Psyllid ID: psy3632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MEVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVSHKW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHccccccHHHcccHHHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHccccEEEEEccHHHHHHHccccHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mevqprqsiispsfdfnkmgiggldkEFTAIFRRAfasrvfppevVEQLGCQHVkgillygppgtgktLMARQIGQMLnarepkivngpqvldkyvgesEANVRRLFADAEEEEKRVSHKW
Flexible Loop (DISEMBL)
mevqprqsiispsfdfnkmGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLfadaeeeekrvshkw
Low Complexity Region (SEG)
MEVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVSHKW
Disordered region (IsUnstruct)
*************FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG************************
Disordered Region (DISOPRED)
**********SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE*******
Disordered Region (DISEMBL)
MEVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFA*************
Disordered Region (DISPRO)
**VQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYxxxxxxxxxxxxxxxxxxxxxVSHKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
P46461	745	Vesicle-fusing ATPase 1 O	yes	N/A	0.909	0.147	0.892	7e-56
P54351	752	Vesicle-fusing ATPase 2 O	no	N/A	0.925	0.148	0.883	1e-54
Q5R410	744	Vesicle-fusing ATPase OS=	yes	N/A	0.859	0.139	0.803	2e-52
P46459	744	Vesicle-fusing ATPase OS=	yes	N/A	0.859	0.139	0.803	2e-52
P18708	744	Vesicle-fusing ATPase OS=	yes	N/A	0.859	0.139	0.803	3e-52
Q9QUL6	744	Vesicle-fusing ATPase OS=	yes	N/A	0.859	0.139	0.803	3e-52
P46460	744	Vesicle-fusing ATPase OS=	yes	N/A	0.859	0.139	0.803	3e-52
Q94392	824	Vesicle-fusing ATPase OS=	yes	N/A	0.917	0.134	0.801	2e-49
Q9P7Q4	792	Vesicular-fusion protein	yes	N/A	0.884	0.135	0.766	5e-45
P18759	758	Vesicular-fusion protein	yes	N/A	0.917	0.146	0.696	2e-43

>sp|P46461|NSF1_DROME Vesicle-fusing ATPase 1 OS=Drosophila melanogaster GN=comt PE=2 SV=1

 Score =  215 bits (547), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DF KMGIGGLDKEF +IFRRAFASRVFPPE+VEQLGC+HVKGILLYGPPGT
Sbjct: 205 RQSIINPDWDFGKMGIGGLDKEFNSIFRRAFASRVFPPELVEQLGCKHVKGILLYGPPGT 264

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEANVRRLFA+AEEEEKR+
Sbjct: 265 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRL 316

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 6

>sp|P54351|NSF2_DROME Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 107/112 (95%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DF KMGIGGLDKEF AIFRRAFASRVFPPE+VEQLG +HVKGILLYGPPGT
Sbjct: 210 RQSIINPDWDFGKMGIGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGT 269

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFA+AEEEEKR+
Sbjct: 270 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRL 321

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q5R410|NSF_PONAB Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct: 205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct: 265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|P46459|NSF_HUMAN Vesicle-fusing ATPase OS=Homo sapiens GN=NSF PE=1 SV=3

 Score =  203 bits (517), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct: 205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct: 265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|P18708|NSF_CRIGR Vesicle-fusing ATPase OS=Cricetulus griseus GN=NSF PE=1 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct: 205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct: 265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Cricetulus griseus (taxid: 10029)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q9QUL6|NSF_RAT Vesicle-fusing ATPase OS=Rattus norvegicus GN=Nsf PE=1 SV=1

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct: 205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct: 265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin. Interaction with AMPAR subunit GRIA2 leads to influence GRIA2 membrane cycling.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|P46460|NSF_MOUSE Vesicle-fusing ATPase OS=Mus musculus GN=Nsf PE=1 SV=2

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct: 205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct: 265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack GRIA2 leads to influence GRIA2 membrane cycling.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q94392|NSF_CAEEL Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/111 (80%), Positives = 103/111 (92%)

Query: 7   QSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTG 66
           +SII+P +DF +MGIGGLD EF+ IFRRAFASRVFPPE +EQLG +HV+GILL+GPPGTG
Sbjct: 283 RSIINPDWDFQQMGIGGLDTEFSHIFRRAFASRVFPPEFIEQLGMKHVRGILLFGPPGTG 342

Query: 67  KTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           KTLMARQIG+MLNAREPKIVNGPQ+LDKYVGESE+NVR+LFADAEEE +R 
Sbjct: 343 KTLMARQIGKMLNAREPKIVNGPQILDKYVGESESNVRKLFADAEEEWRRC 393

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 6

>sp|Q9P7Q4|SEC18_SCHPO Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec18 PE=1 SV=1

 Score =  179 bits (453), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 95/107 (88%)

Query: 7   QSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTG 66
            +I+ P F F  MGIGGLD EF+AIFRRAFASR+FPP +VE+LG  HVKGILLYGPPGTG
Sbjct: 257 NAILQPGFKFEDMGIGGLDSEFSAIFRRAFASRLFPPGMVEKLGINHVKGILLYGPPGTG 316

Query: 67  KTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
           KTL+ARQIG+MLNAREPKIVNGP++L+KYVG+SE NVR+LFADAE E
Sbjct: 317 KTLIARQIGKMLNAREPKIVNGPEILNKYVGQSEENVRKLFADAERE 363

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P18759|SEC18_YEAST Vesicular-fusion protein SEC18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC18 PE=1 SV=2

 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 94/112 (83%), Gaps = 1/112 (0%)

Query: 3   VQPR-QSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYG 61
           ++PR  ++I P F F  +G+GGLDKEFT IFRRAFASR+FPP V+E+LG  HVKG+LLYG
Sbjct: 222 LRPRSNAVIRPDFKFEDLGVGGLDKEFTKIFRRAFASRIFPPSVIEKLGISHVKGLLLYG 281

Query: 62  PPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
           PPGTGKTL+AR+IG MLNA+EPKIVNGP++L KYVG SE N+R LF DAE E
Sbjct: 282 PPGTGKTLIARKIGTMLNAKEPKIVNGPEILSKYVGSSEENIRNLFKDAEAE 333

Required for vesicle-mediated transport. Catalyzes the fusion of transport vesicles within the Golgi cisternae. Is also required for transport from the endoplasmic reticulum to the Golgi stack. Seem to function as a fusion protein required for the delivery of cargo proteins to all compartments of the Golgi stack independent of vesicle origin.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
357619681	746	N-ethylmaleimide sensitive fusion protei	0.942	0.152	0.912	8e-57
29169218	711	N-ethylmaleimide sensitive fusion protei	0.942	0.160	0.894	7e-56
57903680	732	N-ethylmaleimide sensitive fusion protei	0.942	0.155	0.894	8e-56
229576829	744	vesicle-fusing ATPase [Nasonia vitripenn	0.925	0.150	0.910	2e-55
328793374	773	PREDICTED: vesicle-fusing ATPase 1-like	0.925	0.144	0.901	3e-55
380019699	743	PREDICTED: vesicle-fusing ATPase 1-like	0.925	0.150	0.901	4e-55
6580808	745	N-ethylmaleimide sensitive fusion protei	0.942	0.153	0.894	4e-55
350403605	743	PREDICTED: vesicle-fusing ATPase 1-like	0.925	0.150	0.892	8e-55
340722867	744	PREDICTED: vesicle-fusing ATPase 1-like	0.925	0.150	0.892	9e-55
195046886	745	GH24638 [Drosophila grimshawi] gi|193893	0.925	0.150	0.901	9e-55

>gi|357619681|gb|EHJ72156.1| N-ethylmaleimide sensitive fusion protein [Danaus plexippus]

 Score =  223 bits (569), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 104/114 (91%), Positives = 110/114 (96%)

Query: 4   QPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPP 63
           QPRQSII+P +DF KMGIGGLDKEF AIFRRAFASRVFPPEVVEQLGC+HVKGILLYGPP
Sbjct: 203 QPRQSIINPDWDFGKMGIGGLDKEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPP 262

Query: 64  GTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GTGKTLMARQIG+MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFADAEEEEKR 
Sbjct: 263 GTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRC 316

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|29169218|gb|AAO65962.1| N-ethylmaleimide sensitive fusion protein [Helicoverpa zea]

 Score =  220 bits (561), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 110/114 (96%)

Query: 4   QPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPP 63
           QPRQSII+P +DF KMGIGGLD+EF AIFRRAFASRVFPPEVVEQLGC+HVKGILLYGPP
Sbjct: 204 QPRQSIINPDWDFGKMGIGGLDREFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPP 263

Query: 64  GTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GTGKTLMARQIG+MLNAREPKI+NGPQ+LDKYVGESEAN+RRLFADAEEEEKR 
Sbjct: 264 GTGKTLMARQIGKMLNAREPKILNGPQILDKYVGESEANIRRLFADAEEEEKRC 317

Source: Helicoverpa zea

Species: Helicoverpa zea

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|57903680|gb|AAW58140.1| N-ethylmaleimide sensitive fusion protein [Helicoverpa armigera]

 Score =  220 bits (561), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 109/114 (95%)

Query: 4   QPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPP 63
           QPRQSII+P +DF KMGIGGLD+EF AIFRRAFASRVFPPEVVEQLGC+HVKGILLYGPP
Sbjct: 203 QPRQSIINPDWDFGKMGIGGLDREFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLYGPP 262

Query: 64  GTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GTGKTLM RQIG+MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFADAEEEEKR 
Sbjct: 263 GTGKTLMVRQIGKMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRC 316

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229576829|ref|NP_001153385.1| vesicle-fusing ATPase [Nasonia vitripennis]

 Score =  219 bits (557), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/112 (91%), Positives = 109/112 (97%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DFNKMGIGGLDKEF+AIFRRAFASRVFPPEVV QLGC+HVKGILLYGPPGT
Sbjct: 209 RQSIINPDWDFNKMGIGGLDKEFSAIFRRAFASRVFPPEVVIQLGCKHVKGILLYGPPGT 268

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFADAEEEEKR+
Sbjct: 269 GKTLMARQIGNMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRL 320

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328793374|ref|XP_001120201.2| PREDICTED: vesicle-fusing ATPase 1-like isoform 2 [Apis mellifera]

 Score =  218 bits (555), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DF KMGIGGLDKEFTAIFRRAFASRVFPPE+V QLGC+HVKGILLYGPPGT
Sbjct: 208 RQSIINPDWDFQKMGIGGLDKEFTAIFRRAFASRVFPPEIVTQLGCKHVKGILLYGPPGT 267

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFADAEEEEKR+
Sbjct: 268 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRL 319

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019699|ref|XP_003693740.1| PREDICTED: vesicle-fusing ATPase 1-like [Apis florea]

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DF KMGIGGLDKEFTAIFRRAFASRVFPPE+V QLGC+HVKGILLYGPPGT
Sbjct: 208 RQSIINPDWDFQKMGIGGLDKEFTAIFRRAFASRVFPPEIVTQLGCKHVKGILLYGPPGT 267

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFADAEEEEKR+
Sbjct: 268 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRL 319

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6580808|gb|AAF18300.1|AF118384_1 N-ethylmaleimide sensitive fusion protein [Manduca sexta]

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 109/114 (95%)

Query: 4   QPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPP 63
           QPRQSII+P +DF KMGIGGLDKEF AIFRRAFASRVFPPEVVEQLGC+HVKGILL+GPP
Sbjct: 203 QPRQSIINPDWDFGKMGIGGLDKEFNAIFRRAFASRVFPPEVVEQLGCKHVKGILLFGPP 262

Query: 64  GTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GTGKTLMARQIG+MLNAREPKIVNGPQ+LDKYVGESEAN+R LFADAEEEEKR 
Sbjct: 263 GTGKTLMARQIGKMLNAREPKIVNGPQILDKYVGESEANIRPLFADAEEEEKRC 316

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403605|ref|XP_003486851.1| PREDICTED: vesicle-fusing ATPase 1-like [Bombus impatiens]

 Score =  217 bits (552), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DF KMGIGGLDKEF+AIFRRAFASRVFPPE+V QLGC+HVKGILLYGPPGT
Sbjct: 208 RQSIINPDWDFQKMGIGGLDKEFSAIFRRAFASRVFPPEIVTQLGCKHVKGILLYGPPGT 267

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFADAEEEEKR+
Sbjct: 268 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRL 319

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722867|ref|XP_003399822.1| PREDICTED: vesicle-fusing ATPase 1-like [Bombus terrestris]

 Score =  217 bits (552), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 100/112 (89%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DF KMGIGGLDKEF+AIFRRAFASRVFPPE+V QLGC+HVKGILLYGPPGT
Sbjct: 208 RQSIINPDWDFQKMGIGGLDKEFSAIFRRAFASRVFPPEIVTQLGCKHVKGILLYGPPGT 267

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFADAEEEEKR+
Sbjct: 268 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFADAEEEEKRL 319

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195046886|ref|XP_001992230.1| GH24638 [Drosophila grimshawi] gi|193893071|gb|EDV91937.1| GH24638 [Drosophila grimshawi]

 Score =  217 bits (552), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 101/112 (90%), Positives = 108/112 (96%)

Query: 6   RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
           RQSII+P +DF KMGIGGLD+EF AIFRRAFASRVFPPE+VEQLGC+HVKGILLYGPPGT
Sbjct: 205 RQSIINPDWDFGKMGIGGLDQEFNAIFRRAFASRVFPPELVEQLGCKHVKGILLYGPPGT 264

Query: 66  GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEANVRRLFADAEEEEKR+
Sbjct: 265 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFADAEEEEKRL 316

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
FB|FBgn0000346	745	comt "comatose" [Drosophila me	0.925	0.150	0.892	1.1e-50
FB|FBgn0013998	752	Nsf2 "NEM-sensitive fusion pro	0.925	0.148	0.883	1.1e-49
UNIPROTKB|E1C646	744	NSF "Uncharacterized protein"	0.925	0.150	0.812	1.2e-47
UNIPROTKB|E1BQU4	745	NSF "Uncharacterized protein"	0.925	0.150	0.812	1.2e-47
UNIPROTKB|E1C649	747	NSF "Uncharacterized protein"	0.925	0.149	0.812	1.2e-47
UNIPROTKB|B4DFA2	644	NSF "cDNA FLJ59316, highly sim	0.925	0.173	0.803	1.2e-47
UNIPROTKB|I3L0N3	739	NSF "Vesicle-fusing ATPase" [H	0.925	0.151	0.803	2.4e-47
UNIPROTKB|P46459	744	NSF "Vesicle-fusing ATPase" [H	0.925	0.150	0.803	2.5e-47
UNIPROTKB|P18708	744	NSF "Vesicle-fusing ATPase" [C	0.925	0.150	0.803	2.5e-47
MGI|MGI:104560	744	Nsf "N-ethylmaleimide sensitiv	0.925	0.150	0.803	2.5e-47

FB|FBgn0000346 comt "comatose" [Drosophila melanogaster (taxid:7227)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 100/112 (89%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P +DF KMGIGGLDKEF +IFRRAFASRVFPPE+VEQLGC+HVKGILLYGPPGT
Sbjct:   205 RQSIINPDWDFGKMGIGGLDKEFNSIFRRAFASRVFPPELVEQLGCKHVKGILLYGPPGT 264

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEANVRRLFA+AEEEEKR+
Sbjct:   265 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANVRRLFAEAEEEEKRL 316

GO:0005737 "cytoplasm" evidence=ISS;NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0007030 "Golgi organization" evidence=IMP

GO:0016887 "ATPase activity" evidence=TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048172 "regulation of short-term neuronal synaptic plasticity" evidence=IDA

FB|FBgn0013998 Nsf2 "NEM-sensitive fusion protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 519 (187.8 bits), Expect = 1.1e-49, P = 1.1e-49
 Identities = 99/112 (88%), Positives = 107/112 (95%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P +DF KMGIGGLDKEF AIFRRAFASRVFPPE+VEQLG +HVKGILLYGPPGT
Sbjct:   210 RQSIINPDWDFGKMGIGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGT 269

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTLMARQIG MLNAREPKIVNGPQ+LDKYVGESEAN+RRLFA+AEEEEKR+
Sbjct:   270 GKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRL 321

GO:0005737 "cytoplasm" evidence=ISS;NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=NAS

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

UNIPROTKB|E1C646 NSF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 501 (181.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 91/112 (81%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTLMARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   265 GKTLMARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BQU4 NSF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 501 (181.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 91/112 (81%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTLMARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   265 GKTLMARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C649 NSF "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 501 (181.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 91/112 (81%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTLMARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   265 GKTLMARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

GO:0005524 "ATP binding" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

UNIPROTKB|B4DFA2 NSF "cDNA FLJ59316, highly similar to Vesicle-fusing ATPase (EC 3.6.4.6)" [Homo sapiens (taxid:9606)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   111 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 170

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   171 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 222

GO:0005524 "ATP binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|I3L0N3 NSF "Vesicle-fusing ATPase" [Homo sapiens (taxid:9606)]

 Score = 498 (180.4 bits), Expect = 2.4e-47, P = 2.4e-47
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   200 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 259

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   260 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 311

GO:0005524 "ATP binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

UNIPROTKB|P46459 NSF "Vesicle-fusing ATPase" [Homo sapiens (taxid:9606)]

 Score = 498 (180.4 bits), Expect = 2.5e-47, P = 2.5e-47
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

GO:0005524 "ATP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0042623 "ATPase activity, coupled" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0032403 "protein complex binding" evidence=IDA

GO:0006887 "exocytosis" evidence=TAS

GO:0045026 "plasma membrane fusion" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0001921 "positive regulation of receptor recycling" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P18708 NSF "Vesicle-fusing ATPase" [Cricetulus griseus (taxid:10029)]

 Score = 498 (180.4 bits), Expect = 2.5e-47, P = 2.5e-47
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

GO:0030496 "midbody" evidence=IDA

MGI|MGI:104560 Nsf "N-ethylmaleimide sensitive fusion protein" [Mus musculus (taxid:10090)]

 Score = 498 (180.4 bits), Expect = 2.5e-47, P = 2.5e-47
 Identities = 90/112 (80%), Positives = 108/112 (96%)

Query:     6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGT 65
             RQSII+P ++F KMGIGGLDKEF+ IFRRAFASRVFPPE+VEQ+GC+HVKGILLYGPPG 
Sbjct:   205 RQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGILLYGPPGC 264

Query:    66 GKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
             GKTL+ARQIG+MLNAREPK+VNGP++L+KYVGESEAN+R+LFADAEEE++R+
Sbjct:   265 GKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRL 316

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001921 "positive regulation of receptor recycling" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005795 "Golgi stack" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO;IMP

GO:0006810 "transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0015031 "protein transport" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0017157 "regulation of exocytosis" evidence=ISO

GO:0019905 "syntaxin binding" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042623 "ATPase activity, coupled" evidence=IMP

GO:0043008 "ATP-dependent protein binding" evidence=ISO

GO:0043198 "dendritic shaft" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q07590	SAV_SULAC	No assigned EC number	0.5142	0.5702	0.0884	yes	N/A
Q75JI3	NSF_DICDI	3, ., 6, ., 4, ., 6	0.6822	0.8842	0.1449	yes	N/A
P18708	NSF_CRIGR	3, ., 6, ., 4, ., 6	0.8035	0.8595	0.1397	yes	N/A
P46460	NSF_MOUSE	3, ., 6, ., 4, ., 6	0.8035	0.8595	0.1397	yes	N/A
P46461	NSF1_DROME	3, ., 6, ., 4, ., 6	0.8928	0.9090	0.1476	yes	N/A
Q9P7Q4	SEC18_SCHPO	No assigned EC number	0.7663	0.8842	0.1351	yes	N/A
Q5R410	NSF_PONAB	3, ., 6, ., 4, ., 6	0.8035	0.8595	0.1397	yes	N/A
Q9M0Y8	NSF_ARATH	3, ., 6, ., 4, ., 6	0.6826	0.8595	0.1401	yes	N/A
P18759	SEC18_YEAST	No assigned EC number	0.6964	0.9173	0.1464	yes	N/A
P46459	NSF_HUMAN	3, ., 6, ., 4, ., 6	0.8035	0.8595	0.1397	yes	N/A
Q9QUL6	NSF_RAT	3, ., 6, ., 4, ., 6	0.8035	0.8595	0.1397	yes	N/A
Q94392	NSF_CAEEL	3, ., 6, ., 4, ., 6	0.8018	0.9173	0.1347	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	121
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	9e-20
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	6e-19
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	4e-18
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	2e-17
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	3e-16
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	5e-16
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	6e-15
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	8e-15
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	2e-13
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	3e-12
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	3e-12
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	2e-10
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	7e-10
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	3e-09
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	1e-08
smart00382	148	smart00382, AAA, ATPases associated with a variety	2e-07
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	3e-07
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	4e-06
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	3e-05
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	3e-05
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	4e-05
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	4e-05
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	9e-05
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	1e-04
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	4e-04
TIGR00635	305	TIGR00635, ruvB, Holliday junction DNA helicase, R	4e-04
pfam00910	105	pfam00910, RNA_helicase, RNA helicase	5e-04
PRK05342	412	PRK05342, clpX, ATP-dependent protease ATP-binding	5e-04
TIGR02928	365	TIGR02928, TIGR02928, orc1/cdc6 family replication	6e-04
pfam05496	231	pfam05496, RuvB_N, Holliday junction DNA helicase	7e-04
pfam01078	207	pfam01078, Mg_chelatase, Magnesium chelatase, subu	0.001
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	0.001
PRK08116	268	PRK08116, PRK08116, hypothetical protein; Validate	0.002
pfam13207	114	pfam13207, AAA_17, AAA domain	0.002
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	0.002
PRK11331	459	PRK11331, PRK11331, 5-methylcytosine-specific rest	0.002
cd01120	165	cd01120, RecA-like_NTPases, RecA-like NTPases	0.002
COG1219	408	COG1219, ClpX, ATP-dependent protease Clp, ATPase	0.003
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.003
PRK13341	725	PRK13341, PRK13341, recombination factor protein R	0.004
PRK00411	394	PRK00411, cdc6, cell division control protein 6; R	0.004

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 82.9 bits (205), Expect = 9e-20
 Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGL+ E     + A  + +  PE+  +LG +  KG+LLYGPPGTGKTL+A+ +     +
Sbjct: 244 IGGLE-EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS 302

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
           R    V G ++L K+VGESE N+R LF  A +    +
Sbjct: 303 RFIS-VKGSELLSKWVGESEKNIRELFEKARKLAPSI 338

Length = 494

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 80.7 bits (199), Expect = 6e-19
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGL +    I R      +  PE+ E LG +  KG+LLYGPPGTGKTL+A+ +     A
Sbjct: 180 IGGLKEAKEKI-REMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
               I NGP+++ KY GESE  +R +F +AEE
Sbjct: 239 YFISI-NGPEIMSKYYGESEERLREIFKEAEE 269

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 73.8 bits (182), Expect = 4e-18
 Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 57  ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
           +LLYGPPGTGKT +A+ + + L A     ++G +++ KYVGESE  +R LF  A++ 
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKELGAP-FIEISGSELVSKYVGESEKRLRELFEAAKKL 56

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 4/104 (3%)

Query: 11  SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLM 70
            P   +    IGGLD++   I R      +  PE+ E+LG    KG+LLYGPPGTGKTL+
Sbjct: 145 KPDVTYE--DIGGLDEQIQEI-REVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLL 201

Query: 71  ARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
           A+ +    +A   ++V G +++ KY+GE    VR LF  A E+ 
Sbjct: 202 AKAVANQTDATFIRVV-GSELVQKYIGEGARLVRELFELAREKA 244

Length = 406

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 10/101 (9%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGL  +   I R A       PE+  + G +  KG+LLYGPPG GKTL+A+ +   L A
Sbjct: 184 IGGLGSQIEQI-RDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAVANSLAA 242

Query: 81  R-------EPKIVN--GPQVLDKYVGESEANVRRLFADAEE 112
           R       +   +N  GP++L+KYVGE+E  +R +F  A E
Sbjct: 243 RIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRARE 283

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 72.1 bits (177), Expect = 5e-16
 Identities = 44/113 (38%), Positives = 68/113 (60%), Gaps = 9/113 (7%)

Query: 1   MEVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLY 60
           MEV+ R     P+  +    IGGL+++   I R A    +  PE+ E++G +  KG+LLY
Sbjct: 111 MEVEER-----PNVSYED--IGGLEEQIREI-REAVELPLKHPELFEEVGIEPPKGVLLY 162

Query: 61  GPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
           GPPGTGKTL+A+ +    NA   ++V G +++ KY+GE    VR +F  A+E+
Sbjct: 163 GPPGTGKTLLAKAVAHETNATFIRVV-GSELVRKYIGEGARLVREIFELAKEK 214

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 69.1 bits (170), Expect = 6e-15
 Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 9/114 (7%)

Query: 1   MEVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLY 60
           MEV     I SP+  +    IGGL+++   + R A    +  PE+ E++G +  KG+LLY
Sbjct: 120 MEV-----IESPNVTYED--IGGLEEQIREV-REAVELPLKKPELFEEVGIEPPKGVLLY 171

Query: 61  GPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
           GPPGTGKTL+A+ +    NA   ++V G +++ K++GE    VR LF  A E+ 
Sbjct: 172 GPPGTGKTLLAKAVAHETNATFIRVV-GSELVQKFIGEGARLVRELFELAREKA 224

Length = 389

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 68.8 bits (168), Expect = 8e-15
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGL+ E     R A    +  PE+ E++G +  KG+LL+GPPGTGKTL+A+ +     A
Sbjct: 455 IGGLE-EVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA 513

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
                V GP++L K+VGESE  +R +F  A +
Sbjct: 514 NFIA-VRGPEILSKWVGESEKAIREIFRKARQ 544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 2/92 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGL+++   I + A    +  PE+ + +G +  KG++LYGPPGTGKTL+A+ +    +A
Sbjct: 185 IGGLEQQIQEI-KEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA 243

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
              ++V G +++ KY+G+    VR LF  AEE
Sbjct: 244 TFLRVV-GSELIQKYLGDGPKLVRELFRVAEE 274

Length = 438

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
           PE+ ++LG +  KG+LL+GPPGTGKTL+AR +       E   +NGP++L KYVGESE  
Sbjct: 7   PELFKKLGIEPPKGVLLHGPPGTGKTLLARALAN--EGAEFLSINGPEILSKYVGESELR 64

Query: 103 VRRLFADAEEEEKRV 117
           +R LF +AE+    +
Sbjct: 65  LRELFEEAEKLAPSI 79

Length = 494

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 61.3 bits (149), Expect = 3e-12
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGLD +   I R A    +  PE+ EQ+G    +G+LLYGPPGTGKT++A+ +     A
Sbjct: 147 IGGLDIQKQEI-REAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA 205

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
              ++V G + + KY+GE    VR +F  A E
Sbjct: 206 TFIRVV-GSEFVQKYLGEGPRMVRDVFRLARE 236

Length = 398

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI--VNGPQVLDKYVGESEANVRRLFADAEE 112
           K +LLYGPPGTGKT +AR I   L         +N   +L+  V         +    E 
Sbjct: 20  KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79

Query: 113 EEKR 116
            EK 
Sbjct: 80  AEKA 83

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 54.7 bits (132), Expect = 7e-10
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 11/96 (11%)

Query: 21  IGGLD---KEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQM 77
           I G++   +EF  +      S +  PE    +G +  KG+LL GPPGTGKTL+A+ I   
Sbjct: 185 IAGIEEAKEEFEEV-----VSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG- 238

Query: 78  LNAREPKI-VNGPQVLDKYVGESEANVRRLFADAEE 112
             A  P   ++G + ++ +VG   A VR LF  A+E
Sbjct: 239 -EAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKE 273

Length = 638

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEANVRRLFADAEE 112
           K +L YGPPGTGKT+MA+ +        P + V   +++ ++VG+    +  L+  A +
Sbjct: 152 KNVLFYGPPGTGKTMMAKALANEAKV--PLLLVKATELIGEHVGDGARRIHELYERARK 208

Length = 368

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 9/74 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P    +LG +  KG+LL GPPGTGKTL+A+ +     A E  +    ++G   ++ +VG 
Sbjct: 77  PSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAV-----AGEAGVPFFSISGSDFVEMFVGV 131

Query: 99  SEANVRRLFADAEE 112
             + VR LF  A++
Sbjct: 132 GASRVRDLFEQAKK 145

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIV----------------NGPQVLDKYVGE 98
           + IL+ GPPG+GKT +AR + + L      ++                       K  G 
Sbjct: 3   EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGS 62

Query: 99  SEANVRRLFADAEEEEKRV 117
            E  +R   A A + +  V
Sbjct: 63  GELRLRLALALARKLKPDV 81

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 9/74 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P   ++LG +  KG+L+ GPPGTGKTL+A+ I     A E K+    ++G   ++ +VG 
Sbjct: 174 PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI-----AGEAKVPFFTISGSDFVEMFVGV 228

Query: 99  SEANVRRLFADAEE 112
             + VR +F  A++
Sbjct: 229 GASRVRDMFEQAKK 242

Length = 644

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P+  + LG +  KG+LL GPPGTGKTL+A+ +     A E  +    ++G   ++ +VG 
Sbjct: 172 PKKYQALGAKIPKGVLLVGPPGTGKTLLAKAV-----AGEAGVPFFSISGSDFVEMFVGV 226

Query: 99  SEANVRRLFADA 110
             + VR LF  A
Sbjct: 227 GASRVRDLFEQA 238

Length = 596

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 41.4 bits (98), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94
          +LL+GPPG GKT +A  I   L     KI +GP  L+K
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGVN-LKITSGP-ALEK 90

Length = 332

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 41.2 bits (98), Expect = 3e-05
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 13/52 (25%)

Query: 30 AIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR 81
             RR   +                  ++L+GPPGTGKT +AR I    +A 
Sbjct: 25 KPLRRMIEAGRLSS-------------MILWGPPGTGKTTLARIIAGATDAP 63

Length = 413

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94
          +LLYGPPG GKT +A  I   +     +I +GP  L+K
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVN-IRITSGP-ALEK 89

Length = 328

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 6/57 (10%)

Query: 52  QHVKGILLYGPPGTGKTLMARQIGQMLNA----REPKI--VNGPQVLDKYVGESEAN 102
           Q    +L  GPPGTGKT +AR + ++       R+P +  V+   ++ +Y+GESEA 
Sbjct: 310 QTSNHMLFAGPPGTGKTTIARVVAKIYCGLGVLRKPLVREVSRADLIGQYIGESEAK 366

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 16/70 (22%)

Query: 28 FTAIFRRAFASRVFPPEVVEQLGCQHV---KGIL-------------LYGPPGTGKTLMA 71
              FR   A R+ P  + E +G +H+      L             L+GPPGTGKT +A
Sbjct: 6  SDNEFRMPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65

Query: 72 RQIGQMLNAR 81
          R I    NA 
Sbjct: 66 RLIAGTTNAA 75

Length = 436

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ 90
          G+LL GPPGTGK+ +A ++   L+ R    V   +
Sbjct: 1  GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTR 35

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREP-KIVNGPQVLDKYVGESEA---NVRRLFADA 110
           + +L+ GPPGTGKT +A  I + L    P   ++G +V    + ++EA     R+     
Sbjct: 51  RAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYSLEMKKTEALTQAFRKAIGVR 110

Query: 111 EEEEKRV 117
            +EEK V
Sbjct: 111 IKEEKEV 117

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94
          +LLYGPPG GKT +A  I   +     KI +GP  L+K
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMGV-NLKITSGP-ALEK 68

All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305

>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 57 ILLYGPPGTGKTLMARQIGQML 78
          I LYGPPG GK+ +A+ + + L
Sbjct: 1  IWLYGPPGCGKSTLAKYLARAL 22

This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. Length = 105

>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 12/23 (52%), Positives = 19/23 (82%)

Query: 57  ILLYGPPGTGKTLMARQIGQMLN 79
           ILL GP G+GKTL+A+ + ++L+
Sbjct: 111 ILLIGPTGSGKTLLAQTLARILD 133

Length = 412

>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNA 80
          + +YG  GTGKT + + + + L  
Sbjct: 43 VFIYGKTGTGKTAVTKYVMKELEE 66

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other [DNA metabolism, DNA replication, recombination, and repair]. Length = 365

>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK 94
          HV   LLYGPPG GKT +A  I   +     +I +GP  L+K
Sbjct: 52 HV---LLYGPPGLGKTTLANIIANEMGV-NIRITSGP-ALEK 88

The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231

>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 9/18 (50%), Positives = 17/18 (94%)

Query: 57 ILLYGPPGTGKTLMARQI 74
          +L+ GPPG+GKT++A+++
Sbjct: 25 LLMIGPPGSGKTMLAKRL 42

Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKI 85
          +LL GPPG GKTL+AR + + L     +I
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRI 74

Length = 329

>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 56  GILLYGPPGTGKTLMARQIGQMLNARE--PKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
           G+LL+G  GTGKT +A  I   L  +      VN PQ+L++        ++  +  + +E
Sbjct: 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR--------IKSTYKSSGKE 167

Query: 114 EK 115
           ++
Sbjct: 168 DE 169

Length = 268

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
          IL+ GPPG+GK+ +A+++ + L   
Sbjct: 2  ILITGPPGSGKSTLAKKLAEKLGIP 26

Length = 114

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEA---NVRR 105
           +GIL+ GPPGTGKT +A  I + L    P + ++G ++    V ++EA    +RR
Sbjct: 66  RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQALRR 120

Length = 450

>gnl|CDD|183088 PRK11331, PRK11331, 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNA-REPKIVNGPQVLDKYVGE 98
           K I+L GPPG GKT +AR++  +L   + P+ VN  Q    Y  E
Sbjct: 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239

Length = 459

>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 57  ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKR 116
           IL++GP G+GKT +A Q+   +  +  K+V        YV   E           E  K 
Sbjct: 2   ILVFGPTGSGKTTLALQLALNIATKGGKVV--------YVDIEEEIEELTERLIGESLKG 53

Query: 117 VSHKW 121
                
Sbjct: 54  ALDNL 58

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Length = 165

>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 13/23 (56%), Positives = 19/23 (82%)

Query: 57  ILLYGPPGTGKTLMARQIGQMLN 79
           ILL GP G+GKTL+A+ + ++LN
Sbjct: 100 ILLIGPTGSGKTLLAQTLAKILN 122

Length = 408

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 12/17 (70%), Positives = 14/17 (82%)

Query: 55 KGILLYGPPGTGKTLMA 71
          K +LLYGPPG GKT +A
Sbjct: 40 KALLLYGPPGVGKTSLA 56

Length = 482

>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 58 LLYGPPGTGKTLMARQIGQMLNAR 81
          +LYGPPG GKT +AR I     A 
Sbjct: 56 ILYGPPGVGKTTLARIIANHTRAH 79

Length = 725

>gnl|CDD|234751 PRK00411, cdc6, cell division control protein 6; Reviewed

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
          +L+YGPPGTGKT   +++ + L     K+V
Sbjct: 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVV 87

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.97
KOG0730|consensus	693		99.93
KOG0727|consensus	408		99.93
KOG0733|consensus	802		99.93
KOG0726|consensus	440		99.92
KOG0741|consensus	744		99.92
KOG0733|consensus	802		99.91
KOG0736|consensus	953		99.9
KOG0728|consensus	404		99.89
KOG0729|consensus	435		99.87
KOG0739|consensus	439		99.87
KOG0652|consensus	424		99.86
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.84
KOG0731|consensus	774		99.84
KOG0738|consensus	491		99.84
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.82
KOG0737|consensus	386		99.82
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.81
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.81
KOG0734|consensus	752		99.8
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.8
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.79
KOG0651|consensus	388		99.78
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.76
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.76
KOG0735|consensus	952		99.75
KOG0740|consensus	428		99.74
CHL00195	489	ycf46 Ycf46; Provisional	99.74
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.72
KOG0732|consensus	1080		99.72
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.72
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.69
KOG0730|consensus	693		99.68
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.64
CHL00176	638	ftsH cell division protein; Validated	99.64
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.45
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.43
CHL00181	287	cbbX CbbX; Provisional	99.43
CHL00206	2281	ycf2 Ycf2; Provisional	99.42
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.4
PF00004	132	AAA: ATPase family associated with various cellula	99.36
KOG0744|consensus	423		99.32
KOG0743|consensus	457		99.28
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.24
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.23
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.03
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.0
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.85
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.8
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.79
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.77
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	98.76
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	98.75
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	98.73
CHL00095	821	clpC Clp protease ATP binding subunit	98.72
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.72
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.69
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.67
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.67
KOG2028|consensus	554		98.67
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.66
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.64
smart00382	148	AAA ATPases associated with a variety of cellular	98.64
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.63
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.62
KOG0736|consensus	953		98.61
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	98.6
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.6
COG4559	259	ABC-type hemin transport system, ATPase component	98.57
KOG0741|consensus	744		98.57
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.56
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.56
KOG0742|consensus	630		98.55
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.54
KOG0989|consensus	346		98.54
PRK10865	857	protein disaggregation chaperone; Provisional	98.54
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.51
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	98.51
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.51
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.5
PRK13948	182	shikimate kinase; Provisional	98.49
PRK13947	171	shikimate kinase; Provisional	98.49
PRK13949	169	shikimate kinase; Provisional	98.49
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.48
PRK00625	173	shikimate kinase; Provisional	98.48
PRK00131	175	aroK shikimate kinase; Reviewed	98.48
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	98.48
PRK08118	167	topology modulation protein; Reviewed	98.48
PRK04195	482	replication factor C large subunit; Provisional	98.48
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.46
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.45
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.44
KOG0735|consensus	952		98.43
PRK13342	413	recombination factor protein RarA; Reviewed	98.42
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.42
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.41
PRK14532	188	adenylate kinase; Provisional	98.4
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.4
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.4
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.4
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.4
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.39
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.39
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.37
PLN03025	319	replication factor C subunit; Provisional	98.36
PRK07261	171	topology modulation protein; Provisional	98.36
PF07726	131	AAA_3: ATPase family associated with various cellu	98.35
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.35
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.34
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.34
KOG0745|consensus	564		98.33
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.33
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.32
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.32
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.32
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.32
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.31
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.31
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.3
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.3
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.3
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.3
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	98.3
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.29
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.29
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.29
PRK13341	725	recombination factor protein RarA/unknown domain f	98.29
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.28
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.28
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.28
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.28
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.28
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.28
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.28
KOG0991|consensus	333		98.28
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.27
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.26
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.26
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	98.26
PRK03839	180	putative kinase; Provisional	98.26
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.26
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.26
COG0606	490	Predicted ATPase with chaperone activity [Posttran	98.25
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.25
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.25
PHA02244	383	ATPase-like protein	98.25
PRK14530	215	adenylate kinase; Provisional	98.25
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.24
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.24
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.24
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.24
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.24
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.23
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.23
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.23
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.23
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.23
PRK05057	172	aroK shikimate kinase I; Reviewed	98.22
PRK12402	337	replication factor C small subunit 2; Reviewed	98.22
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.22
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.22
PRK10908	222	cell division protein FtsE; Provisional	98.22
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.22
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	98.22
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.21
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.21
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.21
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.21
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.21
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.21
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.21
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.2
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	98.2
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.2
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.2
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.2
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.2
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.19
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.19
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.19
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.19
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.18
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.18
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.18
PRK14531	183	adenylate kinase; Provisional	98.18
PHA02544	316	44 clamp loader, small subunit; Provisional	98.18
KOG2004|consensus	906		98.18
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.18
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.18
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.18
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.18
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.18
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.17
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.17
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.17
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.17
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.17
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.17
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.16
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.16
cd03246	173	ABCC_Protease_Secretion This family represents the	98.16
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.16
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.16
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.16
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.16
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.16
PRK06547	172	hypothetical protein; Provisional	98.16
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.16
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.16
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.15
PRK13946	184	shikimate kinase; Provisional	98.15
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.15
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.15
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.15
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.15
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.15
COG1123	539	ATPase components of various ABC-type transport sy	98.15
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.14
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.14
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.14
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.14
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.14
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.14
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.14
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.13
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.13
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.13
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.13
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.13
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.13
PRK06893	229	DNA replication initiation factor; Validated	98.13
PRK06217	183	hypothetical protein; Validated	98.13
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.13
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.13
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.12
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.12
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.12
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.12
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.12
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.12
PRK13765	637	ATP-dependent protease Lon; Provisional	98.12
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.12
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.12
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.12
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.12
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.12
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.12
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.12
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.12
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.12
PRK06620	214	hypothetical protein; Validated	98.12
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.12
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.11
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.11
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.11
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.11
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.11
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.11
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.11
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	98.11
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.11
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.11
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.11
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.11
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.1
PRK08084	235	DNA replication initiation factor; Provisional	98.1
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.1
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.1
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.1
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.1
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.1
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.1
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.1
PRK15455	644	PrkA family serine protein kinase; Provisional	98.1
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.1
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.1
PRK14526	211	adenylate kinase; Provisional	98.1
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.1
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.1
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.1
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.09
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.09
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.09
PTZ00088	229	adenylate kinase 1; Provisional	98.09
PRK14527	191	adenylate kinase; Provisional	98.09
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.09
COG0714	329	MoxR-like ATPases [General function prediction onl	98.09
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.09
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.09
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.08
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.08
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.08
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.08
PLN02200	234	adenylate kinase family protein	98.08
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.08
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.08
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.08
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.08
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.07
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.07
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.07
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.07
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.07
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.07
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.07
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.06
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.06
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.06
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.06
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.06
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.06
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.06
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.06
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.06
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.06
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.06
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.05
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.05
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.05
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.05
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.05
KOG1969|consensus	877		98.05
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	98.05
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.05
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.05
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.05
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.05
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.05
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.05
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.05
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.05
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.04
PRK06526	254	transposase; Provisional	98.04
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.04
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.04
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.04
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.04
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.04
PRK06762	166	hypothetical protein; Provisional	98.04
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.04
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.03
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.03
PRK02496	184	adk adenylate kinase; Provisional	98.03
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.03
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.02
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.02
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.02
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.02
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.02
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.02
KOG1942|consensus	456		98.02
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.01
PRK14528	186	adenylate kinase; Provisional	98.01
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.01
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.01
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.01
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.01
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.01
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.01
COG4987	573	CydC ABC-type transport system involved in cytochr	98.01
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.0
PRK05480	209	uridine/cytidine kinase; Provisional	98.0
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.0
PHA00729	226	NTP-binding motif containing protein	98.0
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.0
PLN02674	244	adenylate kinase	98.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.99
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.99
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	97.99
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.99
PRK12377	248	putative replication protein; Provisional	97.99
KOG3347|consensus	176		97.99
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	97.99
PRK13531	498	regulatory ATPase RavA; Provisional	97.99
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.99
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.99
PRK06921	266	hypothetical protein; Provisional	97.99
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.99
cd03299	235	ABC_ModC_like Archeal protein closely related to M	97.99
PRK03731	171	aroL shikimate kinase II; Reviewed	97.98
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.98
PRK05541	176	adenylylsulfate kinase; Provisional	97.98
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.98
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.98
PRK00279	215	adk adenylate kinase; Reviewed	97.98
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	97.98
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.98
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.98
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	97.98
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	97.98
PRK09183	259	transposase/IS protein; Provisional	97.97
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.97
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	97.97
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	97.97
PRK08181	269	transposase; Validated	97.97
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	97.96
PRK08233	182	hypothetical protein; Provisional	97.96
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.96
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	97.96
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.96
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.96
COG0410	237	LivF ABC-type branched-chain amino acid transport	97.96
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	97.96
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.95
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.95
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	97.95
PRK00300	205	gmk guanylate kinase; Provisional	97.95
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	97.94
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	97.94
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	97.94
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.94
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	97.94
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.94
PRK14529	223	adenylate kinase; Provisional	97.94
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.94
PRK09825	176	idnK D-gluconate kinase; Provisional	97.94
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.94
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	97.94
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	97.94
PRK13975	196	thymidylate kinase; Provisional	97.93
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.93
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	97.93
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.93
PLN02199	303	shikimate kinase	97.93
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	97.93
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.93
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	97.92
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.92
COG0411	250	LivG ABC-type branched-chain amino acid transport	97.91
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	97.91
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.91
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.91
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.91
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.91
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.91
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.9
COG4178	604	ABC-type uncharacterized transport system, permeas	97.9
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.9
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.9
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	97.9
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.9
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	97.9
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.9
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	97.89
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.89
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.89
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.88
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	97.88
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.88
PRK08939	306	primosomal protein DnaI; Reviewed	97.88
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.88
PRK10938	490	putative molybdenum transport ATP-binding protein	97.88
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	97.88
PRK10522	547	multidrug transporter membrane component/ATP-bindi	97.88
PRK08116	268	hypothetical protein; Validated	97.88
PRK04182	180	cytidylate kinase; Provisional	97.88
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.88
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.88
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.87
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.87
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	97.87
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	97.86
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.86
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	97.86
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.86
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.86
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.86
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	97.86
COG0488	530	Uup ATPase components of ABC transporters with dup	97.86
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.86
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.86
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.86
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.86
PRK15064	530	ABC transporter ATP-binding protein; Provisional	97.86
PRK06835	329	DNA replication protein DnaC; Validated	97.85
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.85
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.85
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	97.85
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.85
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.85
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	97.85
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.84
PRK11147	635	ABC transporter ATPase component; Reviewed	97.84
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.84
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	97.84
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.84
PRK10261	623	glutathione transporter ATP-binding protein; Provi	97.84
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.84
KOG0060|consensus	659		97.84
KOG0058|consensus	716		97.84

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-30  Score=188.60  Aligned_cols=105  Identities=39%  Similarity=0.685  Sum_probs=99.4

Q ss_pred             ccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632           9 IISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus         9 ~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      -..|++.|+  ||||+++|++++ ++.+++|+.+|++|+++|+.||+|||||||||||||+||||+|++.+..|+. +.+
T Consensus       143 ~e~PdvtY~--dIGGL~~Qi~Ei-rE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIr-vvg  218 (406)
T COG1222         143 EEKPDVTYE--DIGGLDEQIQEI-REVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIR-VVG  218 (406)
T ss_pred             ccCCCCChh--hccCHHHHHHHH-HHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEE-ecc
Confidence            356788888  599999999999 9999999999999999999999999999999999999999999999999877 789


Q ss_pred             cccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          89 PQVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        89 ~~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++++.+|.|+..+.+|++|+.|++++|++
T Consensus       219 SElVqKYiGEGaRlVRelF~lArekaPsI  247 (406)
T COG1222         219 SELVQKYIGEGARLVRELFELAREKAPSI  247 (406)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhcCCeE
Confidence            99999999999999999999999999875

>KOG0730|consensus

Probab=99.93  E-value=1.5e-26  Score=177.38  Aligned_cols=104  Identities=35%  Similarity=0.629  Sum_probs=97.2

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|.++|+  ||||+++.++++ ++.+.+++.+++.|.++|+++++|||||||||||||++||++|++.+.+|+. +.+.
T Consensus       427 e~p~v~W~--dIGGlE~lK~el-q~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls-vkgp  502 (693)
T KOG0730|consen  427 EMPNVSWD--DIGGLEELKREL-QQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS-VKGP  502 (693)
T ss_pred             cCCCCChh--hccCHHHHHHHH-HHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee-ccCH
Confidence            44666666  699999999998 9999999999999999999999999999999999999999999999999887 8999


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|++|+.++++|+.||+.+|.+
T Consensus       503 EL~sk~vGeSEr~ir~iF~kAR~~aP~I  530 (693)
T KOG0730|consen  503 ELFSKYVGESERAIREVFRKARQVAPCI  530 (693)
T ss_pred             HHHHHhcCchHHHHHHHHHHHhhcCCeE
Confidence            9999999999999999999999998854

>KOG0727|consensus

Probab=99.93  E-value=4.2e-26  Score=159.99  Aligned_cols=104  Identities=35%  Similarity=0.616  Sum_probs=97.4

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|.  ||||+|-+++++ ++.++.|+.+.++|+++|++||+|++++||||||||++++++|+.....|+. +.++
T Consensus       148 ekpdvsy~--diggld~qkqei-reavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fir-vvgs  223 (408)
T KOG0727|consen  148 EKPDVSYA--DIGGLDVQKQEI-REAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIR-VVGS  223 (408)
T ss_pred             CCCCcccc--ccccchhhHHHH-HHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheee-eccH
Confidence            45667776  699999999999 9999999999999999999999999999999999999999999999998777 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +++.+|.|+..+.+|.+|..|++++|++
T Consensus       224 efvqkylgegprmvrdvfrlakenapsi  251 (408)
T KOG0727|consen  224 EFVQKYLGEGPRMVRDVFRLAKENAPSI  251 (408)
T ss_pred             HHHHHHhccCcHHHHHHHHHHhccCCcE
Confidence            9999999999999999999999999875

>KOG0733|consensus

Probab=99.93  E-value=7.4e-26  Score=172.72  Aligned_cols=104  Identities=36%  Similarity=0.625  Sum_probs=97.1

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||||++++..++ ...+.+|+.+++.|+.+|+++|.||||+||||||||.+|||+|++.+.+|+. +.++
T Consensus       504 tVPdVtW~--dIGaL~~vR~eL-~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis-VKGP  579 (802)
T KOG0733|consen  504 TVPDVTWD--DIGALEEVRLEL-NMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS-VKGP  579 (802)
T ss_pred             ecCCCChh--hcccHHHHHHHH-HHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEe-ecCH
Confidence            44666666  699999999998 9999999999999999999999999999999999999999999999999887 8999


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +++.+|+||+|+.+|.+|+.||..+|-|
T Consensus       580 ELlNkYVGESErAVR~vFqRAR~saPCV  607 (802)
T KOG0733|consen  580 ELLNKYVGESERAVRQVFQRARASAPCV  607 (802)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhcCCCeE
Confidence            9999999999999999999999998754

>KOG0726|consensus

Probab=99.92  E-value=3.2e-25  Score=157.89  Aligned_cols=102  Identities=35%  Similarity=0.650  Sum_probs=96.0

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      |...|.  ||||++++++++ ++.+++|+.||++|+.+|+.+|+||+|||+||||||.||+|+|+.....|+. +-++++
T Consensus       180 P~Ety~--diGGle~QiQEi-KEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlR-vvGseL  255 (440)
T KOG0726|consen  180 PQETYA--DIGGLESQIQEI-KESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLR-VVGSEL  255 (440)
T ss_pred             chhhhc--ccccHHHHHHHH-HHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhh-hhhHHH
Confidence            444555  699999999999 9999999999999999999999999999999999999999999999999887 679999


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +.+|.|+..+.+|++|+.|.+++|++
T Consensus       256 iQkylGdGpklvRqlF~vA~e~apSI  281 (440)
T KOG0726|consen  256 IQKYLGDGPKLVRELFRVAEEHAPSI  281 (440)
T ss_pred             HHHHhccchHHHHHHHHHHHhcCCce
Confidence            99999999999999999999999975

>KOG0741|consensus

Probab=99.92  E-value=1.5e-24  Score=163.77  Aligned_cols=114  Identities=79%  Similarity=1.309  Sum_probs=109.0

Q ss_pred             CccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632           6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus         6 ~~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...+.+|+|+|+++.|||||+....++++.+.....+|++.+++|+...+|++|+||||||||.+||.|...++.....+
T Consensus       208 ~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKI  287 (744)
T KOG0741|consen  208 SNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKI  287 (744)
T ss_pred             hccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             ecCcccchhhhchhHHHHHHHHHHHHHHHHhhhc
Q psy3632          86 VNGPQVLDKYVGESEANVRRLFADAEEEEKRVSH  119 (121)
Q Consensus        86 ~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~~~  119 (121)
                      +++++++.+|+|++|.++|.+|.+|++..++.+.
T Consensus       288 VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~  321 (744)
T KOG0741|consen  288 VNGPEILNKYVGESEENVRKLFADAEEEQRRLGA  321 (744)
T ss_pred             cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCc
Confidence            9999999999999999999999999999887654

>KOG0733|consensus

Probab=99.91  E-value=6.2e-25  Score=167.72  Aligned_cols=100  Identities=34%  Similarity=0.606  Sum_probs=91.1

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .+.|+  +|||+|+++.++ .+.+.. +.+|+.|..+|+.|++|+|||||||||||+||+++|++++.+++. +...+++
T Consensus       186 nv~f~--diGG~d~~~~el-~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~-isApeiv  260 (802)
T KOG0733|consen  186 NVSFS--DIGGLDKTLAEL-CELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLS-ISAPEIV  260 (802)
T ss_pred             Ccchh--hccChHHHHHHH-HHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEe-ecchhhh
Confidence            45555  699999999998 555555 889999999999999999999999999999999999999999887 8899999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          93 DKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        93 ~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +++.|++|++||++|++|..++|.+
T Consensus       261 SGvSGESEkkiRelF~~A~~~aPci  285 (802)
T KOG0733|consen  261 SGVSGESEKKIRELFDQAKSNAPCI  285 (802)
T ss_pred             cccCcccHHHHHHHHHHHhccCCeE
Confidence            9999999999999999999988753

>KOG0736|consensus

Probab=99.90  E-value=2.4e-24  Score=167.55  Aligned_cols=102  Identities=39%  Similarity=0.644  Sum_probs=92.4

Q ss_pred             cccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632           8 SIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus         8 ~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      ++.+..|+    ||||+++.+.++ .+.+..|+.|++++.. |++.+.||+||||||||||.+|||+|.++...|+. +.
T Consensus       665 KIPnV~Wd----DVGGLeevK~eI-ldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlS-VK  737 (953)
T KOG0736|consen  665 KIPNVSWD----DVGGLEEVKTEI-LDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLS-VK  737 (953)
T ss_pred             CCCccchh----cccCHHHHHHHH-HHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEe-ec
Confidence            34444444    799999999998 8999999999999985 78888999999999999999999999999999888 89


Q ss_pred             CcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          88 GPQVLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      +++++-+|+|++|+++|++|+.||+.+|=
T Consensus       738 GPELLNMYVGqSE~NVR~VFerAR~A~PC  766 (953)
T KOG0736|consen  738 GPELLNMYVGQSEENVREVFERARSAAPC  766 (953)
T ss_pred             CHHHHHHHhcchHHHHHHHHHHhhccCCe
Confidence            99999999999999999999999998763

>KOG0728|consensus

Probab=99.89  E-value=2.2e-23  Score=146.23  Aligned_cols=95  Identities=43%  Similarity=0.748  Sum_probs=91.7

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhH
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESE  100 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~  100 (121)
                      +||+|.+++++ ++.+++|..+|++|+.+|+..|+|++|+||||+|||.+|+++|......++. +++++++.+|.|+..
T Consensus       149 iGgLd~QIkeI-kEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~fir-vsgselvqk~igegs  226 (404)
T KOG0728|consen  149 IGGLDKQIKEI-KEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR-VSGSELVQKYIGEGS  226 (404)
T ss_pred             hccHHHHHHHH-HHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEE-echHHHHHHHhhhhH
Confidence            89999999999 9999999999999999999999999999999999999999999999988766 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy3632         101 ANVRRLFADAEEEEKRV  117 (121)
Q Consensus       101 ~~i~~~f~~a~~~~~~~  117 (121)
                      +.+|++|-+||+++|++
T Consensus       227 rmvrelfvmarehapsi  243 (404)
T KOG0728|consen  227 RMVRELFVMAREHAPSI  243 (404)
T ss_pred             HHHHHHHHHHHhcCCce
Confidence            99999999999999975

>KOG0729|consensus

Probab=99.87  E-value=3.5e-22  Score=141.26  Aligned_cols=100  Identities=37%  Similarity=0.640  Sum_probs=92.9

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  |+||-.+++..+ ++.++.++.+|+.|-++|+++|+|++++||||||||.+||++|+..+..|+. +.++
T Consensus       170 ekpdvty~--dvggckeqiekl-revve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfir-vigs  245 (435)
T KOG0729|consen  170 EKPDVTYS--DVGGCKEQIEKL-REVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIR-VIGS  245 (435)
T ss_pred             cCCCcccc--cccchHHHHHHH-HHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEe-ehhH
Confidence            34666666  699999999998 9999999999999999999999999999999999999999999999998776 6799


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHH
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      +++.+|+|+..+.+|++|++||..
T Consensus       246 elvqkyvgegarmvrelf~martk  269 (435)
T KOG0729|consen  246 ELVQKYVGEGARMVRELFEMARTK  269 (435)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhccc
Confidence            999999999999999999999865

>KOG0739|consensus

Probab=99.87  E-value=3e-22  Score=143.13  Aligned_cols=106  Identities=29%  Similarity=0.501  Sum_probs=95.0

Q ss_pred             ccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632           7 QSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus         7 ~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .-+..|.+.|+  |+.||+..++.+ ++.+.+|+.-|++|.. ...|=+|+||+||||||||.||+++|.+.+..|+. +
T Consensus       123 Iv~EKPNVkWs--DVAGLE~AKeAL-KEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFS-v  197 (439)
T KOG0739|consen  123 IVREKPNVKWS--DVAGLEGAKEAL-KEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFS-V  197 (439)
T ss_pred             hhccCCCCchh--hhccchhHHHHH-HhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEE-e
Confidence            34567888888  599999999988 9999999999999885 33556789999999999999999999999988877 7


Q ss_pred             cCcccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          87 NGPQVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        87 ~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +.++++++|.|++++.++.+|++||++.|++
T Consensus       198 SSSDLvSKWmGESEkLVknLFemARe~kPSI  228 (439)
T KOG0739|consen  198 SSSDLVSKWMGESEKLVKNLFEMARENKPSI  228 (439)
T ss_pred             ehHHHHHHHhccHHHHHHHHHHHHHhcCCcE
Confidence            8999999999999999999999999999875

>KOG0652|consensus

Probab=99.86  E-value=6.3e-22  Score=139.64  Aligned_cols=104  Identities=39%  Similarity=0.640  Sum_probs=96.8

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|+..|+  ||||++++++++ .+.+.+++.+++.|+++|+.+|+|++++||||||||.+||+-|.+.+..|.. +.++
T Consensus       164 ekPtE~Ys--DiGGldkQIqEL-vEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLK-LAgP  239 (424)
T KOG0652|consen  164 EKPTEQYS--DIGGLDKQIQEL-VEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLK-LAGP  239 (424)
T ss_pred             cCCccccc--ccccHHHHHHHH-HHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHH-hcch
Confidence            45666777  599999999998 8899999999999999999999999999999999999999999999999887 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +++..|.|+..+.+|..|..|.+.+|.+
T Consensus       240 QLVQMfIGdGAkLVRDAFaLAKEkaP~I  267 (424)
T KOG0652|consen  240 QLVQMFIGDGAKLVRDAFALAKEKAPTI  267 (424)
T ss_pred             HHHhhhhcchHHHHHHHHHHhhccCCeE
Confidence            9999999999999999999999998864

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.84  E-value=4e-21  Score=143.55  Aligned_cols=103  Identities=38%  Similarity=0.640  Sum_probs=93.5

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||+|++.+++++ ++.+..++.+++.|+++|+.++++++|+||||||||++++++|+.++.+++. +.+.
T Consensus       138 ~~p~v~~~--digGl~~~k~~l-~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~-i~~s  213 (398)
T PTZ00454        138 EKPDVTYS--DIGGLDIQKQEI-REAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR-VVGS  213 (398)
T ss_pred             CCCCCCHH--HcCCHHHHHHHH-HHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE-EehH
Confidence            45667777  699999999999 9999999999999999999999999999999999999999999999988766 5677


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      ++...|.|++++.++++|+.|+..+|.
T Consensus       214 ~l~~k~~ge~~~~lr~lf~~A~~~~P~  240 (398)
T PTZ00454        214 EFVQKYLGEGPRMVRDVFRLARENAPS  240 (398)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHhcCCe
Confidence            888899999999999999999887664

>KOG0731|consensus

Probab=99.84  E-value=3.8e-21  Score=150.76  Aligned_cols=100  Identities=32%  Similarity=0.559  Sum_probs=91.8

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .+.|.  |+.|.|+++.++ .| +..++.+|+.|.++|...|+|+||+||||||||+||||+|++.+.+|+. +++++++
T Consensus       307 ~V~Fk--DVAG~deAK~El-~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~s-vSGSEFv  381 (774)
T KOG0731|consen  307 GVKFK--DVAGVDEAKEEL-ME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-VSGSEFV  381 (774)
T ss_pred             CCccc--cccCcHHHHHHH-HH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceee-echHHHH
Confidence            35566  699999999998 54 4578899999999999999999999999999999999999999999887 8999999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          93 DKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        93 ~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ..+.|-...++|.+|+.|+.++|.+
T Consensus       382 E~~~g~~asrvr~lf~~ar~~aP~i  406 (774)
T KOG0731|consen  382 EMFVGVGASRVRDLFPLARKNAPSI  406 (774)
T ss_pred             HHhcccchHHHHHHHHHhhccCCeE
Confidence            9999999999999999999999864

>KOG0738|consensus

Probab=99.84  E-value=6.9e-21  Score=139.65  Aligned_cols=102  Identities=30%  Similarity=0.494  Sum_probs=90.8

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      +|.+.|+  ||.|+.+.++-+ ++.+..|+.-|+.|+.+. +|=+|||++||||||||+||+|+|.+++..|+. ++.+.
T Consensus       206 np~ikW~--DIagl~~AK~lL-~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFN-VSsst  280 (491)
T KOG0738|consen  206 NPNIKWD--DIAGLHEAKKLL-KEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFN-VSSST  280 (491)
T ss_pred             CCCcChH--hhcchHHHHHHH-HHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEE-echhh
Confidence            4455555  699999987765 999999999999999765 555789999999999999999999999999877 78999


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +.++|=|++|+.+|-+|++||..+|+.
T Consensus       281 ltSKwRGeSEKlvRlLFemARfyAPSt  307 (491)
T KOG0738|consen  281 LTSKWRGESEKLVRLLFEMARFYAPST  307 (491)
T ss_pred             hhhhhccchHHHHHHHHHHHHHhCCce
Confidence            999999999999999999999999874

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=1.7e-20  Score=143.53  Aligned_cols=104  Identities=38%  Similarity=0.666  Sum_probs=93.7

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..+.+.|+  +++|++..+..+ ++.+.+++..++.+...++.++.|+||+||||||||++|+++|.+++.+++. +..+
T Consensus       235 ~~~~v~~~--diggl~~~k~~l-~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~-v~~~  310 (494)
T COG0464         235 EDEDVTLD--DIGGLEEAKEEL-KEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS-VKGS  310 (494)
T ss_pred             CCCCccee--hhhcHHHHHHHH-HHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE-eeCH
Confidence            44555555  699999988888 9999999999999999999999999999999999999999999999999877 5666


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|+++++++++|+.|++.+|.+
T Consensus       311 ~l~sk~vGesek~ir~~F~~A~~~~p~i  338 (494)
T COG0464         311 ELLSKWVGESEKNIRELFEKARKLAPSI  338 (494)
T ss_pred             HHhccccchHHHHHHHHHHHHHcCCCcE
Confidence            9999999999999999999999887654

>KOG0737|consensus

Probab=99.82  E-value=3.7e-20  Score=134.81  Aligned_cols=103  Identities=30%  Similarity=0.461  Sum_probs=91.5

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhC-CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLG-CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~-~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +++.+..||+|++.+++++ ++.+..|++.|++|...+ +.+++||||+||||||||++|+++|++.+..++. +..+.+
T Consensus        86 ~I~v~f~DIggLe~v~~~L-~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn-v~~s~l  163 (386)
T KOG0737|consen   86 EIGVSFDDIGGLEEVKDAL-QELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN-VSVSNL  163 (386)
T ss_pred             hceeehhhccchHHHHHHH-HHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce-eecccc
Confidence            4555555899999999998 999999999999997644 4678899999999999999999999999999887 788999


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      .++|+|+.++.++.+|-.|.+-.|.+
T Consensus       164 t~KWfgE~eKlv~AvFslAsKl~P~i  189 (386)
T KOG0737|consen  164 TSKWFGEAQKLVKAVFSLASKLQPSI  189 (386)
T ss_pred             chhhHHHHHHHHHHHHhhhhhcCcce
Confidence            99999999999999999999776653

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.81  E-value=5.3e-20  Score=138.74  Aligned_cols=102  Identities=36%  Similarity=0.675  Sum_probs=91.7

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|...|+  ||+|++++++++ ++.+..++.+++.|+.+++.++.+++|+||||||||++|+++|++++.+++. +.+++
T Consensus       177 ~p~~~~~--DIgGl~~qi~~l-~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~-V~~se  252 (438)
T PTZ00361        177 APLESYA--DIGGLEQQIQEI-KEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR-VVGSE  252 (438)
T ss_pred             CCCCCHH--HhcCHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE-Eecch
Confidence            3455666  699999999999 9999999999999999999999999999999999999999999999988766 67788


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      +...|.|+.++.++.+|+.|+...+.
T Consensus       253 L~~k~~Ge~~~~vr~lF~~A~~~~P~  278 (438)
T PTZ00361        253 LIQKYLGDGPKLVRELFRVAEENAPS  278 (438)
T ss_pred             hhhhhcchHHHHHHHHHHHHHhCCCc
Confidence            88999999999999999999887653

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.81  E-value=6.1e-20  Score=137.07  Aligned_cols=102  Identities=39%  Similarity=0.709  Sum_probs=92.0

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|++.|+  +|+|++++++++ ++.+..++.+++.++.+|+.++++++|+||||||||++|+++|..++.+++. +.+++
T Consensus       125 ~p~~~~~--di~Gl~~~~~~l-~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~-v~~~~  200 (389)
T PRK03992        125 SPNVTYE--DIGGLEEQIREV-REAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR-VVGSE  200 (389)
T ss_pred             CCCCCHH--HhCCcHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE-eehHH
Confidence            4556665  699999999998 9999999999999999999999999999999999999999999999988665 67888


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      +...|.|++++.++.+|+.|+.+.+.
T Consensus       201 l~~~~~g~~~~~i~~~f~~a~~~~p~  226 (389)
T PRK03992        201 LVQKFIGEGARLVRELFELAREKAPS  226 (389)
T ss_pred             HhHhhccchHHHHHHHHHHHHhcCCe
Confidence            88999999999999999999886654

>KOG0734|consensus

Probab=99.80  E-value=8e-20  Score=138.48  Aligned_cols=100  Identities=30%  Similarity=0.489  Sum_probs=90.9

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .+.|+  |+-|.|+.++++  +-+..++++|+-|.++|=..|+||||+||||||||+||||+|++.+.+|+. ..++++-
T Consensus       300 nv~F~--dVkG~DEAK~EL--eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~-~sGSEFd  374 (752)
T KOG0734|consen  300 NVTFE--DVKGVDEAKQEL--EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFY-ASGSEFD  374 (752)
T ss_pred             ccccc--cccChHHHHHHH--HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEe-ccccchh
Confidence            45566  699999999998  455678889999999999999999999999999999999999999999887 7899999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          93 DKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        93 ~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ..++|-..+++|++|+.|++.+|.+
T Consensus       375 Em~VGvGArRVRdLF~aAk~~APcI  399 (752)
T KOG0734|consen  375 EMFVGVGARRVRDLFAAAKARAPCI  399 (752)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999998754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.80  E-value=1.7e-19  Score=143.55  Aligned_cols=102  Identities=38%  Similarity=0.709  Sum_probs=92.7

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      |.+.|+  +++|++..++++ ++.+.+++.+++.++++++.++.|++|+||||||||++|+++|++++.+++. +.++++
T Consensus       448 ~~~~~~--di~g~~~~k~~l-~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~-v~~~~l  523 (733)
T TIGR01243       448 PNVRWS--DIGGLEEVKQEL-REAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIA-VRGPEI  523 (733)
T ss_pred             cccchh--hcccHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE-EehHHH
Confidence            445555  699999999988 8999999999999999999999999999999999999999999999998765 788999


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      .++|+|++++.++++|+.|++.++.+
T Consensus       524 ~~~~vGese~~i~~~f~~A~~~~p~i  549 (733)
T TIGR01243       524 LSKWVGESEKAIREIFRKARQAAPAI  549 (733)
T ss_pred             hhcccCcHHHHHHHHHHHHHhcCCEE
Confidence            99999999999999999999987654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.79  E-value=3e-19  Score=136.59  Aligned_cols=101  Identities=40%  Similarity=0.728  Sum_probs=87.8

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC--------
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE--------   82 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~--------   82 (121)
                      .|++.|+  +|+|++++++++ ++.+..++.+++.|+.+++.+++|++|+||||||||++++++|+.+..+.        
T Consensus       176 ~p~v~~~--dIgGl~~~i~~i-~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~  252 (512)
T TIGR03689       176 VPDVTYA--DIGGLDSQIEQI-RDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS  252 (512)
T ss_pred             CCCCCHH--HcCChHHHHHHH-HHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence            3566666  599999999998 88999999999999999999999999999999999999999999986541        


Q ss_pred             -CeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632          83 -PKIVNGPQVLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                       +..+..++++.+|.+++++.++.+|+.|++.+
T Consensus       253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a  285 (512)
T TIGR03689       253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKA  285 (512)
T ss_pred             eEEeccchhhcccccchHHHHHHHHHHHHHHHh
Confidence             11245677888999999999999999998864

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>KOG0651|consensus

Probab=99.78  E-value=3.4e-19  Score=127.74  Aligned_cols=99  Identities=36%  Similarity=0.617  Sum_probs=92.0

Q ss_pred             CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      .+|+  .++|+-.++.++ ++.++.++.+++++.++|+.+|.+++||||||+|||.+|+++|..++..++. +..+.+++
T Consensus       129 ~s~~--~~ggl~~qirel-re~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~-v~ss~lv~  204 (388)
T KOG0651|consen  129 ISFE--NVGGLFYQIREL-REVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK-VVSSALVD  204 (388)
T ss_pred             cCHH--HhCChHHHHHHH-HhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEE-eeHhhhhh
Confidence            3455  599999999998 9999999999999999999999999999999999999999999999999876 67889999


Q ss_pred             hhhchhHHHHHHHHHHHHHHHHh
Q psy3632          94 KYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        94 ~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      +|.||+.+.||+.|..|+++.+.
T Consensus       205 kyiGEsaRlIRemf~yA~~~~pc  227 (388)
T KOG0651|consen  205 KYIGESARLIRDMFRYAREVIPC  227 (388)
T ss_pred             hhcccHHHHHHHHHHHHhhhCce
Confidence            99999999999999999998763

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.76  E-value=1.7e-18  Score=128.24  Aligned_cols=102  Identities=39%  Similarity=0.708  Sum_probs=90.4

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|.+.|+  +|+|++++++++ ++.+..++.+++.+..+|+.++.+++|+||||||||++++++|+.++.+++. +...+
T Consensus       116 ~p~~~~~--di~Gl~~~~~~l-~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~-v~~~~  191 (364)
T TIGR01242       116 RPNVSYE--DIGGLEEQIREI-REAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR-VVGSE  191 (364)
T ss_pred             CCCCCHH--HhCChHHHHHHH-HHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEe-cchHH
Confidence            4556665  699999999998 8899999999999999999999999999999999999999999999988665 56777


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      +...+.++....++.+|+.|+...+.
T Consensus       192 l~~~~~g~~~~~i~~~f~~a~~~~p~  217 (364)
T TIGR01242       192 LVRKYIGEGARLVREIFELAKEKAPS  217 (364)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhcCCc
Confidence            88889999999999999999876553

Many proteins may score above the trusted cutoff because an internal

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.76  E-value=7.7e-19  Score=123.72  Aligned_cols=98  Identities=22%  Similarity=0.421  Sum_probs=85.9

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      ++..|+  |+.|.+..++..  +.+..++.+|+.|..|   .|++|||+||||||||++|+++|++...+++. +...++
T Consensus       116 ~~it~d--dViGqEeAK~kc--rli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~-vkat~l  187 (368)
T COG1223         116 SDITLD--DVIGQEEAKRKC--RLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLL-VKATEL  187 (368)
T ss_pred             ccccHh--hhhchHHHHHHH--HHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEE-echHHH
Confidence            444555  699999998886  6677788899988877   48899999999999999999999999999665 889999


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+..+.++++|+.|++.+|.+
T Consensus       188 iGehVGdgar~Ihely~rA~~~aPci  213 (368)
T COG1223         188 IGEHVGDGARRIHELYERARKAAPCI  213 (368)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCeE
Confidence            99999999999999999999998754

>KOG0735|consensus

Probab=99.75  E-value=2.3e-18  Score=133.82  Aligned_cols=98  Identities=38%  Similarity=0.599  Sum_probs=90.6

Q ss_pred             CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      ..|+  ||+||.++++.+ .+.+.+|.+.+.+|.+..++.+.||+|+||||||||.+|.++|...+..++. +.++++.+
T Consensus       664 i~w~--digg~~~~k~~l-~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis-vKGPElL~  739 (952)
T KOG0735|consen  664 IRWE--DIGGLFEAKKVL-EEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS-VKGPELLS  739 (952)
T ss_pred             CCce--ecccHHHHHHHH-HHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE-ecCHHHHH
Confidence            4444  699999988876 9999999999999999999999999999999999999999999999999776 89999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHHH
Q psy3632          94 KYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        94 ~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      +|.|.+|.++|.+|..|+..+|
T Consensus       740 KyIGaSEq~vR~lF~rA~~a~P  761 (952)
T KOG0735|consen  740 KYIGASEQNVRDLFERAQSAKP  761 (952)
T ss_pred             HHhcccHHHHHHHHHHhhccCC
Confidence            9999999999999999998765

>KOG0740|consensus

Probab=99.74  E-value=2.1e-18  Score=128.62  Aligned_cols=99  Identities=34%  Similarity=0.542  Sum_probs=89.4

Q ss_pred             ccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632          16 FNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY   95 (121)
Q Consensus        16 ~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~   95 (121)
                      +...|++|+++.++.+ .+.+.+++..++++..+. .+.+++||.||||+|||+|++|+|.+.+..++. ++.+++.++|
T Consensus       150 v~~~di~gl~~~k~~l-~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~-iSassLtsK~  226 (428)
T KOG0740|consen  150 VGWDDIAGLEDAKQSL-KEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFN-ISASSLTSKY  226 (428)
T ss_pred             ccccCCcchhhHHHHh-hhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEee-ccHHHhhhhc
Confidence            3333799999988877 999999999999998765 557799999999999999999999999999887 8899999999


Q ss_pred             hchhHHHHHHHHHHHHHHHHhh
Q psy3632          96 VGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        96 ~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +|+.++.+|.+|+.|+..+|++
T Consensus       227 ~Ge~eK~vralf~vAr~~qPsv  248 (428)
T KOG0740|consen  227 VGESEKLVRALFKVARSLQPSV  248 (428)
T ss_pred             cChHHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999998875

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.74  E-value=6.5e-18  Score=129.01  Aligned_cols=102  Identities=26%  Similarity=0.348  Sum_probs=82.9

Q ss_pred             cccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632           8 SIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus         8 ~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      ++..++..|+  +|+|++..++.+ ++....+   .....++|+++++|+||+||||||||++|+++|++++.+++. ++
T Consensus       219 e~~~~~~~~~--dvgGl~~lK~~l-~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~-l~  291 (489)
T CHL00195        219 EFYSVNEKIS--DIGGLDNLKDWL-KKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR-LD  291 (489)
T ss_pred             cccCCCCCHH--HhcCHHHHHHHH-HHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE-EE
Confidence            3445566666  699999988887 3322211   234566899999999999999999999999999999998766 77


Q ss_pred             CcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          88 GPQVLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      .+.+.++|+|+++.+++++|+.|+..+|.
T Consensus       292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~  320 (489)
T CHL00195        292 VGKLFGGIVGESESRMRQMIRIAEALSPC  320 (489)
T ss_pred             hHHhcccccChHHHHHHHHHHHHHhcCCc
Confidence            88899999999999999999999987764

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.72  E-value=1.2e-17  Score=133.15  Aligned_cols=101  Identities=42%  Similarity=0.744  Sum_probs=90.7

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +.+.|+  ||+|++.+++++ ++.+..++.++++++.+++.++.+++|+||||||||++++++|++++.+++. +++.++
T Consensus       173 ~~~~~~--di~G~~~~~~~l-~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~-i~~~~i  248 (733)
T TIGR01243       173 PKVTYE--DIGGLKEAKEKI-REMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS-INGPEI  248 (733)
T ss_pred             CCCCHH--HhcCHHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEE-EecHHH
Confidence            455666  599999999998 8999999999999999999999999999999999999999999999888654 778888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      .+.+.++.+..++.+|+.|..+.+.
T Consensus       249 ~~~~~g~~~~~l~~lf~~a~~~~p~  273 (733)
T TIGR01243       249 MSKYYGESEERLREIFKEAEENAPS  273 (733)
T ss_pred             hcccccHHHHHHHHHHHHHHhcCCc
Confidence            8999999999999999999877654

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0732|consensus

Probab=99.72  E-value=1e-17  Score=134.86  Aligned_cols=104  Identities=31%  Similarity=0.585  Sum_probs=92.7

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC----CCeeec
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR----EPKIVN   87 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~----~~~~~~   87 (121)
                      ..+.|+  ++||++..+.++ ++.+..++..|+.|.++++.+|+|+++|||||||||+.|+++|..+...    .+...+
T Consensus       260 ~~v~fd--~vggl~~~i~~L-KEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk  336 (1080)
T KOG0732|consen  260 SSVGFD--SVGGLENYINQL-KEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK  336 (1080)
T ss_pred             cccCcc--ccccHHHHHHHH-HHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence            345666  599999999998 9999999999999999999999999999999999999999999988543    222368


Q ss_pred             CcccchhhhchhHHHHHHHHHHHHHHHHhhh
Q psy3632          88 GPQVLDKYVGESEANVRRLFADAEEEEKRVS  118 (121)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~~  118 (121)
                      +.+..++|+|+.++.++.+|++|++..|++.
T Consensus       337 gaD~lskwvgEaERqlrllFeeA~k~qPSII  367 (1080)
T KOG0732|consen  337 GADCLSKWVGEAERQLRLLFEEAQKTQPSII  367 (1080)
T ss_pred             CchhhccccCcHHHHHHHHHHHHhccCceEE
Confidence            8899999999999999999999999988763

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.72  E-value=1.4e-17  Score=127.70  Aligned_cols=100  Identities=29%  Similarity=0.538  Sum_probs=87.0

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      |.+.|+  |++|++++++++ ++.+. .+.+++.+.+++..+++|++|+||||||||++++++|++++.+++. ++..++
T Consensus        50 ~~~~~~--di~g~~~~k~~l-~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~-i~~~~~  124 (495)
T TIGR01241        50 PKVTFK--DVAGIDEAKEEL-MEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS-ISGSDF  124 (495)
T ss_pred             CCCCHH--HhCCHHHHHHHH-HHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee-ccHHHH
Confidence            455665  699999999998 56555 4788999999999999999999999999999999999999988665 677888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      .+.+.+.+++.++.+|+.|+.++|.
T Consensus       125 ~~~~~g~~~~~l~~~f~~a~~~~p~  149 (495)
T TIGR01241       125 VEMFVGVGASRVRDLFEQAKKNAPC  149 (495)
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCC
Confidence            8899999999999999999887654

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=3.5e-17  Score=126.39  Aligned_cols=99  Identities=28%  Similarity=0.537  Sum_probs=90.0

Q ss_pred             CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      +.|.  |+.|.|..+.++ .+ +..++.+|.-|..+|...|+|++|+||||||||++||++|++.+.+++. +++++++.
T Consensus       147 v~F~--DVAG~dEakeel-~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~-iSGS~FVe  221 (596)
T COG0465         147 VTFA--DVAGVDEAKEEL-SE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS-ISGSDFVE  221 (596)
T ss_pred             cChh--hhcCcHHHHHHH-HH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee-ccchhhhh
Confidence            4444  799999999998 44 5578889999999999999999999999999999999999999999887 89999999


Q ss_pred             hhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          94 KYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        94 ~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      .++|-..+.+|++|.+|++++|.+
T Consensus       222 mfVGvGAsRVRdLF~qAkk~aP~I  245 (596)
T COG0465         222 MFVGVGASRVRDLFEQAKKNAPCI  245 (596)
T ss_pred             hhcCCCcHHHHHHHHHhhccCCCe
Confidence            999999999999999999998854

>KOG0730|consensus

Probab=99.68  E-value=4.3e-17  Score=125.79  Aligned_cols=95  Identities=36%  Similarity=0.689  Sum_probs=89.4

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES   99 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~   99 (121)
                      +++|+..++..+ ++.+.+++.++..+..++.++++++++|||||||||.+++++|++.+..++. ++++++++++.|++
T Consensus       185 ~~gg~~~~~~~i-~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~-i~~peli~k~~gEt  262 (693)
T KOG0730|consen  185 DIGGLKRQLSVI-RELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFL-INGPELISKFPGET  262 (693)
T ss_pred             ccchhHHHHHHH-HHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEe-cccHHHHHhcccch
Confidence            699999999998 9999999999999999999999999999999999999999999999977544 89999999999999


Q ss_pred             HHHHHHHHHHHHHHH-Hh
Q psy3632         100 EANVRRLFADAEEEE-KR  116 (121)
Q Consensus       100 ~~~i~~~f~~a~~~~-~~  116 (121)
                      ++++|++|++|++++ |+
T Consensus       263 e~~LR~~f~~a~k~~~ps  280 (693)
T KOG0730|consen  263 ESNLRKAFAEALKFQVPS  280 (693)
T ss_pred             HHHHHHHHHHHhccCCCe
Confidence            999999999999887 54

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.64  E-value=3.4e-16  Score=115.27  Aligned_cols=65  Identities=12%  Similarity=0.181  Sum_probs=60.7

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      +++++|.+++||||||||||++|+++|++++.+++. ++.+++.++|+|++++.+|++|+.|++.+
T Consensus       143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~-vsa~eL~sk~vGEsEk~IR~~F~~A~~~a  207 (413)
T PLN00020        143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIV-MSAGELESENAGEPGKLIRQRYREAADII  207 (413)
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEE-EEHHHhhcCcCCcHHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999655 89999999999999999999999999864

>CHL00176 ftsH cell division protein; Validated

Probab=99.64  E-value=5.1e-16  Score=121.84  Aligned_cols=100  Identities=32%  Similarity=0.540  Sum_probs=85.1

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +.+.|+  |++|+++.++++ .+.+ ..+.+++.|..++...+++++|+||||||||++|+++|++.+.+++. ++++++
T Consensus       178 ~~~~f~--dv~G~~~~k~~l-~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~-is~s~f  252 (638)
T CHL00176        178 TGITFR--DIAGIEEAKEEF-EEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS-ISGSEF  252 (638)
T ss_pred             CCCCHH--hccChHHHHHHH-HHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeee-ccHHHH
Confidence            344555  699999999887 5544 55778889999999999999999999999999999999999998766 678888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      ...+.+.....++.+|+.|+..+|.
T Consensus       253 ~~~~~g~~~~~vr~lF~~A~~~~P~  277 (638)
T CHL00176        253 VEMFVGVGAARVRDLFKKAKENSPC  277 (638)
T ss_pred             HHHhhhhhHHHHHHHHHHHhcCCCc
Confidence            8888888889999999999887654

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.45  E-value=2.1e-13  Score=97.05  Aligned_cols=90  Identities=26%  Similarity=0.420  Sum_probs=65.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCC---CccEEEEcCCCCcHHHHHHHHHHHhcC------CCCeeecCcc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQH---VKGILLYGPPGTGKTLMARQIGQMLNA------REPKIVNGPQ   90 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~---~~~vll~Gp~G~GKT~l~~~la~~~~~------~~~~~~~~~~   90 (121)
                      ++.|++++++++ ++.+...... ......|..+   ..+++|+||||||||++|+++|+.+..      ..+..+...+
T Consensus         7 ~~~Gl~~vk~~i-~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~   84 (261)
T TIGR02881         7 RMVGLDEVKALI-KEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD   84 (261)
T ss_pred             HhcChHHHHHHH-HHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence            689999999988 6665554332 3333455544   346899999999999999999987631      1122256677


Q ss_pred             cchhhhchhHHHHHHHHHHHH
Q psy3632          91 VLDKYVGESEANVRRLFADAE  111 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~  111 (121)
                      +.+.|.|+++..++++|+.|.
T Consensus        85 l~~~~~g~~~~~~~~~~~~a~  105 (261)
T TIGR02881        85 LVGEYIGHTAQKTREVIKKAL  105 (261)
T ss_pred             hhhhhccchHHHHHHHHHhcc
Confidence            888899999999999998764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.43  E-value=2.6e-13  Score=97.78  Aligned_cols=90  Identities=24%  Similarity=0.371  Sum_probs=69.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCC---CccEEEEcCCCCcHHHHHHHHHHHhcCC------CCeeecCcc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQH---VKGILLYGPPGTGKTLMARQIGQMLNAR------EPKIVNGPQ   90 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~---~~~vll~Gp~G~GKT~l~~~la~~~~~~------~~~~~~~~~   90 (121)
                      +++|++++++++ ++.+.+ +..++.+.+.|+.+   ..+++|+||||||||++|+++|..+...      .+..++..+
T Consensus        23 ~l~Gl~~vk~~i-~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~  100 (284)
T TIGR02880        23 ELIGLKPVKTRI-REIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD  100 (284)
T ss_pred             hccCHHHHHHHH-HHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence            489999999998 666555 44667777788765   3379999999999999999999987431      122255667


Q ss_pred             cchhhhchhHHHHHHHHHHHH
Q psy3632          91 VLDKYVGESEANVRRLFADAE  111 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~  111 (121)
                      ++..+.|+++.+++.+|+.|.
T Consensus       101 l~~~~~g~~~~~~~~~~~~a~  121 (284)
T TIGR02880       101 LVGQYIGHTAPKTKEILKRAM  121 (284)
T ss_pred             HhHhhcccchHHHHHHHHHcc
Confidence            778888988888888888763

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>CHL00181 cbbX CbbX; Provisional

Probab=99.43  E-value=4.1e-13  Score=96.89  Aligned_cols=90  Identities=23%  Similarity=0.364  Sum_probs=67.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCc---cEEEEcCCCCcHHHHHHHHHHHhcCC------CCeeecCcc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVK---GILLYGPPGTGKTLMARQIGQMLNAR------EPKIVNGPQ   90 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~---~vll~Gp~G~GKT~l~~~la~~~~~~------~~~~~~~~~   90 (121)
                      +++|++++++++ ++.+.. +..++.+.+.|+.++.   +++|+||||||||++|+++|..+...      .+..++..+
T Consensus        24 ~l~Gl~~vK~~i-~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~  101 (287)
T CHL00181         24 ELVGLAPVKTRI-REIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD  101 (287)
T ss_pred             hcCCcHHHHHHH-HHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence            599999999988 666554 3345666777776542   48999999999999999999986321      122356667


Q ss_pred             cchhhhchhHHHHHHHHHHHH
Q psy3632          91 VLDKYVGESEANVRRLFADAE  111 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~  111 (121)
                      +++.+.|+++.+++.+|+.|.
T Consensus       102 l~~~~~g~~~~~~~~~l~~a~  122 (287)
T CHL00181        102 LVGQYIGHTAPKTKEVLKKAM  122 (287)
T ss_pred             HHHHHhccchHHHHHHHHHcc
Confidence            888899988888888887753

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.42  E-value=1.6e-13  Score=115.86  Aligned_cols=54  Identities=20%  Similarity=0.231  Sum_probs=45.7

Q ss_pred             CChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632          41 FPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY   95 (121)
Q Consensus        41 ~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~   95 (121)
                      ..+....++|+.+++||||+||||||||.+|+++|++.+.+++. +++++++.++
T Consensus      1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIs-ISgs~fl~~~ 1670 (2281)
T CHL00206       1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFIT-VFLNKFLDNK 1670 (2281)
T ss_pred             cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEE-EEHHHHhhcc
Confidence            34566678999999999999999999999999999999999877 6677766543

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.40  E-value=5.5e-13  Score=105.23  Aligned_cols=95  Identities=27%  Similarity=0.507  Sum_probs=81.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES   99 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~   99 (121)
                      ++.|++..+.++ .+.+.. +..++.+..++...++|++|+||||||||+++++++++++.+++. +++.++...+.+..
T Consensus       153 di~g~~~~~~~l-~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~-is~~~~~~~~~g~~  229 (644)
T PRK10733        153 DVAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT-ISGSDFVEMFVGVG  229 (644)
T ss_pred             HHcCHHHHHHHH-HHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEE-EehHHhHHhhhccc
Confidence            689999998887 555544 566777888888889999999999999999999999999998765 77888888899999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy3632         100 EANVRRLFADAEEEEKRV  117 (121)
Q Consensus       100 ~~~i~~~f~~a~~~~~~~  117 (121)
                      ...++.+|+.|+..+|.+
T Consensus       230 ~~~~~~~f~~a~~~~P~I  247 (644)
T PRK10733        230 ASRVRDMFEQAKKAAPCI  247 (644)
T ss_pred             HHHHHHHHHHHHhcCCcE
Confidence            999999999998876643

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.36  E-value=7.2e-13  Score=84.27  Aligned_cols=57  Identities=40%  Similarity=0.746  Sum_probs=51.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      ++|+||||||||++++.+|..++.++.. ++..++.+.+.++.++.++.+|++|....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~-i~~~~~~~~~~~~~~~~i~~~~~~~~~~~   57 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIE-IDGSELISSYAGDSEQKIRDFFKKAKKSA   57 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEE-EETTHHHTSSTTHHHHHHHHHHHHHHHTS
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccc-ccccccccccccccccccccccccccccc
Confidence            6899999999999999999999987655 78888888889999999999999998775

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0744|consensus

Probab=99.32  E-value=1.9e-12  Score=93.85  Aligned_cols=62  Identities=34%  Similarity=0.515  Sum_probs=51.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC--------CeeecCcccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE--------PKIVNGPQVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      .+-+++|||||||||+||+++|..+....        ..-++...+.++|++|+.+.+..+|++.++...
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~  246 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVE  246 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence            44589999999999999999999985431        111678889999999999999999999887643

>KOG0743|consensus

Probab=99.28  E-value=6.5e-12  Score=94.10  Aligned_cols=67  Identities=24%  Similarity=0.435  Sum_probs=57.5

Q ss_pred             CcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          14 FDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      -.|+.+   .||..+++-+.+++..+....+.|++.|..+.+|+||+||||||||+++-|||++++.+..
T Consensus       198 stF~Tl---aMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIy  264 (457)
T KOG0743|consen  198 STFETL---AMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIY  264 (457)
T ss_pred             CCcccc---ccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceE
Confidence            445543   3777666656889999999999999999999999999999999999999999999988743

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.24  E-value=2.5e-11  Score=91.12  Aligned_cols=90  Identities=33%  Similarity=0.420  Sum_probs=64.6

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhC-CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhc-
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLG-CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVG-   97 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~-~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~-   97 (121)
                      |.|.++.++.+ ...+...+....+...+. -..+++++|+||||||||++++++|..++.+++. ++...+. ..|+| 
T Consensus        14 IiGQ~eAkk~l-svAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~-vdat~~~e~g~vG~   91 (441)
T TIGR00390        14 IIGQDNAKKSV-AIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVGR   91 (441)
T ss_pred             ccCHHHHHHHH-HHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE-eecceeecCCcccC
Confidence            78999988887 444333222111111111 1235789999999999999999999999998766 6666666 47888 


Q ss_pred             hhHHHHHHHHHHHHH
Q psy3632          98 ESEANVRRLFADAEE  112 (121)
Q Consensus        98 ~~~~~i~~~f~~a~~  112 (121)
                      +.+..++.+|+.|..
T Consensus        92 dvE~i~r~l~e~A~~  106 (441)
T TIGR00390        92 DVESMVRDLTDAAVK  106 (441)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            578999999999854

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.23  E-value=3.2e-11  Score=90.61  Aligned_cols=94  Identities=32%  Similarity=0.385  Sum_probs=66.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCC-CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGC-QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVG   97 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~   97 (121)
                      .|.|.+.+++.+ ...+...++...+...... ..+.+++|+||||||||++|+++|..++.+++. ++...+.. +|+|
T Consensus        16 ~IiGQe~Akkal-avAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~-vD~t~f~e~GyvG   93 (443)
T PRK05201         16 YIIGQDDAKRAV-AIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVG   93 (443)
T ss_pred             ccCCHHHHHHHH-HHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChhee-ecchhhccCCccc
Confidence            388999998887 4444322111111111110 125789999999999999999999999999776 66666664 6999


Q ss_pred             -hhHHHHHHHHHHHHHHHH
Q psy3632          98 -ESEANVRRLFADAEEEEK  115 (121)
Q Consensus        98 -~~~~~i~~~f~~a~~~~~  115 (121)
                       +.+..++.+|+.|....+
T Consensus        94 ~d~e~~ir~L~~~A~~~~~  112 (443)
T PRK05201         94 RDVESIIRDLVEIAVKMVR  112 (443)
T ss_pred             CCHHHHHHHHHHHHHHHhH
Confidence             558999999999965544

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.03  E-value=6.5e-10  Score=82.63  Aligned_cols=54  Identities=31%  Similarity=0.571  Sum_probs=42.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ...++|||||||||||+|++||+..+..|..+ +.       +..+-+.+|++|+.|++...
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~-sA-------v~~gvkdlr~i~e~a~~~~~  101 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEAL-SA-------VTSGVKDLREIIEEARKNRL  101 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEe-cc-------ccccHHHHHHHHHHHHHHHh
Confidence            44699999999999999999999999886553 22       22245679999999987654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.00  E-value=8.1e-10  Score=76.93  Aligned_cols=55  Identities=25%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      ++.|.++.+..+ +-.+....        ..-....+++||||||+||||+|+.+|++++.++.
T Consensus        25 efiGQ~~l~~~l-~i~i~aa~--------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   25 EFIGQEHLKGNL-KILIRAAK--------KRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             CS-S-HHHHHHH-HHHHHHHH--------CTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             HccCcHHHHhhh-HHHHHHHH--------hcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            699999988876 32222111        01123457999999999999999999999998853

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.85  E-value=6.2e-09  Score=83.57  Aligned_cols=62  Identities=29%  Similarity=0.477  Sum_probs=47.7

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHh----------cCCCCeeecCcccc--hhhhchhHHHHHHHHHHHHHHH
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQML----------NAREPKIVNGPQVL--DKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      ....+++|+||||||||++++++|..+          +..+.. ++.+.++  .+|.|+.+..++.+|++++.+.
T Consensus       201 ~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~  274 (731)
T TIGR02639       201 RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LDMGSLLAGTKYRGDFEERLKAVVSEIEKEP  274 (731)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ecHHHHhhhccccchHHHHHHHHHHHHhccC
Confidence            345689999999999999999999987          222222 4444555  4688999999999999987653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.80  E-value=8.3e-10  Score=81.08  Aligned_cols=58  Identities=17%  Similarity=0.323  Sum_probs=44.9

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFAD  109 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~  109 (121)
                      +..+..+.|.||+||||||++|+||+...++.+.+..++..+... ....+.+.++||.
T Consensus        26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l-~P~~R~iamVFQ~   83 (338)
T COG3839          26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL-PPEKRGIAMVFQN   83 (338)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhHCCEEEEeCC
Confidence            344455999999999999999999999999999987777776553 3344666667764

>TIGR00763 lon ATP-dependent protease La

Probab=98.79  E-value=1.4e-08  Score=81.97  Aligned_cols=85  Identities=26%  Similarity=0.344  Sum_probs=54.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc-----cc---
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP-----QV---   91 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~-----~~---   91 (121)
                      ++.|++++++.+ .+.+......       +-..+..++|+||||||||++|+++|+.++.+++.+..+.     ++   
T Consensus       321 ~~~G~~~~k~~i-~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~  392 (775)
T TIGR00763       321 DHYGLKKVKERI-LEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH  392 (775)
T ss_pred             hcCChHHHHHHH-HHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence            477888888777 4433322110       1112336999999999999999999999998876642211     11   


Q ss_pred             chhhhchhHHHHHHHHHHHHH
Q psy3632          92 LDKYVGESEANVRRLFADAEE  112 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~  112 (121)
                      ...|.|.....+.+.|..|..
T Consensus       393 ~~~~~g~~~g~i~~~l~~~~~  413 (775)
T TIGR00763       393 RRTYVGAMPGRIIQGLKKAKT  413 (775)
T ss_pred             CCceeCCCCchHHHHHHHhCc
Confidence            134666666667777776643

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.77  E-value=3e-09  Score=78.55  Aligned_cols=63  Identities=24%  Similarity=0.400  Sum_probs=46.9

Q ss_pred             HHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632          46 VEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFAD  109 (121)
Q Consensus        46 ~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~  109 (121)
                      .+++.++...|  +.|.|||||||||+.|+||+...++.+.+..++..+.. +....+.+..+||.
T Consensus        21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~-lpp~kR~ig~VFQ~   85 (352)
T COG3842          21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD-VPPEKRPIGMVFQS   85 (352)
T ss_pred             EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-CChhhcccceeecC
Confidence            33444444444  78999999999999999999999999988666666655 34445667777775

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=98.76  E-value=1.1e-08  Score=80.52  Aligned_cols=98  Identities=21%  Similarity=0.379  Sum_probs=68.5

Q ss_pred             cccCCccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632           2 EVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus         2 e~~~~~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +++....+..|+.-++  ++.|.++.++.+ +..+.               ...+++|+||||||||+++++++..++..
T Consensus         3 ~~~~~~~~~~~~~~~~--~viG~~~a~~~l-~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~   64 (608)
T TIGR00764         3 KFETTEEIPVPERLID--QVIGQEEAVEII-KKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE   64 (608)
T ss_pred             CcccccccCcchhhHh--hccCHHHHHHHH-HHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence            4566667767775555  488888877765 33332               12379999999999999999999999765


Q ss_pred             CCe----eecC-----cccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          82 EPK----IVNG-----PQVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        82 ~~~----~~~~-----~~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      .+.    +.+.     ..+..-+.+..++.++..|..|++.+++-
T Consensus        65 ~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~  109 (608)
T TIGR00764        65 ELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKAFKQPSSR  109 (608)
T ss_pred             hheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHhhcccchh
Confidence            211    1111     22334467778899999999999877653

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=98.75  E-value=2.4e-08  Score=75.42  Aligned_cols=87  Identities=22%  Similarity=0.334  Sum_probs=53.7

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHh--CC-CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhh
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQL--GC-QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYV   96 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~--~~-~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~   96 (121)
                      |.|.+.+++.+ ...+.............  .. .+..+++|+||||||||++|+++|..++.++.. ++...+. ..|+
T Consensus        73 ViGq~~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~-id~~~l~~~gyv  150 (412)
T PRK05342         73 VIGQERAKKVL-SVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI-ADATTLTEAGYV  150 (412)
T ss_pred             eeChHHHHHHH-HHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee-cchhhcccCCcc
Confidence            78999888876 33332211110000000  11 134679999999999999999999999988765 5555543 3577


Q ss_pred             chhH-HHHHHHHHH
Q psy3632          97 GESE-ANVRRLFAD  109 (121)
Q Consensus        97 ~~~~-~~i~~~f~~  109 (121)
                      |+.. ..+..+++.
T Consensus       151 G~d~e~~l~~l~~~  164 (412)
T PRK05342        151 GEDVENILLKLLQA  164 (412)
T ss_pred             cchHHHHHHHHHHh
Confidence            7653 334555543

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=3.3e-08  Score=72.55  Aligned_cols=91  Identities=31%  Similarity=0.354  Sum_probs=63.3

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES   99 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~   99 (121)
                      |.|.++.++.+ .-.+.+..+...+...+.-. .|++||..||.|.|||.+||-+|+..+.+|+.+-.....--+|+|..
T Consensus        17 IIGQ~~AKkaV-AIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrD   95 (444)
T COG1220          17 IIGQDEAKKAV-AIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRD   95 (444)
T ss_pred             hcCcHHHHHHH-HHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccccc
Confidence            78999988877 44444444444444444322 27899999999999999999999999999988533322233677765


Q ss_pred             -HHHHHHHHHHHHH
Q psy3632         100 -EANVRRLFADAEE  112 (121)
Q Consensus       100 -~~~i~~~f~~a~~  112 (121)
                       +..+|++-+.|-.
T Consensus        96 VesivRDLve~av~  109 (444)
T COG1220          96 VESIIRDLVEIAVK  109 (444)
T ss_pred             HHHHHHHHHHHHHH
Confidence             5667776665543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.72  E-value=2.7e-08  Score=80.81  Aligned_cols=65  Identities=31%  Similarity=0.501  Sum_probs=49.1

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC---------CCCeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNA---------REPKIVNGPQVL--DKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~---------~~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      +......+++|+||||+|||++++.+|..+..         ..+..++.+.++  .+|.|+.+.+++.+|+++++.
T Consensus       195 L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~  270 (821)
T CHL00095        195 LGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQEN  270 (821)
T ss_pred             HcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhc
Confidence            34456678999999999999999999998742         112224555555  367889999999999998754

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.72  E-value=1.5e-08  Score=72.65  Aligned_cols=53  Identities=26%  Similarity=0.417  Sum_probs=39.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|.++.++++ .-.+...        +..-....+++|+||||.||||+|..+|++++..
T Consensus        27 efiGQ~~vk~~L-~ifI~AA--------k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn   79 (332)
T COG2255          27 EFIGQEKVKEQL-QIFIKAA--------KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN   79 (332)
T ss_pred             HhcChHHHHHHH-HHHHHHH--------HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence            578888887776 3333221        1222445689999999999999999999999887

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.69  E-value=3.7e-08  Score=66.04  Aligned_cols=56  Identities=30%  Similarity=0.474  Sum_probs=44.7

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      ..++|+|++|+||||+.+++|+.++.+|   ++....+....+.+   +.++|+.-.+..++
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F---~D~D~~Ie~~~g~s---I~eIF~~~GE~~FR   58 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPF---IDTDQEIEKRTGMS---IAEIFEEEGEEGFR   58 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCc---ccchHHHHHHHCcC---HHHHHHHHhHHHHH
Confidence            4689999999999999999999999987   45667777666644   88888876665554

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=6.4e-08  Score=74.52  Aligned_cols=76  Identities=47%  Similarity=0.774  Sum_probs=69.1

Q ss_pred             ccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          38 SRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      .++.+++.++.++..++.+++++||||+|||++++++|.. ...+ ..+.+....+++.++.+..++.+|+.|+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   77 (494)
T COG0464           2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEF-LSINGPEILSKYVGESELRLRELFEEAEKLAP   77 (494)
T ss_pred             CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcc-cccCcchhhhhhhhHHHHHHHHHHHHHHHhCC
Confidence            3566788899999999999999999999999999999999 6666 66889999999999999999999999999876

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.67  E-value=8.9e-08  Score=67.52  Aligned_cols=56  Identities=16%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ++.|++.+++.+.+ ....++         .-.+..++||+|+.|||||++++++..++......+
T Consensus        28 ~L~Gie~Qk~~l~~-Nt~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRl   83 (249)
T PF05673_consen   28 DLIGIERQKEALIE-NTEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRL   83 (249)
T ss_pred             HhcCHHHHHHHHHH-HHHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceE
Confidence            69999999999833 332222         224677899999999999999999999987765554

>KOG2028|consensus

Probab=98.67  E-value=8e-08  Score=71.39  Aligned_cols=54  Identities=33%  Similarity=0.596  Sum_probs=39.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      .++||||||||||++|+.|+.....+.+..+.-+     ....+...+|.+|+.|++..
T Consensus       164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelS-----At~a~t~dvR~ife~aq~~~  217 (554)
T KOG2028|consen  164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELS-----ATNAKTNDVRDIFEQAQNEK  217 (554)
T ss_pred             ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe-----ccccchHHHHHHHHHHHHHH
Confidence            4999999999999999999998877743333211     12334567999999987653

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.66  E-value=8.3e-08  Score=71.13  Aligned_cols=52  Identities=21%  Similarity=0.372  Sum_probs=37.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|+++.+.++... +...      .  .|.. ..+.++|+|||||||||+|++|++.+..
T Consensus        52 ~~~G~~~~i~~lv~~-l~~~------a--~g~~~~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       52 DFFGMEEAIERFVNY-FKSA------A--QGLEERKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             hccCcHHHHHHHHHH-HHHH------H--hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            699999998887432 2111      1  1222 2455789999999999999999999866

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.64  E-value=4.2e-08  Score=65.87  Aligned_cols=49  Identities=14%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE   98 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~   98 (121)
                      .+.++..++++||+|||||++.|++|....++.+.+...++.++.+-.+
T Consensus        25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pe   73 (223)
T COG4619          25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE   73 (223)
T ss_pred             eecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChH
Confidence            4455666999999999999999999999999999988888777765443

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.64  E-value=1e-07  Score=59.96  Aligned_cols=61  Identities=31%  Similarity=0.504  Sum_probs=40.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC--CeeecCcccchh--------------hhchhHHHHHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE--PKIVNGPQVLDK--------------YVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~--~~~~~~~~~~~~--------------~~~~~~~~i~~~f~~a~~~~  114 (121)
                      +..++|+||||||||++++.+|..+....  +..++.......              .........+.+++.|+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK   78 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence            34689999999999999999999998863  333444332221              12234555667777776643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.63  E-value=9.7e-09  Score=71.08  Aligned_cols=67  Identities=18%  Similarity=0.292  Sum_probs=43.0

Q ss_pred             hHHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-h-hhchhHHHHHHHHHH
Q psy3632          43 PEVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-K-YVGESEANVRRLFAD  109 (121)
Q Consensus        43 ~~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~-~~~~~~~~i~~~f~~  109 (121)
                      .++++.+.++.  +.-+.++||+||||||++|++...-..+.+.+...+..+. . ...+-.+++..+||.
T Consensus        15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~   85 (240)
T COG1126          15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQ   85 (240)
T ss_pred             eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeeccc
Confidence            34444444444  4448899999999999999999998888888755443221 1 122233444456653

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.62  E-value=7.9e-08  Score=69.57  Aligned_cols=54  Identities=26%  Similarity=0.412  Sum_probs=40.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ++.|.++.++++ +..+....        ..-..+.+++|+||||+|||++++++|+.++.+.
T Consensus         5 ~~iG~~~~~~~l-~~~l~~~~--------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~   58 (305)
T TIGR00635         5 EFIGQEKVKEQL-QLFIEAAK--------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL   58 (305)
T ss_pred             HHcCHHHHHHHH-HHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            689999998887 44442111        1112345799999999999999999999998663

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG0736|consensus

Probab=98.61  E-value=3.8e-08  Score=78.29  Aligned_cols=63  Identities=25%  Similarity=0.442  Sum_probs=56.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ...+||+|+||||||++++++|.+++.+.+. +++.++.+.....++.++...|+.|+.-.+.+
T Consensus       431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~e-vdc~el~~~s~~~~etkl~~~f~~a~~~~pav  493 (953)
T KOG0736|consen  431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLE-VDCYELVAESASHTETKLQAIFSRARRCSPAV  493 (953)
T ss_pred             ceEEEEeCCCCCChHHHHHHHHHHhCCceEe-ccHHHHhhcccchhHHHHHHHHHHHhhcCceE
Confidence            3459999999999999999999999999777 88999999999999999999999999876543

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=98.60  E-value=1e-07  Score=72.05  Aligned_cols=54  Identities=35%  Similarity=0.597  Sum_probs=38.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchh-HHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGES-EANVRRLFA  108 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~~~f~  108 (121)
                      ..+++|+||||||||++|+++|..++.++.. ++...+. ..|+|+. +..+..+++
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~-~da~~L~~~gyvG~d~e~~L~~~~~  171 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAI-ADATTLTEAGYVGEDVENILLKLLQ  171 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEE-echhhccccccccccHHHHHHHHHH
Confidence            3579999999999999999999999887644 4544443 3577764 344444444

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.60  E-value=2.5e-08  Score=69.09  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=46.3

Q ss_pred             ccCCChHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCC-----Ceee-cCcccchh--hhchhHHHHHHHH
Q psy3632          38 SRVFPPEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNARE-----PKIV-NGPQVLDK--YVGESEANVRRLF  107 (121)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~-----~~~~-~~~~~~~~--~~~~~~~~i~~~f  107 (121)
                      ......+.++.+.++.+.  -..|.||+||||||++|++.+......     +.+. ++.++...  -+-+-.+.+.++|
T Consensus        15 ~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF   94 (253)
T COG1117          15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF   94 (253)
T ss_pred             EEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence            334445555555555544  477999999999999999999876543     3332 33333332  1445567788888


Q ss_pred             HHH
Q psy3632         108 ADA  110 (121)
Q Consensus       108 ~~a  110 (121)
                      |..
T Consensus        95 QkP   97 (253)
T COG1117          95 QKP   97 (253)
T ss_pred             cCC
Confidence            864

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.57  E-value=1.9e-08  Score=69.66  Aligned_cols=75  Identities=13%  Similarity=0.244  Sum_probs=54.6

Q ss_pred             hhccCCChHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHH
Q psy3632          36 FASRVFPPEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA  110 (121)
Q Consensus        36 i~~~~~~~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a  110 (121)
                      +.+.+..+++.+.+.++...  -..+.||+|+||||+.+++.+++.+..+.+...+.....|..+...+.|.+.-+.
T Consensus         7 ls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~   83 (259)
T COG4559           7 LSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQN   83 (259)
T ss_pred             eEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccC
Confidence            34444555666665555544  4779999999999999999999999888876677777778777666666655443

>KOG0741|consensus

Probab=98.57  E-value=3e-08  Score=76.36  Aligned_cols=66  Identities=26%  Similarity=0.388  Sum_probs=55.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      ..+-..++|+||||+|||+||-.+|...+.+++.+++..+++.....+.-..++.+|++|.+.+-+
T Consensus       535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~ls  600 (744)
T KOG0741|consen  535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLS  600 (744)
T ss_pred             cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcce
Confidence            344456999999999999999999999999999999888888766566667899999999886543

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.56  E-value=1.5e-07  Score=69.12  Aligned_cols=54  Identities=26%  Similarity=0.390  Sum_probs=40.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ++.|.++.++.+ ...+....        ..-.++.+++|+||||+|||++|+++|++++...
T Consensus        26 ~~vG~~~~~~~l-~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~   79 (328)
T PRK00080         26 EFIGQEKVKENL-KIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI   79 (328)
T ss_pred             HhcCcHHHHHHH-HHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            589999988877 43332110        0113456899999999999999999999998764

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.56  E-value=3.7e-08  Score=70.04  Aligned_cols=52  Identities=15%  Similarity=0.330  Sum_probs=38.0

Q ss_pred             hHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          43 PEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        43 ~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      ..+++++.++.+.  -+.+.||+|||||||.|++++.+.+..+.+.-.+..+..
T Consensus        15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~   68 (258)
T COG1120          15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS   68 (258)
T ss_pred             eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence            3445555554444  488999999999999999999999888877544444433

>KOG0742|consensus

Probab=98.55  E-value=2.3e-07  Score=69.84  Aligned_cols=60  Identities=32%  Similarity=0.582  Sum_probs=45.4

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      +-++|+||||||||||++||-||...+.+.- +..++++. ..-.+.-.+|+++|+-|....
T Consensus       383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA-~mTGGDVA-PlG~qaVTkiH~lFDWakkS~  442 (630)
T KOG0742|consen  383 PFRNILFYGPPGTGKTMFARELARHSGLDYA-IMTGGDVA-PLGAQAVTKIHKLFDWAKKSR  442 (630)
T ss_pred             hhhheeeeCCCCCCchHHHHHHHhhcCCcee-hhcCCCcc-ccchHHHHHHHHHHHHHhhcc
Confidence            3457999999999999999999999988843 24444443 333445678999999887653

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.54  E-value=9.5e-08  Score=65.86  Aligned_cols=45  Identities=40%  Similarity=0.637  Sum_probs=32.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ .-..            .|   ..+++++||||||||++|+.+...+..
T Consensus         4 dI~GQe~aKrAL-~iAA------------aG---~h~lLl~GppGtGKTmlA~~l~~lLP~   48 (206)
T PF01078_consen    4 DIVGQEEAKRAL-EIAA------------AG---GHHLLLIGPPGTGKTMLARRLPSLLPP   48 (206)
T ss_dssp             CSSSTHHHHHHH-HHHH------------HC---C--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred             hhcCcHHHHHHH-HHHH------------cC---CCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence            699999988887 2111            12   358999999999999999999998754

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>KOG0989|consensus

Probab=98.54  E-value=1.4e-07  Score=68.23  Aligned_cols=47  Identities=32%  Similarity=0.576  Sum_probs=36.4

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+.+++.+ ...+..             ....+++||||||||||+.++++|+++..
T Consensus        37 e~~gQe~vV~~L-~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~   83 (346)
T KOG0989|consen   37 ELAGQEHVVQVL-KNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNC   83 (346)
T ss_pred             hhcchHHHHHHH-HHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence            588898888776 433321             22346999999999999999999999865

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.54  E-value=3.4e-07  Score=74.80  Aligned_cols=60  Identities=25%  Similarity=0.414  Sum_probs=44.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcC----------CCCeeecCcccc--hhhhchhHHHHHHHHHHHHH
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNA----------REPKIVNGPQVL--DKYVGESEANVRRLFADAEE  112 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~----------~~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~  112 (121)
                      ....+++|+||||+|||++++++|..+..          +.+ .++.+.++  .+|.|+.++.++.+|+++.+
T Consensus       197 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~-~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~  268 (857)
T PRK10865        197 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL-ALDMGALVAGAKYRGEFEERLKGVLNDLAK  268 (857)
T ss_pred             CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE-EEehhhhhhccchhhhhHHHHHHHHHHHHH
Confidence            44557999999999999999999998732          221 23344444  35778889999999998654

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.51  E-value=2.8e-07  Score=68.16  Aligned_cols=58  Identities=33%  Similarity=0.489  Sum_probs=44.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC--CCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR--EPKIVNGPQVLDKYVGESEANVRRLFAD  109 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~f~~  109 (121)
                      +--..+++|+.||||||||.+|-++|++++..  |.. ++++++.+.-..+++.. .+.|..
T Consensus        61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~-isgsEiYS~E~kKTE~L-~qa~Rr  120 (450)
T COG1224          61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA-ISGSEIYSLEVKKTEAL-TQALRR  120 (450)
T ss_pred             CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCcee-eccceeeeecccHHHHH-HHHHHH
Confidence            33457899999999999999999999999864  444 78888888777777643 334433

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=98.51  E-value=2.4e-07  Score=68.79  Aligned_cols=79  Identities=29%  Similarity=0.460  Sum_probs=48.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe-eecCcccchhhhch
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK-IVNGPQVLDKYVGE   98 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~-~~~~~~~~~~~~~~   98 (121)
                      ++.|..++.+.. . .+...      .+ -+--..+++||.||||||||.+|-++|++++..... .++++++.+.-..+
T Consensus        25 GlVGQ~~AReAa-g-iiv~m------Ik-~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK   95 (398)
T PF06068_consen   25 GLVGQEKAREAA-G-IIVDM------IK-EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK   95 (398)
T ss_dssp             TEES-HHHHHHH-H-HHHHH------HH-TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred             cccChHHHHHHH-H-HHHHH------Hh-cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence            677887766654 2 12111      11 132357789999999999999999999999865322 26788888877777


Q ss_pred             hHHHHHHHHH
Q psy3632          99 SEANVRRLFA  108 (121)
Q Consensus        99 ~~~~i~~~f~  108 (121)
                      +| .+.+.|+
T Consensus        96 TE-~L~qa~R  104 (398)
T PF06068_consen   96 TE-ALTQAFR  104 (398)
T ss_dssp             HH-HHHHHHH
T ss_pred             hH-HHHHHHH
Confidence            76 3444444

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=3e-08  Score=71.75  Aligned_cols=61  Identities=21%  Similarity=0.282  Sum_probs=45.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh--hhchhHHHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK--YVGESEANVRRLFADAE  111 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~f~~a~  111 (121)
                      ++...-+.|.||+|+||||+.|+||+...++.+.+..+.+..-+  .....++++--+||+..
T Consensus        25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA   87 (345)
T COG1118          25 IKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA   87 (345)
T ss_pred             ecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechh
Confidence            34455588999999999999999999999999998766663221  13344666777777654

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.50  E-value=1e-07  Score=67.12  Aligned_cols=43  Identities=23%  Similarity=0.428  Sum_probs=33.4

Q ss_pred             HHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          44 EVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        44 ~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .++++++++.  ...+.+.|||||||||+.+.+|+...+..+.+.
T Consensus        17 ~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~   61 (248)
T COG1116          17 EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL   61 (248)
T ss_pred             EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            3344444444  455999999999999999999999988888753

>PRK13948 shikimate kinase; Provisional

Probab=98.49  E-value=2.9e-07  Score=62.51  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE   98 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~   98 (121)
                      ++..++|+|.+||||||+++.+|..++.++   ++....+....|.
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~---iD~D~~ie~~~g~   51 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHF---IDTDRYIERVTGK   51 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCE---EECCHHHHHHHhC
Confidence            457799999999999999999999998775   4455555555543

>PRK13947 shikimate kinase; Provisional

Probab=98.49  E-value=2.6e-07  Score=61.46  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=28.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      +|+++|+|||||||+++.+|..++.++   ++...++..
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~---id~d~~~~~   38 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGF---IDTDKEIEK   38 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCE---EECchhhhh
Confidence            589999999999999999999998875   334444443

>PRK13949 shikimate kinase; Provisional

Probab=98.49  E-value=3.1e-07  Score=61.56  Aligned_cols=28  Identities=29%  Similarity=0.386  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .|+|+|+||+||||+++.+|+.++.+++
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~i   30 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFI   30 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence            5899999999999999999999987643

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.48  E-value=2.9e-07  Score=70.74  Aligned_cols=48  Identities=31%  Similarity=0.426  Sum_probs=36.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.++.++.+ +..+...            ..+..++|+|||||||||+|+++|+.+..
T Consensus        15 divGq~~i~~~L-~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         15 EVVGQDHVKKLI-INALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             HccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            699998876655 4433221            23456899999999999999999998764

>PRK00625 shikimate kinase; Provisional

Probab=98.48  E-value=2.5e-07  Score=62.31  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=28.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      +|+|+|.||+||||+++.+|..++.++   ++...++..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~---id~D~~I~~   37 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPF---FDTDDLIVS   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCE---EEhhHHHHH
Confidence            489999999999999999999998775   334444443

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.48  E-value=3.3e-07  Score=60.79  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=26.5

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .+..++|+|+|||||||+++.+|..++..+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~   32 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDF   32 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence            456799999999999999999999998654

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.7e-07  Score=67.39  Aligned_cols=57  Identities=33%  Similarity=0.561  Sum_probs=43.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchhH-HHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGESE-ANVRRLFADAE  111 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~~-~~i~~~f~~a~  111 (121)
                      ..+++|.||.|||||.||..+|+.++.+|-. -+...+- ..|+|+.- ..+.++.|.|.
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFai-ADATtLTEAGYVGEDVENillkLlqaad  155 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAI-ADATTLTEAGYVGEDVENILLKLLQAAD  155 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCeee-ccccchhhccccchhHHHHHHHHHHHcc
Confidence            3479999999999999999999999999643 5555554 46999984 44556666543

>PRK08118 topology modulation protein; Reviewed

Probab=98.48  E-value=3.4e-07  Score=61.26  Aligned_cols=29  Identities=41%  Similarity=0.673  Sum_probs=25.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      .|+++||||+||||+|+.|+..++.+.+.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~   31 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHH   31 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcee
Confidence            48999999999999999999999887543

>PRK04195 replication factor C large subunit; Provisional

Probab=98.48  E-value=2.7e-07  Score=71.00  Aligned_cols=55  Identities=31%  Similarity=0.467  Sum_probs=41.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ++.|.+++++++ +..+.....        | .++..++|+||||+|||++|+++|+.++.....
T Consensus        15 dlvg~~~~~~~l-~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ie   69 (482)
T PRK04195         15 DVVGNEKAKEQL-REWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIE   69 (482)
T ss_pred             HhcCCHHHHHHH-HHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            589999988887 554432221        1 236689999999999999999999999876444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.46  E-value=1.2e-07  Score=59.54  Aligned_cols=25  Identities=36%  Similarity=0.822  Sum_probs=23.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |++.|||||||||+|+.+|..++..
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~   26 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFP   26 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCe
Confidence            7899999999999999999998755

...

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.45  E-value=7.6e-07  Score=72.73  Aligned_cols=62  Identities=16%  Similarity=0.245  Sum_probs=45.2

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCC---------CeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNARE---------PKIVNGPQVL--DKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      ....+++|+||||||||++++.+|..+....         +..++.+.+.  ..+.|+.+..++.+|+++++.
T Consensus       206 ~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~  278 (852)
T TIGR03345       206 RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS  278 (852)
T ss_pred             CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence            3455799999999999999999999874221         1112333343  257888999999999998653

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.44  E-value=1.5e-07  Score=62.49  Aligned_cols=54  Identities=28%  Similarity=0.454  Sum_probs=35.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      |.+.|||||||||+++.+|..++.++   ++.+.+......+..-.+.+.-+.|+++
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~---vsaG~iFR~~A~e~gmsl~ef~~~AE~~   56 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKL---VSAGTIFREMARERGMSLEEFSRYAEED   56 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCce---eeccHHHHHHHHHcCCCHHHHHHHHhcC
Confidence            67899999999999999999999875   4444444333333222344444455443

>KOG0735|consensus

Probab=98.43  E-value=4.6e-07  Score=71.90  Aligned_cols=65  Identities=20%  Similarity=0.253  Sum_probs=55.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC---CeeecCcccchhhhchhHHHHHHHHHHHHHHHHhhh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE---PKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVS  118 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~~~~~  118 (121)
                      ..+++|.||+|||||.|+++++.++..+.   +.+++++.+-...+....+.++.+|..|..++|++=
T Consensus       431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiI  498 (952)
T KOG0735|consen  431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSII  498 (952)
T ss_pred             cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEE
Confidence            56799999999999999999999987653   344778877777777788889999999999999863

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.42  E-value=8.6e-07  Score=67.07  Aligned_cols=73  Identities=25%  Similarity=0.461  Sum_probs=47.1

Q ss_pred             ccCCcHHHHHH--HHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhc
Q psy3632          20 GIGGLDKEFTA--IFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG   97 (121)
Q Consensus        20 ~i~Gl~~~~~~--i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~   97 (121)
                      ++.|.++.+..  .+++.+..             ....+++|+||||||||++|+++|+.++..+.. ++...       
T Consensus        13 d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~-l~a~~-------   71 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA-LSAVT-------   71 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-Eeccc-------
Confidence            58888877554  11333321             123469999999999999999999998877544 32221       


Q ss_pred             hhHHHHHHHHHHHHHH
Q psy3632          98 ESEANVRRLFADAEEE  113 (121)
Q Consensus        98 ~~~~~i~~~f~~a~~~  113 (121)
                      .....++.+++.++..
T Consensus        72 ~~~~~ir~ii~~~~~~   87 (413)
T PRK13342         72 SGVKDLREVIEEARQR   87 (413)
T ss_pred             ccHHHHHHHHHHHHHh
Confidence            1234466777776543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=7.5e-07  Score=70.59  Aligned_cols=84  Identities=24%  Similarity=0.305  Sum_probs=52.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC-----cccc--
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG-----PQVL--   92 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~-----~~~~--   92 (121)
                      |.-||+++++.+ -+.+....       ...-.-..-++|+||||+|||++++.||..++..|+.+.-+     +++.  
T Consensus       324 dHYGLekVKeRI-lEyLAV~~-------l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH  395 (782)
T COG0466         324 DHYGLEKVKERI-LEYLAVQK-------LTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH  395 (782)
T ss_pred             cccCchhHHHHH-HHHHHHHH-------HhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence            467899988887 44432221       11111123477899999999999999999999998876322     2222  


Q ss_pred             -hhhhchhHHHHHHHHHHHH
Q psy3632          93 -DKYVGESEANVRRLFADAE  111 (121)
Q Consensus        93 -~~~~~~~~~~i~~~f~~a~  111 (121)
                       ..|.|...-++-+-...|.
T Consensus       396 RRTYIGamPGrIiQ~mkka~  415 (782)
T COG0466         396 RRTYIGAMPGKIIQGMKKAG  415 (782)
T ss_pred             cccccccCChHHHHHHHHhC
Confidence             2467766555544444443

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.41  E-value=1.1e-06  Score=71.91  Aligned_cols=62  Identities=21%  Similarity=0.379  Sum_probs=45.1

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC---------CCeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR---------EPKIVNGPQVL--DKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      ....+++|+||||+|||++++++|..+...         .+..++.+.++  ..|.|+.++.++.+|+.+++.
T Consensus       192 ~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~  264 (852)
T TIGR03346       192 RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS  264 (852)
T ss_pred             CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc
Confidence            445679999999999999999999986321         11113334443  357788899999999988653

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14532 adenylate kinase; Provisional

Probab=98.40  E-value=5.5e-07  Score=60.91  Aligned_cols=36  Identities=22%  Similarity=0.493  Sum_probs=28.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      .+++.|||||||||+++.+|..++...   ++.++++..
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~---is~~d~lr~   37 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQ---LSTGDMLRA   37 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeE---EeCcHHHHH
Confidence            488999999999999999999987553   455555544

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.40  E-value=2.3e-07  Score=59.75  Aligned_cols=29  Identities=45%  Similarity=0.792  Sum_probs=25.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      +|+|+||||||||++++.+|..++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~   29 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIR   29 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence            48999999999999999999999776544

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.40  E-value=6.9e-07  Score=66.56  Aligned_cols=47  Identities=34%  Similarity=0.412  Sum_probs=36.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++.+ +..+...            +.+..++|+||+|+||||+|+++|+.+.
T Consensus        17 ~iiGq~~~~~~l-~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         17 DIIGQKHIVTAI-SNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             hccChHHHHHHH-HHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            689999988876 4333211            2344589999999999999999999885

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.40  E-value=2.1e-07  Score=65.40  Aligned_cols=59  Identities=15%  Similarity=0.260  Sum_probs=44.0

Q ss_pred             cCCChHHHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhc
Q psy3632          39 RVFPPEVVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG   97 (121)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~   97 (121)
                      .+.++.+++++.++.++|  ..+.||+|||||++.|.+.+++.+..+.+...+..+.....
T Consensus        17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~   77 (263)
T COG1127          17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSE   77 (263)
T ss_pred             ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCH
Confidence            344556677777777665  67899999999999999999999998887544444444333

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.40  E-value=2.3e-07  Score=65.92  Aligned_cols=68  Identities=15%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             ChHHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch-hHHHHHHHHHH
Q psy3632          42 PPEVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE-SEANVRRLFAD  109 (121)
Q Consensus        42 ~~~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~f~~  109 (121)
                      +....+++.++.  ..-++|.||+||||||+.|.|.+...++.+.+...++.++.+..- -.+.+..+.|.
T Consensus        13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQq   83 (309)
T COG1125          13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ   83 (309)
T ss_pred             CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence            334444544444  445889999999999999999999999999886666666554332 23445444443

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.39  E-value=1.3e-07  Score=64.55  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=46.2

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchhHHHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGESEANVRRLFADAE  111 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~f~~a~  111 (121)
                      ++....+.+.|.+|+||||+|+.+|+...+..+.+....... -+-+.-..+.+|++||++.
T Consensus        36 L~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn   97 (267)
T COG4167          36 LREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN   97 (267)
T ss_pred             ecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence            344566999999999999999999999999988875444433 2333334677999999764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.39  E-value=5e-07  Score=63.15  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .+....-+.+.||+|||||||...++....++.+.+...+..+
T Consensus        27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~   69 (226)
T COG1136          27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDL   69 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEc
Confidence            3444556999999999999999999999988888764444333

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.37  E-value=6.9e-07  Score=67.29  Aligned_cols=57  Identities=25%  Similarity=0.422  Sum_probs=42.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+.+++.+ +..+......   +..++...+..++|+||+|+|||++|+++|+.+..
T Consensus         6 ~IiGq~~~~~~L-~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c   62 (394)
T PRK07940          6 DLVGQEAVVAEL-RAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC   62 (394)
T ss_pred             hccChHHHHHHH-HHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            689999998887 6666544321   12233345677999999999999999999997643

>PLN03025 replication factor C subunit; Provisional

Probab=98.36  E-value=8e-07  Score=65.04  Aligned_cols=45  Identities=27%  Similarity=0.451  Sum_probs=33.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.++.+..+ +..+..             ....+++|+||||||||++++++|+++
T Consensus        14 ~~~g~~~~~~~L-~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         14 DIVGNEDAVSRL-QVIARD-------------GNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             HhcCcHHHHHHH-HHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            578888877766 433221             112359999999999999999999987

>PRK07261 topology modulation protein; Provisional

Probab=98.36  E-value=9e-07  Score=59.39  Aligned_cols=28  Identities=32%  Similarity=0.489  Sum_probs=24.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .++++|+||+||||+++.++..++.+.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i   29 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVL   29 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeE
Confidence            3889999999999999999999876643

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=98.35  E-value=2.5e-07  Score=59.35  Aligned_cols=30  Identities=37%  Similarity=0.593  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++|.|+||+|||++++++|+.++..+..+
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RI   30 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRI   30 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence            489999999999999999999998886554

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.35  E-value=5.5e-07  Score=61.95  Aligned_cols=70  Identities=17%  Similarity=0.274  Sum_probs=50.5

Q ss_pred             HHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632          45 VVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        45 ~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      +.+...++.+.|  -.|.||+|+|||||...+++.+..+.+.+...+..+..|.++...+.-.+..+...-.
T Consensus        16 vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~   87 (252)
T COG4604          16 VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHIN   87 (252)
T ss_pred             eeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence            344444444443  6699999999999999999999999999877777777787776555555555544433

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.34  E-value=7.6e-07  Score=62.50  Aligned_cols=49  Identities=18%  Similarity=0.384  Sum_probs=37.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE   98 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~   98 (121)
                      .+.....+.+.||+|+|||||.|++++..+...+.+...+.-+.+..+.
T Consensus        26 ~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k   74 (258)
T COG3638          26 EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGK   74 (258)
T ss_pred             EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchH
Confidence            4455566999999999999999999999988888875555444444433

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.34  E-value=8.7e-07  Score=68.02  Aligned_cols=48  Identities=29%  Similarity=0.464  Sum_probs=36.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ +..+...            ..+..++|+||+||||||+|+++|+.+..
T Consensus        19 dvVGQe~iv~~L-~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc   66 (484)
T PRK14956         19 DVIHQDLAIGAL-QNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNC   66 (484)
T ss_pred             HHhChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            589999888876 4333211            12345899999999999999999998865

>KOG0745|consensus

Probab=98.33  E-value=8.4e-07  Score=67.08  Aligned_cols=58  Identities=34%  Similarity=0.650  Sum_probs=47.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc-hhhhchh-HHHHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL-DKYVGES-EANVRRLFADAEEE  113 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~~~f~~a~~~  113 (121)
                      .+|||.||+|+|||.|++.+|+.++.++. +.++..+- ..|+|+. +.-|..+.+.|.-+
T Consensus       227 SNvLllGPtGsGKTllaqTLAr~ldVPfa-IcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n  286 (564)
T KOG0745|consen  227 SNVLLLGPTGSGKTLLAQTLARVLDVPFA-ICDCTTLTQAGYVGEDVESVIQKLLQEAEYN  286 (564)
T ss_pred             ccEEEECCCCCchhHHHHHHHHHhCCCeE-EecccchhhcccccccHHHHHHHHHHHccCC
Confidence            46999999999999999999999999965 47776665 4689987 66678888777543

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.33  E-value=6e-07  Score=64.08  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=27.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...++|.||||||||++|+++|..++.++..+
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i   52 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI   52 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            45699999999999999999999988876553

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.32  E-value=1e-06  Score=59.39  Aligned_cols=40  Identities=18%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .+.+...++|.||+|+||||+++++++.+.+..+.+....
T Consensus        21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g   60 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG   60 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence            3445556899999999999999999999888777764433

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.32  E-value=5.2e-08  Score=68.63  Aligned_cols=69  Identities=19%  Similarity=0.361  Sum_probs=45.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee-cCcccch-hhhchhHHHHHHHHHHHHHHHHhhh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLD-KYVGESEANVRRLFADAEEEEKRVS  118 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~-~~~~~~~-~~~~~~~~~i~~~f~~a~~~~~~~~  118 (121)
                      .+.....+++.|++||||||+++.+++.+.+..+.+. ++..... ....+-.+++-.+||.+..+-...+
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t   96 (235)
T COG1122          26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT   96 (235)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence            3444556999999999999999999999998877763 3322221 2233334445556766665554443

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.32  E-value=1.4e-06  Score=70.28  Aligned_cols=63  Identities=25%  Similarity=0.351  Sum_probs=44.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcC---CC------CeeecCcccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA---RE------PKIVNGPQVL--DKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~---~~------~~~~~~~~~~--~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      .....+++|+||||+|||++++++|...-.   +.      +..++...++  ..|.|+.+.+++.+|+.+++.
T Consensus       204 r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~  277 (758)
T PRK11034        204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD  277 (758)
T ss_pred             ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhc
Confidence            344668999999999999999999986511   11      1112223333  356788899999999988754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.32  E-value=8.1e-07  Score=61.35  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   61 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR   61 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            3445556899999999999999999999877666653

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.31  E-value=1.3e-06  Score=56.87  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=24.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +++++|+|||||||+++.+|..++..+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~   27 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPF   27 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence            378999999999999999999997764

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.31  E-value=1.4e-06  Score=55.21  Aligned_cols=26  Identities=62%  Similarity=1.000  Sum_probs=23.7

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ....++++||||+|||++++.++..+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35579999999999999999999998

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.30  E-value=2.1e-07  Score=64.39  Aligned_cols=41  Identities=22%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +.++..+.|.||+|+|||||++++++...+..+.+
T Consensus        17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (220)
T cd03263          17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA   59 (220)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            344443  44455689999999999999999999987766665

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.30  E-value=9.4e-07  Score=60.88  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.|.||+|+||||+++++++.+.+..+.+.
T Consensus        24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~   60 (214)
T TIGR02673        24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR   60 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            3444556899999999999999999999877666653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=1.4e-06  Score=65.57  Aligned_cols=48  Identities=25%  Similarity=0.377  Sum_probs=36.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ +..+..           + +.+..++|+||+|+||||+|+++|+.+..
T Consensus        17 eiiGq~~~~~~L-~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955         17 DITAQEHITRTI-QNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             hccChHHHHHHH-HHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            588988877765 443321           1 23456999999999999999999998854

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.30  E-value=6.1e-07  Score=63.09  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc-ccchh-hhchhHHHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP-QVLDK-YVGESEANVRRLFADAE  111 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~-~~~~~-~~~~~~~~i~~~f~~a~  111 (121)
                      .+..+..+.++|++||||||++|++++...+..+.+...+ .+..+ ......+.++.+||+..
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~   92 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPY   92 (252)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCc
Confidence            3444556889999999999999999999999888875444 22221 11122445666776643

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=1.4e-06  Score=67.60  Aligned_cols=48  Identities=25%  Similarity=0.362  Sum_probs=37.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ +..+...            ..+..+||+||+|+|||++|+++|+.+..
T Consensus        17 divGq~~v~~~L-~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (509)
T PRK14958         17 EVIGQAPVVRAL-SNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNC   64 (509)
T ss_pred             HhcCCHHHHHHH-HHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            699999988877 4433211            22446899999999999999999998854

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=1.4e-06  Score=67.18  Aligned_cols=47  Identities=38%  Similarity=0.492  Sum_probs=36.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++.+ +..+..           + +.+..++|+||+|+||||+|+.+|+.+.
T Consensus        14 dliGQe~vv~~L-~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln   60 (491)
T PRK14964         14 DLVGQDVLVRIL-RNAFTL-----------N-KIPQSILLVGASGVGKTTCARIISLCLN   60 (491)
T ss_pred             HhcCcHHHHHHH-HHHHHc-----------C-CCCceEEEECCCCccHHHHHHHHHHHHc
Confidence            699999888766 433321           1 3355799999999999999999999763

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=98.30  E-value=2.6e-06  Score=69.08  Aligned_cols=58  Identities=22%  Similarity=0.313  Sum_probs=40.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ++-|++++++.+ .+.+....       ..+-.....++|+||||+|||++++.+|+.++.+++.+
T Consensus       323 ~~~g~~~vK~~i-~~~l~~~~-------~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i  380 (784)
T PRK10787        323 DHYGLERVKDRI-LEYLAVQS-------RVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM  380 (784)
T ss_pred             hccCHHHHHHHH-HHHHHHHH-------hcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence            467888888877 33332111       11112334589999999999999999999999886654

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.29  E-value=1.2e-06  Score=67.14  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=39.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC-eeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREP-KIVNGPQVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      +..+.-++|+||+||||||+++  +....++.+ .+...+.-+..........+|.+||.-++.
T Consensus        29 i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ~fn~~   90 (504)
T TIGR03238        29 LPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFDGFNQS   90 (504)
T ss_pred             ecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHhhhcC
Confidence            3445569999999999999999  444444444 343333333333334457788999986554

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.29  E-value=6.6e-07  Score=65.68  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ++...++++|.||||||||++++.+|..++.++..+
T Consensus        60 ~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV   95 (327)
T TIGR01650        60 GFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRV   95 (327)
T ss_pred             HHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEE
Confidence            344567899999999999999999999999887654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.29  E-value=1.1e-06  Score=61.61  Aligned_cols=37  Identities=22%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|||||||+++|++.+.+..+.+.
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~   60 (243)
T TIGR02315        24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL   60 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEE
Confidence            3445556889999999999999999999877666653

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.29  E-value=4.5e-06  Score=67.18  Aligned_cols=52  Identities=37%  Similarity=0.607  Sum_probs=36.7

Q ss_pred             ccCCcHHHHHH--HHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTA--IFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~--i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ++.|.++.+.+  .+++.+.             .....+++|+||||||||++|+++++.....+..
T Consensus        29 d~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~   82 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSS   82 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcCccee
Confidence            47788887653  2233221             1223469999999999999999999998776544

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.28  E-value=6.2e-07  Score=61.95  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus        26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   61 (218)
T cd03255          26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV   61 (218)
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence            344555689999999999999999999987776765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.28  E-value=1e-06  Score=60.60  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   59 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR   59 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            3445556899999999999999999999877766653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.28  E-value=2.8e-06  Score=58.80  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=23.9

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+..++|+||+|||||+++++++....
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~   63 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAE   63 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999998764

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.28  E-value=5.6e-06  Score=61.56  Aligned_cols=48  Identities=25%  Similarity=0.434  Sum_probs=37.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ ...+...            ..+.+++|+||+|+|||++++++++.+..
T Consensus        18 ~iig~~~~~~~l-~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~   65 (367)
T PRK14970         18 DVVGQSHITNTL-LNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQ   65 (367)
T ss_pred             hcCCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            588999988776 4443221            23567999999999999999999998865

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.28  E-value=1.4e-06  Score=58.50  Aligned_cols=26  Identities=27%  Similarity=0.406  Sum_probs=23.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -+++.|||||||||+++.++..++..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~~   30 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGFT   30 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            47889999999999999999988654

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.28  E-value=1.7e-06  Score=67.10  Aligned_cols=48  Identities=27%  Similarity=0.371  Sum_probs=36.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ +..+..           + ..+..++|+||+|+||||+|+++|+.+..
T Consensus        22 dliGq~~vv~~L-~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         22 ELQGQEVLVKVL-SYTILN-----------D-RLAGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             HhcCcHHHHHHH-HHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            588999988876 332221           1 23557999999999999999999999864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.28  E-value=1.3e-06  Score=59.63  Aligned_cols=67  Identities=21%  Similarity=0.330  Sum_probs=46.1

Q ss_pred             hHHHHHhCCCCC--ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh----HHHHHHHHHH
Q psy3632          43 PEVVEQLGCQHV--KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES----EANVRRLFAD  109 (121)
Q Consensus        43 ~~~~~~~~~~~~--~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~f~~  109 (121)
                      ++.++++.+..+  .-+.++||+|+||||+.|.|..+..++.+.+......++..-+..    .+.|-.+||+
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD   87 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD   87 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeee
Confidence            455566554444  447889999999999999999999999888765555554443332    3344446654

>KOG0991|consensus

Probab=98.28  E-value=1.7e-06  Score=60.99  Aligned_cols=45  Identities=29%  Similarity=0.536  Sum_probs=33.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ||.|.++.+..+ .           ++..-|  .-.++++.||||+||||.+.++|+++
T Consensus        28 dIVGNe~tv~rl-~-----------via~~g--nmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   28 DIVGNEDTVERL-S-----------VIAKEG--NMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             HhhCCHHHHHHH-H-----------HHHHcC--CCCceEeeCCCCCchhhHHHHHHHHH
Confidence            688888887766 1           111111  13369999999999999999999986

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.27  E-value=1.7e-06  Score=68.63  Aligned_cols=48  Identities=27%  Similarity=0.383  Sum_probs=37.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ ...+...            +.+..++|+||+|+|||++|+++|+.+..
T Consensus        16 dVIGQe~vv~~L-~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC   63 (702)
T PRK14960         16 ELVGQNHVSRAL-SSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNC   63 (702)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            699999987776 4443211            23456899999999999999999999864

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.26  E-value=1.6e-06  Score=67.16  Aligned_cols=47  Identities=28%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.++.++.+ ...+...            ..+..++|+||||+||||+|+++|+.+.
T Consensus        15 dvvGq~~v~~~L-~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         15 EVVGQEHVKEVL-LAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             HhcChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            689999887776 4443321            2234479999999999999999999885

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.26  E-value=1.4e-06  Score=60.89  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.+.+...+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~   63 (233)
T cd03258          26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL   63 (233)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            34455666999999999999999999999887767653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=98.26  E-value=2.2e-06  Score=63.34  Aligned_cols=51  Identities=29%  Similarity=0.544  Sum_probs=37.6

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +++|+  +|.|.++.++.+....+.              ....+++|.|+||+|||++++++++.+.
T Consensus         4 ~~~f~--~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP   54 (334)
T PRK13407          4 PFPFS--AIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLP   54 (334)
T ss_pred             CCCHH--HhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCC
Confidence            44555  589999988876221110              1124799999999999999999999984

>PRK03839 putative kinase; Provisional

Probab=98.26  E-value=8.4e-07  Score=59.68  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=24.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      |+|.|+||+||||+++.+|..++.+++
T Consensus         3 I~l~G~pGsGKsT~~~~La~~~~~~~i   29 (180)
T PRK03839          3 IAITGTPGVGKTTVSKLLAEKLGYEYV   29 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            889999999999999999999987753

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.26  E-value=3.2e-07  Score=63.15  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=28.1

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+. .+.|.||+|+||||+++++++.+.+..+.+
T Consensus        23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   56 (211)
T cd03264          23 LGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI   56 (211)
T ss_pred             EcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence            3444 678999999999999999999887766665

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.26  E-value=1.6e-06  Score=61.80  Aligned_cols=61  Identities=20%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhc-hhHHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVG-ESEANVRRLFADA  110 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~f~~a  110 (121)
                      .+.....+.|+|.+||||||++|++.+...+..+.+...+..+..... +..+.+.++.+..
T Consensus        35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~V   96 (268)
T COG4608          35 SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKV   96 (268)
T ss_pred             EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHh
Confidence            344556699999999999999999999999999998766554433322 2334466665553

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1e-06  Score=67.16  Aligned_cols=45  Identities=31%  Similarity=0.607  Sum_probs=35.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ||.|.+..++.+ .               .......+++++||||||||++++-+...+.+
T Consensus       180 DV~GQ~~AKrAl-e---------------iAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPp  224 (490)
T COG0606         180 DVKGQEQAKRAL-E---------------IAAAGGHNLLLVGPPGTGKTMLASRLPGLLPP  224 (490)
T ss_pred             hhcCcHHHHHHH-H---------------HHHhcCCcEEEecCCCCchHHhhhhhcccCCC
Confidence            689999888877 1               12223557999999999999999999988765

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.25  E-value=2.1e-07  Score=66.89  Aligned_cols=60  Identities=25%  Similarity=0.342  Sum_probs=44.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-----hhhchhHHHHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-----KYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~f~~a~~~  113 (121)
                      +.-..++|++|+|||+++++||+...++.+.+.-.+....     -+...-.+++..+||+||--
T Consensus        24 ~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLF   88 (352)
T COG4148          24 RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF   88 (352)
T ss_pred             CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccc
Confidence            3446799999999999999999999998887743333321     13444567788999998753

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.25  E-value=2.9e-07  Score=63.81  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   57 (220)
T cd03265          22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA   57 (220)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555689999999999999999999887766655

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PHA02244 ATPase-like protein

Probab=98.25  E-value=2e-06  Score=64.16  Aligned_cols=31  Identities=29%  Similarity=0.333  Sum_probs=27.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ...++|+||+|||||++|+++|..++.++..
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~  149 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYF  149 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4569999999999999999999999888655

>PRK14530 adenylate kinase; Provisional

Probab=98.25  E-value=1.3e-06  Score=60.50  Aligned_cols=27  Identities=30%  Similarity=0.581  Sum_probs=24.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .|++.||||+||||+++.||..++..+
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~~~~   31 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFGVEH   31 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            589999999999999999999998654

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.24  E-value=1.5e-06  Score=60.17  Aligned_cols=38  Identities=18%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~   63 (221)
T TIGR02211        26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVL   63 (221)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            34455666889999999999999999999877767653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.24  E-value=1e-06  Score=60.66  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI   57 (213)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            445566699999999999999999999987766655

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.24  E-value=9.5e-07  Score=56.88  Aligned_cols=23  Identities=43%  Similarity=0.972  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++++|||||||||+++.++..++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            68899999999999999998887

...

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.24  E-value=2e-06  Score=70.14  Aligned_cols=49  Identities=27%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +|.|.+..++.+ +..+...            +.+..+||+||+||||||+|+++|+.+...
T Consensus        17 dIIGQe~Iv~~L-knaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         17 QMVGQSHVLHAL-TNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             HhcCcHHHHHHH-HHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            589999988876 4433211            224457999999999999999999998653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.24  E-value=1.6e-07  Score=69.80  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      .+..+..+.|.||+||||||++++||+...+..+.+...
T Consensus        26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~   64 (356)
T PRK11650         26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIG   64 (356)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence            344455588999999999999999999988877776433

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.23  E-value=9.8e-07  Score=60.67  Aligned_cols=36  Identities=25%  Similarity=0.319  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (210)
T cd03269          22 SVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV   57 (210)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555688999999999999999999887666654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.23  E-value=4.4e-06  Score=58.13  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=23.7

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .....++|+||+|||||++++++++..
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~   66 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADA   66 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999999876

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.23  E-value=3.9e-07  Score=62.99  Aligned_cols=41  Identities=24%  Similarity=0.307  Sum_probs=31.6

Q ss_pred             HHHHh--CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQL--GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~--~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++  .+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus        20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   62 (218)
T cd03266          20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA   62 (218)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            34443  344555699999999999999999999987766654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.23  E-value=1e-06  Score=59.77  Aligned_cols=36  Identities=17%  Similarity=0.369  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.||+|+|||||++++++...+..+.+
T Consensus        14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   49 (190)
T TIGR01166        14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV   49 (190)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE
Confidence            345556689999999999999999999987766665

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.23  E-value=4.2e-07  Score=66.05  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i   50 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA   50 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555688999999999999999999988776765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.22  E-value=3e-06  Score=56.91  Aligned_cols=29  Identities=41%  Similarity=0.670  Sum_probs=25.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ...|+|+|++|+||||+++.+|..++.++
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~   32 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF   32 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcE
Confidence            34699999999999999999999987664

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.22  E-value=2.6e-06  Score=62.25  Aligned_cols=47  Identities=34%  Similarity=0.556  Sum_probs=34.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ ...+..             ....+++|+||||||||++|+++++.+..
T Consensus        16 ~~~g~~~~~~~L-~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~   62 (337)
T PRK12402         16 DILGQDEVVERL-SRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYG   62 (337)
T ss_pred             HhcCCHHHHHHH-HHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            578888877776 433321             11236999999999999999999998753

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.22  E-value=1e-06  Score=61.65  Aligned_cols=36  Identities=22%  Similarity=0.431  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i   57 (235)
T cd03261          22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV   57 (235)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555699999999999999999999987766665

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.22  E-value=1.9e-06  Score=60.37  Aligned_cols=36  Identities=19%  Similarity=0.391  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||++++|++.+.+..+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   58 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV   58 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            344555689999999999999999999987666655

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.22  E-value=1.9e-06  Score=59.83  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   60 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW   60 (222)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            3455566899999999999999999999877767653

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.22  E-value=1.1e-06  Score=60.23  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   57 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI   57 (205)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            344555699999999999999999999987776765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=98.22  E-value=2e-06  Score=69.52  Aligned_cols=60  Identities=27%  Similarity=0.399  Sum_probs=40.2

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCC----CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGC----QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~----~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      |.|.++.++.+ .+.+...        ..|+    +|...++|+||||||||.+|+++|..++.+++. ++.++
T Consensus       460 ViGQ~~ai~~l-~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~-id~se  523 (758)
T PRK11034        460 VFGQDKAIEAL-TEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR-FDMSE  523 (758)
T ss_pred             EeCcHHHHHHH-HHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEE-eechh
Confidence            56777777776 3333211        1122    223468999999999999999999999877544 44443

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.21  E-value=1.1e-06  Score=61.43  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   57 (236)
T cd03219          22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV   57 (236)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence            344455688999999999999999999987766665

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.21  E-value=1.2e-06  Score=60.20  Aligned_cols=36  Identities=22%  Similarity=0.490  Sum_probs=29.5

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.+...+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~   59 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL   59 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            344556889999999999999999999877666653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.21  E-value=2.9e-06  Score=66.29  Aligned_cols=48  Identities=23%  Similarity=0.457  Sum_probs=36.4

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ ...+...            +.+..++|+||+|+|||++|+++|+.+..
T Consensus        17 diiGq~~~v~~L-~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         17 EVAGQQHALNSL-VHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            588999988876 4333211            23445899999999999999999998753

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=2.8e-06  Score=57.90  Aligned_cols=46  Identities=20%  Similarity=0.351  Sum_probs=35.6

Q ss_pred             hHHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          43 PEVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        43 ~~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      ..+|..+++  .+..-+.+.||+|+|||||.|.+|+.+.+..+.+...
T Consensus        15 ~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~   62 (209)
T COG4133          15 RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ   62 (209)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence            344555544  4455588999999999999999999999998887444

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.21  E-value=1.3e-06  Score=60.64  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   62 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI   62 (228)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            344455699999999999999999999987766655

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.21  E-value=5.6e-06  Score=61.25  Aligned_cols=58  Identities=22%  Similarity=0.443  Sum_probs=40.3

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..+++..+  .+.|-+++++++ ...+...+.        + ..+.+++++||||||||++++.++..+.
T Consensus         8 l~~~~~p~--~l~gRe~e~~~l-~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~   65 (365)
T TIGR02928         8 LEPDYVPD--RIVHRDEQIEEL-AKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELE   65 (365)
T ss_pred             CCCCCCCC--CCCCcHHHHHHH-HHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444444  489999999988 433322111        1 2345799999999999999999998764

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.21  E-value=3.8e-07  Score=63.86  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.+.||+|+|||||++++++...+..+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   58 (236)
T TIGR03864        23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI   58 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            345566699999999999999999999987666654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.20  E-value=1.2e-06  Score=59.96  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   55 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQV   55 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            44455689999999999999999999987766765

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=98.20  E-value=3.2e-06  Score=62.73  Aligned_cols=55  Identities=25%  Similarity=0.473  Sum_probs=41.0

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+.+.|+  +|.|.++.+..++...+ .             +...|++|.|++|||||+++|+++..+..
T Consensus        10 ~~~~~pf~--~ivGq~~~k~al~~~~~-~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~   64 (350)
T CHL00081         10 ERPVFPFT--AIVGQEEMKLALILNVI-D-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPE   64 (350)
T ss_pred             cCCCCCHH--HHhChHHHHHHHHHhcc-C-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            34566666  59999998887733222 1             12347999999999999999999998754

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.20  E-value=1.3e-06  Score=60.27  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i   56 (213)
T cd03235          21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI   56 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence            344455689999999999999999999987766665

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.20  E-value=3e-06  Score=66.03  Aligned_cols=48  Identities=27%  Similarity=0.429  Sum_probs=36.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ ...+...            +.+..++|+||+|+||||+|+++|+.+..
T Consensus        17 divGq~~v~~~L-~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (527)
T PRK14969         17 ELVGQEHVVRAL-TNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNC   64 (527)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            589999988876 4433221            23445899999999999999999999854

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.20  E-value=1.3e-06  Score=60.14  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v   57 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI   57 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344556689999999999999999999987665654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.20  E-value=1.7e-06  Score=60.18  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh-----cCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML-----NAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~-----~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.+     .+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i   62 (227)
T cd03260          22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV   62 (227)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEE
Confidence            34455568999999999999999999998     6666665

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.19  E-value=1.4e-06  Score=60.68  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|||||||++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (230)
T TIGR03410        22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI   57 (230)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            344556699999999999999999999987766665

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.19  E-value=1.3e-06  Score=60.39  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   57 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI   57 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            345556699999999999999999999987666654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.19  E-value=2.1e-06  Score=57.37  Aligned_cols=41  Identities=17%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      +.+.+...+.+.||+|+||||+++++++.+.+..+.+...+
T Consensus        23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g   63 (171)
T cd03228          23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDG   63 (171)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC
Confidence            34455666999999999999999999999887777664333

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.19  E-value=1.6e-06  Score=58.29  Aligned_cols=39  Identities=23%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      +.+.++..+.+.||+|+||||+++++++...+..+.+..
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~   61 (178)
T cd03247          23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL   61 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence            344556679999999999999999999998877776543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.18  E-value=1.4e-06  Score=58.49  Aligned_cols=34  Identities=21%  Similarity=0.431  Sum_probs=26.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      |+++|||||||||+++.+|..++...   ++.++++.
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~---is~~d~lr   35 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTH---LSAGDLLR   35 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeE---EECChHHH
Confidence            68899999999999999999997542   44444443

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.18  E-value=1.4e-06  Score=60.93  Aligned_cols=36  Identities=14%  Similarity=0.300  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   66 (233)
T PRK11629         31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV   66 (233)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            344455688999999999999999999987766665

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.18  E-value=2.3e-06  Score=59.57  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i   67 (228)
T PRK10584         31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV   67 (228)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE
Confidence            3445566699999999999999999999987766665

>PRK14531 adenylate kinase; Provisional

Probab=98.18  E-value=1.9e-06  Score=58.31  Aligned_cols=27  Identities=33%  Similarity=0.603  Sum_probs=24.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .++++|||||||||+++.+|..++...
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~   30 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRH   30 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            589999999999999999999998664

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.18  E-value=4.3e-06  Score=60.81  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=37.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ++.|.++..+.+ ...+.          + + ..+..++++||||+|||++++++++.++.++..
T Consensus        22 ~~~~~~~~~~~l-~~~~~----------~-~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~   73 (316)
T PHA02544         22 ECILPAADKETF-KSIVK----------K-G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLF   73 (316)
T ss_pred             HhcCcHHHHHHH-HHHHh----------c-C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceE
Confidence            588888877776 43332          1 1 223456669999999999999999998766444

>KOG2004|consensus

Probab=98.18  E-value=3.9e-06  Score=66.78  Aligned_cols=81  Identities=26%  Similarity=0.393  Sum_probs=52.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHh-CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC-----cccc-
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQL-GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG-----PQVL-   92 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~-~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~-----~~~~-   92 (121)
                      |.-||+++++.+ -+.+.-.        .+ +-..+.-++|+||||.|||+++|.||+.++..|+.+.-+     +++. 
T Consensus       412 DHYgm~dVKeRI-LEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG  482 (906)
T KOG2004|consen  412 DHYGMEDVKERI-LEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG  482 (906)
T ss_pred             cccchHHHHHHH-HHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence            467899988887 4443222        11 111233477899999999999999999999988775222     2222 


Q ss_pred             --hhhhchhHHHHHHHHHH
Q psy3632          93 --DKYVGESEANVRRLFAD  109 (121)
Q Consensus        93 --~~~~~~~~~~i~~~f~~  109 (121)
                        ..|+|.+.-++-+..+.
T Consensus       483 HRRTYVGAMPGkiIq~LK~  501 (906)
T KOG2004|consen  483 HRRTYVGAMPGKIIQCLKK  501 (906)
T ss_pred             cceeeeccCChHHHHHHHh
Confidence              24777776665555544

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.18  E-value=3e-06  Score=67.53  Aligned_cols=48  Identities=29%  Similarity=0.441  Sum_probs=37.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ +..+...            +.+..+||+||+|+|||++|+++|+.+..
T Consensus        17 dIIGQe~vv~~L-~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC   64 (709)
T PRK08691         17 DLVGQEHVVKAL-QNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNC   64 (709)
T ss_pred             HHcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            699999988877 4443321            33557999999999999999999998754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.18  E-value=1.5e-06  Score=60.96  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=29.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (239)
T cd03296          24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI   59 (239)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555689999999999999999999987665654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.18  E-value=1.7e-06  Score=60.27  Aligned_cols=36  Identities=28%  Similarity=0.334  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   57 (232)
T cd03218          22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI   57 (232)
T ss_pred             EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            344555689999999999999999999987766654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.18  E-value=1.6e-06  Score=59.69  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=29.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   57 (213)
T cd03259          22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI   57 (213)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            344455688999999999999999999987766655

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.18  E-value=7e-07  Score=61.10  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+||||+++++++...+..+.+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~   59 (200)
T PRK13540         23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEIL   59 (200)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEE
Confidence            3445566999999999999999999999877767653

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.17  E-value=1.7e-06  Score=58.25  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=30.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   58 (178)
T cd03229          22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL   58 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            3444556889999999999999999999887767654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.17  E-value=5.5e-07  Score=57.70  Aligned_cols=35  Identities=20%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+...++++|++|+||||+++++++......+.+
T Consensus         8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i   42 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI   42 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE
T ss_pred             EcCCCEEEEEccCCCccccceeeeccccccccccc
Confidence            44566799999999999999999999987765665

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.17  E-value=4e-06  Score=66.01  Aligned_cols=47  Identities=23%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++.+ ...+..            -..+..++|+||+|+|||++|+++|+.+.
T Consensus        17 dIIGQe~iv~~L-~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~   63 (605)
T PRK05896         17 QIIGQELIKKIL-VNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAIN   63 (605)
T ss_pred             HhcCcHHHHHHH-HHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            588999888776 433321            12345699999999999999999999874

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.17  E-value=3.9e-06  Score=66.46  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=36.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ +..+..           + +.+..++|+||+|+||||+|+++|+.+..
T Consensus        17 eivGQe~i~~~L-~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c   64 (620)
T PRK14954         17 DITAQEHITHTI-QNSLRM-----------D-RVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (620)
T ss_pred             HhcCcHHHHHHH-HHHHHc-----------C-CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            588999888876 443321           1 33456999999999999999999998854

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.17  E-value=1.6e-06  Score=59.08  Aligned_cols=59  Identities=19%  Similarity=0.231  Sum_probs=42.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFAD  109 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~  109 (121)
                      .+....-+.+.||+|+||||+...||+...+..+.+...+..... ....++-+.++||+
T Consensus        21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~-~~P~~RPVSmlFQE   79 (231)
T COG3840          21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTA-SPPAERPVSMLFQE   79 (231)
T ss_pred             eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCc-CCcccCChhhhhhc
Confidence            344455699999999999999999999988888877433333322 22345668888886

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.17  E-value=1.9e-06  Score=60.06  Aligned_cols=36  Identities=17%  Similarity=0.373  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++...+..+.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   64 (225)
T PRK10247         29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL   64 (225)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence            344555689999999999999999999887766665

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.16  E-value=1.7e-06  Score=61.46  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   58 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI   58 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            344555699999999999999999999987666654

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.16  E-value=1.8e-06  Score=58.43  Aligned_cols=27  Identities=37%  Similarity=0.794  Sum_probs=23.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .+++.||||+||||+|+.||..++.+.
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~h   28 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPH   28 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            489999999999999999999976553

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.16  E-value=2.8e-06  Score=56.90  Aligned_cols=38  Identities=24%  Similarity=0.420  Sum_probs=30.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      +.+...+.+.||+|+|||||++++++.+.+..+.+...
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~   62 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD   62 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence            34455689999999999999999999988777765433

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.16  E-value=1.8e-06  Score=57.44  Aligned_cols=38  Identities=18%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.+.+...+.|.||+|+||||+++++++...+..+.+.
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~   58 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL   58 (163)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            34555667999999999999999999999887777654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.16  E-value=5.3e-07  Score=64.83  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=30.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+.
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   65 (279)
T PRK13650         29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII   65 (279)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            3445566999999999999999999999887777663

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.16  E-value=1.6e-06  Score=60.10  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=29.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   61 (220)
T cd03293          26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV   61 (220)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555689999999999999999999987666654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.16  E-value=1.7e-06  Score=58.36  Aligned_cols=37  Identities=16%  Similarity=0.139  Sum_probs=30.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   58 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT   58 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            3445556899999999999999999999887777653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.16  E-value=1.5e-06  Score=60.93  Aligned_cols=44  Identities=18%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             ChHHHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          42 PPEVVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        42 ~~~~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...+++++.+.  ++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i   78 (236)
T cd03267          33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV   78 (236)
T ss_pred             CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            34456665544  455688999999999999999999887665554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK06547 hypothetical protein; Provisional

Probab=98.16  E-value=1e-05  Score=54.43  Aligned_cols=31  Identities=23%  Similarity=0.315  Sum_probs=25.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ..+.-|++.|++||||||+++.++..++...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~   43 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAARTGFQL   43 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            3455688899999999999999999987653

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.16  E-value=2.6e-06  Score=59.45  Aligned_cols=37  Identities=22%  Similarity=0.438  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.+.||+|+||||+++++++.+.+..+.+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   60 (234)
T cd03251          24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL   60 (234)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEE
Confidence            3445556899999999999999999999877767653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.16  E-value=1.9e-06  Score=60.56  Aligned_cols=36  Identities=25%  Similarity=0.554  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++...+..+.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   59 (242)
T PRK11124         24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL   59 (242)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344556699999999999999999999987766665

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.15  E-value=2e-06  Score=58.65  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.++..+.|.||+|+||||+++++++...+..+.+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (195)
T PRK13541         21 ITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI   57 (195)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            3445566689999999999999999999987776665

>PRK13946 shikimate kinase; Provisional

Probab=98.15  E-value=5e-06  Score=56.30  Aligned_cols=30  Identities=27%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      ...|+++|++||||||+++.+|..++.+++
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i   39 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFL   39 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence            356999999999999999999999988753

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.15  E-value=2.5e-06  Score=59.34  Aligned_cols=42  Identities=19%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.+  .+...+.+.||+|+|||||++++++.+.+..+.+.
T Consensus        18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   61 (229)
T cd03254          18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL   61 (229)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            3444443  44455899999999999999999999877767653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.15  E-value=4.3e-06  Score=65.79  Aligned_cols=47  Identities=30%  Similarity=0.454  Sum_probs=36.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +|.|.+.+++.+ +..+..           + +.+..++|+||+|+||||+|+++|+.+.
T Consensus        14 eivGq~~i~~~L-~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~   60 (584)
T PRK14952         14 EVVGQEHVTEPL-SSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLN   60 (584)
T ss_pred             HhcCcHHHHHHH-HHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            688999888876 443321           1 2334589999999999999999999875

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.15  E-value=2.3e-06  Score=57.83  Aligned_cols=37  Identities=24%  Similarity=0.225  Sum_probs=31.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~   57 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE   57 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE
Confidence            4455667899999999999999999999888777764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.15  E-value=2e-06  Score=59.00  Aligned_cols=37  Identities=19%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.+.||+|+|||||++++++.+.+..+.+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~   59 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVL   59 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3444556899999999999999999999887777653

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=2e-06  Score=60.38  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (241)
T PRK10895         25 TVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI   60 (241)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            445566699999999999999999999987766655

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.15  E-value=5.2e-07  Score=69.87  Aligned_cols=61  Identities=23%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh---hchhHHHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY---VGESEANVRRLFADAE  111 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~f~~a~  111 (121)
                      +..+..+.|+|++||||||++|++++...+..+.+...+......   .....+.++.+||+..
T Consensus       314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~  377 (539)
T COG1123         314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY  377 (539)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcc
Confidence            344555889999999999999999999988877764433222111   2223455666777643

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.14  E-value=3.1e-06  Score=60.36  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   69 (265)
T TIGR02769        33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVS   69 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3445566899999999999999999999877767653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.14  E-value=3e-06  Score=56.84  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      +-++|+|+||+||||+++.++..++..++
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~   31 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWL   31 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCcc
Confidence            35889999999999999999999866543

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=2.1e-06  Score=60.39  Aligned_cols=37  Identities=22%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   61 (241)
T PRK14250         25 KFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL   61 (241)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3444556899999999999999999999877767653

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.14  E-value=1.8e-06  Score=64.12  Aligned_cols=37  Identities=27%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.....+.|.||+||||||++++||+...+..+.+.
T Consensus        28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   64 (351)
T PRK11432         28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF   64 (351)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence            3445556899999999999999999999988777663

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.14  E-value=5.4e-07  Score=65.51  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=29.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i   61 (303)
T TIGR01288        26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI   61 (303)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555699999999999999999999987766665

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.14  E-value=2.8e-06  Score=57.14  Aligned_cols=28  Identities=36%  Similarity=0.616  Sum_probs=24.2

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |...++|+||+|+|||.+|+++|..+..
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3456899999999999999999999984

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.14  E-value=2e-06  Score=60.03  Aligned_cols=37  Identities=22%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   56 (232)
T PRK10771         20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL   56 (232)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4455666799999999999999999999987766654

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.13  E-value=2.1e-06  Score=57.25  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   58 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI   58 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            445566699999999999999999999987766654

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.13  E-value=6.8e-07  Score=64.12  Aligned_cols=36  Identities=17%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   62 (274)
T PRK13647         27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV   62 (274)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence            344556699999999999999999999987776665

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.13  E-value=2.2e-06  Score=57.42  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~   58 (173)
T cd03230          22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK   58 (173)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            3445556999999999999999999999877666653

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.13  E-value=2.2e-06  Score=59.92  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus         7 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   42 (230)
T TIGR01184         7 TIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV   42 (230)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            344556699999999999999999999987766665

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.13  E-value=2.1e-06  Score=58.93  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   57 (208)
T cd03268          22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI   57 (208)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            344555688999999999999999999887666655

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.13  E-value=4.6e-06  Score=66.17  Aligned_cols=48  Identities=25%  Similarity=0.420  Sum_probs=37.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.++.++.+ +..+...            +.+..+||+||+|+||||+++.+|+.+..
T Consensus        17 dVIGQe~vv~~L-~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         17 TLVGQEHVVRAL-THALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             HHcCcHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            699999988877 4444321            22445899999999999999999999864

>PRK06893 DNA replication initiation factor; Validated

Probab=98.13  E-value=3.6e-06  Score=58.93  Aligned_cols=24  Identities=13%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..++|+||||||||+++.++|+++
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~   63 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHY   63 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            347899999999999999999886

>PRK06217 hypothetical protein; Validated

Probab=98.13  E-value=2.2e-06  Score=57.97  Aligned_cols=27  Identities=22%  Similarity=0.446  Sum_probs=24.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .|+|.|+|||||||+++.++..++.++
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~   29 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPH   29 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence            489999999999999999999998764

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.13  E-value=2e-06  Score=59.58  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.....+.|.||+|+||||+++++++...+..+.+
T Consensus         9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i   44 (213)
T PRK15177          9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF   44 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence            344556689999999999999999999987776765

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.13  E-value=2.7e-06  Score=63.01  Aligned_cols=36  Identities=14%  Similarity=0.230  Sum_probs=30.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.++..+.+.||+|+|||||+++|++...+..+.+.
T Consensus        28 i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~   63 (343)
T TIGR02314        28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI   63 (343)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            444556889999999999999999999988777763

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.12  E-value=2.2e-06  Score=60.54  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   58 (252)
T TIGR03005        22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ   58 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            4455666999999999999999999999877666653

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.12  E-value=2.9e-06  Score=62.83  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=29.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        28 i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~   63 (343)
T PRK11153         28 IPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL   63 (343)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            344555889999999999999999999887767653

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.12  E-value=2.3e-06  Score=60.10  Aligned_cols=36  Identities=25%  Similarity=0.459  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.+.||+|+|||||++++++.+.+..+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   58 (242)
T cd03295          23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI   58 (242)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            344556688999999999999999999987766655

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.12  E-value=3.4e-06  Score=58.60  Aligned_cols=37  Identities=16%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+.
T Consensus        36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   72 (226)
T cd03248          36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVL   72 (226)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence            3444556899999999999999999999877777653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.12  E-value=3.1e-06  Score=60.48  Aligned_cols=36  Identities=31%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++...+..+.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (269)
T PRK11831         29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI   64 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            344455699999999999999999999987666654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.12  E-value=3.1e-06  Score=59.22  Aligned_cols=36  Identities=14%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.++..+.+.||+|+|||||++++++.+.+..+.+.
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   60 (237)
T cd03252          25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL   60 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            444556999999999999999999999877666653

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=98.12  E-value=3.5e-06  Score=66.86  Aligned_cols=61  Identities=21%  Similarity=0.498  Sum_probs=43.0

Q ss_pred             cccCCccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632           2 EVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus         2 e~~~~~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +++..+.+..|+.-++.  +.|.++.++.+ ...+.               ..++++++||||||||+++++++..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~--vigq~~a~~~L-~~~~~---------------~~~~~l~~G~~G~GKttla~~l~~~l~~   76 (637)
T PRK13765         16 DFETTSDIEVPERLIDQ--VIGQEHAVEVI-KKAAK---------------QRRHVMMIGSPGTGKSMLAKAMAELLPK   76 (637)
T ss_pred             CcccceecccCcccHHH--cCChHHHHHHH-HHHHH---------------hCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence            34455556556655554  78888877765 33222               1236999999999999999999998754

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.12  E-value=3.4e-06  Score=62.10  Aligned_cols=40  Identities=18%  Similarity=0.245  Sum_probs=31.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .+..+..+.|+|++|||||||+++|++.+....+.+...+
T Consensus        37 ~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g   76 (327)
T PRK11308         37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG   76 (327)
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence            3444556999999999999999999999877767654333

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.12  E-value=2.3e-06  Score=58.84  Aligned_cols=37  Identities=19%  Similarity=0.347  Sum_probs=30.5

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.+...+.+.||+|+||||+++++++.+.+..+.+
T Consensus        19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i   55 (211)
T cd03298          19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV   55 (211)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4455566799999999999999999999987766654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.12  E-value=3.3e-06  Score=59.00  Aligned_cols=37  Identities=22%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+||||++++|++...+..+.+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~   59 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL   59 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence            3445566899999999999999999999877767653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.12  E-value=2.2e-06  Score=61.02  Aligned_cols=36  Identities=14%  Similarity=0.227  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+..+..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i   69 (257)
T PRK11247         34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL   69 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            344455699999999999999999999987766665

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.12  E-value=2.4e-06  Score=59.96  Aligned_cols=36  Identities=19%  Similarity=0.439  Sum_probs=29.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   58 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL   58 (240)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344566688999999999999999999987766655

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.12  E-value=2.5e-06  Score=59.73  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~   61 (238)
T cd03249          24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL   61 (238)
T ss_pred             EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEE
Confidence            34455566999999999999999999999877777653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.12  E-value=2.1e-06  Score=63.86  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      .+.....+.|.||+||||||++++||+...+..+.+..
T Consensus        26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i   63 (353)
T TIGR03265        26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ   63 (353)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE
Confidence            34445568999999999999999999998887776643

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.12  E-value=3.8e-06  Score=60.05  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.++..+.|.||+|+|||||+++|++...+..+.+
T Consensus        33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i   69 (268)
T PRK10419         33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV   69 (268)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            3445566699999999999999999999887766665

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.12  E-value=7.3e-06  Score=60.36  Aligned_cols=47  Identities=30%  Similarity=0.483  Sum_probs=36.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.++.++.+ ...+...            ..+..++|+||||+|||++++++++.+.
T Consensus        15 ~iig~~~~~~~l-~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~   61 (355)
T TIGR02397        15 DVIGQEHIVQTL-KNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALN   61 (355)
T ss_pred             hccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            588999988877 4443211            2345689999999999999999999875

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK06620 hypothetical protein; Validated

Probab=98.12  E-value=6.8e-06  Score=57.11  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=23.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.++|+||+|||||+++++++...+.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~   70 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA   70 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC
Confidence            56999999999999999999987653

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.12  E-value=3.5e-06  Score=58.34  Aligned_cols=37  Identities=14%  Similarity=0.244  Sum_probs=30.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.+.||+|+||||+++++++...+..+.+.
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   62 (221)
T cd03244          26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL   62 (221)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence            3445556889999999999999999999877766653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.11  E-value=3.5e-06  Score=58.63  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus         3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   37 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV   37 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            34566799999999999999999999887666654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.11  E-value=5.2e-06  Score=64.53  Aligned_cols=30  Identities=30%  Similarity=0.457  Sum_probs=25.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .+-++|+||+||||||.++++|++++....
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            345678999999999999999999987543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.11  E-value=2.3e-06  Score=55.86  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+.+.||+|+||||+++++++.+.+..+.+.
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~   58 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT   58 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEE
Confidence            4455666899999999999999999999887767653

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.11  E-value=2.6e-06  Score=59.44  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=29.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC----CCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA----REPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~----~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+    ..+.+
T Consensus         8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i   47 (230)
T TIGR02770         8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI   47 (230)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE
Confidence            4455667999999999999999999999876    45654

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.11  E-value=2.4e-06  Score=60.39  Aligned_cols=38  Identities=13%  Similarity=0.157  Sum_probs=30.8

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.+..+..++|.||+|+|||||++++++...+..+.+.
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~   61 (253)
T TIGR02323        24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT   61 (253)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            34455666999999999999999999999877766653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.11  E-value=2.4e-06  Score=58.98  Aligned_cols=37  Identities=22%  Similarity=0.414  Sum_probs=31.1

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   55 (213)
T TIGR01277        19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI   55 (213)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            4556677799999999999999999999987766654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=6.2e-06  Score=65.26  Aligned_cols=48  Identities=25%  Similarity=0.415  Sum_probs=36.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ +..+...            +.+..++|+||+|+||||+++++|+.+..
T Consensus        17 dviGQe~vv~~L-~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         17 EMVGQEHVVQAL-TNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            588988887776 4433221            22445899999999999999999998853

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=98.11  E-value=4.2e-06  Score=56.54  Aligned_cols=34  Identities=32%  Similarity=0.612  Sum_probs=26.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      |+++||||+||||+++.||..++...   ++..+++.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~---i~~~~l~~   35 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPH---ISTGDLLR   35 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeE---EECcHHHH
Confidence            78999999999999999999987553   44444443

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.11  E-value=2.7e-06  Score=58.04  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=29.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.||+|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (198)
T TIGR01189        22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEV   57 (198)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence            345556699999999999999999999987666655

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.11  E-value=2.8e-06  Score=58.21  Aligned_cols=41  Identities=15%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +.++..+.+.||+|+||||+++++++...+..+.+
T Consensus        20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i   62 (204)
T cd03250          20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV   62 (204)
T ss_pred             eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence            344443  45556699999999999999999999987776654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.11  E-value=2.5e-06  Score=58.95  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=30.2

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+..+..+.+.||+|+||||+++++++.+.+..+.+
T Consensus        32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   68 (214)
T PRK13543         32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI   68 (214)
T ss_pred             EEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE
Confidence            3445556699999999999999999999987766655

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.11  E-value=6.2e-06  Score=66.53  Aligned_cols=34  Identities=29%  Similarity=0.552  Sum_probs=27.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .++|+||+|+|||++|+++|..++.++.. ++.++
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~-~d~se  519 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLER-FDMSE  519 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEE-EeCch
Confidence            48899999999999999999999766443 44443

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.10  E-value=5.9e-06  Score=65.64  Aligned_cols=48  Identities=29%  Similarity=0.410  Sum_probs=36.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ ...+...            +.+..++|+||+|+||||+|+++|+.+..
T Consensus        17 divGQe~vv~~L-~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994         17 EVVGQEHVLTAL-ANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            599999988876 4333211            22345899999999999999999998865

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.10  E-value=1.1e-05  Score=56.80  Aligned_cols=25  Identities=20%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..++|+||+|||||++++++++...
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~   70 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELS   70 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4699999999999999999998765

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.10  E-value=2.7e-06  Score=59.93  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=29.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (250)
T PRK11264         25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI   60 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            344455688999999999999999999887666654

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.10  E-value=2.4e-06  Score=56.45  Aligned_cols=25  Identities=32%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++++||+||||||+++.+++.++..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~   25 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAK   25 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCe
Confidence            5789999999999999999998743

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.10  E-value=3.5e-06  Score=62.86  Aligned_cols=40  Identities=15%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .+.....+.|.||+||||||++++|++...+..+.+...+
T Consensus        15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G   54 (363)
T TIGR01186        15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG   54 (363)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECC
Confidence            3444556899999999999999999999988877764333

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.10  E-value=3.6e-06  Score=58.01  Aligned_cols=41  Identities=22%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+++++  +.+...+.+.||+||||||+...+|+...+..+.+
T Consensus        20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i   62 (259)
T COG4525          20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI   62 (259)
T ss_pred             hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence            444444  44455689999999999999999999988776765

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.10  E-value=2.6e-06  Score=60.22  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++...+..+.+
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   62 (255)
T PRK11300         27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI   62 (255)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE
Confidence            344566689999999999999999999987766654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.10  E-value=2.7e-06  Score=60.49  Aligned_cols=36  Identities=19%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i   59 (258)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV   59 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            344455688999999999999999999987766665

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.10  E-value=2.3e-06  Score=61.16  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   58 (271)
T PRK13638         16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV   58 (271)
T ss_pred             cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEE
Confidence            344433  34455689999999999999999999987776765

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=98.10  E-value=8.2e-06  Score=64.02  Aligned_cols=57  Identities=19%  Similarity=0.364  Sum_probs=38.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      |+-||++.+.+++ +.+.      .....++ ...+-++|+||||+|||+|+++|+..+.....+
T Consensus        77 d~yGlee~ieriv-~~l~------~Aa~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y  133 (644)
T PRK15455         77 EFYGMEEAIEQIV-SYFR------HAAQGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIY  133 (644)
T ss_pred             cccCcHHHHHHHH-HHHH------HHHHhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcce
Confidence            5889999999883 2221      1112222 123457789999999999999999988654333

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.10  E-value=2.9e-06  Score=60.58  Aligned_cols=36  Identities=17%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i   70 (267)
T PRK15112         35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL   70 (267)
T ss_pred             EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            444556699999999999999999999988776765

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.10  E-value=3.3e-06  Score=54.43  Aligned_cols=27  Identities=30%  Similarity=0.509  Sum_probs=24.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      |++.|+|||||||+++.+|..++.+++
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~   28 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYL   28 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            678999999999999999999987753

>PRK14526 adenylate kinase; Provisional

Probab=98.10  E-value=4.8e-06  Score=57.82  Aligned_cols=33  Identities=27%  Similarity=0.624  Sum_probs=26.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      ++|+|||||||||+++.+|..++...   ++.++++
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~~---is~G~ll   35 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYYH---ISTGDLF   35 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCce---eecChHH
Confidence            78999999999999999999887553   3444444

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.10  E-value=3.3e-06  Score=65.52  Aligned_cols=43  Identities=16%  Similarity=0.374  Sum_probs=34.4

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      +++++.+  +++..+.++||+||||||+++.+++.+.+..+.+..
T Consensus       350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i  394 (529)
T TIGR02868       350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTL  394 (529)
T ss_pred             eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence            4555544  455569999999999999999999999888777643

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.10  E-value=1e-05  Score=57.15  Aligned_cols=55  Identities=20%  Similarity=0.327  Sum_probs=41.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      +|.|+|.+++.+.+... .+         +.=.+..++||+|..|||||+++||+-+++......
T Consensus        61 ~l~Gvd~qk~~L~~NT~-~F---------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr  115 (287)
T COG2607          61 DLVGVDRQKEALVRNTE-QF---------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR  115 (287)
T ss_pred             HHhCchHHHHHHHHHHH-HH---------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence            68999999988844332 11         111356789999999999999999999988665444

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.10  E-value=2.9e-06  Score=58.41  Aligned_cols=36  Identities=31%  Similarity=0.466  Sum_probs=29.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+..+..+.|.||+|+||||+++++++...+..+.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   59 (207)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI   59 (207)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            344555689999999999999999999987766665

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.09  E-value=6.1e-06  Score=66.44  Aligned_cols=48  Identities=25%  Similarity=0.405  Sum_probs=36.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.++.++.+ +..+...            +.+..+||+||+|+||||+++++|+.+..
T Consensus        17 EVIGQe~Vv~~L-~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003         17 SLVGQEHVVRAL-THALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             HHcCcHHHHHHH-HHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            599999988877 4433211            22445899999999999999999998854

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.09  E-value=2.4e-06  Score=64.05  Aligned_cols=37  Identities=27%  Similarity=0.387  Sum_probs=30.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.....+.|.||+|||||||+++||+...+..+.+.
T Consensus        36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~   72 (375)
T PRK09452         36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM   72 (375)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            3444556899999999999999999999887767654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.09  E-value=2.9e-06  Score=60.24  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   63 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV   63 (258)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            445566699999999999999999999987776765

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.09  E-value=3.8e-06  Score=59.00  Aligned_cols=36  Identities=31%  Similarity=0.540  Sum_probs=28.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      ..+++.||||+||||+++.+|..++...   ++.++++.
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g~~~---is~gdllr   42 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKENLKH---INMGNILR   42 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcE---EECChHHH
Confidence            4599999999999999999999998664   44455543

>PRK14527 adenylate kinase; Provisional

Probab=98.09  E-value=5.1e-06  Score=56.46  Aligned_cols=30  Identities=33%  Similarity=0.634  Sum_probs=25.6

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .+.-++++||||+||||+++.+|..++...
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~   34 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKK   34 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence            345689999999999999999999887654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.09  E-value=3.1e-06  Score=58.51  Aligned_cols=36  Identities=11%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.+.||+|+||||+++++++...+..+.+
T Consensus        26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   61 (220)
T cd03245          26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV   61 (220)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE
Confidence            344555688999999999999999999987666655

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=98.09  E-value=4.4e-06  Score=61.40  Aligned_cols=37  Identities=38%  Similarity=0.537  Sum_probs=31.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+-..+.++|.||||+|||++++.+|..++.++..+.
T Consensus        39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~   75 (329)
T COG0714          39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQ   75 (329)
T ss_pred             HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence            3445677999999999999999999999999877753

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.09  E-value=6.8e-06  Score=64.89  Aligned_cols=48  Identities=27%  Similarity=0.419  Sum_probs=37.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+.+++.+ ...+...            +.+..++|+||+|+|||++|+++|+.+..
T Consensus        25 dliGq~~~v~~L-~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c   72 (598)
T PRK09111         25 DLIGQEAMVRTL-TNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNY   72 (598)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence            589999988877 4433211            23557999999999999999999998754

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.09  E-value=3e-06  Score=57.81  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~~   86 (121)
                      .+.+...++|.||+|+|||||++++++.+  .+..+.+.
T Consensus        31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~   69 (194)
T cd03213          31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL   69 (194)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence            34556679999999999999999999998  76666653

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.08  E-value=3e-06  Score=60.61  Aligned_cols=44  Identities=18%  Similarity=0.345  Sum_probs=33.3

Q ss_pred             ChHHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          42 PPEVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        42 ~~~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...+++++.+  .++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i   81 (269)
T cd03294          36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV   81 (269)
T ss_pred             CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            3345555544  4455689999999999999999999987766654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.08  E-value=3e-06  Score=58.98  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=29.5

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLN---AREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~   85 (121)
                      +.+.+...+.|+||+|+||||+++++++.+.   +..+.+
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i   67 (226)
T cd03234          28 LHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI   67 (226)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE
Confidence            3445566799999999999999999999987   555544

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.08  E-value=5.8e-06  Score=57.62  Aligned_cols=61  Identities=20%  Similarity=0.236  Sum_probs=47.1

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh-hchhHHHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY-VGESEANVRRLFADAE  111 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~f~~a~  111 (121)
                      +.....+.+.|.+|+||||++.++|+.+.++.+.+.....-+.++ .......+..+||+..
T Consensus        29 I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~   90 (263)
T COG1101          29 IAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL   90 (263)
T ss_pred             ecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence            344556889999999999999999999999988885444444444 4455677999999764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.08  E-value=3.1e-06  Score=58.42  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.+ ..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        19 l~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   54 (214)
T cd03297          19 FDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTI   54 (214)
T ss_pred             EEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            44566 7799999999999999999999987666654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02200 adenylate kinase family protein

Probab=98.08  E-value=7e-06  Score=57.82  Aligned_cols=39  Identities=18%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      ..+..+++.|||||||||+|+.+|..++...   ++.++++.
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h---is~gdllR   79 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKH---LSAGDLLR   79 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCeE---EEccHHHH
Confidence            3345688999999999999999999987642   45555553

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.08  E-value=3.2e-06  Score=59.30  Aligned_cols=36  Identities=25%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i   59 (242)
T TIGR03411        24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV   59 (242)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            344555688999999999999999999987766655

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.08  E-value=3e-06  Score=60.43  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=29.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   68 (265)
T PRK10575         33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI   68 (265)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence            344555688999999999999999999987666654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.08  E-value=2.8e-06  Score=60.79  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (272)
T PRK15056         29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI   64 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344555689999999999999999999987666654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.08  E-value=4.4e-06  Score=61.61  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      +.....+.|.|++||||||++++|++.+....+.+..
T Consensus        44 i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~   80 (331)
T PRK15079         44 LYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW   80 (331)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE
Confidence            3445558999999999999999999998877776643

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.07  E-value=2.9e-06  Score=63.38  Aligned_cols=36  Identities=19%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.....+.|.||+|||||||+++|++.+.+..+.+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I   60 (369)
T PRK11000         25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL   60 (369)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            344455689999999999999999999987766665

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.07  E-value=3.6e-06  Score=58.25  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   58 (218)
T cd03290          16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV   58 (218)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence            344433  44555689999999999999999999987665654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR00235 udk uridine kinase

Probab=98.07  E-value=7.4e-06  Score=56.39  Aligned_cols=25  Identities=40%  Similarity=0.445  Sum_probs=22.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      -+.+.||+||||||+++++++.+..
T Consensus         8 vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         8 IIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4778999999999999999998864

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.07  E-value=7.5e-06  Score=64.03  Aligned_cols=53  Identities=21%  Similarity=0.383  Sum_probs=38.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      ..++|+|.+||||||+.+.+|..++.++   ++....+....|.+   +.++|++--+.
T Consensus         7 ~~i~LiG~~GaGKttvg~~LA~~L~~~f---iD~D~~ie~~~g~s---i~eif~~~Ge~   59 (542)
T PRK14021          7 PQAVIIGMMGAGKTRVGKEVAQMMRLPF---ADADVEIEREIGMS---IPSYFEEYGEP   59 (542)
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCCE---EEchHHHHHHHCcC---HHHHHHHHHHH
Confidence            3589999999999999999999999886   44455555555544   66666554333

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.07  E-value=1.4e-06  Score=59.76  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.|++|+||||+++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (201)
T cd03231          22 TLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV   57 (201)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            344555699999999999999999999987776665

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.07  E-value=7.8e-06  Score=65.59  Aligned_cols=48  Identities=31%  Similarity=0.468  Sum_probs=37.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+.+++.+ +..+...            ..+..+||+||+|+|||++|+++|+.+..
T Consensus        19 dIiGQe~~v~~L-~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC   66 (725)
T PRK07133         19 DIVGQDHIVQTL-KNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNC   66 (725)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            689999988876 4444321            23456899999999999999999998754

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.07  E-value=4.2e-06  Score=59.79  Aligned_cols=36  Identities=17%  Similarity=0.240  Sum_probs=29.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i   66 (269)
T PRK13648         31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI   66 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            344555688999999999999999999987766655

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.06  E-value=3.9e-06  Score=52.74  Aligned_cols=22  Identities=41%  Similarity=0.724  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy3632          57 ILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |+|.|+||+||||+++.|+..+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999996

...

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.06  E-value=3e-06  Score=59.30  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   62 (237)
T PRK11614         27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI   62 (237)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence            445566699999999999999999999987666654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.06  E-value=3.2e-06  Score=58.93  Aligned_cols=50  Identities=16%  Similarity=0.167  Sum_probs=36.5

Q ss_pred             hhccCCChHHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          36 FASRVFPPEVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        36 i~~~~~~~~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +........+++++.+  .+...+.|.||+|+||||+++++++...+..+.+
T Consensus        28 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   79 (224)
T cd03220          28 RKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV   79 (224)
T ss_pred             hhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            3334444456666544  4455689999999999999999999887766665

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.06  E-value=9e-06  Score=62.31  Aligned_cols=48  Identities=31%  Similarity=0.426  Sum_probs=36.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ +..+...            ..+..++|+||+|+|||++|+++|+.+..
T Consensus        18 diiGq~~~v~~L-~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c   65 (451)
T PRK06305         18 EILGQDAVVAVL-KNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNC   65 (451)
T ss_pred             HhcCcHHHHHHH-HHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            699999988876 4443211            23456999999999999999999998743

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.06  E-value=3.2e-06  Score=61.03  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=29.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   68 (289)
T PRK13645         33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT   68 (289)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            344455699999999999999999999987766665

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.06  E-value=9.2e-06  Score=63.77  Aligned_cols=47  Identities=26%  Similarity=0.411  Sum_probs=36.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++.+ +..+...            +.+..+||+||+|||||++|+.+|+.+.
T Consensus        17 ~viGq~~v~~~L-~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~   63 (559)
T PRK05563         17 DVVGQEHITKTL-KNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVN   63 (559)
T ss_pred             hccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            699999988876 4443221            2345689999999999999999999875

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.06  E-value=3.3e-06  Score=62.78  Aligned_cols=37  Identities=27%  Similarity=0.387  Sum_probs=30.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.....+.|.||+|||||||+++|++.+.+..+.+.
T Consensus        24 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   60 (353)
T PRK10851         24 DIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR   60 (353)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3445556899999999999999999999887777653

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.06  E-value=3.5e-06  Score=58.50  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=30.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~   66 (224)
T TIGR02324        30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL   66 (224)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            3445556999999999999999999999877666653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.06  E-value=5.2e-06  Score=65.06  Aligned_cols=46  Identities=20%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .+++++.+  +++..++++|++|+||||+++++++.+.+..+.+..++
T Consensus       357 ~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g  404 (582)
T PRK11176        357 PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG  404 (582)
T ss_pred             ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence            35555544  44556999999999999999999999988877764333

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.06  E-value=3.7e-06  Score=60.19  Aligned_cols=36  Identities=17%  Similarity=0.361  Sum_probs=29.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I   66 (271)
T PRK13632         31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI   66 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            344555688999999999999999999987766654

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.06  E-value=3.3e-06  Score=55.01  Aligned_cols=25  Identities=28%  Similarity=0.594  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++++|+||+||||+++.++..++..
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~   26 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAP   26 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCE
Confidence            6789999999999999999987653

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.05  E-value=3.1e-06  Score=63.44  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.....+.|.||+||||||++++||+...+..+.+.
T Consensus        41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   77 (377)
T PRK11607         41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM   77 (377)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            3445556889999999999999999999877766653

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.05  E-value=8.3e-06  Score=64.33  Aligned_cols=47  Identities=30%  Similarity=0.477  Sum_probs=36.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.++.++.+ +..+...            ..+..++|+||+|+|||++++++|+.+.
T Consensus        17 eiiGq~~~~~~L-~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         17 ELVGQEHVVQTL-RNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             HhcCCHHHHHHH-HHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999988876 4433211            1234589999999999999999999875

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.05  E-value=3.7e-06  Score=59.63  Aligned_cols=37  Identities=27%  Similarity=0.341  Sum_probs=30.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~   63 (257)
T PRK10619         27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIV   63 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            4445566899999999999999999999877767653

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.05  E-value=3.2e-06  Score=60.70  Aligned_cols=36  Identities=11%  Similarity=0.205  Sum_probs=29.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i   64 (280)
T PRK13649         29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV   64 (280)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344455688999999999999999999987766665

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.05  E-value=5e-06  Score=61.26  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=29.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC---CCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR---EPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~---~~~~~   86 (121)
                      .+..+..+.|.|++||||||++++|++.+...   .+.+.
T Consensus        38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~   77 (330)
T PRK09473         38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT   77 (330)
T ss_pred             EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE
Confidence            34445569999999999999999999998764   45553

>KOG1969|consensus

Probab=98.05  E-value=9.1e-06  Score=64.83  Aligned_cols=37  Identities=35%  Similarity=0.499  Sum_probs=30.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      +-+||+||||-||||||+.+|++.|...+. ++.++-.
T Consensus       327 KilLL~GppGlGKTTLAHViAkqaGYsVvE-INASDeR  363 (877)
T KOG1969|consen  327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVE-INASDER  363 (877)
T ss_pred             ceEEeecCCCCChhHHHHHHHHhcCceEEE-ecccccc
Confidence            347789999999999999999999988666 5555543

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=98.05  E-value=1.2e-05  Score=59.50  Aligned_cols=47  Identities=26%  Similarity=0.463  Sum_probs=36.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .|.|.++.+..++...+.              +...++++.|+||+||||+++++++.+..
T Consensus         5 ~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~   51 (337)
T TIGR02030         5 AIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPE   51 (337)
T ss_pred             ccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcc
Confidence            589999988877332221              12457999999999999999999998854

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.05  E-value=4.4e-06  Score=67.08  Aligned_cols=47  Identities=21%  Similarity=0.432  Sum_probs=37.1

Q ss_pred             hHHHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          43 PEVVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        43 ~~~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      +...+++.++.+.|  +.++|++||||||++|.+.+.+.+..+.+..++
T Consensus       486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg  534 (709)
T COG2274         486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG  534 (709)
T ss_pred             cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence            45666655555444  999999999999999999999998888774444

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.05  E-value=5.6e-06  Score=58.61  Aligned_cols=33  Identities=30%  Similarity=0.483  Sum_probs=28.1

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ....+.|.||+|+||||++++|++.+.+..+.+
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i   56 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI   56 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence            445588999999999999999999987776665

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.05  E-value=3.8e-06  Score=58.27  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.||+|+|||||++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (223)
T TIGR03740        22 TVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI   57 (223)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344556689999999999999999999987666654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.05  E-value=1e-05  Score=54.85  Aligned_cols=32  Identities=28%  Similarity=0.445  Sum_probs=26.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +.....+++.||+|+||||+++++++.+....
T Consensus        22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~   53 (186)
T cd01130          22 VEARKNILISGGTGSGKTTLLNALLAFIPPDE   53 (186)
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC
Confidence            34566799999999999999999999886543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.05  E-value=5.7e-06  Score=47.41  Aligned_cols=22  Identities=32%  Similarity=0.658  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy3632          57 ILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +.+.|+||+||||++++++..+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999996

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.05  E-value=1.2e-06  Score=63.74  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i   59 (301)
T TIGR03522        24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV   59 (301)
T ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            344455688999999999999999999987777765

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.05  E-value=9.8e-06  Score=63.81  Aligned_cols=48  Identities=27%  Similarity=0.468  Sum_probs=37.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+++++.+ ...+..           + +.+..+||+||+|+|||++++++|+.+..
T Consensus        17 ~iiGq~~v~~~L-~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c   64 (576)
T PRK14965         17 DLTGQEHVSRTL-QNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNC   64 (576)
T ss_pred             HccCcHHHHHHH-HHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence            699999888777 444321           1 23456899999999999999999999753

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.05  E-value=1.1e-06  Score=64.13  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=29.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....+.|.||+|+||||++++|++.+.+..+.+
T Consensus        30 i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v   64 (306)
T PRK13537         30 VQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI   64 (306)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            34445588999999999999999999988776655

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.04  E-value=3.8e-06  Score=59.52  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   58 (256)
T TIGR03873        23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTV   58 (256)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence            345566689999999999999999999987766654

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK06526 transposase; Provisional

Probab=98.04  E-value=4e-06  Score=59.72  Aligned_cols=28  Identities=36%  Similarity=0.609  Sum_probs=24.1

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.+++|+||||||||+++.+++..+..
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~  124 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQ  124 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence            3567999999999999999999987643

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.04  E-value=3.5e-06  Score=62.57  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=30.2

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.....+.|.||+|||||||+++|++.+.+..+.+
T Consensus        19 l~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I   55 (352)
T PRK11144         19 LTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRI   55 (352)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            3344556689999999999999999999987766665

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.04  E-value=4e-06  Score=60.31  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+..+..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~   65 (279)
T PRK13635         29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT   65 (279)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence            3444556899999999999999999999887777663

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.04  E-value=4.1e-06  Score=59.74  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~   65 (265)
T PRK10253         29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVW   65 (265)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEE
Confidence            3445556999999999999999999999877666653

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.04  E-value=5.7e-06  Score=62.51  Aligned_cols=36  Identities=17%  Similarity=0.433  Sum_probs=29.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +..+..+.|.||+|||||||+++|++.+.+..+.+.
T Consensus        51 i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~   86 (400)
T PRK10070         51 IEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL   86 (400)
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEE
Confidence            344455889999999999999999999887777653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.04  E-value=5e-06  Score=57.08  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.....+.+.||+|+|||||++++++...+..+.+.
T Consensus        30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   66 (207)
T cd03369          30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE   66 (207)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEE
Confidence            3444556899999999999999999999877767653

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK06762 hypothetical protein; Provisional

Probab=98.04  E-value=5.8e-06  Score=54.79  Aligned_cols=26  Identities=35%  Similarity=0.572  Sum_probs=23.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .-++++|+|||||||+|+.++..++.
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l~~   28 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERLGR   28 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35789999999999999999999854

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.04  E-value=1.8e-05  Score=59.13  Aligned_cols=50  Identities=26%  Similarity=0.476  Sum_probs=35.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.|=+++++++ ...+...         +.-..+.+++++||||+|||++++.+++.+.
T Consensus        31 ~l~~Re~e~~~l-~~~l~~~---------~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~   80 (394)
T PRK00411         31 NLPHREEQIEEL-AFALRPA---------LRGSRPLNVLIYGPPGTGKTTTVKKVFEELE   80 (394)
T ss_pred             CCCCHHHHHHHH-HHHHHHH---------hCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            477888888887 3333211         1112345699999999999999999998874

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.03  E-value=4.5e-06  Score=58.83  Aligned_cols=32  Identities=25%  Similarity=0.408  Sum_probs=26.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+.
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~   54 (247)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV   54 (247)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            34455568899999999999999999998764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.03  E-value=3.5e-06  Score=59.75  Aligned_cols=37  Identities=30%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.++..+.|.||+|+||||++++|++.+.+..+.+
T Consensus        25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i   61 (251)
T PRK09544         25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI   61 (251)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            3445566699999999999999999999987665554

>PRK02496 adk adenylate kinase; Provisional

Probab=98.03  E-value=4.8e-06  Score=56.15  Aligned_cols=26  Identities=31%  Similarity=0.617  Sum_probs=23.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+++.|||||||||+++.+|..++..
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~   28 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIP   28 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            38899999999999999999998765

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.03  E-value=4.7e-06  Score=58.41  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=27.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++..  .+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i   59 (243)
T TIGR01978        22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI   59 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE
Confidence            34445569999999999999999999984  3444544

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.02  E-value=1.1e-05  Score=63.34  Aligned_cols=48  Identities=27%  Similarity=0.467  Sum_probs=37.4

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ +..+...            ..+..++|+||+|+|||++|+++|+.+..
T Consensus        17 diiGqe~iv~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c   64 (563)
T PRK06647         17 SLEGQDFVVETL-KHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNC   64 (563)
T ss_pred             HccCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence            699999988877 4444221            23456999999999999999999998753

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.02  E-value=1e-06  Score=65.23  Aligned_cols=42  Identities=36%  Similarity=0.426  Sum_probs=32.3

Q ss_pred             HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+++++.+  .++..+.|.||+|+||||++++|++.+.+..+.+
T Consensus        55 ~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i   98 (340)
T PRK13536         55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI   98 (340)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE
Confidence            34555444  3445588999999999999999999988776665

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.02  E-value=5.1e-06  Score=58.08  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i   57 (232)
T cd03300          22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI   57 (232)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            345566799999999999999999999987766654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.02  E-value=4.7e-06  Score=56.44  Aligned_cols=26  Identities=31%  Similarity=0.472  Sum_probs=23.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .++|+||+||||||+++.++..++..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~~~~   29 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQREQTQ   29 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCe
Confidence            58899999999999999999987654

>TIGR01351 adk adenylate kinases

Probab=98.02  E-value=5.5e-06  Score=57.16  Aligned_cols=26  Identities=35%  Similarity=0.705  Sum_probs=23.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      |+++||||+||||+++.+|..++...
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~   27 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPH   27 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCe
Confidence            78999999999999999999887653

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.02  E-value=4.5e-06  Score=59.92  Aligned_cols=32  Identities=19%  Similarity=0.275  Sum_probs=26.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+.
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~   54 (272)
T PRK13547         23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGG   54 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence            34555668999999999999999999988654

>KOG1942|consensus

Probab=98.02  E-value=1.3e-05  Score=58.43  Aligned_cols=57  Identities=37%  Similarity=0.507  Sum_probs=41.0

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee-ecCcccchhhhchhHHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEANVRRLFADA  110 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~f~~a  110 (121)
                      ..+.+||.||||||||.+|-+++.+++...... ..+++..+.-+..++-. .+-|..|
T Consensus        63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRa  120 (456)
T KOG1942|consen   63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRA  120 (456)
T ss_pred             cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHH
Confidence            467899999999999999999999998753221 34666666666666543 3445544

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.01  E-value=4.5e-06  Score=62.02  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.....+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        18 l~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I   54 (354)
T TIGR02142        18 FTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI   54 (354)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            3344555689999999999999999999987766665

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14528 adenylate kinase; Provisional

Probab=98.01  E-value=6.5e-06  Score=55.93  Aligned_cols=27  Identities=33%  Similarity=0.658  Sum_probs=24.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .++++||||+||||+++.++..++.+.
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~   29 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQ   29 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            489999999999999999999987653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.01  E-value=4.6e-06  Score=59.67  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=31.8

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++.+.  +.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I   81 (264)
T PRK13546         39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV   81 (264)
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            444444  44555689999999999999999999987766654

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.01  E-value=4.3e-06  Score=59.43  Aligned_cols=42  Identities=26%  Similarity=0.399  Sum_probs=32.1

Q ss_pred             HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.+.  .+.-+.+.||+|+|||||+|++.+.+.+..+.+.
T Consensus        19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~   62 (254)
T COG1121          19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK   62 (254)
T ss_pred             eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence            44444443  4445889999999999999999998887767653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.01  E-value=9.1e-07  Score=64.19  Aligned_cols=42  Identities=24%  Similarity=0.453  Sum_probs=33.0

Q ss_pred             HHHHHhCCCCCcc--EEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          44 EVVEQLGCQHVKG--ILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        44 ~~~~~~~~~~~~~--vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+++++.+....|  +.|.||+|+||||+.+++++...+..+.+
T Consensus        19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i   62 (293)
T COG1131          19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI   62 (293)
T ss_pred             EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            3444555444444  88999999999999999999998887776

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.01  E-value=1e-05  Score=52.33  Aligned_cols=30  Identities=30%  Similarity=0.348  Sum_probs=25.7

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+..-++|.|+.|+||||+++.+++.++..
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            344568899999999999999999998764

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.01  E-value=1.2e-05  Score=63.84  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++.|.++.++++ +..+....        ++..+.+.++|+|||||||||+++++|+.++..
T Consensus        85 el~~~~~ki~~l-~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~  137 (637)
T TIGR00602        85 ELAVHKKKIEEV-ETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQ  137 (637)
T ss_pred             HhcCcHHHHHHH-HHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence            577888877776 44332211        122334458899999999999999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.01  E-value=1.2e-05  Score=58.21  Aligned_cols=47  Identities=28%  Similarity=0.458  Sum_probs=34.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+.+++.+ +..+..             ....+++|+||+|+|||++++++++.+..
T Consensus        18 ~~~g~~~~~~~l-~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~   64 (319)
T PRK00440         18 EIVGQEEIVERL-KSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYG   64 (319)
T ss_pred             HhcCcHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence            578888877776 433321             11225899999999999999999998743

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.1e-05  Score=62.46  Aligned_cols=61  Identities=10%  Similarity=0.194  Sum_probs=45.6

Q ss_pred             HhhccCCChHHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632          35 AFASRVFPPEVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY   95 (121)
Q Consensus        35 ~i~~~~~~~~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~   95 (121)
                      .+.++-..+..++++++..  +..|.+.|++||||||++..+++.+.+..+++...+.-+..+
T Consensus       343 sF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l  405 (573)
T COG4987         343 SFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL  405 (573)
T ss_pred             eeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence            3445555566777766554  556999999999999999999999999888875554444443

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.00  E-value=6.3e-06  Score=55.75  Aligned_cols=29  Identities=41%  Similarity=0.707  Sum_probs=23.5

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ....+++|+||+|+|||.+|.+++.++-.
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~   73 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAIR   73 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence            34568999999999999999999987643

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.00  E-value=1.1e-05  Score=55.48  Aligned_cols=27  Identities=33%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.-|.+.|++||||||++++|++.++.
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~   32 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEELGD   32 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            445889999999999999999999843

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.00  E-value=1.5e-05  Score=58.31  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=28.6

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      +.+...|+|+|++|||||++++.+|..++.+++
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i  162 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFV  162 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            345667999999999999999999999988754

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.00  E-value=5e-06  Score=59.65  Aligned_cols=37  Identities=19%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.++..+.|.||+|+||||+++++++.+....+.+
T Consensus        23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   59 (275)
T PRK13639         23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV   59 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence            3445566699999999999999999999987766665

>PHA00729 NTP-binding motif containing protein

Probab=98.00  E-value=5.8e-06  Score=57.87  Aligned_cols=24  Identities=25%  Similarity=0.508  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +++++|+||+|||++|.+++..+.
T Consensus        19 nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         19 SAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            699999999999999999999875

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.00  E-value=1.5e-05  Score=61.71  Aligned_cols=47  Identities=28%  Similarity=0.460  Sum_probs=36.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++.+ +..+...            ..+..++|+||+|+|||++|+.+|..+.
T Consensus        17 diiGq~~i~~~L-~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~   63 (486)
T PRK14953         17 EVIGQEIVVRIL-KNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLN   63 (486)
T ss_pred             HccChHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            588999988876 4444221            2234588999999999999999999875

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.00  E-value=4.9e-06  Score=62.10  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC--Ceee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNARE--PKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~--~~~~   86 (121)
                      +.....+.|.||+||||||++++||+...+..  +.+.
T Consensus        28 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~   65 (362)
T TIGR03258        28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA   65 (362)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEE
Confidence            34455688999999999999999999988777  6653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.00  E-value=5.3e-06  Score=59.85  Aligned_cols=42  Identities=17%  Similarity=0.372  Sum_probs=32.5

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  +.+...+.|.||+|+||||++++|++.+.+..+.+.
T Consensus        22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~   65 (286)
T PRK13646         22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT   65 (286)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            344443  344556899999999999999999999887777653

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.00  E-value=5.6e-06  Score=58.66  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.++..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (255)
T PRK11231         25 LPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV   59 (255)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence            44455689999999999999999999887766654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.00  E-value=6.2e-06  Score=65.92  Aligned_cols=46  Identities=13%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             HHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          44 EVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        44 ~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .+++++.  ++++..+.++|++||||||+++.+++.+.+..+.+..++
T Consensus       467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg  514 (686)
T TIGR03797       467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG  514 (686)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence            3555544  455666999999999999999999999988878764333

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PLN02674 adenylate kinase

Probab=98.00  E-value=1.5e-05  Score=56.54  Aligned_cols=38  Identities=26%  Similarity=0.391  Sum_probs=30.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      ...++|.||||+||+|+++.||..++...   ++.++++..
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h---is~GdllR~   68 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH---LATGDMLRA   68 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcE---EchhHHHHH
Confidence            45699999999999999999999998653   445555543

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.99  E-value=5.3e-06  Score=59.90  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i   64 (287)
T PRK13637         29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI   64 (287)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Confidence            344455699999999999999999999987776765

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.99  E-value=6e-06  Score=51.25  Aligned_cols=23  Identities=43%  Similarity=0.928  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |.|+||||+|||++++.++..+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999887764

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.99  E-value=5.5e-06  Score=59.44  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   59 (274)
T PRK13644         24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV   59 (274)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            344555699999999999999999999987766665

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.99  E-value=5.4e-06  Score=59.55  Aligned_cols=36  Identities=22%  Similarity=0.464  Sum_probs=29.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.++..+.|.||+|+||||++++|++.+.+..+.+.
T Consensus        27 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~   62 (277)
T PRK13652         27 APRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL   62 (277)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            444556889999999999999999999887777653

>PRK12377 putative replication protein; Provisional

Probab=97.99  E-value=6.6e-06  Score=58.44  Aligned_cols=28  Identities=39%  Similarity=0.650  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+++|+||||||||+|+.++++.+...
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~  128 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK  128 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3579999999999999999999988543

>KOG3347|consensus

Probab=97.99  E-value=6.2e-06  Score=54.29  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=27.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ..+||++|-|||||||++..+|..++...+.
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~   37 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIE   37 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEe
Confidence            4579999999999999999999998877543

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.99  E-value=5.4e-06  Score=59.92  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +..+..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus        29 i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   64 (288)
T PRK13643         29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT   64 (288)
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence            344556999999999999999999999887777653

>PRK13531 regulatory ATPase RavA; Provisional

Probab=97.99  E-value=9.5e-06  Score=62.47  Aligned_cols=30  Identities=30%  Similarity=0.612  Sum_probs=25.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +....+++|.||||||||++|++++...+.
T Consensus        36 alag~hVLL~GpPGTGKT~LAraLa~~~~~   65 (498)
T PRK13531         36 ALSGESVFLLGPPGIAKSLIARRLKFAFQN   65 (498)
T ss_pred             HccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence            345678999999999999999999997654

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.99  E-value=6.9e-06  Score=55.08  Aligned_cols=25  Identities=28%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      -++++||||+||||++++|+..+..
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCc
Confidence            4789999999999999999998754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.99  E-value=1.6e-05  Score=63.10  Aligned_cols=48  Identities=33%  Similarity=0.465  Sum_probs=36.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ ...+...            .....+||+||+|+|||++|+++|+.+..
T Consensus        17 ~liGq~~i~~~L-~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c   64 (620)
T PRK14948         17 ELVGQEAIATTL-KNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNC   64 (620)
T ss_pred             hccChHHHHHHH-HHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence            588999888776 4443321            12346999999999999999999999854

>PRK06921 hypothetical protein; Provisional

Probab=97.99  E-value=2.4e-05  Score=56.09  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=24.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+++|+|++|+|||+|+.++|+.+..
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~  143 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMR  143 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence            567999999999999999999998754

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.99  E-value=1.2e-05  Score=65.57  Aligned_cols=47  Identities=30%  Similarity=0.399  Sum_probs=35.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +|.|.+.+++.+ +..+...            +.+..+||+||+|||||++++++|+.+.
T Consensus        16 eiiGqe~v~~~L-~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~   62 (824)
T PRK07764         16 EVIGQEHVTEPL-STALDSG------------RINHAYLFSGPRGCGKTSSARILARSLN   62 (824)
T ss_pred             HhcCcHHHHHHH-HHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999888776 4433211            2234589999999999999999999985

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=97.99  E-value=5.8e-06  Score=57.94  Aligned_cols=36  Identities=22%  Similarity=0.485  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        21 ~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v   56 (235)
T cd03299          21 EVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKI   56 (235)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            445566799999999999999999999987766654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.98  E-value=1.3e-05  Score=53.35  Aligned_cols=27  Identities=33%  Similarity=0.466  Sum_probs=24.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .++|+|++||||||+++.+|..++.++
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~   30 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRF   30 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            588999999999999999999998764

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.98  E-value=9.9e-06  Score=55.24  Aligned_cols=23  Identities=39%  Similarity=0.514  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +.+.||+||||||+++++++.++
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67899999999999999999873

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.98  E-value=8.8e-06  Score=54.49  Aligned_cols=28  Identities=29%  Similarity=0.361  Sum_probs=24.4

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+..++|.|++||||||+++.++..+..
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~   33 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKL   33 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3456889999999999999999999864

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.98  E-value=7.8e-06  Score=64.21  Aligned_cols=45  Identities=18%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .++++.  ++++..+.++||+|+||||+++.+++.+.+..+.+..++
T Consensus       355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g  401 (574)
T PRK11160        355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNG  401 (574)
T ss_pred             ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence            455544  455566999999999999999999999988877764333

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.98  E-value=1.5e-05  Score=53.20  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=29.0

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.|=+++++++ ...+.          ...-..++.++++|++|+|||++++.+...+...
T Consensus         2 fvgR~~e~~~l-~~~l~----------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen    2 FVGREEEIERL-RDLLD----------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -TT-HHHHHHH-HHTTG----------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHH-HHHHH----------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            45667777776 33331          1122335679999999999999999888877655

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.98  E-value=6.7e-06  Score=56.91  Aligned_cols=34  Identities=29%  Similarity=0.578  Sum_probs=27.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      |+++||||+||||+++.+|..++...   ++.++++.
T Consensus         3 I~v~G~pGsGKsT~a~~la~~~~~~~---is~~dl~r   36 (215)
T PRK00279          3 LILLGPPGAGKGTQAKFIAEKYGIPH---ISTGDMLR   36 (215)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcE---EECCccHH
Confidence            88999999999999999999998653   44444543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=97.98  E-value=6.6e-06  Score=58.27  Aligned_cols=31  Identities=29%  Similarity=0.335  Sum_probs=26.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.++..+.|.||+|+|||||++++++...+
T Consensus        25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~   55 (254)
T PRK10418         25 TLQRGRVLALVGGSGSGKSLTCAAALGILPA   55 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3445556999999999999999999999866

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.98  E-value=6.6e-06  Score=58.12  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=26.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.+...+.|.||+|+|||||++++++.+.+
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267         26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence            3445556889999999999999999998764

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.98  E-value=7.7e-06  Score=65.60  Aligned_cols=45  Identities=18%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             HHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          44 EVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        44 ~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      .+++++.  ++++..+.++||+|+||||+++.+++.+.+..+.+..+
T Consensus       488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id  534 (708)
T TIGR01193       488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN  534 (708)
T ss_pred             cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence            3455544  44456699999999999999999999998887776433

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=97.98  E-value=6.2e-06  Score=59.31  Aligned_cols=41  Identities=20%  Similarity=0.450  Sum_probs=32.0

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.+  .++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   67 (280)
T PRK13633         25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV   67 (280)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4444443  4455588999999999999999999988776765

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.98  E-value=5.4e-06  Score=56.89  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=29.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN---AREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~   85 (121)
                      .+.+...+.+.||+|+||||+++++++.+.   +..+.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i   67 (202)
T cd03233          29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI   67 (202)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE
Confidence            345556699999999999999999999987   455554

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09183 transposase/IS protein; Provisional

Probab=97.97  E-value=7.1e-06  Score=58.58  Aligned_cols=28  Identities=36%  Similarity=0.545  Sum_probs=23.9

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ...+++|+||||||||+++.+++.....
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~  128 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAVR  128 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            4567999999999999999999887543

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.97  E-value=7.3e-06  Score=57.80  Aligned_cols=30  Identities=23%  Similarity=0.452  Sum_probs=25.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.+.||+|+||||+++++++.+.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         25 EIPDNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            344555689999999999999999999875

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=97.97  E-value=6.8e-06  Score=57.65  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=29.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.+...+.|.||+|+||||++++|++.+.+..+.+
T Consensus        22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i   57 (237)
T TIGR00968        22 EVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI   57 (237)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            345566699999999999999999999876655544

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=97.97  E-value=1.1e-05  Score=55.96  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=29.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.....+.+.||+|+||||++++|++.+.+..+.+.
T Consensus        28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~   63 (220)
T TIGR02982        28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK   63 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            344556999999999999999999998877666653

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK08181 transposase; Validated

Probab=97.97  E-value=6.4e-06  Score=59.19  Aligned_cols=28  Identities=43%  Similarity=0.759  Sum_probs=24.1

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ...+++|+||+|||||.|+.+++..+..
T Consensus       105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~  132 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIE  132 (269)
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            3567999999999999999999987643

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.96  E-value=6.3e-06  Score=59.49  Aligned_cols=36  Identities=19%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i   64 (287)
T PRK13641         29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI   64 (287)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            344555689999999999999999999988776765

>PRK08233 hypothetical protein; Provisional

Probab=97.96  E-value=7.4e-06  Score=54.74  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      -|.+.|+||+||||+++.++..++.
T Consensus         5 iI~I~G~~GsGKtTla~~L~~~l~~   29 (182)
T PRK08233          5 IITIAAVSGGGKTTLTERLTHKLKN   29 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            3678899999999999999998863

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.96  E-value=7.3e-06  Score=53.93  Aligned_cols=37  Identities=27%  Similarity=0.457  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.+...+++.||+|+||||+++++++.+....+.+.
T Consensus        21 ~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~   57 (157)
T cd00267          21 TLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL   57 (157)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence            3445567899999999999999999999877766653

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=97.96  E-value=1e-05  Score=57.47  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  +.+...+.+.|++|+|||||++++++.+.+..+.+.
T Consensus        36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   79 (257)
T cd03288          36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV   79 (257)
T ss_pred             ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence            444443  445566999999999999999999999876666653

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.96  E-value=8.5e-06  Score=65.37  Aligned_cols=43  Identities=21%  Similarity=0.413  Sum_probs=34.5

Q ss_pred             HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+++++.+  +++..+.++||+||||||+++++++.+.+..+.+.
T Consensus       493 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~  537 (710)
T TIGR03796       493 PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL  537 (710)
T ss_pred             CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            45555544  44556999999999999999999999988877764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.96  E-value=8.3e-06  Score=55.86  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=29.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+||||+++++++..  .+..+.+.
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~   60 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL   60 (200)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE
Confidence            44556669999999999999999999984  45556553

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.96  E-value=9.9e-06  Score=59.61  Aligned_cols=29  Identities=17%  Similarity=0.346  Sum_probs=24.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +..+..+.|.|++||||||++++|++.+.
T Consensus        30 i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         30 VKQGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            34445588999999999999999999886

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.96  E-value=1.1e-05  Score=56.51  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      ..-+.+.|++|+||||+.++|++......+.+...+..+..
T Consensus        29 Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~   69 (237)
T COG0410          29 GEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITG   69 (237)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCC
Confidence            44488999999999999999999999887887656555543

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.96  E-value=7.1e-06  Score=60.26  Aligned_cols=42  Identities=14%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.+  .++..+.|.||+|||||||+++|++.+.+..+.+.
T Consensus        41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~   84 (320)
T PRK13631         41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ   84 (320)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            4555444  44555999999999999999999999888777663

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.95  E-value=8.9e-06  Score=58.09  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=26.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   71 (267)
T PRK14235         41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT   71 (267)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence            3445566999999999999999999998763

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.95  E-value=8.6e-06  Score=57.55  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+||||+++++++...
T Consensus        28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14242         28 EFEQNQVTALIGPSGCGKSTFLRCLNRMND   57 (253)
T ss_pred             EEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            344555689999999999999999998753

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=97.95  E-value=7.5e-06  Score=59.15  Aligned_cols=41  Identities=27%  Similarity=0.350  Sum_probs=31.2

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++.+.  +.++..+.|.||+|+|||||+++|++.+.+..+.+
T Consensus        52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I   94 (282)
T cd03291          52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI   94 (282)
T ss_pred             ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            344433  44455689999999999999999999987766654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.95  E-value=9.8e-06  Score=55.41  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.8

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.-++|+||+||||||+++.+++.+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            445689999999999999999999875

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=7.6e-06  Score=59.19  Aligned_cols=36  Identities=14%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.....+.|.||+|+||||+++++++.+.+..+.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (290)
T PRK13634         29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV   64 (290)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            344555699999999999999999999988776765

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=97.94  E-value=1.2e-05  Score=59.28  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+..+..+.|.|++|||||||+++|++.+.
T Consensus        29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         29 TLTEGEIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            344455699999999999999999999875

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=97.94  E-value=1e-05  Score=57.59  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=29.7

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+...+.+.||+|+|||||++++++.+.+..+.+
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I   57 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF   57 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            4455699999999999999999999998887775

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.94  E-value=1.1e-05  Score=55.01  Aligned_cols=25  Identities=48%  Similarity=0.852  Sum_probs=22.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |.+.||+||||||+|+.|+..++..
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~~   26 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNKR   26 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCcc
Confidence            6789999999999999999999854

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.94  E-value=1.7e-05  Score=62.71  Aligned_cols=48  Identities=27%  Similarity=0.400  Sum_probs=36.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +|.|.+..++.+ +..+...            +.+..+||+||+|+|||++|+++|+.+..
T Consensus        17 dIiGQe~v~~~L-~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C   64 (624)
T PRK14959         17 EVAGQETVKAIL-SRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNC   64 (624)
T ss_pred             HhcCCHHHHHHH-HHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence            588988876665 4444221            22346999999999999999999998854

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.94  E-value=8.9e-06  Score=57.38  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=25.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         25 KIFKNQITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            345555689999999999999999998765

>PRK14529 adenylate kinase; Provisional

Probab=97.94  E-value=1.8e-05  Score=55.35  Aligned_cols=28  Identities=25%  Similarity=0.509  Sum_probs=24.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .++|.||||+||||+++.|+..++...+
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i   29 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHI   29 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence            3889999999999999999999987643

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.94  E-value=7.4e-06  Score=51.05  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=21.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIG   75 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la   75 (121)
                      +.....++|.||+||||||+++++.
T Consensus        12 i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          12 VYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            3445679999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.94  E-value=1.1e-05  Score=54.43  Aligned_cols=27  Identities=30%  Similarity=0.685  Sum_probs=23.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..++++||+||||||+++++++.++..
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~   30 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAK   30 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            347899999999999999999998763

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.94  E-value=4.7e-06  Score=57.52  Aligned_cols=40  Identities=25%  Similarity=0.331  Sum_probs=31.1

Q ss_pred             HHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          47 EQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        47 ~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++.+....  -..+.||+|+||||++|.+|..+.++.+.+.
T Consensus        19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~   60 (245)
T COG4555          19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT   60 (245)
T ss_pred             hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence            334444433  3779999999999999999999988877763

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.94  E-value=9.9e-06  Score=63.70  Aligned_cols=44  Identities=20%  Similarity=0.245  Sum_probs=34.5

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      +++++.  ++++..++++|++||||||+++.+++.+.+..+.+..+
T Consensus       356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id  401 (592)
T PRK10790        356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD  401 (592)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence            455544  44455699999999999999999999998887776433

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=7.1e-06  Score=59.86  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        30 i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i   64 (305)
T PRK13651         30 INQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI   64 (305)
T ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            34455699999999999999999999988777765

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.94  E-value=8.7e-06  Score=58.46  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=29.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.++..+.|.|++|+|||||++++++.+.+..+.+
T Consensus        29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i   64 (277)
T PRK13642         29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV   64 (277)
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence            344455699999999999999999999987776665

>PRK13975 thymidylate kinase; Provisional

Probab=97.93  E-value=4.1e-05  Score=51.94  Aligned_cols=26  Identities=38%  Similarity=0.455  Sum_probs=23.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|+|.|++|+||||+++.++..++..
T Consensus         4 ~I~ieG~~GsGKtT~~~~L~~~l~~~   29 (196)
T PRK13975          4 FIVFEGIDGSGKTTQAKLLAEKLNAF   29 (196)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            48899999999999999999999753

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.93  E-value=4e-05  Score=54.64  Aligned_cols=29  Identities=41%  Similarity=0.669  Sum_probs=25.8

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ...+++|+||||+|||.|+-|++..+...
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~  132 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKA  132 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHc
Confidence            56689999999999999999999998743

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.93  E-value=9.3e-06  Score=63.79  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+|+||||+++.+++.+ +..+.+.
T Consensus       365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~  407 (588)
T PRK11174        365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK  407 (588)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence            445544  4455669999999999999999999999 6667663

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.93  E-value=1e-05  Score=62.75  Aligned_cols=42  Identities=19%  Similarity=0.367  Sum_probs=33.7

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+|+||||+++.+++.+.+..+.+.
T Consensus       337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~  380 (529)
T TIGR02857       337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA  380 (529)
T ss_pred             cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            455554  445556999999999999999999999988877763

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PLN02199 shikimate kinase

Probab=97.93  E-value=1.8e-05  Score=57.51  Aligned_cols=38  Identities=18%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      ..+|+|+|.+||||||+++.+|..++.++   ++...++..
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~f---IDtD~lIe~  139 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTF---FDCDTLIEQ  139 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCE---EehHHHHHH
Confidence            56799999999999999999999998775   444444444

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.93  E-value=9e-06  Score=58.55  Aligned_cols=38  Identities=18%  Similarity=0.333  Sum_probs=29.1

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +++.+.  +.++..+.|.||+|+|||||+++|++.+.+..
T Consensus        22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~   61 (282)
T PRK13640         22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD   61 (282)
T ss_pred             ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence            344444  34455589999999999999999999986654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.93  E-value=1.2e-05  Score=64.66  Aligned_cols=42  Identities=21%  Similarity=0.405  Sum_probs=34.0

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+|+||||+++.+++.+.+..+.+.
T Consensus       496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~  539 (711)
T TIGR00958       496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL  539 (711)
T ss_pred             cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence            455544  445566999999999999999999999988877763

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.93  E-value=1.2e-05  Score=52.17  Aligned_cols=25  Identities=28%  Similarity=0.638  Sum_probs=22.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++|+||+|+|||++++.+++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~~   26 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPN   26 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCcc
Confidence            6789999999999999999987544

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=97.92  E-value=7.7e-06  Score=63.21  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+..+..+.|+||+|+|||||++++++.+.+..+.+.
T Consensus        26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~   62 (501)
T PRK10762         26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL   62 (501)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3444556899999999999999999999877767653

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.92  E-value=1.4e-05  Score=62.49  Aligned_cols=44  Identities=16%  Similarity=0.334  Sum_probs=34.4

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      +++++.+  +++..++++|++|+||||+++++++.+.+..+.+..+
T Consensus       347 il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~  392 (571)
T TIGR02203       347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD  392 (571)
T ss_pred             cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence            4455444  4566699999999999999999999998877776433

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=97.91  E-value=1.1e-06  Score=61.83  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=43.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh--HHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES--EANVRRLFADA  110 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~f~~a  110 (121)
                      +....-+.|.||+|+||||+..++.+.+.++.+.+...+..+.......  ..-+.+.||..
T Consensus        27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~   88 (250)
T COG0411          27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQIT   88 (250)
T ss_pred             EcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccc
Confidence            3444558899999999999999999999999999877777665543332  12244455543

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.91  E-value=9.2e-06  Score=58.53  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+..+..+.|.||+|+||||++++|++.+.+..+.+
T Consensus        28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i   63 (283)
T PRK13636         28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI   63 (283)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE
Confidence            344555699999999999999999999987776665

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.91  E-value=1.2e-05  Score=57.66  Aligned_cols=35  Identities=17%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +++++.  +.++..+.|.|++|+|||||+++|++.+.
T Consensus        39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            344443  44455689999999999999999999875

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.91  E-value=1.1e-05  Score=57.43  Aligned_cols=30  Identities=23%  Similarity=0.446  Sum_probs=25.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+|||||++++++.+.
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            344555689999999999999999999875

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.91  E-value=1.4e-05  Score=62.52  Aligned_cols=42  Identities=19%  Similarity=0.436  Sum_probs=33.4

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..++++|++|+||||+++.+++.+.+..+.+.
T Consensus       355 iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~  398 (576)
T TIGR02204       355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL  398 (576)
T ss_pred             cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence            445544  445666999999999999999999999988777653

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.91  E-value=1.2e-05  Score=64.45  Aligned_cols=43  Identities=12%  Similarity=0.285  Sum_probs=34.3

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      +++++.  ++++..+.++|++|+||||+++.+++.+.+..+.+..
T Consensus       480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i  524 (694)
T TIGR03375       480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL  524 (694)
T ss_pred             ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            455544  4456669999999999999999999999888777643

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.91  E-value=1.3e-05  Score=62.80  Aligned_cols=42  Identities=21%  Similarity=0.372  Sum_probs=33.4

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .++++.  ++++..+.++||+|+||||+++.+++.+.+..+.+.
T Consensus       330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~  373 (569)
T PRK10789        330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIR  373 (569)
T ss_pred             cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEE
Confidence            455544  345556999999999999999999999988777663

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.90  E-value=2.1e-05  Score=62.46  Aligned_cols=45  Identities=33%  Similarity=0.506  Sum_probs=32.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+..++.+ ...+             ....+..++|+|||||||||+|+++.+..
T Consensus       155 ~iiGqs~~~~~l-~~~i-------------a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~  199 (615)
T TIGR02903       155 EIVGQERAIKAL-LAKV-------------ASPFPQHIILYGPPGVGKTTAARLALEEA  199 (615)
T ss_pred             hceeCcHHHHHH-HHHH-------------hcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            477777777765 2222             11234569999999999999999998776

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.90  E-value=1.1e-05  Score=63.42  Aligned_cols=40  Identities=20%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      +.++++..+++.||||||||++.|++|+......+.+..+
T Consensus       414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P  453 (604)
T COG4178         414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP  453 (604)
T ss_pred             eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence            4456666799999999999999999999987766665433

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.90  E-value=1.2e-05  Score=56.94  Aligned_cols=31  Identities=26%  Similarity=0.372  Sum_probs=26.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.+...+.|.||+|+|||||++++++.+.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   59 (254)
T PRK14273         29 KILKNSITALIGPSGCGKSTFLRTLNRMNDL   59 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence            3445556889999999999999999998764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.90  E-value=1.2e-05  Score=57.40  Aligned_cols=29  Identities=31%  Similarity=0.464  Sum_probs=24.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+.++..+.|.||+|+|||||++++++..
T Consensus        43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         43 DIEKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            34455568999999999999999999975

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=97.90  E-value=1.9e-05  Score=53.21  Aligned_cols=24  Identities=33%  Similarity=0.529  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |+|.|++|+||||+++.++..+..
T Consensus         3 I~ieG~~GsGKtT~~~~L~~~l~~   26 (200)
T cd01672           3 IVFEGIDGAGKTTLIELLAERLEA   26 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999999854

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.90  E-value=1.2e-05  Score=63.16  Aligned_cols=41  Identities=20%  Similarity=0.463  Sum_probs=33.1

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  ++++..++++|++|+||||+++.+++.+.+..+.+
T Consensus       350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I  392 (588)
T PRK13657        350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI  392 (588)
T ss_pred             eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            455544  44555699999999999999999999998877665

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=97.90  E-value=1.1e-05  Score=61.09  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=29.6

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.....+.|.||+|+||||++|+|++.+.+..+.+.
T Consensus        26 i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~   61 (402)
T PRK09536         26 VREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL   61 (402)
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence            344555889999999999999999999887767653

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.90  E-value=1.5e-05  Score=59.97  Aligned_cols=36  Identities=17%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      .+..+.|.||+|+|||||+++|++.+.+..+.+...
T Consensus        49 ~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~id   84 (382)
T TIGR03415        49 EGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVK   84 (382)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence            344488999999999999999999998877776433

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=97.89  E-value=1e-05  Score=57.11  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=27.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHH--hcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQM--LNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~--~~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||+++|++.  +.+..+.+
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i   66 (252)
T CHL00131         29 SINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI   66 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE
Confidence            3455566899999999999999999996  33444443

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.89  E-value=9e-06  Score=62.94  Aligned_cols=41  Identities=15%  Similarity=0.233  Sum_probs=31.4

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.+  ..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i   62 (510)
T PRK09700         20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI   62 (510)
T ss_pred             EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE
Confidence            3444443  4445588999999999999999999987766665

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.89  E-value=1.3e-05  Score=56.64  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=25.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+||||+++++++.+.
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         26 DFEEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            344555689999999999999999999875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.88  E-value=1.1e-05  Score=57.16  Aligned_cols=30  Identities=23%  Similarity=0.423  Sum_probs=25.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+|||||++.+++.+.
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            344556699999999999999999999875

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.88  E-value=1.1e-05  Score=57.41  Aligned_cols=40  Identities=13%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .+++++.+  .++..+.+.||+|+||||++++|++...+..+
T Consensus        24 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G   65 (257)
T PRK14246         24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS   65 (257)
T ss_pred             eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence            34445443  44556999999999999999999998766543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.88  E-value=1e-05  Score=55.04  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=27.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc--CCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN--AREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~--~~~~~~   85 (121)
                      .+.+...+.|.||+|+||||+++++++...  +..+.+
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i   66 (192)
T cd03232          29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI   66 (192)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Confidence            344556689999999999999999998642  344554

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=97.88  E-value=1.5e-05  Score=58.33  Aligned_cols=28  Identities=39%  Similarity=0.663  Sum_probs=25.0

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ...|++|+||+|+|||.|+.++|+++..
T Consensus       155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~  182 (306)
T PRK08939        155 KVKGLYLYGDFGVGKSYLLAAIANELAK  182 (306)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999999853

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.88  E-value=1.2e-05  Score=57.19  Aligned_cols=32  Identities=25%  Similarity=0.579  Sum_probs=26.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.+.
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~   57 (262)
T PRK09984         26 NIHHGEMVALLGPSGSGKSTLLRHLSGLITGD   57 (262)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            34455669999999999999999999988643

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=97.88  E-value=9.7e-06  Score=62.45  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=30.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.++..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~   61 (490)
T PRK10938         25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ   61 (490)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE
Confidence            3445566999999999999999999999877667653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=97.88  E-value=9.8e-06  Score=64.50  Aligned_cols=42  Identities=14%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  +.++..+.|+||+|||||||+++|++.+.+..+.+.
T Consensus        16 ~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~   59 (638)
T PRK10636         16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYT   59 (638)
T ss_pred             eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            444443  444556999999999999999999999877777653

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=97.88  E-value=1.3e-05  Score=62.60  Aligned_cols=42  Identities=19%  Similarity=0.342  Sum_probs=33.4

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .++++.  ++++..+.+.||+|+||||+++.+++.+.+..+.+.
T Consensus       338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~  381 (547)
T PRK10522        338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL  381 (547)
T ss_pred             EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            444444  445556999999999999999999999988877763

>PRK08116 hypothetical protein; Validated

Probab=97.88  E-value=1.3e-05  Score=57.50  Aligned_cols=26  Identities=46%  Similarity=0.652  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..+++|+|++|+|||.|+.++++.+.
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~  139 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELI  139 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            35699999999999999999999874

>PRK04182 cytidylate kinase; Provisional

Probab=97.88  E-value=1.3e-05  Score=53.36  Aligned_cols=26  Identities=42%  Similarity=0.788  Sum_probs=23.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      |++.|++||||||+++.+|..++.++
T Consensus         3 I~i~G~~GsGKstia~~la~~lg~~~   28 (180)
T PRK04182          3 ITISGPPGSGKTTVARLLAEKLGLKH   28 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCcE
Confidence            78999999999999999999998764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.88  E-value=1e-05  Score=62.65  Aligned_cols=42  Identities=14%  Similarity=0.077  Sum_probs=31.9

Q ss_pred             HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.+..  +..+.|.||+|||||||++++++.+.+..+.+.
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~  321 (510)
T PRK09700        278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR  321 (510)
T ss_pred             cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence            445544443  445889999999999999999999877666653

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.88  E-value=7.9e-06  Score=53.46  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=26.2

Q ss_pred             EEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632          59 LYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY   95 (121)
Q Consensus        59 l~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~   95 (121)
                      +.||||+||||+|+.||..++..   .++.++++...
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~---~is~~~llr~~   34 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLV---HISVGDLLREE   34 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSE---EEEHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCcc---eechHHHHHHH
Confidence            68999999999999999999754   24455555443

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.87  E-value=3e-05  Score=60.51  Aligned_cols=47  Identities=23%  Similarity=0.292  Sum_probs=35.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++.+ ...+..           + ..+..++|+||+|+|||++|+++|+.+.
T Consensus        15 eiiGqe~v~~~L-~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~   61 (535)
T PRK08451         15 ELIGQESVSKTL-SLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALV   61 (535)
T ss_pred             HccCcHHHHHHH-HHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            699999887776 433321           1 2345579999999999999999999873

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.87  E-value=1.3e-05  Score=57.38  Aligned_cols=30  Identities=30%  Similarity=0.464  Sum_probs=25.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.+...+.|.||+|+|||||+++|++...
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         35 DIPRGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            344555688999999999999999999865

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.87  E-value=1.4e-05  Score=56.41  Aligned_cols=36  Identities=33%  Similarity=0.460  Sum_probs=28.0

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +++++.  +.++..+.|.||+|+||||+++++++.+.+
T Consensus        19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   56 (252)
T PRK14272         19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDL   56 (252)
T ss_pred             eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            344443  445566889999999999999999998754

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.86  E-value=1.4e-05  Score=56.28  Aligned_cols=30  Identities=27%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.+...+.|+||+|+|||||++++++.+.
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (246)
T PRK14269         24 QIEQNKITALIGASGCGKSTFLRCFNRMND   53 (246)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            345556699999999999999999999864

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.86  E-value=1.5e-05  Score=62.13  Aligned_cols=41  Identities=22%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .++++.  ++++..+.++||+||||||+++++++.+.+..+.+
T Consensus       333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  375 (544)
T TIGR01842       333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV  375 (544)
T ss_pred             ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            444544  44556699999999999999999999998776765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.86  E-value=1.6e-05  Score=56.13  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=25.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+|||||++++++...
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (251)
T PRK14270         26 PIYENKITALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            344555688999999999999999999865

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.86  E-value=1.1e-05  Score=55.53  Aligned_cols=32  Identities=28%  Similarity=0.507  Sum_probs=25.5

Q ss_pred             HHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          47 EQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        47 ~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+.++..+.++|+||+|+||||++|.++...
T Consensus        18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          18 NDIDMEKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             ceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            34455555678999999999999999999654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.86  E-value=1.5e-05  Score=56.93  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=27.5

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +++++.  +.++..+.|.||+|+|||||+++|++.+.
T Consensus        35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            344433  44455699999999999999999999875

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.86  E-value=1.7e-05  Score=55.90  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=26.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.++..+.|.||+|+||||+++++++...+
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (249)
T PRK14253         25 PIPARQVTALIGPSGCGKSTLLRCLNRMNDL   55 (249)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence            3445566899999999999999999998764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=97.86  E-value=1.2e-05  Score=56.56  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=28.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh--cCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML--NAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~--~~~~~~~   85 (121)
                      .+.++..+.|.||+|+|||||++++++..  .+..+.+
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i   60 (248)
T PRK09580         23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV   60 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE
Confidence            34455568999999999999999999984  3444554

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.86  E-value=1.5e-05  Score=62.19  Aligned_cols=54  Identities=20%  Similarity=0.346  Sum_probs=38.6

Q ss_pred             HHHHh--CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhch
Q psy3632          45 VVEQL--GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGE   98 (121)
Q Consensus        45 ~~~~~--~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~   98 (121)
                      +++.+  .+..+..|.++||+|+|||||++.|++.++...+.+..+..+...|+..
T Consensus       337 l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q  392 (530)
T COG0488         337 LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQ  392 (530)
T ss_pred             eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEe
Confidence            44443  4455666999999999999999999999887777665455444444433

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.86  E-value=1.1e-05  Score=54.51  Aligned_cols=27  Identities=15%  Similarity=0.142  Sum_probs=21.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+.++.-+.+.||+|||||||++++..
T Consensus        17 ~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          17 SIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            344455688999999999999999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.86  E-value=5.2e-05  Score=53.60  Aligned_cols=24  Identities=33%  Similarity=0.733  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |+|+|+||+||||+|+.++..+..
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~   25 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSE   25 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999998853

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.86  E-value=4.6e-05  Score=48.75  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy3632          57 ILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +.|+|++|||||.+++.||+.+
T Consensus        56 lSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   56 LSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             EEeecCCCCcHHHHHHHHHHHH
Confidence            5589999999999999999985

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.86  E-value=2.8e-05  Score=52.62  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+..+.++.|+||+|+||||+.|.+-.-+.++.+.+
T Consensus        32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I   68 (235)
T COG4778          32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI   68 (235)
T ss_pred             EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE
Confidence            3445567899999999999999999998887776665

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=97.86  E-value=1.1e-05  Score=62.75  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +..+..+.|+||+|||||||++++++.+.+..+.+
T Consensus        16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i   58 (530)
T PRK15064         16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV   58 (530)
T ss_pred             eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            444443  44455699999999999999999999887666664

>PRK06835 DNA replication protein DnaC; Validated

Probab=97.85  E-value=2.5e-05  Score=57.68  Aligned_cols=27  Identities=37%  Similarity=0.639  Sum_probs=24.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+++|+||+|+|||+|+.++|.++-.
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~  209 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLD  209 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence            368999999999999999999998743

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.85  E-value=1.5e-05  Score=56.23  Aligned_cols=30  Identities=27%  Similarity=0.474  Sum_probs=25.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+|||||+++|++...
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14240         25 DIEENQVTALIGPSGCGKSTFLRTLNRMND   54 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            344566689999999999999999999754

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.85  E-value=1.9e-05  Score=61.81  Aligned_cols=46  Identities=15%  Similarity=0.378  Sum_probs=35.5

Q ss_pred             HHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          44 EVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        44 ~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .+++++.  ++++..+.++||+||||||+++.+++.+.+..+.+..++
T Consensus       343 ~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg  390 (567)
T COG1132         343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDG  390 (567)
T ss_pred             ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECC
Confidence            3445443  455666999999999999999999999998777764433

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.85  E-value=1.5e-05  Score=56.84  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.++..+.+.||+|+|||||++++++.+.+
T Consensus        30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (261)
T PRK14263         30 PIRKNEITGFIGPSGCGKSTVLRSLNRMNDL   60 (261)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence            4455667999999999999999999998754

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.85  E-value=1.2e-05  Score=57.09  Aligned_cols=30  Identities=20%  Similarity=0.436  Sum_probs=25.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.|.||+|+|||||+++|++.+.
T Consensus        34 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         34 SIPENEVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            344555699999999999999999999875

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.85  E-value=1.6e-05  Score=50.29  Aligned_cols=26  Identities=35%  Similarity=0.781  Sum_probs=20.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++++||+|+|||++++.++..+.
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence            34688999999999999999999874

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=97.85  E-value=1.2e-05  Score=63.05  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +..+..+.|.||+|||||||+++|++.+.+..+.+
T Consensus        22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i   64 (556)
T PRK11819         22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA   64 (556)
T ss_pred             eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            444444  44455699999999999999999999987766654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.84  E-value=1.8e-05  Score=55.93  Aligned_cols=29  Identities=24%  Similarity=0.381  Sum_probs=24.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +.++..+.|.||+|+|||||++++++...
T Consensus        28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244         28 IYKREVTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            44555688999999999999999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=97.84  E-value=1e-05  Score=64.35  Aligned_cols=42  Identities=14%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  +.++..+.|+||+|||||||+++|++...+..+.+.
T Consensus        18 il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~   61 (635)
T PRK11147         18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII   61 (635)
T ss_pred             eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence            444444  444556999999999999999999999877766653

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.84  E-value=2.3e-05  Score=50.80  Aligned_cols=24  Identities=42%  Similarity=0.786  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++++||||+|||+++..++.....
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~   25 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIAT   25 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHh
Confidence            689999999999999999998754

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=97.84  E-value=1.7e-05  Score=56.81  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=25.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++..+.+.||+|+||||+++++++.+.
T Consensus        47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            445566689999999999999999999865

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.84  E-value=1.2e-05  Score=62.25  Aligned_cols=42  Identities=17%  Similarity=0.270  Sum_probs=32.0

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.+  ..+..+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~   69 (510)
T PRK15439         26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE   69 (510)
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            3444443  44445889999999999999999999877667653

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=97.84  E-value=2e-05  Score=62.60  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=32.6

Q ss_pred             HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      +++++.+..  +..+.|.||+|||||||+++|++.+.+..+.+..
T Consensus       339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~  383 (623)
T PRK10261        339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIF  383 (623)
T ss_pred             EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEE
Confidence            344544443  4448899999999999999999998777677643

>TIGR00368 Mg chelatase-related protein

Probab=97.84  E-value=3e-05  Score=60.13  Aligned_cols=29  Identities=38%  Similarity=0.784  Sum_probs=24.7

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ...+++|.||||||||++++++++.+...
T Consensus       210 ~g~~vlliG~pGsGKTtlar~l~~llp~~  238 (499)
T TIGR00368       210 GGHNLLLFGPPGSGKTMLASRLQGILPPL  238 (499)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHhcccCCC
Confidence            34579999999999999999999877553

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>KOG0060|consensus

Probab=97.84  E-value=1.6e-05  Score=62.00  Aligned_cols=35  Identities=29%  Similarity=0.531  Sum_probs=28.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ++...++|++||+|||||+|.|++|+......+.+
T Consensus       458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l  492 (659)
T KOG0060|consen  458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL  492 (659)
T ss_pred             ecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE
Confidence            34455699999999999999999999887555554

>KOG0058|consensus

Probab=97.84  E-value=2.8e-05  Score=61.86  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=44.2

Q ss_pred             hhccCCC-hHHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          36 FASRVFP-PEVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        36 i~~~~~~-~~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      +.+|-++ ..+++++.  ++|+..+.|+||+|+||||++..+-+.+.+..+.+..++..++.
T Consensus       473 FaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~  534 (716)
T KOG0058|consen  473 FAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD  534 (716)
T ss_pred             eecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence            4455552 34777755  55566799999999999999999999999998888555544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		6e-13
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		2e-12
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		2e-12
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		2e-12
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		2e-12
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		2e-12
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		2e-12
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		3e-12
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		4e-12
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		2e-10
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		3e-10
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		3e-10
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		4e-10
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		8e-10
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		4e-08
3b9p_A	297	Spastin Length = 297		2e-07
2ce7_A	476	Edta Treated Length = 476		2e-07
3vfd_A	389	Human Spastin Aaa Domain Length = 389		3e-07
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		3e-07
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		3e-07
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		3e-07
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		4e-07
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		6e-07
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		7e-07
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		7e-07
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		8e-07
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		3e-06
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		4e-06
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		4e-06
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		4e-06
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		4e-06
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		5e-06
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		8e-06

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           +GGL K+   I +      V  PE+ E LG    KG++LYGPPGTGKTL+AR +    + 
Sbjct: 150 VGGLTKQIKEI-KEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC 208
Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
           +  + V+G +++ KY+GE    VR LF  A E
Sbjct: 209 KFIR-VSGAELVQKYIGEGSRMVRELFVMARE 239

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 20  GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN 79
           GIGGL ++   + R      +  PE+ +++G +  KG+LLYGPPGTGKTL+A+ +   + 
Sbjct: 182 GIGGLTEQIREL-REVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240
Query: 80  AREPKIVNGPQ--VLDKYVGESEANVRRLFADAEEEE 114
           A     +  P   ++DKY+GES   +R +FA A+E E
Sbjct: 241 A---NFIFSPASGIVDKYIGESARIIREMFAYAKEHE 274

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16  FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
            N++G   IGG  K+   I +      +  P + + +G +  +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73  QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
            +     A    ++NGP+++ K  GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16  FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
            N++G   IGG  K+   I +      +  P + + +G +  +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73  QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
            +     A    ++NGP+++ K  GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16  FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
            N++G   IGG  K+   I +      +  P + + +G +  +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73  QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
            +     A    ++NGP+++ K  GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 5/100 (5%)
Query: 16  FNKMG---IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMAR 72
            N++G   IGG  K+   I +      +  P + + +G +  +GILLYGPPGTGKTL+AR
Sbjct: 198 LNEVGYDDIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIAR 256
Query: 73  QIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
            +     A    ++NGP+++ K  GESE+N+R+ F +AE+
Sbjct: 257 AVANETGAFF-FLINGPEIMSKLAGESESNLRKAFEEAEK 295

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
           P + + +G +  +GILLYGPPGTGKTL+AR +     A    ++NGP+++ K  GESE+N
Sbjct: 227 PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESN 285
Query: 103 VRRLFADAEE 112
           +R+ F +AE+
Sbjct: 286 LRKAFEEAEK 295

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGL+K+   I R      +  PE+ E++G +  KGILLYGPPGTGKTL+A+ +    NA
Sbjct: 19  IGGLEKQMQEI-REVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA 77
Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
              ++V G +++ K++GE  + V+ +F  A+E+
Sbjct: 78  TFIRVV-GSELVKKFIGEGASLVKDIFKLAKEK 109

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
           P + + +G +  +GILLYGPPGTGKTL+AR +     A    ++NGP+++ K  GESE+N
Sbjct: 227 PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF-FLINGPEIMSKLAGESESN 285
Query: 103 VRRLFADAEE 112
           +R+ F +AE+
Sbjct: 286 LRKAFEEAEK 295

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 15  DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQI 74
           D     +GG   +   + R      +  PE    LG    KGILLYGPPGTGKTL AR +
Sbjct: 205 DVTYSDVGGCKDQIEKL-REVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
Query: 75  GQMLNAREPKIVNGPQVLDKYVGESEANVRRLF 107
               +A   +++ G +++ KYVGE    VR LF
Sbjct: 264 ANRTDATFIRVI-GSELVQKYVGEGARMVRELF 295

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           +GGLDK+   +   A    +   +  + +G +  KG L+YGPPGTGKTL+AR      NA
Sbjct: 183 VGGLDKQIEELVE-AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA 241
Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
              K+   PQ++  Y+GE    VR  FA A+E+
Sbjct: 242 TFLKLA-APQLVQMYIGEGAKLVRDAFALAKEK 273

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 15  DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQI 74
           D     +GGLD +   I R A    +   ++ EQ+G    +G+LLYGPPGTGKT++ + +
Sbjct: 168 DVTYADVGGLDMQKQEI-REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 75  GQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
                A   + VNG + + KY+GE    VR +F  A E
Sbjct: 227 ANSTKAAFIR-VNGSEFVHKYLGEGPRMVRDVFRLARE 263

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN 102
           P+   + G    KG+L YGPPG GKTL+A+ I     A    I  GP++L  + GESEAN
Sbjct: 38  PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI-KGPELLTMWFGESEAN 96
Query: 103 VRRLFADAEE 112
           VR +F  A +
Sbjct: 97  VREIFDKARQ 106

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 4/102 (3%)
Query: 11  SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLM 70
           SP+  ++   IGGL+ +   I + +    +  PE+ E++G +  KG++LYG PGTGKTL+
Sbjct: 176 SPTESYSD--IGGLESQIQEI-KESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL 232
Query: 71  ARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
           A+ +    +A   +IV G +++ KY+G+     R++F  A E
Sbjct: 233 AKAVANQTSATFLRIV-GSELIQKYLGDGPRLCRQIFKVAGE 273

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 35  AFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQ 90
           A  + V  P+  + LG     G+LL GPPG GKTL+A+ +     A E  +    V GP+
Sbjct: 25  AILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV-----ANESGLNFISVKGPE 79
Query: 91  VLDKYVGESEANVRRLFADAE 111
           +L+ YVGESE  VR++F  A+
Sbjct: 80  LLNMYVGESERAVRQVFQRAK 100

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 22  GGLDKEFTAIF-----RRAFASRVFPPEVVEQL--GCQH-VKGILLYGPPGTGKTLMARQ 73
           GG   E+T I      ++A    V  P V  +L  G +   KG+LL+GPPG GKTL+AR 
Sbjct: 14  GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARA 73
Query: 74  IGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA 110
           +    +A    I +   +  KYVG+ E  VR LFA A
Sbjct: 74  VATECSATFLNI-SAASLTSKYVGDGEKLVRALFAVA 109

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEA 101
           P    ++G +  KGILL GPPGTGKTL+AR +    N   P   ++G   ++ +VG   A
Sbjct: 38  PSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV--PFFHISGSDFVELFVGVGAA 95
Query: 102 NVRRLFADAE 111
            VR LFA A+
Sbjct: 96  RVRDLFAQAK 105

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 54  VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
            +G+LL+GPPG GKT++A+ +    NA    I +   +  KYVGE E  VR LFA A E
Sbjct: 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI-SAASLTSKYVGEGEKLVRALFAVARE 205

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54  VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
             GILLYGPPGTGK+ +A+ +    N+     V+   ++ K++GESE  V++LFA A E 
Sbjct: 51  TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 109
Query: 114 EKRV 117
           +  +
Sbjct: 110 KPSI 113

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54  VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
             GILLYGPPGTGK+ +A+ +    N+     V+   ++ K++GESE  V++LFA A E 
Sbjct: 60  TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 118
Query: 114 EKRV 117
           +  +
Sbjct: 119 KPSI 122

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54  VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
             GILLYGPPGTGK+ +A+ +    N+     V+   ++ K++GESE  V++LFA A E 
Sbjct: 69  TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 127
Query: 114 EKRV 117
           +  +
Sbjct: 128 KPSI 131

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 54  VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE 113
             GILLYGPPGTGK+ +A+ +    N+     V+   ++ K++GESE  V++LFA A E 
Sbjct: 84  TSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSDLVSKWMGESEKLVKQLFAMAREN 142
Query: 114 EKRV 117
           +  +
Sbjct: 143 KPSI 146

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
           +GILL+GPPGTGK+ +A+ +    N      ++   ++ K++GESE  V+ LF  A E +
Sbjct: 46  RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 105
Query: 115 KRV 117
             +
Sbjct: 106 PSI 108

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
           +GILL+GPPGTGK+ +A+ +    N      ++   ++ K++GESE  V+ LF  A E +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK 227
Query: 115 KRV 117
             +
Sbjct: 228 PSI 230

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
           KGILL+GPPGTGKTL+ + I     A    I +   +  K+VGE E  VR LFA A  ++
Sbjct: 118 KGILLFGPPGTGKTLIGKCIASQSGATFFSI-SASSLTSKWVGEGEKMVRALFAVARCQQ 176
Query: 115 KRV 117
             V
Sbjct: 177 PAV 179

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESEA 101
           P    ++G +  KGILL GPPGTG TL+AR +    N   P   ++G   ++ +VG   A
Sbjct: 38  PSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEANV--PFFHISGSDFVELFVGVGAA 95
Query: 102 NVRRLFADAE 111
            VR LFA A+
Sbjct: 96  RVRDLFAQAK 105

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P   ++LG +  KG+L+ GPPGTGKTL+A+ I     A E K+    ++G   ++ +VG 
Sbjct: 34  PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI-----AGEAKVPFFTISGSDFVEMFVGV 88
Query: 99  SEANVRRLFADAEE 112
             + VR +F  A++
Sbjct: 89  GASRVRDMFEQAKK 102

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           PE    LG +  KG+LL GPPGTGKTL+A+ +     A E  +    + G   ++ +VG 
Sbjct: 33  PERYANLGAKIPKGVLLVGPPGTGKTLLAKAV-----AGEAHVPFFSMGGSSFIEMFVGL 87
Query: 99  SEANVRRLFADAEEE 113
             + VR LF  A+++
Sbjct: 88  GASRVRDLFETAKKQ 102

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
           P    ++G +  KG+LL GPPG GKT +AR +     AR P I  +G   ++ +VG   A
Sbjct: 62  PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 119
Query: 102 NVRRLFADAE 111
            VR LF  A+
Sbjct: 120 RVRDLFETAK 129

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
           P    ++G +  KG+LL GPPG GKT +AR +     AR P I  +G   ++ +VG   A
Sbjct: 62  PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 119
Query: 102 NVRRLFADAE 111
            VR LF  A+
Sbjct: 120 RVRDLFETAK 129

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
           P    ++G +  KG+LL GPPG GKT +AR +     AR P I  +G   ++ +VG   A
Sbjct: 53  PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 110
Query: 102 NVRRLFADAE 111
            VR LF  A+
Sbjct: 111 RVRDLFETAK 120

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV-NGPQVLDKYVGESEA 101
           P    ++G +  KG+LL GPPG GKT +AR +     AR P I  +G   ++ +VG   A
Sbjct: 38  PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAG--EARVPFITASGSDFVEMFVGVGAA 95
Query: 102 NVRRLFADAE 111
            VR LF  A+
Sbjct: 96  RVRDLFETAK 105

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 34  RAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVL 92
           R F   +  PE   QLG +  KG LL GPPG GKTL+A+ +     A+ P + + G + +
Sbjct: 19  REFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT--EAQVPFLAMAGAEFV 76
Query: 93  DKYVGESEANVRRLFADA 110
           +   G   A VR LF +A
Sbjct: 77  EVIGGLGAARVRSLFKEA 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	4e-23
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	5e-23
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	2e-22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	4e-22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-21
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	2e-21
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	4e-18
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	1e-16
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	1e-15
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	2e-15
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	1e-14
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	4e-14
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	7e-14
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	4e-13
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	4e-12
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	8e-09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	1e-08
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	2e-08
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	2e-08
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	2e-07
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	3e-07
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	5e-07
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	9e-06
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	5e-05
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	5e-05
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	7e-05
2qgz_A	308	Helicase loader, putative primosome component; str	9e-05
3pvs_A	447	Replication-associated recombination protein A; ma	1e-04
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	2e-04
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	2e-04
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	2e-04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	2e-04
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	2e-04
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	5e-04
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	9e-04

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score = 90.0 bits (224), Expect = 4e-23
 Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 9/72 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P+   + G    KG+L YGPPG GKTL+A+ I     A E +     + GP++L  + GE
Sbjct: 38  PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI-----ANECQANFISIKGPELLTMWFGE 92

Query: 99  SEANVRRLFADA 110
           SEANVR +F  A
Sbjct: 93  SEANVREIFDKA 104

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 89.2 bits (222), Expect = 5e-23
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 9/72 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P+  + LG     G+LL GPPG GKTL+A+ +     A E  +    V GP++L+ YVGE
Sbjct: 33  PDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV-----ANESGLNFISVKGPELLNMYVGE 87

Query: 99  SEANVRRLFADA 110
           SE  VR++F  A
Sbjct: 88  SERAVRQVFQRA 99

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 89.9 bits (223), Expect = 2e-22
 Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGG  K+   I +      +  P + + +G +  +GILLYGPPGTGKTL+AR +     A
Sbjct: 206 IGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
               I NGP+++ K  GESE+N+R+ F +AE+
Sbjct: 265 FFFLI-NGPEIMSKLAGESESNLRKAFEEAEK 295

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 10/117 (8%)

Query: 1   MEVQPRQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFP---PEVVEQLGCQHVKGI 57
           M  +  +    P+  +    IGGL+K+   I R        P   PE+ E++G +  KGI
Sbjct: 1   MRAKAMEVDERPNVRYE--DIGGLEKQMQEI-REVV---ELPLKHPELFEKVGIEPPKGI 54

Query: 58  LLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE 114
           LLYGPPGTGKTL+A+ +    NA   ++V G +++ K++GE  + V+ +F  A+E+ 
Sbjct: 55  LLYGPPGTGKTLLAKAVATETNATFIRVV-GSELVKKFIGEGASLVKDIFKLAKEKA 110

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 76.4 bits (188), Expect = 4e-18
 Identities = 10/77 (12%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 42  PPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEA 101
               ++    +    + ++G  G GK+     + + +    P +++  ++     GE   
Sbjct: 24  TKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI-NPIMMSAGELESGNAGEPAK 82

Query: 102 NVRRLFADAEEEEKRVS 118
            +R+ + +A E  ++ +
Sbjct: 83  LIRQRYREAAEIIRKGN 99

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 2   EVQPRQSIISPSF-DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLY 60
           +++P        +  +   GI       T +            +  +      +  +LL 
Sbjct: 15  DIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDG----ELLVQQTKNSDRTPLVSVLLE 70

Query: 61  GPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEAN-VRRLFADAEE 112
           GPP +GKT +A +I +  N    KI   P  +  +   ++   ++++F DA +
Sbjct: 71  GPPHSGKTALAAKIAEESNFPFIKI-CSPDKMIGFSETAKCQAMKKIFDDAYK 122

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 10/63 (15%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI-----VNGPQVLDKYVGESEANVRRLFAD 109
           +GILL+GPPGTGK+ +A+ +     A E        ++   ++ K++GESE  V+ LF  
Sbjct: 46  RGILLFGPPGTGKSYLAKAV-----ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQL 100

Query: 110 AEE 112
           A E
Sbjct: 101 ARE 103

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 9/62 (14%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGESEANVRRLFADA 110
            GILLYGPPGTGK+ +A+ +     A E       V+   ++ K++GESE  V++LFA A
Sbjct: 52  SGILLYGPPGTGKSYLAKAV-----ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 106

Query: 111 EE 112
            E
Sbjct: 107 RE 108

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 10/74 (13%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           PE+   L     KG+LL+GPPG GKTL+AR +     A E       ++   +  KYVG+
Sbjct: 44  PELFTGLR-APAKGLLLFGPPGNGKTLLARAV-----ATECSATFLNISAASLTSKYVGD 97

Query: 99  SEANVRRLFADAEE 112
            E  VR LFA A  
Sbjct: 98  GEKLVRALFAVARH 111

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 27/62 (43%), Positives = 35/62 (56%), Gaps = 9/62 (14%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGESEANVRRLFADA 110
           KGILL+GPPGTGKTL+ + I     A +       ++   +  K+VGE E  VR LFA A
Sbjct: 118 KGILLFGPPGTGKTLIGKCI-----ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVA 172

Query: 111 EE 112
             
Sbjct: 173 RC 174

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score = 65.2 bits (159), Expect = 7e-14
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 9/62 (14%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGESEANVRRLFADA 110
           +G+LL+GPPG GKT++A+ +     A E       ++   +  KYVGE E  VR LFA A
Sbjct: 149 RGLLLFGPPGNGKTMLAKAV-----AAESNATFFNISAASLTSKYVGEGEKLVRALFAVA 203

Query: 111 EE 112
            E
Sbjct: 204 RE 205

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 63.4 bits (154), Expect = 4e-13
 Identities = 23/58 (39%), Positives = 36/58 (62%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEE 112
           +GILL+GPPGTGK+ +A+ +    N      ++   ++ K++GESE  V+ LF  A E
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 225

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 9/62 (14%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGESEANVRRLFADA 110
            GILLYGPPGTGK+ +A+ +     A E       V+   ++ K++GESE  V++LFA A
Sbjct: 85  SGILLYGPPGTGKSYLAKAV-----ATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA 139

Query: 111 EE 112
            E
Sbjct: 140 RE 141

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 50.7 bits (122), Expect = 8e-09
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           PE   QLG +  KG LL GPPG GKTL+A+ +     A E ++    + G + ++   G 
Sbjct: 28  PERFLQLGAKVPKGALLLGPPGCGKTLLAKAV-----ATEAQVPFLAMAGAEFVEVIGGL 82

Query: 99  SEANVRRLFADAEE 112
             A VR LF +A  
Sbjct: 83  GAARVRSLFKEARA 96

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P    ++G +  KG+LL GPPG GKT +AR +     A E ++     +G   ++ +VG 
Sbjct: 38  PSRFHEMGARIPKGVLLVGPPGVGKTHLARAV-----AGEARVPFITASGSDFVEMFVGV 92

Query: 99  SEANVRRLFADAEE 112
             A VR LF  A+ 
Sbjct: 93  GAARVRDLFETAKR 106

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 9/74 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P   ++LG +  KG+L+ GPPGTGKTL+A+ I     A E K+    ++G   ++ +VG 
Sbjct: 34  PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI-----AGEAKVPFFTISGSDFVEMFVGV 88

Query: 99  SEANVRRLFADAEE 112
             + VR +F  A++
Sbjct: 89  GASRVRDMFEQAKK 102

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 9/74 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           P    ++G +  KG+LL GPPG GKT +AR +     A E ++     +G   ++ +VG 
Sbjct: 62  PSRFHEMGARIPKGVLLVGPPGVGKTHLARAV-----AGEARVPFITASGSDFVEMFVGV 116

Query: 99  SEANVRRLFADAEE 112
             A VR LF  A+ 
Sbjct: 117 GAARVRDLFETAKR 130

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 9/74 (12%)

Query: 43  PEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI----VNGPQVLDKYVGE 98
           PE    LG +  KG+LL GPPGTGKTL+A+ +     A E  +    + G   ++ +VG 
Sbjct: 33  PERYANLGAKIPKGVLLVGPPGTGKTLLAKAV-----AGEAHVPFFSMGGSSFIEMFVGL 87

Query: 99  SEANVRRLFADAEE 112
             + VR LF  A++
Sbjct: 88  GASRVRDLFETAKK 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-07
 Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 67/174 (38%)

Query: 1   MEVQPRQSIISPSFDFNKMGIGGLDKEFTA--IFRRAFASRVFPPEVVEQL-----GCQH 53
           ++ + RQ    PS    +M I   D+ +    +F +   SR    +   +L       + 
Sbjct: 98  IKTEQRQ----PSMM-TRMYIEQRDRLYNDNQVFAKYNVSR---LQPYLKLRQALLELRP 149

Query: 54  VKGILLYGPPGTGKTLMA---------------------------------------RQI 74
            K +L+ G  G+GKT +A                                        QI
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 75  GQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKR-------VSHKW 121
                +R     N    +       +A +RRL     +  +        V +  
Sbjct: 210 DPNWTSRSDHSSNIKLRIH----SIQAELRRLL--KSKPYENCLLVLLNVQNAK 257

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 9/40 (22%)

Query: 44 EVVE---------QLGCQHVKGILLYGPPGTGKTLMARQI 74
          EVVE         ++G +  KGILL GPPGTGKTL+AR +
Sbjct: 30 EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAV 69

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 9/40 (22%)

Query: 44 EVVE---------QLGCQHVKGILLYGPPGTGKTLMARQI 74
          E+VE         ++G +  KG+LL GPPG GKT +AR +
Sbjct: 45 EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 84

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 46.0 bits (109), Expect = 5e-07
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 42  PPEVVEQLGCQHVKGILLYGPPGTGKT----LMARQIGQM---LNA 80
             +   + G    +  +LYGPPG GKT    L+A+++G      NA
Sbjct: 65  SFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 56  GILLYGPPGTGKTLMARQIGQM------LNAREPKIVNGPQVLDKYVGESEANVRRLFAD 109
            +   G PGTGKT +A ++  +      +       V    ++ +Y+G +    + +   
Sbjct: 69  HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR 128

Query: 110 AEE 112
           A  
Sbjct: 129 AMG 131

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREP-KIVNGPQVLDKYVGESEA 101
           + +LL GPPGTGKT +A  I Q L ++ P   + G +V    + ++E 
Sbjct: 64  RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV 111

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 46  VEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK---IVNGPQVLDKYVGESEAN 102
           V     +  KG+   G PG GKT +A    + +  ++       +   ++ +        
Sbjct: 30  VHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR-------- 81

Query: 103 VRRLFADAEEEEK 115
           ++ L  + ++ + 
Sbjct: 82  LKHLMDEGKDTKF 94

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANV 103
           K IL+ GP G GKT +AR++ ++ NA   K+         YVG+   ++
Sbjct: 51  KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI 99

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 46  VEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK---IVNGPQVLDKYVGESEAN 102
           VEQ      KG+ LYG  G GK+ +   +   L+ ++     +++ P             
Sbjct: 144 VEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-------- 195

Query: 103 VRRLFADAEEEEK 115
           V+   ++   +E+
Sbjct: 196 VKNAISNGSVKEE 208

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAR 81
          ++L+GPPGTGKT +A  I +  NA 
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANAD 77

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 52  QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK--IVNGPQVLDKYVGESEANVRRLFAD 109
           + +KG+ L+G  G GKT +   I   L  R     IV  P++  +        ++    D
Sbjct: 52  KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE--------LKHSLQD 103

Query: 110 AEEEEK 115
               EK
Sbjct: 104 QTMNEK 109

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 57 ILLYGPPGTGKTLMARQIGQML 78
           L  G  GTGKT +++ I   +
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEI 69

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLNAREPK 84
          I +YG  GTGKT + + +   L+ +   
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLG 75

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 57 ILLYGPPGTGKTLMARQIGQML 78
            L G PGTGKT+  R++ ++ 
Sbjct: 47 ATLLGRPGTGKTVTLRKLWELY 68

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 57 ILLYGPPGTGKTLMARQIGQML 78
          + L GPPG  K+L+AR++    
Sbjct: 44 VFLLGPPGIAKSLIARRLKFAF 65

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 5/46 (10%)

Query: 44 EVVEQLGCQHVKG-----ILLYGPPGTGKTLMARQIGQMLNAREPK 84
             E+L   +  G     +L+   PG G   +   + + L  ++P+
Sbjct: 9  PDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQ 54

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 57 ILLYGPPGTGKTLMARQIGQMLN 79
          ILL GP G+GKTLMA+ + + L+
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLD 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.94
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.93
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.93
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.93
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.93
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.93
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.86
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.84
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.82
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.77
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.74
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.72
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.72
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.68
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.68
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.67
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.67
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.65
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.65
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.63
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.62
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.62
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.6
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.6
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.59
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.59
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.58
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.58
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.46
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.44
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.41
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.34
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.13
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.12
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.96
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.93
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.91
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.91
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.89
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	98.86
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.83
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.81
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.8
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.77
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.68
3co5_A	143	Putative two-component system transcriptional RES	98.67
3pvs_A	447	Replication-associated recombination protein A; ma	98.67
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.66
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.66
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.65
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.64
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.57
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.56
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.52
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.51
2r44_A	331	Uncharacterized protein; putative ATPase, structur	98.48
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.47
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	98.46
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.45
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.44
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.43
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.42
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.41
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.37
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.36
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.36
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.35
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.35
3bos_A	242	Putative DNA replication factor; P-loop containing	98.34
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.34
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.33
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.32
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.32
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.31
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.31
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.31
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.31
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.3
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.3
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.3
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.29
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.29
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.28
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.28
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.27
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.27
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.26
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.26
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.25
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.25
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.24
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.24
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.24
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.24
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.23
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.23
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.22
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.22
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.22
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.22
1g6h_A	257	High-affinity branched-chain amino acid transport	98.22
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.22
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	98.21
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.21
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.2
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.2
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.2
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.2
1via_A	175	Shikimate kinase; structural genomics, transferase	98.2
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.2
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.19
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.19
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.19
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.19
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.18
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.18
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.18
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.18
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.18
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.18
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.17
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.17
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.17
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.17
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.16
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.16
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.16
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.16
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.15
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.15
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.15
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.15
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.15
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.15
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.15
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.14
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.14
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.14
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.14
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.14
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.13
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.12
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.12
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.11
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.11
2qgz_A	308	Helicase loader, putative primosome component; str	98.11
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.11
2og2_A	359	Putative signal recognition particle receptor; nuc	98.11
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.1
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.1
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.1
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.09
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.09
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.09
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.09
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.09
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.08
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.08
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.08
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.08
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.08
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.08
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.07
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.07
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.07
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.07
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.07
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.07
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.07
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.07
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.06
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.06
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.05
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.05
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.05
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.05
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.04
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.04
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.03
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.03
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.03
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.03
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.03
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.03
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.02
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.02
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.02
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.01
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.01
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.01
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.01
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.0
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.0
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.0
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.0
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.0
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.99
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.99
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.99
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.98
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.98
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.98
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.97
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	97.97
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.96
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.96
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.96
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.95
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.95
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.95
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.94
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.94
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.94
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.93
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.93
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.92
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.91
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.91
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.9
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.9
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.9
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.89
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.89
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.89
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.89
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.88
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.87
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.86
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.86
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.85
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.84
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.84
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.84
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.83
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.83
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.83
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.83
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.83
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.82
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.82
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.81
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.8
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.79
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.78
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.78
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.78
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.77
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.76
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.76
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.75
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.75
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.75
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.75
2fna_A	357	Conserved hypothetical protein; structural genomic	97.75
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.72
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.71
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.71
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.7
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.7
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.7
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.69
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.68
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.68
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.65
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.65
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.62
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.62
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.62
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.62
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.62
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.61
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.6
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.6
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.59
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.58
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.58
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.57
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.55
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.53
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.51
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.51
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.5
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.49
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.49
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.48
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.48
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.47
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.47
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.47
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.46
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.46
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.45
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.43
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.43
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.42
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.42
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.41
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.41
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.4
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.4
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.38
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.38
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.38
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.38
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.37
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.36
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.36
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.36
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.35
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.35
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.35
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.33
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.33
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.32
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.31
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.29
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.28
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.28
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.27
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.27
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.27
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	97.27
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.26
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.25
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.25
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.23
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.21
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.2
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.2
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.19
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.18
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.17
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.16
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.14
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.14
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.13
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.13
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.12
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.12
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.11
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.11
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.09
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.09
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.09
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.09
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.08
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.08
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.06
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.05
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.03
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.02
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.01
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.01
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.0
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.0
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.97
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.96
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.96
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.96
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.96
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.96
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.94
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.94
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.94
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.92
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.91
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.9
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.9
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.89
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.89
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.89
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.88
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.87
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.87
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.86
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.85
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.85
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.85
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.85
3io5_A	333	Recombination and repair protein; storage dimer, i	96.84
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.84
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.83
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.83
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.83
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.83
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.83
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.81
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.81
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.81
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.8
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.8
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.8
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.8
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.79
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.79
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.79
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.79
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.78
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.78
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.76
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.76
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.76
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.76
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.76
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.76
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.75
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.75
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.74
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.74
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.72
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.72
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.72
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.71
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.71
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.7
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.7
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.7
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.7
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.69
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.69
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.69
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	96.69
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.69
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.68
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.67
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.67
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.67
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.66
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.66
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.66
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.66
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.66
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.65
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.64
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.64
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.63
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.63
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.63
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.63
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.63
3ice_A	422	Transcription termination factor RHO; transcriptio	96.62
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.61
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.61
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.6
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.6
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.6
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.59
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.59
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.58
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.58
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.57
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.57
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.57
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.56
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.56
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.56
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.54
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.54
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.53
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.53
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.52
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.51
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.51
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.51
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.5
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.47
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.46
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.45
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.45
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.42
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.41
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	96.41
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.41
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.41
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.4
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.38
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.38
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.38
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	96.37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.37
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.37
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.36
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.36
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.35

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3e-27  Score=175.26  Aligned_cols=104  Identities=38%  Similarity=0.691  Sum_probs=96.8

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||+|++++++++ ++.+.+|+.+|++|+++|+++++|+||+||||||||++|+++|++++.+++. ++++
T Consensus       141 ~~p~v~~~--dIgGl~~~k~~l-~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~-v~~s  216 (405)
T 4b4t_J          141 KVPDSTYD--MVGGLTKQIKEI-KEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR-VSGA  216 (405)
T ss_dssp             CSCSCCGG--GSCSCHHHHHHH-HHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred             CCCCCCHH--HhCCHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE-EEhH
Confidence            34677777  699999999998 9999999999999999999999999999999999999999999999999766 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|++++.++++|+.|++++|.+
T Consensus       217 ~l~sk~vGese~~vr~lF~~Ar~~aP~I  244 (405)
T 4b4t_J          217 ELVQKYIGEGSRMVRELFVMAREHAPSI  244 (405)
T ss_dssp             GGSCSSTTHHHHHHHHHHHHHHHTCSEE
T ss_pred             HhhccccchHHHHHHHHHHHHHHhCCce
Confidence            9999999999999999999999988754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.5e-26  Score=171.22  Aligned_cols=104  Identities=32%  Similarity=0.634  Sum_probs=97.1

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||+|++++++++ ++.+.+++.+++.|+.+|+++++|+|||||||||||++|+++|++++.+++. ++.+
T Consensus       175 ~~p~v~~~--DIgGld~~k~~L-~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~-v~~s  250 (437)
T 4b4t_I          175 KSPTESYS--DIGGLESQIQEI-KESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR-IVGS  250 (437)
T ss_dssp             SSCCCCGG--GTCSCHHHHHHH-HHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE-EESG
T ss_pred             cCCCCcce--ecCcHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE-EEHH
Confidence            45778887  599999999998 9999999999999999999999999999999999999999999999999766 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|++++.++.+|+.|++++|.+
T Consensus       251 ~l~sk~vGesek~ir~lF~~Ar~~aP~I  278 (437)
T 4b4t_I          251 ELIQKYLGDGPRLCRQIFKVAGENAPSI  278 (437)
T ss_dssp             GGCCSSSSHHHHHHHHHHHHHHHTCSEE
T ss_pred             HhhhccCchHHHHHHHHHHHHHhcCCcE
Confidence            9999999999999999999999988754

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5e-26  Score=170.33  Aligned_cols=104  Identities=36%  Similarity=0.596  Sum_probs=96.6

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||+|++++++++ ++.+.+|+.+|+.|.++|+++++|+|||||||||||++|+++|++++.+++. ++++
T Consensus       174 ~~p~~t~~--digGl~~~k~~l-~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~-v~~s  249 (434)
T 4b4t_M          174 EKPTETYS--DVGGLDKQIEEL-VEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK-LAAP  249 (434)
T ss_dssp             SSCSCCGG--GSCSCHHHHHHH-HHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred             CCCCCChH--hcCcHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE-Eehh
Confidence            45677777  699999999998 9999999999999999999999999999999999999999999999999766 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|++++.++.+|+.|+.++|.+
T Consensus       250 ~l~~~~vGese~~ir~lF~~A~~~aP~I  277 (434)
T 4b4t_M          250 QLVQMYIGEGAKLVRDAFALAKEKAPTI  277 (434)
T ss_dssp             GGCSSCSSHHHHHHHHHHHHHHHHCSEE
T ss_pred             hhhhcccchHHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999999998754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.9e-26  Score=170.49  Aligned_cols=104  Identities=37%  Similarity=0.664  Sum_probs=96.9

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||+|++++++++ ++.+.+|+.+|++|..+|+++++|+|||||||||||++|+++|++++.+++. ++++
T Consensus       174 ~~p~v~~~--digGl~~~k~~l-~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~-v~~s  249 (437)
T 4b4t_L          174 EQGEITFD--GIGGLTEQIREL-REVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF-SPAS  249 (437)
T ss_dssp             ESCSSCSG--GGCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred             cCCCCChh--HhCChHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE-Eehh
Confidence            46777787  599999999998 9999999999999999999999999999999999999999999999999765 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|++++.++.+|..|+.++|.+
T Consensus       250 ~l~sk~~Gese~~ir~~F~~A~~~~P~I  277 (437)
T 4b4t_L          250 GIVDKYIGESARIIREMFAYAKEHEPCI  277 (437)
T ss_dssp             GTCCSSSSHHHHHHHHHHHHHHHSCSEE
T ss_pred             hhccccchHHHHHHHHHHHHHHhcCCce
Confidence            9999999999999999999999987754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=6.1e-26  Score=169.66  Aligned_cols=104  Identities=35%  Similarity=0.638  Sum_probs=96.4

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||+|++++++++ ++.+..++.+++.|..+|+++++|+|||||||||||++|+++|++++.+++. ++.+
T Consensus       165 ~~p~v~~~--digGl~~~k~~l-~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~-v~~~  240 (428)
T 4b4t_K          165 EKPDVTYA--DVGGLDMQKQEI-REAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR-VNGS  240 (428)
T ss_dssp             SSCSCCGG--GSCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred             CCCCCCHH--HhccHHHHHHHH-HHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE-Eecc
Confidence            45667777  699999999998 9999999999999999999999999999999999999999999999999766 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|++++.++.+|+.|++++|.+
T Consensus       241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~I  268 (428)
T 4b4t_K          241 EFVHKYLGEGPRMVRDVFRLARENAPSI  268 (428)
T ss_dssp             GTCCSSCSHHHHHHHHHHHHHHHTCSEE
T ss_pred             hhhccccchhHHHHHHHHHHHHHcCCCe
Confidence            9999999999999999999999988754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4.9e-26  Score=170.90  Aligned_cols=104  Identities=37%  Similarity=0.637  Sum_probs=96.7

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|++.|+  ||+|++++++++ ++.+.+++.+++.|..+|+++++|+||+||||||||++|+++|++++.+++. ++.+
T Consensus       202 e~P~vt~~--DIgGl~~~k~~L-~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~-vs~s  277 (467)
T 4b4t_H          202 EKPDVTYS--DVGGCKDQIEKL-REVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR-VIGS  277 (467)
T ss_dssp             SSCSCCCS--SCTTCHHHHHHH-HHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE-EEGG
T ss_pred             CCCCCCHH--HhccHHHHHHHH-HHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE-EEhH
Confidence            45777777  699999999998 9999999999999999999999999999999999999999999999999766 7899


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.++|+|++++.++.+|+.|+.++|.+
T Consensus       278 ~L~sk~vGesek~ir~lF~~Ar~~aP~I  305 (467)
T 4b4t_H          278 ELVQKYVGEGARMVRELFEMARTKKACI  305 (467)
T ss_dssp             GGCCCSSSHHHHHHHHHHHHHHHTCSEE
T ss_pred             HhhcccCCHHHHHHHHHHHHHHhcCCce
Confidence            9999999999999999999999988753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.86  E-value=3.5e-23  Score=164.16  Aligned_cols=103  Identities=36%  Similarity=0.662  Sum_probs=94.3

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|.+.|+  ||+|++++++++ ++.+.+++.+|++|..+++.+++|+||+||||||||++|+++|++++.+++. +++.+
T Consensus       198 ~~~v~~~--dIgGl~~~~~~l-~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~-v~~~~  273 (806)
T 3cf2_A          198 LNEVGYD--DIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-INGPE  273 (806)
T ss_dssp             SSSCCGG--GCCSCCTTHHHH-HHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE-EEHHH
T ss_pred             CCCCChh--hhcCHHHHHHHH-HHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE-EEhHH
Confidence            3456666  699999999998 9999999999999999999999999999999999999999999999998665 78999


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      +.++|.|+++++++.+|+.|+.++|.+
T Consensus       274 l~sk~~gese~~lr~lF~~A~~~~PsI  300 (806)
T 3cf2_A          274 IMSKLAGESESNLRKAFEEAEKNAPAI  300 (806)
T ss_dssp             HHSSCTTHHHHHHHHHHHHHTTSCSEE
T ss_pred             hhcccchHHHHHHHHHHHHHHHcCCeE
Confidence            999999999999999999999887653

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.84  E-value=4.9e-22  Score=157.65  Aligned_cols=103  Identities=36%  Similarity=0.628  Sum_probs=94.5

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|.+.|+  +|+|++++++++ .+.+.+++.+++.|.++++.+++|+||+||||||||++|+++|++++.+++. ++.++
T Consensus       471 ~p~v~w~--diggl~~~k~~l-~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~-v~~~~  546 (806)
T 3cf2_A          471 VPQVTWE--DIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPE  546 (806)
T ss_dssp             CCCCCST--TCCSCHHHHHHH-TTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE-CCHHH
T ss_pred             CCCCCHH--HhCCHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEE-eccch
Confidence            4555555  699999999998 9999999999999999999999999999999999999999999999999766 78999


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++++|+|+++++++++|+.|++.+|.+
T Consensus       547 l~s~~vGese~~vr~lF~~Ar~~~P~I  573 (806)
T 3cf2_A          547 LLTMWFGESEANVREIFDKARQAAPCV  573 (806)
T ss_dssp             HHTTTCSSCHHHHHHHHHHHHTTCSEE
T ss_pred             hhccccchHHHHHHHHHHHHHHcCCce
Confidence            999999999999999999999987754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.82  E-value=9.6e-21  Score=134.43  Aligned_cols=104  Identities=35%  Similarity=0.569  Sum_probs=85.4

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|.+.|+  ||+|++++++++ ++.+..++.+++.++.+++..++|++|+||||||||++++++|+.++..++. +++.
T Consensus         3 ~~~~~~~~--di~g~~~~~~~l-~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~-i~g~   78 (274)
T 2x8a_A            3 TVPNVTWA--DIGALEDIREEL-TMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFIS-VKGP   78 (274)
T ss_dssp             -----------CCHHHHHHHHH-HHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE-EETT
T ss_pred             CCCCCCHH--HhCCHHHHHHHH-HHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEE-EEcH
Confidence            34666666  699999999988 8888999999999999999999999999999999999999999999886544 6788


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      ++.+.+.++.++.++.+|+.|+...+.+
T Consensus        79 ~l~~~~~~~~~~~i~~vf~~a~~~~p~i  106 (274)
T 2x8a_A           79 ELLNMYVGESERAVRQVFQRAKNSAPCV  106 (274)
T ss_dssp             TTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence            8888889999999999999997765543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.77  E-value=2.7e-19  Score=128.20  Aligned_cols=102  Identities=35%  Similarity=0.622  Sum_probs=90.3

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|.+.|+  +|+|++++++++ ++.+..++.+++.+..+++.++.+++|+||||||||++|+++|+.++.+++. +++.
T Consensus         8 ~~~~~~~~--di~G~~~~~~~l-~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~-v~~~   83 (301)
T 3cf0_A            8 EVPQVTWE--DIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGP   83 (301)
T ss_dssp             ECCCCCGG--GSCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE-ECHH
T ss_pred             cCCCCCHH--HhCCHHHHHHHH-HHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEE-EEhH
Confidence            34666666  599999999988 8889899999999999999999999999999999999999999999877655 6788


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ++.+.++|+.++.++.+|+.|+...+
T Consensus        84 ~l~~~~~g~~~~~~~~~f~~a~~~~p  109 (301)
T 3cf0_A           84 ELLTMWFGESEANVREIFDKARQAAP  109 (301)
T ss_dssp             HHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred             HHHhhhcCchHHHHHHHHHHHHhcCC
Confidence            88889999999999999999987654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.74  E-value=1.9e-18  Score=125.03  Aligned_cols=101  Identities=29%  Similarity=0.510  Sum_probs=85.7

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh-cCCCCeeecC
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML-NAREPKIVNG   88 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~-~~~~~~~~~~   88 (121)
                      ..|.+.|+  ||+|++++++.+ ++.+.+++.+++++.. +..++++++|+||||||||++|+++|+++ +.+++. ++.
T Consensus         5 ~~~~~~~~--di~G~~~~k~~l-~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~-i~~   79 (322)
T 1xwi_A            5 ERPNVKWS--DVAGLEGAKEAL-KEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS-ISS   79 (322)
T ss_dssp             ECCCCCGG--GSCSCHHHHHHH-HHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE-EEC
T ss_pred             cCCCCCHH--HhcCHHHHHHHH-HHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE-EEh
Confidence            45666777  599999999988 8888899988888874 35677899999999999999999999998 555444 788


Q ss_pred             cccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          89 PQVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        89 ~~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      +++.+.|.++.++.++.+|+.|+...+
T Consensus        80 ~~l~~~~~g~~~~~~~~lf~~a~~~~~  106 (322)
T 1xwi_A           80 SDLVSKWLGESEKLVKNLFQLARENKP  106 (322)
T ss_dssp             CSSCCSSCCSCHHHHHHHHHHHHHTSS
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHhcCC
Confidence            889999999999999999999987654

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.72  E-value=9.4e-18  Score=118.50  Aligned_cols=102  Identities=38%  Similarity=0.686  Sum_probs=90.0

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|+..|+  +++|++++++++ .+.+..++..++.++.+++..+.+++|+||||||||++++++|+.++.++.. +...
T Consensus        10 ~~~~~~~~--~i~G~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~-v~~~   85 (285)
T 3h4m_A           10 ERPNVRYE--DIGGLEKQMQEI-REVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIR-VVGS   85 (285)
T ss_dssp             SSCCCCGG--GSCSCHHHHHHH-HHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE-EEGG
T ss_pred             CCCCCCHH--HhcCHHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE-EehH
Confidence            45566666  599999999998 8888888899999999999999999999999999999999999999888655 6778


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ++...+.++.+..++.+|..++...+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (285)
T 3h4m_A           86 ELVKKFIGEGASLVKDIFKLAKEKAP  111 (285)
T ss_dssp             GGCCCSTTHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHhccchHHHHHHHHHHHHHHcCC
Confidence            88888999999999999999887654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.72  E-value=4.5e-18  Score=122.76  Aligned_cols=101  Identities=33%  Similarity=0.551  Sum_probs=86.9

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ..|.+.|+  +|+|++.+++++ ++.+..++..++.+.. +..++.+++|+||||||||++|+++|++++.+++. +++.
T Consensus        11 ~~~~~~~~--di~G~~~~~~~l-~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~-v~~~   85 (322)
T 3eie_A           11 EKPNVKWE--DVAGLEGAKEAL-KEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSS   85 (322)
T ss_dssp             ECCCCCGG--GSCSCHHHHHHH-HHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE-EEHH
T ss_pred             cCCCCCHH--HhcChHHHHHHH-HHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE-EchH
Confidence            45666676  599999999998 8888888888888776 44667899999999999999999999999988665 7788


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ++.+.|.++.+..++.+|+.|+...+
T Consensus        86 ~l~~~~~g~~~~~~~~~f~~a~~~~~  111 (322)
T 3eie_A           86 DLVSKWMGESEKLVKQLFAMARENKP  111 (322)
T ss_dssp             HHHTTTGGGHHHHHHHHHHHHHHTSS
T ss_pred             HHhhcccchHHHHHHHHHHHHHhcCC
Confidence            88899999999999999999987654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.68  E-value=7.7e-17  Score=112.25  Aligned_cols=97  Identities=30%  Similarity=0.490  Sum_probs=75.9

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      ..+|+  +++|++++++++ ++.+.. +..++.+..++...+.+++|+||||||||++|+++|+.++.+++. ++..++.
T Consensus         2 ~~~~~--~i~G~~~~~~~l-~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~-~~~~~~~   76 (262)
T 2qz4_A            2 GVSFK--DVAGMHEAKLEV-REFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLA-MAGAEFV   76 (262)
T ss_dssp             CCCTT--SSCSCHHHHHHH-HHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE-EETTTTS
T ss_pred             CCCHH--HhCCHHHHHHHH-HHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-echHHHH
Confidence            45555  599999999988 555543 556778888898999999999999999999999999999988655 6777888


Q ss_pred             hhhhchhHHHHHHHHHHHHHHH
Q psy3632          93 DKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        93 ~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      ..+.+..+..++.+|+.|+...
T Consensus        77 ~~~~~~~~~~~~~~~~~a~~~~   98 (262)
T 2qz4_A           77 EVIGGLGAARVRSLFKEARARA   98 (262)
T ss_dssp             SSSTTHHHHHHHHHHHHHHHTC
T ss_pred             hhccChhHHHHHHHHHHHHhcC
Confidence            8888888999999999988654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.68  E-value=1.9e-17  Score=121.11  Aligned_cols=100  Identities=33%  Similarity=0.566  Sum_probs=81.5

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .+...|+  +|+|++.+++.+ ++.+.+++..++.+.. +..++.+++|+||||||||++|+++|+.++.+++. ++..+
T Consensus        45 ~~~~~~~--di~G~~~~~~~l-~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~-v~~~~  119 (355)
T 2qp9_X           45 KPNVKWE--DVAGLEGAKEAL-KEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS-VSSSD  119 (355)
T ss_dssp             --CCCGG--GSCCGGGHHHHH-HHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE-EEHHH
T ss_pred             CCCCCHH--HhCCHHHHHHHH-HHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE-eeHHH
Confidence            3455666  699999999988 8888888888888876 55778899999999999999999999999988655 67788


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      +...|.++.+..++.+|+.|+...+
T Consensus       120 l~~~~~g~~~~~~~~~f~~a~~~~~  144 (355)
T 2qp9_X          120 LVSKWMGESEKLVKQLFAMARENKP  144 (355)
T ss_dssp             HHSCC---CHHHHHHHHHHHHHTSS
T ss_pred             HhhhhcchHHHHHHHHHHHHHHcCC
Confidence            8888999999999999999987544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.67  E-value=5.3e-17  Score=113.40  Aligned_cols=99  Identities=27%  Similarity=0.491  Sum_probs=77.3

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +...|+  +|+|++.+++++ .+.+.. +.+++.+..++...+.+++|+||||||||++++++|+.++.+++. +++.++
T Consensus         7 ~~~~~~--~i~G~~~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~-i~~~~~   81 (257)
T 1lv7_A            7 IKTTFA--DVAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT-ISGSDF   81 (257)
T ss_dssp             SCCCGG--GSCSCHHHHHHT-HHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE-ECSCSS
T ss_pred             CCCCHH--HhcCcHHHHHHH-HHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEE-EeHHHH
Confidence            445555  699999999988 555543 556777888888889999999999999999999999999887654 778888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHH
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ...+.++.++.++.+|+.|+...+
T Consensus        82 ~~~~~~~~~~~~~~~~~~a~~~~~  105 (257)
T 1lv7_A           82 VEMFVGVGASRVRDMFEQAKKAAP  105 (257)
T ss_dssp             TTSCCCCCHHHHHHHHHHHHTTCS
T ss_pred             HHHhhhhhHHHHHHHHHHHHHcCC
Confidence            888888899999999999876543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.67  E-value=1.5e-16  Score=120.50  Aligned_cols=99  Identities=32%  Similarity=0.586  Sum_probs=84.7

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +...|+  ||+|++.+++++ ++.+. .+..++.+.+++...+++++|+||||||||++++++|++++.+++. +++.++
T Consensus        11 ~~~~f~--di~G~~~~~~~l-~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~-is~~~~   85 (476)
T 2ce7_A           11 KRVTFK--DVGGAEEAIEEL-KEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFH-ISGSDF   85 (476)
T ss_dssp             CCCCGG--GCCSCHHHHHHH-HHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGGT
T ss_pred             CCCCHH--HhCCcHHHHHHH-HHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeee-CCHHHH
Confidence            345555  699999999998 55554 4567888999999999999999999999999999999999988665 678888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHH
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ...+.|..+..++.+|+.|+..+|
T Consensus        86 ~~~~~g~~~~~~r~lf~~A~~~~p  109 (476)
T 2ce7_A           86 VELFVGVGAARVRDLFAQAKAHAP  109 (476)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCC
Confidence            888999999999999999987654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.65  E-value=1.1e-16  Score=121.49  Aligned_cols=94  Identities=39%  Similarity=0.700  Sum_probs=86.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES   99 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~   99 (121)
                      +|+|++.+++++ ++.+..++.+++++..++..++.+++|+||||||||++|++++..++.+++. +++.++.+.+.++.
T Consensus       205 ~i~G~~~~~~~l-~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~-vn~~~l~~~~~g~~  282 (489)
T 3hu3_A          205 DIGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-INGPEIMSKLAGES  282 (489)
T ss_dssp             GCCSCHHHHHHH-HHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE-EEHHHHHTSCTTHH
T ss_pred             HcCCHHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE-EEchHhhhhhcchh
Confidence            699999999998 8889999999999999999999999999999999999999999999887655 78888889999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy3632         100 EANVRRLFADAEEEEK  115 (121)
Q Consensus       100 ~~~i~~~f~~a~~~~~  115 (121)
                      +..++.+|+.|+...+
T Consensus       283 ~~~~~~~f~~A~~~~p  298 (489)
T 3hu3_A          283 ESNLRKAFEEAEKNAP  298 (489)
T ss_dssp             HHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999987643

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.65  E-value=5.1e-17  Score=121.98  Aligned_cols=101  Identities=29%  Similarity=0.510  Sum_probs=75.1

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh-cCCCCeeecC
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML-NAREPKIVNG   88 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~-~~~~~~~~~~   88 (121)
                      ..|.+.|+  +|+|++.+++.+ .+.+..++..++++.. +..++++++|+||||||||++|+++|..+ +.+++. ++.
T Consensus       127 ~~~~~~~~--di~G~~~~k~~l-~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~-v~~  201 (444)
T 2zan_A          127 ERPNVKWS--DVAGLEGAKEAL-KEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS-ISS  201 (444)
T ss_dssp             CCCCCCGG--GSCSCHHHHHHH-HHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE-ECC
T ss_pred             cCCCCCHH--HhcCHHHHHHHH-HHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE-EeH
Confidence            34566666  599999999988 7888888877777764 34567899999999999999999999998 655444 788


Q ss_pred             cccchhhhchhHHHHHHHHHHHHHHHH
Q psy3632          89 PQVLDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        89 ~~~~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      +++.+.|.|+.+..++.+|+.|+...+
T Consensus       202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~  228 (444)
T 2zan_A          202 SDLVSKWLGESEKLVKNLFQLARENKP  228 (444)
T ss_dssp             C---------CCCTHHHHHHHHHHSCS
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHcCC
Confidence            889899999999999999999987544

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.62  E-value=4.6e-16  Score=110.47  Aligned_cols=99  Identities=33%  Similarity=0.540  Sum_probs=81.7

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      ++..|+  +++|.+.+++.+ .+.+..+..+++++..++ .++.+++|+||||||||++|+++|+.++.+++. +++.++
T Consensus        16 ~~~~~~--~i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~-i~~~~l   90 (297)
T 3b9p_A           16 AKVEWT--DIAGQDVAKQAL-QEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLN-ISAASL   90 (297)
T ss_dssp             SCCCGG--GSCCCHHHHHHH-HHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE-EESTTT
T ss_pred             CCCCHH--HhCChHHHHHHH-HHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE-eeHHHH
Confidence            455565  699999999988 777877777777776655 457789999999999999999999999877555 678888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHH
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ...+.++.+..++.+|..++...+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~  114 (297)
T 3b9p_A           91 TSKYVGDGEKLVRALFAVARHMQP  114 (297)
T ss_dssp             SSSSCSCHHHHHHHHHHHHHHTCS
T ss_pred             hhcccchHHHHHHHHHHHHHHcCC
Confidence            888899999999999999886543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.60  E-value=8.8e-16  Score=107.00  Aligned_cols=98  Identities=28%  Similarity=0.524  Sum_probs=77.7

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|...|+  +++|+++.+.++ +... ..+..+..+..+++..+.|++|+||||||||++++++++.++..++. +++.+
T Consensus        10 ~~~~~~~--~i~g~~~~~~~l-~~l~-~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~-~~~~~   84 (254)
T 1ixz_A           10 APKVTFK--DVAGAEEAKEEL-KEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSD   84 (254)
T ss_dssp             CCSCCGG--GCCSCHHHHHHH-HHHH-HHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHH
T ss_pred             CCCCCHH--HhCCcHHHHHHH-HHHH-HHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE-eeHHH
Confidence            4555666  699999998887 4433 33456788999999999999999999999999999999999866443 55666


Q ss_pred             cchhhhchhHHHHHHHHHHHHHH
Q psy3632          91 VLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      +...+.++..+.++.+|+.++..
T Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~  107 (254)
T 1ixz_A           85 FVEMFVGVGAARVRDLFETAKRH  107 (254)
T ss_dssp             HHHSCTTHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhc
Confidence            66667777888899999998643

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.60  E-value=3.7e-16  Score=118.88  Aligned_cols=99  Identities=27%  Similarity=0.513  Sum_probs=81.6

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +...|+  +++|++.++.++ ++.+. .+..+..+.+++++.+.|++|+||||||||++++++|+.++.+++. +++.++
T Consensus        26 ~~~~f~--dv~G~~~~k~~l-~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~-i~g~~~  100 (499)
T 2dhr_A           26 PKVTFK--DVAGAEEAKEEL-KEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDF  100 (499)
T ss_dssp             CCCCTT--SSCSCHHHHHHH-HHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE-EEGGGG
T ss_pred             CCCCHH--HcCCcHHHHHHH-HHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-EehhHH
Confidence            455555  699999999988 54443 4567788889999999999999999999999999999999877655 678888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHH
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ...+.+.....++.+|+.|+...+
T Consensus       101 ~~~~~g~~~~~v~~lfq~a~~~~p  124 (499)
T 2dhr_A          101 VEMFVGVGAARVRDLFETAKRHAP  124 (499)
T ss_dssp             TSSCTTHHHHHHHHHTTTSSSSSS
T ss_pred             HHhhhhhHHHHHHHHHHHHHhcCC
Confidence            888889999999999998865433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.59  E-value=1.2e-15  Score=111.56  Aligned_cols=98  Identities=34%  Similarity=0.563  Sum_probs=81.8

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +...|+  +|+|++.+++++ .+.+..++..++.+...+ .++.+++|+||||||||++|+++|..++.+++. ++..++
T Consensus        79 ~~~~~~--~i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~-i~~~~l  153 (357)
T 3d8b_A           79 PPVNWE--DIAGVEFAKATI-KEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFS-ISASSL  153 (357)
T ss_dssp             CCCCGG--GSCSCHHHHHHH-HHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE-EEGGGG
T ss_pred             CCCCHH--HhCChHHHHHHH-HHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEE-EehHHh
Confidence            445555  699999999988 777877777777766654 567889999999999999999999999887655 778888


Q ss_pred             chhhhchhHHHHHHHHHHHHHHH
Q psy3632          92 LDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      ...+.++.+..++.+|..|+...
T Consensus       154 ~~~~~g~~~~~~~~~~~~a~~~~  176 (357)
T 3d8b_A          154 TSKWVGEGEKMVRALFAVARCQQ  176 (357)
T ss_dssp             CCSSTTHHHHHHHHHHHHHHHTC
T ss_pred             hccccchHHHHHHHHHHHHHhcC
Confidence            88999999999999999988654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.59  E-value=1.8e-16  Score=111.06  Aligned_cols=99  Identities=29%  Similarity=0.517  Sum_probs=81.3

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .+...|+  ++.|.+.+++++ .+.+. .+..++.+.+++...+.+++|+||||||||++|+++|..++.+++. ++...
T Consensus         5 ~~~~~~~--~i~G~~~~~~~l-~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~-v~~~~   79 (268)
T 2r62_A            5 KPNVRFK--DMAGNEEAKEEV-VEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS-MGGSS   79 (268)
T ss_dssp             CCCCCST--TSSSCTTTHHHH-HHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC-CCSCT
T ss_pred             CCCCCHH--HhCCcHHHHHHH-HHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE-echHH
Confidence            3455565  599999999988 55554 3667889999999999999999999999999999999999988766 67777


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHH
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      +...+.+..+..++.+|+.|+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~a~~~~  103 (268)
T 2r62_A           80 FIEMFVGLGASRVRDLFETAKKQA  103 (268)
T ss_dssp             TTTSCSSSCSSSSSTTHHHHHHSC
T ss_pred             HHHhhcchHHHHHHHHHHHHHhcC
Confidence            777777777777888999887643

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.58  E-value=3.5e-15  Score=105.42  Aligned_cols=98  Identities=28%  Similarity=0.521  Sum_probs=77.4

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +...|+  +++|++++++++ +... ..+..+..+..+++..+.|++|+|||||||||+++++++.+...++. +++.++
T Consensus        35 ~~~~~~--~i~g~~~~~~~l-~~l~-~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~-~~~~~~  109 (278)
T 1iy2_A           35 PKVTFK--DVAGAEEAKEEL-KEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSDF  109 (278)
T ss_dssp             CCCCGG--GSSSCHHHHHHH-HHHH-HHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHHH
T ss_pred             CCCCHH--HhCChHHHHHHH-HHHH-HHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEE-ecHHHH
Confidence            455555  699999999888 4433 34456788899999999999999999999999999999999865443 556666


Q ss_pred             chhhhchhHHHHHHHHHHHHHHH
Q psy3632          92 LDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      ...+.++....++.+|+.++...
T Consensus       110 ~~~~~~~~~~~i~~~~~~~~~~~  132 (278)
T 1iy2_A          110 VEMFVGVGAARVRDLFETAKRHA  132 (278)
T ss_dssp             HHSTTTHHHHHHHHHHHHHHTSC
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcC
Confidence            66677777888999999987543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.58  E-value=2.3e-15  Score=111.00  Aligned_cols=98  Identities=35%  Similarity=0.564  Sum_probs=75.8

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      ...|+  +|.|.+.+++.+ .+.+..+..+++++..++ .++.+++|+||||||||++|+++|..++.+++. +++.++.
T Consensus       111 ~~~~~--~iiG~~~~~~~l-~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~-v~~~~l~  185 (389)
T 3vfd_A          111 AVKFD--DIAGQDLAKQAL-QEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFN-ISAASLT  185 (389)
T ss_dssp             CCCGG--GSCSCHHHHHHH-HHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE-ECSCCC-
T ss_pred             CCChH--HhCCHHHHHHHH-HHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEE-eeHHHhh
Confidence            34455  699999999988 777777777777777666 456789999999999999999999999988655 7888999


Q ss_pred             hhhhchhHHHHHHHHHHHHHHHH
Q psy3632          93 DKYVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        93 ~~~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      ..+.++.+..++.+|+.|+...+
T Consensus       186 ~~~~g~~~~~~~~~~~~a~~~~~  208 (389)
T 3vfd_A          186 SKYVGEGEKLVRALFAVARELQP  208 (389)
T ss_dssp             ------CHHHHHHHHHHHHHSSS
T ss_pred             ccccchHHHHHHHHHHHHHhcCC
Confidence            99999999999999999987543

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.46  E-value=9.8e-14  Score=104.19  Aligned_cols=94  Identities=30%  Similarity=0.384  Sum_probs=70.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVG   97 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~   97 (121)
                      +|.|+++.++.+ ...+..++..+.++..+... ++.+++|+||||||||++++++|+.++.+++. ++...+.+ .|+|
T Consensus        16 ~IvGqe~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~-v~~~~~~~~g~vG   93 (444)
T 1g41_A           16 HIIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVG   93 (444)
T ss_dssp             TCCSCHHHHHHH-HHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEGGGGC----CC
T ss_pred             HhCCHHHHHHHH-HHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCcee-ecchhhcccceee
Confidence            589999999887 66665554444444433332 46789999999999999999999999998665 66667776 5888


Q ss_pred             h-hHHHHHHHHHHHHHHHH
Q psy3632          98 E-SEANVRRLFADAEEEEK  115 (121)
Q Consensus        98 ~-~~~~i~~~f~~a~~~~~  115 (121)
                      + .+..++.+|+.|+...+
T Consensus        94 ~d~e~~lr~lf~~a~~~~~  112 (444)
T 1g41_A           94 KEVDSIIRDLTDSAMKLVR  112 (444)
T ss_dssp             CCTHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcch
Confidence            5 79999999999976643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.44  E-value=2.3e-13  Score=102.31  Aligned_cols=87  Identities=25%  Similarity=0.273  Sum_probs=68.3

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc--CCCCeeecC
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN--AREPKIVNG   88 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~--~~~~~~~~~   88 (121)
                      .|...|+  ++.|.+..++.+ ...+...        ..+..++++++|+||||||||++|+++|+.++  .++.. +++
T Consensus        31 ~~~~~~~--~iiG~~~~~~~l-~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~-~~~   98 (456)
T 2c9o_A           31 LAKQAAS--GLVGQENAREAC-GVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCP-MVG   98 (456)
T ss_dssp             CBCSEET--TEESCHHHHHHH-HHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE-EEG
T ss_pred             Chhhchh--hccCHHHHHHHH-HHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE-EeH
Confidence            3444444  699999998877 4433211        23555678999999999999999999999998  55544 788


Q ss_pred             cccchhhhchhHHHHHHHHHHH
Q psy3632          89 PQVLDKYVGESEANVRRLFADA  110 (121)
Q Consensus        89 ~~~~~~~~~~~~~~i~~~f~~a  110 (121)
                      +++.+.+.++++. ++++|+.|
T Consensus        99 ~~~~~~~~~~~~~-~~~~f~~a  119 (456)
T 2c9o_A           99 SEVYSTEIKKTEV-LMENFRRA  119 (456)
T ss_dssp             GGGCCSSSCHHHH-HHHHHHHT
T ss_pred             HHHHHHhhhhhHH-HHHHHHHH
Confidence            8999999999987 99999987

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.41  E-value=2e-13  Score=97.39  Aligned_cols=64  Identities=14%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      .+.+++.+++|+||||||||++|+++|+.++.+++. ++.+++.+.|.|+++..++++|+.|.+.
T Consensus        31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~-v~~~~l~~~~~g~~~~~i~~~f~~a~~~   94 (293)
T 3t15_A           31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAAEI   94 (293)
T ss_dssp             TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE-EEHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE-EeHHHhhhccCchhHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999998765 7788889999999999999999999543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.34  E-value=1.8e-12  Score=92.20  Aligned_cols=88  Identities=24%  Similarity=0.368  Sum_probs=68.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCC---ccEEEEcCCCCcHHHHHHHHHHHhcC-------CCCeeecCc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHV---KGILLYGPPGTGKTLMARQIGQMLNA-------REPKIVNGP   89 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~---~~vll~Gp~G~GKT~l~~~la~~~~~-------~~~~~~~~~   89 (121)
                      ++.|++++++.+ .+.+.... .+..+.++|+...   .+++|+||||||||++|+++|+.+..       ++ ..++..
T Consensus        32 ~i~G~~~~~~~l-~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~  108 (309)
T 3syl_A           32 ELIGLKPVKDRI-RETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL-VSVTRD  108 (309)
T ss_dssp             HSSSCHHHHHHH-HHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE-EEECGG
T ss_pred             HccChHHHHHHH-HHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE-EEEcHH
Confidence            489999999988 55555443 3566666666553   35999999999999999999999844       32 336777


Q ss_pred             ccchhhhchhHHHHHHHHHHH
Q psy3632          90 QVLDKYVGESEANVRRLFADA  110 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a  110 (121)
                      ++.+.+.+.....++.+|+.+
T Consensus       109 ~l~~~~~g~~~~~~~~~~~~~  129 (309)
T 3syl_A          109 DLVGQYIGHTAPKTKEVLKRA  129 (309)
T ss_dssp             GTCCSSTTCHHHHHHHHHHHH
T ss_pred             HhhhhcccccHHHHHHHHHhc
Confidence            888888999988899999876

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.13  E-value=1.3e-10  Score=81.54  Aligned_cols=89  Identities=21%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES   99 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~   99 (121)
                      .+.|.+..+++++...-..    .+.+...+...+.+++|+||||||||++|+++|..++.+++.+.....+.....+..
T Consensus        34 ~~i~~~~~~~~i~~~~~~l----~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~  109 (272)
T 1d2n_A           34 GIIKWGDPVTRVLDDGELL----VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK  109 (272)
T ss_dssp             CCCCCSHHHHHHHHHHHHH----HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred             CCCCccHHHHHHHHHHHHH----HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence            3667777766663321100    123333345667889999999999999999999999888665433333332222334


Q ss_pred             HHHHHHHHHHHHH
Q psy3632         100 EANVRRLFADAEE  112 (121)
Q Consensus       100 ~~~i~~~f~~a~~  112 (121)
                      ...++.+|+.+..
T Consensus       110 ~~~~~~~~~~~~~  122 (272)
T 1d2n_A          110 CQAMKKIFDDAYK  122 (272)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            4668888887754

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.12  E-value=4.4e-11  Score=87.27  Aligned_cols=89  Identities=24%  Similarity=0.365  Sum_probs=58.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHH-hCC-CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQ-LGC-QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYV   96 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~-~~~-~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~   96 (121)
                      .|.|.+..++.+ ...+............ ... .++.+++|+||||||||++|+++|..++.+++. +++..+.. .|+
T Consensus        16 ~i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~-~~~~~l~~~~~~   93 (363)
T 3hws_A           16 YVIGQEQAKKVL-AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTM-ADATTLTEAGYV   93 (363)
T ss_dssp             HCCSCHHHHHHH-HHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHHHTTCHHH
T ss_pred             hccCHHHHHHHH-HHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE-echHHhcccccc
Confidence            378999988887 4444322111000000 011 246689999999999999999999999888665 55656553 477


Q ss_pred             chh-HHHHHHHHHHH
Q psy3632          97 GES-EANVRRLFADA  110 (121)
Q Consensus        97 ~~~-~~~i~~~f~~a  110 (121)
                      |.. ...++.+|+.+
T Consensus        94 g~~~~~~~~~~~~~~  108 (363)
T 3hws_A           94 GEDVENIIQKLLQKC  108 (363)
T ss_dssp             HHHHTHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHh
Confidence            776 56677787765

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.96  E-value=4.3e-10  Score=79.52  Aligned_cols=88  Identities=31%  Similarity=0.396  Sum_probs=55.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHh-CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQL-GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVG   97 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~-~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~   97 (121)
                      ++.|.+.+++.+ ...+...+....+...+ .-..+.+++|+||||||||++|++++..++.+++. +++..+.. .+.+
T Consensus        16 ~i~G~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~-i~~~~~~~~~~~~   93 (310)
T 1ofh_A           16 HIIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVG   93 (310)
T ss_dssp             TCCSCHHHHHHH-HHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGGGSSCCSGG
T ss_pred             hcCChHHHHHHH-HHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE-EcchhcccCCccC
Confidence            488999988887 44443321111110000 01245689999999999999999999999877554 55555544 4554


Q ss_pred             hh-HHHHHHHHHH
Q psy3632          98 ES-EANVRRLFAD  109 (121)
Q Consensus        98 ~~-~~~i~~~f~~  109 (121)
                      .. ...++.+|+.
T Consensus        94 ~~~~~~~~~~~~~  106 (310)
T 1ofh_A           94 KEVDSIIRDLTDS  106 (310)
T ss_dssp             GSTTHHHHHHHHT
T ss_pred             ccHHHHHHHHHHH
Confidence            33 3456666653

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.93  E-value=4.1e-09  Score=76.38  Aligned_cols=60  Identities=28%  Similarity=0.372  Sum_probs=41.6

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|...|+  ++.|.+..++.+ ....       +... .+..++.+++|+||||||||++|+++|..++..
T Consensus        38 ~p~~~~~--~ivG~~~~~~~l-~~l~-------~~~~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~   97 (368)
T 3uk6_A           38 EPRQASQ--GMVGQLAARRAA-GVVL-------EMIR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD   97 (368)
T ss_dssp             CBCSEET--TEESCHHHHHHH-HHHH-------HHHH-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred             CcCcchh--hccChHHHHHHH-HHHH-------HHHH-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            3444455  589999887765 2221       1111 133445789999999999999999999999753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.91  E-value=2.2e-09  Score=78.49  Aligned_cols=87  Identities=26%  Similarity=0.342  Sum_probs=50.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHH------------------HHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEV------------------VEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~------------------~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.|++.+++.+ ...+...+.....                  ... ...++.+++|+||||||||++|+++|..++.+
T Consensus        22 ~viGq~~ak~~l-~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~   99 (376)
T 1um8_A           22 YVIGQEQAKKVF-SVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIP   99 (376)
T ss_dssp             TCCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             HccCcHHHHHHH-HHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            478999988887 4444222111111                  001 12345679999999999999999999999877


Q ss_pred             CCeeecCcccc-hhhhchh-HHHHHHHHHH
Q psy3632          82 EPKIVNGPQVL-DKYVGES-EANVRRLFAD  109 (121)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~-~~~i~~~f~~  109 (121)
                      ++. ++...+. ..+.|+. +..+..+|+.
T Consensus       100 ~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~  128 (376)
T 1um8_A          100 IAI-SDATSLTEAGYVGEDVENILTRLLQA  128 (376)
T ss_dssp             EEE-EEGGGCC--------CTHHHHHHHHH
T ss_pred             EEE-ecchhhhhcCcCCccHHHHHHHHHhh
Confidence            654 4444443 3455543 3445555543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.91  E-value=5.9e-09  Score=68.17  Aligned_cols=79  Identities=23%  Similarity=0.357  Sum_probs=51.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC---------CCCeeecCcc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA---------REPKIVNGPQ   90 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~---------~~~~~~~~~~   90 (121)
                      ++.|.+++++++ ...+.             ...+.+++|+||+|+|||+++++++..+..         ..+..++...
T Consensus        23 ~~~g~~~~~~~l-~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (195)
T 1jbk_A           23 PVIGRDEEIRRT-IQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA   88 (195)
T ss_dssp             CCCSCHHHHHHH-HHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred             ccccchHHHHHH-HHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence            588999888877 32221             133567999999999999999999998732         1111233333


Q ss_pred             cc--hhhhchhHHHHHHHHHHHHH
Q psy3632          91 VL--DKYVGESEANVRRLFADAEE  112 (121)
Q Consensus        91 ~~--~~~~~~~~~~i~~~f~~a~~  112 (121)
                      +.  ..+.+.....++.+|+.+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~  112 (195)
T 1jbk_A           89 LVAGAKYRGEFEERLKGVLNDLAK  112 (195)
T ss_dssp             HHTTTCSHHHHHHHHHHHHHHHHH
T ss_pred             HhccCCccccHHHHHHHHHHHHhh
Confidence            33  23455666777788876543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.89  E-value=7.5e-10  Score=85.01  Aligned_cols=82  Identities=29%  Similarity=0.344  Sum_probs=48.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc------
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL------   92 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~------   92 (121)
                      ++.|+++.++.+ .+.+.        ...+... .+..++|+||||||||++++++|+.++.+++.+ +.....      
T Consensus        82 di~G~~~vk~~i-~~~~~--------l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i-~~~~~~~~~~~~  151 (543)
T 3m6a_A           82 EHHGLEKVKERI-LEYLA--------VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI-SLGGVRDESEIR  151 (543)
T ss_dssp             HCSSCHHHHHHH-HHHHH--------HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE-CCCC--------
T ss_pred             HhccHHHHHHHH-HHHHH--------HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE-Eecccchhhhhh
Confidence            578999888776 33322        1122222 355799999999999999999999998876664 222221      


Q ss_pred             ---hhhhchhHHHHHHHHHHHH
Q psy3632          93 ---DKYVGESEANVRRLFADAE  111 (121)
Q Consensus        93 ---~~~~~~~~~~i~~~f~~a~  111 (121)
                         ..|.|.....+...|..|.
T Consensus       152 g~~~~~ig~~~~~~~~~~~~a~  173 (543)
T 3m6a_A          152 GHRRTYVGAMPGRIIQGMKKAG  173 (543)
T ss_dssp             ------------CHHHHHHTTC
T ss_pred             hHHHHHhccCchHHHHHHHHhh
Confidence               1455555556666666553

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=98.86  E-value=7.9e-10  Score=93.51  Aligned_cols=100  Identities=16%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CcccccccCCcHHHHHHHHHHHhhccCCC----------hHHHHH------hCCC----------CCcc--EEEEcCCCC
Q psy3632          14 FDFNKMGIGGLDKEFTAIFRRAFASRVFP----------PEVVEQ------LGCQ----------HVKG--ILLYGPPGT   65 (121)
Q Consensus        14 ~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~----------~~~~~~------~~~~----------~~~~--vll~Gp~G~   65 (121)
                      ..|+  +++|++..+.+. .+.+.+++..          ++.++.      .|+.          +|+|  ++++|||||
T Consensus      1017 ~~~~--~~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A         1017 SSTG--SMSAIDENKQKA-LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp             ---------CTTHHHHHH-HHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred             ceee--ecCCccHHHHHH-HHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence            4555  699999988887 6666666622          334443      2222          3444  999999999


Q ss_pred             cHHHHHHHHHHHhcCCC--CeeecCcc----c--------chhhhch----hHHHHHHHHHHHHHHHHh
Q psy3632          66 GKTLMARQIGQMLNARE--PKIVNGPQ----V--------LDKYVGE----SEANVRRLFADAEEEEKR  116 (121)
Q Consensus        66 GKT~l~~~la~~~~~~~--~~~~~~~~----~--------~~~~~~~----~~~~i~~~f~~a~~~~~~  116 (121)
                      |||++|++++.+.....  +..++...    +        +++|+++    .|+.++.+|..||+.++.
T Consensus      1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A         1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1162 (1706)
T ss_dssp             SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred             ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe
Confidence            99999999998764441  11122222    2        2567777    899999999999876653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.83  E-value=1e-08  Score=67.02  Aligned_cols=80  Identities=18%  Similarity=0.331  Sum_probs=50.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC-------C--CeeecCcc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR-------E--PKIVNGPQ   90 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~-------~--~~~~~~~~   90 (121)
                      ++.|.+..++.+ .+.+.             -....+++|+||+|+|||+++++++..+...       .  +..++...
T Consensus        23 ~~~g~~~~~~~l-~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (187)
T 2p65_A           23 PVIGRDTEIRRA-IQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS   88 (187)
T ss_dssp             CCCSCHHHHHHH-HHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH
T ss_pred             hhhcchHHHHHH-HHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH
Confidence            588888888777 32221             1335679999999999999999999987331       1  11122222


Q ss_pred             cc--hhhhchhHHHHHHHHHHHHHH
Q psy3632          91 VL--DKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        91 ~~--~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      +.  ..+.+.....++.+++.+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~  113 (187)
T 2p65_A           89 LIAGAKYRGDFEERLKSILKEVQDA  113 (187)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHT
T ss_pred             hhcCCCchhHHHHHHHHHHHHHHhc
Confidence            22  124455566677777776543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.81  E-value=2.5e-09  Score=80.70  Aligned_cols=76  Identities=24%  Similarity=0.389  Sum_probs=48.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc----------CCCCeeecCc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN----------AREPKIVNGP   89 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~----------~~~~~~~~~~   89 (121)
                      ++.|.++.++.+ ...+.             -....+++|+||||||||++++++|..+.          .+++. ++.+
T Consensus       181 ~iiGr~~~i~~l-~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~-l~~~  245 (468)
T 3pxg_A          181 PVIGRSKEIQRV-IEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-LDMG  245 (468)
T ss_dssp             CCCCCHHHHHHH-HHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C---
T ss_pred             CccCcHHHHHHH-HHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-eeCC
Confidence            488888888876 32221             13355799999999999999999999972          22222 2222


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHH
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                         ..+.|+.+..++.+|+.++..
T Consensus       246 ---~~~~g~~e~~~~~~~~~~~~~  266 (468)
T 3pxg_A          246 ---TKYRGEFEDRLKKVMDEIRQA  266 (468)
T ss_dssp             ----------CTTHHHHHHHHHTC
T ss_pred             ---ccccchHHHHHHHHHHHHHhc
Confidence               566777777889999988753

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.80  E-value=3.4e-09  Score=80.74  Aligned_cols=72  Identities=24%  Similarity=0.331  Sum_probs=48.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccC-CChHHHHHhCCC---CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          20 GIGGLDKEFTAIFRRAFASRV-FPPEVVEQLGCQ---HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~-~~~~~~~~~~~~---~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      ++.|.+..++++ ...+.... ..+..+...+..   .+++++|+||||||||++|+++|+.++..++. +++++...
T Consensus        40 dliG~~~~~~~L-~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~-in~s~~~~  115 (516)
T 1sxj_A           40 QVCGNKGSVMKL-KNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE-QNASDVRS  115 (516)
T ss_dssp             GCCSCHHHHHHH-HHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE-ECTTSCCC
T ss_pred             HhcCCHHHHHHH-HHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE-EeCCCcch
Confidence            599999998887 55543311 111122222222   45689999999999999999999999776544 45555443

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.77  E-value=3.6e-09  Score=83.82  Aligned_cols=76  Identities=24%  Similarity=0.395  Sum_probs=48.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh----------cCCCCeeecCc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML----------NAREPKIVNGP   89 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~----------~~~~~~~~~~~   89 (121)
                      ++.|.++.++.+ ...+             ......+++|+||||||||++|+++|..+          +..++. ++. 
T Consensus       181 ~iiG~~~~i~~l-~~~l-------------~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~-~~~-  244 (758)
T 3pxi_A          181 PVIGRSKEIQRV-IEVL-------------SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT-LDM-  244 (758)
T ss_dssp             CCCCCHHHHHHH-HHHH-------------HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC-C---
T ss_pred             CccCchHHHHHH-HHHH-------------hCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE-ecc-
Confidence            588898888877 3222             11345679999999999999999999997          222111 111 


Q ss_pred             ccchhhhchhHHHHHHHHHHHHHH
Q psy3632          90 QVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        90 ~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                        ...|.|+.+..++.+|+.+...
T Consensus       245 --g~~~~G~~e~~l~~~~~~~~~~  266 (758)
T 3pxi_A          245 --GTKYRGEFEDRLKKVMDEIRQA  266 (758)
T ss_dssp             ----------CTTHHHHHHHHHTC
T ss_pred             --cccccchHHHHHHHHHHHHHhc
Confidence              3457788888899999988753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.68  E-value=4.6e-08  Score=64.42  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=27.7

Q ss_pred             HHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          47 EQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        47 ~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +++....+.+++|+||||||||++++++++.+.
T Consensus        31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             HhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344555577899999999999999999999884

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.67  E-value=5.2e-09  Score=66.99  Aligned_cols=57  Identities=12%  Similarity=0.089  Sum_probs=37.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      ++.|.+..++++ .+.+...           .....+++|+||||||||++|++++.... +++. +++..
T Consensus         5 ~~iG~s~~~~~l-~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~-~~~~~   61 (143)
T 3co5_A            5 DKLGNSAAIQEM-NREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVS-PARVE   61 (143)
T ss_dssp             ---CCCHHHHHH-HHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEEC-CSSTT
T ss_pred             CceeCCHHHHHH-HHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEE-echhh
Confidence            477888888887 4433211           12345799999999999999999998876 4332 44444

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.67  E-value=6.1e-08  Score=72.89  Aligned_cols=73  Identities=29%  Similarity=0.500  Sum_probs=50.3

Q ss_pred             ccCCcHHHH---HHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhh
Q psy3632          20 GIGGLDKEF---TAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYV   96 (121)
Q Consensus        20 ~i~Gl~~~~---~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~   96 (121)
                      ++.|.++.+   +.+ +..+...             ...+++|+||||||||++++++++.++.++..+ +.       .
T Consensus        27 ~ivGq~~~~~~~~~L-~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l-~a-------~   84 (447)
T 3pvs_A           27 QYIGQQHLLAAGKPL-PRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERI-SA-------V   84 (447)
T ss_dssp             TCCSCHHHHSTTSHH-HHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE-ET-------T
T ss_pred             HhCCcHHHHhchHHH-HHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE-Ee-------c
Confidence            588998877   333 3333211             124799999999999999999999998776553 22       1


Q ss_pred             chhHHHHHHHHHHHHHHH
Q psy3632          97 GESEANVRRLFADAEEEE  114 (121)
Q Consensus        97 ~~~~~~i~~~f~~a~~~~  114 (121)
                      ......++.+|+.|....
T Consensus        85 ~~~~~~ir~~~~~a~~~~  102 (447)
T 3pvs_A           85 TSGVKEIREAIERARQNR  102 (447)
T ss_dssp             TCCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhh
Confidence            123445788888877654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.66  E-value=2.6e-08  Score=66.84  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=26.5

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +.....++|+|||||||||+++.+|..++..+
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~   53 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPF   53 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence            33455799999999999999999999998764

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.66  E-value=5.6e-08  Score=69.79  Aligned_cols=56  Identities=25%  Similarity=0.302  Sum_probs=41.8

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ++.|.+..++++ ...+....       . .-.+..+++|+||||||||++|++++..++.++..
T Consensus        30 ~iiG~~~~~~~l-~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~   85 (338)
T 3pfi_A           30 GYIGQESIKKNL-NVFIAAAK-------K-RNECLDHILFSGPAGLGKTTLANIISYEMSANIKT   85 (338)
T ss_dssp             GCCSCHHHHHHH-HHHHHHHH-------H-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             HhCChHHHHHHH-HHHHHHHH-------h-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence            599999988887 44432211       0 11345679999999999999999999999877544

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.65  E-value=5e-08  Score=78.28  Aligned_cols=79  Identities=23%  Similarity=0.350  Sum_probs=50.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh----------cCCCCeeecCc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML----------NAREPKIVNGP   89 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~----------~~~~~~~~~~~   89 (121)
                      ++.|.++.++.+ ...+             .-....+++|+||||||||++++++|..+          +..++ .++.+
T Consensus       171 ~viGr~~~i~~l-~~~l-------------~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~-~l~~~  235 (854)
T 1qvr_A          171 PVIGRDEEIRRV-IQIL-------------LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV-SLQMG  235 (854)
T ss_dssp             CCCSCHHHHHHH-HHHH-------------HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE-EECC-
T ss_pred             ccCCcHHHHHHH-HHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE-EeehH
Confidence            477888777766 2222             11335679999999999999999999987          33322 24555


Q ss_pred             ccc--hhhhchhHHHHHHHHHHHHHH
Q psy3632          90 QVL--DKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        90 ~~~--~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      .+.  ..+.|+.+..++.+|+.+...
T Consensus       236 ~l~~g~~~~g~~~~~l~~~~~~~~~~  261 (854)
T 1qvr_A          236 SLLAGAKYRGEFEERLKAVIQEVVQS  261 (854)
T ss_dssp             ----------CHHHHHHHHHHHHHTT
T ss_pred             HhhccCccchHHHHHHHHHHHHHHhc
Confidence            555  457788888999999988753

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.64  E-value=4.7e-08  Score=62.59  Aligned_cols=47  Identities=30%  Similarity=0.429  Sum_probs=33.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|-+..++++ .+.+..          +. .....++|+||||||||++|++++...
T Consensus         2 ~iiG~s~~~~~~-~~~~~~----------~a-~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A            2 ELIGRSEWINQY-RRRLQQ----------LS-ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             --CCSSHHHHHH-HHHHHH----------HT-TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CceeCCHHHHHH-HHHHHH----------Hh-CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            366777777777 332221          11 234569999999999999999999976

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.57  E-value=1.7e-07  Score=74.22  Aligned_cols=79  Identities=24%  Similarity=0.317  Sum_probs=52.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC---------CeeecCcc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE---------PKIVNGPQ   90 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~---------~~~~~~~~   90 (121)
                      ++.|.+..++.+ .+.             +......+++|+||||||||+++++++..+....         +..++...
T Consensus       187 ~~iGr~~~i~~l-~~~-------------l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~  252 (758)
T 1r6b_X          187 PLIGREKELERA-IQV-------------LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS  252 (758)
T ss_dssp             CCCSCHHHHHHH-HHH-------------HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred             CccCCHHHHHHH-HHH-------------HhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH
Confidence            467777776665 222             2223466899999999999999999999873210         11123333


Q ss_pred             cc--hhhhchhHHHHHHHHHHHHH
Q psy3632          91 VL--DKYVGESEANVRRLFADAEE  112 (121)
Q Consensus        91 ~~--~~~~~~~~~~i~~~f~~a~~  112 (121)
                      +.  ..+.|+.+..++.+|+.++.
T Consensus       253 l~~~~~~~g~~e~~l~~~~~~~~~  276 (758)
T 1r6b_X          253 LLAGTKYRGDFEKRFKALLKQLEQ  276 (758)
T ss_dssp             --CCCCCSSCHHHHHHHHHHHHSS
T ss_pred             HhccccccchHHHHHHHHHHHHHh
Confidence            33  35677888899999988764

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.56  E-value=2e-07  Score=66.69  Aligned_cols=26  Identities=35%  Similarity=0.561  Sum_probs=23.8

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...+++|+||||||||++++++++.+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            34679999999999999999999988

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.52  E-value=1.6e-07  Score=66.79  Aligned_cols=55  Identities=25%  Similarity=0.405  Sum_probs=40.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      ++.|.+..++++ ...+...       ...+ ..+.+++|+||+|||||++|++++..++.++.
T Consensus        13 ~~ig~~~~~~~l-~~~l~~~-------~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~   67 (324)
T 1hqc_A           13 EYIGQERLKQKL-RVYLEAA-------KARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR   67 (324)
T ss_dssp             TCCSCHHHHHHH-HHHHHHH-------HHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred             HhhCHHHHHHHH-HHHHHHH-------HccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            599999988877 4433211       1111 24567999999999999999999999887644

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.51  E-value=1.2e-07  Score=62.46  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=29.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY   95 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~   95 (121)
                      ...++|+||+||||||+++.+|..++..+   ++...++...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~---i~~d~~~~~~   43 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRIL---YDSDKEIEKR   43 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCE---EEHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCE---EEChHHHHHH
Confidence            44689999999999999999999998764   3344444433

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=98.48  E-value=6.5e-08  Score=69.37  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=26.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ..+++|+||||||||++++++|..++.++..
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~   76 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHR   76 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            3579999999999999999999998776443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.47  E-value=1.5e-07  Score=67.92  Aligned_cols=29  Identities=10%  Similarity=0.045  Sum_probs=25.9

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -..+.+++|+||||||||++++.++.++.
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34677899999999999999999999984

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=98.46  E-value=1.7e-07  Score=67.32  Aligned_cols=54  Identities=28%  Similarity=0.498  Sum_probs=37.7

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..++.+|+  ++.|.+..++.+ ......             ....+++|+||||||||++|++++..++
T Consensus        17 ~~~~~~f~--~i~G~~~~~~~l-~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           17 TRPVFPFS--AIVGQEDMKLAL-LLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             -CCCCCGG--GSCSCHHHHHHH-HHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCCCCCch--hccChHHHHHHH-HHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            34556666  599999866544 221111             1234699999999999999999999886

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.45  E-value=5.8e-07  Score=64.15  Aligned_cols=52  Identities=21%  Similarity=0.084  Sum_probs=39.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ++.|.++.++.+ +..+..            -..+..++++||||||||++++++|+.++.++..
T Consensus        27 ~ivg~~~~~~~l-~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~   78 (324)
T 3u61_B           27 ECILPAFDKETF-KSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMF   78 (324)
T ss_dssp             TSCCCHHHHHHH-HHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred             HHhCcHHHHHHH-HHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence            588999988877 544431            1234557888999999999999999999776544

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.44  E-value=5.3e-07  Score=60.00  Aligned_cols=45  Identities=29%  Similarity=0.507  Sum_probs=34.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+..++.+ ...+..             ....+++|+||+|+|||+++++++..+
T Consensus        18 ~~~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           18 EVVGQDEVIQRL-KGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             GCCSCHHHHHHH-HHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            588999888877 444321             122349999999999999999999976

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.43  E-value=1.1e-07  Score=65.79  Aligned_cols=39  Identities=23%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      +.....+.|.||+||||||+++++++.+.+..+.+...+
T Consensus        28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   66 (235)
T 3tif_A           28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN   66 (235)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECC
Confidence            444555889999999999999999999988777764333

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.42  E-value=3.8e-07  Score=59.32  Aligned_cols=27  Identities=44%  Similarity=0.789  Sum_probs=24.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..++|+|||||||||+++.+|+.++..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~~~   31 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLNME   31 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            458999999999999999999998753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.41  E-value=3.7e-07  Score=59.60  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=28.9

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.+...+.|.||+|+||||+++++++.+ +..+.+
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V   63 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV   63 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence            444555568899999999999999999998 555554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.37  E-value=2.8e-07  Score=66.55  Aligned_cols=53  Identities=28%  Similarity=0.431  Sum_probs=35.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++.|.+..++.+ ...+...       ..-+ .++..++|+||||+||||+++++|+.++..
T Consensus        26 ~~~g~~~~~~~l-~~~i~~~-------~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~   78 (334)
T 1in4_A           26 EFIGQENVKKKL-SLALEAA-------KMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTN   78 (334)
T ss_dssp             GCCSCHHHHHHH-HHHHHHH-------HHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             HccCcHHHHHHH-HHHHHHH-------HhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            366777766665 3333211       0001 234679999999999999999999998654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.36  E-value=5.8e-07  Score=63.53  Aligned_cols=55  Identities=25%  Similarity=0.402  Sum_probs=37.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.|.+..++.+ ...+....      ..+.  -.+...++|+||||||||++|+++++.+...
T Consensus        18 ~i~G~~~~~~~l-~~~i~~~~------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~   74 (311)
T 4fcw_A           18 RVVGQDEAIRAV-ADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT   74 (311)
T ss_dssp             TCCSCHHHHHHH-HHHHHHHH------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred             hcCCHHHHHHHH-HHHHHHHh------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence            477888888877 43332210      0000  1223469999999999999999999998543

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.36  E-value=1.1e-06  Score=59.11  Aligned_cols=49  Identities=29%  Similarity=0.451  Sum_probs=36.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++.|.+..++.+ ...+..           + ..+..++|+||+|+|||++++.+++.+...
T Consensus        24 ~~~g~~~~~~~l-~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           24 DVVGQEHVLTAL-ANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             GCCSCHHHHHHH-HHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             HHhCcHHHHHHH-HHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            588999888877 433321           1 223468999999999999999999988653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.35  E-value=5.6e-07  Score=64.53  Aligned_cols=46  Identities=30%  Similarity=0.572  Sum_probs=34.4

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.++.++.+ ...+..             ....+++|+||||+|||++++++++.+.
T Consensus        38 ~i~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           38 EVTAQDHAVTVL-KKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             TCCSCCTTHHHH-HHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HhhCCHHHHHHH-HHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            588888887776 433321             1123499999999999999999999864

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.35  E-value=5.2e-07  Score=62.73  Aligned_cols=48  Identities=23%  Similarity=0.353  Sum_probs=33.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++++ .+.+...          . ..+.+++|+||||||||++|++++....
T Consensus         7 ~~ig~~~~~~~~-~~~~~~~----------~-~~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A            7 NLLGEANSFLEV-LEQVSHL----------A-PLDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             ---CCCHHHHHH-HHHHHHH----------T-TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             cceeCCHHHHHH-HHHHHHH----------h-CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            478888888877 3322211          1 2345799999999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.34  E-value=1.5e-06  Score=58.75  Aligned_cols=28  Identities=29%  Similarity=0.466  Sum_probs=24.6

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ...+++|+||||||||+++++++..+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3567999999999999999999998753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.34  E-value=6.8e-07  Score=64.54  Aligned_cols=49  Identities=29%  Similarity=0.391  Sum_probs=37.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+++++++ ...+...+         .-..+.+++|+||||||||++++++++.+
T Consensus        20 ~~~gr~~~~~~l-~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           20 VLPHREAELRRL-AEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCTTCHHHHHHH-HHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHH-HHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            689999998887 43332211         12345689999999999999999999988

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.33  E-value=2.5e-07  Score=61.17  Aligned_cols=30  Identities=27%  Similarity=0.412  Sum_probs=24.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +..+..++|.|||||||||+++++++.++.
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~   35 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANLPGV   35 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTCSSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhccCC
Confidence            344556889999999999999999998543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.32  E-value=2.6e-07  Score=65.05  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=31.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      +..+.-+.|.||+|+||||+++++++.+.+..+.+...+
T Consensus        34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g   72 (266)
T 4g1u_C           34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG   72 (266)
T ss_dssp             EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence            344455889999999999999999999988777764333

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.32  E-value=1.8e-06  Score=62.49  Aligned_cols=60  Identities=20%  Similarity=0.363  Sum_probs=41.0

Q ss_pred             cCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          10 ISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        10 ~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+...++  ++.|-+++++++ ...+....      .  + ..+.  .++|+||+|+|||++++++++.+...
T Consensus        10 l~~~~~p~--~l~gr~~~~~~l-~~~l~~~~------~--~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           10 FSPSYVPK--RLPHREQQLQQL-DILLGNWL------R--N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             GSTTCCCS--CCTTCHHHHHHH-HHHHHHHH------H--S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             cCCccCCC--CCCChHHHHHHH-HHHHHHHH------c--C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            33444333  599999988887 43332111      0  1 2233  79999999999999999999998543

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.31  E-value=4.1e-07  Score=60.06  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=25.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+..++|.|+|||||||+++.++..++..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~   32 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLP   32 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            345568999999999999999999998755

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.31  E-value=4.7e-07  Score=70.21  Aligned_cols=47  Identities=26%  Similarity=0.550  Sum_probs=35.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ++.|.+..++.+ ...+               .....++|+|||||||||+++++++.+....
T Consensus        42 ~i~G~~~~l~~l-~~~i---------------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           42 QVIGQEHAVEVI-KTAA---------------NQKRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             HCCSCHHHHHHH-HHHH---------------HTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             eEECchhhHhhc-cccc---------------cCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            477888777666 3222               2235799999999999999999999986653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.31  E-value=6.5e-07  Score=70.94  Aligned_cols=66  Identities=21%  Similarity=0.397  Sum_probs=41.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC----CCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCeeecCcccc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ----HVKGILLYGPPGTGKTLMARQIGQMLN---AREPKIVNGPQVL   92 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~----~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~~~~~~~~   92 (121)
                      .+.|.+..++.+ .+.+....        .+..    +..+++|+||||||||++|+++|..+.   .+++. ++.+.+.
T Consensus       492 ~viGq~~a~~~l-~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~-i~~s~~~  561 (758)
T 3pxi_A          492 RVIGQDEAVVAV-AKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIR-IDMSEYM  561 (758)
T ss_dssp             TSCSCHHHHHHH-HHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE-EEGGGGC
T ss_pred             cCcChHHHHHHH-HHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEE-Eechhcc
Confidence            467888877776 33332211        1111    223699999999999999999999973   33332 5555555


Q ss_pred             hhh
Q psy3632          93 DKY   95 (121)
Q Consensus        93 ~~~   95 (121)
                      ..+
T Consensus       562 ~~~  564 (758)
T 3pxi_A          562 EKH  564 (758)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            433

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.31  E-value=4.1e-07  Score=59.45  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=25.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      ..++++|+||+||||+++.++..++.+++
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~   32 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPEPWL   32 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence            45889999999999999999999876543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.30  E-value=1.5e-06  Score=61.47  Aligned_cols=46  Identities=28%  Similarity=0.480  Sum_probs=35.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++.|.+..++.+ ...+..           +  ...+++|+||+|+|||++++++++.+.
T Consensus        26 ~~~g~~~~~~~l-~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           26 DIVGQEHIVKRL-KHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             TCCSCHHHHHHH-HHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HhhCCHHHHHHH-HHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            589999988877 443321           1  122499999999999999999999864

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.30  E-value=3.6e-07  Score=62.30  Aligned_cols=30  Identities=17%  Similarity=0.398  Sum_probs=25.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++...+++++||||||||++|.++|+.+..
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g   84 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQG   84 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            333457999999999999999999999853

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.30  E-value=1.6e-06  Score=62.49  Aligned_cols=47  Identities=30%  Similarity=0.560  Sum_probs=34.4

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+.+++.+ ...+..           + ..+ +++|+||||||||++++++|+.+..
T Consensus        26 ~~~g~~~~~~~L-~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           26 EVYGQNEVITTV-RKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             GCCSCHHHHHHH-HHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HhcCcHHHHHHH-HHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            477888877776 443321           1 112 3999999999999999999998743

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.29  E-value=2.4e-07  Score=63.56  Aligned_cols=36  Identities=19%  Similarity=0.335  Sum_probs=29.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +..+..+.|.||+|||||||++++++.+.+..+.+.
T Consensus        27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~   62 (224)
T 2pcj_A           27 VKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF   62 (224)
T ss_dssp             EETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            344455889999999999999999999887766653

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.29  E-value=3.6e-07  Score=63.86  Aligned_cols=29  Identities=24%  Similarity=0.348  Sum_probs=25.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ...++|+|++||||||+++.+|+.++..+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~   76 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF   76 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence            45699999999999999999999998653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.28  E-value=6.9e-07  Score=59.61  Aligned_cols=27  Identities=41%  Similarity=0.599  Sum_probs=24.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+++|+||+|||||+++++++..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            689999999999999999999988543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.28  E-value=1.3e-06  Score=63.29  Aligned_cols=49  Identities=22%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+++++++ ...+....         .-..+.+++|+||||+|||++++++++.+
T Consensus        21 ~l~gr~~~~~~l-~~~l~~~~---------~~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           21 EIPFREDILRDA-AIAIRYFV---------KNEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             SCTTCHHHHHHH-HHHHHHHH---------TTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHH-HHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            689999998887 43332211         11345679999999999999999999987

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.27  E-value=1.7e-06  Score=64.83  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=23.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...++|+||||+|||++++++++.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999988

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.27  E-value=5e-07  Score=58.49  Aligned_cols=27  Identities=26%  Similarity=0.242  Sum_probs=24.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .|+|.|+|||||||+++.++..++..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~   29 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPI   29 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCee
Confidence            478999999999999999999988653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.26  E-value=1.4e-06  Score=68.98  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=28.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      ..+++|+||||||||++|+++|..++.+++. ++.+++
T Consensus       488 ~~~~ll~G~~GtGKT~la~~la~~l~~~~~~-i~~s~~  524 (758)
T 1r6b_X          488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLR-FDMSEY  524 (758)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHTCEEEE-EEGGGC
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHHhcCCEEE-Eechhh
Confidence            3469999999999999999999999766443 444443

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.26  E-value=4.8e-07  Score=66.48  Aligned_cols=44  Identities=14%  Similarity=0.209  Sum_probs=33.1

Q ss_pred             HHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          46 VEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        46 ~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      ++++.++.  ..-+.|.||+||||||+++++++.+.+..+.+...+
T Consensus        44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G   89 (366)
T 3tui_C           44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG   89 (366)
T ss_dssp             EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred             EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence            44444443  445889999999999999999999988777764333

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.25  E-value=1.9e-06  Score=62.12  Aligned_cols=49  Identities=22%  Similarity=0.329  Sum_probs=37.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+++++.+ ...+...+         .-..+..++|+||+|+|||++++++++.+
T Consensus        21 ~~~gr~~e~~~l-~~~l~~~~---------~~~~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           21 ELPHREDQIRKI-ASILAPLY---------REEKPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCTTCHHHHHHH-HHSSGGGG---------GTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHH-HHHHHHHH---------cCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            589999988887 43332111         11345679999999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.25  E-value=1.5e-06  Score=61.71  Aligned_cols=27  Identities=33%  Similarity=0.449  Sum_probs=23.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +..++|.|||||||||+++.++..++.
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~~~   59 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEETQG   59 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            556889999999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.24  E-value=4.1e-07  Score=63.10  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=29.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.++..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   59 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI   59 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            44455688999999999999999999987766665

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.24  E-value=2.6e-06  Score=61.45  Aligned_cols=48  Identities=29%  Similarity=0.458  Sum_probs=36.7

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++.|.+..++.+ ...+..           + ..+..++|+||+|+|||++++++++.+..
T Consensus        17 ~~vg~~~~~~~L-~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           17 DVVGQEHVLTAL-ANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             TSCSCHHHHHHH-HHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             hccCcHHHHHHH-HHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            589999988877 444321           1 22346899999999999999999998864

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.24  E-value=4.4e-07  Score=67.03  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .....+.|.||+||||||++++||+...+..+.+.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~   61 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF   61 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE
Confidence            34445889999999999999999999887766653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.24  E-value=3.4e-07  Score=67.09  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=29.0

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      ....-+.|.||+||||||++++||+...+..+.+.
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~   62 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS   62 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence            33445889999999999999999999887766653

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.23  E-value=2.4e-06  Score=60.30  Aligned_cols=45  Identities=29%  Similarity=0.507  Sum_probs=34.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+..++.+ ...+..             ....+++|+||+|+|||++++++++.+
T Consensus        18 ~~~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           18 EVVGQDEVIQRL-KGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             GSCSCHHHHHHH-HTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHH-HHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            588999888876 333221             112249999999999999999999986

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.23  E-value=2.1e-06  Score=57.44  Aligned_cols=28  Identities=36%  Similarity=0.424  Sum_probs=24.6

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..+..+.|.||+||||||+++++++.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455688999999999999999999986

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.22  E-value=9.4e-07  Score=62.01  Aligned_cols=41  Identities=27%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             HHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC-CCee
Q psy3632          45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR-EPKI   85 (121)
Q Consensus        45 ~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~-~~~~   85 (121)
                      .++++.+.+...++++||+||||||+++++++.+... .+.+
T Consensus        16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I   57 (261)
T 2eyu_A           16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI   57 (261)
T ss_dssp             HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE
T ss_pred             HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE
Confidence            3444445556668999999999999999999988654 4544

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.22  E-value=1.5e-06  Score=62.46  Aligned_cols=46  Identities=20%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+..++.+ +..+.   .       .+ ..+. ++|+||+|+||||+++++++.+
T Consensus        15 ~~vg~~~~~~~l-~~~~~---~-------~~-~~~~-~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           15 ALSHNEELTNFL-KSLSD---Q-------PR-DLPH-LLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             GCCSCHHHHHHH-HTTTT---C-------TT-CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred             HhcCCHHHHHHH-HHHHh---h-------CC-CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence            588999887766 33220   0       01 1233 9999999999999999999954

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.22  E-value=3.6e-07  Score=64.17  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=29.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +..+..+.|.||+|||||||++++++.+.+..+.+.
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~   64 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII   64 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            344445889999999999999999999887766653

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.22  E-value=2.9e-06  Score=60.59  Aligned_cols=59  Identities=20%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc---CCCCeeecCccc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN---AREPKIVNGPQV   91 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~---~~~~~~~~~~~~   91 (121)
                      ++.|.+..++++ .+.+...          . ....+++|+||||||||++|++++....   .+++. +++..+
T Consensus         3 ~iig~s~~~~~~-~~~~~~~----------a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~-v~~~~~   64 (304)
T 1ojl_A            3 HMIGSSPAMQHL-LNEIAMV----------A-PSDATVLIHGDSGTGKELVARALHACSARSDRPLVT-LNCAAL   64 (304)
T ss_dssp             CCCCCSHHHHHH-HHHHHHH----------C-STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCE-EECSSC
T ss_pred             CcEECCHHHHHH-HHHHHHH----------h-CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEE-EeCCCC
Confidence            477888888877 3332211          1 3355799999999999999999999753   34444 444443

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.22  E-value=3.6e-07  Score=63.96  Aligned_cols=42  Identities=24%  Similarity=0.411  Sum_probs=32.0

Q ss_pred             HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.++.  +..+.|.||+||||||+++++++.+.+..+.+.
T Consensus        22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~   65 (257)
T 1g6h_A           22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY   65 (257)
T ss_dssp             EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            344444444  445889999999999999999999887766653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.22  E-value=4.9e-07  Score=62.75  Aligned_cols=36  Identities=19%  Similarity=0.433  Sum_probs=29.6

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.. ..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i   55 (240)
T 2onk_A           20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEV   55 (240)
T ss_dssp             EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            34556 6788999999999999999999987665554

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=98.21  E-value=5.5e-07  Score=68.63  Aligned_cols=27  Identities=33%  Similarity=0.695  Sum_probs=24.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+++|+||||||||++|+++|..++.
T Consensus        41 ~~~VLL~GpPGtGKT~LAraLa~~l~~   67 (500)
T 3nbx_X           41 GESVFLLGPPGIAKSLIARRLKFAFQN   67 (500)
T ss_dssp             TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred             CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence            457999999999999999999998754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.21  E-value=3.5e-07  Score=64.75  Aligned_cols=41  Identities=15%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             HHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          46 VEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        46 ~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      ++++.+.  .+.-+.|.||+||||||+++++++.+.+..+.+.
T Consensus        24 L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~   66 (275)
T 3gfo_A           24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL   66 (275)
T ss_dssp             EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE
Confidence            3444433  3445889999999999999999999887767663

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.20  E-value=4.7e-07  Score=63.86  Aligned_cols=42  Identities=26%  Similarity=0.376  Sum_probs=32.1

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  +.....+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus        34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~   77 (271)
T 2ixe_A           34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL   77 (271)
T ss_dssp             CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence            344444  344555889999999999999999999887766653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.20  E-value=8.9e-07  Score=57.48  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=25.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ..++|.|++||||||+++.+|..++.++
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~   35 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEV   35 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            3689999999999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.20  E-value=5.2e-07  Score=62.84  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=29.5

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +..+.-+.|.||+||||||+++++++.+.+..+.+.
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~   67 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL   67 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            344555889999999999999999999887766653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.20  E-value=3.9e-07  Score=63.16  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=28.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +..+.-+.|.||+|+||||+++++++.+.+..+.+
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   63 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI   63 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            33444588999999999999999999987766665

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.20  E-value=7.2e-07  Score=58.35  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=24.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .++|.|+|||||||+++.+|..++..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~   32 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVF   32 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence            488999999999999999999998653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.20  E-value=1.1e-06  Score=58.54  Aligned_cols=27  Identities=26%  Similarity=0.484  Sum_probs=23.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.-+.|.||+||||||+++++++.+.
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            345588999999999999999999863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.19  E-value=4.4e-07  Score=63.85  Aligned_cols=41  Identities=22%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.+  ..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I   81 (263)
T 2olj_A           39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI   81 (263)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence            3444444  3444588999999999999999999987766665

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.19  E-value=1.2e-06  Score=58.55  Aligned_cols=28  Identities=21%  Similarity=0.429  Sum_probs=24.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+..++|.||+||||||+++++++.++.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~   55 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGL   55 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            3456889999999999999999999853

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.19  E-value=5.8e-07  Score=65.91  Aligned_cols=35  Identities=23%  Similarity=0.351  Sum_probs=28.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....+.|.||+||||||++++||+...+..+.+
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (359)
T 2yyz_A           26 VKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI   60 (359)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE
Confidence            33445588999999999999999999987766665

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.19  E-value=6.1e-07  Score=65.85  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=28.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....+.|.||+||||||++++||+...+..+.+
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (362)
T 2it1_A           26 IKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI   60 (362)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             ECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE
Confidence            33444588999999999999999999987766665

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.18  E-value=6.2e-07  Score=62.57  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      +..+..+.|.||+|+|||||++++++.+.+. +.+..
T Consensus        23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~   58 (249)
T 2qi9_C           23 VRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF   58 (249)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence            3445558899999999999999999998877 77643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.18  E-value=4.9e-07  Score=61.80  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +....-+.|.||+|+||||+++++++.+.+..+.+
T Consensus        32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I   66 (214)
T 1sgw_A           32 IEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI   66 (214)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            34455588999999999999999999987766665

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.18  E-value=2.6e-06  Score=57.40  Aligned_cols=29  Identities=28%  Similarity=0.504  Sum_probs=24.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+.-+.|.||+||||||++++|++.+..
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34556889999999999999999999873

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.18  E-value=1e-06  Score=57.79  Aligned_cols=29  Identities=31%  Similarity=0.581  Sum_probs=25.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +..|+|+|+||+||||+++.++..++..+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~   39 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSGLKY   39 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence            45699999999999999999999987653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.18  E-value=1.2e-06  Score=58.13  Aligned_cols=24  Identities=38%  Similarity=0.696  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .++|+||+||||||+++++++.++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999986

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.18  E-value=6.5e-07  Score=65.90  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=29.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.....+.|.||+||||||++++||+...+..+.+.
T Consensus        34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   69 (372)
T 1v43_A           34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY   69 (372)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE
Confidence            334445889999999999999999999887766653

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.17  E-value=4.4e-06  Score=58.97  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=34.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+..++.+ ...+..           + ..+ +++|+||+|+|||++++++++.+
T Consensus        22 ~~~g~~~~~~~l-~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           22 DIVGNKETIDRL-QQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             GCCSCTHHHHHH-HHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHH-HHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHh
Confidence            588999988877 444321           1 222 39999999999999999999986

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.17  E-value=5.6e-07  Score=65.86  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=28.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....+.|.||+||||||++++||+...+..+.+
T Consensus        38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   72 (355)
T 1z47_A           38 IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV   72 (355)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence            33445588999999999999999999987766665

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.17  E-value=2e-06  Score=59.70  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=25.5

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+..++|.|+|||||||+++.++..++..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~   59 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGN   59 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            345568999999999999999999998743

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.17  E-value=1.7e-06  Score=61.95  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ..+.-++++||+|+||||+++.+|+.+....+.+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V  131 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV  131 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            3455688999999999999999999987665554

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.16  E-value=5.7e-07  Score=63.02  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=28.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +..+..+.|.||+|+|||||++++++.+.+..+.+
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I   72 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV   72 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            34444588999999999999999999987766665

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.16  E-value=1.2e-06  Score=58.35  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+.-++|+||+||||||+++.+++.+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            345568899999999999999999987

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.16  E-value=2e-06  Score=58.08  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++....-+.|+|||||||||+++.++.....
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5666777999999999999999999986544

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.16  E-value=1.1e-06  Score=58.23  Aligned_cols=28  Identities=43%  Similarity=0.495  Sum_probs=24.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH-hcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM-LNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~-~~~~   81 (121)
                      +..++|+|++||||||+++.++.. ++.+
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~   38 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAELDGFQ   38 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence            446999999999999999999998 5644

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.15  E-value=1.3e-06  Score=59.45  Aligned_cols=28  Identities=18%  Similarity=0.491  Sum_probs=23.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +..+.-+.|+||+|+||||+++++++.+
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3444558899999999999999999987

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.15  E-value=5.3e-07  Score=62.07  Aligned_cols=35  Identities=29%  Similarity=0.300  Sum_probs=28.5

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....+.|.||+|+||||+++++++.+.+..+.+
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   65 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI   65 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE
Confidence            34455588999999999999999999987765554

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.15  E-value=5.6e-07  Score=63.80  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=31.9

Q ss_pred             HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.+.  ....+.|.||+|+|||||++++++.+.+..+.+.
T Consensus        36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~   79 (279)
T 2ihy_A           36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN   79 (279)
T ss_dssp             EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE
Confidence            34444433  4445889999999999999999999887766653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.15  E-value=5.5e-07  Score=65.76  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=29.5

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.....+.|.||+||||||++++||+...+..+.+.
T Consensus        23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~   58 (348)
T 3d31_A           23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL   58 (348)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEE
T ss_pred             EcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEE
Confidence            344455889999999999999999999887766653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.15  E-value=6.5e-07  Score=65.89  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....+.|.||+||||||++++||+...+..+.+
T Consensus        26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (372)
T 1g29_1           26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI   60 (372)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence            33445588999999999999999999987776665

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.15  E-value=1.6e-06  Score=61.15  Aligned_cols=25  Identities=40%  Similarity=0.631  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++|+||||||||++++++|..+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhh
Confidence            4579999999999999999999964

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.15  E-value=1.4e-06  Score=57.29  Aligned_cols=27  Identities=30%  Similarity=0.578  Sum_probs=24.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .|+|+|+|||||||+++.++..++.++
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~   30 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGL   30 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            489999999999999999999998663

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.14  E-value=4.1e-07  Score=62.98  Aligned_cols=36  Identities=14%  Similarity=0.183  Sum_probs=28.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.....+.|.||+||||||+++++++.+.+..+.+
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I   62 (237)
T 2cbz_A           27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV   62 (237)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            344455688999999999999999999886654443

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.14  E-value=1.4e-06  Score=58.15  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.-++|+|++|+||||+++.++..++..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~   45 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYP   45 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence            3468999999999999999999998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.14  E-value=5.9e-07  Score=64.52  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+...+.|+||+|+||||+++++++.+.+..+.+.
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~  112 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR  112 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEE
Confidence            34455899999999999999999999887766653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.14  E-value=3e-06  Score=56.07  Aligned_cols=28  Identities=25%  Similarity=0.406  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|.|+|||||||+++.++..++..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~   39 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFT   39 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            3458999999999999999999998744

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.14  E-value=6.6e-07  Score=62.92  Aligned_cols=35  Identities=14%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +..+..+.|.||+|+||||+++++++.+.+..+.+
T Consensus        30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I   64 (266)
T 2yz2_A           30 INEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV   64 (266)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            34455588999999999999999999987766665

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.13  E-value=1.1e-06  Score=57.75  Aligned_cols=27  Identities=33%  Similarity=0.714  Sum_probs=23.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..++|.|+|||||||+++.++..++..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~~~   31 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELGFK   31 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            458899999999999999999988744

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.12  E-value=1.7e-06  Score=58.17  Aligned_cols=30  Identities=20%  Similarity=0.364  Sum_probs=24.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+..+.-+.|.||+||||||+++++++.+.
T Consensus        16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            344555688999999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.12  E-value=1.2e-06  Score=56.45  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=24.4

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ....++|+||+|+|||++++++++.+..
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4557999999999999999999998843

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.11  E-value=1.9e-06  Score=57.85  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=22.7

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++..++|+||+|+||||+++.+++.+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            345689999999999999999999874

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.11  E-value=2.2e-06  Score=55.88  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=24.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..++|+||||+||||+++.+++.++..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~   35 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLHAA   35 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhCcE
Confidence            3458899999999999999999988643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.11  E-value=3.1e-06  Score=60.60  Aligned_cols=26  Identities=35%  Similarity=0.662  Sum_probs=24.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..+++|+||||||||+++.++|..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999999876

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.11  E-value=2.2e-06  Score=57.25  Aligned_cols=28  Identities=36%  Similarity=0.599  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|+|+|||||||+++.++..++..
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~~~   47 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLGIP   47 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            3458899999999999999999998765

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.11  E-value=2.4e-06  Score=62.63  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=27.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ..+.-++++||+|+||||+++.+|+.+....+.+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V  188 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV  188 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence            3455688999999999999999999987655554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.10  E-value=5.4e-07  Score=65.91  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=28.8

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....+.|.||+||||||++++||+...+..+.+
T Consensus        28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   62 (353)
T 1oxx_K           28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL   62 (353)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            34445588999999999999999999987766665

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.10  E-value=1.4e-06  Score=58.26  Aligned_cols=25  Identities=32%  Similarity=0.345  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.|.||+||||||+++.+++ ++..
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~   28 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVP   28 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence            478999999999999999998 5544

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.10  E-value=2.4e-06  Score=57.06  Aligned_cols=25  Identities=36%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.++|++||||||+++.+++ ++..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~   27 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAY   27 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCE
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCE
Confidence            378999999999999999999 6543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.09  E-value=1.9e-06  Score=60.01  Aligned_cols=26  Identities=46%  Similarity=0.474  Sum_probs=23.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -++++|||||||||+++.+|..++..
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~   28 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWP   28 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence            37899999999999999999998765

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.09  E-value=7.3e-07  Score=62.32  Aligned_cols=34  Identities=15%  Similarity=0.166  Sum_probs=27.6

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      +..+.-+.|.||+|+||||+++++++.+.+..+.
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   61 (253)
T 2nq2_C           28 LNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK   61 (253)
T ss_dssp             EETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            3444558899999999999999999998765444

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.09  E-value=2.5e-06  Score=56.28  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +.-++|+||+|+||||+++++++.+.
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34588999999999999999999764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.09  E-value=2.7e-06  Score=58.67  Aligned_cols=28  Identities=29%  Similarity=0.627  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..++|.|||||||||++++|+..++..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~   54 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ   54 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            4569999999999999999999887654

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.09  E-value=1.6e-06  Score=58.72  Aligned_cols=27  Identities=26%  Similarity=0.489  Sum_probs=23.7

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+.|.||+||||||+++.+++.++.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~   32 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQWH   32 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            358899999999999999999988644

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.08  E-value=1.5e-06  Score=57.40  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=24.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|.|+|||||||+++.++..++..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~   36 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGYT   36 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            4468999999999999999999998754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.08  E-value=2.8e-06  Score=61.01  Aligned_cols=35  Identities=23%  Similarity=0.527  Sum_probs=28.5

Q ss_pred             HHHHHh--CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          44 EVVEQL--GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        44 ~~~~~~--~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+++.+  .++++..+.|+||+|+|||||+++|++.+
T Consensus       114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            345544  45556669999999999999999999998

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.08  E-value=2.9e-06  Score=62.51  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=28.4

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++++.+..++++||||+||||+++++++.++..
T Consensus       164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~  196 (377)
T 1svm_A          164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK  196 (377)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence            367777789999999999999999999987543

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.08  E-value=1.8e-06  Score=56.76  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..|+|.|+|||||||+++.++..++..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~   30 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYGYT   30 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            458899999999999999999988754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.08  E-value=2.2e-06  Score=56.30  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..++|.|+|||||||+++.++..++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3588999999999999999999887

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.07  E-value=2.7e-06  Score=58.69  Aligned_cols=35  Identities=26%  Similarity=0.252  Sum_probs=23.4

Q ss_pred             HHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          46 VEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        46 ~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++++.+..  +.-+.|.||+||||||+++.+++.++.
T Consensus        15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~   51 (245)
T 2jeo_A           15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ   51 (245)
T ss_dssp             --------CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred             ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            44444444  344789999999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.07  E-value=2e-06  Score=58.24  Aligned_cols=28  Identities=32%  Similarity=0.571  Sum_probs=24.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|.|+|||||||+++.+|..++..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~   31 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHAA   31 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence            3468999999999999999999998754

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.07  E-value=2.1e-06  Score=58.17  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=24.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|.|||||||||+++.+|..++..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~   32 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQLA   32 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            4469999999999999999999999854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.07  E-value=2.2e-06  Score=57.68  Aligned_cols=25  Identities=40%  Similarity=0.529  Sum_probs=23.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |+|+|||||||||+++.++..++..
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYEIP   27 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7899999999999999999998765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.07  E-value=1.9e-06  Score=55.88  Aligned_cols=26  Identities=27%  Similarity=0.511  Sum_probs=23.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+|+|++||||||+++.++..++.+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~   29 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALGYE   29 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            48999999999999999999998755

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.07  E-value=2.3e-06  Score=55.66  Aligned_cols=22  Identities=45%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ..+++.|+|||||||+++.++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3588999999999999999998

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.07  E-value=1.3e-06  Score=64.67  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=30.6

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  +.....+.|.||+||||||++++|++.+. ..+.+.
T Consensus        36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~   78 (390)
T 3gd7_A           36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQ   78 (390)
T ss_dssp             SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEE
T ss_pred             EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEE
Confidence            344444  34455589999999999999999999876 556653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.06  E-value=2.1e-06  Score=57.83  Aligned_cols=26  Identities=27%  Similarity=0.468  Sum_probs=23.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+|+|||||||||+++.++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIP   27 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            37899999999999999999988754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.06  E-value=2.4e-06  Score=58.55  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      ..++-|+|.||||+||+|.|+.|+..++...   ++.++++.
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h---IstGdllR   65 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH---LSSGDLLR   65 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE---ECHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCce---EcHHHHHH
Confidence            3455688899999999999999999997553   44444443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.05  E-value=1.9e-06  Score=55.54  Aligned_cols=25  Identities=36%  Similarity=0.597  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|+|+|||||||||+++.+ ..++..
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~   27 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAK   27 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence            4789999999999999999 776654

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.05  E-value=2.8e-06  Score=56.97  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +.-+.|.||+||||||+++.+++.++
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44588999999999999999999887

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.05  E-value=2.4e-06  Score=56.15  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=22.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .|+|.|+|||||||+++.++..++.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~   27 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999998873

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.05  E-value=9.4e-07  Score=61.57  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=26.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHH--hcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQM--LNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~--~~~~~~~~   85 (121)
                      +....-+.|.||+|+||||+++++++.  +.+..+.+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I   62 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI   62 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence            344555889999999999999999997  44433443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.05  E-value=2.9e-06  Score=56.96  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.|+|++||||||+++.++..++.+
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~~   39 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGAH   39 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            48899999999999999999987754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.04  E-value=5.1e-06  Score=54.64  Aligned_cols=22  Identities=36%  Similarity=0.522  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy3632          57 ILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++|.|++||||||+++.++..+
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999988

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.04  E-value=7.7e-06  Score=59.24  Aligned_cols=32  Identities=19%  Similarity=0.332  Sum_probs=25.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |+.....++|+||||||||+++..+|...+..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~  150 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGK  150 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCC
Confidence            44555668999999999999999999875444

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.03  E-value=2.6e-06  Score=55.91  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|.|++||||||+++.++..++..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~   33 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            3468899999999999999999988754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.03  E-value=3.1e-06  Score=54.66  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+|.|++||||||+++.++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~   27 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIP   27 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            37899999999999999999998865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.03  E-value=1.6e-06  Score=60.78  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +..+..+.|.||+|+|||||++++++.+.. .+.+
T Consensus        35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I   76 (260)
T 2ghi_A           35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI   76 (260)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEE
T ss_pred             eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEE
Confidence            344433  344555889999999999999999998764 4555

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.03  E-value=2.2e-06  Score=58.39  Aligned_cols=28  Identities=21%  Similarity=0.504  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|.|+|||||||+++.++..++..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~   34 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFELK   34 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence            3468999999999999999999988754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.03  E-value=1.7e-06  Score=56.60  Aligned_cols=28  Identities=32%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ..|+|+|+|||||||+++.++..++.++
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~~~~   33 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPGSF   33 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence            4588999999999999999999988663

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.03  E-value=2.4e-06  Score=57.98  Aligned_cols=34  Identities=24%  Similarity=0.538  Sum_probs=27.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      ++|.||||+||+|.|+.||..++...   ++.++++.
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g~~~---istGdllR   36 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKGFVH---ISTGDILR   36 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEE---EEHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeE---EcHHHHHH
Confidence            78899999999999999999997653   44455443

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.02  E-value=1.5e-06  Score=61.21  Aligned_cols=34  Identities=18%  Similarity=0.331  Sum_probs=26.1

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +++++.+  ..+.-+.|.||+|+|||||++++++..
T Consensus        35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444443  444558899999999999999999973

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.02  E-value=6e-06  Score=66.30  Aligned_cols=36  Identities=25%  Similarity=0.482  Sum_probs=27.7

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh---cCCCCeeecCccc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML---NAREPKIVNGPQV   91 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~---~~~~~~~~~~~~~   91 (121)
                      ..++|+||||||||++|++++..+   +.+++. ++++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~-i~~~~~  627 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR-IDMTEY  627 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEE-ECTTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEE-Eechhc
Confidence            479999999999999999999998   444333 444443

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.02  E-value=1.8e-06  Score=60.67  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=28.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+. ...+.+.||+|+||||+++++++.+ +..+.+.
T Consensus        27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~   61 (263)
T 2pjz_A           27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIF   61 (263)
T ss_dssp             EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEE
T ss_pred             EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEE
Confidence            344 4558899999999999999999998 7766653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.01  E-value=2.9e-06  Score=62.31  Aligned_cols=41  Identities=27%  Similarity=0.364  Sum_probs=31.8

Q ss_pred             HHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC-CCee
Q psy3632          45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR-EPKI   85 (121)
Q Consensus        45 ~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~-~~~~   85 (121)
                      .+.++.+.+...++++||+|+||||+++++++.+... .+.+
T Consensus       127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I  168 (372)
T 2ewv_A          127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI  168 (372)
T ss_dssp             SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred             HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence            4555556666679999999999999999999988654 3443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.01  E-value=3.3e-06  Score=58.37  Aligned_cols=29  Identities=17%  Similarity=0.235  Sum_probs=25.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+..|+|+|||||||||+++.++..++..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~   56 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYC   56 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            45569999999999999999999988654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.01  E-value=4e-06  Score=56.51  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.-++|+||+|+||||+++.++..+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            445889999999999999999998754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.01  E-value=1.3e-05  Score=58.04  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ..+.-++|+||+|+||||+++.+|+.+....+.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V  160 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV  160 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            3455688999999999999999999987665554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.01  E-value=4.1e-06  Score=56.02  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=25.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      +.-|+|.|++||||||+++.++..++...+
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~   39 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNV   39 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            445889999999999999999998876543

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.00  E-value=3.7e-06  Score=55.05  Aligned_cols=23  Identities=26%  Similarity=0.559  Sum_probs=19.1

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQ   73 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~   73 (121)
                      +..+.-++++|||||||||++++
T Consensus         6 i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            6 IPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EESSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHH
Confidence            34455688999999999999994

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.00  E-value=2.9e-06  Score=57.45  Aligned_cols=27  Identities=26%  Similarity=0.473  Sum_probs=24.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..|+|.|+|||||||+++.+|..++..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~~   32 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGLA   32 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence            358899999999999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.00  E-value=4.6e-06  Score=55.93  Aligned_cols=28  Identities=18%  Similarity=0.477  Sum_probs=24.1

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..+.-++|+||||+||||+++.++..++
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            3455689999999999999999999874

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.00  E-value=3.8e-06  Score=55.45  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -++|.||||+||||+++.+++..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            47899999999999999999854

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.00  E-value=4.4e-06  Score=55.38  Aligned_cols=26  Identities=27%  Similarity=0.558  Sum_probs=23.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+|.|++||||||+++.++..++..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~   27 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYE   27 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCc
Confidence            37899999999999999999998764

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.99  E-value=4.8e-06  Score=55.52  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=24.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .-|+|.|+|||||||+++.++..++..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            358899999999999999999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.99  E-value=1.3e-06  Score=62.28  Aligned_cols=41  Identities=27%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.+.  .+.-+.|.||+|+||||+++++++.+.+..+.+
T Consensus        53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I   95 (290)
T 2bbs_A           53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI   95 (290)
T ss_dssp             SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred             EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            44444444  344588999999999999999999886654544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.99  E-value=2.5e-06  Score=64.97  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=27.1

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+..++|+||+|+||||+++.|++.+....+.+
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V  324 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSV  324 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence            344588999999999999999999987655554

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.98  E-value=4.6e-06  Score=55.82  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=25.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      +.-|+|.|++||||||+++.++..++...+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~   39 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHR   39 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence            4568999999999999999999988655433

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.98  E-value=4e-06  Score=57.35  Aligned_cols=27  Identities=30%  Similarity=0.512  Sum_probs=24.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..|+|.|+|||||||+++.||..++..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~~~   43 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFCVC   43 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            468999999999999999999998754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.98  E-value=6.2e-06  Score=60.37  Aligned_cols=28  Identities=32%  Similarity=0.684  Sum_probs=25.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ..++|+||+|+||||+++++|+.++.++
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3599999999999999999999987664

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.97  E-value=5.1e-06  Score=56.81  Aligned_cols=29  Identities=14%  Similarity=0.222  Sum_probs=24.4

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+.-++|.||+|+|||||++++++...+
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            44556889999999999999999998763

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=97.97  E-value=1.6e-06  Score=67.32  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=23.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+++|+||||||||++|+++|..++.
T Consensus       327 ~~~vLL~GppGtGKT~LAr~la~~~~r  353 (595)
T 3f9v_A          327 DIHILIIGDPGTAKSQMLQFISRVAPR  353 (595)
T ss_dssp             SCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred             CcceEEECCCchHHHHHHHHHHHhCCC
Confidence            347999999999999999999998753

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.96  E-value=4.3e-06  Score=56.42  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+|.|+|||||||+++.++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~   27 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIP   27 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            37899999999999999999988754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.96  E-value=6.4e-06  Score=54.26  Aligned_cols=29  Identities=31%  Similarity=0.522  Sum_probs=24.9

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+..++|.|++|+||||+++.++..+...
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            34568899999999999999999998654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.96  E-value=5.4e-06  Score=55.85  Aligned_cols=30  Identities=33%  Similarity=0.298  Sum_probs=25.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++..+..++++||||+||||+++.++....
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            456666789999999999999999997653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.96  E-value=4.2e-06  Score=55.80  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|+|.|++||||||+++.++..++..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~   42 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKDYSFV   42 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence            3458899999999999999999988753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.95  E-value=2.5e-06  Score=58.23  Aligned_cols=28  Identities=25%  Similarity=0.248  Sum_probs=17.5

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHH-HHh
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIG-QML   78 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la-~~~   78 (121)
                      +..+.-+.|+||+||||||+++.++ +.+
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3445558899999999999999999 876

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.95  E-value=8.1e-06  Score=58.46  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +..++++||+||||||+++.+|+.+.+..+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V  133 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV  133 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence            44588999999999999999999987765554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.95  E-value=5.2e-06  Score=64.10  Aligned_cols=43  Identities=19%  Similarity=0.345  Sum_probs=33.7

Q ss_pred             HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+++++.+  +++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus       357 ~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~  401 (582)
T 3b5x_A          357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC  401 (582)
T ss_pred             cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence            34555444  44555899999999999999999999988777764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.94  E-value=5.8e-06  Score=60.47  Aligned_cols=30  Identities=27%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+...++++||+||||||+++++++.+...
T Consensus       121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            344468899999999999999999988654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.94  E-value=2.1e-05  Score=54.75  Aligned_cols=24  Identities=33%  Similarity=0.681  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .-|+|+|+|||||||+++.++..+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            458899999999999999999984

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.94  E-value=7.4e-06  Score=56.88  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=23.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ...+.|.||+||||||+++.+|..++.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~   53 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNW   53 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            345889999999999999999977664

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.93  E-value=7.6e-06  Score=55.28  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +....++-++|+||+|+||||++++|++...
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3333455688999999999999999998865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.93  E-value=4e-06  Score=61.29  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.+.....++++||+|+||||+++++++.+....+.+
T Consensus       170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I  206 (361)
T 2gza_A          170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI  206 (361)
T ss_dssp             HHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred             HHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence            3445666799999999999999999999987765554

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.92  E-value=2.8e-06  Score=57.73  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ....+.|.||+|||||||++++++. .+..+.+
T Consensus        21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I   52 (208)
T 3b85_A           21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV   52 (208)
T ss_dssp             HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence            3455889999999999999999998 6555553

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.91  E-value=1.8e-05  Score=54.29  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=24.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.-++|.||+||||||+++.++..+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            445889999999999999999999976

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.91  E-value=1.1e-05  Score=54.39  Aligned_cols=29  Identities=28%  Similarity=0.300  Sum_probs=25.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...+..+++.|++|+||||+++.++..++
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34456688999999999999999999886

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.90  E-value=9e-06  Score=58.41  Aligned_cols=29  Identities=24%  Similarity=0.181  Sum_probs=24.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..+.-+.|.||+||||||++++|++.+..
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            34455889999999999999999999865

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.90  E-value=9.1e-06  Score=53.20  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +..++|+|++||||||+++.++..+
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4458899999999999999999987

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.90  E-value=5.7e-06  Score=56.32  Aligned_cols=26  Identities=27%  Similarity=0.563  Sum_probs=23.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .++|.|+|||||||+++.++..++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~   27 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLA   27 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            37899999999999999999988743

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.89  E-value=1.6e-05  Score=59.32  Aligned_cols=32  Identities=38%  Similarity=0.386  Sum_probs=26.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...++++||+|+||||+++++++.+....+.+
T Consensus       167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I  198 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNI  198 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence            34478999999999999999999997765544

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.89  E-value=4.9e-06  Score=64.23  Aligned_cols=42  Identities=24%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus       358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~  401 (582)
T 3b60_A          358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL  401 (582)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence            444443  344555999999999999999999999987766653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.89  E-value=7e-06  Score=57.82  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=22.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .+++.||+|+||||++++|++...+..+
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G   31 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA   31 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            4889999999999999999998865443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.89  E-value=8.9e-06  Score=54.03  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +..|+|.|++||||||+++.++..+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3458899999999999999999987

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.88  E-value=8.3e-06  Score=54.26  Aligned_cols=26  Identities=27%  Similarity=0.509  Sum_probs=23.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.|.|++||||||+++.+|..++.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~   29 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVP   29 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            58899999999999999999998855

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.87  E-value=4.1e-06  Score=60.58  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=29.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +.....++++||+|+||||+++++++.+.+..+.+
T Consensus       168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i  202 (330)
T 2pt7_A          168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII  202 (330)
T ss_dssp             HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE
Confidence            34456799999999999999999999988766654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.86  E-value=4.9e-06  Score=64.49  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .++++..+.++||+|+||||+++++++.+.+..+.+...+
T Consensus       377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g  416 (598)
T 3qf4_B          377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG  416 (598)
T ss_dssp             ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECC
Confidence            3444556999999999999999999999988777764333

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.86  E-value=7.9e-06  Score=56.53  Aligned_cols=28  Identities=36%  Similarity=0.588  Sum_probs=24.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..+.+.||+||||||+++.++..++..
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~   36 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGAR   36 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3458899999999999999999998754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.85  E-value=1.2e-05  Score=53.79  Aligned_cols=27  Identities=37%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ++....-++++||||+||||+++.++.
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            466667799999999999999999998

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.85  E-value=1.2e-05  Score=61.07  Aligned_cols=36  Identities=17%  Similarity=0.075  Sum_probs=30.0

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.. ..+.|.||+||||||+++++++.+.+..+.+.
T Consensus        26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~   61 (483)
T 3euj_A           26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN   61 (483)
T ss_dssp             ECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred             EEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence            3455 57889999999999999999999988766653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.84  E-value=1.4e-05  Score=59.96  Aligned_cols=41  Identities=15%  Similarity=0.256  Sum_probs=32.1

Q ss_pred             HHHHHhCCCCCc--cEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          44 EVVEQLGCQHVK--GILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        44 ~~~~~~~~~~~~--~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ..++.+ ++..+  .+.|.||+|||||||+++|++......+.+
T Consensus       146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i  188 (438)
T 2dpy_A          146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  188 (438)
T ss_dssp             HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred             eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence            455555 55544  488999999999999999999988776554

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.84  E-value=1.4e-05  Score=53.56  Aligned_cols=29  Identities=28%  Similarity=0.290  Sum_probs=24.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.-+.+.|++||||||+++.+++.+...
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~   49 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            34458899999999999999999987543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.84  E-value=1.7e-05  Score=56.67  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=23.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +.-+.|.||+||||||+++++++.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34588999999999999999999887

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.83  E-value=1.2e-05  Score=53.32  Aligned_cols=27  Identities=22%  Similarity=0.167  Sum_probs=22.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..|.|+|++||||||+++.++.. +..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-g~~   34 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-GYP   34 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-TCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-CCE
Confidence            345889999999999999999997 433

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.83  E-value=1.3e-05  Score=53.61  Aligned_cols=24  Identities=38%  Similarity=0.791  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.++||+|+||||+++.+++.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            478999999999999999999885

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.83  E-value=3.9e-06  Score=64.81  Aligned_cols=42  Identities=14%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus       356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~  399 (578)
T 4a82_A          356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL  399 (578)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred             ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence            344433  344555899999999999999999999988766663

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.83  E-value=4e-05  Score=55.82  Aligned_cols=51  Identities=20%  Similarity=0.235  Sum_probs=36.0

Q ss_pred             ccCCcHHHHHHHHHHHh-hccCCChHHHHHhCC-CCCccEEE--EcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAF-ASRVFPPEVVEQLGC-QHVKGILL--YGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i-~~~~~~~~~~~~~~~-~~~~~vll--~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.|-+++++++ ...+ .....        +. ..+..+++  +||+|+|||++++.+++.+.
T Consensus        23 ~l~gR~~el~~l-~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           23 ELRVRRGEAEAL-ARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             SCSSSCHHHHHH-HHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHH-HHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            588999988887 4333 21110        10 23456888  99999999999999998874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.83  E-value=1.3e-05  Score=56.61  Aligned_cols=33  Identities=24%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +++.+..-++|.||||+||||+++.+|..+...
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            466667779999999999999999999987654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.82  E-value=1.1e-05  Score=54.79  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=24.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +++...-++|+||||+|||++++.++..
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            5666677999999999999999999985

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.81  E-value=1.1e-05  Score=54.08  Aligned_cols=25  Identities=28%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +.-+.++|++||||||+++.+++.+
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3457899999999999999999976

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.80  E-value=2e-05  Score=60.22  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=27.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ..+.++++.||+||||||+++++++.+......
T Consensus       258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gi  290 (511)
T 2oap_1          258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKV  290 (511)
T ss_dssp             HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCE
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCE
Confidence            456679999999999999999999998765444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.79  E-value=8.1e-06  Score=62.29  Aligned_cols=36  Identities=33%  Similarity=0.527  Sum_probs=27.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHH--HHHHhcCCCCee
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQ--IGQMLNAREPKI   85 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~--la~~~~~~~~~~   85 (121)
                      ++.....++|.|||||||||+++.  +++...+..+.+
T Consensus        35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i   72 (525)
T 1tf7_A           35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGV   72 (525)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            445666799999999999999999  667765443443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.78  E-value=1.6e-05  Score=57.90  Aligned_cols=29  Identities=17%  Similarity=0.486  Sum_probs=25.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ...+.|+||+|||||||+++|++.+....
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            44589999999999999999999987765

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.78  E-value=6.8e-06  Score=63.60  Aligned_cols=36  Identities=14%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      ++++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  401 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE  401 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence            344555999999999999999999999988777663

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.78  E-value=2.3e-05  Score=56.23  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      ..+.-++++||+|+||||++..+|..+.....
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~  133 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK  133 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence            34556889999999999999999998865433

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.77  E-value=1.5e-05  Score=53.25  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -|+|+||+|+||||+++.+.....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            388999999999999999987754

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.76  E-value=1.9e-05  Score=56.83  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=24.5

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+..++|+||+|+|||++++++|+.+..
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~   50 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYLLC   50 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence            3456999999999999999999998754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.76  E-value=1.7e-05  Score=54.82  Aligned_cols=28  Identities=25%  Similarity=0.240  Sum_probs=24.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.-|.|.|++||||||+++.++..++.+
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~   49 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence            3458899999999999999999988754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.75  E-value=1.5e-05  Score=53.74  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..|.|.|++||||||+++.++. ++..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~-lg~~   30 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD-LGIN   30 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-cCCE
Confidence            4588999999999999999998 5543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.75  E-value=9.8e-06  Score=57.66  Aligned_cols=28  Identities=32%  Similarity=0.395  Sum_probs=24.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.-+.+.||+||||||+++.++..+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            3455889999999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.75  E-value=1.7e-05  Score=60.83  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=28.2

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      +.+...+.|+||+|||||||++++++.+.+..+.
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            3445568999999999999999999988766555

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.75  E-value=5.5e-05  Score=65.49  Aligned_cols=40  Identities=23%  Similarity=0.295  Sum_probs=32.5

Q ss_pred             ChHHHHHhC---CCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          42 PPEVVEQLG---CQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        42 ~~~~~~~~~---~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.+..-++   ++.+.+++|+||||||||++|.+++......
T Consensus      1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A         1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp             CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            355555566   8888899999999999999999998876544

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.75  E-value=6.1e-05  Score=53.58  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=34.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.|-+.+++.+ .. +..                ..++++||+|+|||++++.++......
T Consensus        14 ~~~gR~~el~~L-~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~   57 (357)
T 2fna_A           14 DFFDREKEIEKL-KG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLP   57 (357)
T ss_dssp             GSCCCHHHHHHH-HH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             HhcChHHHHHHH-HH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            577888887776 32 321                369999999999999999999987654

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.72  E-value=1.8e-05  Score=59.73  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=26.6

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.+..+..++|.||+|||||||+|+|++.+..
T Consensus       133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p  164 (460)
T 2npi_A          133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK  164 (460)
T ss_dssp             HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred             eEeCCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence            44555667999999999999999999998743

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.71  E-value=3.1e-05  Score=50.60  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -.+|+||+||||||++++|+..++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~~~   53 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLGGL   53 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            46789999999999999999887643

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.71  E-value=2.5e-05  Score=56.92  Aligned_cols=41  Identities=17%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             HHHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          44 EVVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        44 ~~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...+.+ ++.  +..+.|.||+|+||||+++.|++......+.+
T Consensus        60 ~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i  102 (347)
T 2obl_A           60 RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL  102 (347)
T ss_dssp             HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred             EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence            344444 444  34488999999999999999999988765443

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.70  E-value=2.1e-05  Score=53.82  Aligned_cols=28  Identities=25%  Similarity=0.404  Sum_probs=24.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..+.|.|++||||||+++.++..++..
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~   43 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFGFT   43 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            4458899999999999999999988744

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.70  E-value=2.1e-05  Score=55.10  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=25.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++....-++|+||||+||||+++.++..+.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            556666799999999999999999998664

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.70  E-value=3.8e-05  Score=55.65  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=28.9

Q ss_pred             HHHHhCCC--CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          45 VVEQLGCQ--HVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        45 ~~~~~~~~--~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      +++.+.+.  ....+.|.||||+||||+++++++.+....+.
T Consensus        44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~   85 (337)
T 2qm8_A           44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHK   85 (337)
T ss_dssp             HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCE
Confidence            44454433  34458899999999999999999887544333

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.69  E-value=3.1e-05  Score=55.93  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=22.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      -+.|.||+||||||++++++..+..
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4889999999999999999999863

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.68  E-value=2.6e-05  Score=56.38  Aligned_cols=27  Identities=33%  Similarity=0.546  Sum_probs=24.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..++++||+|||||++++.+|..++..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~   32 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCE   32 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            468899999999999999999998744

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.68  E-value=1.5e-05  Score=61.27  Aligned_cols=33  Identities=33%  Similarity=0.409  Sum_probs=28.2

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...-+.|.||+||||||++++|++.+.+..+.+
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i  325 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGEITADEGSV  325 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            344588999999999999999999988776665

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.68  E-value=9.3e-06  Score=54.32  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |+|.|++||||||+++.|+..++.
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHh
Confidence            789999999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.65  E-value=1.8e-05  Score=60.73  Aligned_cols=32  Identities=28%  Similarity=0.392  Sum_probs=26.6

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      .+..+.|.||+|||||||+++|++.+.+..+.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~  342 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK  342 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            34558899999999999999999988765444

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.65  E-value=2.7e-05  Score=60.64  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=28.2

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.-+.|.||+|+||||++++|++.+.+..+.+
T Consensus       102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            344588999999999999999999988877664

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.63  E-value=3.4e-05  Score=52.40  Aligned_cols=29  Identities=38%  Similarity=0.477  Sum_probs=23.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |+..+.-+++.||||+|||+++..++...
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            56667779999999999999988776654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.62  E-value=2.1e-05  Score=61.20  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=27.0

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      .+.-+.|.||+|+|||||+++|++.+.+..+.+
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I  413 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV  413 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            344588999999999999999999887655543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.62  E-value=3.5e-05  Score=54.30  Aligned_cols=24  Identities=42%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .-+++.|+|||||||+++.++..+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC
Confidence            358899999999999999999863

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.62  E-value=2.7e-05  Score=57.91  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=23.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.-++++|+|||||||+++.++..++..
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~~~~~  285 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVSAGYV  285 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhcCcE
Confidence            3448889999999999999999887643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.62  E-value=2.6e-05  Score=59.85  Aligned_cols=30  Identities=17%  Similarity=0.145  Sum_probs=26.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      -+.|.||+|+||||++++|++.+.+..+.+
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            488999999999999999999987776653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.62  E-value=3.1e-05  Score=52.08  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=23.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+.|+|++||||||+++.++..++.+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g~~   30 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELSMI   30 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence            358899999999999999999988754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.61  E-value=5.5e-05  Score=54.10  Aligned_cols=25  Identities=12%  Similarity=0.082  Sum_probs=22.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...++|+||+|+|||++++++|+.+
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            3479999999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.60  E-value=0.00017  Score=51.15  Aligned_cols=44  Identities=18%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.|-+..++.+ .+.+.          . +    ..++++||+|+|||++++.++...+
T Consensus        13 ~~~gR~~el~~L-~~~l~----------~-~----~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           13 DIFDREEESRKL-EESLE----------N-Y----PLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             GSCSCHHHHHHH-HHHHH----------H-C----SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             hcCChHHHHHHH-HHHHh----------c-C----CeEEEECCCcCCHHHHHHHHHHHcC
Confidence            578888888877 33332          1 1    4699999999999999999998764

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.60  E-value=3.6e-05  Score=56.02  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=25.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +++...-+.|+||||+||||+++.++...
T Consensus       127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          127 GIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45556668899999999999999999987

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.59  E-value=1.6e-05  Score=52.47  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.++|++||||||+++.+++.+...
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            47899999999999999999998765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.58  E-value=3.2e-05  Score=59.59  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      ..+..+.|+|++||||||++++|++.+....+
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G  398 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGG  398 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence            34556889999999999999999999976543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.58  E-value=3.4e-05  Score=60.01  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ..+..+.|.||+|+||||+++++++.+.+..+.
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            344558899999999999999999988776655

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.57  E-value=4e-05  Score=56.08  Aligned_cols=31  Identities=19%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |++...-++++||||+||||++..++..+..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3566666889999999999999999987643

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.55  E-value=1.7e-05  Score=54.68  Aligned_cols=30  Identities=20%  Similarity=0.153  Sum_probs=25.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      ++|+||+||||||++++|+..+.+..+.+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~   59 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLH   59 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCCTTTC-
T ss_pred             EEEECCCCCCHHHHHHHHhcccccCCCeEE
Confidence            567899999999999999999987766543

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.53  E-value=4.2e-05  Score=53.94  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .-|+|+|++||||||+++.++ .++..
T Consensus        76 ~iI~I~G~~GSGKSTva~~La-~lg~~  101 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK-NLGAY  101 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH-HHTCE
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCc
Confidence            358899999999999999999 45543

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.51  E-value=5.2e-05  Score=56.50  Aligned_cols=29  Identities=21%  Similarity=0.363  Sum_probs=24.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      .+.|.||+|+||||+++++++...+..+.
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~Gs   99 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGA   99 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCce
Confidence            58899999999999999999976555444

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.51  E-value=0.00012  Score=49.79  Aligned_cols=28  Identities=29%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .-|+|.|++|+||||+++.++..+....
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~   34 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRERG   34 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence            3478899999999999999999987543

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.50  E-value=6.5e-05  Score=51.86  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=24.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .+.|.|||||||||+++.|+..++...
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~   36 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQ   36 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCe
Confidence            478999999999999999999997653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.49  E-value=4.3e-05  Score=54.41  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=24.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ..-+.+.||||+||||+++++++...+..+.+
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i  200 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  200 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             CCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence            34488999999999999999999876655443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.49  E-value=8.9e-05  Score=53.15  Aligned_cols=23  Identities=39%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -++++|++|+||||+++.+++..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            47899999999999999999875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.48  E-value=7.1e-05  Score=54.47  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=22.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .-+++.||+|+|||++++.||..++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            3588999999999999999999986

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.48  E-value=9.4e-05  Score=48.84  Aligned_cols=25  Identities=24%  Similarity=0.239  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .-+++.|++|+||||+++.+...+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            4588999999999999999998764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.47  E-value=0.00018  Score=56.23  Aligned_cols=29  Identities=24%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh---cCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML---NARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~---~~~~   82 (121)
                      +..|+|+|.+||||||++++++..+   +.++
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~   83 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC   83 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            3458899999999999999999998   5553

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.47  E-value=6.4e-05  Score=50.59  Aligned_cols=27  Identities=22%  Similarity=0.252  Sum_probs=24.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      -|.+.|++|||||++++.+|..++.++
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg~~~   34 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYNIPL   34 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCE
Confidence            488999999999999999999998774

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.47  E-value=4e-05  Score=64.11  Aligned_cols=42  Identities=14%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+||||||+++++++.+.+..+.+.
T Consensus       405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~  448 (1284)
T 3g5u_A          405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS  448 (1284)
T ss_dssp             SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEE
T ss_pred             ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            444443  444556999999999999999999999988767663

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.46  E-value=6.4e-05  Score=50.97  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..+++|.||+|+|||+++..++....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            45699999999999999999998754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.46  E-value=6.8e-05  Score=56.10  Aligned_cols=29  Identities=21%  Similarity=0.203  Sum_probs=23.2

Q ss_pred             hCCCCCcc--EEEEcCCCCcHHHHHHHHHHH
Q psy3632          49 LGCQHVKG--ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        49 ~~~~~~~~--vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +.+..+..  ++|+||+|+|||||+++|++.
T Consensus        35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             eEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            34444555  889999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.45  E-value=4.5e-05  Score=63.96  Aligned_cols=42  Identities=17%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+||||||+++++.+.+.+..+.+.
T Consensus       433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~  476 (1321)
T 4f4c_A          433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT  476 (1321)
T ss_dssp             SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE
T ss_pred             eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCccc
Confidence            344443  444556999999999999999999999988777763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.43  E-value=3.9e-05  Score=64.34  Aligned_cols=42  Identities=19%  Similarity=0.402  Sum_probs=33.5

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +++++.  ++++..+.++||+||||||+++++.+.+.+..+.+.
T Consensus      1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1137 (1321)
T 4f4c_A         1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF 1137 (1321)
T ss_dssp             SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE
T ss_pred             cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEE
Confidence            444443  445556999999999999999999999988877763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.43  E-value=6.9e-05  Score=54.50  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=23.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .-++|+||+|+|||+++..||..++.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~   66 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPL   66 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence            35889999999999999999998863

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.42  E-value=8.5e-05  Score=54.11  Aligned_cols=29  Identities=31%  Similarity=0.407  Sum_probs=24.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++...-++++||||+|||+++..++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45556669999999999999999988765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.42  E-value=3.8e-05  Score=59.83  Aligned_cols=27  Identities=30%  Similarity=0.544  Sum_probs=24.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      +.|.||+|+|||||+++|++.+.+..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p~~G  407 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKPDEG  407 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence            789999999999999999999876654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.41  E-value=3.7e-05  Score=54.57  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -|.+.||+||||||+++.++..++
T Consensus         7 iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            7 IISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            488999999999999999999876

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.41  E-value=0.00011  Score=52.35  Aligned_cols=27  Identities=30%  Similarity=0.465  Sum_probs=23.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +..++++||+|+||||++..+|..+..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456889999999999999999998864

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.40  E-value=0.0001  Score=52.58  Aligned_cols=31  Identities=23%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      ...+.|.||||+||||++++++ ...+..+.+
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i  195 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GEELRTQEV  195 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence            3458899999999999999999 776554443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.40  E-value=0.00012  Score=52.69  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=26.3

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ..+..++++||+|+||||++..+|..+......
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~k  135 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK  135 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence            345568899999999999999999988654333

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.38  E-value=0.00024  Score=50.47  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      ..+..++++|++|+||||++..+|..+......
T Consensus        96 ~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~  128 (295)
T 1ls1_A           96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR  128 (295)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            334557789999999999999999988654333

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.38  E-value=9.2e-05  Score=54.22  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=24.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc-CCCCe
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN-AREPK   84 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~-~~~~~   84 (121)
                      ..+.|.||||+|||||+++|++... ...+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~  246 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTND  246 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCC
Confidence            3588999999999999999998876 54444

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.38  E-value=0.00011  Score=48.52  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+++.|++|+|||||++.+++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            488999999999999999998653

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.38  E-value=8.8e-05  Score=55.04  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      |+....-++|+||||||||||++.++-
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~  200 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAV  200 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence            566666699999999999999997653

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.37  E-value=0.00012  Score=52.65  Aligned_cols=27  Identities=37%  Similarity=0.650  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.-++++||+|+|||+++..+|..++.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~   36 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPV   36 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence            345789999999999999999998764

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.36  E-value=0.00032  Score=52.42  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=26.0

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      .+..++++|++|+||||++..+|..+......
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~  128 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR  128 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            45568889999999999999999998655333

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.36  E-value=0.00012  Score=48.35  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+++.|++|+|||||++.+++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999999863

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.36  E-value=2.8e-05  Score=63.43  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=28.9

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      ..+..+.|.||+|+|||||+++|++.+.+..+.+.
T Consensus       697 ~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~  731 (986)
T 2iw3_A          697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY  731 (986)
T ss_dssp             ETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            34445889999999999999999999877766653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.35  E-value=0.00012  Score=52.80  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      -+++.||+|+|||+++..+|..++.
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~~~   29 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRLNG   29 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred             EEEEECCCcCCHHHHHHHHHHhCcc
Confidence            4788999999999999999998753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.35  E-value=0.00014  Score=47.83  Aligned_cols=25  Identities=16%  Similarity=0.029  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+.+.|++|+||||++..++..+..
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhHh
Confidence            4789999999999999999988753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.35  E-value=8e-05  Score=50.81  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +.-+.|.|++|+||||+++.+++.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            345889999999999999999987

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.33  E-value=7.3e-05  Score=62.55  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      +.++..+.++||+|+||||+++++++.+.+..+.+.
T Consensus      1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A         1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp             ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            344555999999999999999999999877766653

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.33  E-value=0.00014  Score=55.63  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +.-|+++|.||+||||+++.++..++..+
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~   63 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIG   63 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            34588999999999999999999986554

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.32  E-value=0.00033  Score=52.46  Aligned_cols=26  Identities=31%  Similarity=0.500  Sum_probs=22.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+++.|++|||||+++.+++..+...
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~   72 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALIST   72 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999887543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.31  E-value=0.0002  Score=51.90  Aligned_cols=29  Identities=21%  Similarity=0.240  Sum_probs=24.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++...-++++||||+|||+++..+|...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56666668999999999999999999863

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.29  E-value=0.00015  Score=49.18  Aligned_cols=27  Identities=41%  Similarity=0.458  Sum_probs=22.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      |+++..-+++.|+||+|||++|..+|.
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            567777799999999999999887654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.28  E-value=0.00016  Score=48.01  Aligned_cols=24  Identities=21%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++|.|+||+||||++..+...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            568999999999999999988874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.28  E-value=5.9e-05  Score=50.06  Aligned_cols=30  Identities=13%  Similarity=0.142  Sum_probs=24.2

Q ss_pred             hCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          49 LGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        49 ~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +.+.....+++.|++|+|||||++++++..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            555556669999999999999999988755

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.27  E-value=0.00016  Score=51.90  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=24.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++...-++++||||+|||+++..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            56666678999999999999999999865

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.27  E-value=0.00018  Score=52.57  Aligned_cols=29  Identities=28%  Similarity=0.419  Sum_probs=24.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++....++++|+||+|||++|..++...
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36667779999999999999999988765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.27  E-value=0.00017  Score=55.16  Aligned_cols=26  Identities=8%  Similarity=-0.000  Sum_probs=23.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..|.|.|.+||||||++++||..++.
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             eEEEecccCCCCHHHHHHHHHHHHHH
Confidence            45889999999999999999999985

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=97.27  E-value=0.00012  Score=49.77  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|.|+|..||||||+++.++. ++.+
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g~~   35 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RGAS   35 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence            488999999999999999987 6654

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.26  E-value=0.00019  Score=53.44  Aligned_cols=26  Identities=35%  Similarity=0.571  Sum_probs=22.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .-+++.||+|+|||+++..+|..++.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~   28 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNG   28 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCC
Confidence            34789999999999999999998864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.25  E-value=0.00018  Score=49.21  Aligned_cols=25  Identities=12%  Similarity=0.276  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..|++.|++|+||||+++.++..+.
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3588999999999999999999884

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.25  E-value=0.00021  Score=53.52  Aligned_cols=28  Identities=32%  Similarity=0.411  Sum_probs=23.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.-++++||+|+||||++..+|..+...
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~  124 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR  124 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4568889999999999999999887544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.23  E-value=0.00019  Score=54.73  Aligned_cols=32  Identities=34%  Similarity=0.365  Sum_probs=27.1

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++.....+++.||||+||||+++.++......
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            55666678999999999999999999987653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.21  E-value=0.0003  Score=47.84  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=23.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .-|.|.|++|+||||.++.++..+...
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~   30 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQL   30 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            347889999999999999999988654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.20  E-value=0.00029  Score=48.65  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=24.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.-|+|.|++|+||||+++.++..+...
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            3458899999999999999999988654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.20  E-value=0.00025  Score=45.40  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -.+++||+|+|||+++.||.-.+
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999998655

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.19  E-value=4.9e-05  Score=54.57  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=21.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ....+.|.||||+|||||+++|++.....
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~  200 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISPELGLR  200 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHhccccccc
Confidence            34568899999999999999998876443

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.18  E-value=0.00022  Score=49.01  Aligned_cols=27  Identities=30%  Similarity=0.217  Sum_probs=20.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.-|+|.|++|+||||+++.++..+..
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            344888999999999999999998854

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.17  E-value=0.00035  Score=50.00  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=25.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |+.+..-+++.|+||+|||+++..+|....
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a   93 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKNMS   93 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            577777799999999999999999887653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.16  E-value=0.00021  Score=50.99  Aligned_cols=28  Identities=25%  Similarity=0.189  Sum_probs=23.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      |++...-++++||||+|||+++..+|..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4566666899999999999999999875

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.14  E-value=0.00027  Score=53.14  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +..|+++|.||+||||+++.++..++..+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~   67 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIG   67 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            34588999999999999999999876443

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.14  E-value=0.0002  Score=49.01  Aligned_cols=26  Identities=15%  Similarity=0.302  Sum_probs=23.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|.+.|++|||||++++.+|..++.+
T Consensus        16 iI~i~g~~gsGk~~i~~~la~~lg~~   41 (223)
T 3hdt_A           16 IITIEREYGSGGRIVGKKLAEELGIH   41 (223)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHcCCc
Confidence            47889999999999999999999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.13  E-value=0.00018  Score=58.81  Aligned_cols=24  Identities=29%  Similarity=0.567  Sum_probs=20.8

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+..+.|+||+|+|||||+++|++
T Consensus       460 ~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          460 RARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344588999999999999999995

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.13  E-value=0.00032  Score=52.09  Aligned_cols=30  Identities=30%  Similarity=0.432  Sum_probs=24.5

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+.-.+|+||+|+|||+++.+++..++..
T Consensus        24 ~~~~~~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A           24 GESNFTSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence            334558899999999999999999987654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.12  E-value=7.7e-05  Score=54.84  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=26.3

Q ss_pred             HHHHhCCCCCc-cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          45 VVEQLGCQHVK-GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        45 ~~~~~~~~~~~-~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .++.+.+.... -++|+||+|+||||++++|+..++
T Consensus        50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            34444444433 577999999999999999988876

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.12  E-value=0.00013  Score=50.71  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +.-|+|.|++|+||||+++.|+..+.
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34588999999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.11  E-value=0.00041  Score=51.99  Aligned_cols=30  Identities=33%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |+.++.-+++.|+||+|||+++..+|....
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567677799999999999999999988764

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.11  E-value=0.00027  Score=45.30  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+++.
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999874

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.09  E-value=0.00084  Score=59.73  Aligned_cols=36  Identities=33%  Similarity=0.423  Sum_probs=30.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      ..++++.||+|||||++++.+|+.++.+.+. +++.+
T Consensus       645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~-~nc~e  680 (2695)
T 4akg_A          645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVV-FNCDD  680 (2695)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHTTTCCCEE-EETTS
T ss_pred             CCCCcccCCCCCCcHHHHHHHHHHhCCcEEE-EECCC
Confidence            4578999999999999999999999998655 44443

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.09  E-value=0.00023  Score=46.46  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||+|++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999873

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.09  E-value=0.00035  Score=54.06  Aligned_cols=25  Identities=36%  Similarity=0.430  Sum_probs=22.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..|+|.|++||||||++++++..++
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhc
Confidence            4588999999999999999999987

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.09  E-value=0.00049  Score=46.93  Aligned_cols=27  Identities=33%  Similarity=0.267  Sum_probs=24.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.-|++.|++|+||||+++.++..+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            345889999999999999999999986

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.08  E-value=0.00037  Score=53.91  Aligned_cols=27  Identities=26%  Similarity=0.561  Sum_probs=23.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+++.||||||||+++.+++..+...
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~  231 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAESL  231 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            458899999999999999999876543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.08  E-value=0.00069  Score=50.93  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=23.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.-++++|++|+||||++..+|..+...
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~  127 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKR  127 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence            4568899999999999999999877544

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.06  E-value=0.00035  Score=51.20  Aligned_cols=29  Identities=31%  Similarity=0.382  Sum_probs=24.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++....++++||||+|||+++..++...
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            46666678999999999999999888765

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.05  E-value=0.00018  Score=55.94  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.++||+|+||||++++|++...+
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC--
T ss_pred             EEEECCCCChHHHHHHHHhCCCCC
Confidence            899999999999999999998644

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.03  E-value=0.00064  Score=45.50  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=22.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      |.|-|+-||||||.++.++..+....
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g   28 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRG   28 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence            67889999999999999999886543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.02  E-value=0.00039  Score=45.08  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999873

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.01  E-value=0.0005  Score=43.24  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999875

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.01  E-value=0.00053  Score=46.99  Aligned_cols=27  Identities=26%  Similarity=0.317  Sum_probs=23.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +.-|.|.|++|+||||+++.++..+..
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            345788999999999999999998865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.00  E-value=0.0005  Score=43.46  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -.+++.|++|+|||++++.+.+.
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            35899999999999999999874

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.00  E-value=0.00055  Score=49.70  Aligned_cols=26  Identities=38%  Similarity=0.680  Sum_probs=22.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...+.|+|+||+||||+.+++++.+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            34588999999999999999998653

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.97  E-value=0.00053  Score=46.12  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=18.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -++++|+||||||+.+..++..
T Consensus         7 i~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999998776444

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.00067  Score=44.19  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...++++|++|+|||+++..+.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4469999999999999999998753

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.96  E-value=0.0005  Score=53.62  Aligned_cols=24  Identities=42%  Similarity=0.588  Sum_probs=17.2

Q ss_pred             cEEEEcCCCCcHHHH-HHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLM-ARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l-~~~la~~~~   79 (121)
                      -.+++||||||||+. +.+++..+.
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~  231 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVK  231 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh
Confidence            368899999999975 455554443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.96  E-value=0.00054  Score=50.03  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -.+|+||+|+||||+..+|+-.+
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            36689999999999999998654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.96  E-value=0.00064  Score=45.27  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...++++|++|+|||+++..+.+..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3469999999999999999998764

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.96  E-value=0.00065  Score=49.69  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -.+|+||+|+|||+++++++....
T Consensus        28 ~~~i~G~nG~GKttll~ai~~~~~   51 (359)
T 2o5v_A           28 VTGIYGENGAGKTNLLEAAYLALT   51 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHhcc
Confidence            467899999999999999997553

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.96  E-value=0.00046  Score=44.64  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||||++.+++..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999998753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.96  E-value=0.00059  Score=42.94  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||+++..+...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.95  E-value=0.00061  Score=48.53  Aligned_cols=28  Identities=32%  Similarity=0.427  Sum_probs=23.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.-+++.|++|+||||++..+|..+...
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~  125 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK  125 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            4457789999999999999999887543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.94  E-value=0.00054  Score=43.00  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999999865

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.94  E-value=0.00058  Score=45.21  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=18.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -++++||+|+||||++..++..+
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47789999999999985555443

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.94  E-value=0.00064  Score=45.62  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=21.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .-.+|+||+|+|||+++.||.-.+..
T Consensus        24 ~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           24 GINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            34678999999999999999876653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.92  E-value=0.00065  Score=42.80  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35999999999999999999864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.92  E-value=0.00066  Score=44.67  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ....+++.|++|+|||+|++.+...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3456999999999999999998764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.91  E-value=0.00034  Score=49.81  Aligned_cols=22  Identities=18%  Similarity=0.378  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.||+|+|||||++.+++.
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999998865

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.91  E-value=0.00073  Score=50.46  Aligned_cols=30  Identities=23%  Similarity=0.133  Sum_probs=25.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |+.++.-+++.|+||+|||+++..+|....
T Consensus       196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          196 TLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             CCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            566666799999999999999998887653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.91  E-value=0.00068  Score=42.87  Aligned_cols=23  Identities=17%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+++.|++|+|||++++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999988643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.90  E-value=0.0007  Score=42.87  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+++.|++|+|||++++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            59999999999999999998754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.90  E-value=0.00043  Score=46.01  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++++|++|||||++|..++.. +.+
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~   25 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQ   25 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSS
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCC
Confidence            689999999999999999976 544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.89  E-value=0.00071  Score=43.27  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.89  E-value=0.00059  Score=54.71  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...++|+||+|+||||++|.++...
T Consensus       607 g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          607 RRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHH
Confidence            3458899999999999999999863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.89  E-value=0.00074  Score=42.83  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -.+++.|++|+|||++++.+.+.
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35999999999999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.89  E-value=0.00073  Score=43.28  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+.+.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45999999999999999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.88  E-value=0.00057  Score=43.57  Aligned_cols=23  Identities=35%  Similarity=0.560  Sum_probs=20.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -.+++.|++|+|||+|++.+.+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            35999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.87  E-value=0.00066  Score=42.99  Aligned_cols=22  Identities=18%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.87  E-value=0.00096  Score=42.31  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+++.|++|+|||+++..+...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            346999999999999999999763

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.86  E-value=0.0007  Score=42.87  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999998854

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.85  E-value=0.0013  Score=48.14  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=23.2

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...++++.||+|+|||++++.++..+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~   60 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY   60 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence            355799999999999999999988653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.85  E-value=0.00055  Score=51.23  Aligned_cols=26  Identities=35%  Similarity=0.521  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +..++++|++|+||||++..+|..+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45689999999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.85  E-value=0.00074  Score=45.10  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...++++|++|+||||++..++..+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34689999999999999999998764

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.85  E-value=0.00048  Score=51.37  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++|+|++|+|||||++.+++...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            79999999999999999998653

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.84  E-value=0.00079  Score=48.74  Aligned_cols=28  Identities=21%  Similarity=0.208  Sum_probs=21.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++.. -++++||||+|||+++-.++...
T Consensus        25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           25 GMQSG-LLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             CBCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CCcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            46655 57899999999999977666544

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.84  E-value=0.00082  Score=42.41  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.83  E-value=0.00081  Score=43.45  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+.+.
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999999864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.83  E-value=0.00084  Score=42.41  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.83  E-value=0.001  Score=48.10  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=22.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...+.+.|+||+||||+++.++..+.
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            44588999999999999999998763

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.83  E-value=0.00079  Score=53.75  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=22.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...++|+||+|+||||++|.++...
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            4558899999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.83  E-value=0.00049  Score=53.91  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             HHHhCCCC--CccEEEEcCCCCcHHHHH
Q psy3632          46 VEQLGCQH--VKGILLYGPPGTGKTLMA   71 (121)
Q Consensus        46 ~~~~~~~~--~~~vll~Gp~G~GKT~l~   71 (121)
                      ++++.++.  ..-+.|.||+|||||||+
T Consensus        34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             CCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             eeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            44444443  445889999999999997

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.81  E-value=0.00094  Score=42.71  Aligned_cols=24  Identities=21%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+++.|++|+|||++++.+.+.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346999999999999999998763

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.81  E-value=0.00064  Score=47.34  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..++|.|++|+||||+++++.+..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            358999999999999999998753

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.81  E-value=0.0019  Score=43.50  Aligned_cols=25  Identities=32%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      -|.|-|+.||||||.++.++..+..
T Consensus         4 FI~~EG~dGsGKsTq~~~L~~~L~~   28 (205)
T 4hlc_A            4 FITFEGPEGSGKTTVINEVYHRLVK   28 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHC
Confidence            4788999999999999999999854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.80  E-value=0.00087  Score=42.88  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -.+++.|++|+|||++++.+...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            35999999999999999998754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.80  E-value=0.00082  Score=51.67  Aligned_cols=26  Identities=35%  Similarity=0.486  Sum_probs=23.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..++|+|++|+||||+++.++..++.
T Consensus       373 ~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          373 FCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            45889999999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.80  E-value=0.00085  Score=42.55  Aligned_cols=21  Identities=33%  Similarity=0.661  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|++|+|||++++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999999864

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.80  E-value=0.0006  Score=55.41  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ....++|+||+|+||||++|.++..
T Consensus       672 ~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          672 SERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             SCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCchHHHHHHHHHH
Confidence            3455889999999999999998753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.79  E-value=0.0012  Score=42.84  Aligned_cols=24  Identities=17%  Similarity=0.268  Sum_probs=21.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .-.+++.|++|+|||+|++.+.+.
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345999999999999999999875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.79  E-value=0.00095  Score=43.05  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+++.|++|+|||++++.+.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998643

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.79  E-value=0.0011  Score=48.17  Aligned_cols=30  Identities=17%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |+.+..-+++.|+||+|||+++..+|....
T Consensus        42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a   71 (338)
T 4a1f_A           42 GFNKGSLVIIGARPSMGKTSLMMNMVLSAL   71 (338)
T ss_dssp             SBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            577777799999999999999999887754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.79  E-value=0.0011  Score=43.82  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ..+++.|++|+|||++++.+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3599999999999999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.78  E-value=0.00094  Score=43.35  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|++.|++|+|||+++..++..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5999999999999999999865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.78  E-value=0.00089  Score=42.82  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35999999999999999999875

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.76  E-value=0.001  Score=41.96  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3889999999999999999764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.76  E-value=0.00099  Score=43.37  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+++.|++|+|||++++.+.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            446999999999999999999764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.76  E-value=0.00091  Score=42.68  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999853

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.76  E-value=0.001  Score=43.40  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35999999999999999998874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.76  E-value=0.001  Score=42.76  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..|++.|++|+|||+|++.+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            35999999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.76  E-value=0.001  Score=42.42  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||++++.+.+..
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            469999999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.75  E-value=0.0008  Score=42.55  Aligned_cols=21  Identities=48%  Similarity=0.885  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|++|+|||++++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            489999999999999999864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.0012  Score=43.32  Aligned_cols=24  Identities=17%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+++.|++|+|||+|++.+...
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346999999999999999998864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.74  E-value=0.0003  Score=55.08  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=18.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIG   75 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la   75 (121)
                      ...+.|.||+||||||+++++.
T Consensus       348 Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          348 GTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TSEEEEECSTTSSHHHHHTTTH
T ss_pred             CCEEEEEeeCCCCHHHHHHHHH
Confidence            4458899999999999997653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.74  E-value=0.0011  Score=42.49  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35999999999999999998864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.72  E-value=0.00092  Score=45.48  Aligned_cols=24  Identities=29%  Similarity=0.337  Sum_probs=21.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..|+|+|++|+|||++++++.+..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCC
Confidence            459999999999999999998754

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.72  E-value=0.0012  Score=45.27  Aligned_cols=23  Identities=26%  Similarity=0.098  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -++++||+|+||||++..++..+
T Consensus        14 i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           14 IEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            46779999999999888777766

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.72  E-value=0.001  Score=42.57  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+.+.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            45999999999999999998753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.72  E-value=0.0011  Score=42.94  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||+|++.+.+..
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            359999999999999999888754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.71  E-value=0.001  Score=43.14  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999999874

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.71  E-value=0.0011  Score=42.61  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=20.5

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ....+++.|++|+|||++++.+..
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            345699999999999999988873

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.70  E-value=0.0013  Score=43.96  Aligned_cols=26  Identities=31%  Similarity=0.455  Sum_probs=22.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...++++|.+|+||||++..++....
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34688999999999999999998753

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.70  E-value=0.0011  Score=51.44  Aligned_cols=25  Identities=32%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +.+++.|+||||||+++..+...+.
T Consensus       165 ~~~vi~G~pGTGKTt~l~~ll~~l~  189 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKLLAALI  189 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4588999999999998887776653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.70  E-value=0.0013  Score=48.07  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .++++|+||+|||||++++++..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            38899999999999999998754

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.70  E-value=0.0013  Score=47.44  Aligned_cols=23  Identities=30%  Similarity=0.310  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -.+|+||+|+|||+++.||.-.+
T Consensus        25 ~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           25 INLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999986544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.69  E-value=0.0011  Score=42.79  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+.+.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45999999999999999998864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.69  E-value=0.0011  Score=43.48  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|++|+|||++++.+.+
T Consensus        25 ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            599999999999999999987

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.69  E-value=0.0031  Score=48.18  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=32.1

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+.|-+..++++ .+.+...           -...+-++++||+|.|||++|..++..
T Consensus       125 ~~vGR~~~l~~L-~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          125 VFVTRKKLVNAI-QQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             SCCCCHHHHHHH-HHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eecccHHHHHHH-HHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            477888888777 3333211           012345889999999999999998753

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.69  E-value=0.0012  Score=47.89  Aligned_cols=25  Identities=28%  Similarity=0.509  Sum_probs=22.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...++++|+||+||||++..++..+
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            3458899999999999999999876

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=96.69  E-value=0.0011  Score=51.55  Aligned_cols=23  Identities=48%  Similarity=0.660  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..++.||||||||+++..+...+
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999877666554

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.69  E-value=0.0012  Score=42.21  Aligned_cols=24  Identities=25%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||++++.+....
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            469999999999999999987643

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.68  E-value=0.0018  Score=44.05  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=18.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ...+++.||+|||||+++..+.-
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHHh
Confidence            45689999999999987665543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.67  E-value=0.0013  Score=42.81  Aligned_cols=24  Identities=25%  Similarity=0.234  Sum_probs=20.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||+|++.+.+..
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            359999999999999999998653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.67  E-value=0.00098  Score=54.28  Aligned_cols=23  Identities=30%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ..-++|+||+|+||||++|.++.
T Consensus       662 g~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999843

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.67  E-value=0.0013  Score=42.80  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||+|++.+.+..
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            459999999999999999998743

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.66  E-value=0.0013  Score=50.12  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +..|+++|++|+||||++..+|..+.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45688999999999999999997764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.66  E-value=0.0011  Score=47.67  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++|.|++|+|||+++..+...
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc
Confidence            567999999999999999998874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.66  E-value=0.0013  Score=42.34  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999998864

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.66  E-value=0.0013  Score=42.83  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||+|++.+...
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5999999999999999877664

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.66  E-value=0.0013  Score=42.22  Aligned_cols=22  Identities=18%  Similarity=0.173  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.65  E-value=0.00088  Score=43.32  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4899999999999999998864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.64  E-value=0.0015  Score=45.00  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+++.|++|+||||++-.+|..+...
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~~   33 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLRQ   33 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            58899999999999988888876443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.64  E-value=0.0015  Score=42.80  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.5

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ....+++.|++|+|||++++.+..
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            345699999999999999998864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.63  E-value=0.00084  Score=48.01  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -.+|+||+|+|||+++.++.-.+
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             cEEEECCCCCcHHHHHHHHHHHh
Confidence            57789999999999999999665

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.63  E-value=0.0019  Score=41.92  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+++.|++|+|||++++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            346999999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.63  E-value=0.00098  Score=43.19  Aligned_cols=24  Identities=13%  Similarity=0.180  Sum_probs=20.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||++++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            359999999999999999988753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.63  E-value=0.0014  Score=42.96  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..|++.|++|+|||+|+..+...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35999999999999999998864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.63  E-value=0.0014  Score=43.00  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..+++.|++|+|||+|++.+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            459999999999999999988753

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.62  E-value=0.0017  Score=48.30  Aligned_cols=26  Identities=31%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+..++++||+|+|||++++.+++..
T Consensus       173 rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          173 RGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCChhHHHHHHHHHH
Confidence            34559999999999999999999875

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.0013  Score=42.92  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -.|++.|++|+|||++++.+.+.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35999999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.61  E-value=0.0015  Score=41.88  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=20.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -.+++.|++|+|||++++.+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45999999999999999998753

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.60  E-value=0.0017  Score=48.69  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |+.++.-+++.|+||+|||+++-.+|....
T Consensus       193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a  222 (444)
T 3bgw_A          193 GYKRRNFVLIAARPSMGKTAFALKQAKNMS  222 (444)
T ss_dssp             SBCSSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence            577777799999999999999988887653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.60  E-value=0.0015  Score=42.40  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.60  E-value=0.0014  Score=42.79  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=20.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .|++.|++|+|||+|++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            59999999999999999998754

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.59  E-value=0.0015  Score=42.30  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999865

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.59  E-value=0.0011  Score=47.59  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ..|++|.|+||+|||++|..+..
T Consensus       147 g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999888765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.58  E-value=0.0016  Score=42.47  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|++.|++|+|||+|++.+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5999999999999999888764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.58  E-value=0.0016  Score=42.44  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4999999999999999998864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.57  E-value=0.0016  Score=42.37  Aligned_cols=23  Identities=26%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+.+.
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            35999999999999999999864

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.57  E-value=0.0015  Score=44.77  Aligned_cols=29  Identities=24%  Similarity=0.141  Sum_probs=23.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      .++++||+|+|||.++-+++...+...+.
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~li  138 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINELSTPTLI  138 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCEEE
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCEEE
Confidence            48999999999999998888877555433

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.57  E-value=0.0014  Score=43.03  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.56  E-value=0.0017  Score=42.42  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -.+++.|++|+|||++++.+.+..
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            359999999999999999998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.56  E-value=0.0015  Score=43.00  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=21.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...+++.|++|+|||+|++.+.+..
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3459999999999999999998743

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.56  E-value=0.0015  Score=41.93  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ..+++.|++|+|||+|++.+..
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3599999999999999999884

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.54  E-value=0.0048  Score=47.15  Aligned_cols=43  Identities=16%  Similarity=0.171  Sum_probs=31.0

Q ss_pred             CcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          23 GLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        23 Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      |-+..++++ .+.+..          -+-...+.+.++|+.|.|||++|+.+++
T Consensus       132 GR~~~~~~l-~~~L~~----------~~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          132 IREYHVDRV-IKKLDE----------MCDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCHHHHHHH-HHHHHH----------HTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CchHHHHHH-HHHHhc----------ccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            899888887 333311          1112245688999999999999999996

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.54  E-value=0.0016  Score=42.44  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+...
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            46999999999999999999873

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.53  E-value=0.0016  Score=42.93  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|+..+.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35999999999999999999864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.53  E-value=0.0018  Score=42.74  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...|+++|++|+|||+|+..+...
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            346999999999999999998854

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.52  E-value=0.0014  Score=46.52  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+.+.|+||+|||||++++.+.
T Consensus        10 ~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A           10 FIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5889999999999999999875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.51  E-value=0.0013  Score=42.20  Aligned_cols=23  Identities=13%  Similarity=0.150  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -.+++.|++|+|||++++.+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35999999999999999998874

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.51  E-value=0.0017  Score=43.27  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.6

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35999999999999999999875

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.51  E-value=0.0019  Score=47.76  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=21.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+.|.|+||+||||+.+++.+.
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            445899999999999999999983

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.50  E-value=0.0017  Score=43.12  Aligned_cols=23  Identities=39%  Similarity=0.527  Sum_probs=20.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||++++.+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35999999999999999998764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.47  E-value=0.0016  Score=42.14  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ....+++.|++|+|||++++.+.+.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3456999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.46  E-value=0.0016  Score=45.73  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .++|.|+||+|||||.+++.+.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4899999999999999999874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.45  E-value=0.0021  Score=42.60  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|+..+...
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35999999999999999999864

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.45  E-value=0.0022  Score=52.77  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +..++|+||+|+||||++|.+ +.
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl  811 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GL  811 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HH
Confidence            356889999999999999999 54

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.42  E-value=0.0017  Score=45.04  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|.||+||||+..++.+.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.41  E-value=0.0021  Score=42.52  Aligned_cols=23  Identities=22%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|+..+.+.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            36999999999999999999863

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=96.41  E-value=0.0021  Score=51.53  Aligned_cols=23  Identities=48%  Similarity=0.660  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..++.||||||||+++..++..+
T Consensus       373 ~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          373 LSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHH
Confidence            47899999999999877666654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.41  E-value=0.0028  Score=54.46  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=30.1

Q ss_pred             hHHHHHh---CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          43 PEVVEQL---GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        43 ~~~~~~~---~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +++.+-+   |+.++..++|+||||+|||+++..+|.....
T Consensus       718 ~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~  758 (1706)
T 3cmw_A          718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR  758 (1706)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence            3444444   4777888999999999999999999887654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.41  E-value=0.0018  Score=41.96  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ...+++.|++|+|||++++.+.+
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            44699999999999999999984

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.40  E-value=0.0018  Score=48.96  Aligned_cols=31  Identities=16%  Similarity=0.159  Sum_probs=25.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |+.+..-+++.|+||+|||+++..+|.....
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~  268 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGT  268 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence            5666667999999999999999998887654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.38  E-value=0.0025  Score=41.87  Aligned_cols=22  Identities=27%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|.+|+|||+|+..+.+.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999998853

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.38  E-value=0.00073  Score=50.35  Aligned_cols=24  Identities=21%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..-+.|+|+||+|||||++++++.
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            345899999999999999999886

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.38  E-value=0.0012  Score=42.53  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=9.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++.|++|+|||+|++.+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46999999999999999988753

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=96.37  E-value=0.0026  Score=44.04  Aligned_cols=25  Identities=32%  Similarity=0.268  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.|+|++||||||+++.++..++.+
T Consensus         4 i~ltG~~~sGK~tv~~~l~~~~g~~   28 (241)
T 1dek_A            4 IFLSGVKRSGKDTTADFIMSNYSAV   28 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCe
Confidence            7799999999999999999876543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.37  E-value=0.0023  Score=41.63  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||++++.+...
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5999999999999999999865

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.37  E-value=0.0021  Score=44.61  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|+||+|||++..++.+.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999873

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.36  E-value=0.0022  Score=41.73  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...|++.|++|+|||+|++.+.+.
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            335999999999999999988753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.36  E-value=0.0024  Score=42.34  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.2

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..|+++|++|+|||+|++.+...
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            35999999999999999998853

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.35  E-value=0.002  Score=42.16  Aligned_cols=24  Identities=21%  Similarity=0.135  Sum_probs=20.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+++.|++|+|||++++.+.+.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345999999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	2e-18
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	8e-18
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	2e-16
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	1e-15
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	2e-12
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	9e-10
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	2e-08
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	8e-08
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	4e-06
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	6e-06
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	4e-05
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	7e-05
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	9e-05
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	2e-04
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	6e-04
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.001
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	0.002
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	0.004

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 75.6 bits (186), Expect = 2e-18
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           + G D+    +        +  P   ++LG +  KG+L+ GPPGTGKTL+A+ I      
Sbjct: 14  VAGCDEAKEEV--AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 71

Query: 81  REPKI-VNGPQVLDKYVGESEANVRRLFADAEE 112
             P   ++G   ++ +VG   + VR +F  A++
Sbjct: 72  --PFFTISGSDFVEMFVGVGASRVRDMFEQAKK 102

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 73.7 bits (181), Expect = 8e-18
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 5/93 (5%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           + G ++    +  +     +  P    ++G +  KG+LL GPPG GKT +AR +      
Sbjct: 11  VAGAEEAKEEL--KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV 68

Query: 81  REPKI-VNGPQVLDKYVGESEANVRRLFADAEE 112
             P I  +G   ++ +VG   A VR LF  A+ 
Sbjct: 69  --PFITASGSDFVEMFVGVGAARVRDLFETAKR 99

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 70.8 bits (173), Expect = 2e-16
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 43  PEVVEQLGCQHVKGILL-YGPPGTGKTLMARQIGQMLNAREPKI-VNGPQVLDKYVGESE 100
           P V E  G ++  G+++  G   +GKT +   +G+ L  ++    V   + L  Y  +  
Sbjct: 111 PVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFN 170

Query: 101 ANVRRLFADAEE 112
             V  +     +
Sbjct: 171 VFVDDIARAMLQ 182

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.7 bits (167), Expect = 1e-15
 Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           IGGL+     + +      V  P+   + G    KG+L YGPPG GKTL+A+ I     A
Sbjct: 9   IGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 67

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVSH 119
               I  GP++L  + GESEANVR +F  A +    V  
Sbjct: 68  NFISI-KGPELLTMWFGESEANVREIFDKARQAAPCVLF 105

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 2e-12
 Identities = 35/97 (36%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 21  IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
           +GG  K+   I +      +  P + + +G +  +GILLYGPPGTGKTL+AR +      
Sbjct: 6   VGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG- 63

Query: 81  REPKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRV 117
               ++NGP+++ K  GESE+N+R+ F +AE+    +
Sbjct: 64  AFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAI 100

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 52.4 bits (125), Expect = 9e-10
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY-VGESEANVRRLFADAEEE 113
           +  L  GP  +GKT +A  + ++    +   VN P     + +G +      +F D +  
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCG-GKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGT 213

Query: 114 EKRVSHK 120
                  
Sbjct: 214 GGESRDL 220

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.4 bits (114), Expect = 2e-08
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 44  EVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANV 103
           +  +      +  +LL GPP +GKT +A +I +  N    KI   P  +  +   ++   
Sbjct: 30  QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI-CSPDKMIGFSETAKCQA 88

Query: 104 RR 105
            +
Sbjct: 89  MK 90

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 46.9 bits (110), Expect = 8e-08
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP---QVLDKYVGESEANVRRLFADAE 111
              LL G PG+GKT +   I +        +++     Q    +    +   + +     
Sbjct: 33  TAFLLGGQPGSGKTSLRSAIFEETQGN-VIVIDNDTFKQQHPNFDELVKLYEKDVVKHVT 91

Query: 112 EEEKRVSHKW 121
               R++   
Sbjct: 92  PYSNRMTEAI 101

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.1 bits (98), Expect = 4e-06
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 55 KGILLYGPPGTGKTLMARQIGQMLNA 80
          K IL+ GP G GKT +AR++ ++ NA
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANA 75

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 41.4 bits (96), Expect = 6e-06
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 55  KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRR 105
           K IL+ GP G GKT +AR++ ++ NA   K+         YVG+   ++ R
Sbjct: 50  KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIR 100

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 39.0 bits (89), Expect = 4e-05
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 52  QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK---IVNGPQVLDKYVGESEANVRRLFA 108
            H     L G PGTGKT+  R++ ++   +       +NG    +      E        
Sbjct: 41  HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIP 100

Query: 109 DAEEEEKRVSHKW 121
                  R     
Sbjct: 101 FPRRGLSRDEFLA 113

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 38.4 bits (88), Expect = 7e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 48 QLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA 80
          +   + ++ +LL+GPPG GKT +A  I   L  
Sbjct: 29 KARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 61

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 38.0 bits (87), Expect = 9e-05
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 56 GILLYGPPGTGKTLMARQIGQML 78
          G+L++G  GTGK+   R +  +L
Sbjct: 30 GVLVFGDRGTGKSTAVRALAALL 52

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 11/98 (11%), Positives = 23/98 (23%), Gaps = 5/98 (5%)

Query: 23  GLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNARE 82
               E  A+ R      +                    G  G GKT +A+   + ++   
Sbjct: 20  VRRGEAEALARIYLNRLLSGA-----GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA 74

Query: 83  PKIVNGPQVLDKYVGESEANVRRLFADAEEEEKRVSHK 120
            K     +        +      L     +    +  +
Sbjct: 75  AKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR 112

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.5 bits (80), Expect = 6e-04
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 55 KGILLYGPPGTGKTLMARQIGQMLN 79
          +  +LYGPPG GKT  A  + Q L 
Sbjct: 53 RAAMLYGPPGIGKTTAAHLVAQELG 77

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.001
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIV 86
          + + L GPPG GKT +  +  ++L +    + 
Sbjct: 2  RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 55 KGILLYGPPGTGKTLMARQIGQMLNA 80
            +LL GPPG GKT +A  I   L  
Sbjct: 36 DHVLLAGPPGLGKTTLAHIIASELQT 61

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 33.0 bits (74), Expect = 0.004
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 57  ILLYGPPGTGKTLMARQIGQMLNA-REPKIVNGPQVLDKYVGESEANVRRLFADAEEEEK 115
           ++  G  G+GKT +  + G+ L    +   VN    + +   E   +VR      E   +
Sbjct: 3   VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62

Query: 116 RV 117
             
Sbjct: 63  GY 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.89
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.88
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.88
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.84
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.56
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.54
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.52
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.31
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.27
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.26
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.21
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.12
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.94
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.78
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	98.78
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.77
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.73
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.7
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.7
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.7
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.69
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.68
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.68
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.65
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	98.64
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.61
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.59
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.59
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.56
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.54
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.54
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.52
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.51
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.51
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.5
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.49
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.48
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.47
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.47
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.46
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.46
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.46
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.44
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.39
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.39
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.37
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.37
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.36
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.36
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.36
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.33
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.33
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.32
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.32
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.32
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.32
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.31
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.31
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.3
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.28
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.27
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.27
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.27
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.26
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.25
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.23
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.23
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.22
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.22
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.21
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.21
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.21
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.2
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.19
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.17
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.16
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.15
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.14
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.13
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.12
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.09
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.07
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.04
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.01
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.98
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.89
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.86
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.86
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.84
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.81
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.77
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.75
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.67
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.64
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.57
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.57
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.51
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.51
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.51
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.48
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.48
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.46
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.46
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.42
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.41
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.41
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.37
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.36
d1okkd2	207	GTPase domain of the signal recognition particle r	97.36
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.35
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.34
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.31
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.29
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.29
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.28
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.27
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.25
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.24
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.23
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.23
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.21
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.21
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.21
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.21
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.2
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.19
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.19
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.13
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.13
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.11
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.09
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.09
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.06
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.04
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.02
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.02
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.01
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.01
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.01
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.01
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.0
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.0
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.99
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.96
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.96
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.95
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.94
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.92
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.92
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.91
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.9
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.88
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.88
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.88
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.84
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.84
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.81
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.81
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.79
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.79
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.78
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.76
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.75
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.75
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.73
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.71
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.7
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.7
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.69
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.69
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.67
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.65
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.64
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.63
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.62
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.61
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.6
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.6
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.58
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.57
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.57
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.55
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.52
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.49
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.48
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.48
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.46
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.44
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.42
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.42
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.41
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.41
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.41
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.4
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.39
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.39
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.38
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.37
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.32
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.26
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.26
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.25
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.24
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.24
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.22
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.0
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.99
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.95
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.85
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.81
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.79
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.76
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.76
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.68
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.58
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.47
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	95.47
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.43
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.36
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.29
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.27
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.14
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.11
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.08
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.03
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.97
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	94.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.74
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	94.53
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.48
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.45
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.34
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.23
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	94.2
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	94.02
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.84
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	93.75
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.71
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	93.52
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.5
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.42
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	93.4
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	93.32
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.2
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.13
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.02
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.98
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.93
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	92.86
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	92.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.36
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	92.23
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	92.16
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	92.11
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.09
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.01
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	91.95
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	91.75
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	91.16
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.04
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	91.0
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.76
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.66
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.64
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	90.63
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	90.57
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	90.31
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	90.26
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	89.99
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	89.99
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.56
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.36
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.28
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.16
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.07
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.04
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	88.94
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	88.4
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	88.15
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	86.98
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	85.52
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.66
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	84.36
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	82.1

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=3e-24  Score=148.99  Aligned_cols=101  Identities=27%  Similarity=0.499  Sum_probs=90.1

Q ss_pred             CCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          11 SPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        11 ~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|++.|+  ||+|++++++++ ++.+. ++.+++.|+++|...++++||+||||||||++|+++|++++.+++. ++.++
T Consensus         3 ~p~~~~~--di~G~~~~k~~l-~~~i~-~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~-i~~~~   77 (247)
T d1ixza_           3 APKVTFK--DVAGAEEAKEEL-KEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT-ASGSD   77 (247)
T ss_dssp             CCSCCGG--GCCSCHHHHHHH-HHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEHHH
T ss_pred             CCCCcHH--HHccHHHHHHHH-HHHHH-HHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEE-EEhHH
Confidence            5677777  699999999988 66554 5778899999999999999999999999999999999999998665 78889


Q ss_pred             cchhhhchhHHHHHHHHHHHHHHHHh
Q psy3632          91 VLDKYVGESEANVRRLFADAEEEEKR  116 (121)
Q Consensus        91 ~~~~~~~~~~~~i~~~f~~a~~~~~~  116 (121)
                      +.++|+|+++++++++|+.|+.++|.
T Consensus        78 l~~~~~g~~~~~l~~~f~~a~~~~p~  103 (247)
T d1ixza_          78 FVEMFVGVGAARVRDLFETAKRHAPC  103 (247)
T ss_dssp             HHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred             hhhccccHHHHHHHHHHHHHHHcCCE
Confidence            99999999999999999999887764

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=9.4e-24  Score=147.14  Aligned_cols=95  Identities=27%  Similarity=0.508  Sum_probs=81.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES   99 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~   99 (121)
                      ||+|++++++++ ++.+. ++.+++.|+++|.+.++++||+||||||||++|+++|++++.+++. ++.+++.+.|+|++
T Consensus        13 Di~Gl~~~k~~l-~e~v~-~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~-i~~~~l~~~~~g~~   89 (256)
T d1lv7a_          13 DVAGCDEAKEEV-AELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT-ISGSDFVEMFVGVG   89 (256)
T ss_dssp             GSCSCHHHHHHT-HHHHH-HHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE-ECSCSSTTSCCCCC
T ss_pred             HHhchHHHHHHH-HHHHH-HHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE-EEhHHhhhcchhHH
Confidence            799999999998 66665 4778899999999999999999999999999999999999998665 78999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy3632         100 EANVRRLFADAEEEEKRV  117 (121)
Q Consensus       100 ~~~i~~~f~~a~~~~~~~  117 (121)
                      +.+++++|+.|++++|.+
T Consensus        90 ~~~l~~~f~~A~~~~P~i  107 (256)
T d1lv7a_          90 ASRVRDMFEQAKKAAPCI  107 (256)
T ss_dssp             HHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHcCCEE
Confidence            999999999999887653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.2e-23  Score=146.62  Aligned_cols=96  Identities=38%  Similarity=0.691  Sum_probs=89.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES   99 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~   99 (121)
                      ||+|++++++++ ++.+..++.+++.|+++|+++++|+||+||||||||++++++|.+++.+++. ++.+++.+.|.|++
T Consensus         5 dv~G~~~~k~~l-~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~-i~~~~l~~~~~g~~   82 (258)
T d1e32a2           5 DVGGCRKQLAQI-KEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL-INGPEIMSKLAGES   82 (258)
T ss_dssp             GCCSCSHHHHHH-HHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEE-ECHHHHTTSCTTHH
T ss_pred             hhccHHHHHHHH-HHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEE-EEchhhcccccccH
Confidence            699999999998 8899999999999999999999999999999999999999999999998655 78889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q psy3632         100 EANVRRLFADAEEEEKRV  117 (121)
Q Consensus       100 ~~~i~~~f~~a~~~~~~~  117 (121)
                      +..++.+|+.|+.++|.+
T Consensus        83 ~~~l~~~f~~A~~~~p~i  100 (258)
T d1e32a2          83 ESNLRKAFEEAEKNAPAI  100 (258)
T ss_dssp             HHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHHHHhcCCeE
Confidence            999999999999887753

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.2e-22  Score=141.97  Aligned_cols=102  Identities=36%  Similarity=0.638  Sum_probs=92.3

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      |.+.|+  ||+|++++++++ .+.+.+++.+++.+.++|+++++|+||+||||||||++++++|++++.+++. ++.+++
T Consensus         2 p~~~f~--di~G~~~~k~~l-~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~-~~~~~l   77 (265)
T d1r7ra3           2 PQVTWE--DIGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPEL   77 (265)
T ss_dssp             CCCSCS--SCSSSSCCCCHH-HHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEE-ECHHHH
T ss_pred             CCCCHH--HhcCHHHHHHHH-HHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEE-EEHHHh
Confidence            455666  599999999988 8888899999999999999999999999999999999999999999999665 788889


Q ss_pred             chhhhchhHHHHHHHHHHHHHHHHhh
Q psy3632          92 LDKYVGESEANVRRLFADAEEEEKRV  117 (121)
Q Consensus        92 ~~~~~~~~~~~i~~~f~~a~~~~~~~  117 (121)
                      .+.+.++++..++.+|+.|+.++|.+
T Consensus        78 ~~~~~~~~~~~l~~~f~~A~~~~p~i  103 (265)
T d1r7ra3          78 LTMWFGESEANVREIFDKARQAAPCV  103 (265)
T ss_dssp             HTSCTTTHHHHHHHHHHHHHHTCSEE
T ss_pred             hhccccchHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999887653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.56  E-value=2.9e-15  Score=103.15  Aligned_cols=69  Identities=23%  Similarity=0.354  Sum_probs=55.2

Q ss_pred             HHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchh-HHHHHHHHHHHHHHHHh
Q psy3632          47 EQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGES-EANVRRLFADAEEEEKR  116 (121)
Q Consensus        47 ~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~f~~a~~~~~~  116 (121)
                      +.....+++++||+||||||||++|+++|++++.+++. ++.++...++.+.+ .+.++++|+.|++.+|.
T Consensus        33 ~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~-i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~  102 (246)
T d1d2na_          33 KNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK-ICSPDKMIGFSETAKCQAMKKIFDDAYKSQLS  102 (246)
T ss_dssp             HHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE-EECGGGCTTCCHHHHHHHHHHHHHHHHTSSEE
T ss_pred             hccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccc-cccccccccccccchhhhhhhhhhhhhhcccc
Confidence            34455677899999999999999999999999999776 55666666666655 46799999999987654

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.54  E-value=1.3e-15  Score=108.38  Aligned_cols=71  Identities=21%  Similarity=0.285  Sum_probs=61.3

Q ss_pred             CChHHHHHhCCCCCccEEE-EcCCCCcHHHHHHHHHHHhcC--CCCeeecCcccchhhhchhHHHHHHHHHHHHH
Q psy3632          41 FPPEVVEQLGCQHVKGILL-YGPPGTGKTLMARQIGQMLNA--REPKIVNGPQVLDKYVGESEANVRRLFADAEE  112 (121)
Q Consensus        41 ~~~~~~~~~~~~~~~~vll-~Gp~G~GKT~l~~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~  112 (121)
                      ..+.+++.++...++|++| +||||||||.+|+++|.+++.  +++. +++++++++|.|+.+++++.+|+.|++
T Consensus       109 ~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~-~~~~~~~~~~~G~~e~~~~~~f~~a~~  182 (321)
T d1w44a_         109 CSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYAT-VRFGEPLSGYNTDFNVFVDDIARAMLQ  182 (321)
T ss_dssp             BCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEE-EEBSCSSTTCBCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEE-EEhhHhhhcccchHHHHHHHHHHHHhh
Confidence            4567778888888888765 899999999999999999874  4443 889999999999999999999999985

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.52  E-value=1.9e-15  Score=107.12  Aligned_cols=92  Identities=28%  Similarity=0.289  Sum_probs=67.0

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHh-CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc--hhhh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQL-GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL--DKYV   96 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~-~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~--~~~~   96 (121)
                      .|.|++++++.+ ...+..++....+.... .-.+++++||+||||||||++|+++|+.++.++.. ++.+++.  +.+.
T Consensus        15 ~ViGQd~A~~~l-~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~-i~~s~~~~~~~~~   92 (309)
T d1ofha_          15 HIIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVG   92 (309)
T ss_dssp             TCCSCHHHHHHH-HHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE-EEGGGGSSCCSGG
T ss_pred             cccChHHHHHHH-HHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhc-ccccccccceeEe
Confidence            378999999887 55553221111111111 11256899999999999999999999999988655 6777776  4588


Q ss_pred             chhHHHHHHHHHHHHHH
Q psy3632          97 GESEANVRRLFADAEEE  113 (121)
Q Consensus        97 ~~~~~~i~~~f~~a~~~  113 (121)
                      ++.++.++.+|+.|+..
T Consensus        93 ~~~~~~~~~~f~~a~~~  109 (309)
T d1ofha_          93 KEVDSIIRDLTDSAGGA  109 (309)
T ss_dssp             GSTTHHHHHHHHTTTTC
T ss_pred             eeccccccccchhhhcc
Confidence            99999999999998653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=1.7e-12  Score=87.77  Aligned_cols=64  Identities=25%  Similarity=0.390  Sum_probs=46.9

Q ss_pred             cccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        15 ~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|+  ++.|+++.++++ +..+....        ..-....+++|+||||||||++|+++|++++.++.. .++..
T Consensus         7 ~~~--divGqe~~~~~l-~~~i~~~~--------~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~-~~~~~   70 (238)
T d1in4a2           7 SLD--EFIGQENVKKKL-SLALEAAK--------MRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV-TSGPV   70 (238)
T ss_dssp             SGG--GCCSCHHHHHHH-HHHHHHHH--------HHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE-EETTT
T ss_pred             cHH--HcCChHHHHHHH-HHHHHHHH--------hcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCccc-ccCcc
Confidence            455  699999999987 55553321        111345579999999999999999999999988654 44433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.27  E-value=3.3e-12  Score=87.19  Aligned_cols=65  Identities=14%  Similarity=0.177  Sum_probs=43.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh---hhchhHHHHHHHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK---YVGESEANVRRLFADAEEEEK  115 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~f~~a~~~~~  115 (121)
                      +...|.+++|+||||||||++|+++|++++.+++. ++.+++...   +.+.........++.++....
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~-i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV-IDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSN   95 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEE-ECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEE-EecHHHHHHhccCcccchhhhHHHHHHHHhhcc
Confidence            44568899999999999999999999999988655 666555432   222223333444555444443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.26  E-value=4.7e-12  Score=85.68  Aligned_cols=63  Identities=25%  Similarity=0.424  Sum_probs=46.5

Q ss_pred             cccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        15 ~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .|+  ++.|.++.++++ +..+....        .+-..+.+++|+||||+|||++|+++|++++.++.. .++.
T Consensus         7 ~~d--divGq~~~~~~L-~~~i~~~~--------~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~-~~~~   69 (239)
T d1ixsb2           7 TLD--EYIGQERLKQKL-RVYLEAAK--------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRV-TSGP   69 (239)
T ss_dssp             SGG--GSCSCHHHHHHH-HHHHHHHT--------TSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEE-EETT
T ss_pred             CHH--HhCCHHHHHHHH-HHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEe-ccCC
Confidence            455  699999999887 55553221        122346789999999999999999999999887544 4433

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=1e-11  Score=91.60  Aligned_cols=91  Identities=31%  Similarity=0.391  Sum_probs=60.0

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCC-CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhch
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGC-QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVGE   98 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~-~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~~   98 (121)
                      |.|.+..++.+ .-.+-+.++...+-..... -.+.|||+.||+|||||.+|+.||+.++.||+. +++..+.. .|+|+
T Consensus        16 VvGQ~~AKk~l-svav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~-~daT~fTeaGYvG~   93 (443)
T d1g41a_          16 IIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK-VEATKFTEVGYVGK   93 (443)
T ss_dssp             CCSCHHHHHHH-HHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEGGGGC----CCC
T ss_pred             ccCcHHHHHHH-HHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEE-eecceeeecceeec
Confidence            78999999877 4433222111111011110 126689999999999999999999999999766 66666664 47777


Q ss_pred             h-HHHHHHHHHHHHHH
Q psy3632          99 S-EANVRRLFADAEEE  113 (121)
Q Consensus        99 ~-~~~i~~~f~~a~~~  113 (121)
                      . +..++++.+.|...
T Consensus        94 DVesii~~L~~~a~~~  109 (443)
T d1g41a_          94 EVDSIIRDLTDSAMKL  109 (443)
T ss_dssp             CTHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhhh
Confidence            6 66677777766544

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.4e-11  Score=82.45  Aligned_cols=75  Identities=23%  Similarity=0.324  Sum_probs=49.3

Q ss_pred             cccccccCCcHHHHHHHHHHHhhccCCChH----HHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPE----VVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        15 ~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~----~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      .|+  ++.|.++.++++ .+.+........    .....+....++++|+||||||||++|+++|++++.+... ++.++
T Consensus        12 ~~~--dlig~~~~~~~L-~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~-~~~~~   87 (253)
T d1sxja2          12 NLQ--QVCGNKGSVMKL-KNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILE-QNASD   87 (253)
T ss_dssp             SGG--GCCSCHHHHHHH-HHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE-ECTTS
T ss_pred             CHH--HhcCCHHHHHHH-HHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhc-ccccc
Confidence            455  699999999887 555543211100    0011233345679999999999999999999999877544 55554


Q ss_pred             cch
Q psy3632          91 VLD   93 (121)
Q Consensus        91 ~~~   93 (121)
                      ..+
T Consensus        88 ~~~   90 (253)
T d1sxja2          88 VRS   90 (253)
T ss_dssp             CCC
T ss_pred             chh
Confidence            443

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.94  E-value=1.1e-09  Score=74.06  Aligned_cols=66  Identities=23%  Similarity=0.444  Sum_probs=46.5

Q ss_pred             CccccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632           6 RQSIISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus         6 ~~~~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ......|++..+.  +.|-+.+++++ ...+...+      .+.+ ..+.+++|+||||||||+++++++..+...
T Consensus         5 ~~~~l~~~y~p~~--l~~Re~ei~~l-~~~l~~~l------~~~~-~~~~~lll~GppGtGKT~l~~~l~~~l~~~   70 (276)
T d1fnna2           5 DDSVFSPSYVPKR--LPHREQQLQQL-DILLGNWL------RNPG-HHYPRATLLGRPGTGKTVTLRKLWELYKDK   70 (276)
T ss_dssp             CGGGGSTTCCCSC--CTTCHHHHHHH-HHHHHHHH------HSTT-SSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             CcccCCCCCCCCC--CCCHHHHHHHH-HHHHHHHH------hCCC-CCCCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence            3455566666553  88999998887 44443221      1112 346689999999999999999999998543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.78  E-value=5.8e-09  Score=69.71  Aligned_cols=50  Identities=24%  Similarity=0.420  Sum_probs=38.2

Q ss_pred             cccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        15 ~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .|+  |+.|.++.++++ +..+...             ...+++|+||||+|||++|+++|+++..
T Consensus        22 ~~~--diig~~~~~~~l-~~~i~~~-------------~~~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          22 RLD--DIVGQEHIVKRL-KHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             STT--TCCSCHHHHHHH-HHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CHH--HccCcHHHHHHH-HHHHHcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            444  699999988887 5544311             1236999999999999999999998753

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=98.78  E-value=4.5e-09  Score=75.44  Aligned_cols=56  Identities=36%  Similarity=0.580  Sum_probs=36.6

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch-hhhchh-HHHHHHHHH
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD-KYVGES-EANVRRLFA  108 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~f~  108 (121)
                      .++.++||.||+|||||.+||++|..++.++.. ++.+++.. .|+|.. ...++++..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir-~D~s~~~e~gyvg~dv~~~i~~l~~  123 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI-SDATSLTEAGYVGEDVENILTRLLQ  123 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE-EEGGGCC--------CTHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHhhcccceee-hhhhhcccchhhHhhhccchhhhhh
Confidence            356789999999999999999999999887655 55555543 355543 233555443

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=3.1e-09  Score=66.43  Aligned_cols=28  Identities=43%  Similarity=0.714  Sum_probs=25.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +.|+|+|||||||||+++.||..++.++
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~   30 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEF   30 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            4699999999999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1e-08  Score=68.27  Aligned_cols=47  Identities=19%  Similarity=0.320  Sum_probs=36.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |+.|.++.++++ +..+...             ...+++|+||||+|||++|+++|+++..
T Consensus        16 d~ig~~~~~~~L-~~~~~~~-------------~~~~~ll~Gp~G~GKTt~a~~la~~l~~   62 (224)
T d1sxjb2          16 DIVGNKETIDRL-QQIAKDG-------------NMPHMIISGMPGIGKTTSVHCLAHELLG   62 (224)
T ss_dssp             GCCSCTHHHHHH-HHHHHSC-------------CCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred             HhcCCHHHHHHH-HHHHHcC-------------CCCeEEEECCCCCCchhhHHHHHHHHhc
Confidence            689999888877 5444221             1235999999999999999999998764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.70  E-value=4e-09  Score=75.68  Aligned_cols=44  Identities=23%  Similarity=0.240  Sum_probs=35.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      +.+.+++++|+||||||||++|+++|+.++.+++. ++.++..+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~-in~s~~rs~  193 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN-VNLPLDRLN  193 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC-CSSCTTTHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEE-EECcchhhH
Confidence            55667799999999999999999999999988655 555555443

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.7e-08  Score=67.11  Aligned_cols=47  Identities=28%  Similarity=0.535  Sum_probs=36.4

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |+.|.++.++.+ +..+...             ...+++|+||||+|||++++++|+++..
T Consensus        15 divg~~~~~~~L-~~~i~~~-------------~~~~lLl~Gp~G~GKttl~~~la~~l~~   61 (227)
T d1sxjc2          15 EVYGQNEVITTV-RKFVDEG-------------KLPHLLFYGPPGTGKTSTIVALAREIYG   61 (227)
T ss_dssp             GCCSCHHHHHHH-HHHHHTT-------------CCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HccCcHHHHHHH-HHHHHcC-------------CCCeEEEECCCCCChhHHHHHHHHHhhc
Confidence            699999888877 5544221             1225999999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.70  E-value=2.8e-09  Score=67.96  Aligned_cols=30  Identities=17%  Similarity=0.473  Sum_probs=26.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .+.|+|+|||||||||+|++||..++.+++
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i   36 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSA   36 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            457999999999999999999999987643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=9.6e-09  Score=69.11  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.+++++.+ +..+...            ....+++|+||||+|||++++++|+.+
T Consensus        12 diig~~~~~~~L-~~~~~~~------------~~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          12 ALSHNEELTNFL-KSLSDQP------------RDLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             GCCSCHHHHHHH-HTTTTCT------------TCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             HccCcHHHHHHH-HHHHHcC------------CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            599998877766 3322111            123369999999999999999999986

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.68  E-value=6.6e-09  Score=66.30  Aligned_cols=28  Identities=29%  Similarity=0.531  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .++|+|+|||||||+++.+|..++.+++
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~fi   30 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVGLL   30 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            3788899999999999999999998854

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.68  E-value=8e-09  Score=66.18  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=25.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      +.|+|+|+|||||||+++.+|..++.+++
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~i   31 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFV   31 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            35889999999999999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.65  E-value=7.1e-09  Score=66.10  Aligned_cols=28  Identities=29%  Similarity=0.409  Sum_probs=25.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      +|+|+|+||+||||+++++|..++.+++
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~   29 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFL   29 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            5899999999999999999999988754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.64  E-value=1.3e-08  Score=71.60  Aligned_cols=51  Identities=31%  Similarity=0.591  Sum_probs=37.6

Q ss_pred             CCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          12 PSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        12 ~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |.++|.  +|.|.+..+..+..-.+ .             ....++||.||||||||++||+++..+
T Consensus         2 ~~~~f~--~I~Gq~~~kral~laa~-~-------------~~~h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_           2 PVFPFS--AIVGQEDMKLALLLTAV-D-------------PGIGGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCCCGG--GSCSCHHHHHHHHHHHH-C-------------GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CCCChh--hccCcHHHHHHHHHHHh-c-------------cCCCeEEEECCCCccHHHHHHHHHHhC
Confidence            455666  69999988877622211 0             112369999999999999999999876

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=2.4e-08  Score=66.54  Aligned_cols=45  Identities=31%  Similarity=0.595  Sum_probs=34.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|.++.++.+ +..+..             ....+++|+||||+|||++++++|+++
T Consensus        13 diig~~~~~~~l-~~~i~~-------------~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          13 EVTAQDHAVTVL-KKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             TCCSCCTTHHHH-HHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HccCcHHHHHHH-HHHHHc-------------CCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            588998877776 433321             112359999999999999999999986

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.59  E-value=9.6e-09  Score=65.00  Aligned_cols=28  Identities=32%  Similarity=0.557  Sum_probs=25.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .|+|+|||||||||+|+.||..++.+++
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i   33 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYI   33 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence            5899999999999999999999987643

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=4.7e-08  Score=65.85  Aligned_cols=52  Identities=27%  Similarity=0.420  Sum_probs=39.5

Q ss_pred             cccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        15 ~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+  |+.|.++.++.+ ...+...            ..+..++|+||||+|||++|+++++.+...
T Consensus        10 ~~~--dlig~~~~~~~L-~~~i~~~------------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_          10 TFA--DVVGQEHVLTAL-ANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             SGG--GSCSCHHHHHHH-HHHHHTT------------CCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             CHH--HccChHHHHHHH-HHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            445  699999988877 4443221            235569999999999999999999988654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=1.2e-07  Score=62.50  Aligned_cols=80  Identities=25%  Similarity=0.386  Sum_probs=56.5

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcC---------CCCeeecCccc
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNA---------REPKIVNGPQV   91 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~---------~~~~~~~~~~~   91 (121)
                      +.|-++.++++ .+.             +......+++|+||||+|||+++..+|...-.         ..+..++.+.+
T Consensus        24 ~igRd~Ei~~l-~~i-------------L~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~L   89 (195)
T d1jbka_          24 VIGRDEEIRRT-IQV-------------LQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL   89 (195)
T ss_dssp             CCSCHHHHHHH-HHH-------------HTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred             CcCcHHHHHHH-HHH-------------HhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHH
Confidence            56778877776 222             23334568999999999999999999986521         11223566676


Q ss_pred             ch--hhhchhHHHHHHHHHHHHHHH
Q psy3632          92 LD--KYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        92 ~~--~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      ++  +|.|+-+.+++.+++++.+..
T Consensus        90 iAg~~~rG~~E~rl~~il~e~~~~~  114 (195)
T d1jbka_          90 VAGAKYRGEFEERLKGVLNDLAKQE  114 (195)
T ss_dssp             HTTTCSHHHHHHHHHHHHHHHHHST
T ss_pred             hccCCccHHHHHHHHHHHHHHhcCC
Confidence            64  466788999999999876543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.54  E-value=1.9e-08  Score=64.23  Aligned_cols=26  Identities=38%  Similarity=0.698  Sum_probs=23.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .++++||||||||||++++++.+..+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            38999999999999999999998765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.54  E-value=2.6e-08  Score=67.33  Aligned_cols=63  Identities=17%  Similarity=0.153  Sum_probs=37.7

Q ss_pred             ccCCCCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC-CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632           9 IISPSFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ-HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus         9 ~~~~~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~-~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ..+++...+  .+.|-+.+++++ ...+...+     ....+.. ....++|+||||||||++++++++.+.
T Consensus         8 ~l~~~~~P~--~~~~Re~e~~~l-~~~l~~~~-----~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2           8 VFDENYIPP--ELRVRRGEAEAL-ARIYLNRL-----LSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             GGSTTCCCS--SCSSSCHHHHHH-HHHHHHHH-----HTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             hcCCccCCC--CCCCHHHHHHHH-HHHHHHHH-----HcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHH
Confidence            334444434  478888888887 33322111     0001111 112356789999999999999999874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.54  E-value=2.2e-08  Score=64.97  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=29.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      |..|+|.|||||||||+|+.||..++...   ++.++++.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~---is~~~~~~   39 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQLAH---ISAGDLLR   39 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEE---CCHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCCcE---EehhHHHH
Confidence            44599999999999999999999998664   33444443

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.52  E-value=2.1e-08  Score=67.72  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=35.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      .+..+..+.|.||+||||||+++++++...++.+.+...+..+..
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~   71 (230)
T d1l2ta_          27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND   71 (230)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred             EEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCc
Confidence            344455689999999999999999999998888887555554443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.2e-08  Score=62.79  Aligned_cols=27  Identities=33%  Similarity=0.748  Sum_probs=24.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ++|+|+|||||||||+++.++..+...
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~   28 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSS   28 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            579999999999999999999998544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.51  E-value=3.4e-08  Score=62.59  Aligned_cols=27  Identities=48%  Similarity=0.650  Sum_probs=24.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +..|+|+|||||||||+++.||..++.
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            446999999999999999999998864

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=8.4e-08  Score=67.36  Aligned_cols=56  Identities=29%  Similarity=0.393  Sum_probs=39.9

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCC----CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGC----QHVKGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~----~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      .|.|.+.+++.+ .+.+...        ..++    .+...++|+||+|+|||.+|+++|..++.+++.
T Consensus        23 ~viGQ~~a~~~v-~~~v~~~--------~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~   82 (315)
T d1r6bx3          23 LVFGQDKAIEAL-TEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR   82 (315)
T ss_dssp             TSCSCHHHHHHH-HHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             eecChHHHHHHH-HHHHHHH--------HccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeE
Confidence            478999998888 3333211        1121    223358899999999999999999999877544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=2.6e-08  Score=67.67  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=35.4

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhh
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKY   95 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~   95 (121)
                      +..+.-+.|.||+||||||+++++++...++.+.+...+..+..+
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~   72 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTL   72 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeC
Confidence            344455889999999999999999999998888875555554433

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=2.6e-08  Score=63.18  Aligned_cols=30  Identities=27%  Similarity=0.507  Sum_probs=25.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCe
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPK   84 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~   84 (121)
                      +-|+|.|||||||||+++++++.++.+++.
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~   34 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGVPKVH   34 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSSCEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            347899999999999999999999877544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.47  E-value=4.4e-08  Score=61.91  Aligned_cols=28  Identities=25%  Similarity=0.338  Sum_probs=24.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +-|+|+||||+||||+|++|+..++...
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~~   31 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEPW   31 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence            4588999999999999999999998654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.47  E-value=4.2e-08  Score=61.75  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=23.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -++|+|||||||||+|+.|+..++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~~~   29 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLDNS   29 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            48899999999999999999998654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.46  E-value=4.9e-08  Score=61.78  Aligned_cols=28  Identities=32%  Similarity=0.390  Sum_probs=24.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      ..|+|+|+|||||||++++||..++..+
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~L~~~~   34 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVTLNQQG   34 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence            3477999999999999999999986543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=3.5e-08  Score=62.41  Aligned_cols=29  Identities=28%  Similarity=0.401  Sum_probs=24.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      +.-++|+|||||||||+++.|++.++...
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~   34 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQLHAAF   34 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            34477899999999999999999997653

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=4.1e-07  Score=62.54  Aligned_cols=79  Identities=24%  Similarity=0.322  Sum_probs=54.9

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC---------CCeeecCccc
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR---------EPKIVNGPQV   91 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~---------~~~~~~~~~~   91 (121)
                      +.|-++.++++ .+.             +......+++|+||||+|||++++.+|......         .+..++.+.+
T Consensus        20 ~igRd~Ei~~l-~~i-------------L~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~l   85 (268)
T d1r6bx2          20 LIGREKELERA-IQV-------------LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL   85 (268)
T ss_dssp             CCSCHHHHHHH-HHH-------------HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--
T ss_pred             ccChHHHHHHH-HHH-------------HhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechH
Confidence            66888887777 222             233345689999999999999999999864221         1223566677


Q ss_pred             ch--hhhchhHHHHHHHHHHHHHH
Q psy3632          92 LD--KYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        92 ~~--~~~~~~~~~i~~~f~~a~~~  113 (121)
                      ++  +|.|+-+..++.+++.+++.
T Consensus        86 iag~~~~g~~e~r~~~i~~~~~~~  109 (268)
T d1r6bx2          86 LAGTKYRGDFEKRFKALLKQLEQD  109 (268)
T ss_dssp             -CCCCCSSCHHHHHHHHHHHHSSS
T ss_pred             hccCccchhHHHHHHHHHHHhhcc
Confidence            75  57888899999999987643

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.44  E-value=3.6e-09  Score=71.53  Aligned_cols=43  Identities=21%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      +....-+.|.||+||||||+++++++...++.+.+...+..+.
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~   65 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT   65 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEecc
Confidence            3444458999999999999999999999888888755544443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.39  E-value=8e-08  Score=61.50  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=27.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      .|+|.|||||||||+|+.||..++...   ++.++++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~---i~~~~ll~   36 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPH---ISTGDMFR   36 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCE---EEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCce---echhHHHH
Confidence            388999999999999999999997653   44444443

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.39  E-value=5.7e-08  Score=64.22  Aligned_cols=43  Identities=26%  Similarity=0.433  Sum_probs=33.1

Q ss_pred             HHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeec
Q psy3632          45 VVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVN   87 (121)
Q Consensus        45 ~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~   87 (121)
                      +++++.+  +.+.-+.|.||+||||||+++++++.+.+..+.+..
T Consensus        16 vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~   60 (200)
T d1sgwa_          16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY   60 (200)
T ss_dssp             EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred             EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEE
Confidence            3444443  444558899999999999999999999887777643

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=6.5e-08  Score=65.35  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      +.....+.|.||+||||||+++++++...++.+.+...+.
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~   62 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK   62 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCE
Confidence            3445558899999999999999999999888777644443

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.37  E-value=9.9e-08  Score=61.78  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=27.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .++|.|||||||||+|+.||..++...   ++.++++
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g~~~---i~~gdll   38 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFCVCH---LATGDML   38 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE---EEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeE---EeHHHHH
Confidence            478899999999999999999997553   4444444

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.1e-08  Score=62.83  Aligned_cols=28  Identities=25%  Similarity=0.360  Sum_probs=23.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      .|+|+|+|||||||+|++||..++....
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l~~~~~   48 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYLVCHGI   48 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            3668999999999999999999876543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.36  E-value=7.7e-08  Score=65.24  Aligned_cols=59  Identities=24%  Similarity=0.344  Sum_probs=39.9

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHH
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADA  110 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a  110 (121)
                      +.....+.|.||+||||||+++++++.+.++.+.+...+..+.... ...+.+..+||..
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~-~~~r~ig~v~Q~~   87 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRNISMVFQSY   87 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGTEEEEEC--
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC-cccceEEEEeech
Confidence            3444558899999999999999999999988888755554444322 2223444555543

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.36  E-value=1.3e-07  Score=61.25  Aligned_cols=29  Identities=21%  Similarity=0.311  Sum_probs=25.2

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|.-|++.|||||||||+|+.||..++..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~   33 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV   33 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            35568899999999999999999999754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.33  E-value=9.3e-08  Score=62.21  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=29.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDK   94 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~   94 (121)
                      +.-|+|.|||||||||+|+.||..++...   ++.++++..
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~---is~g~llr~   45 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTH---LSTGDLLRA   45 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTCCEE---EEHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCee---EeccHHHHH
Confidence            34588999999999999999999987542   445555543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=1.5e-07  Score=60.48  Aligned_cols=26  Identities=38%  Similarity=0.689  Sum_probs=23.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+|.|||||||||+|+.||..++..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~   27 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIP   27 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            48899999999999999999999765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.32  E-value=1.5e-07  Score=60.53  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=23.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      |+|.|||||||||+|+.||..++...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~   28 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPH   28 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCce
Confidence            78999999999999999999997653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.3e-07  Score=60.83  Aligned_cols=26  Identities=35%  Similarity=0.654  Sum_probs=23.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|+|.|||||||||+++.||..++..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~   29 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAA   29 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            37889999999999999999999765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-07  Score=64.82  Aligned_cols=43  Identities=19%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .+.+...+.++||+||||||+++++++.+.+..+.+...+..+
T Consensus        36 ~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i   78 (251)
T d1jj7a_          36 TLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL   78 (251)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEec
Confidence            3445556999999999999999999999988877764444433

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.32  E-value=1.1e-07  Score=64.94  Aligned_cols=45  Identities=22%  Similarity=0.348  Sum_probs=34.2

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      +++++.  +.+...+.++||+||||||+++++++.+.+..+.+...+
T Consensus        30 ~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g   76 (253)
T d3b60a1          30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG   76 (253)
T ss_dssp             SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred             eeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECC
Confidence            344444  444556999999999999999999999988777764333

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.31  E-value=1.1e-07  Score=64.50  Aligned_cols=41  Identities=20%  Similarity=0.371  Sum_probs=32.2

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.  +.+...+.++||+||||||+++++++.+.+..+.+
T Consensus        17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I   59 (242)
T d1mv5a_          17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI   59 (242)
T ss_dssp             SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred             eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEE
Confidence            344444  44455699999999999999999999998776665

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.31  E-value=8.8e-08  Score=64.99  Aligned_cols=38  Identities=29%  Similarity=0.431  Sum_probs=30.7

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecC
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNG   88 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~   88 (121)
                      +....-+.|.||+||||||+++++++...++.+.+...
T Consensus        26 i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~   63 (240)
T d1g2912          26 VKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG   63 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEEC
Confidence            34445588999999999999999999998877776433

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1e-07  Score=64.66  Aligned_cols=48  Identities=15%  Similarity=0.317  Sum_probs=35.7

Q ss_pred             HHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          45 VVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        45 ~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      +++++.  +.+...+.++||+|+||||+++++++.+.+..+.+...+..+
T Consensus        18 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i   67 (241)
T d2pmka1          18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL   67 (241)
T ss_dssp             EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred             eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEe
Confidence            344444  444556999999999999999999999988777764444333

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=1.5e-07  Score=61.18  Aligned_cols=26  Identities=23%  Similarity=0.356  Sum_probs=23.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|+|.|||||||||+|+.||..++..
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~g~~   35 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDYSFV   35 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            48889999999999999999999754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.9e-07  Score=59.58  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .-|+|.|||||||||.|+.||..++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g~~   28 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYGYT   28 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            348899999999999999999999754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.27  E-value=1.3e-06  Score=58.37  Aligned_cols=46  Identities=20%  Similarity=0.105  Sum_probs=36.2

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      ++.|=++.++++ .+                 ...+.++++||+|+|||++++.++...+....
T Consensus        13 ~f~GR~~el~~l-~~-----------------~~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~   58 (283)
T d2fnaa2          13 DFFDREKEIEKL-KG-----------------LRAPITLVLGLRRTGKSSIIKIGINELNLPYI   58 (283)
T ss_dssp             GSCCCHHHHHHH-HH-----------------TCSSEEEEEESTTSSHHHHHHHHHHHHTCCEE
T ss_pred             hCCChHHHHHHH-Hh-----------------ccCCEEEEEcCCCCcHHHHHHHHHHHCCCCeE
Confidence            688888888776 21                 12356899999999999999999998876643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2.1e-07  Score=59.58  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=24.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .|+|.|||||||||.++.||..++...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~   28 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQ   28 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            378999999999999999999997653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.26  E-value=2.8e-07  Score=57.16  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -|+++||||+||||+|+.++...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            37889999999999999887654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.25  E-value=2e-07  Score=60.75  Aligned_cols=34  Identities=21%  Similarity=0.488  Sum_probs=27.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .++|.|||||||||+++.||..++..+   ++.++++
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g~~~---is~gdll   41 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFELKH---LSSGDLL   41 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBCCEE---EEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHCCeE---EcHHHHH
Confidence            488999999999999999999987553   4444444

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.23  E-value=8.6e-08  Score=65.10  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQ   90 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~   90 (121)
                      +.....+.|.||+||||||+++++++...+..+.+...+.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~   67 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDR   67 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCE
Confidence            3445568999999999999999999999888777644443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.23  E-value=2.4e-07  Score=60.98  Aligned_cols=26  Identities=27%  Similarity=0.439  Sum_probs=23.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      |.+.|||||||||+|+.||..++.++
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~~~   31 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGFTY   31 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            56779999999999999999998763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=2.7e-07  Score=60.48  Aligned_cols=34  Identities=21%  Similarity=0.423  Sum_probs=27.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      -|++.|||||||+|+|+.||..++.++   ++.+++.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~---iStGdLl   38 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHL---LDSGAIY   38 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE---EEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE---ECHHHHH
Confidence            477889999999999999999998664   4444443

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.22  E-value=3e-07  Score=62.32  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=28.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      -+.|.||+||||||+++++++.+.+..+.+...+
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G   59 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG   59 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCCCceEEEECC
Confidence            3668999999999999999999988777764343

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.21  E-value=2.1e-07  Score=63.03  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      ....-+.|.||+|+||||+++++++.+.+..+.+...+..+
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i   70 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI   70 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc
Confidence            33445889999999999999999999988877774444333

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.21  E-value=4.7e-07  Score=57.39  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=23.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      -|++.|+|||||||+++.|+..++...
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~~~   29 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRKEG   29 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            478999999999999999999987653

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=4.2e-07  Score=57.04  Aligned_cols=26  Identities=31%  Similarity=0.328  Sum_probs=22.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -+.++|++|||||||++.+++.+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            37899999999999999999987554

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.20  E-value=3.1e-08  Score=67.21  Aligned_cols=43  Identities=23%  Similarity=0.385  Sum_probs=32.7

Q ss_pred             HHHHHhCC--CCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          44 EVVEQLGC--QHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        44 ~~~~~~~~--~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+++.+.+  .++.-+.|.||+|+||||+.+++++.+.+..+.+.
T Consensus        16 ~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~   60 (238)
T d1vpla_          16 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT   60 (238)
T ss_dssp             EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence            33444433  44455889999999999999999999988777763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.19  E-value=2.9e-07  Score=62.84  Aligned_cols=48  Identities=21%  Similarity=0.336  Sum_probs=35.8

Q ss_pred             HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .++++.++.  ..-+.|.||+|+||||+++++++.+.++.+.+...+..+
T Consensus        19 aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i   68 (254)
T d1g6ha_          19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI   68 (254)
T ss_dssp             EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred             EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence            334444444  444889999999999999999999998888875444443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.17  E-value=2.4e-07  Score=63.41  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCccc
Q psy3632          51 CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQV   91 (121)
Q Consensus        51 ~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~   91 (121)
                      +....-+.|.||+||||||+++++++.+.++.+.+...+..
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~   65 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN   65 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEE
Confidence            34445588999999999999999999998887777544433

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.16  E-value=2.1e-07  Score=63.63  Aligned_cols=46  Identities=13%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             HHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCc
Q psy3632          44 EVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGP   89 (121)
Q Consensus        44 ~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~   89 (121)
                      .+++++.  +.+...+.++||+||||||+++++++.+.+..+.+...+
T Consensus        32 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g   79 (255)
T d2hyda1          32 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG   79 (255)
T ss_dssp             CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred             cceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCC
Confidence            3455544  444556999999999999999999999988777764333

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=3.5e-07  Score=63.28  Aligned_cols=41  Identities=27%  Similarity=0.290  Sum_probs=32.0

Q ss_pred             HHHHhCCCC--CccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          45 VVEQLGCQH--VKGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        45 ~~~~~~~~~--~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +++++.+..  ...+.++||+||||||++++|++.+.+..+.+
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I   93 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII   93 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEE
Confidence            445544444  44588999999999999999999998876655

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=6.5e-07  Score=58.09  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=23.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      --|+++|.||+||||+|++||..++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~~   29 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNFI   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            347899999999999999999988654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.5e-07  Score=57.16  Aligned_cols=28  Identities=18%  Similarity=0.228  Sum_probs=23.4

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .|.-++++|+|||||||+|+.++...+.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~~~~   40 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVSAGY   40 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGGGTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            3556889999999999999999877653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=2.3e-06  Score=56.33  Aligned_cols=27  Identities=19%  Similarity=0.357  Sum_probs=23.9

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+.+++|+||+|+|||++|+++|+.+-
T Consensus        23 l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          23 GHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            455699999999999999999999873

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.09  E-value=1.9e-06  Score=60.36  Aligned_cols=52  Identities=27%  Similarity=0.448  Sum_probs=34.5

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhC--CCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLG--CQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~--~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .|.|.+++++.+ ...+....      ..+.  -.+...++|+||+|+|||.+|+.+|..+
T Consensus        24 ~v~GQ~~ai~~v-~~~i~~~~------~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          24 RVVGQDEAIRAV-ADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             HSCSCHHHHHHH-HHHHHHHG------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEeCHHHHHHHH-HHHHHHHh------cCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            367899888887 33322110      0011  1222357889999999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.09  E-value=6.1e-06  Score=54.58  Aligned_cols=26  Identities=38%  Similarity=0.654  Sum_probs=23.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .+.|+||+|||||.|+.+++.++...
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~   63 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKR   63 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccC
Confidence            48999999999999999999987543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.07  E-value=1.4e-06  Score=55.40  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=23.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      +++.|+||+||||+++.++..++....
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~~~~   30 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDNQGI   30 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence            678999999999999999999976643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.04  E-value=1.4e-06  Score=55.81  Aligned_cols=28  Identities=29%  Similarity=0.325  Sum_probs=23.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREP   83 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~   83 (121)
                      -|.+.||+||||||+|+.|+..++....
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~~~   51 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQGI   51 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccccc
Confidence            3669999999999999999998876543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.01  E-value=5.9e-06  Score=59.35  Aligned_cols=79  Identities=23%  Similarity=0.333  Sum_probs=49.6

Q ss_pred             cCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC---------CCeeecCccc
Q psy3632          21 IGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQMLNAR---------EPKIVNGPQV   91 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~---------~~~~~~~~~~   91 (121)
                      +.|-|..++++ .+.             +.-....+++|+|+||+|||+++..+|...-..         .+..++.+.+
T Consensus        24 ~~gr~~ei~~~-~~~-------------L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l   89 (387)
T d1qvra2          24 VIGRDEEIRRV-IQI-------------LLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL   89 (387)
T ss_dssp             CCSCHHHHHHH-HHH-------------HHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred             CcCcHHHHHHH-HHH-------------HhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhh
Confidence            66888887777 222             222345679999999999999999888754111         1223677777


Q ss_pred             ch--hhhchhHHHHHHHHHHHHHH
Q psy3632          92 LD--KYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        92 ~~--~~~~~~~~~i~~~f~~a~~~  113 (121)
                      ++  +|.|+-+..+..+.+++...
T Consensus        90 ~ag~~~~g~~e~r~~~i~~~~~~~  113 (387)
T d1qvra2          90 LAGAKYRGEFEERLKAVIQEVVQS  113 (387)
T ss_dssp             --------CHHHHHHHHHHHHHTT
T ss_pred             hcccCcchhHHHHHHHHHHHhccC
Confidence            75  46788899999998887654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2.1e-06  Score=57.66  Aligned_cols=42  Identities=24%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVL   92 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~   92 (121)
                      .+..+.-+.|.||+|+||||+.+++++... ..+.+...+..+
T Consensus        21 ~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~~G~I~~~g~~i   62 (231)
T d1l7vc_          21 EVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPL   62 (231)
T ss_dssp             EEETTCEEECBCCTTSSHHHHHHHHHTSCC-CSSEEEESSSBG
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CceEEEECCEEC
Confidence            344455688999999999999999999654 557664444433

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.89  E-value=2.3e-05  Score=51.48  Aligned_cols=25  Identities=28%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      +..|.|+|.||+||||+++.|+..+
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4458899999999999999999866

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=4.9e-06  Score=53.88  Aligned_cols=25  Identities=28%  Similarity=0.542  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |+|+||+|+||||+++.++...+..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~~   27 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSSI   27 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCc
Confidence            8899999999999999999987543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=4.6e-06  Score=54.54  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|.+.||+||||||+++.|+..++..
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchh
Confidence            37799999999999999999988654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=5.1e-06  Score=53.53  Aligned_cols=24  Identities=29%  Similarity=0.562  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |+|+||+|+||||+++.++.....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCc
Confidence            899999999999999999988654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.81  E-value=6e-06  Score=52.83  Aligned_cols=25  Identities=24%  Similarity=0.523  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +-++|+||||+||||+++.+.....
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3478999999999999999988764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.77  E-value=8.1e-06  Score=51.35  Aligned_cols=25  Identities=16%  Similarity=0.078  Sum_probs=22.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.++|++||||||++..++.++...
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~~   28 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVRE   28 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            5699999999999999999987654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=9.2e-06  Score=51.94  Aligned_cols=30  Identities=20%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |+++..-++++||||+|||+++-.+|....
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            577777899999999999999998887643

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=8.4e-06  Score=53.51  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      |++...-++|+||||||||+++-.++..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            5777888999999999999999887754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.1e-05  Score=51.85  Aligned_cols=29  Identities=21%  Similarity=0.240  Sum_probs=25.3

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++...-++++||||||||+++..++...
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            67777789999999999999999988643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.57  E-value=2.1e-05  Score=51.99  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=24.8

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++...-++++||||+|||+++-.++...
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            57777789999999999999998887654

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.57  E-value=2.3e-05  Score=51.77  Aligned_cols=30  Identities=33%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |++...-++++||||+|||+++..+|....
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            577777899999999999999998888763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=3.7e-05  Score=50.41  Aligned_cols=23  Identities=17%  Similarity=0.392  Sum_probs=20.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ++|+||+|+||||+.+.+.....
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCC
Confidence            77899999999999999988764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.7e-05  Score=49.90  Aligned_cols=25  Identities=20%  Similarity=0.359  Sum_probs=21.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +-++|+||+|+||+|+++.+.....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCC
Confidence            3488999999999999999987653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=8.5e-05  Score=46.89  Aligned_cols=30  Identities=27%  Similarity=0.364  Sum_probs=25.7

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .++.-++|.|+=|+||||++|.+++.++..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            444458899999999999999999999765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.48  E-value=2.6e-05  Score=54.58  Aligned_cols=30  Identities=23%  Similarity=0.411  Sum_probs=26.1

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ....+++++||+|+||||++++++...+..
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence            445679999999999999999999988654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.48  E-value=3.7e-05  Score=50.47  Aligned_cols=23  Identities=30%  Similarity=0.722  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +++.||+|+|||||++.+...+.
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Confidence            67899999999999999987664

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=4e-05  Score=49.03  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|.++|++||||||+|+.+. ..+.+
T Consensus         5 IIgitG~~gSGKstva~~l~-~~g~~   29 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR-SWGYP   29 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH-HTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCe
Confidence            46789999999999999985 45533

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.46  E-value=0.00016  Score=49.21  Aligned_cols=48  Identities=15%  Similarity=0.090  Sum_probs=32.6

Q ss_pred             ccCCcHHHHHHHHHHHhhccCCChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          20 GIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        20 ~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ++.|-+..++.+.....           +.+-.....+.++|..|.||||+|+.+.+..
T Consensus        21 ~~~gR~~~~~~i~~~L~-----------~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLD-----------EMCDLDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             CSCCCHHHHHHHHHHHH-----------HHTTSSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceeCcHHHHHHHHHHHH-----------hccCCCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            46688888887733221           1111223457899999999999999998763

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.42  E-value=4.4e-05  Score=50.12  Aligned_cols=32  Identities=19%  Similarity=0.435  Sum_probs=26.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +.+-..+++|+|||+||||+++.++++.++..
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            44445679999999999999999999998643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.41  E-value=0.00021  Score=47.94  Aligned_cols=26  Identities=31%  Similarity=0.535  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ..|++.|++||||+++|+++......
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~s~~   49 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKLSDR   49 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcCC
Confidence            34999999999999999999876533

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.41  E-value=5e-05  Score=46.55  Aligned_cols=22  Identities=27%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy3632          57 ILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++.|+||+|||+|++.+...-
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999987653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=6.9e-05  Score=49.50  Aligned_cols=26  Identities=31%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .|.-++|+||+|+||||.+-.+|..+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            35568899999999999876677665

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.36  E-value=7.8e-05  Score=49.05  Aligned_cols=27  Identities=26%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ++-++|+||+|+||||.+--+|..+..
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~~   32 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQN   32 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            345789999999999987777777643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.35  E-value=3.3e-05  Score=49.50  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |.-|.+.|+.|+||||+++.|++.++.
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            445889999999999999999998854

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.34  E-value=5.2e-05  Score=49.25  Aligned_cols=27  Identities=37%  Similarity=0.448  Sum_probs=22.7

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      |++++.-++|+|+||+|||+++..++.
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            577778899999999999999876553

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.31  E-value=6.6e-05  Score=48.98  Aligned_cols=29  Identities=28%  Similarity=0.228  Sum_probs=24.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |+++..-++|.|+||+|||+++-.+|...
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            36777779999999999999999998765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=9.7e-05  Score=48.73  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |.-++|+||+|+||||.+--+|..+.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45588999999999998777787664

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.29  E-value=8.4e-05  Score=49.02  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=17.1

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .|.-++|+||+|+||||.+--+|..+.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345588899999999998766676654

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.28  E-value=0.00012  Score=48.17  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +-++|+||+|+||||.+-.+|..+..
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~   36 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKG   36 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34678999999999987777776643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.0001  Score=51.29  Aligned_cols=26  Identities=27%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |--|.+.|++|+||||+|+.|+..+.
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            44578999999999999999999885

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.25  E-value=9.5e-05  Score=45.48  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .++++|.||+|||||++.+.+.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.24  E-value=0.0001  Score=47.85  Aligned_cols=24  Identities=33%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |.++|++||||||+++.+. .++.+
T Consensus         5 IgITG~igSGKStv~~~l~-~~G~~   28 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFT-DLGVP   28 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHH-TTTCC
T ss_pred             EEEECCCCCCHHHHHHHHH-HCCCe
Confidence            6689999999999999886 45543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.0001  Score=47.60  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +.|++.|++|+|||+|++.+.+.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999998763

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.23  E-value=0.00011  Score=47.14  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=20.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++|.|+||+|||+++-.+...
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            568999999999999998877754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.21  E-value=0.00012  Score=45.71  Aligned_cols=22  Identities=18%  Similarity=0.333  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .++|+|++|+|||||+..+.+.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4999999999999999988654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00011  Score=50.51  Aligned_cols=25  Identities=36%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |--|.+.|++||||||++..|...+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHH
Confidence            4457789999999999999887665

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00012  Score=47.04  Aligned_cols=25  Identities=24%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |.+.|+.||||||+++.|+..+...
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~   27 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAA   27 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            6788999999999999999987543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00011  Score=48.08  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=21.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |.|.|+.|+||||+++.|+..+...
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
Confidence            6677999999999999999988544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00013  Score=47.44  Aligned_cols=27  Identities=11%  Similarity=0.092  Sum_probs=23.9

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+..++|+||||+|||++|+.++....
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            355799999999999999999999774

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00012  Score=44.63  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -++|.|+|++|||+|+..+.+.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999998874

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.00013  Score=47.37  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|+|.|+.||||||+++.++..+...
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            47889999999999999999987543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00014  Score=47.90  Aligned_cols=28  Identities=11%  Similarity=0.207  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |+-|++-|+-||||||+++.|+..+...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            5668999999999999999999988643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.13  E-value=0.00011  Score=47.11  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ..+++|.|++|+|||+++-.+..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            56899999999999999877765

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.11  E-value=0.00034  Score=50.04  Aligned_cols=28  Identities=36%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..-++++||.|+||||.+.++...+..+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~  185 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNSS  185 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence            3457889999999999999999887544

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00017  Score=46.25  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|+|+|+|++|||||..++.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.00014  Score=45.54  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|++.|++|+|||||++++.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.06  E-value=0.00013  Score=45.34  Aligned_cols=22  Identities=23%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||+|++.+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            3899999999999999998764

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00019  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .|.++||||+|||||+..++..+.
T Consensus        56 ~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          56 RLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999987764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.02  E-value=0.0002  Score=45.56  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=20.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ..+++|.|++|+|||+++-.+...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            568999999999999998776654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.02  E-value=0.00017  Score=45.02  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|+++|.+|+|||+|+..+...
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4999999999999999988764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=8e-05  Score=48.86  Aligned_cols=24  Identities=21%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -|.+-|+-||||||+++.|+..+.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            488999999999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=4.9e-05  Score=47.94  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .+|+||+|+|||+++.||.-.+..
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC
Confidence            667899999999999999987754

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00021  Score=46.43  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |.++|++||||||+++.+. .++.
T Consensus         6 IgitG~igSGKStv~~~l~-~~G~   28 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFA-DLGI   28 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHH-HTTC
T ss_pred             EEEECCCcCCHHHHHHHHH-HCCC
Confidence            6689999999999999886 4443

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.01  E-value=0.00023  Score=46.88  Aligned_cols=24  Identities=33%  Similarity=0.307  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |.|+|+.||||||+|+.++..++.
T Consensus         4 IgiTG~igSGKsTva~~l~e~~g~   27 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNYSA   27 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSCE
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            779999999999999999887654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.00  E-value=8.7e-05  Score=51.15  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|.++|++||||||++++++..++..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            38899999999999999999987643

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.99  E-value=0.00015  Score=45.57  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|+|+|+|++|||||..++.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00026  Score=44.39  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ++++|++|+|||+|++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            889999999999999987753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.95  E-value=0.00019  Score=45.84  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .|+|+|+||+|||||++++.+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            499999999999999999975

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.94  E-value=0.00028  Score=43.76  Aligned_cols=22  Identities=27%  Similarity=0.273  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|++|+|||+|++.+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3889999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.0003  Score=43.91  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ++++|++|+|||+|++.+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999988753

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00028  Score=47.18  Aligned_cols=29  Identities=24%  Similarity=0.303  Sum_probs=22.5

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |+.+..-.+|+|+||+|||+++-.+|..+
T Consensus        25 G~~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          25 NMVAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33444457799999999999998887754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.91  E-value=0.00031  Score=48.98  Aligned_cols=23  Identities=30%  Similarity=0.611  Sum_probs=20.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -+.++||||+||||+...++..+
T Consensus        53 ~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          53 RVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEeeeCCCCCCHHHHHHHHHHHH
Confidence            38899999999999999999765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.91  E-value=0.0004  Score=47.17  Aligned_cols=27  Identities=37%  Similarity=0.545  Sum_probs=23.8

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      ...+.|+||+++|||+++.+++..++.
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            456889999999999999999998854

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00024  Score=43.67  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|++.|++++|||||++++.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999999754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00033  Score=49.49  Aligned_cols=20  Identities=35%  Similarity=0.584  Sum_probs=16.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQI   74 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~l   74 (121)
                      +-.+++||||||||+++..+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            34888999999999976543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.00034  Score=43.40  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|++|+|||+|+..+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999988775

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00035  Score=47.36  Aligned_cols=31  Identities=26%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |++...-+.|+||||+|||++|-.++.....
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~   80 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR   80 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence            4455555889999999999998877776543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.88  E-value=0.00038  Score=47.44  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=17.8

Q ss_pred             ccEEEEcCCCCcHHHH-HHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLM-ARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l-~~~la~~~   78 (121)
                      ..+++.|+||||||+. +..++..+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHH
Confidence            3488999999999975 44555544

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.84  E-value=0.00042  Score=46.46  Aligned_cols=28  Identities=25%  Similarity=0.344  Sum_probs=23.4

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      |+.+..-+++.|+||+|||+++..+|..
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            5666667899999999999998888754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0003  Score=44.50  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|++|+|||+|++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            88999999999999998875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00047  Score=45.03  Aligned_cols=26  Identities=31%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      -|.|.|+-||||||+++.++..+...
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            47889999999999999999998765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.00022  Score=48.40  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -+|+||+|||||+++.|++-.++
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            57899999999999999977553

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00037  Score=43.49  Aligned_cols=20  Identities=45%  Similarity=0.737  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|.+|+|||+|++.+..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999999886

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00045  Score=42.89  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ++++|.+|+|||+|++.+...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00043  Score=43.39  Aligned_cols=21  Identities=24%  Similarity=0.518  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|++|+|||+|++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00044  Score=42.93  Aligned_cols=21  Identities=24%  Similarity=0.464  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +++.|.+|+|||+|++.+...
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999988763

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.00045  Score=43.08  Aligned_cols=20  Identities=25%  Similarity=0.546  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|++|+|||+|++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            88999999999999998775

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.76  E-value=0.0004  Score=43.62  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|+|+|.+|+|||+|++++.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00044  Score=43.12  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      -+++.|.+|+|||+|++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            499999999999999998775

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.00034  Score=46.47  Aligned_cols=25  Identities=28%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+..+|.|+||+|||||+.++....
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchh
Confidence            4458899999999999999997653

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.73  E-value=0.00039  Score=43.36  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .++++|++|+|||+|++.+..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999998854

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00049  Score=42.72  Aligned_cols=21  Identities=29%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +++.|++|+|||+|+..+...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00051  Score=42.59  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +++.|.+|+|||+|++.+...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00058  Score=42.55  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +++.|++|+|||+|++.+...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            899999999999999988763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00059  Score=42.36  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|.+|+|||+|++.+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998775

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00051  Score=42.74  Aligned_cols=20  Identities=20%  Similarity=0.522  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|.+|+|||+|++.+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            88999999999999988775

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=0.00058  Score=43.05  Aligned_cols=20  Identities=30%  Similarity=0.561  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      ++++|.+|+|||+|+..+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998876

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.00062  Score=42.01  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      |++.|.+|+|||+|++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00062  Score=42.37  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -++++|.+|+|||+|+..+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999988853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.00039  Score=43.87  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .|.|+|+|++|||||++++.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999865

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00059  Score=42.31  Aligned_cols=21  Identities=24%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      -|++.|++|+|||+|++.+..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.63  E-value=0.00065  Score=45.73  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=16.2

Q ss_pred             cEEEEcCCCCcHHHH-HHHHHHH
Q psy3632          56 GILLYGPPGTGKTLM-ARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l-~~~la~~   77 (121)
                      .+++.|+||||||+. +..++..
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHH
Confidence            478899999999975 4444443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00057  Score=42.58  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|+|.|.|++|||||++++.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.0007  Score=42.46  Aligned_cols=21  Identities=29%  Similarity=0.525  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .++++|.+|+|||+|++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.00061  Score=42.83  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .|++.|.+|+|||||+.++.+.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.00066  Score=41.91  Aligned_cols=20  Identities=20%  Similarity=0.371  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      |++.|.+|+|||+|++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00078  Score=42.06  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .++++|++|+|||+++..+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00068  Score=42.21  Aligned_cols=21  Identities=48%  Similarity=0.928  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +++.|.+|+|||+|++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999988754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00078  Score=41.91  Aligned_cols=20  Identities=30%  Similarity=0.574  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|++|+|||++++.+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998766

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00069  Score=42.26  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      |++.|.+|+|||++++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00071  Score=42.31  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      -|++.|.+|+|||+|++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            499999999999999988775

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00071  Score=42.38  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -+++.|.+|+|||+|+..+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999888764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.55  E-value=0.00084  Score=41.62  Aligned_cols=20  Identities=25%  Similarity=0.476  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|.+|+|||+|++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999998875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.0012  Score=44.82  Aligned_cols=29  Identities=31%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |++..+-..|+||+|+|||++|-.++...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            45556668899999999999987666655

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.001  Score=44.20  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +.++++||+.+|||+++|.+|-.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHH
Confidence            45889999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.00021  Score=43.96  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy3632          57 ILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      |+|.|.|++|||||++++.+.-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00084  Score=42.79  Aligned_cols=20  Identities=30%  Similarity=0.597  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      +++.|++|+|||+|++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999999998775

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.46  E-value=0.001  Score=41.44  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      -+++.|.+|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0011  Score=41.15  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      |+++|.+|+|||+|++.+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.001  Score=41.83  Aligned_cols=22  Identities=18%  Similarity=0.173  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|.+|+|||+|++.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4999999999999999887763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.0011  Score=41.15  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -+++.|.+|+|||+|++.+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3889999999999999887653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00051  Score=42.94  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=8.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~   76 (121)
                      |++.|.+|+|||+|++.+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999987765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.41  E-value=0.00053  Score=43.13  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=19.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .-.+++.|++|+|||+|++.+..
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34599999999999999988753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0012  Score=41.18  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|.+|+|||++++.+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998876

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.41  E-value=0.00064  Score=42.67  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .|.|.|.|++|||||++++.+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999865

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.40  E-value=0.00054  Score=42.78  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .++++|++|+|||++++.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            499999999999999998864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0011  Score=41.37  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      +++.|.+|+|||+|++.+...
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999988753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.39  E-value=0.00097  Score=40.00  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      +..++.+|.|+|||+++-.+....+..
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~~~   35 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQGYK   35 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTTCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcCCc
Confidence            457899999999999886666555544

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.38  E-value=0.0011  Score=44.93  Aligned_cols=31  Identities=29%  Similarity=0.361  Sum_probs=23.9

Q ss_pred             CCCCCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          50 GCQHVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |++..+-..++||+|||||++|-.++.....
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk   83 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQK   83 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHh
Confidence            3444455779999999999999888877643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0012  Score=46.13  Aligned_cols=22  Identities=36%  Similarity=0.601  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy3632          57 ILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -+++||+|+|||+++.||+-.+
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999997554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00071  Score=42.08  Aligned_cols=23  Identities=13%  Similarity=0.185  Sum_probs=19.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ...|+|+|.|++|||||.+++.+
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34599999999999999998855

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0014  Score=41.41  Aligned_cols=21  Identities=19%  Similarity=0.264  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|.+|+|||+|++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            388999999999999988775

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.26  E-value=0.00027  Score=47.14  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=20.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+..+|.|+||+|||||+.++....
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             cceEEEECCCCccHHHHHHhhccHh
Confidence            3457899999999999999998764

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.25  E-value=0.0014  Score=42.27  Aligned_cols=38  Identities=21%  Similarity=0.155  Sum_probs=26.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccch
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLD   93 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~   93 (121)
                      ..++..|+|+|||.++-.++..++.+.+.++....+..
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p~~~L~~  124 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE  124 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcCceeEEEcccchHH
Confidence            35678899999999988888888776544443333333

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.24  E-value=0.001  Score=44.59  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=21.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .-.|+|+|.+|+||||++.+|.+.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            346999999999999999999875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0014  Score=41.23  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -+++.|.+|+|||+|++.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999877763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0006  Score=42.61  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=17.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      .+++.|++|+|||+|+..+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999887654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=41.36  Aligned_cols=21  Identities=19%  Similarity=0.199  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      |++.|.+|+|||+|++.+...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999998877653

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.00  E-value=0.0021  Score=42.35  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .++++||+.+|||+++|.++-.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHHH
Confidence            4789999999999999977754

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.002  Score=40.57  Aligned_cols=19  Identities=37%  Similarity=0.620  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIG   75 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la   75 (121)
                      +++.|.+|+|||++++.+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            8999999999999999883

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0023  Score=45.29  Aligned_cols=24  Identities=29%  Similarity=0.624  Sum_probs=19.6

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .++++++|++|+|||++++.+...
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            357999999999999988765544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.95  E-value=0.0032  Score=43.87  Aligned_cols=27  Identities=26%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNARE   82 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~   82 (121)
                      .|.|-|+-|+||||+++.+++.+....
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCC
Confidence            478899999999999999999987653

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.85  E-value=0.0019  Score=45.00  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |.|-|+-|+||||+++.++..+...
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~   32 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAIT   32 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhc
Confidence            7789999999999999999988765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0034  Score=39.39  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|.+|+|||+|+..+...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999987764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.79  E-value=0.0027  Score=39.88  Aligned_cols=21  Identities=19%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~   76 (121)
                      +|.+.|.|.+|||||.+++.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999999975

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.76  E-value=0.0029  Score=41.16  Aligned_cols=22  Identities=27%  Similarity=0.549  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -+++.|.+|+|||++++.+...
T Consensus         8 KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999987543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0023  Score=41.90  Aligned_cols=23  Identities=39%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -.+++|.-|+||||+++.+.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            47899999999999999888753

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.68  E-value=0.002  Score=38.04  Aligned_cols=18  Identities=33%  Similarity=0.209  Sum_probs=15.1

Q ss_pred             CccEEEEcCCCCcHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMA   71 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~   71 (121)
                      ...++|..|+|+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            456899999999999655

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.019  Score=37.90  Aligned_cols=31  Identities=26%  Similarity=0.279  Sum_probs=22.5

Q ss_pred             HHHHhCCCCCccEEEEcCCCCcHHHHHHHHH
Q psy3632          45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIG   75 (121)
Q Consensus        45 ~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la   75 (121)
                      +.+.+..+.+...+|+|..|||||.++-..+
T Consensus        67 i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          67 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             HHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             HHHHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence            3444555556679999999999999854444

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.47  E-value=0.0051  Score=41.50  Aligned_cols=26  Identities=27%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +++.+.|..|+|||||+.++....+.
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~   28 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGA   28 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCC
Confidence            57999999999999999999765543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.47  E-value=0.013  Score=38.03  Aligned_cols=24  Identities=21%  Similarity=0.338  Sum_probs=18.4

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ++.+++.+|+|+|||+.+-..+-.
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHH
Confidence            557999999999999865554443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.0048  Score=38.56  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      .+++.|..|+|||++++.+....
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999886653

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.36  E-value=0.0062  Score=41.31  Aligned_cols=28  Identities=18%  Similarity=0.148  Sum_probs=23.9

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .-+++.+.|..|+|||||+.++....+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            3468999999999999999999876654

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.29  E-value=0.0074  Score=38.02  Aligned_cols=22  Identities=41%  Similarity=0.582  Sum_probs=17.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      ++.++++|.|+|||.++-.++.
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHHH
Confidence            3588999999999986655554

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0053  Score=41.96  Aligned_cols=27  Identities=30%  Similarity=0.477  Sum_probs=22.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      +..+++.|++|+|||+++..+++....
T Consensus        43 GQr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          43 GQRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             TCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            344999999999999999999986543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.14  E-value=0.0046  Score=42.99  Aligned_cols=26  Identities=23%  Similarity=0.383  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|.|-|+-|+||||+++.++..+...
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~~   31 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSRD   31 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----C
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCCC
Confidence            37789999999999999999887654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0096  Score=39.58  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=23.4

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .++-+++.|--|+||||++-++|..+..
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~   34 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAE   34 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHH
Confidence            4667888999999999998888887733

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.0063  Score=43.20  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      +-.|+++|.||+||||++.++.+
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            45699999999999999999975

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.03  E-value=0.0086  Score=38.53  Aligned_cols=27  Identities=15%  Similarity=0.119  Sum_probs=22.2

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |+-+|.+.|.+++|||||+.+|....+
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g   28 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAA   28 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhh
Confidence            345799999999999999999965543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.97  E-value=0.0077  Score=37.39  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+++.|..|+|||++++.+...
T Consensus         4 KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            3899999999999999887654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.0055  Score=39.01  Aligned_cols=18  Identities=50%  Similarity=0.661  Sum_probs=15.7

Q ss_pred             CccEEEEcCCCCcHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMA   71 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~   71 (121)
                      .+.+++..|+|+|||+.+
T Consensus        40 ~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CSCEEEECSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHH
Confidence            557999999999999875

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.74  E-value=0.012  Score=38.23  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          57 ILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      |.+.|.+.+|||||+.+|.+...
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhhcc
Confidence            88999999999999999987643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.015  Score=34.65  Aligned_cols=24  Identities=8%  Similarity=0.048  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .++|.|-+|+||+++|+++...+.
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            488899999999999999977763

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.45  E-value=0.047  Score=36.85  Aligned_cols=52  Identities=27%  Similarity=0.335  Sum_probs=32.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhc-CCCCeeecCcccchhhhchhHHHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLN-AREPKIVNGPQVLDKYVGESEANVRRLFADAEE  112 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~  112 (121)
                      ..+++.|++|+|||+++..++.... .+....+     + -..|+..+.+.+++++..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V-----~-~~iGer~~ev~~~~~~~~~  121 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSV-----F-AGVGERTREGNDLYHEMIE  121 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEE-----E-EEESCCHHHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEE-----E-EEeccChHHHHHHHHHHHh
Confidence            3499999999999999888887642 2211111     1 1345555556665555443

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.34  E-value=0.0078  Score=41.61  Aligned_cols=16  Identities=38%  Similarity=0.698  Sum_probs=14.0

Q ss_pred             cEEEEcCCCCcHHHHH
Q psy3632          56 GILLYGPPGTGKTLMA   71 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~   71 (121)
                      ..+|.|.+|||||||.
T Consensus        16 valffGLSGTGKTTLs   31 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEEECTTSCHHHHT
T ss_pred             EEEEEccCCCCccccc
Confidence            3789999999999974

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.0099  Score=40.97  Aligned_cols=16  Identities=38%  Similarity=0.698  Sum_probs=14.0

Q ss_pred             cEEEEcCCCCcHHHHH
Q psy3632          56 GILLYGPPGTGKTLMA   71 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~   71 (121)
                      -.+|.|.+|||||||.
T Consensus        16 ~alfFGLSGTGKTTLs   31 (313)
T d2olra1          16 VAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEEECSTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3689999999999975

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.022  Score=36.09  Aligned_cols=53  Identities=19%  Similarity=0.361  Sum_probs=32.9

Q ss_pred             cCCcHHHHHHHHHHHhhccCC---ChHHHHHhCCCCCccEEEEcCCCCcHHHHHHHHH
Q psy3632          21 IGGLDKEFTAIFRRAFASRVF---PPEVVEQLGCQHVKGILLYGPPGTGKTLMARQIG   75 (121)
Q Consensus        21 i~Gl~~~~~~i~~~~i~~~~~---~~~~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la   75 (121)
                      +-+|+...++++++.+-+.-.   +.+....+  -..+.+++.-|+|+|||.++....
T Consensus         6 ~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~--l~g~~vlv~apTGsGKT~~~~~~~   61 (206)
T d1oywa2           6 VLNLESGAKQVLQETFGYQQFRPGQEEIIDTV--LSGRDCLVVMPTGGGKSLCYQIPA   61 (206)
T ss_dssp             CSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCCCCcchhhhhh
Confidence            556888888887765532211   12333322  224679999999999998764433

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=94.02  E-value=0.019  Score=43.45  Aligned_cols=26  Identities=31%  Similarity=0.529  Sum_probs=23.1

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...|++.|.+|+|||..++.+.+.+.
T Consensus        86 ~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          86 NQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            55799999999999999999988763

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.84  E-value=0.013  Score=40.47  Aligned_cols=16  Identities=38%  Similarity=0.702  Sum_probs=14.2

Q ss_pred             cEEEEcCCCCcHHHHH
Q psy3632          56 GILLYGPPGTGKTLMA   71 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~   71 (121)
                      ..+|.|-+|||||||.
T Consensus        16 ~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEEccCCCCcccce
Confidence            3679999999999986

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.75  E-value=0.023  Score=43.24  Aligned_cols=26  Identities=31%  Similarity=0.488  Sum_probs=22.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...|++.|.+|+|||..++.+.+.+.
T Consensus       125 nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         125 NQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            45699999999999999999888763

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.71  E-value=0.023  Score=43.13  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=22.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...|++.|.+|+|||..++.+.+.+
T Consensus        91 ~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          91 DQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5679999999999999999988876

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.068  Score=36.44  Aligned_cols=45  Identities=20%  Similarity=0.212  Sum_probs=28.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEEE  114 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~~  114 (121)
                      ..++-+|+.|+|||...      .|...     .    ....|-..+.+.++|+..+...
T Consensus        77 ~~i~aYGqtgSGKTyT~------~G~~~-----~----~~~~gii~r~l~~l~~~~~~~~  121 (323)
T d1bg2a_          77 GTIFAYGQTSSGKTHTM------EGKLH-----D----PEGMGIIPRIVQDIFNYIYSMD  121 (323)
T ss_dssp             EEEEEECSTTSSHHHHH------TBSTT-----C----TTTBCHHHHHHHHHHHHHHHHC
T ss_pred             cceeeecccCCCCceec------cCCcc-----c----ccccchhhhHHHHHHhhhhccc
Confidence            35888999999999863      22110     0    0112334567888888877654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.50  E-value=0.025  Score=43.55  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=21.9

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ...|++.|.+|+|||..++.+.+.+
T Consensus       123 ~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         123 NQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4569999999999999999888776

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.42  E-value=0.028  Score=42.79  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=23.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+..|++.|.+|+|||..++.+.+.+.
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            356799999999999999999888763

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.40  E-value=0.065  Score=34.34  Aligned_cols=52  Identities=21%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             CCcccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC---CCccEEEEcCCCCcHHHH
Q psy3632          13 SFDFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ---HVKGILLYGPPGTGKTLM   70 (121)
Q Consensus        13 ~~~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~---~~~~vll~Gp~G~GKT~l   70 (121)
                      -.+|++  + |+++.+.+.+++.   .+..+.-.+...++   .++.+++..|+|||||..
T Consensus         9 ~~sF~~--l-~l~~~l~~~L~~~---g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a   63 (212)
T d1qdea_           9 VYKFDD--M-ELDENLLRGVFGY---GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT   63 (212)
T ss_dssp             CCCGGG--G-TCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred             ccChhh--C-CCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEeecccccchhhh
Confidence            345665  4 4776666554432   23333323332222   256799999999999984

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.32  E-value=0.042  Score=36.82  Aligned_cols=32  Identities=25%  Similarity=0.293  Sum_probs=22.7

Q ss_pred             HHHHhCCCCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          45 VVEQLGCQHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        45 ~~~~~~~~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      +...+....+..-+|.|..|||||.++-..+.
T Consensus        95 i~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~  126 (264)
T d1gm5a3          95 IRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL  126 (264)
T ss_dssp             HHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred             HHHHhhccCcceeeeeccccccccHHHHHHHH
Confidence            34444445566789999999999997654443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.20  E-value=0.044  Score=36.00  Aligned_cols=26  Identities=27%  Similarity=0.493  Sum_probs=22.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      .|.++|-=|+||||++-.+|..+...
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~   28 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAM   28 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            47789999999999998888887554

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.13  E-value=0.029  Score=43.10  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      ...|++.|.+|+|||..++.+.+.+.
T Consensus       121 nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         121 NQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45699999999999999998888764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.02  E-value=0.037  Score=36.98  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -++++|.-.+||||++.++.+.
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTS
T ss_pred             eEEEEcCCCCCHHHHHHHHhCC
Confidence            3889999999999999999874

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.059  Score=35.41  Aligned_cols=26  Identities=42%  Similarity=0.463  Sum_probs=20.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .+-++++|--|+||||++-.+|..+.
T Consensus        20 ~~iii~sGKGGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            33477789999999998777777663

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.93  E-value=0.042  Score=34.50  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=21.6

Q ss_pred             ccEEEEcC-CCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGP-PGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp-~G~GKT~l~~~la~~~~~~   81 (121)
                      +.+.++|- +|+||||++-.||..+...
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~   29 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAA   29 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence            34788888 4999999988888887544

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=92.86  E-value=0.024  Score=37.62  Aligned_cols=17  Identities=29%  Similarity=0.372  Sum_probs=14.6

Q ss_pred             CCccEEEEcCCCCcHHH
Q psy3632          53 HVKGILLYGPPGTGKTL   69 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~   69 (121)
                      ..+.+++.+|+|+|||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            45678999999999996

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.82  E-value=0.15  Score=32.16  Aligned_cols=21  Identities=43%  Similarity=0.379  Sum_probs=16.3

Q ss_pred             CccEEEEcCCCCcHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIG   75 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la   75 (121)
                      ++.+++.+|+|+|||. +..+.
T Consensus        38 g~dvi~~a~tGsGKTl-ay~lp   58 (206)
T d1s2ma1          38 GRDILARAKNGTGKTA-AFVIP   58 (206)
T ss_dssp             TCCEEEECCTTSCHHH-HHHHH
T ss_pred             CCCEEEecCCcchhhh-hhccc
Confidence            4569999999999995 44443

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.36  E-value=0.053  Score=34.50  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=21.3

Q ss_pred             CCccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          53 HVKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        53 ~~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      |.-++.+.|-...|||||+.+|...
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            3457999999999999999998764

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.074  Score=33.88  Aligned_cols=17  Identities=29%  Similarity=0.360  Sum_probs=14.9

Q ss_pred             CccEEEEcCCCCcHHHH
Q psy3632          54 VKGILLYGPPGTGKTLM   70 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l   70 (121)
                      ++.+++..|+|||||..
T Consensus        38 g~dvl~~A~TGsGKTla   54 (207)
T d1t6na_          38 GMDVLCQAKSGMGKTAV   54 (207)
T ss_dssp             TCCEEEECCTTSCHHHH
T ss_pred             CCCeEEEeccccccccc
Confidence            56799999999999874

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.25  Score=34.32  Aligned_cols=29  Identities=28%  Similarity=0.244  Sum_probs=19.6

Q ss_pred             CCCCCccEEEEcCCCCcHHHH-HHHHHHHh
Q psy3632          50 GCQHVKGILLYGPPGTGKTLM-ARQIGQML   78 (121)
Q Consensus        50 ~~~~~~~vll~Gp~G~GKT~l-~~~la~~~   78 (121)
                      ..+..+.+++.+.+|||||+. +.-++..+
T Consensus        12 ~~p~~g~~lv~A~AGsGKT~~l~~r~~~ll   41 (485)
T d1w36b1          12 RLPLQGERLIEASAGTGKTFTIAALYLRLL   41 (485)
T ss_dssp             GCCCSSCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEEcCchHHHHHHHHHHHHHH
Confidence            334455688899999999985 34444444

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.15  Score=32.94  Aligned_cols=17  Identities=29%  Similarity=0.446  Sum_probs=14.9

Q ss_pred             CccEEEEcCCCCcHHHH
Q psy3632          54 VKGILLYGPPGTGKTLM   70 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l   70 (121)
                      .+.+++..|+|||||..
T Consensus        54 g~dvi~~a~TGSGKTla   70 (222)
T d2j0sa1          54 GRDVIAQSQSGTGKTAT   70 (222)
T ss_dssp             TCCEEEECCTTSSHHHH
T ss_pred             CCCeEEEcCcchhhhhh
Confidence            56799999999999973

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.09  E-value=0.048  Score=36.71  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      -+.|+|-|.+||||+..++.+.
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3889999999999999999864

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.01  E-value=0.04  Score=37.27  Aligned_cols=21  Identities=24%  Similarity=0.339  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      |.|+|-|.+|||||..++.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999653

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.95  E-value=0.05  Score=34.52  Aligned_cols=25  Identities=28%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             CCCccEEEEcCCCCcHHHHHHHHHH
Q psy3632          52 QHVKGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        52 ~~~~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      +|.-++.+.|...+|||||+.+|.+
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            3445799999999999999999975

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.75  E-value=0.051  Score=37.72  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -|+|.+.|..++|||||+.++....+
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            56899999999999999999976654

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.13  Score=33.07  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=28.4

Q ss_pred             cccccccCCcHHHHHHHHHHHhhccCCChHHHHHhCCC---CCccEEEEcCCCCcHHHH
Q psy3632          15 DFNKMGIGGLDKEFTAIFRRAFASRVFPPEVVEQLGCQ---HVKGILLYGPPGTGKTLM   70 (121)
Q Consensus        15 ~~~~~~i~Gl~~~~~~i~~~~i~~~~~~~~~~~~~~~~---~~~~vll~Gp~G~GKT~l   70 (121)
                      .|++  + |++..+.+.+.+.   .+..+.-.+...++   ..+.+++..|+|||||..
T Consensus        13 sF~~--l-~L~~~l~~~L~~~---g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTla   65 (218)
T d2g9na1          13 SFDD--M-NLSESLLRGIYAY---GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT   65 (218)
T ss_dssp             CGGG--S-CCCHHHHHHHHHH---TCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHH
T ss_pred             CHHH--C-CCCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhh
Confidence            4554  3 3666555543332   23333333332222   256799999999999984

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.04  E-value=0.081  Score=35.59  Aligned_cols=27  Identities=26%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      ..+++.|++|+|||+++..++.....+
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~~~~   94 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQQGQ   94 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTCCTT
T ss_pred             ceEeeccCCCCChHHHHHHHHhhhccc
Confidence            348899999999999987655444333

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.047  Score=36.73  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -|.++||.++|||+|+..+.+..
T Consensus        34 vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          34 VVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            46689999999999999988753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.76  E-value=0.092  Score=34.90  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy3632          56 GILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      .+.|+|-|.+||||+..++.+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            3789999999999999998864

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.66  E-value=0.081  Score=35.77  Aligned_cols=24  Identities=29%  Similarity=0.162  Sum_probs=19.2

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHH
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ...+++.|++|+|||+++..++..
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHHh
Confidence            345999999999999987766543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.64  E-value=0.11  Score=33.42  Aligned_cols=26  Identities=12%  Similarity=0.162  Sum_probs=22.0

Q ss_pred             CccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          54 VKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      .-+|.+.|--++|||||+.+|....+
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHB
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcC
Confidence            44799999999999999998876555

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=90.63  E-value=0.4  Score=30.96  Aligned_cols=25  Identities=24%  Similarity=0.466  Sum_probs=19.1

Q ss_pred             CccEEEEcCCCCcHHH--HHHHHHHHh
Q psy3632          54 VKGILLYGPPGTGKTL--MARQIGQML   78 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~--l~~~la~~~   78 (121)
                      .+.+++..|+|||||.  ++-++...+
T Consensus        58 g~dvvi~a~TGsGKTlayllp~l~~l~   84 (238)
T d1wrba1          58 HRDIMACAQTGSGKTAAFLIPIINHLV   84 (238)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCcceeeHHHHHHHHH
Confidence            4579999999999998  455555543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.57  E-value=0.088  Score=32.93  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQ   76 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~   76 (121)
                      -+|.+.|-..+|||||+.+|.+
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            4689999999999999999975

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.31  E-value=0.08  Score=35.45  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -++++|...+||||++.+|.+.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            38899999999999999998753

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.26  E-value=0.054  Score=34.23  Aligned_cols=17  Identities=29%  Similarity=0.307  Sum_probs=14.8

Q ss_pred             CccEEEEcCCCCcHHHH
Q psy3632          54 VKGILLYGPPGTGKTLM   70 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l   70 (121)
                      ++.+++..|+|||||..
T Consensus        38 G~dvii~a~TGSGKTla   54 (209)
T d1q0ua_          38 GESMVGQSQTGTGKTHA   54 (209)
T ss_dssp             TCCEEEECCSSHHHHHH
T ss_pred             CCCeEeeccccccccee
Confidence            45799999999999974

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.99  E-value=0.095  Score=33.31  Aligned_cols=17  Identities=35%  Similarity=0.370  Sum_probs=14.8

Q ss_pred             CccEEEEcCCCCcHHHH
Q psy3632          54 VKGILLYGPPGTGKTLM   70 (121)
Q Consensus        54 ~~~vll~Gp~G~GKT~l   70 (121)
                      ++.+++..|+|+|||..
T Consensus        40 g~dvl~~a~TGsGKTla   56 (206)
T d1veca_          40 GRDILARAKNGTGKSGA   56 (206)
T ss_dssp             TCCEEEECCSSSTTHHH
T ss_pred             CCCEEeeccCccccccc
Confidence            56799999999999973

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=89.99  E-value=0.095  Score=35.08  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=18.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          56 GILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      ..++.-|.|+|||.++-+++..+
T Consensus       130 ~~il~~pTGsGKT~i~~~i~~~~  152 (282)
T d1rifa_         130 RRILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CceeEEEcccCccHHHHHHHHHh
Confidence            35667799999999888777544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.56  E-value=0.13  Score=33.99  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      -|.++|-=|+||||++-.+|..+.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA   27 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALA   27 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            367799999999998777776653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.36  E-value=0.17  Score=32.64  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      .++++|-..+|||||+.+|...++.
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            4889999999999999999766543

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.28  E-value=0.17  Score=31.95  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=19.6

Q ss_pred             EEEE-cCCCCcHHHHHHHHHHHhcCC
Q psy3632          57 ILLY-GPPGTGKTLMARQIGQMLNAR   81 (121)
Q Consensus        57 vll~-Gp~G~GKT~l~~~la~~~~~~   81 (121)
                      |.++ +-.|+||||++-.+|..+...
T Consensus         5 Iav~~~kGGvGKTtia~nLA~~la~~   30 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLSVALGDR   30 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhC
Confidence            5566 668999999999998887543

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.16  E-value=0.13  Score=32.29  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy3632          57 ILLYGPPGTGKTLMARQIGQM   77 (121)
Q Consensus        57 vll~Gp~G~GKT~l~~~la~~   77 (121)
                      ++++|+..+|||..|..++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            688999999999999988754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.07  E-value=0.12  Score=34.35  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHh
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQML   78 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~   78 (121)
                      -.++++|-|-+||||++.++.+.-
T Consensus       113 ~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         113 IRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEEecCccchhhhhhhhhccc
Confidence            348999999999999999998753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.04  E-value=0.13  Score=33.74  Aligned_cols=33  Identities=15%  Similarity=0.213  Sum_probs=24.5

Q ss_pred             HHhCCCCCccEEEEcCCCCcHHHHHHHHHHHhc
Q psy3632          47 EQLGCQHVKGILLYGPPGTGKTLMARQIGQMLN   79 (121)
Q Consensus        47 ~~~~~~~~~~vll~Gp~G~GKT~l~~~la~~~~   79 (121)
                      +...-++..+|.+.|-.++|||||+..|...++
T Consensus        17 ~~~~~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g   49 (245)
T d1r5ba3          17 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTG   49 (245)
T ss_dssp             HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTT
T ss_pred             HHhcCCCceEEEEEeeCCCCHHHHHHHHHHHcC
Confidence            333334455799999999999999999865444

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.94  E-value=0.18  Score=31.86  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=18.9

Q ss_pred             EEE-EcCCCCcHHHHHHHHHHHhcC
Q psy3632          57 ILL-YGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        57 vll-~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      |.+ .+-.|+||||++-.+|..+..
T Consensus         4 Iav~s~KGGvGKTtia~nlA~~la~   28 (232)
T d1hyqa_           4 ITVASGKGGTGKTTITANLGVALAQ   28 (232)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHHHh
Confidence            444 488899999999988887744

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.40  E-value=0.18  Score=32.91  Aligned_cols=26  Identities=12%  Similarity=0.186  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcC
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNA   80 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~   80 (121)
                      -++.+.|-.++||||++..|.-.++.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            47999999999999999998866653

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=88.15  E-value=0.18  Score=35.77  Aligned_cols=31  Identities=32%  Similarity=0.364  Sum_probs=26.1

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCee
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKI   85 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~   85 (121)
                      +..+|.|.+|+|||.++..++...+.+.+.+
T Consensus        32 ~~q~l~GltGS~ka~~iA~l~~~~~rp~LVV   62 (413)
T d1t5la1          32 KHQTLLGATGTGKTFTISNVIAQVNKPTLVI   62 (413)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred             CcEEEeCCCCcHHHHHHHHHHHHhCCCEEEE
Confidence            3588999999999999999999988775543

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=86.98  E-value=0.26  Score=33.82  Aligned_cols=16  Identities=31%  Similarity=0.706  Sum_probs=13.5

Q ss_pred             ccEEEEcCCCCcHHHH
Q psy3632          55 KGILLYGPPGTGKTLM   70 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l   70 (121)
                      ..++-+|++|+|||..
T Consensus        81 ~ti~aYG~tgSGKT~T   96 (354)
T d1goja_          81 GTVFAYGQTGAGKSYT   96 (354)
T ss_dssp             EEEEEECSTTSSHHHH
T ss_pred             eeEEecccCCCCccee
Confidence            3588899999999975

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.52  E-value=0.23  Score=31.39  Aligned_cols=21  Identities=24%  Similarity=0.112  Sum_probs=16.8

Q ss_pred             ccEEEEcCCCCcHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIG   75 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la   75 (121)
                      ..+++..|+|+|||+.+-..+
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~   63 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPL   63 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccc
Confidence            469999999999999764444

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.66  E-value=0.4  Score=28.58  Aligned_cols=20  Identities=30%  Similarity=0.585  Sum_probs=15.5

Q ss_pred             EEEcCCCCcHHH-HHHHHHHH
Q psy3632          58 LLYGPPGTGKTL-MARQIGQM   77 (121)
Q Consensus        58 ll~Gp~G~GKT~-l~~~la~~   77 (121)
                      +++||-.+|||+ |++.+-+.
T Consensus         6 ~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHHH
Confidence            578999999999 66665443

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=84.36  E-value=0.96  Score=30.70  Aligned_cols=39  Identities=26%  Similarity=0.377  Sum_probs=26.9

Q ss_pred             ccEEEEcCCCCcHHHHHHHHHHHhcCCCCeeecCcccchhhhchhHHHHHHHHHHHHHH
Q psy3632          55 KGILLYGPPGTGKTLMARQIGQMLNAREPKIVNGPQVLDKYVGESEANVRRLFADAEEE  113 (121)
Q Consensus        55 ~~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~a~~~  113 (121)
                      ..++-+|..|+|||...-      +..              .|--.+.++.+|+.....
T Consensus        84 ~~i~aYGqtgSGKT~T~~------G~~--------------~Giipr~~~~lf~~~~~~  122 (342)
T d1f9va_          84 VCIFAYGQTGSGKTFTML------NPG--------------DGIIPSTISHIFNWINKL  122 (342)
T ss_dssp             EEEEEECCTTSSHHHHHH------STT--------------TSHHHHHHHHHHHHHHHH
T ss_pred             cceeeeeccCCccccccc------cCc--------------CchhHHHHHHHHhhhhhh
Confidence            357789999999998642      211              244466788889877654

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=82.10  E-value=0.63  Score=32.71  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=26.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhcCCCCeee
Q psy3632          56 GILLYGPPGTGKTLMARQIGQMLNAREPKIV   86 (121)
Q Consensus        56 ~vll~Gp~G~GKT~l~~~la~~~~~~~~~~~   86 (121)
                      .+.|.|.+|++|+.++-+++...+.+.+.+.
T Consensus        30 ~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt   60 (408)
T d1c4oa1          30 FVTLLGATGTGKTVTMAKVIEALGRPALVLA   60 (408)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             cEEEecCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence            4789999999999999999999988765543