  Similarity=-0.023  Sum_probs=107.5

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hhcc-----cHH
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AAYW-----DYK   96 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~~~-----~~~   96 (211)
                      ..+..+.++++++|+|+.+.|++.+.+.++..+++++.|+++||+|||++++++..+.++....... ...+     ...
T Consensus        29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (420)
T PRK09528         29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILL  108 (420)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566677889999999999999999999999999999999999999998876665544332111 1001     011


Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615          97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus        97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  175 (211)
                      ...+.++..|.+.....+....+..+ . .+++++.++ .....++|..++|++++.+.+ .+|+..|++.++..++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~  185 (420)
T PRK09528        109 GAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLV  185 (420)
T ss_pred             HHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHH
Confidence            12223333443333333333333322 2 235677788 778889999999999998877 4899999988877776665


Q ss_pred             HHHhhhcCC
Q psy3615         176 VWMIVVYDT  184 (211)
Q Consensus       176 ~~~~~~~~~  184 (211)
                      +.++..+|+
T Consensus       186 ~~~~~~~~~  194 (420)
T PRK09528        186 LLFFAKPDA  194 (420)
T ss_pred             HHhcccccc
Confidence            555544443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.61  E-value=7.5e-15  Score=115.41  Aligned_cols=157  Identities=15%  Similarity=0.068  Sum_probs=136.7

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hhcccHHHHHHH
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AAYWDYKAMAGL  101 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  101 (211)
                      ...++.|++++.++++..+.+.+...++.++.+.+++.|++.+|+|+|+.++.|+.++++++.++.- +...++..++++
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~  110 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVA  110 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            4456778899999999999999999999999999999999999999999999999999999888742 223678899999


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------------------cCchH
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------------------LGWEA  161 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------------------~gw~~  161 (211)
                      -++.|.|.+...+..+.++....++++..+.++ .+.++.+|..++|+++++++.+                   ..|++
T Consensus       111 lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~  190 (422)
T COG0738         111 LFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQF  190 (422)
T ss_pred             HHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999988888889 8899999999999999988772                   24778


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy3615         162 AFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~  179 (211)
                      +|...+....+..+....
T Consensus       191 pYl~~~~~lvll~v~~~~  208 (422)
T COG0738         191 PYLILAGLLVLLAVLILL  208 (422)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            888877776665554433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.60  E-value=8e-15  Score=117.11  Aligned_cols=143  Identities=13%  Similarity=0.066  Sum_probs=120.6

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g  110 (211)
                      +.+++|.++.+.+.+.+...++..+++++.|++.||+|||+.+.++..+.+++.++..+....+...+....++.|++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  310 (377)
T TIGR00890       231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG  310 (377)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence            34668888888999999999999999999999999999999999998888888776665522223334556778888888


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~  173 (211)
                      ...+....++.|.+|+++|++..+ .+....+|..++|.+.+.+.++.||++.|++.+++.++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            888888889999999999999999 778899999999999999999999999998887766554

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.60  E-value=1.2e-14  Score=117.61  Aligned_cols=150  Identities=15%  Similarity=0.173  Sum_probs=119.7

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      .+.++++++|+++.+.+++.+...++..++.++.|+++||+|+|+.+..+.....+........  ++.+.+++.+++.+
T Consensus       239 ~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~  316 (393)
T PRK15011        239 MPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA--HSPAILLGLQLLNA  316 (393)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHH
Confidence            3345567889999999998888888888899999999999999998887766655554444334  56777778888888


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ++.+...+....+..|.+|+ +|+++++ .+...++|..+++.+++.+.++.||+..|++...+.++..+..++
T Consensus       317 ~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        317 IYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            87777777777888898885 5999999 667789999999999999999999999998877777666555543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.59  E-value=5.9e-15  Score=122.79  Aligned_cols=146  Identities=17%  Similarity=0.071  Sum_probs=112.3

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      .+.++++++|.+..+.+++.+...++..++.++.|++.||+|+|+++..+..+..+..++.......+.+.+.+..++.+
T Consensus       298 lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (496)
T PRK03893        298 LPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQ  377 (496)
T ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            34455578999999999999999999999999999999999999998888776666554443332233344444445444


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV  172 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~  172 (211)
                      .......+....++.+.+|+++|++.++ .+....+|..++|.+.+.+.++.||+..+...+....+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        378 MLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             HHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            4333345667788999999999999999 77888999999999999999999999887665544333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.59  E-value=1.3e-14  Score=114.75  Aligned_cols=146  Identities=22%  Similarity=0.256  Sum_probs=132.3

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcc-hhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKV-VFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      ..+.+|.++.+.++..+...++..++.++.+++.||+|+|+ .+..+..+..++.+.....  ++.+...+..++.|++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~g~~~  279 (352)
T cd06174         202 LQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA--PSLALLLVALLLLGFGL  279 (352)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence            34445889999999999999999999999999999999999 9999999999988888776  67888889999999999


Q ss_pred             hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +...+....++.|..|+++|++.++ .....++|..+++.+.+.+.+..+|+..+++.+.+.++..++..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         280 GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999999999 78999999999999999999989999999998888877666543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.58  E-value=3.8e-14  Score=115.06  Aligned_cols=147  Identities=14%  Similarity=-0.022  Sum_probs=118.5

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g  110 (211)
                      +.++.|.++.+.+.+.+...++..++.++.|++.||+|+|+.+..+.+...++.+.....  ++.+.+.+..++.|++.+
T Consensus       246 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~  323 (406)
T PRK11551        246 LLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA--PSFAGMLLAGFAAGLFVV  323 (406)
T ss_pred             HHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHH
Confidence            445679999999999999999999999999999999999999888777666666655555  566777777888888887


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ...+...++..|.+|+++|++.++ .+....+|..++|.+.+.+.++.+ |...++......++..+..+.
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            788888999999999999999999 778899999999999999988754 555555555444444444433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.58  E-value=4.8e-14  Score=114.36  Aligned_cols=139  Identities=12%  Similarity=0.085  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA  121 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  121 (211)
                      .+.+.++..++..++.+..|++.||+|||+.+..+..+..++.+...+.  ++.+.+++.+++.|++.+...+...+.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--QTPLQLGILRFLLGAADGALLPAVQTLLV  337 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence            3555666778888899999999999999999999888877776666555  67788888999999999999999999999


Q ss_pred             hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615         122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY  182 (211)
Q Consensus       122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      +..|+++|++.++ ......+|..++|.+++.+.+..||++.|++.+++.++..++.++..+
T Consensus       338 ~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        338 YNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 778899999999999999999999999999998888877766655443

>PRK12382 putative transporter; Provisional

Probab=99.57  E-value=6.1e-14  Score=113.42  Aligned_cols=143  Identities=17%  Similarity=0.142  Sum_probs=121.3

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW  113 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  113 (211)
                      +.|.+  +.+.....+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.  ++.+.+++..++.|++.+...
T Consensus       245 ~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~  320 (392)
T PRK12382        245 SKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA--PTAWVALAGAALTGAGCSLIF  320 (392)
T ss_pred             hcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhHH
Confidence            34444  34566677788888999999999999999999999998888887776665  677777888999999998888


Q ss_pred             HHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         114 PSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       114 ~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      +.....+.+.+|+++|+++.+ .+....+|..++|.+.+++.++.||+..|.+.+.+.++..++.++.
T Consensus       321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        321 PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            888889999999999999999 7788999999999999999999999999999888877766665543

>KOG0253|consensus

Probab=99.57  E-value=1.2e-14  Score=113.16  Aligned_cols=159  Identities=14%  Similarity=0.169  Sum_probs=137.2

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (211)
                      +.+.|.+.+.++.+..+..++......++.+++..+|.++|++|||+......+..++...+....  +|+..+.+.|.+
T Consensus        98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~s--pnf~~L~~f~~l  175 (528)
T KOG0253|consen   98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGAS--PNFASLCVFRAL  175 (528)
T ss_pred             HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCC--CCeehhhHHHHH
Confidence            345566778888888899999999999999999999999999999999999999999988888777  999999999999


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  184 (211)
                      .|+|.|. .|...++-.|..|..+|...+-....+.+|.++...+.-....++||||.+........+ +...+++.||+
T Consensus       176 ~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~-~a~f~~w~~ES  253 (528)
T KOG0253|consen  176 WGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMF-AARFLVWVYES  253 (528)
T ss_pred             HhccCCC-ccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHH-HHHHHhhcccC
Confidence            9999998 888999999999999999888723889999999999998888899999988887744444 34445668898


Q ss_pred             CCC
Q psy3615         185 PDQ  187 (211)
Q Consensus       185 ~~~  187 (211)
                      |+.
T Consensus       254 pRf  256 (528)
T KOG0253|consen  254 PRF  256 (528)
T ss_pred             cch
Confidence            874

>TIGR00889 2A0110 nucleoside transporter

Probab=99.56  E-value=6.8e-14  Score=114.24  Aligned_cols=153  Identities=14%  Similarity=0.077  Sum_probs=110.7

Q ss_pred             cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615          24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFALPAAAYWDYKAMAGLR  102 (211)
Q Consensus        24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  102 (211)
                      ++++.+++++++|++..+.|++.+.+.++..++++++|.++||+|+ |+++.++.++.++...+..+.  ++++.+.+.+
T Consensus        22 ~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   99 (418)
T TIGR00889        22 LVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV--TTPAGMFPVL   99 (418)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence            3667778888999999999999999999999999999999999965 778888888887777777666  7889999999


Q ss_pred             HHHHhhhhcchHHHHHHhhhccC--------CCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIP--------PTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      ++.|++.+...+...++......        ...|.+.     ...+|..++|.+++.+.....|+ +|++.++..++..
T Consensus       100 ~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~-----~G~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~  173 (418)
T TIGR00889       100 LANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRV-----MGTIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG  173 (418)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeee-----ehhHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence            99999877766666555432221        1123332     23468888888888774332344 4556566555544


Q ss_pred             HHHHhhhcCCC
Q psy3615         175 VVWMIVVYDTP  185 (211)
Q Consensus       175 ~~~~~~~~~~~  185 (211)
                      ++ .+..||.|
T Consensus       174 ~~-~~~~~e~~  183 (418)
T TIGR00889       174 VF-ALTLPDIP  183 (418)
T ss_pred             HH-HhcCCCCC
Confidence            44 34566654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0252|consensus

Probab=99.56  E-value=1.6e-14  Score=115.06  Aligned_cols=150  Identities=18%  Similarity=0.192  Sum_probs=118.9

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc-----HHHHHHHHHHHHhhhh
Q psy3615          36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD-----YKAMAGLRIVQGVIGG  110 (211)
Q Consensus        36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~l~G~~~g  110 (211)
                      |+++...+.+..+..+|.+++|++.|++.||+|||+++...+++..++++++++...++     .+++.+.|+++|+|.|
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG  159 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG  159 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence            35566788999999999999999999999999999999999999999998776653222     5677889999999999


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc---------------cCchHHHHHHHHHHHHHH
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT---------------LGWEAAFYVTGALGVVWW  174 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~---------------~gw~~~~~~~~~~~~~~~  174 (211)
                      .-+|...++.+|...++.||...+ +...+.+|...|.+++-.+..-               .-||..+.+.++..+.+ 
T Consensus       160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~-  238 (538)
T KOG0252|consen  160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLV-  238 (538)
T ss_pred             CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHH-
Confidence            999999999999999999999999 8888888888777776544311               12887776654444433 


Q ss_pred             HHHHhhhcCCCC
Q psy3615         175 VVWMIVVYDTPD  186 (211)
Q Consensus       175 ~~~~~~~~~~~~  186 (211)
                      +...+.+||+++
T Consensus       239 ly~Rl~M~Et~~  250 (538)
T KOG0252|consen  239 LYFRLKMPETAR  250 (538)
T ss_pred             HHhhhcCCcchh
Confidence            333445677654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.55  E-value=1.3e-14  Score=118.72  Aligned_cols=164  Identities=15%  Similarity=0.073  Sum_probs=124.6

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcc-hhHHHHHHHHHHHHHhhhhhcc---
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKV-VFGVSNLAMFLISFALPAAAYW---   93 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~-~~~~~~~~~~i~~~~~~~~~~~---   93 (211)
                      ....++.+++.+++|+++.+.|.+.++..+..++..++.|+++||    +|||| .++.+....+++.+++......   
T Consensus        17 ~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~   96 (437)
T TIGR00792        17 IVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSAT   96 (437)
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcc
Confidence            334556777888999999999999999999999999999999998    67744 5667777888777766554211   


Q ss_pred             -cHHHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhh-------cccCchHHH
Q psy3615          94 -DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVI-------DTLGWEAAF  163 (211)
Q Consensus        94 -~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-------~~~gw~~~~  163 (211)
                       ....+.+.+++.+++.+...+...++..|.. ++++|++..+ ...+..+|..++..+.+.+.       +..+|++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~  176 (437)
T TIGR00792        97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFA  176 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHH
Confidence             1455667788888888887777788888887 4678999988 66777777766655554443       246899999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCC
Q psy3615         164 YVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      .+.+++.++..++.++..+|++
T Consensus       177 ~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       177 LVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHcCCEecC
Confidence            9988888777766666666654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.55  E-value=5.9e-14  Score=112.50  Aligned_cols=148  Identities=13%  Similarity=0.118  Sum_probs=120.8

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      +..+.+++|.++.+.+++.+...+...++.++.|++.||+|+|+++.++.+...+........  ++.+.+++.+++.|+
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~  300 (375)
T TIGR00899       223 PLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNAI  300 (375)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            334567789999999998888877788889999999999999999988777666555444444  567777788889999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.+...+....+..|..|+ +++++++ .+...++|..++|.+.+.+.+..||+..|++.+++.++..++..
T Consensus       301 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       301 FIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            8888888888888998875 5678889 77888899999999999999999999999988877766655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.55  E-value=7.5e-14  Score=112.87  Aligned_cols=151  Identities=17%  Similarity=0.037  Sum_probs=120.9

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh-hhhhcccHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL-PAAAYWDYKAMAGLRIVQ  105 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~l~  105 (211)
                      .++.+.+++|.+..+.+++.+...++..+++++.|++.||+++|+. ..+..+..++.... ...  ++.+.+++..++.
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~  304 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAA--NSEWHLSVLSIFW  304 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHh--chHHHHHHHHHHH
Confidence            4455666789999999999999999999999999999999998765 44444444443332 233  5677778888899


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      |++.+...+.....+.+..| ++|+++++ ......+|..+||.++|.+.++.|++..|+..+.+.++..+......
T Consensus       305 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        305 GIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99887777777888888876 68999999 77888999999999999999999999999999888877766665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.54  E-value=3.2e-14  Score=117.02  Aligned_cols=157  Identities=13%  Similarity=0.052  Sum_probs=119.7

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhcc------cHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAYW------DYKAM   98 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~~------~~~~~   98 (211)
                      .+.+.+++|.+..+.++......++..++.++.|++.||+|||+.+.++.++.+++.++..+   ...+      +...+
T Consensus       307 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (481)
T TIGR00879       307 SPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI  386 (481)
T ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence            34556778888888889999999999999999999999999999999988887777666552   1111      22222


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      ....+..+.......+....++.|.+|+++|+++++ .+...++|..++|.+.+.+.++.+|++.|++.+.++++..++.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~  466 (481)
T TIGR00879       387 VFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFV  466 (481)
T ss_pred             HHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHH
Confidence            222222222222234666777899999999999999 8899999999999999999998899999999888888877776


Q ss_pred             HhhhcCC
Q psy3615         178 MIVVYDT  184 (211)
Q Consensus       178 ~~~~~~~  184 (211)
                      .+..||.
T Consensus       467 ~~~~~~~  473 (481)
T TIGR00879       467 YFFLPET  473 (481)
T ss_pred             heecccC
Confidence            6656654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03699 putative transporter; Provisional

Probab=99.53  E-value=6.6e-14  Score=113.39  Aligned_cols=151  Identities=10%  Similarity=0.111  Sum_probs=122.4

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (211)
                      ...++++++++|+|..+.+.+.+.+.++..++.++.|++.||+++|+.+.....+..+...+....  ++.+.+.+..++
T Consensus       226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  303 (394)
T PRK03699        226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNT--DDPSHLLYAILG  303 (394)
T ss_pred             HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHH
Confidence            345556667889999999999999999999999999999999999999988777766665555444  566666677788


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      .|++.+..++...+...+..| +++++..+ ......+|..++|.+.+++.+..|++..+++.+++.++..+...
T Consensus       304 ~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        304 LGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence            898888788887888888776 44677788 77788899999999999999999999999988877766655433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.52  E-value=1.7e-14  Score=118.96  Aligned_cols=142  Identities=17%  Similarity=0.146  Sum_probs=115.2

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhHHH--HHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFGVS--NLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      .+++|++..+.+++.++..++..+++++.|++.||.  ++|+...++  ....++..+++...  ++++.+++.+++.|+
T Consensus       268 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~~~i~~~~~G~  345 (455)
T TIGR00892       268 AKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--GDYTGLVIYCIFFGL  345 (455)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999974  344433333  33333444444444  678888889999999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc-CchHHHHHHHHHHHHHHH
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL-GWEAAFYVTGALGVVWWV  175 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~-gw~~~~~~~~~~~~~~~~  175 (211)
                      +.+...+...+++.|.+|++++++.++ .+...++|..++|.+++.+.+.. +|++.|++.+++.++..+
T Consensus       346 ~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       346 SFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            999999999999999999999999999 87889999999999999999877 499999988877665544

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.51  E-value=9.9e-14  Score=115.58  Aligned_cols=147  Identities=13%  Similarity=0.124  Sum_probs=123.5

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh---hcccHHHHHHHHHHHH
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA---AYWDYKAMAGLRIVQG  106 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~G  106 (211)
                      .+..+..-|+...+.+.+...+-.++.++++|.++||++||++++.+-++.++......+.   ...+.+.+++..++.|
T Consensus        35 wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g  114 (524)
T PF05977_consen   35 WLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLG  114 (524)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            3344555578889999999999999999999999999999999999988876654443322   2236788899999999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      ++.+...|+.++++.+..|+++..++++ .....++...+||.++|.+....|-.+.|.+.++..++..+.
T Consensus       115 ~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  115 IGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA  185 (524)
T ss_pred             HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 778899999999999999999888888898877665554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.51  E-value=3.3e-13  Score=108.88  Aligned_cols=142  Identities=15%  Similarity=0.140  Sum_probs=115.6

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g  110 (211)
                      +.++.|.++.+.+...+...++..+++++.|++.||+|+|+++..+..+.+++.....    + ........++.|++..
T Consensus       226 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~l~g~~~~  300 (381)
T PRK03633        226 YLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML----S-QAAMAPALFILGAAGF  300 (381)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHHH
Confidence            3455788988999999999999999999999999999999999888877777655432    1 1233456677787777


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      ...|.....+.|..|+++++...+ .....++|..++|.++|++.++.+|++.|.+.+.+.++..+..
T Consensus       301 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        301 TLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             hHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            778999999999999888887777 6688899999999999999999999999998877776654444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.50  E-value=1.1e-13  Score=114.62  Aligned_cols=156  Identities=12%  Similarity=0.028  Sum_probs=113.9

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc-HH-HHHHHHHHHH
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD-YK-AMAGLRIVQG  106 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~-~~-~~~~~~~l~G  106 (211)
                      |.+.++.|.+.....+......+...++.++.+++.||+|||++++.+..+.+++.+++.....++ .+ ......++.+
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  374 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            445567788877777777778888999999999999999999999999999888877665432112 11 2223334444


Q ss_pred             hhhhc-chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhh------hhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         107 VIGGL-AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG------VVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       107 ~~~g~-~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~------~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      .+.+. ..+....+++|.+|+++|+++++ .+....+|..+++.+.+      ++.+..+|++.|++.+.++++..++.+
T Consensus       375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence            44443 33677899999999999999999 77888888877755544      444678899899988877777766665


Q ss_pred             hhhcCC
Q psy3615         179 IVVYDT  184 (211)
Q Consensus       179 ~~~~~~  184 (211)
                      ++.||+
T Consensus       455 ~~~~e~  460 (479)
T PRK10077        455 KFVPET  460 (479)
T ss_pred             hccccC
Confidence            556654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.49  E-value=1.6e-13  Score=110.23  Aligned_cols=144  Identities=18%  Similarity=0.182  Sum_probs=112.8

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHH-H-HhhhhhcccHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLIS-F-ALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~-~-~~~~~~~~~~~~~~~~~~l  104 (211)
                      .+..+++++|.++.+.+...+...++..++.++.|++.||+|||+.+.....+..+.. . ...+...++.+.+....++
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (394)
T TIGR00883       242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLG  321 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3444557788999999999999999999999999999999999998775555444333 1 2222212456666777888


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHH
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALG  170 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~  170 (211)
                      .|++.+...+...+++.|.+|+++|+++.+ .+ ....+|..++|.+++++.++.| |+..++...+..
T Consensus       322 ~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       322 LALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            898888888999999999999999999999 55 5567888899999999999888 887766655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.48  E-value=4.3e-13  Score=110.02  Aligned_cols=154  Identities=14%  Similarity=0.010  Sum_probs=106.2

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchh-HHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVF-GVSNLAMFLISFALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (211)
                      ++.+.+++|++..+.+...+.+.++..++.++.|+++||+  ++|+.. ....+...+...........+.....+..+.
T Consensus       267 p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (434)
T PRK11663        267 NLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFT  346 (434)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            3445577899999999999999999999999999999999  333332 2211111111111111111233333344444


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      .|++.............|.+|+++|+++++ .+....+|..++|++.+++.++.||+..|+..+++.++..+..+...
T Consensus       347 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        347 IGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            554332222333456789999999999999 88999999999999999999999999999998888777766555444

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.48  E-value=1.5e-13  Score=111.09  Aligned_cols=138  Identities=14%  Similarity=0.059  Sum_probs=111.7

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      .++.+.+++|++..+.+++.+...++..++.++.|++.||+|||+.+..+..+.++........ .++.+.+.+..++.|
T Consensus       261 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  339 (405)
T TIGR00891       261 LPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAI-GANVAVLGLGLFFQQ  339 (405)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHH
Confidence            4445567789999999999999999999999999999999999999988877654433322111 245566666667777


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYV  165 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~  165 (211)
                      +..+...+....++.|.+|+++|+++++ .+....+|..++|++.+.+.++.| |+..+..
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            7777777788889999999999999999 778889999999999999999988 8766654

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.47  E-value=3.2e-13  Score=109.06  Aligned_cols=147  Identities=19%  Similarity=0.259  Sum_probs=127.8

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      +.+|+|+++..-+.+.|..-.-+...++||++||+ |+|+++..|.++..++.++.+.....+...++++-.+.++|.|.
T Consensus        54 ~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl  133 (498)
T COG3104          54 DGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGL  133 (498)
T ss_pred             ccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccc
Confidence            33669999998888888888889999999999995 99999999999999999988776212577888888888899999


Q ss_pred             chHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         112 AWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .-+...+++.|.+|++  +|....+ .|++.++|+.++|.+.+++.++.||+..|...+.-....++..++
T Consensus       134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~  204 (498)
T COG3104         134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL  204 (498)
T ss_pred             ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875  5777788 889999999999999999999999999999988777776665554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.47  E-value=3.4e-13  Score=111.23  Aligned_cols=154  Identities=10%  Similarity=0.064  Sum_probs=105.2

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhH-HHHHHHHHHHHHhhhhhcccHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFG-VSNLAMFLISFALPAAAYWDYKAMAGLR  102 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~  102 (211)
                      ..+.+++++.|++..+.++....+.++..++.++.|+++||+  +||+... ....+..++.+...+....+.+..++..
T Consensus       275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  354 (452)
T PRK11273        275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACM  354 (452)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence            345556677889988999999999999999999999999999  4554332 2222233333222222113344444455


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVA-LSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~-~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ++.|.+..........+..|.+|+++||++.+ .+....+|.. .+|.+.+.+.++.||+..|++.+..+++..+....
T Consensus       355 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        355 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            55555433223333456779999999999999 7666677755 57999999999999999999888877776555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.47  E-value=4e-13  Score=108.88  Aligned_cols=155  Identities=10%  Similarity=-0.036  Sum_probs=118.0

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      .++.++ ++|.+..+.+...+.+.++..++++..|++.||+|+|+.+..+..+..++..+..... ++....  .-++.|
T Consensus       228 lp~~l~-~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~--~~~l~g  303 (393)
T PRK09705        228 LPAFYI-EIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP-LQLPVL--WAMVCG  303 (393)
T ss_pred             HHHHHH-HcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc-chHHHH--HHHHHH
Confidence            444444 5799999999999999999999999999999999999999888877777665543331 222222  234568


Q ss_pred             hhhhcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         107 VIGGLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      ++.+...+.......+..+ +++|++..+ .+....++..++|.+.+++.+..| |...|++....+++..+......||
T Consensus       304 ~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (393)
T PRK09705        304 LGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPA  383 (393)
T ss_pred             HhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888777877777777775 578999999 888889999999999999999876 7777777776666665555555555


Q ss_pred             CC
Q psy3615         184 TP  185 (211)
Q Consensus       184 ~~  185 (211)
                      ++
T Consensus       384 ~~  385 (393)
T PRK09705        384 RF  385 (393)
T ss_pred             cc
Confidence            43

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.47  E-value=1.1e-12  Score=105.88  Aligned_cols=144  Identities=13%  Similarity=0.035  Sum_probs=125.8

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      ++.+ +++|.++.+.|...+...++..+..++.+++.||+|+|+.+.++.+..++...+..+.  ++.+.+++.+++.|+
T Consensus       229 ~~~l-~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~q~l~g~  305 (382)
T TIGR00902       229 AIYW-QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAI--EAFPLIFLLQILHCG  305 (382)
T ss_pred             HHHH-HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhH--hhHHHHHHHHHHHHH
Confidence            3344 5689999999999999999999999999999999999999999999999998888777  888999999999999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      ..+...+....++.+. |+++|++..+ .+ ....+|..+++.++|++.++.|+ ..|+..+.+.++..++
T Consensus       306 ~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       306 TFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            9999999999999998 8889999899 54 56789999999999999999986 6677777777655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09952 shikimate transporter; Provisional

Probab=99.47  E-value=1e-12  Score=107.99  Aligned_cols=156  Identities=12%  Similarity=-0.009  Sum_probs=112.4

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh--hcccHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA--AYWDYKAMAGLRIV  104 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l  104 (211)
                      .++++++++|.+......+.....+...++.++.|+++||+|||+++..+.++..++...+...  ..++.+.+++..++
T Consensus       273 ~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  352 (438)
T PRK09952        273 ALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML  352 (438)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3445567788887766666666677778888999999999999999988876655544333221  11234444455666


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhccc--CchHHHHHHHHHHHHHHHHHHhh
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTL--GWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~--gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      .+++.+...+....++.|.+|++.|+++.+ .+ .+..+|+.++|.+.+++.+..  +|+..+...+...++..+..+. 
T Consensus       353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-  431 (438)
T PRK09952        353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-  431 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-
Confidence            788888778888999999999999999999 66 445589999999999998754  4887777776666665555443 


Q ss_pred             hcC
Q psy3615         181 VYD  183 (211)
Q Consensus       181 ~~~  183 (211)
                      .+|
T Consensus       432 ~~~  434 (438)
T PRK09952        432 MKD  434 (438)
T ss_pred             ccc
Confidence            444

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.45  E-value=8.5e-13  Score=105.83  Aligned_cols=150  Identities=13%  Similarity=-0.033  Sum_probs=108.1

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH-HHHHHHHHH----HH-HhhhhhcccHHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG-VSNLAMFLI----SF-ALPAAAYWDYKAMAGL  101 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~i~----~~-~~~~~~~~~~~~~~~~  101 (211)
                      +..+++++|.++.+.+++.+...++..++.++.|++.||+++|+... .......++    .+ .......++.+..+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (399)
T TIGR00893       239 PTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALAL  318 (399)
T ss_pred             HHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            44456778989999999999999999999999999999999996211 111111111    11 1111111233333333


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHH
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~  178 (211)
                      ..+.+.+.+ ..+...+++.|.+|+++|+++++ ......+|..++|.+.+.+.+..| |+..|++.+.+.++..+..+
T Consensus       319 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       319 VALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            444444444 78889999999999999999999 778889999999999999999988 99999888877766655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.45  E-value=1e-12  Score=107.87  Aligned_cols=134  Identities=14%  Similarity=0.107  Sum_probs=98.1

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHH-h-hhhhcccHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFA-L-PAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~-~-~~~~~~~~~~~~~~~~l  104 (211)
                      .+.++++.+|++..+.++....+.++..++.++.|+++||+|||+++..+..+..+.... . .....++........++
T Consensus       261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (434)
T PRK15075        261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW  340 (434)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            444455668999889898888899999999999999999999999888765544332211 1 11112334444444566


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhh-cchhhhhhhhhhhhhhhcccCch
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYL-GSSFGVALSYPLCGVVIDTLGWE  160 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~-~~~~g~~~~~~~~~~l~~~~gw~  160 (211)
                      .+++.+...+....++.|.+|+++|+++.+ .+. +..++..++|.+.+++.++.|+.
T Consensus       341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            667777666777788999999999999999 554 44455778999999999988864

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.44  E-value=3.3e-12  Score=105.51  Aligned_cols=153  Identities=14%  Similarity=0.076  Sum_probs=128.6

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc--chhHHHHHHHHHHHHHhhh------hhcccHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK--VVFGVSNLAMFLISFALPA------AAYWDYKAM   98 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~i~~~~~~~------~~~~~~~~~   98 (211)
                      ...+.++++|++..+...+.....+..+++.+++|++.||+|.|  +++..++++..+..+...+      ...++.+.+
T Consensus       304 ~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f  383 (477)
T PF11700_consen  304 AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEF  383 (477)
T ss_pred             HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHH
Confidence            33445678999999999999999999999999999999999999  8888888877555444433      012577889


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVV  176 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~  176 (211)
                      .+..++.|+..|..++...++.++..|+++.+...| ..........+||.+.+.+.+..| .|..+....++.++..++
T Consensus       384 ~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l  463 (477)
T PF11700_consen  384 WVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL  463 (477)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999 668899999999999999999887 788888777776666665


Q ss_pred             HHh
Q psy3615         177 WMI  179 (211)
Q Consensus       177 ~~~  179 (211)
                      .++
T Consensus       464 l~~  466 (477)
T PF11700_consen  464 LFF  466 (477)
T ss_pred             Hhh
Confidence            543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.43  E-value=8.7e-13  Score=107.73  Aligned_cols=131  Identities=16%  Similarity=0.049  Sum_probs=97.4

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      .++.|.++.+.+.+.+...++..++.++.|++.||+|||+.+..+.++..+..+.......++...+....+..+.....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (426)
T PRK12307        258 LAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVG  337 (426)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhccc
Confidence            34568888889999999999999999999999999999999988887776655544333112222222222222222223


Q ss_pred             chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHH
Q psy3615         112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAA  162 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~  162 (211)
                      ..+..+.++.|.+|+++|++++| .+....+|..++|.+.+++.+..|+...
T Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence            34556678899999999999999 8888899999999999999998886543

>TIGR00897 2A0118 polyol permease family

Probab=99.43  E-value=2.8e-12  Score=104.22  Aligned_cols=148  Identities=14%  Similarity=0.136  Sum_probs=112.7

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH-HHHHHHHHHHHHhhhh---hcccHHHHHHHHHHH
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG-VSNLAMFLISFALPAA---AYWDYKAMAGLRIVQ  105 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~  105 (211)
                      .+.+++|.+..+.+++.+...++..++.+..|+++||+|||+.+. .+.+..++....+...   ..++.+..++..++.
T Consensus       247 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (402)
T TIGR00897       247 MFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL  326 (402)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            344678999999999999999999999999999999999988764 3333333333222221   113566667788888


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      |++.+...+ ....+.+..| ++|+++++ .+....+|..++|.+.+.+.+..||+..+++.+.+.++..++.++
T Consensus       327 G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       327 GIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            888776544 4456667654 68999999 889999999999999999999999999999988887776666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.43  E-value=1.1e-12  Score=109.14  Aligned_cols=154  Identities=12%  Similarity=0.091  Sum_probs=117.2

Q ss_pred             ccCCCcccccCCchhhHHHHH-HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hh-cccHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLG-SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AA-YWDYKAMAGLRI  103 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~-~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~  103 (211)
                      ..+.+.+++|++..+.+++.. ...++..++.+++|++.||+|+|+.+.++.++.++..+.... .. .++.+.+....+
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            445556678999999999874 556899999999999999999998877766655554332221 11 134444455566


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      +..++.|...+...++..+..+++.+++..+ .+....+|..+++++.|++.+..||+..|.+..++.++..++....
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            6565556666777888899999999999999 7788899999888999999999999999998888888776665543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.42  E-value=1.6e-12  Score=107.00  Aligned_cols=153  Identities=11%  Similarity=-0.006  Sum_probs=117.3

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH----HhCCcchhHHH-HHHHHHHHHHhhhhhcccH----------
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR----SLGTKVVFGVS-NLAMFLISFALPAAAYWDY----------   95 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~G~r~~~~~~-~~~~~i~~~~~~~~~~~~~----------   95 (211)
                      +.+++|.++.+.+++..+..+...+.+++.|+++|    |+|||+.++++ .....++..+++++  ++.          
T Consensus        30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~--~~~~~~~~~~~~~  107 (477)
T TIGR01301        30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA--ADIGHLFGDNLDK  107 (477)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC--chhhhhccccccc
Confidence            45789999999999999999999999999999999    59999998875 55555555565554  332          


Q ss_pred             -------HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCch--hhHhh-hhhcchhhhhhhhhhhhhh--hcc-------
Q psy3615          96 -------KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTER--SQFIT-SYLGSSFGVALSYPLCGVV--IDT-------  156 (211)
Q Consensus        96 -------~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r--~~~~~-~~~~~~~g~~~~~~~~~~l--~~~-------  156 (211)
                             +.+++.-.+..++.....+...++++|..|+++|  +.+.+ .....++|..+++.+++..  .+.       
T Consensus       108 ~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~  187 (477)
T TIGR01301       108 KTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTE  187 (477)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccc
Confidence                   2223333444557777888889999999998866  56777 6688899999999998764  221       


Q ss_pred             ------cCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         157 ------LGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       157 ------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                            .+.+..|++.+++.++..++..+..+|.+
T Consensus       188 ~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       188 ACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence                  15688999988888888888777777764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.42  E-value=1.5e-12  Score=108.54  Aligned_cols=147  Identities=17%  Similarity=0.108  Sum_probs=130.2

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      ..++++|.+...+|++.+.+.+|..++.++.+++.+|+++++.+..+.+..+++.+..++.  ++.+...+..++.|++.
T Consensus       244 ~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l~l~G~~~  321 (524)
T PF05977_consen  244 FARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIALFLAGAAW  321 (524)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHH
Confidence            3467789999999999999999999999999999999999999999999999988888777  88888888999999999


Q ss_pred             hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      ........+.+.+..|++.||+.++ ..+....+..+|..+.|.+.+..|.+..+.+.++..++..++..
T Consensus       322 ~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  322 IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            8888889999999999999999999 66888888999999999999999999888887766555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.40  E-value=3.1e-12  Score=105.08  Aligned_cols=159  Identities=11%  Similarity=0.024  Sum_probs=107.5

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH---HHHHhhhhhcccHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL---ISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      .+.++++..|.++.+.++....+.++..++.++.|++.||+++++....+.....+   +..........+.+......+
T Consensus       274 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (438)
T TIGR00712       274 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMI  353 (438)
T ss_pred             HHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            44555666789999999999999999999999999999999754433333322221   111111111123333333444


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhh-hhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFG-VALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g-~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      +.|++.............|.+|+++|++++| .+....+| ..++|.+.|.+.++.||...+++...+.++..+..++..
T Consensus       354 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       354 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             HHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            4554432222223356779999999999999 76666666 578999999999999999999988887777777766666


Q ss_pred             cCCC
Q psy3615         182 YDTP  185 (211)
Q Consensus       182 ~~~~  185 (211)
                      +|++
T Consensus       434 ~~~~  437 (438)
T TIGR00712       434 IGEK  437 (438)
T ss_pred             hhcc
Confidence            6643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=6.2e-12  Score=100.15  Aligned_cols=159  Identities=20%  Similarity=0.194  Sum_probs=131.7

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      ....++++.|.+++..|+|.+..+++...+.++..+++.++|++.|| +.|+.+.....+.++..+...+.. ++.+...
T Consensus       227 ~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-~~~~~~~  304 (394)
T COG2814         227 HFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-ASPALAL  304 (394)
T ss_pred             hhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-chHHHHH
Confidence            44556788899999999999999999999999999999999999999 999999988888877777665542 3455666


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.-++.|++............++ ..++.++.+.+ .....++|..+|..++|.+.++.|+....++.+.+.++..++..
T Consensus       305 ~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         305 ALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            66777888877666666667777 33577999999 66999999999999999999999999999999888888777665


Q ss_pred             hhh
Q psy3615         179 IVV  181 (211)
Q Consensus       179 ~~~  181 (211)
                      ...
T Consensus       384 ~~~  386 (394)
T COG2814         384 LSA  386 (394)
T ss_pred             HHH
Confidence            533

>PRK09669 putative symporter YagG; Provisional

Probab=99.37  E-value=1.8e-12  Score=106.68  Aligned_cols=161  Identities=13%  Similarity=0.049  Sum_probs=113.3

Q ss_pred             cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCc-chhHHHHHHHHHHHHHhhhhhc----cc
Q psy3615          24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTK-VVFGVSNLAMFLISFALPAAAY----WD   94 (211)
Q Consensus        24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~i~~~~~~~~~~----~~   94 (211)
                      ..++..++.+++|+++.+.|.+.++..+..++..++.|+++||    +||| +.++++....++...+......    ..
T Consensus        29 ~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~  108 (444)
T PRK09669         29 MLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGK  108 (444)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence            3455667788999999999999999999999999999999998    7774 5555676777776655443311    12


Q ss_pred             HHHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-------ccCchHHHHH
Q psy3615          95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVID-------TLGWEAAFYV  165 (211)
Q Consensus        95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~~  165 (211)
                      .+.+.+..++.+.+.........++.+|+. ++++|.+..+ ......+|..+++.+...+..       ..+|+..+.+
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i  188 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            455566667777777777777778999987 4578998877 556666666666554333222       2468878887


Q ss_pred             HHHHHHHHHHHHHhhhcCC
Q psy3615         166 TGALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~  184 (211)
                      .+++..+..++.++..+|.
T Consensus       189 ~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        189 MGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHhCCeEEe
Confidence            7777766665555544543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.37  E-value=3.8e-12  Score=100.90  Aligned_cols=160  Identities=16%  Similarity=0.074  Sum_probs=125.5

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhH-HHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFG-VSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      +....+.++.|+.|.|..+.++..+.+-.+...+.+++||++||+  |||..+. +..+...++..........|+.+..
T Consensus       271 i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~  350 (448)
T COG2271         271 INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDA  350 (448)
T ss_pred             HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHH
Confidence            344566677889999999999999999999999999999999996  6666554 4444444455555555444568888


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchh-hhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSF-GVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      ++.++.|+..-+-....-....|..|++--|++.| ...+..+ |...+....+++.|.+||...|++..+.++++.++.
T Consensus       351 ~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         351 ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence            88888898765555666777889999999999999 7766666 999999999999999999999998877777766665


Q ss_pred             Hhhhc
Q psy3615         178 MIVVY  182 (211)
Q Consensus       178 ~~~~~  182 (211)
                      .....
T Consensus       431 ~~~~~  435 (448)
T COG2271         431 LPVWN  435 (448)
T ss_pred             HHHHh
Confidence            54443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.36  E-value=8.3e-12  Score=100.98  Aligned_cols=159  Identities=9%  Similarity=-0.052  Sum_probs=112.5

Q ss_pred             ccccCCCcccccCCchhhHHH--HHHHHHHHHHhhchh-hHHHHHhCCcchhHHHHHHH-HHHHHHhh-hhhccc-HHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLV--LGSFFWLHWSTQIPG-GVLARSLGTKVVFGVSNLAM-FLISFALP-AAAYWD-YKAM   98 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~--~~~~~~~~~i~~~~~-g~l~dr~G~r~~~~~~~~~~-~i~~~~~~-~~~~~~-~~~~   98 (211)
                      .+..|.+.++.|.|.+++|..  .+...+...+.+++. ++..||+||||..++...+. +....... +....+ ...+
T Consensus        21 ~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (390)
T TIGR02718        21 MDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWA  100 (390)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHH
Confidence            344555677889999999997  466688888888888 45799999999876555332 21222222 111122 3333


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      +...++.++..+...+....+..|..++++++...+ ...+..+|..+++...+++.++.|||..|++.+.+.++..+..
T Consensus       101 ~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~  180 (390)
T TIGR02718       101 VGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCV  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence            444555666677777888888889888888888877 5577789999999998999999999999999988877766655


Q ss_pred             HhhhcC
Q psy3615         178 MIVVYD  183 (211)
Q Consensus       178 ~~~~~~  183 (211)
                      ++..|+
T Consensus       181 ~~~~~~  186 (390)
T TIGR02718       181 LWLKDR  186 (390)
T ss_pred             HHcCCC
Confidence            444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10054 putative transporter; Provisional

Probab=99.35  E-value=1.1e-11  Score=100.54  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=119.3

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW  113 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  113 (211)
                      +.+.+....+.+.....+.....+++.|++.||+++|+.+..+..+..++.....+. .++.+.+.+..++.|++.+...
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-GNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHH
Confidence            445566677788888878777888899999999999999999988887777666543 1456667778889999988888


Q ss_pred             HHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615         114 PSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPD  186 (211)
Q Consensus       114 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (211)
                      |.....+.+..|++.|+++.+.+....+|..+||.++|.+.++.|....|++.+....+..++.....+|+|.
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARPW  389 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCcc
Confidence            8888999999999999998884445668999999999999999998888888766666655555544444443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.35  E-value=1.9e-11  Score=98.71  Aligned_cols=137  Identities=11%  Similarity=0.029  Sum_probs=114.9

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcc
Q psy3615          33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLA  112 (211)
Q Consensus        33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~  112 (211)
                      ++.|.+..+.+.+.+...++..+..++.|++.||+|+|+.+..+.+..++..++....  ++.+.+++..++.|++.+..
T Consensus       233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~~~  310 (382)
T PRK11128        233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQILHCGTFTVC  310 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH
Confidence            5689999899999999999999999999999999999999999998888877777666  78888888999999999988


Q ss_pred             hHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHH
Q psy3615         113 WPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVW  173 (211)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~  173 (211)
                      .+....+..+. +++++++..+ .. ....+|..++|.++|.+.++.|+ ..++..+.+.++.
T Consensus       311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence            88888888886 5566788888 54 55677889999999999999887 4566655555443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.35  E-value=3.9e-12  Score=101.23  Aligned_cols=124  Identities=17%  Similarity=0.116  Sum_probs=110.3

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-cHHHHHHHHHHHHhhhhc
Q psy3615          33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-DYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~l~G~~~g~  111 (211)
                      +.+|.++.+.+.+.+...++..++.++.+++.||++||+.+..+..+.++......+.  + +.+.+.+..++.|++.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~  317 (365)
T TIGR00900       240 KYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT--PPNFPLFLVLWFAIGVGYGP  317 (365)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHH
Confidence            3489999999999999999999999999999999999999998887777777776665  4 477788889999999999


Q ss_pred             chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615         112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG  158 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g  158 (211)
                      ..+...+++.|..|+++|++..+ .+....+|..++|.+.+.+.++.|
T Consensus       318 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       318 INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999 779999999999999999988643

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.35  E-value=2.4e-11  Score=98.46  Aligned_cols=142  Identities=11%  Similarity=0.106  Sum_probs=117.4

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHH
Q psy3615          36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPS  115 (211)
Q Consensus        36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~  115 (211)
                      +.+....+.+.+...+...++.+..|++.||+|+|+.+.++..+.++...+....  ++.+.++..+++.|++.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~g~~~~~~~~~  327 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVVILKMLHAFEVPFLLVG  327 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHH
Confidence            4455677888888888999999999999999999999999998888877766555  77888888899999987766666


Q ss_pred             HHHHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         116 MHHLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       116 ~~~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ...+..+..+++.+++..+  .+....+|..+++.+.|++.+..||+..|.+.+++.++..++..+
T Consensus       328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            7777788888877777665  347789999999999999999999999999988887776665543

>PRK10504 putative transporter; Provisional

Probab=99.35  E-value=7.3e-12  Score=103.71  Aligned_cols=128  Identities=13%  Similarity=0.139  Sum_probs=106.0

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHhhhh
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-YWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~l~G~~~g  110 (211)
                      +..+|.++.+.++......++..++.++.|++.||+|+|+++..+..+.++...+..+.. .++.+.+.+..++.|++.+
T Consensus       289 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  368 (471)
T PRK10504        289 QIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNS  368 (471)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence            445788999999999989999999999999999999999999999888887766555432 1233444556777888888


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW  159 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw  159 (211)
                      ...+....+..+..|+++++.+.+ .++...+|..+|+.+.+.+.+..++
T Consensus       369 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        369 TRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            888889999999999999999999 8899999999999999988776554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.34  E-value=2.5e-11  Score=98.73  Aligned_cols=147  Identities=12%  Similarity=-0.048  Sum_probs=111.4

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh---cccHHHHHHHHHHHH
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA---YWDYKAMAGLRIVQG  106 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~l~G  106 (211)
                      .+.+++|+++.+.++......++..++.++.|++.||+++|+.+.++..+..++..+..+..   .++.+.+++..++.|
T Consensus       241 ~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (406)
T PRK15402        241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA  320 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            34567899999999888888888999999999999999999999988887777666554431   134566677888899


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      ++.+...+......... ++++||+..+ .+....+|..+|+.+.+.+.+..++....+......++.....
T Consensus       321 ~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK15402        321 FGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLLLV  391 (406)
T ss_pred             HHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHH
Confidence            98887776666655444 4488999999 7788889999999999999888776655555444444443333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.34  E-value=2e-11  Score=100.14  Aligned_cols=154  Identities=15%  Similarity=0.069  Sum_probs=97.4

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh--hhhcccHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP--AAAYWDYKAMAGLR  102 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~  102 (211)
                      ...++.+.+++|.+..+.+...+...++..+++++.|+++||+|||+.+.++.++.++......  ....++....+...
T Consensus       264 ~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (432)
T PRK10406        264 TYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLV  343 (432)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            3445556677899988889888888888889999999999999999988776655443332221  11112222222222


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcch-hhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSS-FGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~-~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .+.++..+...+....+.+|.+|++.|++++| .+...+ +.....|.+.+.+ +..| |...++..+...++..+..++
T Consensus       344 ~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        344 MCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            22223333344556788899999999999999 774433 3344577777755 4455 555555555555554444433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.33  E-value=1.8e-11  Score=101.35  Aligned_cols=155  Identities=16%  Similarity=0.057  Sum_probs=115.5

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-----CcchhHHHHHHHH-HHHHHhhhhhcccH-HHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-----TKVVFGVSNLAMF-LISFALPAAAYWDY-KAM   98 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~~~~~~~-i~~~~~~~~~~~~~-~~~   98 (211)
                      ...+.+++++|+|..+++...+...+...+-.+ +|.++||++     ||+.++++.++.+ +........  ++. ...
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--~~~~~~~  123 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGK--VSSAKVA  123 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccc--cchHHHH
Confidence            345666788999999999999999999888555 999999997     7777777776663 333333222  343 344


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh----hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT----SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      .+..++.+++.+...++...+..|..+ +++....+    .+....+|..+++.+++.+.+..+|+..|++.+.+.++..
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~  202 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQL  202 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence            447889999999999999999999998 55544333    2233458999999999999999999999999888877764


Q ss_pred             HHHHhhhcCCC
Q psy3615         175 VVWMIVVYDTP  185 (211)
Q Consensus       175 ~~~~~~~~~~~  185 (211)
                      +. .++.+|++
T Consensus       203 ~~-~~~~~E~~  212 (468)
T TIGR00788       203 FV-SNLSKERR  212 (468)
T ss_pred             HH-HHhccccc
Confidence            43 34456643

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.33  E-value=9.5e-11  Score=96.01  Aligned_cols=122  Identities=17%  Similarity=0.141  Sum_probs=100.9

Q ss_pred             CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615          38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH  117 (211)
Q Consensus        38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  117 (211)
                      ++.+.+++.+...++..++.++++++.||+|+|+++.++.++.+++.+...+.. ++.+.+++..++.|++.+...+...
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLPLILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888999999999999999999999999999888888776665542 3456667778888999988888889


Q ss_pred             HHhhhccC-------CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCch
Q psy3615         118 HLVAHWIP-------PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWE  160 (211)
Q Consensus       118 ~~~~~~~~-------~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~  160 (211)
                      ++++|..+       ++++|...+ .+....+|..+++.+.+.+.+..||.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99988865       456788889 77889999999999999998877663

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.33  E-value=2.2e-11  Score=94.90  Aligned_cols=154  Identities=13%  Similarity=0.060  Sum_probs=134.5

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGL  101 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (211)
                      +.+.++.+++++++|+|.+..|.++++..+...+.+++..++..|+|.++.+..++++.+++..+-...   +...++.+
T Consensus        29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~---~~~~L~~g  105 (395)
T COG2807          29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG---GLPLLFLG  105 (395)
T ss_pred             hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc---cHHHHHHH
Confidence            345677788999999999999999999999999999999999999999999999999999999887653   56788889


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhhhh-hcchhhhhhhhhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHh
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSY-LGSSFGVALSYPLCGVVIDTL-GWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~g~~~~~~~~~~l~~~~-gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      -.+.|.+.+......+.++-+.||+ +-+..++.| ...++|..+++.+.-.+.++. |||......+..+++..++++.
T Consensus       106 t~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         106 TLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             HHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999985 477788844 888888888888888887776 7999999988888887776644

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.31  E-value=3.6e-11  Score=97.29  Aligned_cols=148  Identities=13%  Similarity=0.003  Sum_probs=110.0

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh-hh---cccHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA-AA---YWDYKAMAGL  101 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~-~~---~~~~~~~~~~  101 (211)
                      ..+++ +|.|+++++.+++...... ...++.++.|++.||+|+|+.+.++..+.++..+.... ..   .++.......
T Consensus       231 ~~~~l-~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       231 SKLYL-VDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             hhHHH-HhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            33444 5589999999999887764 66677899999999999999998877665333222211 10   1223334444


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCC-CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  175 (211)
                      ..+.+++.+...+...+...+..++ +++++.++ .+...++|..++|.++|.+.++.|++..|+..+++.++..+
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            5556677777778888888888776 78999999 77888999999999999999999999999887776665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00898 2A0119 cation transport protein

Probab=99.30  E-value=5e-11  Score=99.55  Aligned_cols=137  Identities=14%  Similarity=0.005  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615          46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP  125 (211)
Q Consensus        46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~  125 (211)
                      .....+...++.++.+++.||+|||+.+.++.++.+++.++..+......+..++..++.+++.+..++....+..|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            34455667788889999999999999999999888888777666522222445555666677777778888999999999


Q ss_pred             CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      ++.|+++++ ......+|..++|.+.+ + ...++..++.+.+...++..++.+ ++||+.
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~  498 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETK  498 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCC
Confidence            999999999 77888999999999988 4 335566777777777776665554 466654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.30  E-value=1.8e-10  Score=90.15  Aligned_cols=152  Identities=14%  Similarity=0.096  Sum_probs=113.7

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      -+++|+++.+++.+........++...+.|.++||+|||+..+..+++.+++++..- .  ++++.++++|++.|++...
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~-~--~~~~~L~~GRvlgGiaTSL  137 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH-S--SNYPVLLLGRVLGGIATSL  137 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999998887542 3  7899999999999999998


Q ss_pred             chHHHHHH-hhhccCCCchhhHhh-hh-----hcchhhhhhhhhhhhhhhcccCc--hHHHHHHHHHHHHHHHHHHhhhc
Q psy3615         112 AWPSMHHL-VAHWIPPTERSQFIT-SY-----LGSSFGVALSYPLCGVVIDTLGW--EAAFYVTGALGVVWWVVWMIVVY  182 (211)
Q Consensus       112 ~~~~~~~~-~~~~~~~~~r~~~~~-~~-----~~~~~g~~~~~~~~~~l~~~~gw--~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      .+.+--++ +.|+-..+.+....+ ..     ..+++-.+.+..++.++.+..+.  ..+|.....+..+..++....++
T Consensus       138 LfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  138 LFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccc
Confidence            87776654 445533332333333 22     22344456666777777776654  77888877777777666665566


Q ss_pred             CCCC
Q psy3615         183 DTPD  186 (211)
Q Consensus       183 ~~~~  186 (211)
                      |...
T Consensus       218 ENyg  221 (354)
T PF05631_consen  218 ENYG  221 (354)
T ss_pred             ccCC
Confidence            6543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.30  E-value=1e-11  Score=103.10  Aligned_cols=148  Identities=12%  Similarity=0.026  Sum_probs=98.5

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcc-------hhHHHHHHHHHHHHHhhhhhcccHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKV-------VFGVSNLAMFLISFALPAAAYWDYKAMAG  100 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  100 (211)
                      ++++.+++|++..+.+.+.++..++..++.+++|+++||++||+       ...+...+.++..++....  ++.+..++
T Consensus       276 p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--~~~~~~~~  353 (476)
T PLN00028        276 AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--NSLGAAIV  353 (476)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc--chHHHHHH
Confidence            44456778999999999999999999999999999999998752       2222333333333333333  44555555


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ..++.+++.+...+...+++.+..| ++++...+ ......+|..+++.+.+ ..+..+|+..|++.+++.++..++.++
T Consensus       354 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        354 VMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence            5556666555444555555666554 67999888 66666777777766543 122346999999988777776665544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.29  E-value=3.8e-11  Score=96.96  Aligned_cols=150  Identities=8%  Similarity=-0.072  Sum_probs=108.6

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      .+.+.+.+|.++.+.+++.+...++..+++++.|++.||+|+|+.+..+..+.+++.++.... .++.+...+..++.++
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~  301 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-GGMKTASLIFAFICCA  301 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence            455666789999999999999999999999999999999999999998888877776554332 1344555566666666


Q ss_pred             hhhcchHHHHH-HhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHh
Q psy3615         108 IGGLAWPSMHH-LVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       108 ~~g~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      +.....+.... ...+..+++.++... ......+|..+||.+++++.+. .+|++.+.+.+.+..+.......
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        302 GLFALSAPLQILLLQNAKGGELLGAAG-GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHhhhHHHHHHHHHhCCcchHHHHHH-HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            65544444343 344444444444433 3456789999999999999985 67999999887776665544443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.29  E-value=6.1e-11  Score=94.23  Aligned_cols=144  Identities=17%  Similarity=0.081  Sum_probs=122.8

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      .+++|++..+...+.....+..+++++++|++.||+|.|+++.++.++..+.++...+.  .....+.+...+.|...|.
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--~~~~~f~i~gll~g~s~G~  357 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--EGELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--cccHHHHHHHHHHHHhcch
Confidence            55899999999999999999999999999999999999999999999998877766555  4556777888999999999


Q ss_pred             chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHH
Q psy3615         112 AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~  177 (211)
                      .++...++..+..|+++-++..| ..........+||.+.+.+.+..| -|..+.....+..+..++.
T Consensus       358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            99999999999999999999999 668999999999999999988765 5655555555554444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.28  E-value=6.5e-11  Score=89.41  Aligned_cols=132  Identities=12%  Similarity=-0.030  Sum_probs=104.4

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-----ccHHH
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-----WDYKA   97 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-----~~~~~   97 (211)
                      .++...|.+++.+|+|.+|...+.+.-.+|..+ .++.|.+.|++|++.++.+|.+...++..+..+...     .++|.
T Consensus        20 ~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~   98 (250)
T PF06813_consen   20 TFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL   98 (250)
T ss_pred             chhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence            345566788999999999999999999999886 588999999999999999999999999887776532     24667


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT  156 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~  156 (211)
                      +.+..++.|.+......+......+.|| ++||++.+ .-....+++.+-..+-..+.+.
T Consensus        99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen   99 MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            7777777777777666777777778888 57999999 6677777776655555555443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.28  E-value=2.6e-11  Score=101.30  Aligned_cols=137  Identities=10%  Similarity=-0.076  Sum_probs=93.1

Q ss_pred             HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615          48 SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP  125 (211)
Q Consensus        48 ~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~  125 (211)
                      ...++..++.++.+++.||+|||++++++..+.+++..+..+...+  +...+....+...+......+....+.+|.+|
T Consensus       343 ~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p  422 (502)
T TIGR00887       343 IALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFP  422 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence            3445566688889999999999999988887777766555443111  11111111111122222234556777899999


Q ss_pred             CCchhhHhh-hhhcchhhhhhhhhhhhhhhcc----------cCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDT----------LGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~----------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      .+.|+++.+ .+....+|.+++|.+.+.+.+.          .++...|++.+++.++..+.. +++||++
T Consensus       423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~  492 (502)
T TIGR00887       423 TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETK  492 (502)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCC
Confidence            999999999 8889999999999999988874          344567787777777665544 4567654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.27  E-value=1e-10  Score=95.12  Aligned_cols=147  Identities=12%  Similarity=0.033  Sum_probs=102.7

Q ss_pred             CCCcccccCCchhhHHHHHHHH-HHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hhhcccHHHHHHHHH-
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFF-WLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AAAYWDYKAMAGLRI-  103 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~-  103 (211)
                      +.+.+++|+++.+.+++..... ++..++.+++|++.||+|+|+.+..+..+..+..+...   +. .++.+.+++..+ 
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~  312 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence            3456778999999999886654 56889999999999999999988777766655543332   22 134455554443 


Q ss_pred             ---HHHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         104 ---VQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       104 ---l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                         ..|++.+...+....++.+.+|.++++.   .....+++...+.+++|.+.++.||+..|...++++++..++.+.
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQYAL---LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence               4455556666667777777777554432   334446676666778999999999999999988887776555433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.27  E-value=1.2e-10  Score=94.57  Aligned_cols=145  Identities=12%  Similarity=0.079  Sum_probs=112.3

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHH-HHHhhhhhcccHHHHHHHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLI-SFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      .|.+.+++|+++++.+.....+.++..++.++.+++.||.+ |+.+..+..+..+. .++....  ++.+.+.+..++.|
T Consensus       240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~l~G  316 (394)
T PRK10213        240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG--SDKIVATGVAIIWG  316 (394)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Confidence            45556778999999999999999999999999999999964 44444444443333 3333333  56777778889999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      ++.+...+...+.+.+..| +++++..+ .+...++|..+|+.++|++.+..|++..++..+++..+..+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            9999888988989999887 55677777 667888999999999999999999988888877665554433

>KOG2325|consensus

Probab=99.26  E-value=7.8e-11  Score=96.08  Aligned_cols=154  Identities=16%  Similarity=0.081  Sum_probs=122.1

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHh-hhhhcc--cHHHHHHHHHHHHhhh
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFAL-PAAAYW--DYKAMAGLRIVQGVIG  109 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~-~~~~~~--~~~~~~~~~~l~G~~~  109 (211)
                      |.+-+.+..|++.+...++.+++++..|+...|.+. |+.++.+.++..++.++. .+...+  .-+.++++|++.|+|.
T Consensus        65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~  144 (488)
T KOG2325|consen   65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV  144 (488)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc
Confidence            366677789999999999999999999999999986 888999999999999887 443323  4678899999999997


Q ss_pred             hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------------cCchHHHHHHHHHHHHHHH
Q psy3615         110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------------LGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------------~gw~~~~~~~~~~~~~~~~  175 (211)
                      | ......+++++..-.++|.++++ ...+..+|..+||.+...+...             .-+..+-|++..+.++..+
T Consensus       145 ~-n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v  223 (488)
T KOG2325|consen  145 G-NFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIV  223 (488)
T ss_pred             c-cHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHH
Confidence            7 45667889998887888999999 7788888888888887665431             1134566777888888777


Q ss_pred             HHHhhhcCCCCCC
Q psy3615         176 VWMIVVYDTPDQH  188 (211)
Q Consensus       176 ~~~~~~~~~~~~~  188 (211)
                      +..++.+|.+++.
T Consensus       224 ~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  224 IILFFFKEVYRGI  236 (488)
T ss_pred             HHHhheeecccCc
Confidence            7777777765543

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.26  E-value=1.3e-10  Score=93.47  Aligned_cols=146  Identities=10%  Similarity=0.152  Sum_probs=126.4

Q ss_pred             CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615          38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMH  117 (211)
Q Consensus        38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~  117 (211)
                      +....|.+.+..-+.-++...+..++.+|+|.|+.++++..+.++=..++++.  ++.+.+.+.+.+.|+..+.......
T Consensus       257 g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  257 GNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888889999999999999999999999999999999999998999888  8999999999999999999999999


Q ss_pred             HHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         118 HLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       118 ~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      .++++.+|++...+...  .....++|..+.++++|.+.|+.|.+.+|++++.+.++..++..+.+++++
T Consensus       335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            99999999988777777  448899999999999999999999999999999998888888877776543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504|consensus

Probab=99.25  E-value=1.3e-11  Score=102.53  Aligned_cols=152  Identities=21%  Similarity=0.191  Sum_probs=132.8

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      ...+...++.++++.+...+.++..+...++.+..|+++|+..  ++.+..++.+..+++.+.+++.  ++++.++....
T Consensus       319 ~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~--~~~~~l~~~~~  396 (509)
T KOG2504|consen  319 VYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA--TTYVGLIVFSI  396 (509)
T ss_pred             HHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHH
Confidence            3445556789999999999999999999999999999999988  4555567777777777777777  88999999999


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~  179 (211)
                      +.|++.|.........+.|..+.++-..+.| ......++..+||++.+++.+..+ |...|+.+++..++...++++
T Consensus       397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence            9999999998888899999999999999999 889999999999999999999887 999999999888887766554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.24  E-value=4.7e-11  Score=108.65  Aligned_cols=144  Identities=16%  Similarity=0.156  Sum_probs=117.6

Q ss_pred             ccCCCcccccCCch-hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSN-VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQ  105 (211)
Q Consensus        27 ~~~~i~~~~~~s~~-~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~  105 (211)
                      .+.++.+.+|++.. +.+++.+...++.++++++.|++.||+++++++.++.++.+++.++..+.  .+.+.+++..++.
T Consensus       255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  332 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--PSLASVLVLFFLF  332 (1146)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--hhHHHHHHHHHHH
Confidence            44555677899988 99999999999999999999999999999999998888888877777666  6777888888999


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHH
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVV  172 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~  172 (211)
                      |++.+...+...+++.+..|+++||++++ .+....+|..+++.+++.+... .++...+++.+.+.++
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            99999888889999999999999999999 7788888888887777665442 3455556555544433

>TIGR00895 2A0115 benzoate transport

Probab=99.24  E-value=3.5e-11  Score=96.88  Aligned_cols=123  Identities=15%  Similarity=0.056  Sum_probs=100.3

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI  108 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~  108 (211)
                      |.+.+++|.++.+.+...+...++..++.++.|++.||+|+|+.+. ...+.++...+.... .++.+..++..++.|++
T Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~  351 (398)
T TIGR00895       274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGST-LFSPTLLLLLGAIAGFF  351 (398)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHH
Confidence            3556778899999999999999999999999999999999995444 333444433333221 25667777888999999


Q ss_pred             hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615         109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV  153 (211)
Q Consensus       109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l  153 (211)
                      .+...+...+++.|.+|+++|+++.+ ......+|..++|.+.|++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       352 VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999999999999 7788899999999999875

>PRK09848 glucuronide transporter; Provisional

Probab=99.23  E-value=1.9e-10  Score=94.75  Aligned_cols=130  Identities=12%  Similarity=0.014  Sum_probs=101.2

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      .+++.+|.++...++......++..++.++.+++.||+|+|+++.++.++..++.+...+....+.+.+.+..++.|+|.
T Consensus       254 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~  333 (448)
T PRK09848        254 YVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQ  333 (448)
T ss_pred             eEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            34556776655555545555677888999999999999999999999988888777665543345666777788899999


Q ss_pred             hcchHHHHHHhhhccCCC-------chhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615         110 GLAWPSMHHLVAHWIPPT-------ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW  159 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~-------~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw  159 (211)
                      +...+...++.+|..|.+       ++|...+ ......+|..+++.+.+.+.+..|+
T Consensus       334 ~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        334 GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999998888754       3588888 7788899999999999888766554

>TIGR01272 gluP glucose/galactose transporter

Probab=99.23  E-value=2.3e-10  Score=89.92  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=105.3

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW  113 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  113 (211)
                      .+|+++.+.+...+.+..++.++++..+++.||+|+|+++.++..+..++.++....  ++... ...-++.|++.+..+
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~--~~~~~-~~~~~l~g~~~s~i~  248 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT--HGYVA-MWFVLALGLFNSIMF  248 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CCHHH-HHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999988888877776555444  33322 345567899999999


Q ss_pred             HHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHH
Q psy3615         114 PSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTG  167 (211)
Q Consensus       114 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~  167 (211)
                      |...+...+.+|++ .+++.++.....+|..+.|++.|.+.|..|.+.+|++..
T Consensus       249 P~~~s~a~~~~~~~-~~~asai~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       249 PTIFSLALNALGRH-TSQGSGILCLAIVGGAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHHhhhhhh-hhhhHHHHHHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence            99999999988754 555556445667899999999999999989888887443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.23  E-value=1.1e-10  Score=94.97  Aligned_cols=147  Identities=16%  Similarity=0.100  Sum_probs=108.9

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH-HhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR-SLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      |...++.+.++.+.+++.+...++......+.+++.| |++.++.+..+..+.+++..+....  ++++.+.+..++.++
T Consensus       232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~  309 (400)
T PRK11646        232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--SNLQQLFTLICLFYI  309 (400)
T ss_pred             hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH
Confidence            3333444447788888888877776666655566665 5676777778887777777766666  667777777788888


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---C-chHHHHHHHHHHHHHHHHH
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---G-WEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---g-w~~~~~~~~~~~~~~~~~~  177 (211)
                      +.+...|...+++.+..|+++|+++++ ......+|..+||.+.|++.++.   + ....++..+...++..+..
T Consensus       310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            888888888999999999999999999 77899999999999999998874   3 2455555555555544443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.21  E-value=4.7e-11  Score=95.42  Aligned_cols=136  Identities=10%  Similarity=-0.053  Sum_probs=98.9

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHH---HHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLA---MFLISFALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~l  104 (211)
                      +..+.+++|.++.+.+...+...++..++.++.|++.||+.+|+........   ..++..........+.....+..++
T Consensus       240 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (379)
T TIGR00881       240 PLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFA  319 (379)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence            3445677899999999999999999999999999999987443322222211   1112222212111344555666677


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHH
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAF  163 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~  163 (211)
                      .|+......+....+..|.+|+++|+++.+ ......+|..++|.+.+.+.++.||++.|
T Consensus       320 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       320 LGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            777655556666788999999999999999 77889999999999999999999998754

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.20  E-value=2e-10  Score=93.13  Aligned_cols=145  Identities=14%  Similarity=0.026  Sum_probs=111.2

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      .+++.+|.++.+.|.+.+...++..++++..+++.||+++|+++..+. ..++......+.  ++++......++.|++.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~  307 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQ--HSLLPAYPLLILIGALG  307 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHH--hHHHHHHHHHHHHHHhh
Confidence            456678999999999999999999999999999999999998888775 334444444444  56666777788899998


Q ss_pred             hcchHHHHHHhhhccCCCc-hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         110 GLAWPSMHHLVAHWIPPTE-RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~~-r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +...+...+.+.+..|++. +|++.+ .+...+++..++..+.+.+ +..|-+..+.+.+...++...+..
T Consensus       308 g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        308 GFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             hhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            8888888888888766554 799999 7899999999999888855 557777666665555444444433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.19  E-value=2.8e-11  Score=100.40  Aligned_cols=162  Identities=14%  Similarity=0.033  Sum_probs=112.4

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH----HhCC-cchhHHHHHHHHHHHHHhhhhhc--c--
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR----SLGT-KVVFGVSNLAMFLISFALPAAAY--W--   93 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~G~-r~~~~~~~~~~~i~~~~~~~~~~--~--   93 (211)
                      ...++..++.+.+|+++..+|.+..+..+..++..++.|.++|    |+|| |+.++++....+++..++.....  +  
T Consensus        25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~  104 (473)
T PRK10429         25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTA  104 (473)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccH
Confidence            3345566778889999999999999999999999999999999    6698 55666777777777655543210  1  


Q ss_pred             cHHHHHHHHHHHHhhhhcchHHHHHHhhhcc-CCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-------ccCchHHHH
Q psy3615          94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWI-PPTERSQFIT-SYLGSSFGVALSYPLCGVVID-------TLGWEAAFY  164 (211)
Q Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~-~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~  164 (211)
                      .+..+.+..++.+++.........++..|.. ++++|.+..+ ...+.++|..+.+.+...+.+       ..+|+....
T Consensus       105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~  184 (473)
T PRK10429        105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTL  184 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence            1334555666778888888888889999988 5789999888 566666665555444333221       134666666


Q ss_pred             HHHHHHHHHHHHHHhhhcCC
Q psy3615         165 VTGALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~  184 (211)
                      +.+++..+..++.++..+|.
T Consensus       185 i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        185 VLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHHcCceec
Confidence            66666555555555445554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.19  E-value=6.3e-11  Score=96.69  Aligned_cols=142  Identities=15%  Similarity=-0.043  Sum_probs=95.5

Q ss_pred             cccCCCcc-cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcch-hHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615          26 QQDGDSGS-LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVV-FGVSNLAMFLISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        26 ~~~~~i~~-~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      ..++.+++ ..+.+..+.+.......++..++.+..|+++||+++|+. +.......+++..+. ... ++....+....
T Consensus       264 ~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~  341 (412)
T TIGR02332       264 WTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA-SAT-DHNLIQLLGII  341 (412)
T ss_pred             HHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH-Hhc-CCHHHHHHHHH
Confidence            34444444 246677788999999999999999999999999998775 333333333332222 121 22222222222


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHH
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGAL  169 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~  169 (211)
                      +.+++.....+.......|.+|+++|++++| .+...++|..++|.+.+.+.+..| |++.+++.+++
T Consensus       342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       342 MASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            3333333233444455567889999999999 888999999999999999999875 99888876554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10133 L-fucose transporter; Provisional

Probab=99.19  E-value=4.8e-10  Score=92.25  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=108.8

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      ++.+|+++.+.++....+.++..+++++.|++.||+|+|+++..+..+..+..++..+.  ++. ..+....+.|++.+.
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~--~~~-~~~~~~~l~glg~~~  363 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGH-VGLIALTLCSAFMSI  363 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CCh-HHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999988887777666555444  333 234567789999999


Q ss_pred             chHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHH
Q psy3615         112 AWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVW  173 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~  173 (211)
                      .+|...+...+.+++ +.+.+.+......+|..++|++.+.+.+..| -+..|++.....+..
T Consensus       364 i~P~~~s~a~~~~~~-~~~~as~l~~~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~  425 (438)
T PRK10133        364 QYPTIFSLGIKNLGQ-DTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_pred             HHHHHHHHHHcccch-hhccchhHHhHHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            999999999999875 3566666333445678889999999999887 778887654444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=1e-10  Score=92.82  Aligned_cols=154  Identities=18%  Similarity=0.101  Sum_probs=121.7

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-----ccHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-----WDYKAMAGL  101 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~  101 (211)
                      ++.+++++|++++.+.+.....+.+...+..+.+|+++||+|.+|++.+..+.++++..+..+...     .+...+++.
T Consensus       241 l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  320 (417)
T COG2223         241 LPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAV  320 (417)
T ss_pred             HHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHH
Confidence            445678899999999999999999999999999999999999999999999998888877765521     234444444


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .+.+++..|.....+..++..++|+ +-|.+.| +.....+|+..-|...+...+..| +...|++...+.+++.++.+.
T Consensus       321 ~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         321 FLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455554455667777888864 6888888 889999999999999999988888 888899888888887776654


Q ss_pred             hh
Q psy3615         180 VV  181 (211)
Q Consensus       180 ~~  181 (211)
                      ..
T Consensus       400 ~y  401 (417)
T COG2223         400 LY  401 (417)
T ss_pred             HH
Confidence            33

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.17  E-value=9e-11  Score=97.36  Aligned_cols=130  Identities=8%  Similarity=0.053  Sum_probs=109.7

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh--hhcccHHHHHHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA--AAYWDYKAMAGLRIVQ  105 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~l~  105 (211)
                      +.++++.+|.++.+.++......++..++.++.|++.||+|||+.+.++..+.+++..+..+  ....+.+.+....++.
T Consensus       279 p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  358 (485)
T TIGR00711       279 PLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIR  358 (485)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence            34456678999999999999999999999999999999999999999998888887776652  2223456667778899


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL  157 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~  157 (211)
                      |++.+...+.......+..|+++|+++.+ .+....+|..+|+.+.+.+.++.
T Consensus       359 g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       359 GFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888788888888899999999999 77889999999999999887743

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.15  E-value=1.5e-10  Score=105.52  Aligned_cols=149  Identities=14%  Similarity=0.041  Sum_probs=116.8

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh--------------
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA--------------   90 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~--------------   90 (211)
                      ...+.++.+.+|.+..+.+++.+.+.++.++++++.|++.|+.++++.+..+.++.++..+...+.              
T Consensus       246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  325 (1140)
T PRK06814        246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSI  325 (1140)
T ss_pred             HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccch
Confidence            344555667789999999999999999999999999999998887777766666665554433321              


Q ss_pred             ----hcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc-ccCchHHHH
Q psy3615          91 ----AYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID-TLGWEAAFY  164 (211)
Q Consensus        91 ----~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-~~gw~~~~~  164 (211)
                          ..++.+.+++..++.|++.+...+...+++.+..|+++||+++| .++...+|..+++++.+.+.+ ..++...++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~  405 (1140)
T PRK06814        326 LVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIIL  405 (1140)
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence                11456777788899999999999999999999999999999999 888899999999999988874 345666666


Q ss_pred             HHHHHHHHH
Q psy3615         165 VTGALGVVW  173 (211)
Q Consensus       165 ~~~~~~~~~  173 (211)
                      +.+.+.++.
T Consensus       406 ~~~~~~~~~  414 (1140)
T PRK06814        406 FIALANLIV  414 (1140)
T ss_pred             HHHHHHHHH
Confidence            555543433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.14  E-value=6e-10  Score=90.16  Aligned_cols=134  Identities=7%  Similarity=-0.063  Sum_probs=91.1

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g  110 (211)
                      .++++|.++.+.+...+...++..++.++.+++.||+|+|+.+.++..+..++.+...+.  ++.+..+....+.+.+.+
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~~  307 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALS--PSHAVSLFGITLICAGFS  307 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999988888877776655  333333333344444433


Q ss_pred             cchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHH
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALG  170 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~  170 (211)
                      ...+.  ....+..|.++|+..  ......++..+++.+++++.++.|+.......+.+.
T Consensus       308 ~~~~~--~~~~~~~~~~~~~g~--~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        308 VGFGV--AMSQALGPFSLRAGV--ASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HHhHH--HHHHHhccCcccccH--HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            33332  233444455555422  334455677777888888888778765555544433

>KOG0569|consensus

Probab=99.14  E-value=6.9e-10  Score=91.05  Aligned_cols=158  Identities=9%  Similarity=-0.031  Sum_probs=117.4

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--cccH--H---HHHHH
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--YWDY--K---AMAGL  101 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--~~~~--~---~~~~~  101 (211)
                      .++-++-|++..+..+......+...+..+.+.++.||+|||+.++.+..+..+..+++....  ....  |   ..+++
T Consensus       294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~  373 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA  373 (485)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            345566789999999999999999999999999999999999999999999988877665432  1111  1   12334


Q ss_pred             HHHHHhhhhc-chHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         102 RIVQGVIGGL-AWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       102 ~~l~G~~~g~-~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .++..+..+. ..|...-+.+|.+|.+.|..+++ ......+...+-......+.+..|- ..|....+.+.+..+..++
T Consensus       374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~  452 (485)
T KOG0569|consen  374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR  452 (485)
T ss_pred             HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence            4444444333 46788899999999999999999 6666666666555555555565564 6777778888888888888


Q ss_pred             hhcCCCCC
Q psy3615         180 VVYDTPDQ  187 (211)
Q Consensus       180 ~~~~~~~~  187 (211)
                      .+||++.+
T Consensus       453 ~lPETkgr  460 (485)
T KOG0569|consen  453 YLPETKGR  460 (485)
T ss_pred             hCcccCCC
Confidence            89987543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.14  E-value=1.5e-09  Score=88.06  Aligned_cols=150  Identities=14%  Similarity=0.158  Sum_probs=114.4

Q ss_pred             cccc-CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH----HHHHHHHh
Q psy3615          33 SLFH-WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA----GLRIVQGV  107 (211)
Q Consensus        33 ~~~~-~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~l~G~  107 (211)
                      ++.| .+....+.+.++..+.-.+.....+++..|+|.|+++.++.+..++=..+.+...+ +.+...    ....+.|+
T Consensus       235 ~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~-~~~~~~~~~~l~q~lhG~  313 (400)
T PF03825_consen  235 QELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD-PWPFIVALQLLGQLLHGL  313 (400)
T ss_pred             HHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhhhhH
Confidence            3444 56667777778888888899999999999999999999999999887777665522 223322    23456899


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchH------HHHHHHHHHHHHHHHHHh
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEA------AFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~------~~~~~~~~~~~~~~~~~~  179 (211)
                      ..+..+.+...++.+..|++.|+++.+ .. ....+|..+|..++|++.|+.|-+.      .+.+.+++.++..++.++
T Consensus       314 tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  314 TFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999 55 6789999999999999999876443      444555554444444444


Q ss_pred             hhcC
Q psy3615         180 VVYD  183 (211)
Q Consensus       180 ~~~~  183 (211)
                      ..+|
T Consensus       394 ~fk~  397 (400)
T PF03825_consen  394 LFKP  397 (400)
T ss_pred             hccC
Confidence            4443

>TIGR00896 CynX cyanate transporter

Probab=99.13  E-value=2.5e-10  Score=91.21  Aligned_cols=125  Identities=15%  Similarity=0.042  Sum_probs=97.3

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      +.++.|.+..+.+.+.+...++..+++++.|++.||+ +||+.+.++..+.+++.+...+.  ++.... ...++.|++.
T Consensus       223 ~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~l~g~~~  299 (355)
T TIGR00896       223 ILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--PMHGLW-AWALVLGLGQ  299 (355)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--hhhHHH-HHHHHHHHhh
Confidence            3446799999999999999999999999999999999 56667777777777776655554  322222 2456789999


Q ss_pred             hcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615         110 GLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG  158 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g  158 (211)
                      +..++...+.+.+..+ +++++...+ .+....++..++|.+.|++.++.|
T Consensus       300 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       300 GGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             hhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888887777765554 456788888 677888888999999999998776

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.13  E-value=2.3e-10  Score=95.56  Aligned_cols=128  Identities=13%  Similarity=0.091  Sum_probs=108.7

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAGLRIVQG  106 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~G  106 (211)
                      +.++++.+|.|+.+.+.......++..++.++.|++.||+|+|+.+..+.++.+++..+.... ..++.+......++.|
T Consensus       283 ~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G  362 (495)
T PRK14995        283 AQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLG  362 (495)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            445567789999999999999999999999999999999999999998888887776655432 1234556667788999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID  155 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~  155 (211)
                      ++.|...+.....+.+..|+++++.+.+ .+...++|..+|+.+.+.+.+
T Consensus       363 ~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        363 FSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888888999999999999999 779999999999999998865

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.12  E-value=1.1e-09  Score=88.10  Aligned_cols=132  Identities=10%  Similarity=0.094  Sum_probs=97.2

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc---ccHHHHHHHHHHHH
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY---WDYKAMAGLRIVQG  106 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~l~G  106 (211)
                      .+.+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..++..++.....   ++...++...++.|
T Consensus       232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  311 (385)
T TIGR00710       232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVG  311 (385)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999998888777776665544311   22344555677888


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcc-hhhhhhhhhhhhhhhcccCchHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGS-SFGVALSYPLCGVVIDTLGWEAAF  163 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~-~~g~~~~~~~~~~l~~~~gw~~~~  163 (211)
                      ++.+...+.......|..| ++|+++.+ .+... ..|...++.++ .+.+..+|...+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~-~~~~~~~~~~~~  368 (385)
T TIGR00710       312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS-LIHGNTAWPMSL  368 (385)
T ss_pred             HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH-hccccChHHHHH
Confidence            8888888888888888886 67999999 66444 44555555544 444444444333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.11  E-value=4.9e-11  Score=97.76  Aligned_cols=158  Identities=15%  Similarity=0.121  Sum_probs=120.2

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH----HhCCcchh-HHHHHHHHHHHHHhhhh-h-cc----c
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR----SLGTKVVF-GVSNLAMFLISFALPAA-A-YW----D   94 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~G~r~~~-~~~~~~~~i~~~~~~~~-~-~~----~   94 (211)
                      +..+++.+.+|+++...|.+..+..+..++..++.|.++|    |+||||.. +++....+++..++... . ..    .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4566778889999999999999999999999999999999    89966555 56777777777766543 1 01    1


Q ss_pred             HHHHHHHHHHHHhhhhcchHHHHHHhhhccCC-CchhhHhh-hhhcchhhhhhhhhhhhhhhccc-------CchHHHHH
Q psy3615          95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYLGSSFGVALSYPLCGVVIDTL-------GWEAAFYV  165 (211)
Q Consensus        95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~-------gw~~~~~~  165 (211)
                      ...+.+..++..++.........++..|..+. ++|.+..+ -..+..+|..+...+...+.+..       +|++..++
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            23456677777888888888899999999974 68998888 65667777765555555444321       68888888


Q ss_pred             HHHHHHHHHHHHHhhhcC
Q psy3615         166 TGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~  183 (211)
                      .+++.++..++..+..+|
T Consensus       183 ~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHhhhhhheeee
Confidence            888888877777777776

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.08  E-value=4.5e-10  Score=93.00  Aligned_cols=154  Identities=11%  Similarity=0.067  Sum_probs=102.0

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH--------HHHHHHHHHHHHhhhhh-cccH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG--------VSNLAMFLISFALPAAA-YWDY   95 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~--------~~~~~~~i~~~~~~~~~-~~~~   95 (211)
                      ...+.++.+.+|.+..+.++..++..++..++.++.|+++||+++|+...        .+............... ..+.
T Consensus       282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (465)
T TIGR00894       282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAF  361 (465)
T ss_pred             HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            34456667788999999999999999999999999999999987654321        11111111111111111 1233


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc---CchHHHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL---GWEAAFYVTGALGV  171 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~---gw~~~~~~~~~~~~  171 (211)
                      ...++.-.+.+.+.+...+.......+..|+ .+|..++ .+....+|..++|.+.+.+.+..   +|+..|.+.+...+
T Consensus       362 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~  440 (465)
T TIGR00894       362 YLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNI  440 (465)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHH
Confidence            3334444444555554455555555566664 7999999 77888999999999999887653   38888888887777


Q ss_pred             HHHHHHHh
Q psy3615         172 VWWVVWMI  179 (211)
Q Consensus       172 ~~~~~~~~  179 (211)
                      +..++..+
T Consensus       441 i~~i~~~~  448 (465)
T TIGR00894       441 LCVIFYLI  448 (465)
T ss_pred             HHHHHeee
Confidence            76655543

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.08  E-value=4.4e-09  Score=86.40  Aligned_cols=136  Identities=15%  Similarity=0.044  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh----cccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615          46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA----YWDYKAMAGLRIVQGVIGGLAWPSMHHLVA  121 (211)
Q Consensus        46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  121 (211)
                      ..+..+...+.++++|+++||+|+|+++.++.+...+.........    ..+++.+.+..+...++.|.....+..++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            4445677888999999999999999999999887777664432221    124566666555555666666667777777


Q ss_pred             hccCC---------------------CchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHH
Q psy3615         122 HWIPP---------------------TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       122 ~~~~~---------------------~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.+|+                     ++-|.+.| ......+|+.+-|.+.+...+..| +...|+...+..+++..+.+
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            77764                     14556666 668888888899988888877655 77888888888888777776


Q ss_pred             hhh
Q psy3615         179 IVV  181 (211)
Q Consensus       179 ~~~  181 (211)
                      .+.
T Consensus       452 ~~y  454 (462)
T PRK15034        452 LVY  454 (462)
T ss_pred             HHh
Confidence            654

>KOG3762|consensus

Probab=99.08  E-value=4.4e-10  Score=91.68  Aligned_cols=146  Identities=14%  Similarity=0.094  Sum_probs=128.9

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      .++.+..+...|........+-.+.-++.+++.+|+|+-+++.+++.++++=.+..+..  +|.|..+...+++|+..+.
T Consensus       398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L--~n~W~vLPieilqgit~al  475 (618)
T KOG3762|consen  398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL--QNPWMVLPIEILQGITHAL  475 (618)
T ss_pred             HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh--cCchheeeHHHHHHHHHHH
Confidence            35566666677777777777888888999999999999999999999999988888777  9999999999999999999


Q ss_pred             chHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         112 AWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .|.+..++++...|++.|.++.+ .. ....+|-.+|.+++|.+.++++-|..|..+++.+++.+++...
T Consensus       476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999 66 8889999999999999999999999999988888776655443

>KOG4686|consensus

Probab=99.05  E-value=1.3e-09  Score=82.76  Aligned_cols=126  Identities=14%  Similarity=0.063  Sum_probs=103.0

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHH-HHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLI-SFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      ...++.+|+|+...+.+.+......++.+++.|.++||+|++...+.+..+..+. .....+.    .+.-+....+.|+
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft----~lsPy~~m~~lGL  364 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT----FLSPYTSMTFLGL  364 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh----hccHHHHHHHHhh
Confidence            3457899999999999999999999999999999999999998887766665553 3333222    3344566778888


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG  158 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g  158 (211)
                      +.+..-......++...|.++.|++.+ .+...++|-.+.|++++.+.+..|
T Consensus       365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            887766667788888899999999999 999999999999999999998765

>PRK11043 putative transporter; Provisional

Probab=99.05  E-value=2.8e-09  Score=86.54  Aligned_cols=131  Identities=8%  Similarity=-0.114  Sum_probs=96.5

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh---hhhcccHHHHHHHHHHHH
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP---AAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~l~G  106 (211)
                      .+.+++|.++.+.++......++..++....+++.||+|+|+.+.......+++.+...   ....++.+.++....+.|
T Consensus       228 ~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (401)
T PRK11043        228 FILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMA  307 (401)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            34466899999999988888889999999999999999999877666555544433222   111234555556667788


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEA  161 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~  161 (211)
                      ++.+..++.......+..| ++++++.+ .+.....+...++.+.+.+.+......
T Consensus       308 ~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        308 AANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            8888888888888777776 57999999 777777777888888888877543333

>PRK09669 putative symporter YagG; Provisional

Probab=99.04  E-value=1.3e-08  Score=83.83  Aligned_cols=120  Identities=12%  Similarity=0.109  Sum_probs=90.5

Q ss_pred             hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHH
Q psy3615          40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL  119 (211)
Q Consensus        40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  119 (211)
                      +..+.+.....+...++.++++++.||+|+|+.+.++.+..++......+...++.+.+++..++.|++.+...+...++
T Consensus       264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am  343 (444)
T PRK09669        264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM  343 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556667777888899999999999999999887766654433322222466777888889999999999999999


Q ss_pred             hhhccCCC-------chhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615         120 VAHWIPPT-------ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW  159 (211)
Q Consensus       120 ~~~~~~~~-------~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw  159 (211)
                      ++|..+.+       ..|...+ ......+|..+++.+++.+.+..|+
T Consensus       344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99988622       2344556 5577889999999999998877665

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.04  E-value=4e-09  Score=84.76  Aligned_cols=122  Identities=9%  Similarity=-0.037  Sum_probs=85.1

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh--hcccHHHHHHHHHHHHh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA--AYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~G~  107 (211)
                      ...+++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+..+..+..+.....  ...+.+...+...+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3456689999999999999999999999999999999999999988877654433322211  11234444444444454


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhh
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGV  152 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~  152 (211)
                      +.+.........+.|..| ++++++.+ .. ....+|..+++.+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~  345 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA  345 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455555556667777766 78999998 44 4456777777766543

>TIGR00788 fbt folate/biopterin transporter

Probab=99.02  E-value=2.6e-09  Score=88.60  Aligned_cols=126  Identities=16%  Similarity=0.075  Sum_probs=107.2

Q ss_pred             ccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--------cccHHHHHHHHHH
Q psy3615          33 SLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--------YWDYKAMAGLRIV  104 (211)
Q Consensus        33 ~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~l  104 (211)
                      +.+|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+...+..        .++.+......++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            56899999999999999999999999999999999999999999999888775532110        0223345566778


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG  158 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g  158 (211)
                      .+++.+..+.....++++..|++++++..+ .....++|..+++.+++.+.++.|
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888888888899999999999999999999 778889999999999999988776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.02  E-value=8.8e-09  Score=85.60  Aligned_cols=122  Identities=19%  Similarity=0.108  Sum_probs=93.0

Q ss_pred             CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhcccHHHHHHHHHHHHhhhhcchH
Q psy3615          38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAYWDYKAMAGLRIVQGVIGGLAWP  114 (211)
Q Consensus        38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~  114 (211)
                      +....+.+.+...++..++.++++++.||+|+|+.+.++..+..++.+...+   ...++.+.+++..++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            5556677777777888999999999999999999999888776665544432   1124566677777888999998888


Q ss_pred             HHHHHhhhccC-------CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615         115 SMHHLVAHWIP-------PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW  159 (211)
Q Consensus       115 ~~~~~~~~~~~-------~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw  159 (211)
                      ...++++|..+       +++.|...+ ......+|..+++.+.+++.+..|+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88999999865       223344666 5588889999999999988776554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.99  E-value=2e-09  Score=85.34  Aligned_cols=119  Identities=14%  Similarity=0.150  Sum_probs=101.2

Q ss_pred             CCCcccccCC-chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-ccHHHHHHHHHHHH
Q psy3615          29 GDSGSLFHWD-SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-WDYKAMAGLRIVQG  106 (211)
Q Consensus        29 ~~i~~~~~~s-~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~G  106 (211)
                      .++.+++|.+ ..+.+.+.+...+...++.++.|++.||+++|+..........+..+...+... ++....+...++.|
T Consensus       231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  310 (352)
T PF07690_consen  231 LYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIG  310 (352)
T ss_dssp             HHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHH
T ss_pred             hhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3458889999 789999999999999999999999999999988888777777776665554421 34566777888899


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhh
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSY  147 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~  147 (211)
                      ++.+...+....++.+..|+++|+++.+ .....++|..++|
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  311 FGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999 8899999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.99  E-value=1.2e-09  Score=87.31  Aligned_cols=111  Identities=12%  Similarity=-0.047  Sum_probs=88.3

Q ss_pred             cCCCcccccCCchhhHHHHHHHH-HHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-c--------ccHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFF-WLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-Y--------WDYKA   97 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~-~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~--------~~~~~   97 (211)
                      ++++. ++|++.++.+.+..... ++..++.+++|++.||+|+|+.+.++.++.++...+..+.. .        ++.+.
T Consensus       233 ~~~l~-~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (356)
T TIGR00901       233 TLFLL-DMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLM  311 (356)
T ss_pred             HHHHH-HcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHH
Confidence            34334 48999999998887766 57789999999999999999999888888777665444321 1        23566


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcc
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGS  139 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~  139 (211)
                      +....++.+++.+...+...+++.|.+|+++||+.++ .+...
T Consensus       312 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       312 LFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            7777888899999999999999999999999999999 55443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.98  E-value=4.7e-09  Score=85.23  Aligned_cols=160  Identities=14%  Similarity=0.091  Sum_probs=106.0

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-CcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-TKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      .++..+..+..-++.|+|..|+|.+.+...+...++++++|+++||.+ +|+.+.+..++.++..+.....  ++++.+.
T Consensus        18 ~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--~~f~~~~   95 (400)
T PF03825_consen   18 YGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--SSFWWLF   95 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence            333434444455678899999999999999999999999999999986 5777767666666665555555  6788888


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhh-hhhhhcccC---chHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPL-CGVVIDTLG---WEAAFYVTGALGVVWW  174 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~-~~~l~~~~g---w~~~~~~~~~~~~~~~  174 (211)
                      +..++..+......|...++..+...+  ++.-.| .-...++|..++... ...+....+   ....+++.+...++..
T Consensus        96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~  173 (400)
T PF03825_consen   96 VIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA  173 (400)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH
Confidence            888888888888888888888888763  344445 445566666555333 222332222   2334555554444333


Q ss_pred             HHHHhhhcCCC
Q psy3615         175 VVWMIVVYDTP  185 (211)
Q Consensus       175 ~~~~~~~~~~~  185 (211)
                      ... +.+|+.|
T Consensus       174 ~~~-l~lp~~~  183 (400)
T PF03825_consen  174 GFA-LFLPKTP  183 (400)
T ss_pred             HHH-HhCCCCc
Confidence            332 3356655

>KOG0253|consensus

Probab=98.97  E-value=1.2e-09  Score=85.65  Aligned_cols=128  Identities=16%  Similarity=0.107  Sum_probs=95.6

Q ss_pred             HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCc
Q psy3615          49 FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTE  128 (211)
Q Consensus        49 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~  128 (211)
                      ..+.-+.+.++.+++.||+|||+++....+++++..++....  .+.....+.-+..-+..+..+.+.+.+..|.+|...
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c--~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTav  467 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC--KTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAV  467 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh--cCcchhHHHHHHHHHHHhchheEEEEecCcccchhh
Confidence            455667888999999999999999999999999988877655  332233333333334444455667889999999999


Q ss_pred             hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         129 RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       129 r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      |+.+.| -.....+|+++.|.++  +....+-..+..+++.+.++..+..+++
T Consensus       468 RatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcff  518 (528)
T KOG0253|consen  468 RATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFF  518 (528)
T ss_pred             hhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheee
Confidence            999999 7799999999999998  3332344456677777777777766653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.96  E-value=1.2e-08  Score=87.39  Aligned_cols=155  Identities=15%  Similarity=0.107  Sum_probs=122.0

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcc------cHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYW------DYKA   97 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~------~~~~   97 (211)
                      ..+..++.+.+|++......+...+....-+...++|+++|+ +|+++.++++.++..++..+..+...+      ....
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            334445566789999999888888888889999999999995 799999999999999988877654211      1223


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCc---hhhHhh-hhhcchhhhhhhhhhhhhhhcc-------cCchHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTE---RSQFIT-SYLGSSFGVALSYPLCGVVIDT-------LGWEAAFYVT  166 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~---r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------~gw~~~~~~~  166 (211)
                      .+++-.+..+|.|..-++..+...|-+++++   |.+... ++...++|..+++++..++.+.       .+|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            5566777788899999999999999987643   566677 7789999999999999888744       3699999998


Q ss_pred             HHHHHHHHHHHHh
Q psy3615         167 GALGVVWWVVWMI  179 (211)
Q Consensus       167 ~~~~~~~~~~~~~  179 (211)
                      ++..++..++...
T Consensus       168 ~i~m~ia~lvf~~  180 (654)
T TIGR00926       168 AILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888777665544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.93  E-value=1.1e-08  Score=78.66  Aligned_cols=144  Identities=28%  Similarity=0.413  Sum_probs=110.4

Q ss_pred             CCCcccccCCc--hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHH
Q psy3615          29 GDSGSLFHWDS--NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQG  106 (211)
Q Consensus        29 ~~i~~~~~~s~--~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G  106 (211)
                      +.+..+++.+.  ...++..+.+.++..++.++.|.+.||+|||+.+..+.....++.+...+...++.+.+++.|++.|
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  105 (338)
T COG0477          26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQG  105 (338)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            33444455444  4789999999999999999999999999999888888776555555555551124788899999999


Q ss_pred             hhhhcchHHHHHHhhhccCC-CchhhHhh-hhh-cchhhhhhhhhhhhhhhcc--cCchHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYL-GSSFGVALSYPLCGVVIDT--LGWEAAFYVTGALGVV  172 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~-~~~~g~~~~~~~~~~l~~~--~gw~~~~~~~~~~~~~  172 (211)
                      ++.+...+....++.++.|+ ++|+...+ ... ...+|..+++.+++.+...  .+|+..|.........
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         106 LGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999999999999997 67888888 665 5778888888777766654  5788866666555433

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.91  E-value=7.9e-10  Score=89.02  Aligned_cols=156  Identities=12%  Similarity=0.060  Sum_probs=92.1

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH--HHHHh-hhh--hcccH-HHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL--ISFAL-PAA--AYWDY-KAMA   99 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i--~~~~~-~~~--~~~~~-~~~~   99 (211)
                      ..+..+.++.|+|.+++|.+.++..+...+.+++.|.++||+|.||-+++......+  +.+.. .+.  ...|. ...+
T Consensus        29 F~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~i  108 (412)
T PF01306_consen   29 FFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAI  108 (412)
T ss_dssp             HHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHH
T ss_pred             HHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556677899999999999999999999999999999999987776654433322  21111 111  01222 2223


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      ++.+..|+......+..-+++.+..  ++.+.-.| .-...++|.+++..++|.+.+. +-+..||+.....++..++.+
T Consensus       109 ig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~  185 (412)
T PF01306_consen  109 IGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLL  185 (412)
T ss_dssp             HTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHH
Confidence            3333344444445555555555543  23344445 4577888999999999998873 445677766555555544444


Q ss_pred             hhhcCC
Q psy3615         179 IVVYDT  184 (211)
Q Consensus       179 ~~~~~~  184 (211)
                      +..|+.
T Consensus       186 ~~~~~~  191 (412)
T PF01306_consen  186 LLKPDV  191 (412)
T ss_dssp             SS---S
T ss_pred             HcCCcC
Confidence            444443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.90  E-value=2e-08  Score=80.81  Aligned_cols=144  Identities=9%  Similarity=-0.019  Sum_probs=93.8

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc---chhHH-HHHHHHHHHHHhhhhhcccHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK---VVFGV-SNLAMFLISFALPAAAYWDYKAMAGL  101 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (211)
                      .+++.+ ++.|.+.. .+...++..+...++   .++++||..||   +.... ...+.++........  .+....++.
T Consensus       214 wlp~~L-~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~  286 (368)
T TIGR00903       214 WLEAAL-RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFE--LNRLALFAF  286 (368)
T ss_pred             HHHHHH-HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHH
Confidence            344545 44566654 455555555544444   47788877543   33232 333333333333333  334444455


Q ss_pred             HHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         102 RIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       102 ~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      -.+.+++....++...++.+|.+|++.|++++| .+...++|...+|++.+.+..  +.+..|.+.+...++..+...
T Consensus       287 ~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       287 IGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            566677677777778899999999999999999 889999999999999887774  667778877777766665543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11462 putative transporter; Provisional

Probab=98.89  E-value=1.6e-08  Score=83.83  Aligned_cols=160  Identities=12%  Similarity=0.026  Sum_probs=113.6

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcchh-HHHHHHHHHHHHHhhhhhccc----H
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKVVF-GVSNLAMFLISFALPAAAYWD----Y   95 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~~~-~~~~~~~~i~~~~~~~~~~~~----~   95 (211)
                      .++..++.+..|+++...|.+..+.-+..++..|+.|.++||    +||||.. +++.+..++..+++......+    .
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~  109 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKM  109 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            345566778899999999999999999999999999999996    6876554 567677777766654432111    3


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-------cCchHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-------LGWEAAFYVT  166 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-------~gw~~~~~~~  166 (211)
                      ..+.+..++..++.........++..|..+ +++|.+..+ ...+..+|..+++.+...+.+.       .+|+....+.
T Consensus       110 ~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        110 IYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            445566677788888877888888888876 678999999 6677777776666665443332       2567666666


Q ss_pred             HHHHHHHHHHHHhhhcCC
Q psy3615         167 GALGVVWWVVWMIVVYDT  184 (211)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~  184 (211)
                      +++.+++..+.+...+|.
T Consensus       190 ~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        190 SVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHhcceec
Confidence            666655555544444444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.84  E-value=8.2e-08  Score=79.90  Aligned_cols=141  Identities=13%  Similarity=-0.011  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCC-----cchh--HHHHHHHHHHHHHhhhh-------hcccHHHHHHHHHHHHh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGT-----KVVF--GVSNLAMFLISFALPAA-------AYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~-----r~~~--~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~l~G~  107 (211)
                      .+++.+...+...+.+++..++..|.+|     +...  .+|.++.+++.....+.       ...++++++...++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            5688888888888888876654444443     3433  67788887777666531       12578899999999999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY  182 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      |+....|...+++.+..|++.||+.++ ......+|..+++.+.....+..+|.+.|...+...++..++.++..|
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 779999999999888887777678888888888777776666555443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.84  E-value=6.6e-08  Score=75.83  Aligned_cols=148  Identities=14%  Similarity=0.040  Sum_probs=115.7

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHh
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      |.+-.|-|+|..+.|+..+...+......+....+.+|. ++|+......+++.++.+.+.+...++++..   -++.|+
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~  308 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGL  308 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhC
Confidence            446678899999999999999999999999999999965 5777777788888888877777633332222   489999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh--hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHHHHHHh
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT--SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~~~~~~  179 (211)
                      +.|..++....++.+..+..+.....+  .+....+=..+||.+.|++.|..| |+..++......+...+..+.
T Consensus       309 G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         309 GQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             ccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999998877655554444  556666667889999999999865 888887777766666555544

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.82  E-value=3.9e-08  Score=80.72  Aligned_cols=125  Identities=16%  Similarity=0.137  Sum_probs=104.7

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcch
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAW  113 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~  113 (211)
                      .+|.+ +..+.+.....++..++.+++++++||+|+|+++..+.++.+++.++..+...++.+.+++..++.|++.+..+
T Consensus       255 vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~  333 (428)
T PF13347_consen  255 VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFF  333 (428)
T ss_pred             HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccc
Confidence            34433 56788888899999999999999999999999999999999999888877732478999999999999999999


Q ss_pred             HHHHHHhhhccCC-------CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615         114 PSMHHLVAHWIPP-------TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW  159 (211)
Q Consensus       114 ~~~~~~~~~~~~~-------~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw  159 (211)
                      +...++++|..+.       ++.|...+ ......++..+++.+.+.+.+..|+
T Consensus       334 ~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  334 VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence            9999999998873       33577777 6688889999999988888765443

>PRK11462 putative transporter; Provisional

Probab=98.81  E-value=1e-07  Score=78.95  Aligned_cols=121  Identities=17%  Similarity=0.114  Sum_probs=79.8

Q ss_pred             chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615          39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH  118 (211)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  118 (211)
                      ++..+.+.+.+.++.+++.++++++.||+|+|+++..+..+.++..++..+....+.+.+++.-++.|++.+...+...+
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677788888899999999999999999987765554444333332321222333444556677777766666677


Q ss_pred             HhhhccCC-----Cch--hhHhh-hhhcchhhhhhhhhhhhhhhcccCc
Q psy3615         119 LVAHWIPP-----TER--SQFIT-SYLGSSFGVALSYPLCGVVIDTLGW  159 (211)
Q Consensus       119 ~~~~~~~~-----~~r--~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw  159 (211)
                      ++.|..+-     .+|  |...+ ......+|..+++.+.+.+.+..|+
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77777652     233  44445 4577888888888888887765444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.81  E-value=2.6e-08  Score=81.30  Aligned_cols=162  Identities=14%  Similarity=0.080  Sum_probs=122.7

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCC-cchhHHHHHHHHHHHHHhhhhhc----ccH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGT-KVVFGVSNLAMFLISFALPAAAY----WDY   95 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~-r~~~~~~~~~~~i~~~~~~~~~~----~~~   95 (211)
                      .++.-+..+..|+++...|.+..+.-+..++..|+.|.+.||    +|| |+-++++.+-+++...++....+    .+.
T Consensus        33 ~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~  112 (467)
T COG2211          33 LYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKL  112 (467)
T ss_pred             HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcch
Confidence            344556688899999999999999999999999999999995    676 45566777888888887776632    235


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccC-CCchhhHhh-hhhcchhhhhhhhhhhhhhhc-------ccCchHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIP-PTERSQFIT-SYLGSSFGVALSYPLCGVVID-------TLGWEAAFYVT  166 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~-~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-------~~gw~~~~~~~  166 (211)
                      ....+...+.+++.........++..+..+ ++||.+..+ -..+..+|..+...+...+..       ..||+..-++.
T Consensus       113 ~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~  192 (467)
T COG2211         113 IYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVL  192 (467)
T ss_pred             HHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHH
Confidence            566778899999999988888888888875 468998888 667777775555444444332       24788888888


Q ss_pred             HHHHHHHHHHHHhhhcCCCC
Q psy3615         167 GALGVVWWVVWMIVVYDTPD  186 (211)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~  186 (211)
                      +++..+..+++++..+|...
T Consensus       193 ~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         193 GVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             HHHHHHHHHHHHHHhhcccC
Confidence            88887777777776666544

>KOG2816|consensus

Probab=98.80  E-value=5.6e-08  Score=80.02  Aligned_cols=133  Identities=19%  Similarity=0.186  Sum_probs=109.8

Q ss_pred             HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh--hhcchHHHHHHhhhccC
Q psy3615          48 SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI--GGLAWPSMHHLVAHWIP  125 (211)
Q Consensus        48 ~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~--~g~~~~~~~~~~~~~~~  125 (211)
                      ...+...+.+++.|.++||+|||..+.+..+...+..+...+.   .+|.++    +.++.  .+.......+++++...
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~---~~~~~~----~~~l~g~~~~~~s~~~a~vadis~  142 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ---GYWFFL----LLGLSGGFSAIFSVGFAYVADISS  142 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH---HHHHhh----hcccccchhhhhhhhhhheeeccc
Confidence            3467788999999999999999999999988888877776554   344443    44442  24467788899999999


Q ss_pred             CCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615         126 PTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       126 ~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      .++|....+ .......+..++|.+++.+.+..|.-..|.+..+..++..+...+..||+..+
T Consensus       143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~  205 (463)
T KOG2816|consen  143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQE  205 (463)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCc
Confidence            999999999 88889999999999999999999999999999999888888888888876443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.80  E-value=4.3e-08  Score=82.08  Aligned_cols=138  Identities=10%  Similarity=-0.026  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHHHhhchhh----HHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-------ccHHHHHHHHHHHHhhhh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGG----VLARSLGTKVVFGVSNLAMFLISFALPAAAY-------WDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g----~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~l~G~~~g  110 (211)
                      .+++.++..+...+..++.+    ++.||++.++.+.+|.++.+++.+.......       -+.++++...++.|+++.
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            56666777766667766664    4445555557788888998888877665521       124678889999999999


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc----------ccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID----------TLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ...|...+++.+..|++.||+.+| ++....+|..++..+.+....          ..+..+.|...+...++..++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 777767777666655542210          113567777777666554444443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.79  E-value=7.4e-10  Score=92.91  Aligned_cols=159  Identities=14%  Similarity=0.111  Sum_probs=3.0

Q ss_pred             ccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc----------
Q psy3615          23 VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY----------   92 (211)
Q Consensus        23 ~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~----------   92 (211)
                      ......+.+++.|+++..+.|++.+.+-++..+..++..++.+|..|-|.+-+|.++.+++.+++++.+.          
T Consensus        21 ~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~  100 (539)
T PF03137_consen   21 YVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEA  100 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccc
Confidence            3444566789999999999999999999999999999999999988888888999999999888775210          


Q ss_pred             c--------------------------------------cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh
Q psy3615          93 W--------------------------------------DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT  134 (211)
Q Consensus        93 ~--------------------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~  134 (211)
                      .                                      -+..++++.++.|+|....++...+++-|..++++-+...|
T Consensus       101 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiG  180 (539)
T PF03137_consen  101 SNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIG  180 (539)
T ss_dssp             ---------------------------------------------------SSS--------------------------
T ss_pred             cccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchh
Confidence            0                                      03557788999999999999999999999999999999999


Q ss_pred             -hhhcchhhhhhhhhhhhhhhcc---------------------cC-chHHHHHHHHHHHHHHHHHHhhh
Q psy3615         135 -SYLGSSFGVALSYPLCGVVIDT---------------------LG-WEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       135 -~~~~~~~g~~~~~~~~~~l~~~---------------------~g-w~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                       .+....+|.++|..+++.+.+.                     .| |+..|++.+.+.++..+..+.+-
T Consensus       181 i~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FP  250 (539)
T PF03137_consen  181 ILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFP  250 (539)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             hhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             8899999999999888876532                     12 66667777777766666555433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.78  E-value=1.5e-07  Score=76.96  Aligned_cols=126  Identities=11%  Similarity=0.070  Sum_probs=95.0

Q ss_pred             CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHH
Q psy3615          37 WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM  116 (211)
Q Consensus        37 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  116 (211)
                      .+....+...+.+..+..++.++++++.||+++|+++.+......+..++..+.  ++... ....++.|++.+..+|..
T Consensus       266 ~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~--~~~~~-~~~l~~~glf~s~~fp~i  342 (410)
T TIGR00885       266 MTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA--GGHVG-LYCLTLCSAFMSLMFPTI  342 (410)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc--CChHH-HHHHHHHHHHHHHHHHHH
Confidence            333444555666677889999999999999999999988888888887777665  44333 566778888888899999


Q ss_pred             HHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhccc------CchHHHHHH
Q psy3615         117 HHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTL------GWEAAFYVT  166 (211)
Q Consensus       117 ~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~------gw~~~~~~~  166 (211)
                      .++..+..+++.+.......+ ..+|..+.|++.|++.|+.      +.+..|++.
T Consensus       343 ~sl~~~~~g~~~~~~s~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       343 YGIALKGLGQDTKYGAAGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             HHHHHhhhhhhhhhhHHHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence            999999998665433333222 3399999999999999954      467777764

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2563|consensus

Probab=98.78  E-value=8e-08  Score=77.26  Aligned_cols=153  Identities=12%  Similarity=0.208  Sum_probs=114.2

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc----cHH--HHHHHHHHH
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW----DYK--AMAGLRIVQ  105 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~----~~~--~~~~~~~l~  105 (211)
                      ...|+ +.+..-|...+|++.+....+.+-|+.|++|-|..++++.+..+++..+-..+..+    .++  ....+..+.
T Consensus        72 ~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~ia  150 (480)
T KOG2563|consen   72 NSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIA  150 (480)
T ss_pred             HHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHH
Confidence            44456 66677899999999999999999999999999999999999999999887665433    344  566778888


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc------CchH--HHHHHHHHHHHHHHH
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL------GWEA--AFYVTGALGVVWWVV  176 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~------gw~~--~~~~~~~~~~~~~~~  176 (211)
                      +.++-........+..-||++++|..+.. -.++..+|.+++.++...+..+.      .|..  .|+...++..+.+.+
T Consensus       151 a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l  230 (480)
T KOG2563|consen  151 AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLAL  230 (480)
T ss_pred             HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            88877776666788899999999999999 66888888888888877776543      3433  344444444443344


Q ss_pred             HHhhhcCCC
Q psy3615         177 WMIVVYDTP  185 (211)
Q Consensus       177 ~~~~~~~~~  185 (211)
                      ..+..++.|
T Consensus       231 ~~~~~~~~P  239 (480)
T KOG2563|consen  231 VLFVFTKKP  239 (480)
T ss_pred             HHHhcCCCC
Confidence            444444433

>PRK09848 glucuronide transporter; Provisional

Probab=98.77  E-value=5e-08  Score=80.52  Aligned_cols=128  Identities=8%  Similarity=-0.067  Sum_probs=85.5

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh----CCcchh-HHHHHHHHHHHHHhhhhh---cc--c
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL----GTKVVF-GVSNLAMFLISFALPAAA---YW--D   94 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----G~r~~~-~~~~~~~~i~~~~~~~~~---~~--~   94 (211)
                      .++..++++.+|++..+.|.+.+...+..++..++.|+++||.    |||+.. .++.+...+...+.....   .+  .
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSK  108 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchH
Confidence            4455678888999999999999999999999999999999996    666654 555554544443322111   01  1


Q ss_pred             HHHHHHHHHHHHhhhhcchHHHHHHhhhccCC-CchhhHhh-hhh-----cchhhhhhhhhhhhh
Q psy3615          95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP-TERSQFIT-SYL-----GSSFGVALSYPLCGV  152 (211)
Q Consensus        95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~r~~~~~-~~~-----~~~~g~~~~~~~~~~  152 (211)
                      .+......++.+++.+...+...++..+..++ ++|.+..+ -..     ...++..++|.+...
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            23344455677888888777777777766544 57887765 322     233555666666554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.74  E-value=2.1e-07  Score=75.42  Aligned_cols=127  Identities=9%  Similarity=-0.094  Sum_probs=91.9

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHH-HHhhhhhcccHHHHHHHHHHHHhh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLIS-FALPAAAYWDYKAMAGLRIVQGVI  108 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~l~G~~  108 (211)
                      .+++.+|.+..+.++......++..++..+.+++.||++++..........+... .........+.+.+....++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            3345588899999999988899999999999999999983332222222222111 111111113456677778889999


Q ss_pred             hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc
Q psy3615         109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL  157 (211)
Q Consensus       109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~  157 (211)
                      .+...+...++..+.+| +++++..+ ......+|..+++.+++.+.+..
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~  361 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQTG  361 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            99999999999999887 57899988 77888999999999988876643

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.70  E-value=1.9e-07  Score=77.90  Aligned_cols=138  Identities=11%  Similarity=-0.065  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCcch-------hHHHHHHHHHHHHHhh-----hhh---cccHHHHHHHHHHHH
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVV-------FGVSNLAMFLISFALP-----AAA---YWDYKAMAGLRIVQG  106 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~-------~~~~~~~~~i~~~~~~-----~~~---~~~~~~~~~~~~l~G  106 (211)
                      ..++.+...+...+..++.+++.||+++|+.       +.+|.++.+++.+...     ...   ..+.+.++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3556666667788889999999999999974       6777777776654321     111   134677788899999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc----------ccCchHHHHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID----------TLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~----------~~gw~~~~~~~~~~~~~~~~  175 (211)
                      +|++...+...+.+.+..|++.++.+++ ++....+|..++..++.....          ...+.+.|...+...++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 888888999988887765421          01245666666666665555


Q ss_pred             HHHh
Q psy3615         176 VWMI  179 (211)
Q Consensus       176 ~~~~  179 (211)
                      +.+.
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            5444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.69  E-value=4e-08  Score=78.52  Aligned_cols=115  Identities=14%  Similarity=-0.013  Sum_probs=84.1

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMAGLRIV  104 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~l  104 (211)
                      .+.++++.+|.++.+.+.+.+...+...++.++.|++.||+|+|+.+..+......+..+..+...+  +.+.......+
T Consensus       248 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (366)
T TIGR00886       248 FAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVA  327 (366)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence            3445567789999999999999999999999999999999999988887777666655554433222  45555555555


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhh
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFG  142 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g  142 (211)
                      .++..|.........+.+..| +++|+.+| .....++|
T Consensus       328 ~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       328 LFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            555556556667777788877 68999999 66666655

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.67  E-value=4.2e-07  Score=72.62  Aligned_cols=132  Identities=14%  Similarity=0.010  Sum_probs=98.8

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-----CcchhHH-HHHHHHHHHHHhhhh----hc-------c
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-----TKVVFGV-SNLAMFLISFALPAA----AY-------W   93 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~-~~~~~~i~~~~~~~~----~~-------~   93 (211)
                      +..|+++.....+...+...+... .++..|+.+|+.+     ||..+++ |.+....+..+.+++    ..       +
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            456888888888888888777654 6899999999988     7766654 455544444444332    11       1


Q ss_pred             c-HH--HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHH
Q psy3615          94 D-YK--AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAF  163 (211)
Q Consensus        94 ~-~~--~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~  163 (211)
                      . .+  .......+.|+|.+....+..++++|..|+++|+++.+ .+..--+|..++..+.+.+.+.+.-....
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~  158 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI  158 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence            1 12  23455677899999999999999999999999999999 88888899999999999888876643333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.67  E-value=3e-10  Score=93.50  Aligned_cols=161  Identities=14%  Similarity=0.010  Sum_probs=107.1

Q ss_pred             cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhh--h-hhccc----HH
Q psy3615          24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALP--A-AAYWD----YK   96 (211)
Q Consensus        24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~--~-~~~~~----~~   96 (211)
                      .....+.+.+..+.+..  -.......+...++.+....+.||+|||++++.+....+++.+.+.  . ...++    -.
T Consensus       272 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (451)
T PF00083_consen  272 IFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI  349 (451)
T ss_pred             ccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33445566666776665  2223344455566777778999999999999999988888776664  1 11111    11


Q ss_pred             HHHHHHHHHHhhhh-cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615          97 AMAGLRIVQGVIGG-LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus        97 ~~~~~~~l~G~~~g-~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      ..++.-.+.....+ ...+....+..|.+|.+.|.++.+ .+....++..+++.+...+.+..+-...+.+.+.++++..
T Consensus       350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~  429 (451)
T PF00083_consen  350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI  429 (451)
T ss_pred             ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence            11222222222222 234566688899999999999999 7788889989888888888776663456667677777777


Q ss_pred             HHHHhhhcCCCC
Q psy3615         175 VVWMIVVYDTPD  186 (211)
Q Consensus       175 ~~~~~~~~~~~~  186 (211)
                      ++.+++.||+..
T Consensus       430 i~~~~~lpET~g  441 (451)
T PF00083_consen  430 IFVYFFLPETKG  441 (451)
T ss_pred             hheeEEEeeCCC
Confidence            777777888753

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3764|consensus

Probab=98.67  E-value=4.1e-08  Score=77.82  Aligned_cols=147  Identities=14%  Similarity=0.026  Sum_probs=115.4

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI  108 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~  108 (211)
                      +.+.+..+..+.|...--..+.++++..+.|.+.||++  |-.....+.+..++......+.  +++..+++-++..+++
T Consensus       297 m~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~--~~~~~L~vp~~~l~~~  374 (464)
T KOG3764|consen  297 MLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA--TSIAQLWVPNFGLGFG  374 (464)
T ss_pred             HHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh--hhHHHHhhhhHHHHHH
Confidence            45666756668898888899999999999999999999  5444445566666666666667  8889999999999988


Q ss_pred             hhcchHHHHHHhhhccCCCc------hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         109 GGLAWPSMHHLVAHWIPPTE------RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       109 ~g~~~~~~~~~~~~~~~~~~------r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .+..............+.++      -|...+ ....+++|.++||.++|.+.+..|++|.-.+.+...++-.-+..+
T Consensus       375 i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  375 IGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            88877777777676665432      345666 558899999999999999999999999999988888876655443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.64  E-value=1.2e-06  Score=70.08  Aligned_cols=150  Identities=15%  Similarity=0.059  Sum_probs=122.0

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH-HhCCcchhHHHHHHHHHHHHHhhhhh-cccHHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR-SLGTKVVFGVSNLAMFLISFALPAAA-YWDYKAMAGLRIV  104 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~l  104 (211)
                      +.|+=.+.+|++..+...++.....+..++....|++.. |.++++...+++....++..+..++. ..+.+.+...-++
T Consensus       231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            456667789999999999999999999999999999887 67888888888888877766544432 2467888999999


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc----------cCchHHHHHHHHHHHHH
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT----------LGWEAAFYVTGALGVVW  173 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~----------~gw~~~~~~~~~~~~~~  173 (211)
                      .|++.|.......+.+.+...+++.|..+| +...+.++..++..+++.+.|.          .+|...|.+.+...++.
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a  390 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA  390 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 8899999999999998887653          23555666665555554


Q ss_pred             HHH
Q psy3615         174 WVV  176 (211)
Q Consensus       174 ~~~  176 (211)
                      ..+
T Consensus       391 ~~l  393 (403)
T PF03209_consen  391 LVL  393 (403)
T ss_pred             HHH
Confidence            444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.64  E-value=4e-07  Score=72.45  Aligned_cols=139  Identities=16%  Similarity=0.214  Sum_probs=113.0

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g  110 (211)
                      +.+..|+++.+.....+.+..+.+++...+.++..|+.+.|.+....++..+.++...+.  ++. .-+..-++.|+..+
T Consensus       263 ~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~--~g~-v~~~~l~~ig~F~s  339 (422)
T COG0738         263 LEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI--GGV-VALYALFLIGLFNS  339 (422)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh--cCh-HHHHHHHHHHHHhH
Confidence            344478899999999999999999999999999999999999998888877777777776  553 33456678899999


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHH
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWW  174 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~  174 (211)
                      ..+|...+...+..|  +.....+ ......+|+++-|++.|++.|+.|-...+.....+|.+..
T Consensus       340 imfPTIfslal~~l~--~~ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         340 IMFPTIFSLALKNLG--EHTSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHHHhccC--ccccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            999999999999998  3444455 6678888999999999999999998877774444444443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.63  E-value=1.9e-07  Score=76.74  Aligned_cols=156  Identities=14%  Similarity=0.058  Sum_probs=116.3

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC-----CcchhHHHHHHHHHHHHHhhhhhc--ccHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG-----TKVVFGVSNLAMFLISFALPAAAY--WDYKAMA   99 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G-----~r~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~   99 (211)
                      ..+.+++++|+++++.....+...+-. ...++.|.++|-+.     ||+.++++.++..++.........  .+.....
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~   90 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAV   90 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHH
Confidence            345678899999999888777666554 34678999999763     556666677666555554444321  2455566


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      +.-++..++........-+++.|...++  .||...+ .+....+|..++..+.|.+.+..+++..|.+.+.+..+..+.
T Consensus        91 ~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen   91 VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            6677778888888888888999887433  4677777 778889999999999999999999999999988887777666


Q ss_pred             HHhhhcC
Q psy3615         177 WMIVVYD  183 (211)
Q Consensus       177 ~~~~~~~  183 (211)
                      .++..+|
T Consensus       171 ~~~~~~e  177 (433)
T PF03092_consen  171 ALFLLEE  177 (433)
T ss_pred             HHHhhhh
Confidence            6665554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.63  E-value=6.1e-07  Score=63.07  Aligned_cols=114  Identities=7%  Similarity=0.004  Sum_probs=90.5

Q ss_pred             CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHH
Q psy3615          37 WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM  116 (211)
Q Consensus        37 ~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  116 (211)
                      +++..--.-.++......+++++.+.+.+++|.|+.++++.+.+.+-..... -  ++.+.++....+.|++.+..+.+.
T Consensus        34 i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~--~~~~~l~~~s~l~G~~~a~lW~aq  110 (156)
T PF05978_consen   34 ISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-Y--PNSYTLYPASALLGFGAALLWTAQ  110 (156)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h--hhHHHHHHHHHHHhhhhHHhhHhh
Confidence            3333334445666777788888899999999999999999999987655543 2  677889999999999999999999


Q ss_pred             HHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615         117 HHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV  153 (211)
Q Consensus       117 ~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l  153 (211)
                      ..++.+..++++|++..+ .......+..+|..+...+
T Consensus       111 g~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  111 GTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888 6666667767666555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2532|consensus

Probab=98.62  E-value=5.5e-08  Score=80.30  Aligned_cols=160  Identities=9%  Similarity=0.070  Sum_probs=109.9

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCc---------chhHHHHHHHHHHHHHhhhh
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTK---------VVFGVSNLAMFLISFALPAA   90 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r---------~~~~~~~~~~~i~~~~~~~~   90 (211)
                      ....+.+.+.++.+.+|.|..+.|+..++..+.+.+..+.+|+++||.-+|         ..-.++....++..+..++.
T Consensus       274 ~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~  353 (466)
T KOG2532|consen  274 FYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT  353 (466)
T ss_pred             HHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec
Confidence            334456778888999999999999999999999999999999999998653         22235555555555555555


Q ss_pred             hcccHHHHHHHHHHHHhhh-hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc---cCchHHHHH
Q psy3615          91 AYWDYKAMAGLRIVQGVIG-GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT---LGWEAAFYV  165 (211)
Q Consensus        91 ~~~~~~~~~~~~~l~G~~~-g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~---~gw~~~~~~  165 (211)
                      ...+.+. .+..+....+. |...+....-..+. .+++-+..++ .+....+...++|.+.+.+.+.   ..|+..|++
T Consensus       354 ~~~~~~~-a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i  431 (466)
T KOG2532|consen  354 SDEHRLL-AVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLI  431 (466)
T ss_pred             CCCcchH-HHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHH
Confidence            2212211 11222222222 22223233333333 4577899999 8899999999999999999842   369999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy3615         166 TGALGVVWWVVWMIVV  181 (211)
Q Consensus       166 ~~~~~~~~~~~~~~~~  181 (211)
                      .+++.++..++..++-
T Consensus       432 ~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  432 AAGILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHHHHhchheeEee
Confidence            9999888776655543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.62  E-value=3.9e-07  Score=74.57  Aligned_cols=127  Identities=18%  Similarity=0.065  Sum_probs=99.2

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhc
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGL  111 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~  111 (211)
                      +..+|-++.+..+.......+..++.+++.++.+|+|+|+++.++.++..++.++..+...++.+..++..++.+++.+.
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~  343 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI  343 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence            34455555666677777888888889999999999999999999999999999988887555788888899999999999


Q ss_pred             chHHHHHHhhhccCC-----Cch--hhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615         112 AWPSMHHLVAHWIPP-----TER--SQFIT-SYLGSSFGVALSYPLCGVVIDTLG  158 (211)
Q Consensus       112 ~~~~~~~~~~~~~~~-----~~r--~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g  158 (211)
                      ..+...++++|..+-     ++|  |...+ .....-+|..++..+.++.....|
T Consensus       344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999887642     223  44444 446667777888777777765543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.57  E-value=3.8e-06  Score=69.83  Aligned_cols=146  Identities=12%  Similarity=-0.006  Sum_probs=104.4

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHH-HHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHH
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMF-LISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL  119 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  119 (211)
                      ..++..++..+..++..++.|-++|+-|+||.++....+.+ +...++.+...++++...+..++.-++.+......+++
T Consensus        71 ~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~  150 (477)
T PF11700_consen   71 LWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAY  150 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999998777765555544 45555555422334444455555557888888889999


Q ss_pred             hhhccCCCch--------------------------hhHhh-hhhcchhhhhhhhhhhhhhhcc--------cCchHHHH
Q psy3615         120 VAHWIPPTER--------------------------SQFIT-SYLGSSFGVALSYPLCGVVIDT--------LGWEAAFY  164 (211)
Q Consensus       120 ~~~~~~~~~r--------------------------~~~~~-~~~~~~~g~~~~~~~~~~l~~~--------~gw~~~~~  164 (211)
                      +.+..+++++                          ++..+ -+....+|..+.-.+.-.+...        .+.|..+.
T Consensus       151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~  230 (477)
T PF11700_consen  151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFL  230 (477)
T ss_pred             hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHH
Confidence            9999998888                          88888 6677777777665554443221        23577888


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCC
Q psy3615         165 VTGALGVVWWVVWMIVVYDTPD  186 (211)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~  186 (211)
                      +.++.-++..+..++..||.|+
T Consensus       231 ~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  231 IVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC
Confidence            8888877777777777777765

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG4686|consensus

Probab=98.52  E-value=3.6e-09  Score=80.42  Aligned_cols=131  Identities=15%  Similarity=0.162  Sum_probs=109.0

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhh-hcccHHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAA-AYWDYKAMAGLRI  103 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~  103 (211)
                      .+..+.+.+.+++.++..++.+.|..-..+...++|++.|| +|-|..-++-++...++.+.++.. ..+.+|.+.++|+
T Consensus        65 alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF  144 (459)
T KOG4686|consen   65 ALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRF  144 (459)
T ss_pred             hhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhe
Confidence            34556677788888899999999999999999999999995 788877777777777776665532 1367999999999


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT  156 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~  156 (211)
                      +.|+|.-..-.+.+++...||..++.+.++| ......+|...--.+.+++.+.
T Consensus       145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHH
Confidence            9999988888889999999999999999999 6688899988887777777765

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.51  E-value=1.7e-06  Score=70.70  Aligned_cols=146  Identities=8%  Similarity=-0.147  Sum_probs=90.1

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh---hcccHHHHHHHHHHH
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA---AYWDYKAMAGLRIVQ  105 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~  105 (211)
                      ..+++.+|.++.+.++.......+..++..+.+.+.++..+++.+.....+..++..+....   ..++++..++..++.
T Consensus       243 ~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~  322 (413)
T PRK15403        243 VILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLY  322 (413)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence            34566779999999999888888888888888887655444444332222222222222111   113344456778888


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      ++|.+...+......-.- ....+|++.+ .......+...++...+++.++ +-+..|...+++..+....
T Consensus       323 ~~G~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~  392 (413)
T PRK15403        323 AFGIGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVF  392 (413)
T ss_pred             HHHHHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence            888888777776433221 2234788888 6666667778888888887665 5566666655554444333

>KOG0254|consensus

Probab=98.50  E-value=9.9e-07  Score=74.17  Aligned_cols=155  Identities=12%  Similarity=0.041  Sum_probs=94.1

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc---------c--HHH
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW---------D--YKA   97 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~---------~--~~~   97 (211)
                      +.+-+..+.+... .+...+..+...++..++..+.||+|||+.++.+...+.++.++++.....         .  ...
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            3344445544333 455556666777777788999999999999999999999988877654211         1  111


Q ss_pred             HHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhc-chhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHH
Q psy3615          98 MAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLG-SSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus        98 ~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~-~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~  175 (211)
                      +....+..........+....+.+|.+|.+.|+++.+ .... +.....+ ......+.+..++...|...+.++.+...
T Consensus       398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v-~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLI-SFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            2222222222222344555678899999999999998 4433 3333333 22222333333345667777777666666


Q ss_pred             -HHHhhhcCCC
Q psy3615         176 -VWMIVVYDTP  185 (211)
Q Consensus       176 -~~~~~~~~~~  185 (211)
                       ..++..||+.
T Consensus       477 ~fv~~~~pETk  487 (513)
T KOG0254|consen  477 IFVFFFVPETK  487 (513)
T ss_pred             HHheEEcccCC
Confidence             5666677764

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.50  E-value=1.3e-07  Score=59.07  Aligned_cols=77  Identities=8%  Similarity=-0.089  Sum_probs=68.7

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAM   98 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~   98 (211)
                      .|..++++.|.+++|.++|.++.+++.+...+|+.++.+...++.++..+++.+..+.+...+..+.+++.  ++.+.+
T Consensus         7 gRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~--~~~~~w   83 (85)
T PF06779_consen    7 GRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT--HSFWLW   83 (85)
T ss_pred             HHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--hchHHH
Confidence            45667788999999999999999999999999999999999999999888999999999999999999887  555443

Note that many members are hypothetical proteins.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.49  E-value=5.3e-07  Score=70.95  Aligned_cols=85  Identities=11%  Similarity=0.054  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc---------------
Q psy3615          93 WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT---------------  156 (211)
Q Consensus        93 ~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~---------------  156 (211)
                      ++++.+++..++.|.|.+...+..+.++++..+++++.+.++ ...++++|..++|.+++.+...               
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~   87 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE   87 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence            679999999999999999999999999999999999999999 8899999999999999987732               


Q ss_pred             -cCchHHHHHHHHHHHHHHHHH
Q psy3615         157 -LGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       157 -~gw~~~~~~~~~~~~~~~~~~  177 (211)
                       ..|+++|++.+.+..+..++.
T Consensus        88 ~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        88 AAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             368999987766655544433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.44  E-value=8.6e-06  Score=67.59  Aligned_cols=142  Identities=15%  Similarity=0.048  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHhhhhhc--cc-----------------HHHHHHHHH
Q psy3615          44 LVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFALPAAAY--WD-----------------YKAMAGLRI  103 (211)
Q Consensus        44 ~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~~~~~~--~~-----------------~~~~~~~~~  103 (211)
                      +....+.+...+.+++..++.+|+|+ |++..++.++.+++.....+...  ++                 .+..++...
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44555666666778888899999995 67768888888887776665421  01                 266778888


Q ss_pred             HHHhhhhcchHHHHHHhhhccCC--CchhhHhh-hhhcchhhhhhhhhhhhhhhcccC--chHHHHHHHHHHHHHHHHHH
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPP--TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG--WEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.|+..+..+..-++++++..++  ++.|..+| ++.+..+.+.+.....|.+.+..|  -..++.+.++..++..+..+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999995  45699999 889999998888877777555444  45677888888888888888


Q ss_pred             hhhcCCC
Q psy3615         179 IVVYDTP  185 (211)
Q Consensus       179 ~~~~~~~  185 (211)
                      +.+|+.+
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            8787654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3626|consensus

Probab=98.42  E-value=2.1e-07  Score=79.53  Aligned_cols=163  Identities=13%  Similarity=0.094  Sum_probs=133.4

Q ss_pred             cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-----------
Q psy3615          24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-----------   92 (211)
Q Consensus        24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-----------   92 (211)
                      +......+.+.++++..+.|++.+.+-++..+...+..+...|.-|-+.+-+|.++++++.+++++.+.           
T Consensus       116 ~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~  195 (735)
T KOG3626|consen  116 FNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEV  195 (735)
T ss_pred             hhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhh
Confidence            334556678999999999999999999999999999999999999999999999999999998876310           


Q ss_pred             -------c-----------------------------c--HH-HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHh
Q psy3615          93 -------W-----------------------------D--YK-AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFI  133 (211)
Q Consensus        93 -------~-----------------------------~--~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~  133 (211)
                             +                             +  ++ .+.++.++.|+|....++...+++-|...+++-...+
T Consensus       196 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYl  275 (735)
T KOG3626|consen  196 IKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYL  275 (735)
T ss_pred             hhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHH
Confidence                   0                             0  23 5677899999999999999999999999999999999


Q ss_pred             h-hhhcchhhhhhhhhhhhhhhcc------------------cC-chHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615         134 T-SYLGSSFGVALSYPLCGVVIDT------------------LG-WEAAFYVTGALGVVWWVVWMIVVYDTPD  186 (211)
Q Consensus       134 ~-~~~~~~~g~~~~~~~~~~l~~~------------------~g-w~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (211)
                      | .+....+|.++|..+++++.+.                  .| |+.-|++.+.+.++..+..+++-++.|+
T Consensus       276 gi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~  348 (735)
T KOG3626|consen  276 GILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPK  348 (735)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCcc
Confidence            9 8899999999999998887542                  12 6677788888887777766654444443

>KOG0255|consensus

Probab=98.34  E-value=1.7e-05  Score=66.85  Aligned_cols=141  Identities=11%  Similarity=-0.008  Sum_probs=99.9

Q ss_pred             HHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccH-HHHHHHHHHHHhhhhcchHHHHHHhhhccCC
Q psy3615          48 SFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDY-KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPP  126 (211)
Q Consensus        48 ~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~  126 (211)
                      .............+...|++|||.....+..+..++.++..+...... +...+...+...+.+..+.....+.+|.+|.
T Consensus       358 ~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt  437 (521)
T KOG0255|consen  358 LSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT  437 (521)
T ss_pred             HHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence            333344555556678999999999999999999999998887743333 2345555555566666667779999999999


Q ss_pred             CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy3615         127 TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTPDQHP  189 (211)
Q Consensus       127 ~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (211)
                      ..|..+.+ ......+|..++|.+...... ......+...+....+..++..+++||+.....
T Consensus       438 ~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  438 VVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence            99999999 889999999999988755544 222222223455666666666567888755443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.32  E-value=1.5e-05  Score=64.44  Aligned_cols=156  Identities=10%  Similarity=0.016  Sum_probs=113.8

Q ss_pred             cccCCCccc-ccCCchhhH-HHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Q psy3615          26 QQDGDSGSL-FHWDSNVQN-LVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        26 ~~~~~i~~~-~~~s~~~~~-~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      ++.|++.+. .|++.+|+. -+.-...=.+....++...+.|..+.|++++++.+...+...+..+.  ++...+-+..+
T Consensus        25 fl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~--~sv~~mq~~q~  102 (412)
T PF01770_consen   25 FLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG--TSVLAMQLMQF  102 (412)
T ss_pred             cchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--CcHHHHHHHHH
Confidence            334455554 788888764 44445555667778888999999999999999999988888887777  88999999999


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc--cCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT--LGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~--~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      ..|++.+. ..+..+++-...|+++--++.+ .-....+|..++..++..+...  .++....++......+..++. ++
T Consensus       103 ~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~-~f  180 (412)
T PF01770_consen  103 FYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIA-LF  180 (412)
T ss_pred             HHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HH
Confidence            99998775 5677788888888887777777 5577778888888888777653  345556555554444444444 34


Q ss_pred             hcCCC
Q psy3615         181 VYDTP  185 (211)
Q Consensus       181 ~~~~~  185 (211)
                      +|..+
T Consensus       181 LP~~~  185 (412)
T PF01770_consen  181 LPMPK  185 (412)
T ss_pred             cCCCC
Confidence            55543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0252|consensus

Probab=98.30  E-value=1.2e-07  Score=76.49  Aligned_cols=130  Identities=11%  Similarity=0.020  Sum_probs=96.9

Q ss_pred             HHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc--cHHHHH----HHHHHHHhhhhcchHHHHHHhhhccCC
Q psy3615          53 HWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW--DYKAMA----GLRIVQGVIGGLAWPSMHHLVAHWIPP  126 (211)
Q Consensus        53 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~----~~~~l~G~~~g~~~~~~~~~~~~~~~~  126 (211)
                      +..+-++...+.|++|||+..+.+.+++++..+..+...++  +-..+.    +..++.-+|-.   .....+.+|.+|.
T Consensus       361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FPa  437 (538)
T KOG0252|consen  361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPA  437 (538)
T ss_pred             cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchH
Confidence            34466778889999999999999999999988887766321  112222    22333333332   3345567899999


Q ss_pred             CchhhHhh-hhhcchhhhhhhhhhhhhhhc-----ccCchHHHHHHHHHHHHHHHHHHhhhcCCCC
Q psy3615         127 TERSQFIT-SYLGSSFGVALSYPLCGVVID-----TLGWEAAFYVTGALGVVWWVVWMIVVYDTPD  186 (211)
Q Consensus       127 ~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~-----~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (211)
                      +.|++..| .....-.|++++.....++.+     ..+.+..+++.+.+++...++.++ +||+..
T Consensus       438 rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l-~pEtk~  502 (538)
T KOG0252|consen  438 RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL-IPETKG  502 (538)
T ss_pred             HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE-eecccc
Confidence            99999999 668889999999999999988     678899999998888887777655 666543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.24  E-value=7.4e-06  Score=66.12  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=86.8

Q ss_pred             chhHHHHHHHHHHHHHhhhhhcc-------cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCC---chhhHhh-hhhcc
Q psy3615          71 VVFGVSNLAMFLISFALPAAAYW-------DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPT---ERSQFIT-SYLGS  139 (211)
Q Consensus        71 ~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~---~r~~~~~-~~~~~  139 (211)
                      |+++++.++..++.++..++..+       +.+.++++..+.++|.|..-|...++..|-++++   +|.+... +|.+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            56788888888888875544222       2357888889999999999999999999999876   4566777 78999


Q ss_pred             hhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         140 SFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       140 ~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ++|..+++.+.+++.++.||.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988887776665543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.17  E-value=2.6e-06  Score=52.54  Aligned_cols=57  Identities=14%  Similarity=0.056  Sum_probs=47.6

Q ss_pred             cccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHH
Q psy3615          24 LFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAM   80 (211)
Q Consensus        24 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~   80 (211)
                      +.|..+...++.|+|+.++|.+.++..+...++.+++|.++||+++++.++....++
T Consensus        19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            334444445679999999999999999999999999999999999999887765543

>KOG2533|consensus

Probab=98.15  E-value=2.7e-06  Score=70.79  Aligned_cols=140  Identities=14%  Similarity=0.002  Sum_probs=88.4

Q ss_pred             cCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcchhHHHHHHHHHHH-HHhhhhhcccHHHHHHHH
Q psy3615          28 DGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKVVFGVSNLAMFLIS-FALPAAAYWDYKAMAGLR  102 (211)
Q Consensus        28 ~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~  102 (211)
                      +-.+.+..|.|..+.+.+.+.+.++.+++.+..|+++||    +.+|........+..+.. ......  .+........
T Consensus       297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~  374 (495)
T KOG2533|consen  297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGAF  374 (495)
T ss_pred             HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHHH
Confidence            333444567899999999999999999999999999999    667776666666655544 333222  2233333333


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhh-hhhhhhhhhhhcccCchHHHHHHHHH
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGV-ALSYPLCGVVIDTLGWEAAFYVTGAL  169 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~-~~~~~~~~~l~~~~gw~~~~~~~~~~  169 (211)
                      +....+.....+......++...++.|..... .+ .+.+.+. ..++...+...++++|...|......
T Consensus       375 ~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~  444 (495)
T KOG2533|consen  375 LIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAA  444 (495)
T ss_pred             HhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHH
Confidence            34444555566777788888877665554444 33 4444444 44444445555657888888444333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.10  E-value=0.00015  Score=58.50  Aligned_cols=147  Identities=9%  Similarity=-0.085  Sum_probs=103.5

Q ss_pred             hhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH-HHHHhhhhhc-ccHHHHHHHHHHHHhhhhcchHHHH
Q psy3615          40 NVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL-ISFALPAAAY-WDYKAMAGLRIVQGVIGGLAWPSMH  117 (211)
Q Consensus        40 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i-~~~~~~~~~~-~~~~~~~~~~~l~G~~~g~~~~~~~  117 (211)
                      +..+...++..+..++.++..|.++|+.|+||...-.....++ ..+...+... +.++..++...+..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            3467778888999999999999999999987776655555444 4455555532 2344555667777888888888899


Q ss_pred             HHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhh--h-hh---------------cccCchHHHHHHHHHHHHHHHHHH
Q psy3615         118 HLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG--V-VI---------------DTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       118 ~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~--~-l~---------------~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +++.+..++++-++..+ -+....+|..+.-.+.-  . ..               +...-|.++.+.++..++..+-.+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            99999999988888877 66666676655433321  1 11               223467788888888888777776


Q ss_pred             hhhcCCCC
Q psy3615         179 IVVYDTPD  186 (211)
Q Consensus       179 ~~~~~~~~  186 (211)
                      +..++.++
T Consensus       218 ~~v~~~~~  225 (438)
T COG2270         218 LNVHDAEK  225 (438)
T ss_pred             hccccccc
Confidence            66666554

>KOG2816|consensus

Probab=97.95  E-value=0.00015  Score=60.12  Aligned_cols=123  Identities=18%  Similarity=0.212  Sum_probs=106.2

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhh-HHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGG-VLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVI  108 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~  108 (211)
                      +++..+++++.+.+...+.......+++.+.. .+...+|-|+++..|++...+..++.+++  ++.|+++....+.++.
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--~~~w~~~~~~v~~~~~  344 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--TETWMMFAAGVVVALA  344 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--ccchhhhHHHHHHHhh
Confidence            45667899999999998888888888888776 77888999999999999999999999888  8888888888777765


Q ss_pred             hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615         109 GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID  155 (211)
Q Consensus       109 ~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~  155 (211)
                       +...+...+.++.+.+++++|++.+ +.....+...++|.+-+.+..
T Consensus       345 -~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  345 -GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             -cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence             5578999999999999999999999 889899999999888776643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.92  E-value=0.00015  Score=61.68  Aligned_cols=111  Identities=12%  Similarity=0.030  Sum_probs=83.0

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHH
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHL  119 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~  119 (211)
                      +.++....+.++..++..+.|.+..++++ |+.++++.++..++.-+++....+|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            56788888899999999999999998876 55556777676665444433333455566777889999999888777777


Q ss_pred             hhhccCCCchhhHhh-hhhcchhhhhhhhhhhh
Q psy3615         120 VAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG  151 (211)
Q Consensus       120 ~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~  151 (211)
                      ..-..|.++-+.+.+ ......+|+.+|..+..
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            777788888899888 66777777777766643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.86  E-value=0.00022  Score=59.57  Aligned_cols=138  Identities=12%  Similarity=-0.041  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCC--cch-----hHHHHHHHHHHHHHhhhhh-------cccHHHHHHHHHHHHh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGT--KVV-----FGVSNLAMFLISFALPAAA-------YWDYKAMAGLRIVQGV  107 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~--r~~-----~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~l~G~  107 (211)
                      .+|..++..+...+..++.+++-.|..+  |..     +.+|+++.+++.+.+.+..       ..+.+++++..++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5677888888888888888888777633  211     5677777787766554321       1256778889999999


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhh-cchhhhhhhhhhhhhhhcc------------cCchHHHHHHHHHHHHH
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYL-GSSFGVALSYPLCGVVIDT------------LGWEAAFYVTGALGVVW  173 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~-~~~~g~~~~~~~~~~l~~~------------~gw~~~~~~~~~~~~~~  173 (211)
                      |+-...|...+.+++..|++.||+.+| ++. ...+|..++..+.+.....            ..+...|...+...++.
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 654 3467777666666554311            12455677777666655


Q ss_pred             -HHHHHh
Q psy3615         174 -WVVWMI  179 (211)
Q Consensus       174 -~~~~~~  179 (211)
                       .++.+.
T Consensus       470 ~~~~~~~  476 (493)
T PRK15462        470 VGVVLMI  476 (493)
T ss_pred             HHHHHHH
Confidence             444333

>KOG2615|consensus

Probab=97.81  E-value=7.3e-05  Score=59.50  Aligned_cols=123  Identities=16%  Similarity=0.060  Sum_probs=104.1

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          32 GSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        32 ~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      .+.+|.++.+.|-+.+...+.+.+.+....+..||..  -+-.+..+..+..-..++....  +....+...-.+-.+..
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l~sf~~  366 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTLKSFST  366 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHHHHHHH
Confidence            3678999999999999999999999999889999877  5666666666666666666666  66778888888888888


Q ss_pred             hcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615         110 GLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT  156 (211)
Q Consensus       110 g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~  156 (211)
                      +...+....++....|.++||..+| ......++-++||.++|.+..+
T Consensus       367 A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  367 ASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            8888999999999999999999999 7799999999999999877653

>PTZ00207 hypothetical protein; Provisional

Probab=97.70  E-value=0.00023  Score=60.65  Aligned_cols=132  Identities=7%  Similarity=-0.057  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhCC--------cchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHH
Q psy3615          45 VLGSFFWLHWSTQIPGGVLARSLGT--------KVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSM  116 (211)
Q Consensus        45 ~~~~~~~~~~i~~~~~g~l~dr~G~--------r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~  116 (211)
                      ..++..++.+++.+..|.+....-+        |+..+....++.++.+++.+.  -....+++..++.|++.|..++..
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~--~p~~~L~~~~~lvg~~~G~~~~~~  473 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT--LPKAALPLPYFIAAFANGFMAATI  473 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH--CCccHhHHHHHHHHHHhhHhHHHH
Confidence            6788889999999999988722211        222222222245555555444  112578999999999999999999


Q ss_pred             HHHhhhccCCCchhhHhh-hhhcchhhhhhh-hhhhhhhhccc----------C---chHHHHHHHHHHHHHHHHHHh
Q psy3615         117 HHLVAHWIPPTERSQFIT-SYLGSSFGVALS-YPLCGVVIDTL----------G---WEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       117 ~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~-~~~~~~l~~~~----------g---w~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ...++|+|. ++-|+-.. .+...-+|..+- ..+.|.+.|+.          |   ++.+|++++.++....+....
T Consensus       474 ~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        474 ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            999999999 88888888 667777776543 55666666431          2   678899998888887776544

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.66  E-value=0.0014  Score=54.44  Aligned_cols=126  Identities=10%  Similarity=0.003  Sum_probs=87.5

Q ss_pred             CCcccccC-----CchhhHHHHHHHHHHHHHh-hchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhccc---------
Q psy3615          30 DSGSLFHW-----DSNVQNLVLGSFFWLHWST-QIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWD---------   94 (211)
Q Consensus        30 ~i~~~~~~-----s~~~~~~~~~~~~~~~~i~-~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~---------   94 (211)
                      ++++.+.+     +.+.+.++-+...+.+.+. .++.+++++|++|++++-+....+.....++.+...++         
T Consensus        28 ~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~  107 (472)
T TIGR00769        28 DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTAL  107 (472)
T ss_pred             hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHH
Confidence            34566555     3357788888776666655 88999999999999998877777666655554431111         


Q ss_pred             --------------------HHHHHHHHHHHHhhhhcchH-HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhh
Q psy3615          95 --------------------YKAMAGLRIVQGVIGGLAWP-SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGV  152 (211)
Q Consensus        95 --------------------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~  152 (211)
                                          .|...+..+..-+-.....+ .-..+++|.+..+|-.|..+ +..+.++|..+++.+..+
T Consensus       108 ~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~  187 (472)
T TIGR00769       108 ADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKY  187 (472)
T ss_pred             HHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                12222222333333333444 66789999999999999999 889999999999999888


Q ss_pred             hhc
Q psy3615         153 VID  155 (211)
Q Consensus       153 l~~  155 (211)
                      +.+
T Consensus       188 ~~~  190 (472)
T TIGR00769       188 FSK  190 (472)
T ss_pred             HHH
Confidence            763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.60  E-value=0.0016  Score=52.86  Aligned_cols=134  Identities=7%  Similarity=-0.037  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA  121 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  121 (211)
                      .+.+.-...+-..+..+.+.+..+|+..+.=+....++..++.++.+++  ++.+.-+++-.+.+++.|........+.+
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~--~~v~~~l~Gv~las~ssg~GE~tfL~lt~  138 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS--PSVWVRLLGVVLASLSSGLGEVTFLSLTH  138 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec--cchhHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            3445555556666777778888998876555666777788888888777  88888888889999998887777777644


Q ss_pred             hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCc--hHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGW--EAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw--~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                       .+++    ...+ +..+.+.++.+|...--.+.+ .++  |..+.+...+.++..+..++.+|+
T Consensus       139 -~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  139 -FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             -hcCc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             5543    2355 667777777777666545544 454  667777777766655555555553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332|consensus

Probab=97.52  E-value=0.00025  Score=54.22  Aligned_cols=145  Identities=15%  Similarity=0.107  Sum_probs=94.9

Q ss_pred             CCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhh
Q psy3615          30 DSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIG  109 (211)
Q Consensus        30 ~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~  109 (211)
                      ++-+.++..+.+++.+.....-..++...+.|-++|+-|||+..+.-++.+.++++--   .++++-.++++|.+-|++.
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK---hSpqYkVLmVGR~LGGiaT  138 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK---HSPQYKVLMVGRVLGGIAT  138 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh---cCCceEEEeehhhhhhHHH
Confidence            4456788888999988877777778888889999999999997666555555544321   2367889999999999999


Q ss_pred             hcchHHHHH-HhhhccCCCch-----hhHhh--hhhcchhhhhhhhhhhhhhhcccC--chHHHHHHHHHHHHHHHHH
Q psy3615         110 GLAWPSMHH-LVAHWIPPTER-----SQFIT--SYLGSSFGVALSYPLCGVVIDTLG--WEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       110 g~~~~~~~~-~~~~~~~~~~r-----~~~~~--~~~~~~~g~~~~~~~~~~l~~~~g--w~~~~~~~~~~~~~~~~~~  177 (211)
                      +..+.+.-+ ++.|..+++.-     ..-.+  ...+..+-.+++.+.+..+.+.++  --.+|-..+.+..+...+.
T Consensus       139 sLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvi  216 (454)
T KOG4332|consen  139 SLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVI  216 (454)
T ss_pred             HHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence            887777654 56666543321     11112  224445555666666667766543  3445554444444433333

>KOG3098|consensus

Probab=97.39  E-value=0.0016  Score=53.77  Aligned_cols=102  Identities=7%  Similarity=-0.017  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615          46 LGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP  125 (211)
Q Consensus        46 ~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~  125 (211)
                      .++......++.++.+.+.|+.|+|+.+.++...+.........   .|-+.+++...+.|+|.+..+...-.++++...
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---~N~y~~yfssallG~Gaallw~GqG~ylt~~st  132 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---PNSYYLYFSSALLGFGAALLWTGQGGYLTSNST  132 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---cchHHHHHHHHHhhhhHHheecccceehhhcCC
Confidence            67778888899999999999999999999999999988777655   467888999999999999999999999999999


Q ss_pred             CCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615         126 PTERSQFIT-SYLGSSFGVALSYPLC  150 (211)
Q Consensus       126 ~~~r~~~~~-~~~~~~~g~~~~~~~~  150 (211)
                      ++.+.+..+ .......+..+|..+.
T Consensus       133 ~~tie~Nisi~Wai~~~~li~Ggi~l  158 (461)
T KOG3098|consen  133 RETIERNISIFWAIGQSSLIIGGIIL  158 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence            999998888 5566666666664443

>PRK03612 spermidine synthase; Provisional

Probab=97.35  E-value=0.0053  Score=51.89  Aligned_cols=140  Identities=15%  Similarity=0.112  Sum_probs=81.9

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHH--HH-HHHHHhhhhhc--cc-HHHHHHHHHHHHh
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLA--MF-LISFALPAAAY--WD-YKAMAGLRIVQGV  107 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~--~~-i~~~~~~~~~~--~~-~~~~~~~~~l~G~  107 (211)
                      .+|-+....+.+.+.+..+..+++.+++++.++.-++ ...+-..+  .+ ++..+......  .. ...+....++.++
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  122 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL  122 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777888999999999999999888876432222 22211111  11 11111111100  01 1122334456677


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh-cccCchHHHHHHHHHHHHHHH
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI-DTLGWEAAFYVTGALGVVWWV  175 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-~~~gw~~~~~~~~~~~~~~~~  175 (211)
                      ..|...|....+..+... ++-++..| +|....+|..+|.++.+++. +..|-....++.+.+.++..+
T Consensus       123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            777777776666654332 23567778 99999999999999987654 467765555555555544443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.31  E-value=0.00055  Score=56.52  Aligned_cols=123  Identities=17%  Similarity=0.078  Sum_probs=92.3

Q ss_pred             cCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh-c-------ccHHHHHHHHHHHHh
Q psy3615          36 HWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA-Y-------WDYKAMAGLRIVQGV  107 (211)
Q Consensus        36 ~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~-~-------~~~~~~~~~~~l~G~  107 (211)
                      |.|+...+.+..+..++..++..+......+..-|+++.+..++.++..+.-.... .       ++.+..+.--++..+
T Consensus       251 ~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~  330 (433)
T PF03092_consen  251 HFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEV  330 (433)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHH
Confidence            48888888888888888888888888877777888888888777766555322110 0       122333344566666


Q ss_pred             hhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC
Q psy3615         108 IGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG  158 (211)
Q Consensus       108 ~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g  158 (211)
                      ..+..+.....+++|..|++.-|+..+ .....++|..++..++..+.+..+
T Consensus       331 ~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  331 IGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             HHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            667777788899999999999999999 889999999999999988876654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1237|consensus

Probab=97.26  E-value=0.00075  Score=57.43  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=114.2

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhc-c----------
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAY-W----------   93 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~-~----------   93 (211)
                      .+..++.+++|.+.....-....+.-......+.+++++|- +||-+++.++.++..++..+..+... +          
T Consensus        59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~  138 (571)
T KOG1237|consen   59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK  138 (571)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence            34455677888888777777888888888888999999995 58999999998888887655543210 0          


Q ss_pred             ---------c---HHHHHHHHHHHHhhhhcchHHHHHHhhhccC---CC-c--hhhHhh-hhhcchhhhhhhhhhhhhhh
Q psy3615          94 ---------D---YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP---PT-E--RSQFIT-SYLGSSFGVALSYPLCGVVI  154 (211)
Q Consensus        94 ---------~---~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~---~~-~--r~~~~~-~~~~~~~g~~~~~~~~~~l~  154 (211)
                               +   ...+....-+..+|.|+.-+...++-+|-++   ++ .  +...+. .+...+.|..++..+.-+.-
T Consensus       139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq  218 (571)
T KOG1237|consen  139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ  218 (571)
T ss_pred             CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence                     1   2345566666777889999999999999998   22 2  235566 66888889888888888887


Q ss_pred             cccCchHHHHHHHHHHHHHHHHHH
Q psy3615         155 DTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       155 ~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      ++.+|...|.+......+..++.+
T Consensus       219 ~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  219 DNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hcccceeeccHHHHHHHHHHHHHH
Confidence            889999999988877766655544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.14  E-value=0.0067  Score=50.18  Aligned_cols=141  Identities=14%  Similarity=0.057  Sum_probs=102.9

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCCc--c-----hhHHHHHHHHHHHHHhhhh---h-----cccHHHHHHHHHHH
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTK--V-----VFGVSNLAMFLISFALPAA---A-----YWDYKAMAGLRIVQ  105 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~-----~~~~~~~~~~i~~~~~~~~---~-----~~~~~~~~~~~~l~  105 (211)
                      ...+..+...+...+.+++..++..+.+++  .     -+-++..+++.+.+++...   .     ..+.++++...+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            456778888888889998888888885544  1     1345666666655554433   1     13578889999999


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhh------hhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGV------VIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~------l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      ++|+=+..|...+++.+..|++-.+..++ +......|..++..+++.      ..+.......|+..+...++..+...
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 778888888877777663      22334456677777777776666554


Q ss_pred             hhh
Q psy3615         179 IVV  181 (211)
Q Consensus       179 ~~~  181 (211)
                      ...
T Consensus       485 ~~~  487 (498)
T COG3104         485 LLS  487 (498)
T ss_pred             Hhh
Confidence            433

>KOG0637|consensus

Probab=97.04  E-value=0.00065  Score=55.41  Aligned_cols=123  Identities=12%  Similarity=-0.049  Sum_probs=88.5

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHH----hCCcchhHH-HHHHHHHHHHHhhhhhc------c------
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS----LGTKVVFGV-SNLAMFLISFALPAAAY------W------   93 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~G~r~~~~~-~~~~~~i~~~~~~~~~~------~------   93 (211)
                      +..++|++....+.+-.+..+...+.+++.|..+||    |||||..+. +.....++.++..++.+      +      
T Consensus        58 yl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~  137 (498)
T KOG0637|consen   58 YLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPV  137 (498)
T ss_pred             HHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccccc
Confidence            456788888888888888888889999999999994    788777664 44445556666665521      0      


Q ss_pred             ---cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhh-Hhh-hhhcchhhhhhhhhhhhhh
Q psy3615          94 ---DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQ-FIT-SYLGSSFGVALSYPLCGVV  153 (211)
Q Consensus        94 ---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~-~~~-~~~~~~~g~~~~~~~~~~l  153 (211)
                         ....+++...+.=++.-......-+++.|....+++-+ +++ +..+..+|..+|..++++.
T Consensus       138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence               12334444445555666677788999999988777766 888 6688899999988887643

>KOG3762|consensus

Probab=96.92  E-value=0.00098  Score=55.51  Aligned_cols=80  Identities=14%  Similarity=0.026  Sum_probs=62.2

Q ss_pred             CCCCccccccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHH-HHHHHhhh
Q psy3615          11 PSQSPISLSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMF-LISFALPA   89 (211)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~-i~~~~~~~   89 (211)
                      ..+..+-+...+.+.++.+.+-+++|+++.+.|.+++.--+..+++.+++|.++||+-+||.++++..+.. ...++..+
T Consensus        17 k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~f   96 (618)
T KOG3762|consen   17 KLFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVF   96 (618)
T ss_pred             eeeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheee
Confidence            34445555666777788888889999999999999999999999999999999999987776666555544 44555444


Q ss_pred             h
Q psy3615          90 A   90 (211)
Q Consensus        90 ~   90 (211)
                      .
T Consensus        97 v   97 (618)
T KOG3762|consen   97 V   97 (618)
T ss_pred             c
Confidence            3

>KOG2563|consensus

Probab=96.80  E-value=0.0015  Score=53.23  Aligned_cols=150  Identities=12%  Similarity=0.030  Sum_probs=91.1

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCC-cchhHHHHHHHHHHH-HHhhhhhcc-cHHHHHHHHHHHHhhhh
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGT-KVVFGVSNLAMFLIS-FALPAAAYW-DYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~i~~-~~~~~~~~~-~~~~~~~~~~l~G~~~g  110 (211)
                      .-|.+....|++.....++.++++...|.+.||... |.++++......++. .+....... ..+.+.....+.|.+..
T Consensus       295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~  374 (480)
T KOG2563|consen  295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGT  374 (480)
T ss_pred             cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhc
Confidence            345555678999999999999999999999999865 555555555544442 222222111 23455667778888888


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC---chH-HHHHHHHHHHHHHHHHHhhhcC
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG---WEA-AFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g---w~~-~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      ..+|....+-.|..-|..-+...| .....++-..+-..+-+...+..+   |.. .-+.......+..++..++.|+
T Consensus       375 ~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  375 GYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             CCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            888988888888865555555566 554433333444455555555544   333 3333334444444455554443

>KOG1330|consensus

Probab=96.43  E-value=0.0093  Score=48.98  Aligned_cols=123  Identities=19%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             CchhhHHHHHHHHHHHHHhhchhhHHHHHh----CCcchhHHHHHHHHHHH------HHhhhhhcccHHHHHHHHHHHHh
Q psy3615          38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSL----GTKVVFGVSNLAMFLIS------FALPAAAYWDYKAMAGLRIVQGV  107 (211)
Q Consensus        38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~----G~r~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~~~~l~G~  107 (211)
                      +..+..+...+...+..++.+++|.++||+    .+-.......+..+.+.      +.+......+...+....++.|.
T Consensus       281 ~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~  360 (493)
T KOG1330|consen  281 DHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGE  360 (493)
T ss_pred             ccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            444555666778888899999999999994    22122222222222211      11111111122233344455555


Q ss_pred             hhhc-chHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcc-cCch
Q psy3615         108 IGGL-AWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDT-LGWE  160 (211)
Q Consensus       108 ~~g~-~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~-~gw~  160 (211)
                      .... .+....-+..+..|+++|..+.+ .. ....+|-.-+|.+.|.+.++ .||+
T Consensus       361 ~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  361 TISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            4433 45566678889999999999999 55 66667777777788888876 3555

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.35  E-value=0.028  Score=45.77  Aligned_cols=112  Identities=12%  Similarity=0.099  Sum_probs=78.6

Q ss_pred             CchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHH--HHHHHHhhh-hhcccHHHHHHHHHHHHhhhhcchH
Q psy3615          38 DSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAM--FLISFALPA-AAYWDYKAMAGLRIVQGVIGGLAWP  114 (211)
Q Consensus        38 s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~--~i~~~~~~~-~~~~~~~~~~~~~~l~G~~~g~~~~  114 (211)
                      ..++..+....|.+|-++++--...+  |+  |++.+...+-.  .+..++.++ -..++.|...+..+..|+..|..+.
T Consensus       279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YV  354 (402)
T PF02487_consen  279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYV  354 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence            45677888888999888876543332  33  44433332222  222121111 1126788888899999999999999


Q ss_pred             HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615         115 SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV  153 (211)
Q Consensus       115 ~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l  153 (211)
                      .....+.+-.++++|..+++ ....-++|..++..++-.+
T Consensus       355 NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  355 NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999 8888888888887776544

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3098|consensus

Probab=95.95  E-value=0.16  Score=42.24  Aligned_cols=102  Identities=10%  Similarity=-0.001  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHhhchhhHHHH---HhCCcchhHHHHHHHHHHHHHhhhhhc----------------ccHHHHHHHHHH
Q psy3615          44 LVLGSFFWLHWSTQIPGGVLAR---SLGTKVVFGVSNLAMFLISFALPAAAY----------------WDYKAMAGLRIV  104 (211)
Q Consensus        44 ~~~~~~~~~~~i~~~~~g~l~d---r~G~r~~~~~~~~~~~i~~~~~~~~~~----------------~~~~~~~~~~~l  104 (211)
                      .......++..++....+.+.+   ++|+++.+.++..+..+..++.-+...                +++....+..++
T Consensus       283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l  362 (461)
T KOG3098|consen  283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL  362 (461)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence            3334445555566666666654   679999999998888877776554321                135566778899


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhh
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALS  146 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~  146 (211)
                      .|++-.......+.++....| ++|..+.+ .-.-..++..++
T Consensus       363 ~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~  404 (461)
T KOG3098|consen  363 LGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVA  404 (461)
T ss_pred             HhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999994 66777777 445555555543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.63  E-value=0.21  Score=41.32  Aligned_cols=118  Identities=12%  Similarity=-0.119  Sum_probs=82.9

Q ss_pred             cccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh---hhc-c----cHHHHHHHHHHH
Q psy3615          34 LFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA---AAY-W----DYKAMAGLRIVQ  105 (211)
Q Consensus        34 ~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~---~~~-~----~~~~~~~~~~l~  105 (211)
                      .-|+++..+|..-+...+....+.+...++.+|+|..+.-.++...-..+..++..   ... +    +...++.+-.+.
T Consensus       287 ~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~S  366 (432)
T PF06963_consen  287 SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALS  366 (432)
T ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Confidence            34899999999999999999999999999999999999888887755443333221   111 1    222333333333


Q ss_pred             HhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhh
Q psy3615         106 GVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG  151 (211)
Q Consensus       106 G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~  151 (211)
                      -+|.=.+--+..-++.|..|+++||...+ -....++...+...++-
T Consensus       367 R~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  367 RIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             HHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444456677888999999999999999 55777776666555543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3574|consensus

Probab=95.41  E-value=0.15  Score=41.31  Aligned_cols=120  Identities=10%  Similarity=0.018  Sum_probs=70.2

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHH-----HhCCcchhHH-HHHHHHHHHHHhhhhh---------cc
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLAR-----SLGTKVVFGV-SNLAMFLISFALPAAA---------YW   93 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~d-----r~G~r~~~~~-~~~~~~i~~~~~~~~~---------~~   93 (211)
                      |.+-+.-|.|..+.+.....+.  -...-+++.++.|     |+||||.-++ ...+.+..+.+.+.-.         .+
T Consensus        54 P~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p  131 (510)
T KOG3574|consen   54 PLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLP  131 (510)
T ss_pred             HHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCc
Confidence            3334445556555543222111  1234467888999     9999987542 2222333333332211         12


Q ss_pred             cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615          94 DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC  150 (211)
Q Consensus        94 ~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~  150 (211)
                      +........++.-+..+..-.++-.+.-....+++-|.+.. -..+...|.+++..+.
T Consensus       132 ~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  132 NVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            33344445567777777777888888888888898888887 5577777776665554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.73  E-value=0.0084  Score=50.93  Aligned_cols=138  Identities=13%  Similarity=0.097  Sum_probs=0.0

Q ss_pred             ccccccccccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHH---hhhhh-
Q psy3615          19 SSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFA---LPAAA-   91 (211)
Q Consensus        19 ~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~---~~~~~-   91 (211)
                      .-.+...+.+.+++.+|++++++.+.+.....+ +.+++.+++|++..|+.  .|+.+.+..+...+..+.   ..+.. 
T Consensus       320 ~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C  399 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGC  399 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecC
Confidence            344556678899999999999999988876665 66789999999999875  455555444444443332   11100 


Q ss_pred             -----------c-------------------------------------ccHHHHHHHHHHHHhhhhcchHHHHHHhhhc
Q psy3615          92 -----------Y-------------------------------------WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHW  123 (211)
Q Consensus        92 -----------~-------------------------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~  123 (211)
                                 .                                     +++..+++..++.-+..+.........+-+.
T Consensus       400 ~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~  479 (539)
T PF03137_consen  400 PNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRC  479 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeecc
Confidence                       0                                     0122233444444444444555566667788


Q ss_pred             cCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcc
Q psy3615         124 IPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDT  156 (211)
Q Consensus       124 ~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~  156 (211)
                      .++++|..++| -. ....+|.+-+|++.|.++|.
T Consensus       480 V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  480 VPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -----------------------------------
T ss_pred             CChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            89999999999 44 67778889999999999885

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.22  E-value=0.36  Score=39.94  Aligned_cols=134  Identities=12%  Similarity=-0.074  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH----HHHHhh--hhhcc----cHHHHHH---HHHHHHhhhhc
Q psy3615          45 VLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL----ISFALP--AAAYW----DYKAMAG---LRIVQGVIGGL  111 (211)
Q Consensus        45 ~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i----~~~~~~--~~~~~----~~~~~~~---~~~l~G~~~g~  111 (211)
                      ..-.-.+..++..+..|...||..|.+++..+.+.--+    ++.+..  +...+    +.+....   .-.+.|...-.
T Consensus        43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L  122 (432)
T PF06963_consen   43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL  122 (432)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            33444566778888999999999999987766544322    222211  11111    1122222   12222211111


Q ss_pred             -chHHHHHHhhhcc------CCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         112 -AWPSMHHLVAHWI------PPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       112 -~~~~~~~~~~~~~------~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                       ......+.--||.      +++.+.+.++ .--.=.+...++|.+.|.+....+.+....+.+...++...+=.
T Consensus       123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy  197 (432)
T PF06963_consen  123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY  197 (432)
T ss_pred             HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence             1111112222332      2233444444 33555667899999999999988888888877777777665433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.82  E-value=0.98  Score=38.13  Aligned_cols=118  Identities=13%  Similarity=0.080  Sum_probs=73.1

Q ss_pred             CchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc-------cc---------------
Q psy3615          38 DSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY-------WD---------------   94 (211)
Q Consensus        38 s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~-------~~---------------   94 (211)
                      +.+.+..+=....+ ...+...+-.+++|++++.++.-+....+.....++++...       ++               
T Consensus        56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~  135 (491)
T PF03219_consen   56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFK  135 (491)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHH
Confidence            44455555442222 44566777899999999999887666666555554443211       11               


Q ss_pred             -------HHHHHHHHHHHHhhhhcchH-HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc
Q psy3615          95 -------YKAMAGLRIVQGVIGGLAWP-SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID  155 (211)
Q Consensus        95 -------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~  155 (211)
                             .|.+.+..+..-+-.....+ .-..+.+|.++.+|-.+..+ +..+.++|..++..+..++.+
T Consensus       136 ~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  136 GFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11111111111111112222 34678899999999999999 889999999999888888877

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG4332|consensus

Probab=93.75  E-value=1.9  Score=33.61  Aligned_cols=135  Identities=14%  Similarity=0.057  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCc--chhHHHHHHHHHHHHHhhhhh--cc---cHHHHHHHHHHHHhhhhcchH
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTK--VVFGVSNLAMFLISFALPAAA--YW---DYKAMAGLRIVQGVIGGLAWP  114 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~i~~~~~~~~~--~~---~~~~~~~~~~l~G~~~g~~~~  114 (211)
                      -|.+.+.++++.++++-+..++..|-.+|  ..+.+..++.++...+..+..  .+   +...-+++..+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            48889999999999998888887765443  344454444444333322221  11   233334555556677889999


Q ss_pred             HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         115 SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       115 ~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      ....+=++..|.+.|...+. +-..-++-..++-..-..-....+-|..|-++.....+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            99999999999999999888 445555433332111000001134566777766665555443

>TIGR00806 rfc RFC reduced folate carrier

Probab=93.09  E-value=0.33  Score=40.69  Aligned_cols=94  Identities=10%  Similarity=-0.060  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHH--HHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNL--AMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH  118 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  118 (211)
                      --|.+-++..+..++..+..|++-.++.+---+.++.+  +.+...+++...  +|.|..+++.++.+.......+....
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t--~~Iw~~Y~~yvlf~~~y~flitia~~  376 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQS--HDIWVLYVTYVLFRGIYQFLVPIATF  376 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcc--cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34777888888889999999999776644323333333  333334445445  89999999999999999988888888


Q ss_pred             HhhhccCCCchhhHhhhh
Q psy3615         119 LVAHWIPPTERSQFITSY  136 (211)
Q Consensus       119 ~~~~~~~~~~r~~~~~~~  136 (211)
                      -+++....+.-|...|++
T Consensus       377 ~iA~~L~~~~~aLvFGiN  394 (511)
T TIGR00806       377 QIASSLSKELCALVFGIN  394 (511)
T ss_pred             HHHHHhcccceEEEEecH
Confidence            888888877667777744

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=92.98  E-value=0.037  Score=48.11  Aligned_cols=62  Identities=11%  Similarity=-0.015  Sum_probs=48.0

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHH-HHHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFW-LHWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFA   86 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~   86 (211)
                      ..++.++++++|+++.+.+++.+...+ +.+++.+++|++.||++  .|+.+.++.++..++.++
T Consensus       351 ~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       351 TFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            345666778899999999999988776 67889999999999998  456666666666665433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0637|consensus

Probab=92.58  E-value=0.4  Score=39.72  Aligned_cols=132  Identities=13%  Similarity=-0.026  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHh
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV  120 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~  120 (211)
                      .-.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.++.  ++.......+-..|+-.+.........+
T Consensus       333 ~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~--~~~~~~~~~~~~~G~~~~~~~~~p~~l~  410 (498)
T KOG0637|consen  333 MGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLV--LNTYVVLSHRSTAGILSSPLLTVPYGAL  410 (498)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhh--hhHHHHHHHHhhcceeecchhcccHHHH
Confidence            34555777888889999999999999997777777777677766666655  5666666677777754444443333333


Q ss_pred             hhcc---------------------CCCch--hhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHHH
Q psy3615         121 AHWI---------------------PPTER--SQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVWW  174 (211)
Q Consensus       121 ~~~~---------------------~~~~r--~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~~  174 (211)
                      ++..                     .+..|  |...+ .+....+.+++.....|.+.+..| -+..-...+++.+...
T Consensus       411 ~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~~~  489 (498)
T KOG0637|consen  411 ALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALLIG  489 (498)
T ss_pred             HHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHHHH
Confidence            3221                     11223  33344 446666666666666666666554 3334444444444433

>KOG2325|consensus

Probab=92.09  E-value=0.4  Score=40.17  Aligned_cols=77  Identities=12%  Similarity=0.197  Sum_probs=62.1

Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      ++.|++.-.......++.++...+++++...+ ......++..++|.+........|.|+.+.+.+...++...++..
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~  473 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV  473 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            44566666667778899999999999999999 779999999999999998888889888887777666655554443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.53  E-value=7.6  Score=32.74  Aligned_cols=70  Identities=21%  Similarity=0.203  Sum_probs=49.6

Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCC-chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPT-ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV  172 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~-~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~  172 (211)
                      ++.|+.....+...-..+.+.+|.+ +|...++ +....++...+...+.+.+.+..||.....+.-.+.++
T Consensus       274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4455665666666667777777654 7888888 77776776666666778999999999877766655544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3810|consensus

Probab=91.45  E-value=1.6  Score=35.11  Aligned_cols=94  Identities=10%  Similarity=-0.114  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhh
Q psy3615          43 NLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAH  122 (211)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~  122 (211)
                      |..-++..+..+++.+..|.+.-++.|..-++++......+.+++.....++.|..++..++.+.......+....-+++
T Consensus       274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~  353 (433)
T KOG3810|consen  274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR  353 (433)
T ss_pred             CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence            56677788888899999999988777764444444444334443333434778888888888888888777788888888


Q ss_pred             ccCCCchhhHhhhh
Q psy3615         123 WIPPTERSQFITSY  136 (211)
Q Consensus       123 ~~~~~~r~~~~~~~  136 (211)
                      ....+.-|...|++
T Consensus       354 nL~~e~~gLvFGiN  367 (433)
T KOG3810|consen  354 NLSSELFGLVFGIN  367 (433)
T ss_pred             hhhhhhheeeeehH
Confidence            88777777777744

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.90  E-value=1.5  Score=36.41  Aligned_cols=108  Identities=12%  Similarity=0.022  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCc--chhHH--HHHHHHHHHHHhhhh-------hcccHHHHHHHHHHHHhhhh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTK--VVFGV--SNLAMFLISFALPAA-------AYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r--~~~~~--~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~l~G~~~g  110 (211)
                      .-.+...++++..+|..+..+..- -++|  ++.+.  .=+++....++|..-       ..++-+..++..++.|+..|
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnG  387 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNG  387 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhh
Confidence            345667788888888875544311 1222  33221  122233332333211       11355667788999999999


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC  150 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~  150 (211)
                      ........+..+..++++|..+.. ...+-.+|..+|..++
T Consensus       388 y~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       388 YLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999888877776 5566667766666554

>KOG3626|consensus

Probab=90.70  E-value=0.31  Score=42.77  Aligned_cols=136  Identities=18%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             ccccccccCCCcccccCCchhhHHHHHHHHHH-HHHhhchhhHHHHHhC--CcchhHHHHHHHHHHHHHhh---h-----
Q psy3615          21 RGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWL-HWSTQIPGGVLARSLG--TKVVFGVSNLAMFLISFALP---A-----   89 (211)
Q Consensus        21 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~-~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~i~~~~~~---~-----   89 (211)
                      .+...+++.++..+|+++.+....+++...+. .+++..++|++..|+.  .|....+.++...+..+...   +     
T Consensus       409 ~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~  488 (735)
T KOG3626|consen  409 TGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCES  488 (735)
T ss_pred             hhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCC
Confidence            34456788889999999999999888665554 4677889999999874  45555555554444433311   0     


Q ss_pred             -----------------h-h------------------------------------------c------------c----
Q psy3615          90 -----------------A-A------------------------------------------Y------------W----   93 (211)
Q Consensus        90 -----------------~-~------------------------------------------~------------~----   93 (211)
                                       . .                                          .            +    
T Consensus       489 ~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~  568 (735)
T KOG3626|consen  489 SPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKN  568 (735)
T ss_pred             CcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccC
Confidence                             0 0                                          0            0    


Q ss_pred             ----------------cHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhc
Q psy3615          94 ----------------DYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVID  155 (211)
Q Consensus        94 ----------------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~  155 (211)
                                      .+..+++..++.-+..+...+..+.++-+..++++|..++| .. ....+|.+-+|++.|+++|
T Consensus       569 ~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID  648 (735)
T KOG3626|consen  569 GNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVID  648 (735)
T ss_pred             CCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence                            12334444444445545555667778889999999999999 44 7788899999999999987


Q ss_pred             c
Q psy3615         156 T  156 (211)
Q Consensus       156 ~  156 (211)
                      .
T Consensus       649 ~  649 (735)
T KOG3626|consen  649 T  649 (735)
T ss_pred             h
Confidence            5

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=89.79  E-value=9  Score=32.35  Aligned_cols=119  Identities=13%  Similarity=0.011  Sum_probs=78.4

Q ss_pred             CchhhHHHHHHHHH-HHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcc-------c---------------
Q psy3615          38 DSNVQNLVLGSFFW-LHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYW-------D---------------   94 (211)
Q Consensus        38 s~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~-------~---------------   94 (211)
                      +++.+.++=+..-+ +.++..++..++.+++.+.+++-+-+..+....+++++...+       +               
T Consensus        59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l  138 (509)
T COG3202          59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL  138 (509)
T ss_pred             cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence            34556666665555 667888889999999999999887777777766666654321       1               


Q ss_pred             --------HHHHHHHHHHHHhhhhcchH-HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615          95 --------YKAMAGLRIVQGVIGGLAWP-SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT  156 (211)
Q Consensus        95 --------~~~~~~~~~l~G~~~g~~~~-~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~  156 (211)
                              .|...+..+..=+=.....+ .-.....|.+..+|-.|..+ ++.+.+++..++..+..++.++
T Consensus       139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                    01111111111111122222 34567788888899999999 8899999998888888888763

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=88.99  E-value=2.4  Score=34.93  Aligned_cols=92  Identities=7%  Similarity=-0.066  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHH--HHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615          41 VQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAM--FLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH  118 (211)
Q Consensus        41 ~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  118 (211)
                      --|.+.+...+..+++.+..|++..++.+..-+.++....  +...+++...  ++.|...++.++.+.......+....
T Consensus       286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t--~~Iwv~Y~~yIif~~~y~fliTiA~~  363 (412)
T PF01770_consen  286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFT--GNIWVCYAGYIIFRSLYMFLITIASF  363 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588888889999999999999977776644444444333  3344455445  78999999999888887777777777


Q ss_pred             HhhhccCCCchhhHhh
Q psy3615         119 LVAHWIPPTERSQFIT  134 (211)
Q Consensus       119 ~~~~~~~~~~r~~~~~  134 (211)
                      -++.....+.-+...|
T Consensus       364 qIA~~l~~e~yaLVFG  379 (412)
T PF01770_consen  364 QIAKNLSEERYALVFG  379 (412)
T ss_pred             HHHHhccccceeeeee
Confidence            7777777666665555

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3880|consensus

Probab=88.43  E-value=1.3  Score=35.13  Aligned_cols=135  Identities=10%  Similarity=0.041  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhh
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVA  121 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~  121 (211)
                      .|.+...-.+-..+..+......||+....=+.+...+.+.+.++.++.  ++.++-+.+-.+..++.|.....-..+.+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs--~s~~~sL~GV~~aSissGlGEiTFL~lss  141 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS--NSVPMSLLGVVFASISSGLGEITFLALSS  141 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec--cchhHHHhhhhhhhhcCCcceeehhhhhc
Confidence            3444444455556667777778888754444455556667777788777  77787777777777777765444444333


Q ss_pred             hccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc--ccCchHHHHHHHHHHHHHHHHHHhhhcC
Q psy3615         122 HWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID--TLGWEAAFYVTGALGVVWWVVWMIVVYD  183 (211)
Q Consensus       122 ~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~--~~gw~~~~~~~~~~~~~~~~~~~~~~~~  183 (211)
                      . +++.    ..+ +..+...++.+|..-=..+.+  ...-|.+.+++..+..+..+..++.+++
T Consensus       142 ~-Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  142 R-YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             c-CCCc----eeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCC
Confidence            2 2222    222 333333333333322222333  2345777777777776666666655544

>KOG1479|consensus

Probab=87.40  E-value=2.9  Score=34.30  Aligned_cols=107  Identities=16%  Similarity=0.056  Sum_probs=65.3

Q ss_pred             hHHHHHH-HHHHHHHhhchhhHHHHHhCCcchhHHHHH-HHHHHHHHhhh-----hhcccHHHHHHHHHHHHhhhhcchH
Q psy3615          42 QNLVLGS-FFWLHWSTQIPGGVLARSLGTKVVFGVSNL-AMFLISFALPA-----AAYWDYKAMAGLRIVQGVIGGLAWP  114 (211)
Q Consensus        42 ~~~~~~~-~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~-~~~i~~~~~~~-----~~~~~~~~~~~~~~l~G~~~g~~~~  114 (211)
                      .-..... +++...+|.+...++.++- ||+..+.... ...+..+.+.-     ....+-++++....+.|+..|-...
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYlts  362 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTS  362 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhh
Confidence            3444455 8888888877766665543 3333332222 22222222111     0114567788899999999999989


Q ss_pred             HHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhh
Q psy3615         115 SMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPL  149 (211)
Q Consensus       115 ~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~  149 (211)
                      ..+.+..+-.|++++-.+.. .......|...|..+
T Consensus       363 l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~  398 (406)
T KOG1479|consen  363 LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL  398 (406)
T ss_pred             heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999988887766655 445555555555443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=86.75  E-value=5.7  Score=33.68  Aligned_cols=50  Identities=12%  Similarity=0.101  Sum_probs=32.9

Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV  153 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l  153 (211)
                      +.-+-.+..-.++-.+.-....+++++.+.. -..+.+.|..++..+.-.+
T Consensus       127 ~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  127 ILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhh
Confidence            4444445555566667777778888888887 6677777777766654443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3880|consensus

Probab=86.55  E-value=3.9  Score=32.52  Aligned_cols=68  Identities=16%  Similarity=0.156  Sum_probs=53.6

Q ss_pred             HHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhh
Q psy3615          84 SFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVV  153 (211)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l  153 (211)
                      -.+..+.  ++++...+.-+.-|+-.|..+....--+.+-.++++|-.+++ ....-++|..++..++-.+
T Consensus       333 ~a~~~ft--psi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl  401 (409)
T KOG3880|consen  333 QAWYWFT--PSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL  401 (409)
T ss_pred             HHHHHhc--cHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence            3344445  778888888888898888888888888888888899999999 8788888888777665433

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.32  E-value=2.1  Score=27.91  Aligned_cols=25  Identities=20%  Similarity=0.018  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHhhchhhHHHHHh
Q psy3615          43 NLVLGSFFWLHWSTQIPGGVLARSL   67 (211)
Q Consensus        43 ~~~~~~~~~~~~i~~~~~g~l~dr~   67 (211)
                      +.-.+.-+++..+.....||+.|||
T Consensus        45 a~klssefIsGilVGa~iG~llD~~   69 (116)
T COG5336          45 AFKLSSEFISGILVGAGIGWLLDKF   69 (116)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345566777777788889999997

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=86.23  E-value=0.28  Score=38.64  Aligned_cols=107  Identities=10%  Similarity=0.035  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHhhchhhHHHHH-hCCcchhHH--HHHHHHHHHHHhhhh--------hcccHHHHHHHHHHHHhhhhcc
Q psy3615          44 LVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGV--SNLAMFLISFALPAA--------AYWDYKAMAGLRIVQGVIGGLA  112 (211)
Q Consensus        44 ~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~--~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~l~G~~~g~~  112 (211)
                      .+...++++..+|..+.++..-+ ..+|++...  .=+++....+++-..        ..++-+.+++..++.|+..|..
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34667889999999887764322 134444432  122222222222111        0134466677889999999999


Q ss_pred             hHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhh
Q psy3615         113 WPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLC  150 (211)
Q Consensus       113 ~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~  150 (211)
                      ......+..+..++++|..+.. ......+|..+|..++
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -HHHH----------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888877766 5566666766665554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=85.27  E-value=8.7  Score=32.63  Aligned_cols=58  Identities=10%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT  156 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~  156 (211)
                      ++...+..+..-..+.+..+.-+++.+|..-|+.|. .++..++|+---..+.-+++|.
T Consensus       409 I~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  409 IIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            344555556666778889999999999999999999 8899999987766666666554

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=84.86  E-value=20  Score=29.98  Aligned_cols=48  Identities=17%  Similarity=0.131  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhh
Q psy3615          95 YKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALS  146 (211)
Q Consensus        95 ~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~  146 (211)
                      ++..++.-++.|++.+........+.+ .+|++.-..   +..+.++++.++
T Consensus       106 f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~~~a---~~~G~g~aGv~~  153 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQGSLFGLAG-VFPSTYSSA---VMSGQGLAGVLT  153 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHHHHH---HHhcchhHHHHH
Confidence            555666777888888887777777766 455443222   334444444443

>KOG3097|consensus

Probab=82.99  E-value=1.2  Score=35.56  Aligned_cols=74  Identities=19%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             HHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccC
Q psy3615          49 FFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIP  125 (211)
Q Consensus        49 ~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~  125 (211)
                      ..+..+.++++.+.+..++|-|+++.++...+......-.   .+.+..++......|++.+..+...-+++++.-.
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl---~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL---EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc---chhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3445566777777999999999999988777765443321   2567788899999999999888777766665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	211
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-24
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	3e-04
2cfq_A	417	Lactose permease; transport, transport mechanism,	6e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 98.6 bits (246), Expect = 2e-24
 Identities = 27/181 (14%), Positives = 57/181 (31%), Gaps = 4/181 (2%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNL--AMFLISFALPAAAY 92
             +        L      +  ++   G ++     +V      +  A  ++       A 
Sbjct: 57  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116

Query: 93  WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFITSYL-GSSFGVALSYPLCG 151
                M  L  + G   G+ WP     + HW    ER   ++ +    + G  +   L  
Sbjct: 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176

Query: 152 VVIDTL-GWEAAFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAK 210
           + +     W AA Y+     ++  +    ++ DTP        EE +       N  + +
Sbjct: 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 236

Query: 211 K 211
           +
Sbjct: 237 E 237

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 12/161 (7%)

Query: 23  VLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLA-RSLGTK--VVFGVSNLA 79
           + +     S    H        ++  +  + + +   GG +A R +G +  V +G   + 
Sbjct: 37  LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96

Query: 80  MFLISFALPAAAYWDYKAMAGLRIVQGVIG-GLAWPSMHHLVAHWIPPTER---SQFITS 135
           +  I  ALP  A   + ++  +     +IG G   P++  LV       +R   + F   
Sbjct: 97  LGHIVLALPFGASALFGSIILI-----IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIF 151

Query: 136 YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV 176
             G + G  ++  + G   +  G+  AF +      +  +V
Sbjct: 152 VFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 39.1 bits (91), Expect = 6e-04
 Identities = 14/138 (10%), Positives = 40/138 (28%), Gaps = 5/138 (3%)

Query: 61  GVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHHLV 120
            ++   +G K    ++   M +       A       +  L+ +               +
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFKYI 337

Query: 121 AHWIPPTERS--QFITSYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV-W 177
                    +    +         +     L G + +++G++ A+ V G + + + ++  
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397

Query: 178 MIVVYDTPDQHPRVSAEE 195
             +    P    R    E
Sbjct: 398 FTLSGPGPLSLLRRQVNE 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	211
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.9
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.89
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.88
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.86
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.85
2xut_A	524	Proton/peptide symporter family protein; transport	99.81
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.64
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.57
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.46
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.45
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.08
2xut_A	524	Proton/peptide symporter family protein; transport	99.03

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.90  E-value=3.1e-24  Score=174.19  Aligned_cols=165  Identities=14%  Similarity=0.166  Sum_probs=148.9

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhh----hhcccH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPA----AAYWDY   95 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~----~~~~~~   95 (211)
                      +...+.+..+.+.+++ .+..+.+++.+.+.++..++++++|+++||+|||+++.++.++.+++.+++.+    .  +++
T Consensus        43 ~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~  119 (451)
T 1pw4_A           43 VRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--SSI  119 (451)
T ss_dssp             HHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH--SSS
T ss_pred             HHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcc--ccH
Confidence            3444556667788889 99999999999999999999999999999999999999999999999999988    6  889


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVW  173 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~  173 (211)
                      +.+++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++++.+..| ||+.|++.+++.++.
T Consensus       120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~  199 (451)
T 1pw4_A          120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV  199 (451)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 889999999999999999888888 999999999888877


Q ss_pred             HHHHHhhhcCCCCC
Q psy3615         174 WVVWMIVVYDTPDQ  187 (211)
Q Consensus       174 ~~~~~~~~~~~~~~  187 (211)
                      .++.++..||+++.
T Consensus       200 ~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          200 ALFAFAMMRDTPQS  213 (451)
T ss_dssp             HHHHHHHCCCSSTT
T ss_pred             HHHHHhhccCCHhh
Confidence            77666667776543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.89  E-value=2.1e-23  Score=168.77  Aligned_cols=156  Identities=13%  Similarity=0.101  Sum_probs=139.5

Q ss_pred             cccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh---hhhhcccHHHH
Q psy3615          22 GVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL---PAAAYWDYKAM   98 (211)
Q Consensus        22 ~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~---~~~~~~~~~~~   98 (211)
                      ....+..|.+.+++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++.+++.+++   .+.  ++++.+
T Consensus        43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l  120 (438)
T 3o7q_A           43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEI--MNYTLF  120 (438)
T ss_dssp             HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccc--ccHHHH
Confidence            445556677899999999999999999999999999999999999999999999999999999888   666  889999


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh-cccC------------------
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI-DTLG------------------  158 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~-~~~g------------------  158 (211)
                      ++.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++.+. +..+                  
T Consensus       121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  200 (438)
T 3o7q_A          121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAY  200 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhh
Confidence            999999999999999999999999999999999999 88999999999999999998 5554                  


Q ss_pred             -------chHHHHHHHHHHHHHHHHHHh
Q psy3615         159 -------WEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       159 -------w~~~~~~~~~~~~~~~~~~~~  179 (211)
                             ||+.|++.+.+.++..++.++
T Consensus       201 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          201 KHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                   899998877776665554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.88  E-value=1.7e-23  Score=166.47  Aligned_cols=166  Identities=13%  Similarity=0.098  Sum_probs=148.5

Q ss_pred             cccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          20 SRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      +.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++.++..+.+++.++..+.  ++++.++
T Consensus        15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l~   92 (375)
T 2gfp_A           15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVLI   92 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred             HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHHH
Confidence            34445555666789999999999999999999999999999999999999999999999999999998887  8899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      +.|++.|++.+...+...+++.|++|+++|+++++ ......+|..++|.+++++.+..+||+.|++.+...++..+...
T Consensus        93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  172 (375)
T 2gfp_A           93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA  172 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999 88999999999999999999988999999998888777666555


Q ss_pred             hhhcCCCCC
Q psy3615         179 IVVYDTPDQ  187 (211)
Q Consensus       179 ~~~~~~~~~  187 (211)
                      +..||++++
T Consensus       173 ~~~~~~~~~  181 (375)
T 2gfp_A          173 RWMPETRPV  181 (375)
T ss_dssp             CSSCCCSTT
T ss_pred             HHCcccCCC
Confidence            556765543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.86  E-value=2.6e-21  Score=158.95  Aligned_cols=155  Identities=15%  Similarity=0.166  Sum_probs=137.3

Q ss_pred             cccCCCccc-----ccCCchhhHHHHHHHHHHHHHhhchhhHHHHH-hCCcchhHHHHHHHHHHHHHhhhhhcccHHHHH
Q psy3615          26 QQDGDSGSL-----FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARS-LGTKVVFGVSNLAMFLISFALPAAAYWDYKAMA   99 (211)
Q Consensus        26 ~~~~~i~~~-----~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (211)
                      ...+++.++     +|++..+.+++.+.+.++..+++++.|+++|| +|||+++.++.++.+++.+++.+.  ++++.++
T Consensus        35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~  112 (491)
T 4aps_A           35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--FGASALF  112 (491)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC--CSTTHHH
T ss_pred             HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh--hhHHHHH
Confidence            344445555     99999999999999999999999999999999 899999999999999999998877  8899999


Q ss_pred             HHHHHHHhhhhcchHHHHHHhhhccCCCc--hhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHH
Q psy3615         100 GLRIVQGVIGGLAWPSMHHLVAHWIPPTE--RSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVV  176 (211)
Q Consensus       100 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~  176 (211)
                      +.|++.|++.+...+...+++.|++|+++  |+.+++ .+...++|..++|.+++.+.+..|||+.|++.+...++..++
T Consensus       113 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~  192 (491)
T 4aps_A          113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV  192 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988  777787 779999999999999999999999999999987776666555


Q ss_pred             HHhhhc
Q psy3615         177 WMIVVY  182 (211)
Q Consensus       177 ~~~~~~  182 (211)
                      .++..+
T Consensus       193 ~~~~~~  198 (491)
T 4aps_A          193 YYFGGK  198 (491)
T ss_dssp             HHHHHH
T ss_pred             HHHhCc
Confidence            544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.85  E-value=8.9e-22  Score=161.64  Aligned_cols=167  Identities=15%  Similarity=0.192  Sum_probs=130.5

Q ss_pred             cccccccccCCCccccc--------CCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhh-
Q psy3615          20 SRGVLFQQDGDSGSLFH--------WDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAA-   90 (211)
Q Consensus        20 ~~~~~~~~~~~i~~~~~--------~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~-   90 (211)
                      |.++++...+.++++++        .+..+.+++.+.+.+|.+++++++|+++||+|||+++.++.+++.++.+++++. 
T Consensus        27 d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~  106 (491)
T 4gc0_A           27 DTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPE  106 (491)
T ss_dssp             HHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444455555442        234567899999999999999999999999999999999999999999888731 


Q ss_pred             ---------------hcccHHHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhh
Q psy3615          91 ---------------AYWDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVI  154 (211)
Q Consensus        91 ---------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~  154 (211)
                                     ..++++.++++|++.|++.|...+....+++|+.|+++|++..+ ......+|..+++.++..+.
T Consensus       107 ~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~  186 (491)
T 4gc0_A          107 LGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA  186 (491)
T ss_dssp             TTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence                           12789999999999999999999999999999999999999999 77888999888888876665


Q ss_pred             cc--------cCchHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy3615         155 DT--------LGWEAAFYVTGALGVVWWVVWMIVVYDTPDQ  187 (211)
Q Consensus       155 ~~--------~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (211)
                      ..        .+||..+.......++.. +..+..||+|+.
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~  226 (491)
T 4gc0_A          187 RSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRW  226 (491)
T ss_dssp             TTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHH
T ss_pred             cccccccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHH
Confidence            43        236665655554444443 334557888763

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.81  E-value=1.6e-19  Score=149.44  Aligned_cols=153  Identities=15%  Similarity=0.075  Sum_probs=134.7

Q ss_pred             ccccCCCccccc------CCchhhHHHHHHHHHHHHHhhchhhHHHHHh-CCcchhHHHHHHHHHHHHHhhhhhcc-cHH
Q psy3615          25 FQQDGDSGSLFH------WDSNVQNLVLGSFFWLHWSTQIPGGVLARSL-GTKVVFGVSNLAMFLISFALPAAAYW-DYK   96 (211)
Q Consensus        25 ~~~~~~i~~~~~------~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~i~~~~~~~~~~~-~~~   96 (211)
                      ...++++.+++|      ++..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++.+.  + +++
T Consensus        33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~  110 (524)
T 2xut_A           33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF--EHSVQ  110 (524)
T ss_dssp             HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--SSCHH
T ss_pred             HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--cccHH
Confidence            444556677888      9999999999999999999999999999999 99999999999999999988877  7 899


Q ss_pred             HHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh----hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHH
Q psy3615          97 AMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT----SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVV  172 (211)
Q Consensus        97 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~  172 (211)
                      .+++.|++.|++.+...+...+++.|++|+++|+++.+    .+...++|..++|.+++.+.+..||++.|++.+++.++
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~  190 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFV  190 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999976544    44788999999999999999989999999998877666


Q ss_pred             HHHHHHh
Q psy3615         173 WWVVWMI  179 (211)
Q Consensus       173 ~~~~~~~  179 (211)
                      ..++.++
T Consensus       191 ~~~~~~~  197 (524)
T 2xut_A          191 ATVFFWL  197 (524)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHH
Confidence            5554433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.64  E-value=4.8e-16  Score=125.93  Aligned_cols=154  Identities=12%  Similarity=0.096  Sum_probs=130.7

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHh--CCcchhHHHHHHHH-HHHHHhhhhhcccHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSL--GTKVVFGVSNLAMF-LISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--G~r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      .+..+++.+|++..+.+++.+...++..++.++.|++.||+  |+|+.+.++..+.. ++.++..+....+.+.+.+..+
T Consensus       275 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (451)
T 1pw4_A          275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  354 (451)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence            44455666899999999999999999999999999999999  99999888877766 5655555542236777788888


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchh-hhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSF-GVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIV  180 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~  180 (211)
                      +.|++.+...+....++.|.+|+++|+++++ .+....+ |..++|.+.+.+.+..||+..|++.+++.++..++.++.
T Consensus       355 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          355 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888888999999999999999999 7788888 999999999999999999999999888877766655543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.57  E-value=8e-15  Score=118.31  Aligned_cols=145  Identities=10%  Similarity=0.068  Sum_probs=118.6

Q ss_pred             chhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhhcchHHHHH
Q psy3615          39 SNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGGLAWPSMHH  118 (211)
Q Consensus        39 ~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~  118 (211)
                      ....++..++..++..++.++.|++.||+|||+++..+..+.++..++..+.  ++.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC--CSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455777777788888899999999999999999998888888876666555  66777777777788877767777788


Q ss_pred             HhhhccCCCchhhHhh-h-hhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy3615         119 LVAHWIPPTERSQFIT-S-YLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVYDTP  185 (211)
Q Consensus       119 ~~~~~~~~~~r~~~~~-~-~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (211)
                      ++.|.+|++.|+++.+ . +....+|..++|.+.+++.+..|++..|.+.+++.++..++.++..+|++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            9999999999999988 5 47788999999999999999888888999888887777766555555543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.53  E-value=3e-16  Score=126.66  Aligned_cols=150  Identities=13%  Similarity=0.075  Sum_probs=102.6

Q ss_pred             ccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHh---hhhhcccH-HHHHH
Q psy3615          25 FQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFAL---PAAAYWDY-KAMAG  100 (211)
Q Consensus        25 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~---~~~~~~~~-~~~~~  100 (211)
                      +..+.++++++|+|+.+.+++.+.+.+++.++++++|+++||+|||++++++..+.++.....   .+.  +.. ..+..
T Consensus        28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  105 (417)
T 2cfq_A           28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG--PLLQYNILV  105 (417)
T ss_dssp             TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH--HHHHTTCCH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            344555677899999999999999999999999999999999999999998887765532111   111  111 11233


Q ss_pred             HHHHHHhhhhcchHHHHHHhhhccCC--CchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615         101 LRIVQGVIGGLAWPSMHHLVAHWIPP--TERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus       101 ~~~l~G~~~g~~~~~~~~~~~~~~~~--~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      .+++.|++.+..++.......++.++  ++++...+ ......+|..++|.+++++.+ .+|++.|++.++..++..+..
T Consensus       106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~  184 (417)
T 2cfq_A          106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL  184 (417)
T ss_dssp             HHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH
Confidence            45555554444433333334444332  34566667 667889999999999999887 589999987766654443333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=7.7e-14  Score=112.60  Aligned_cols=144  Identities=11%  Similarity=0.034  Sum_probs=118.4

Q ss_pred             cccCC-CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Q psy3615          26 QQDGD-SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIV  104 (211)
Q Consensus        26 ~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l  104 (211)
                      ..+.+ +++.+|.+..+.++..+...++..++.++.|++.||+|||+++.++.++.+++.++..+.  ++.+.+ ...++
T Consensus       280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~  356 (438)
T 3o7q_A          280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA--GGHVGL-IALTL  356 (438)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--CHHHHH-HHHHH
T ss_pred             HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc--CCcHHH-HHHHH
Confidence            34455 566679999999999999999999999999999999999999999999888888777666  555544 34488


Q ss_pred             HHhhhhcchHHHHHHhhhccCCCchhhHhhhhhcchhhhhhhhhhhhhhhcccC-chHHHHHHHHHHHHH
Q psy3615         105 QGVIGGLAWPSMHHLVAHWIPPTERSQFITSYLGSSFGVALSYPLCGVVIDTLG-WEAAFYVTGALGVVW  173 (211)
Q Consensus       105 ~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~~~~~~~~~~~~  173 (211)
                      .|++.+..++...++..|.+|++ ++.+.+......+|..++|.+.+++.+..| ++..|++.+...++.
T Consensus       357 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          357 CSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            88999999999999999999866 888888333566999999999999999988 999888765544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.46  E-value=1.4e-13  Score=112.90  Aligned_cols=152  Identities=14%  Similarity=-0.051  Sum_probs=118.5

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhH-----HHHHHHHHHHHHhhhhh-------cccHHHH
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFG-----VSNLAMFLISFALPAAA-------YWDYKAM   98 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~-----~~~~~~~i~~~~~~~~~-------~~~~~~~   98 (211)
                      ..+.++.+..+.+++.+...++..++.++.+++.||+|||+...     .+.++.+++.++..+..       ..+.+.+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (491)
T 4aps_A          310 AAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWL  389 (491)
T ss_dssp             HHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHH
T ss_pred             HHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHH
Confidence            34456666667788888899999999999999999999987765     77777777766665531       1256777


Q ss_pred             HHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHH
Q psy3615          99 AGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVW  177 (211)
Q Consensus        99 ~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~  177 (211)
                      ++..++.|++.+...+....++.|.+|+++|+++++ .+....+|..+++.+.+.+.+ .++.+.|...+.+.++..++.
T Consensus       390 ~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  468 (491)
T 4aps_A          390 VGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVL  468 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHH
Confidence            788899999999989999999999999999999999 779999999999999988776 467778888887777766666


Q ss_pred             HhhhcC
Q psy3615         178 MIVVYD  183 (211)
Q Consensus       178 ~~~~~~  183 (211)
                      ++..++
T Consensus       469 ~~~~~~  474 (491)
T 4aps_A          469 VFLSKR  474 (491)
T ss_dssp             HHC---
T ss_pred             HHHHHH
Confidence            554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.45  E-value=9.7e-13  Score=107.77  Aligned_cols=158  Identities=11%  Similarity=0.012  Sum_probs=114.8

Q ss_pred             CCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhc--ccHHHHHHHHHHHH
Q psy3615          29 GDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAY--WDYKAMAGLRIVQG  106 (211)
Q Consensus        29 ~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~l~G  106 (211)
                      +.+.+..+.+............+...++.++.+++.||+|||+.++.+....+++.+.......  ...+..++..++..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  380 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            4455666777777777777888889999999999999999999999988888877665543321  11222222222222


Q ss_pred             hh-hhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhc------ccCchHHHHHHHHHHHHHHHHHH
Q psy3615         107 VI-GGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVID------TLGWEAAFYVTGALGVVWWVVWM  178 (211)
Q Consensus       107 ~~-~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~------~~gw~~~~~~~~~~~~~~~~~~~  178 (211)
                      .+ .....+....+.+|.+|.+.|+++++ ......++..+++.+...+.+      ..++...|++.++++++..++.+
T Consensus       381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~  460 (491)
T 4gc0_A          381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  460 (491)
T ss_dssp             HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            22 22245677889999999999999999 778888888888777665543      34567788888889888888888


Q ss_pred             hhhcCCCC
Q psy3615         179 IVVYDTPD  186 (211)
Q Consensus       179 ~~~~~~~~  186 (211)
                      ++.||++.
T Consensus       461 ~~~PETkg  468 (491)
T 4gc0_A          461 KFVPETKG  468 (491)
T ss_dssp             HHCCCCTT
T ss_pred             heecCCCC
Confidence            88998754

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.08  E-value=1.2e-11  Score=97.85  Aligned_cols=138  Identities=9%  Similarity=-0.090  Sum_probs=106.5

Q ss_pred             cccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHH-HHHHHH--HhhhhhcccHHHHHHHH
Q psy3615          26 QQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLA-MFLISF--ALPAAAYWDYKAMAGLR  102 (211)
Q Consensus        26 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~i~~~--~~~~~~~~~~~~~~~~~  102 (211)
                      ..+..+++++|.++.+.+++.+...++..++.++.+++.||++++  +..+... ...+..  .......++.+.+++..
T Consensus       221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (375)
T 2gfp_A          221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPA  298 (375)
T ss_dssp             HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHH
Confidence            344555666899999999999999999999999999999999882  3333333 222222  11111123567777888


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHH
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVT  166 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~  166 (211)
                      ++.|++.+...+....++.|..| ++|+++.+ .+....+|..++|.+.+.+.+..+++..++..
T Consensus       299 ~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          299 ALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            89999999999999999999998 89999999 77999999999999999998877777666654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.03  E-value=3.6e-10  Score=93.29  Aligned_cols=142  Identities=8%  Similarity=-0.068  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHHHHhhchhhHHH----HHhCCc----chhHHHHHHHHHHHHHhhhhh-------cccHHHHHHHHHHHH
Q psy3615          42 QNLVLGSFFWLHWSTQIPGGVLA----RSLGTK----VVFGVSNLAMFLISFALPAAA-------YWDYKAMAGLRIVQG  106 (211)
Q Consensus        42 ~~~~~~~~~~~~~i~~~~~g~l~----dr~G~r----~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~l~G  106 (211)
                      .+.+.....++..+..++.+++.    ||.|+|    +.+.++.++.+++.++..+..       ..+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            45555555566666777777664    555432    456677777777776665531       135677778889999


Q ss_pred             hhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhccc--Cc---------hHHHHHHHHHHHHHH
Q psy3615         107 VIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDTL--GW---------EAAFYVTGALGVVWW  174 (211)
Q Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~--gw---------~~~~~~~~~~~~~~~  174 (211)
                      ++.+...+....++.|..|+++|+++++ .+....+|..++|.+.+.+.+..  +|         +..|++.+.+.++..
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA  496 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 88999999999999999887742  23         233666666666655


Q ss_pred             HHHHhhhcC
Q psy3615         175 VVWMIVVYD  183 (211)
Q Consensus       175 ~~~~~~~~~  183 (211)
                      ++.++..++
T Consensus       497 ~~~~~~~~~  505 (524)
T 2xut_A          497 IVFALYARS  505 (524)
T ss_dssp             HHHC-----
T ss_pred             HHHHHHHHH
Confidence            555444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	211
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-06
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 4/181 (2%)

Query: 35  FHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNL--AMFLISFALPAAAY 92
             +        L      +  ++   G ++     +V      +  A  ++       A 
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 93  WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCG 151
                M  L  + G   G+ WP     + HW    ER   ++      + G  +   L  
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173

Query: 152 VVIDTLGWEA-AFYVTGALGVVWWVVWMIVVYDTPDQHPRVSAEEKEYIQQALGNTVSAK 210
           + +        A Y+     ++  +    ++ DTP        EE +       N  + +
Sbjct: 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 233

Query: 211 K 211
           +
Sbjct: 234 E 234

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 7/91 (7%), Positives = 28/91 (30%), Gaps = 2/91 (2%)

Query: 93  WDYKAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERS--QFITSYLGSSFGVALSYPLC 150
                +  L+ +               +         +    +         +     L 
Sbjct: 310 TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369

Query: 151 GVVIDTLGWEAAFYVTGALGVVWWVVWMIVV 181
           G + +++G++ A+ V G + + + ++ +  +
Sbjct: 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTL 400

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	211
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.66
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.54
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.51

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.4e-24  Score=170.69  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=145.3

Q ss_pred             cccccccccccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhh--cccH
Q psy3615          18 LSSRGVLFQQDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAA--YWDY   95 (211)
Q Consensus        18 ~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~--~~~~   95 (211)
                      +.++..++...|.++ |+|+|.++.|++.+.+.+++.++++++|+++||+|||+++.++.++.+++.+++++..  .+++
T Consensus        38 ~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (447)
T d1pw4a_          38 YLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI  116 (447)
T ss_dssp             HHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS
T ss_pred             HHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhH
Confidence            345556666667665 5899999999999999999999999999999999999999999999999888876642  2467


Q ss_pred             HHHHHHHHHHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchhhhhhhhhhhhhhhcc-cCchHHHHHHHHHHHHH
Q psy3615          96 KAMAGLRIVQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSFGVALSYPLCGVVIDT-LGWEAAFYVTGALGVVW  173 (211)
Q Consensus        96 ~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~-~gw~~~~~~~~~~~~~~  173 (211)
                      +.+++.|++.|++.+...+....++.|++|+++|+++++ ......+|..+++.+++.+.+. .+||+.|++.+.+.++.
T Consensus       117 ~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  196 (447)
T d1pw4a_         117 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV  196 (447)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHH
Confidence            889999999999999999999999999999999999999 8899999999999998877665 47999999988888887


Q ss_pred             HHHHHhhhcCCCC
Q psy3615         174 WVVWMIVVYDTPD  186 (211)
Q Consensus       174 ~~~~~~~~~~~~~  186 (211)
                      .++.++..+++|+
T Consensus       197 ~~~~~~~~~~~~~  209 (447)
T d1pw4a_         197 ALFAFAMMRDTPQ  209 (447)
T ss_dssp             HHHHHHHCCCSST
T ss_pred             HHHHHHhcccchh
Confidence            7777776666554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3e-16  Score=122.45  Aligned_cols=150  Identities=10%  Similarity=0.047  Sum_probs=132.6

Q ss_pred             CcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHhhhh
Q psy3615          31 SGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKAMAGLRIVQGVIGG  110 (211)
Q Consensus        31 i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~~g  110 (211)
                      ..++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.  ++.+.+++..++.|++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~g~~~~  327 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA--TSALEVVILKTLHMFEVP  327 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccc--cccchhhHHHHHHHHHHH
Confidence            344555566777888888999999999999999999999999999999999988888777  888999999999999999


Q ss_pred             cchHHHHHHhhhccCCCchhhHhh-hh-hcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhhc
Q psy3615         111 LAWPSMHHLVAHWIPPTERSQFIT-SY-LGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVVY  182 (211)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~r~~~~~-~~-~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  182 (211)
                      ...+...+++.|.+|+++|++..+ .+ ....+|..++|.+.|++.++.|++..|++.+++.++..++..+..+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  401 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999 55 5677999999999999999999999999999888887777666554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.2e-15  Score=118.96  Aligned_cols=158  Identities=13%  Similarity=0.098  Sum_probs=109.7

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHHHHHHhhhhhcccHHH----HHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFLISFALPAAAYWDYKA----MAGLR  102 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~  102 (211)
                      .+.++++++|+|+.+.|++.+++.++..+++++.|+++||+|||++++++.....++..+..+.  .+...    ....+
T Consensus        30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  107 (417)
T d1pv7a_          30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIF--IFGPLLQYNILVGS  107 (417)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHH--THHHHHHTTCHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence            3445778899999999999999999999999999999999999999999998888877776655  33332    34445


Q ss_pred             HHHHhhhhcchHHHHHHhhhccCCC--chhhHhh-hhhcchhhhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHh
Q psy3615         103 IVQGVIGGLAWPSMHHLVAHWIPPT--ERSQFIT-SYLGSSFGVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMI  179 (211)
Q Consensus       103 ~l~G~~~g~~~~~~~~~~~~~~~~~--~r~~~~~-~~~~~~~g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~  179 (211)
                      .+.+.+.+...........+..+++  ++....+ .......+..+++.+++.+.+. +|+..+........+..++..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~  186 (417)
T d1pv7a_         108 IVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFF  186 (417)
T ss_dssp             HHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHH
Confidence            5555555544444444444443332  3334444 5577778888999998888774 5666666666665555555555


Q ss_pred             hhcCCCCC
Q psy3615         180 VVYDTPDQ  187 (211)
Q Consensus       180 ~~~~~~~~  187 (211)
                      ..++.++.
T Consensus       187 ~~~~~~~~  194 (417)
T d1pv7a_         187 AKTDAPSS  194 (417)
T ss_dssp             SCCCSCSS
T ss_pred             Hhcccccc
Confidence            55555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.1e-14  Score=113.81  Aligned_cols=155  Identities=11%  Similarity=0.037  Sum_probs=120.8

Q ss_pred             ccCCCcccccCCchhhHHHHHHHHHHHHHhhchhhHHHHHhCCcchhHHHHHHHHH---HHHHhhhhhcccHHHHHHHHH
Q psy3615          27 QDGDSGSLFHWDSNVQNLVLGSFFWLHWSTQIPGGVLARSLGTKVVFGVSNLAMFL---ISFALPAAAYWDYKAMAGLRI  103 (211)
Q Consensus        27 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~  103 (211)
                      .+.++.+.++.+..+.++......++..++.++.|++.||+++|+..........+   +..........+.+...+..+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (447)
T d1pw4a_         272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  351 (447)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            44556788899999999999999999999999999999999987755444333322   222222222346777778888


Q ss_pred             HHHhhhhcchHHHHHHhhhccCCCchhhHhh-hhhcchh-hhhhhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHhhh
Q psy3615         104 VQGVIGGLAWPSMHHLVAHWIPPTERSQFIT-SYLGSSF-GVALSYPLCGVVIDTLGWEAAFYVTGALGVVWWVVWMIVV  181 (211)
Q Consensus       104 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~-g~~~~~~~~~~l~~~~gw~~~~~~~~~~~~~~~~~~~~~~  181 (211)
                      +.|++.+...+....+..|.+|++.|+++.+ .+....+ |..++|.+.+++.+..||+..|++.....++..++..+..
T Consensus       352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            8898888888889999999999999999999 7766665 5677899999999999999999888777766665554433