Psyllid ID: psy3640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610------
Protein Sequence
LHGVEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDLDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD
Secondary Structure (PSIPRED)
ccccccEEEEEccccEEEEEEEccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccEEEEEccccEEEEEEEEEcccccEEEEcccEEEEEEccccccEEEEEEcccccEEEEEEEcccHHHHHcccEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccccEEEEEEcccHcHHHHEccccEEEEEcccccEEEEEcccEEEEEEcccccEEEEcccccccccEEEEEEcccccccEEEEcccccccEEEEEEccccccEEEccccccccccccccEEEEEEEccccccEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcccccccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccc
Coil and Loop (DISEMBL)
lhgvekcvgcygngsfVDFCVLLLLNIGNEEVITQVQafdksvfpplsfqFITTMKLLRFLLRyyppgitleytqgkdikmktidlldldafsgitleytqgkdikmktidlldldensycylsFKTFLffsssnvseitkqvyskepliTASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKshllpltnitfdkfgtrcltgsydrtcklwdiksgheictyrghQNVVYAVAfsepygcltgsydrtcklwdiksgheictyrghQNVVYAVAFsepygdkiltgsFDKTLKLWASAKEECIQTyrghsaevtfspdqstfcscsmdhtarifntnsgqemhtlkahtgpvislqfssdrnmlitgsfdssIVVWDIQYqfgtrnayaestyrashkpihiltghsqEISNCLfnfsnsmiasssldgtakLWDVRTMCCFYtlknhedevLDIAFdysgsklatassdqtanLWTVGGAVELLQTFYGHSNEVSKVLDIAFdysgsklatassdqtAKLWTVGGAVELLQTFyghsnevskvsfhptgklvlsgsqdttcrlwstesGECIQVLKAHeddvfscgfnyngdtiitaskdntcciwrsmnrd
Flexible Loop (DISEMBL)
LHGVEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITleytqgkdikMKTIDLLDLDAFSGITleytqgkdikmKTIDLLDLDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLatassdqtaKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGdtiitaskdntcciWRSMNRD
Low Complexity Region (SEG)
LHGVEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDLDENSYCYlsfktflffsssNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD
Disordered region (IsUnstruct)
***VEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDLDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR*****
Disordered Region (DISOPRED)
*HGVEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDLDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN**
Disordered Region (DISEMBL)
LHGVEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDLDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD
Disordered Region (DISPRO)
LHGVEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDLDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LHGVEKCVGCYGNGSFVDFCVLLLLNIGNEEVITQVQAFDKSVFPPLSFQFITTMKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDLDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVxxxxxxxxxxxxxxxxxxxxxRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	616	2.2.26 [Sep-21-2011]
Q6P2Y2	415	Outer row dynein assembly	yes	N/A	0.663	0.985	0.363	2e-83
Q5FWQ6	415	Outer row dynein assembly	N/A	N/A	0.663	0.985	0.361	1e-82
Q4R8E7	415	Outer row dynein assembly	N/A	N/A	0.663	0.985	0.365	5e-82
Q0P593	415	Outer row dynein assembly	yes	N/A	0.663	0.985	0.369	7e-82
Q5BK30	415	Outer row dynein assembly	yes	N/A	0.663	0.985	0.361	9e-82
Q8N136	415	Outer row dynein assembly	yes	N/A	0.663	0.985	0.363	1e-81
Q1LV15	415	Outer row dynein assembly	yes	N/A	0.663	0.985	0.348	1e-79
Q3Y8L7	446	Outer row dynein assembly	N/A	N/A	0.662	0.914	0.355	4e-77
Q8YRI1	1526	Uncharacterized WD repeat	yes	N/A	0.657	0.265	0.362	4e-70
Q00808	1356	Vegetative incompatibilit	no	N/A	0.727	0.330	0.346	1e-66

>sp|Q6P2Y2|WDR69_XENTR Outer row dynein assembly protein 16 homolog OS=Xenopus tropicalis GN=wdr69 PE=2 SV=1

 Score =  310 bits (795), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 263/476 (55%), Gaps = 67/476 (14%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           M+L RFLLRY+PPGI LEY +                          G ++K K IDLL+
Sbjct: 1   MRLKRFLLRYFPPGIILEYEK--------------------------GGELKTKAIDLLE 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                 +++V  + +++   EPLITAS   Q++Q I++LQ+K+ +  +
Sbjct: 35  LS---------------PTTDVDLVVEEIQKAEPLITASRTQQVKQLILRLQEKIGQQDS 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +++  FK+L++H+LPLTN+ F+K G+  +TGSYDRTCK+WD  SG E+ T  GH+NVVYA
Sbjct: 80  RQFYLFKVLRAHILPLTNVAFNKSGSSFITGSYDRTCKVWDTASGEELHTLEGHRNVVYA 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           + F+ PYG    TGS+D+TCKLW  ++G    T+RGH   +  +AF+ P    I TGS D
Sbjct: 140 IQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLAFN-PQSTLIATGSMD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
            T KLW     E   T  GH+AE+   +F+       + S DHT  ++   SG+ +HTL 
Sbjct: 199 TTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLI 258

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H G + S QF+ D +++ T S D S  +WD                  + K +  LTGH
Sbjct: 259 GHRGEISSAQFNWDCSLIATASMDKSCKLWD----------------SLNGKCVATLTGH 302

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
             E+ +  F+ +  ++A++S DGTA+++   +  C   L+ HE E+  I F+  G+++ T
Sbjct: 303 EDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRILT 362

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           ASSD+T+ LW      E LQ   GH++E   +   AF+Y G+ + T S D T ++W
Sbjct: 363 ASSDKTSRLWNPHTG-ECLQVLKGHTDE---IFSCAFNYEGNTIITGSKDNTCRIW 414

May play a role in axonemal outer row dynein assembly.
Xenopus tropicalis (taxid: 8364)

>sp|Q5FWQ6|WDR69_XENLA Outer row dynein assembly protein 16 homolog OS=Xenopus laevis GN=wdr69 PE=2 SV=1

 Score =  307 bits (787), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 261/476 (54%), Gaps = 67/476 (14%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           M+L RFLLRY+PPGI LEY +                          G ++K K IDLL+
Sbjct: 1   MRLKRFLLRYFPPGIILEYEK--------------------------GGELKTKAIDLLE 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                 +++V  +  ++   EPLITAS   Q++Q I++LQ+K+ +  +
Sbjct: 35  LS---------------PTTDVDLVVGEIQKAEPLITASRTQQVKQLILRLQEKIGQQDS 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +++  FK+L++H+LPLTN+ F+K G+  +TGSYDRTCK+WD  SG E+ T  GH+NVVYA
Sbjct: 80  RQFYLFKVLRAHILPLTNVAFNKSGSSFITGSYDRTCKVWDTASGEELHTLEGHRNVVYA 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           + F+ PYG    TGS+D+TCKLW  ++G    T+RGH   +  + F+ P    I TGS D
Sbjct: 140 IQFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLVFN-PQSTLIATGSMD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
            T KLW     E   T  GH+AE+   +F+       + S DHT  ++   SG+ +HTL 
Sbjct: 199 TTAKLWDIQSGEEALTLSGHAAEIISLSFNTTGDRLITGSFDHTVSVWEIPSGRRIHTLI 258

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H G + S QF+ D +++ T S D S  +WD                  + K +  LTGH
Sbjct: 259 GHRGEISSAQFNWDCSLIATASMDKSCKLWD----------------SLNGKCVATLTGH 302

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
             E+ +  F+ +  ++A++S DGTA+++   +  C   L+ HE E+  I F+  G+++ T
Sbjct: 303 DDEVLDVTFDSTGQLVATASADGTARVYSASSRKCLAKLEGHEGEISKICFNAQGNRIVT 362

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           ASSD+T+ LW      E LQ   GH++E   +   AF+Y G+ + T S D T ++W
Sbjct: 363 ASSDKTSRLWDPHTG-ECLQVLKGHTDE---IFSCAFNYEGNTIITGSKDNTCRIW 414

May play a role in axonemal outer row dynein assembly.

Xenopus laevis (taxid: 8355)

>sp|Q4R8E7|WDR69_MACFA Outer row dynein assembly protein 16 homolog OS=Macaca fascicularis GN=WDR69 PE=2 SV=1

 Score =  305 bits (782), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 174/476 (36%), Positives = 263/476 (55%), Gaps = 67/476 (14%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL  FLLRYYPPGI LEY +  ++                          K K+IDLLD
Sbjct: 1   MKLKSFLLRYYPPGIMLEYEKHGEL--------------------------KTKSIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                 S++VS + +++   EPLITAS   Q++  I +LQ+KL +   
Sbjct: 35  LG---------------PSTDVSALVEEIQKAEPLITASRTEQVKLLIQRLQEKLGQHSN 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
             +  FK+LK+H+LPLTN+  +K G+  +TGSYDRTCKLWD  SG E+ T  GH+NVVYA
Sbjct: 80  HTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYA 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           +AF+ PYG    TGS+D+TCKLW +++G    T+RGH   +  ++F+ P    + TGS D
Sbjct: 140 IAFNNPYGDKTATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFN-PQSTLVATGSMD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
            T KLW     E + T RGHSAE+   +F+       + S DHT  +++ ++G +++ L 
Sbjct: 199 TTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGGKVNILI 258

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H   + S  F+ D ++++TGS D + ++WD                  + K +  LTGH
Sbjct: 259 GHCAEISSALFNWDCSLILTGSMDKTCMLWD----------------ATNGKCVATLTGH 302

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
             EI +  F+++  +IA++S DGTA+++   T  C   L+ HE E+  I+F+  G++L T
Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNRLLT 362

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
            SSD+TA +W      + LQ   GH++E   +    F+Y G+ + T S D T ++W
Sbjct: 363 GSSDKTARIWDAQTG-QCLQVLEGHTDE---IFSCTFNYKGNIVITGSKDNTCRIW 414

May play a role in axonemal outer row dynein assembly.

Macaca fascicularis (taxid: 9541)

>sp|Q0P593|WDR69_BOVIN Outer row dynein assembly protein 16 homolog OS=Bos taurus GN=WDR69 PE=2 SV=1

 Score =  305 bits (781), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 176/476 (36%), Positives = 264/476 (55%), Gaps = 67/476 (14%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL   LLRYYPPGI LEY +                 SG          +K K+IDLLD
Sbjct: 1   MKLKSLLLRYYPPGIMLEYEK-----------------SG---------QLKTKSIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           LD                S++VS + +++   EPLITAS   Q++  I +LQ KL +   
Sbjct: 35  LD---------------PSTDVSALVEEIQKAEPLITASRSDQVKLLIQRLQNKLGQHSN 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
            ++  FK+L++H+LPLTN+  +K G+  +TGSYDRTCKLWD  SG E+ T  GH+NVVYA
Sbjct: 80  HKFYLFKVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYA 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           +AF+ PYG    TGS+D+TCKLW +++G    T+RGH   +  ++F+ P    + TGS D
Sbjct: 140 IAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFN-PQSTLVATGSMD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
            T KLW     E + T  GHSAE+   +F+   +   + S DHT  ++  ++G++++TL 
Sbjct: 199 TTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLI 258

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H   + S  F+ D ++++TGS D +  +WD                  + K +  LTGH
Sbjct: 259 GHCAEISSAVFNWDCSLILTGSMDKTCKLWDA----------------VNGKCVATLTGH 302

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
             EI +  F+++  +IA++S DGTA+++   T  C   L+ HE E+  I+F+  G++L T
Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLT 362

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
            SSD+TA +W      + LQ   GH++E   +   AF+Y G  + T S D T ++W
Sbjct: 363 GSSDKTARIWDAQTG-QCLQVLEGHTDE---IFSCAFNYKGDIIITGSKDNTCRIW 414

May play a role in axonemal outer row dynein assembly.

Bos taurus (taxid: 9913)

>sp|Q5BK30|WDR69_RAT Outer row dynein assembly protein 16 homolog OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1

 Score =  305 bits (780), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 263/476 (55%), Gaps = 67/476 (14%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL   LLRYYPPGI LEY +                          G ++K K+IDLL+
Sbjct: 1   MKLKSLLLRYYPPGIMLEYEK--------------------------GGELKTKSIDLLE 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                 S++V+ +  ++   EPLITAS   Q+   + +LQ+KL++   
Sbjct: 35  LS---------------PSTDVNTLVGEIQKVEPLITASRTKQVRLLVQRLQEKLRQHCD 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
             +  FK+L++H+LPLTN+  +K G+  +TGSYDRTCK+WD  SG E+ T  GH+NVVYA
Sbjct: 80  HNFYLFKVLRAHILPLTNVALNKAGSCFITGSYDRTCKVWDTASGEELHTLEGHRNVVYA 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           +AF+ PYG    TGS+D+TCKLW  ++G    T+RGH   +  ++F+ P    + TGS D
Sbjct: 140 IAFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFN-PQSTVVATGSMD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
            T KLW     E + T  GH AE+   +F        + S DHT  +++ ++G+++HTL 
Sbjct: 199 TTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRIITGSFDHTVVVWDASTGRKVHTLI 258

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H   + S  FS D ++++TGS D + ++WD                  S K +  LTGH
Sbjct: 259 GHCAEISSALFSWDCSLILTGSMDKTCMLWDA----------------TSGKCVATLTGH 302

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
             EI +  F+++  +IA++S DGTA++++  T  C   L+ HE E+  I+F+  G++L T
Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRLLT 362

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
            SSD+TA +W V    + LQ   GH++E   +   AF+Y G+ + T S D + ++W
Sbjct: 363 GSSDKTARIWDVQTG-QCLQVLEGHTDE---IFSCAFNYKGNIVITGSKDNSCRIW 414

May play a role in axonemal outer row dynein assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q8N136|WDR69_HUMAN Outer row dynein assembly protein 16 homolog OS=Homo sapiens GN=WDR69 PE=1 SV=1

 Score =  304 bits (778), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 173/476 (36%), Positives = 262/476 (55%), Gaps = 67/476 (14%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL   LLRYYPPGI LEY +  ++                          K K+IDLLD
Sbjct: 1   MKLKSLLLRYYPPGIMLEYEKHGEL--------------------------KTKSIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                 S++VS + +++   EPL+TAS   Q++  I +LQ+KL +   
Sbjct: 35  LG---------------PSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSN 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
             +  FK+LK+H+LPLTN+  +K G+  +TGSYDRTCKLWD  SG E+ T  GH+NVVYA
Sbjct: 80  HTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYA 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           +AF+ PYG    TGS+D+TCKLW +++G    T+RGH   +  ++F+ P    + TGS D
Sbjct: 140 IAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFN-PQSTLVATGSMD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
            T KLW     E + T RGHSAE+   +F+       + S DHT  +++ ++G++++ L 
Sbjct: 199 TTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILI 258

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H   + S  F+ D ++++TGS D +  +WD                  + K +  LTGH
Sbjct: 259 GHCAEISSASFNWDCSLILTGSMDKTCKLWDA----------------TNGKCVATLTGH 302

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
             EI +  F+++  +IA++S DGTA+++   T  C   L+ HE E+  I+F+  G+ L T
Sbjct: 303 DDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLT 362

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
            SSD+TA +W      + LQ   GH++E   +   AF+Y G+ + T S D T ++W
Sbjct: 363 GSSDKTARIWDAQTG-QCLQVLEGHTDE---IFSCAFNYKGNIVITGSKDNTCRIW 414

May play a role in axonemal outer row dynein assembly.

Homo sapiens (taxid: 9606)

>sp|Q1LV15|WDR69_DANRE Outer row dynein assembly protein 16 homolog OS=Danio rerio GN=wdr69 PE=2 SV=2

 Score =  297 bits (761), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/476 (34%), Positives = 258/476 (54%), Gaps = 67/476 (14%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           M+L R  +RYYPPGI L+Y +G  +                          + K IDLL+
Sbjct: 1   MRLKRMHIRYYPPGIFLDYEKGGQL--------------------------RTKCIDLLN 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                  ++V E+  ++ + EPLIT+S + Q++  I KLQ+K+ +   
Sbjct: 35  LT---------------PETDVEELVLEIRAAEPLITSSCVEQVKLLICKLQEKVGQKDE 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +++  F+ L++H+LPLTN+ F+K G+  +TGSYDRTCK+WD  SG E+ T  GH+NVVYA
Sbjct: 80  RKFYLFRALQAHILPLTNVAFNKSGSCFITGSYDRTCKIWDTASGEELHTLEGHRNVVYA 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           +AF+ PYG    TGS+D+TCKLW  ++G    T+RGH   +  +AF+ P    + TGS D
Sbjct: 140 IAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTAEIVCLAFN-PQSTLVATGSMD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
            T KLW     E + T  GH AE+    F+       + S DHTA +++  SG+++H L 
Sbjct: 199 TTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLS 258

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H G +  +QF+ D +++ T S D S  VWD +                  + +  L GH
Sbjct: 259 GHRGEISCVQFNWDCSLIATASLDKSCKVWDAE----------------GGQCLATLLGH 302

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
           + E+ +  FN++  +IA++S DGT++++   T  C   L+ H+ E+  + F+  GS++ T
Sbjct: 303 NDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLT 362

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           AS D+T+ +W V      LQ   GHS+E   +   AF+Y G  + T S D T ++W
Sbjct: 363 ASVDKTSRVWCVKTGA-CLQVLEGHSDE---IFSCAFNYEGDTIITGSKDNTCRIW 414

Required for axonemal dynein assembly and ciliary motility in ciliated organs, including Kupffer's vesicle, during embryogenesis.

Danio rerio (taxid: 7955)

>sp|Q3Y8L7|WDR69_CHLRE Outer row dynein assembly protein 16 OS=Chlamydomonas reinhardtii GN=ODA16 PE=1 SV=1

 Score =  289 bits (740), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 169/475 (35%), Positives = 253/475 (53%), Gaps = 67/475 (14%)

Query: 56  KLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLDL 115
           KL +FLLRYYPPGI L+Y +                  G+         +K K IDLLDL
Sbjct: 4   KLRKFLLRYYPPGIILQYER-----------------DGV---------MKQKPIDLLDL 37

Query: 116 DENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFAQ 175
             +                +V  +  Q+  +EPLI+ +    L Q I +L  K+ E    
Sbjct: 38  TPDV---------------DVEVLLSQIIRQEPLISENRRPALRQLIHRLIDKMLEQQHH 82

Query: 176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV 235
            +  FK+L++H+LPLTN  F+K G R +TGSYDRTCK+W+  +G E+ T  GH+NVVYA+
Sbjct: 83  SFTLFKVLRAHILPLTNCAFNKSGDRFITGSYDRTCKVWNTFTGEEVFTLEGHKNVVYAI 142

Query: 236 AFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 293
           AF+ PYG   +TGS+D+TCKLWD  +G    T +GHQ  +  ++F+ P    I TGS D 
Sbjct: 143 AFNNPYGDKIVTGSFDKTCKLWDAYTGQLYYTLKGHQTEIVCLSFN-PQSTIIATGSMDN 201

Query: 294 TLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA 350
           T KLW     +   T  GH AE+    F+       + S DH +R+++  +GQ +H L  
Sbjct: 202 TAKLWDVETGQERATLAGHRAEIVSLGFNTGGDLIVTGSFDHDSRLWDVRTGQCVHVLSG 261

Query: 351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410
           H G V S QF+    ++++GS D +  +WD++                S + + +  GH+
Sbjct: 262 HRGEVSSTQFNYAGTLVVSGSIDCTSRLWDVR----------------SGRCLSVKQGHT 305

Query: 411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA 470
            E+ +  F+ + + + S+S DG+A+L+   T  C +TL  HE E+  +AF+  G++L TA
Sbjct: 306 DEVLDVAFDAAGTKMVSASADGSARLYHTLTGVCQHTLVGHEGEISKVAFNPQGTRLITA 365

Query: 471 SSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           SSD+T  LW      E LQ   GH++E   +   AF+Y G  + T S D T ++W
Sbjct: 366 SSDKTCRLWDCDTG-ECLQVLEGHTDE---IFSCAFNYEGDFIITGSKDNTCRIW 416

Functions as a cargo-specific adapter between intraflagellar transport (IFT) particles and outer row dynein. Required for efficient dynein-mediated transport into the flagellar compartment.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  266 bits (680), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 157/433 (36%), Positives = 235/433 (54%), Gaps = 28/433 (6%)

Query: 183  LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
            L+ H   + ++ F   G    +G  D+  +LWDI SG+ + T +G+ + V  + FS P G
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFS-PNG 1128

Query: 243  C--LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 300
                 GS D+  +LWDI S   + T +GH N V AVAFS P G  + +GS D+T++LW  
Sbjct: 1129 VTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFS-PDGATLASGSGDQTVRLWDI 1187

Query: 301  AKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVIS 357
            +  +C+   +GH++    V F+PD ST  S S D T R++  NS + + T + HT  V S
Sbjct: 1188 SSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNS 1247

Query: 358  LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
            + F+ D +ML +GS D ++ +WDI                +S K +H   GH+  +++  
Sbjct: 1248 VVFNPDGSMLASGSSDKTVRLWDI----------------SSSKCLHTFQGHTNWVNSVA 1291

Query: 418  FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN 477
            FN   SM+AS S D T +LW++ +  C +T + H   V  + F   G+ LA+ S DQT  
Sbjct: 1292 FNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVR 1351

Query: 478  LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537
            LW++    E L TF GH+N V  V+   F   G+ LA+ S DQT +LW++    + L T 
Sbjct: 1352 LWSISSG-ECLYTFLGHTNWVGSVI---FSPDGAILASGSGDQTVRLWSISSG-KCLYTL 1406

Query: 538  YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT 597
             GH+N V  + F P G L+ SGS D T RLW+  SGEC+  L  H + V S  F+ +G  
Sbjct: 1407 QGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLI 1466

Query: 598  IITASKDNTCCIW 610
            + + S D T  +W
Sbjct: 1467 LASGSDDETIKLW 1479

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  254 bits (650), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 168/485 (34%), Positives = 233/485 (48%), Gaps = 37/485 (7%)

Query: 141  KQVYSKEPL---ITASVITQLEQSIMKLQKKLKEGF--------AQRYEKFKMLKSHLLP 189
            + +  K PL    +A V    +  I K+ KK + G+        A+     + L+ H   
Sbjct: 784  RMIIEKAPLQAYTSALVFAPTDSMIKKIFKKEEPGWISTISVVEAEWNACTQTLEGHGSS 843

Query: 190  LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-EPYGCLTGSY 248
            + ++ F   G R  +GS D+T K+WD  SG    T  GH   V++VAFS +     +GS 
Sbjct: 844  VLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERVASGSD 903

Query: 249  DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT 308
            D+T K+WD  SG    T  GH   V +VAFS P G ++ +GS D T+K+W +A   C QT
Sbjct: 904  DKTIKIWDAASGTCTQTLEGHGGRVQSVAFS-PDGQRVASGSDDHTIKIWDAASGTCTQT 962

Query: 309  YRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRN 365
              GH + V    FSPD     S S D T +I++T SG    TL+ H G V S+ FS D  
Sbjct: 963  LEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQ 1022

Query: 366  MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI 425
             + +GS D +I +WD                 AS      L GH   + + +F+     +
Sbjct: 1023 RVASGSDDKTIKIWDT----------------ASGTCTQTLEGHGGWVQSVVFSPDGQRV 1066

Query: 426  ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV 485
            AS S D T K+WD  +  C  TL+ H D V  +AF   G ++A+ S D T  +W      
Sbjct: 1067 ASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGT 1126

Query: 486  ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVS 545
               QT  GH   V  V   AF   G ++A+ S D T K+W         QT  GH   V 
Sbjct: 1127 -CTQTLEGHGGWVHSV---AFSPDGQRVASGSIDGTIKIWDAASGT-CTQTLEGHGGWVQ 1181

Query: 546  KVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDN 605
             V+F P G+ V SGS D T ++W T SG C Q L+ H   V S  F+ +G  + + S DN
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDN 1241

Query: 606  TCCIW 610
            T  IW
Sbjct: 1242 TIKIW 1246

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	616
156554779	420	PREDICTED: WD repeat-containing protein	0.668	0.980	0.414	1e-102
383862794	414	PREDICTED: outer row dynein assembly pro	0.665	0.990	0.398	1e-101
380023779	417	PREDICTED: outer row dynein assembly pro	0.670	0.990	0.400	1e-101
332017105	414	WD repeat-containing protein 69 [Acromyr	0.665	0.990	0.394	6e-99
110759973	416	PREDICTED: WD repeat-containing protein	0.670	0.992	0.391	8e-95
403267256	460	PREDICTED: outer row dynein assembly pro	0.741	0.993	0.367	2e-94
195996275	415	hypothetical protein TRIADDRAFT_49686 [T	0.663	0.985	0.385	4e-92
350408500	416	PREDICTED: WD repeat-containing protein	0.675	1.0	0.369	1e-90
340369248	416	PREDICTED: WD repeat-containing protein	0.668	0.990	0.384	3e-90
340719878	416	PREDICTED: WD repeat-containing protein	0.675	1.0	0.368	5e-90

>gi|156554779|ref|XP_001603367.1| PREDICTED: WD repeat-containing protein 69-like [Nasonia vitripennis]

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/521 (41%), Positives = 296/521 (56%), Gaps = 109/521 (20%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKLL+FLLRY+PPGI LEY                          TQG D+K K IDLLD
Sbjct: 1   MKLLKFLLRYFPPGIALEY--------------------------TQGGDVKTKMIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                + +++  + + + + EP+IT  V+ QL +++ KLQ K+ +   
Sbjct: 35  LS---------------AKTDIRGLAESIKAAEPVITDGVMDQLVETLQKLQAKVCDAGE 79

Query: 175 --QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV 232
             +R+ K K LK+HLLP+TNI FDK G RC                              
Sbjct: 80  DEKRFYKCKTLKTHLLPITNIAFDKLGKRC------------------------------ 109

Query: 233 YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
                      LTGSYDRTCK+WDI+SG E+ T  GH+NVVYAV+F++P  DKI+TGSFD
Sbjct: 110 -----------LTGSYDRTCKVWDIESGAELLTLEGHKNVVYAVSFNKPASDKIVTGSFD 158

Query: 293 KTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
           K+ ++W S    C+ +  GH AEV    FSP QS   + SMD TARIF+ +SGQE+ TLK
Sbjct: 159 KSARVWCSRTGHCLVSLWGHDAEVVVARFSPTQSKVATGSMDATARIFHISSGQELGTLK 218

Query: 350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH 409
            H+  VI+L +SSD N ++TGSFD S+ +WD +                +++   +L GH
Sbjct: 219 GHSAEVIALHYSSDGNEIVTGSFDRSVSLWDTR----------------TYQRTSVLLGH 262

Query: 410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVR-TMCCFYTLKNHEDEVLDIAFDYSGSKLA 468
            +EISNCL+NF  S+IAS SLD TA++WD R T  C  +L  HEDEVLD+AFD  G+KLA
Sbjct: 263 QEEISNCLYNFDESLIASCSLDKTARIWDRRMTDSCLASLTGHEDEVLDLAFDSKGNKLA 322

Query: 469 TASSDQTANLWTVG-GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV 527
           TASSD TA +W +  G    +     H  EVSKV    F  SG +L TAS D++A+LW+V
Sbjct: 323 TASSDTTARVWDLASGEFPQVAKMEAHQEEVSKV---CFSPSGRQLLTASLDRSARLWSV 379

Query: 528 GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
               + +QT  GH+++V   +F  +G  +++ S+D+TC +W
Sbjct: 380 ESG-QCVQTLAGHTDDVFSCAFSYSGDTIVTASKDSTCLIW 419

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862794|ref|XP_003706868.1| PREDICTED: outer row dynein assembly protein 16 homolog [Megachile rotundata]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/517 (39%), Positives = 286/517 (55%), Gaps = 107/517 (20%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKLL+FLLRY+PPG+ LEY                           QG D+K K IDLLD
Sbjct: 1   MKLLKFLLRYFPPGLALEYL--------------------------QGGDVKTKMIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                + +++  + + + + EP+IT SV+ QL +++ KLQ K+ +  A
Sbjct: 35  LS---------------AETDIRALAESIKATEPVITESVMEQLVETLQKLQAKVCDTNA 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +RY K+K L++HLLPLTNI FDK G RC                                
Sbjct: 80  KRYYKYKTLQTHLLPLTNIAFDKLGKRC-------------------------------- 107

Query: 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                    LTGSYDRTCK+WDI SG E+ T  GH+NVVYAV+F+ P  DKI+TGSFD+T
Sbjct: 108 ---------LTGSYDRTCKVWDIDSGKELLTLEGHKNVVYAVSFNNPTSDKIVTGSFDRT 158

Query: 295 LKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
            ++W S    C+ T  GH  EV    FSP  +   + S+D T++IF   +G E+ TLK H
Sbjct: 159 ARIWCSRTGHCLMTMWGHDGEVVVAKFSPSHNKIATASLDMTSKIFQLATGDEVGTLKGH 218

Query: 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
           T  VI+L F++D N +ITGSFD ++ +WD++                + +   +L GH  
Sbjct: 219 TAEVIALYFNNDGNQIITGSFDGTVSIWDVR----------------TLRRTSVLIGHRS 262

Query: 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS 471
           E+SNC++NF  S+IASSS+D TAK+WD R   C  TL+ H+DEVLD+ FD +G KLATAS
Sbjct: 263 ELSNCIYNFDCSLIASSSMDKTAKVWDTRVNSCLATLRGHDDEVLDLTFDNNGKKLATAS 322

Query: 472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
           SD TA +W V  + E L    GH  EVSK        +G  L T+S D+T+KLW++    
Sbjct: 323 SDTTARVWDVVSSFEQLALMQGHREEVSK-----GGPNGRHLLTSSLDRTSKLWSLENN- 376

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
             +QT  GH+++V   +F   G  +++ S+D TC +W
Sbjct: 377 RCVQTLEGHTDDVFSCAFSYNGDTIITASKDNTCTIW 413

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023779|ref|XP_003695689.1| PREDICTED: outer row dynein assembly protein 16 homolog [Apis florea]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/517 (40%), Positives = 287/517 (55%), Gaps = 104/517 (20%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL++FLLRY+PPG+ LEY                          TQG DIK K IDLLD
Sbjct: 1   MKLMKFLLRYFPPGLALEY--------------------------TQGGDIKTKMIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                + +++  + + + + EP+IT SV+ QL +++ KLQ K+ +   
Sbjct: 35  LS---------------AETDIRALAESIKAAEPVITESVMEQLVETLQKLQAKVCDTNP 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +RY K+K L++HLLPLTNI FDK G RCL                               
Sbjct: 80  KRYYKYKTLQTHLLPLTNIAFDKLGKRCL------------------------------- 108

Query: 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                     TGSYDRTCK+WDI SG E+ T  GH+NVVY V+F+ P  DKI+TGSFDKT
Sbjct: 109 ----------TGSYDRTCKVWDIDSGTELLTLEGHKNVVYTVSFNNPISDKIVTGSFDKT 158

Query: 295 LKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
            K+W S    C  T RGH+AEV    FSP  +   + S+D T+RIF+  +G+E+  L+ H
Sbjct: 159 AKIWCSRTGHCTATMRGHNAEVVVAKFSPICTKIATGSLDMTSRIFDITTGEELGILRGH 218

Query: 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
           T  +I+L F++D N +ITGSFD ++ +WD +    TR              I +L GH  
Sbjct: 219 TAEIIALHFNNDGNQIITGSFDGTVSIWDTRIL--TR--------------ICVLIGHRS 262

Query: 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS 471
           E+SNC++NF  S+IASSS+D TAK+WD +   C  T + H+DEVLD+ F+ +G KLATAS
Sbjct: 263 ELSNCIYNFDCSLIASSSMDKTAKVWDTKMNSCLVTFRGHDDEVLDLTFNNNGKKLATAS 322

Query: 472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
           SD TA +W V    + L    GH  EVSKV    F  +   L T+S D+T+KLW++    
Sbjct: 323 SDTTARVWDVSTNFKQLALMKGHREEVSKV---CFSPNSQHLLTSSLDRTSKLWSLEKNG 379

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
             +QT  GH+++V   +F   G  +++ S+D TC +W
Sbjct: 380 CCIQTLDGHTDDVFSCAFSYNGDTIITASKDNTCTIW 416

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017105|gb|EGI57904.1| WD repeat-containing protein 69 [Acromyrmex echinatior]

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 204/517 (39%), Positives = 285/517 (55%), Gaps = 107/517 (20%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           M+LL+FLLRY+PPG+ LEY                          TQG DIK K IDLLD
Sbjct: 1   MRLLKFLLRYFPPGLALEY--------------------------TQGGDIKTKMIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                + ++V  + + + + EP+IT SV+ QL +++ KLQ K+ +   
Sbjct: 35  LS---------------AETDVRALAESIKAAEPIITESVMDQLVETLQKLQAKVCDTNT 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +RY K+K L++HLLP+ NI  DK G RC                                
Sbjct: 80  KRYYKYKTLQTHLLPVINIALDKLGKRC-------------------------------- 107

Query: 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                    LT SYDRTCK+WDI SG E+ T  GH+NVV AV+F+ P  DKI+TGSFDKT
Sbjct: 108 ---------LTASYDRTCKVWDIDSGKELFTLEGHKNVVCAVSFNNPTSDKIVTGSFDKT 158

Query: 295 LKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
            K+W S    C+ T  GH AEV    FSP Q    + S+D T++IF+  +GQE+ TL+ H
Sbjct: 159 AKVWCSRTGHCLATMWGHDAEVVVAKFSPTQCKLATGSIDATSKIFHIETGQELGTLRGH 218

Query: 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
           T  VI+L +++D N +I+GSFD ++ +WDI+                +    ++L GH +
Sbjct: 219 TEEVIALHYNNDGNQIISGSFDGTVNIWDIR----------------TFTRTNVLIGHRK 262

Query: 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS 471
           E+SNCL+NF  S+IASSS+D TAK+WDVR   C  TL  H+DEVLD+AFD +G +LATAS
Sbjct: 263 ELSNCLYNFDCSLIASSSIDKTAKVWDVRMNSCLATLLGHDDEVLDLAFDNNGKRLATAS 322

Query: 472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
           SD TA +W +    + L    GH  EVSK      + +G +L TAS D+T +LW+     
Sbjct: 323 SDTTAQVWDISSNFQQLALMKGHREEVSK-----GNPNGHQLLTASLDRTTRLWSADDG- 376

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
              Q   GH++++   +F  TG  +++ S+D TC +W
Sbjct: 377 SCFQQLKGHTDDIFACAFSYTGDTIITASKDNTCTIW 413

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110759973|ref|XP_394888.3| PREDICTED: WD repeat-containing protein 69-like [Apis mellifera]

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 202/516 (39%), Positives = 281/516 (54%), Gaps = 103/516 (19%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL++FLLRY+PPG+ LEY                          TQG DIK K IDLLD
Sbjct: 1   MKLMKFLLRYFPPGLALEY--------------------------TQGGDIKTKMIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                + +++  + + + + EP+IT SV+ QL +++ KLQ K+ +   
Sbjct: 35  LS---------------AETDIRALAESIKAAEPVITESVMEQLVETLQKLQAKVCDTNP 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +RY K+K L++HLLPLTNI FDK G RCLTGSYDRTCK+WDI SG E+ T  GH+NVVY 
Sbjct: 80  KRYYKYKTLQTHLLPLTNIAFDKLGKRCLTGSYDRTCKVWDIDSGTELLTLEGHKNVVYT 139

Query: 235 VAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
           V+F+ P     +TGS+D+T K+W  ++GH   T RGH   V    FS P   KI TGS D
Sbjct: 140 VSFNNPISDKIVTGSFDKTAKIWCSRTGHCTTTMRGHNAEVVVAKFS-PIYTKIATGSLD 198

Query: 293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT 352
            T +++     E +   RGH+AE+                                    
Sbjct: 199 MTSRIFDITTGEELGILRGHTAEI------------------------------------ 222

Query: 353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE 412
              I+L F++D N +ITGSFD ++ +WD +    TR              + +L GH  E
Sbjct: 223 ---IALHFNNDGNQIITGSFDGTVSIWDTRIL--TR--------------VCVLIGHRSE 263

Query: 413 ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS 472
           +SNC++NF  S+IASSS+D TAK+WD +   C  T + H+DEVLD+ FD +G KLATASS
Sbjct: 264 LSNCIYNFDCSLIASSSMDKTAKVWDTKMNSCLVTFRGHDDEVLDLTFDNNGKKLATASS 323

Query: 473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE 532
           D TA +W V    + L    GH  EVSKV    F  +   L T+S D+T+KLW++     
Sbjct: 324 DTTARVWDVSTNFKQLALMKGHREEVSKV---CFSPNSQHLLTSSLDRTSKLWSLENGC- 379

Query: 533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
            +QT  GH+++V   +F   G  +++ S+D TC +W
Sbjct: 380 CIQTLDGHTDDVFSCAFSYNGDTIITASKDNTCMIW 415

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403267256|ref|XP_003925760.1| PREDICTED: outer row dynein assembly protein 16 homolog [Saimiri boliviensis boliviensis]

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 295/560 (52%), Gaps = 103/560 (18%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL  FLLRYYPPGI LEY +                 SG         ++K K+IDLLD
Sbjct: 1   MKLKSFLLRYYPPGIMLEYEK-----------------SG---------ELKTKSIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                 S++VS + +++   EPLITAS   Q++  I +LQ+KL +   
Sbjct: 35  LG---------------PSTDVSALVEEIQQAEPLITASRTEQVKLLIQRLQEKLGQHSN 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
             +  FK+LK+H+LPLTN+  +K G+ C                                
Sbjct: 80  HTFYLFKVLKAHILPLTNVALNKSGS-CF------------------------------- 107

Query: 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                    +TGSYDRTCKLWD  SG E+ T  GH+NVVYA+AF+ PYGDKI TGSFDKT
Sbjct: 108 ---------ITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKT 158

Query: 295 LKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
            KLW+    +C  T+RGH AE   V+F+P  +   + SMD TA++++  +G+E+ TL  H
Sbjct: 159 CKLWSVETGQCYHTFRGHRAEIVCVSFNPQSTLVATGSMDTTAKLWDIQTGEEVFTLTGH 218

Query: 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
           +  +ISL F++  + +ITGSFD +++VWD                  + + ++ L GH  
Sbjct: 219 SAEIISLSFNTSGDRIITGSFDHTVIVWDT----------------GTGRKVYTLIGHCA 262

Query: 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS 471
           EIS+ +FN+  S+I + S+D T  LWD     C  TL  HEDE+LD  FDY+G  +ATAS
Sbjct: 263 EISSAVFNWDCSLILTGSMDKTCMLWDATNGKCMATLTGHEDEILDSCFDYTGKLIATAS 322

Query: 472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
           +D      +     +++ T   H   +   +      S +    A+            A+
Sbjct: 323 ADDRTTSMSSPLWPQMVATL--HVCHLPDHICPLHQASPNYDPRAACGPLRPFIRPPAAL 380

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591
           +         +E S +SF+P G  +L+GS D T R+W  ++G+C+QVL+ H D++FSC F
Sbjct: 381 QEGAPLSLVVSERSTISFNPQGNRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAF 440

Query: 592 NYNGDTIITASKDNTCCIWR 611
           NY G+ +IT SKDNTC IWR
Sbjct: 441 NYKGNIVITGSKDNTCRIWR 460

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195996275|ref|XP_002108006.1| hypothetical protein TRIADDRAFT_49686 [Trichoplax adhaerens] gi|190588782|gb|EDV28804.1| hypothetical protein TRIADDRAFT_49686 [Trichoplax adhaerens]

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 201/521 (38%), Positives = 287/521 (55%), Gaps = 112/521 (21%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           M+L RFLLRYYPPGI LEY                           Q   ++ K IDLLD
Sbjct: 1   MRLKRFLLRYYPPGIILEYE--------------------------QNCQLRTKCIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                  +++ ++ + V +KEPLIT S   Q+ + I KLQ KL     
Sbjct: 35  LK---------------PETDIDDLLEDVANKEPLITPSKYEQVRRLIAKLQYKLANKDT 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +++  FK+L++H+LPLTN                                          
Sbjct: 80  KKFYLFKVLRAHILPLTN------------------------------------------ 97

Query: 235 VAFSEP-YGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK 293
           VAF++P    +TGSYDRTCK+WD  SG E+ T  GH+NVVYAVAF+ PYGDKI TGSFDK
Sbjct: 98  VAFNKPGTSFITGSYDRTCKIWDTSSGEELYTLEGHRNVVYAVAFNNPYGDKIATGSFDK 157

Query: 294 TLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA 350
           T KLW +   +C  T++GH+AE+   +F+P  +   + SMD TA++++  SG E+ TL  
Sbjct: 158 TCKLWNANTGKCYHTFKGHTAEIVCLSFNPPSTIIATGSMDTTAKLWDLQSGTEVATLSG 217

Query: 351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410
           HT  +ISL F+S  N L+TGSFD ++ +WD           +E+  R     IH L GH 
Sbjct: 218 HTAEIISLAFNSTGNKLVTGSFDHTVSIWD-----------SETGRR-----IHTLIGHH 261

Query: 411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA 470
            EIS+  FN+ +S+I + S+D T KLWDV +  C +T   HEDEVLD++F+++G K ATA
Sbjct: 262 SEISSTQFNYDSSLIITGSMDKTCKLWDVNSGKCIHTFSGHEDEVLDVSFNFTGHKFATA 321

Query: 471 SSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW--TVG 528
           S+D T  ++        +    GH  E+SKV    F+  G+K+ TASSD+TA+LW    G
Sbjct: 322 SADGTCRVYDAYNH-NCITKLIGHEGEISKV---CFNPQGNKILTASSDKTARLWDPETG 377

Query: 529 GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569
             +++L+   GHS+E+   +F+  G ++++GS+D TCR+WS
Sbjct: 378 NCLQILE---GHSDEIFSCTFNYEGNMIITGSKDNTCRIWS 415

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|350408500|ref|XP_003488424.1| PREDICTED: WD repeat-containing protein 69-like [Bombus impatiens]

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 278/557 (49%), Gaps = 141/557 (25%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKLL+FLLRY+PPG+ LEY                          TQG D+K K IDLLD
Sbjct: 1   MKLLKFLLRYFPPGLALEY--------------------------TQGGDVKTKMIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                + +++  + + + + EP+IT SV+ QL +++ KLQ K+ E  A
Sbjct: 35  LS---------------AETDIRALAESIKATEPVITESVMEQLVETLQKLQAKVCETNA 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +RY K+K L++HLLPLTNI FDK G RC                                
Sbjct: 80  KRYYKYKTLQTHLLPLTNIAFDKLGKRC-------------------------------- 107

Query: 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                    LTGSYDRTCK+WDI SG E+ T  GH+NVVY V+F+ P  DKI+TGSFDK 
Sbjct: 108 ---------LTGSYDRTCKVWDIDSGAELLTLEGHKNVVYTVSFNNPISDKIVTGSFDK- 157

Query: 295 LKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354
                                                 TARI+ + +G    T+  H   
Sbjct: 158 --------------------------------------TARIWCSRTGHCFLTMWGHNAG 179

Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
           +   +FS   N + T S D++  ++++                 + + + +L GH+ EI 
Sbjct: 180 ITVAKFSPSYNKIGTASLDTTSKIFEL----------------TTGEELGMLRGHTAEII 223

Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
              FN   + + + S DGT  +WD RT      L  H  E+ +  +++  S +A++S D+
Sbjct: 224 ALHFNNDGTQMITGSFDGTVNIWDTRTFSRSSVLIGHRSELSNCVYNFDCSLIASSSMDK 283

Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
           TA +W        L T  GH +EV   LD+ FD +G KLATASSD TA++W V    + L
Sbjct: 284 TAKVWDTR-MNSCLATLRGHDDEV---LDLTFDNNGKKLATASSDTTARVWDVSTNFQQL 339

Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
            +  GH  EVSKV F P  + +L+ S D T +LWS ESG CIQ L  H DDVFSC F+YN
Sbjct: 340 ASMRGHREEVSKVCFSPNSQHLLTSSLDETSKLWSLESGCCIQTLDGHTDDVFSCAFSYN 399

Query: 595 GDTIITASKDNTCCIWR 611
           GDTIITASKDNTC IWR
Sbjct: 400 GDTIITASKDNTCMIWR 416

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340369248|ref|XP_003383160.1| PREDICTED: WD repeat-containing protein 69-like [Amphimedon queenslandica]

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/517 (38%), Positives = 274/517 (52%), Gaps = 105/517 (20%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKL RF LRYYPPG+ LEY                           Q  ++  + IDLLD
Sbjct: 1   MKLKRFFLRYYPPGVILEYE--------------------------QSGELHSRCIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L   S               +  ++   +   E L++ S   Q+   I KLQ+KL     
Sbjct: 35  LQPES---------------DARKLASDIIQNERLLSPSRTEQVVSLIQKLQQKLILSKE 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +R+  FK++K+H+LPLTN+  +K      +GSY                           
Sbjct: 80  KRFYLFKVIKAHMLPLTNLAMNK------SGSY--------------------------- 106

Query: 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                    +TGSYDRTCK+W+  SG E+ T  GH NVVY+VAF+ PYGDKI T SFDKT
Sbjct: 107 --------FITGSYDRTCKVWETASGEELLTLEGHGNVVYSVAFNNPYGDKIATSSFDKT 158

Query: 295 LKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
            KLW S   +C  T+RGH+ E   V F+P  +   S SMD TA++++  SG E  TL  H
Sbjct: 159 CKLWCSETGKCFHTFRGHTLEVVSVVFNPQSTLVASGSMDTTAKLWDVASGAEKATLAGH 218

Query: 352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
           +  VI+L F +  + ++TGSFD +++ WD+                 + K  + L GH  
Sbjct: 219 SAEVITLSFDTAGDSMVTGSFDHTVLGWDV----------------TTGKRKYGLIGHRA 262

Query: 412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS 471
           EISN L+NF +S+IA+SS+D T KLWD RT  C  TL++HEDEVLD+AFD +G  L T S
Sbjct: 263 EISNVLYNFDSSLIATSSMDSTCKLWDARTGQCTATLRDHEDEVLDLAFDSTGQYLLTGS 322

Query: 472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
           +D  A L+ V      L    GHS E++KV+   F+  G++L TASSD+TA+LW      
Sbjct: 323 ADSHAVLYDVRAMGSFLYKLSGHSGEINKVV---FNPQGTRLLTASSDKTARLWDSSNG- 378

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
             LQT  GHS E+   +F+  G ++++GS+D TCRLW
Sbjct: 379 NCLQTLEGHSEEIFSATFNYEGDIIVTGSKDNTCRLW 415

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|340719878|ref|XP_003398372.1| PREDICTED: WD repeat-containing protein 69-like [Bombus terrestris]

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 205/557 (36%), Positives = 277/557 (49%), Gaps = 141/557 (25%)

Query: 55  MKLLRFLLRYYPPGITLEYTQGKDIKMKTIDLLDLDAFSGITLEYTQGKDIKMKTIDLLD 114
           MKLL+FLLRY+PPG+ LEY                          TQG D+K K IDLLD
Sbjct: 1   MKLLKFLLRYFPPGLALEY--------------------------TQGGDVKTKMIDLLD 34

Query: 115 LDENSYCYLSFKTFLFFSSSNVSEITKQVYSKEPLITASVITQLEQSIMKLQKKLKEGFA 174
           L                + +++  + + + + EP+IT SV+ QL +++ KLQ K+ E  A
Sbjct: 35  LS---------------AETDIRALAESIKATEPVITESVMEQLVETLQKLQAKVCETNA 79

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           +RY K+K L++HLLPLTN+ FDK G RC                                
Sbjct: 80  KRYYKYKTLQTHLLPLTNVAFDKLGKRC-------------------------------- 107

Query: 235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                    LTGSYDRTCK+WDI SG E+ T  GH+NVVY V+F+ P  DKI+TGSFDK 
Sbjct: 108 ---------LTGSYDRTCKVWDIDSGAELLTLEGHKNVVYTVSFNNPISDKIVTGSFDK- 157

Query: 295 LKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354
                                                 TARI+ + +G    T+  H   
Sbjct: 158 --------------------------------------TARIWCSRTGHCFLTMWGHNAG 179

Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
           +   +FS   N + T S D++  ++++                 + + +  L GH+ EI 
Sbjct: 180 ITVAKFSPSYNKIGTASLDTTSKIFEL----------------TTGEELGTLRGHTAEII 223

Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
              FN   + + + S DGT  +WD RT      L  H  E+ +  +++  S +A++S D+
Sbjct: 224 ALHFNNDGAQMITGSFDGTVNIWDTRTFSRTSVLIGHRSELSNCVYNFDYSLIASSSMDK 283

Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
           TA +W        L T  GH +EV   LD+ FD +G KLATASSD TA++W V    + L
Sbjct: 284 TAKVWDTR-MNSCLATLRGHDDEV---LDLTFDNNGKKLATASSDTTARVWDVSTNFQQL 339

Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
            +  GH  EVSKV F P  + +L+ S D T +LWS ESG CIQ L  H DDVFSC F+YN
Sbjct: 340 ASMRGHREEVSKVCFSPNSQHLLTSSLDETSKLWSLESGCCIQTLDGHTDDVFSCAFSYN 399

Query: 595 GDTIITASKDNTCCIWR 611
           GDTIITASKDNTC IWR
Sbjct: 400 GDTIITASKDNTCMIWR 416

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	616
UNIPROTKB|Q0P593	415	WDR69 "Outer row dynein assemb	0.642	0.954	0.372	3.5e-86
RGD|1561436	415	LOC363267 "hypothetical protei	0.642	0.954	0.368	1.9e-85
UNIPROTKB|Q8N136	415	WDR69 "Outer row dynein assemb	0.642	0.954	0.370	6.4e-85
ZFIN|ZDB-GENE-050419-255	415	daw1 "dynein assembly factor w	0.641	0.951	0.369	2.8e-82
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.555	0.250	0.348	1.3e-41
DICTYBASE|DDB_G0288375	419	lis1 "lissencephaly-1 homolog	0.292	0.429	0.354	1.7e-22
POMBASE|SPCC16A11.02	777	utp13 "U3 snoRNP-associated pr	0.675	0.535	0.256	1.7e-34
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.464	0.853	0.283	5e-34
MGI|MGI:1916794	328	Wdr5b "WD repeat domain 5B" [M	0.465	0.875	0.289	6.5e-34
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.590	0.193	0.291	8.1e-34

UNIPROTKB|Q0P593 WDR69 "Outer row dynein assembly protein 16 homolog" [Bos taurus (taxid:9913)]

 Score = 759 (272.2 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
 Identities = 163/437 (37%), Positives = 252/437 (57%)

Query:    94 GITLEYTQGKDIKMKTIDLLDLDENSYCYXXXXXXXXXXXXNVSEITKQVYSKEPLITAS 153
             GI LEY +   +K K+IDLLDLD ++               +VS + +++   EPLITAS
Sbjct:    14 GIMLEYEKSGQLKTKSIDLLDLDPST---------------DVSALVEEIQKAEPLITAS 58

Query:   154 VITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKL 213
                Q++  I +LQ KL +    ++  FK+L++H+LPLTN+  +K G+  +TGSYDRTCKL
Sbjct:    59 RSDQVKLLIQRLQNKLGQHSNHKFYLFKVLRAHILPLTNVALNKSGSCFITGSYDRTCKL 118

Query:   214 WDIKSGHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQN 271
             WD  SG E+ T  GH+NVVYA+AF+ PYG    TGS+D+TCKLW +++G    T+RGH  
Sbjct:   119 WDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTA 178

Query:   272 VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSC 328
              +  ++F+ P    + TGS D T KLW     E + T  GHSAE+   +F+   +   + 
Sbjct:   179 EIVCLSFN-PQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITG 237

Query:   329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR 388
             S DHT  ++  ++G++++TL  H   + S  F+ D ++++TGS D +  +WD        
Sbjct:   238 SFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDA------- 290

Query:   389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
                       + K +  LTGH  EI +  F+++  +IA++S DGTA+++   T  C   L
Sbjct:   291 ---------VNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKL 341

Query:   449 KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY 508
             + HE E+  I+F+  G++L T SSD+TA +W      + LQ   GH++E+      AF+Y
Sbjct:   342 EGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTG-QCLQVLEGHTDEI---FSCAFNY 397

Query:   509 SGSKLATASSDQTAKLW 525
              G  + T S D T ++W
Sbjct:   398 KGDIIITGSKDNTCRIW 414

GO:0005929 "cilium" evidence=IEA

RGD|1561436 LOC363267 "hypothetical protein LOC363267" [Rattus norvegicus (taxid:10116)]

 Score = 755 (270.8 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
 Identities = 161/437 (36%), Positives = 253/437 (57%)

Query:    94 GITLEYTQGKDIKMKTIDLLDLDENSYCYXXXXXXXXXXXXNVSEITKQVYSKEPLITAS 153
             GI LEY +G ++K K+IDLL+L  ++               +V+ +  ++   EPLITAS
Sbjct:    14 GIMLEYEKGGELKTKSIDLLELSPST---------------DVNTLVGEIQKVEPLITAS 58

Query:   154 VITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKL 213
                Q+   + +LQ+KL++     +  FK+L++H+LPLTN+  +K G+  +TGSYDRTCK+
Sbjct:    59 RTKQVRLLVQRLQEKLRQHCDHNFYLFKVLRAHILPLTNVALNKAGSCFITGSYDRTCKV 118

Query:   214 WDIKSGHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQN 271
             WD  SG E+ T  GH+NVVYA+AF+ PYG    TGS+D+TCKLW  ++G    T+RGH  
Sbjct:   119 WDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSAETGKCYHTFRGHTA 178

Query:   272 VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSC 328
              +  ++F+ P    + TGS D T KLW     E + T  GH AE+   +F        + 
Sbjct:   179 EIVCLSFN-PQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRIITG 237

Query:   329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR 388
             S DHT  +++ ++G+++HTL  H   + S  FS D ++++TGS D + ++WD        
Sbjct:   238 SFDHTVVVWDASTGRKVHTLIGHCAEISSALFSWDCSLILTGSMDKTCMLWDA------- 290

Query:   389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
                       S K +  LTGH  EI +  F+++  +IA++S DGTA++++  T  C   L
Sbjct:   291 ---------TSGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCITKL 341

Query:   449 KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY 508
             + HE E+  I+F+  G++L T SSD+TA +W V    + LQ   GH++E+      AF+Y
Sbjct:   342 EGHEGEISKISFNPQGNRLLTGSSDKTARIWDVQTG-QCLQVLEGHTDEI---FSCAFNY 397

Query:   509 SGSKLATASSDQTAKLW 525
              G+ + T S D + ++W
Sbjct:   398 KGNIVITGSKDNSCRIW 414

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 754 (270.5 bits), Expect = 6.4e-85, Sum P(2) = 6.4e-85
 Identities = 162/437 (37%), Positives = 252/437 (57%)

Query:    94 GITLEYTQGKDIKMKTIDLLDLDENSYCYXXXXXXXXXXXXNVSEITKQVYSKEPLITAS 153
             GI LEY +  ++K K+IDLLDL  ++               +VS + +++   EPL+TAS
Sbjct:    14 GIMLEYEKHGELKTKSIDLLDLGPST---------------DVSALVEEIQKAEPLLTAS 58

Query:   154 VITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKL 213
                Q++  I +LQ+KL +     +  FK+LK+H+LPLTN+  +K G+  +TGSYDRTCKL
Sbjct:    59 RTEQVKLLIQRLQEKLGQNSNHTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKL 118

Query:   214 WDIKSGHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQN 271
             WD  SG E+ T  GH+NVVYA+AF+ PYG    TGS+D+TCKLW +++G    T+RGH  
Sbjct:   119 WDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTA 178

Query:   272 VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSC 328
              +  ++F+ P    + TGS D T KLW     E + T RGHSAE+   +F+       + 
Sbjct:   179 EIVCLSFN-PQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITG 237

Query:   329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR 388
             S DHT  +++ ++G++++ L  H   + S  F+ D ++++TGS D +  +WD        
Sbjct:   238 SFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDA------- 290

Query:   389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
                       + K +  LTGH  EI +  F+++  +IA++S DGTA+++   T  C   L
Sbjct:   291 ---------TNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKL 341

Query:   449 KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY 508
             + HE E+  I+F+  G+ L T SSD+TA +W      + LQ   GH++E+      AF+Y
Sbjct:   342 EGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTG-QCLQVLEGHTDEI---FSCAFNY 397

Query:   509 SGSKLATASSDQTAKLW 525
              G+ + T S D T ++W
Sbjct:   398 KGNIVITGSKDNTCRIW 414

GO:0005929 "cilium" evidence=IEA

ZFIN|ZDB-GENE-050419-255 daw1 "dynein assembly factor with WDR repeat domains 1" [Danio rerio (taxid:7955)]

 Score = 743 (266.6 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
 Identities = 162/438 (36%), Positives = 251/438 (57%)

Query:    94 GITLEYTQGKDIKMKTIDLLDLDENSYCYXXXXXXXXXXXXNVSEITKQVYSKEPLITAS 153
             GI L+Y +G  ++ K IDLL+L   +               +V E+  ++ + EPLIT+S
Sbjct:    14 GIFLDYEKGGQLRTKCIDLLNLTPET---------------DVEELVLEIRAAEPLITSS 58

Query:   154 VITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKL 213
              + Q++  I KLQ+K+ +   +++  F+ L++H+LPLTN+ F+K G+  +TGSYDRTCK+
Sbjct:    59 CVEQVKLLICKLQEKVGQKDERKFYLFRALQAHILPLTNVAFNKSGSCFITGSYDRTCKI 118

Query:   214 WDIKSGHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQN 271
             WD  SG E+ T  GH+NVVYA+AF+ PYG    TGS+D+TCKLW  ++G    T+RGH  
Sbjct:   119 WDTASGEELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTFRGHTA 178

Query:   272 VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSC 328
              +  +AF+ P    + TGS D T KLW     E + T  GH AE+    F+       + 
Sbjct:   179 EIVCLAFN-PQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTG 237

Query:   329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR 388
             S DHTA +++  SG+++H L  H G +  +QF+ D +++ T S D S  VWD        
Sbjct:   238 SFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWD-------- 289

Query:   389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
                AE       + +  L GH+ E+ +  FN++  +IA++S DGT++++   T  C   L
Sbjct:   290 ---AEGG-----QCLATLLGHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQL 341

Query:   449 KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVG-GAVELLQTFYGHSNEVSKVLDIAFD 507
             + H+ E+  + F+  GS++ TAS D+T+ +W V  GA   LQ   GHS+E+      AF+
Sbjct:   342 EGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTGAC--LQVLEGHSDEI---FSCAFN 396

Query:   508 YSGSKLATASSDQTAKLW 525
             Y G  + T S D T ++W
Sbjct:   397 YEGDTIITGSKDNTCRIW 414

GO:0003674 "molecular_function" evidence=ND

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0070286 "axonemal dynein complex assembly" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060285 "ciliary cell motility" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0005929 "cilium" evidence=IEA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 454 (164.9 bits), Expect = 1.3e-41, P = 1.3e-41
 Identities = 130/373 (34%), Positives = 181/373 (48%)

Query:   178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 237
             E  + L+ H   + ++ F   G +  + S D T KLW+  +G    T++GH   + AVAF
Sbjct:   951 ELLQTLEGHSQSVRSVAFSPDGKQLASSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVAF 1010

Query:   238 SEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 295
             S P G   ++GS D T KLWD+ +     +   H   V+AVAFS P   ++ + S D T+
Sbjct:  1011 S-PDGKHLVSGSDDNTIKLWDLATSELQQSLEDHSRSVHAVAFS-PDDKQLASSSLDSTI 1068

Query:   296 KLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT 352
             KLW SA  E  +T  GHS     VTFSPD     S S D T +++N  +G+   TL   +
Sbjct:  1069 KLWDSATGELQRTLEGHSQGVRSVTFSPDGKLLASNSYDGTIKLWNPLTGELQQTLTGRS 1128

Query:   353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE 412
               V S+ FS D   L +G +DS+I +WD                 A+ + +  L GHS  
Sbjct:  1129 DWVDSVAFSPDGKQLASGYYDSTIKLWD----------------SATGELLQTLEGHSDR 1172

Query:   413 ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS 472
             I + +F+    ++AS S D TAKLWD  T       + H   V  +AF   G  LA++S 
Sbjct:  1173 IQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFEGHSKWVESVAFSPDGKLLASSSY 1232

Query:   473 DQTANLWT-VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
              +T  LW  V G  ELLQT          V   AF   G++LA+     T K+W      
Sbjct:  1233 GETIKLWDPVTG--ELLQTLNDPDESAGSV---AFSPDGNRLASVDIFDT-KIWDPATG- 1285

Query:   532 ELLQTFYGHSNEV 544
             ELLQ   GHS  V
Sbjct:  1286 ELLQALKGHSKWV 1298

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0288375 lis1 "lissencephaly-1 homolog protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 283 (104.7 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 66/186 (35%), Positives = 99/186 (53%)

Query:   404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
             HILTGH   I++  F+ S S++ S+S D T K+WD  +     TLK H + V DI FD +
Sbjct:   100 HILTGHRNCINSVKFHPSFSLMVSASEDATIKVWDFESGEFERTLKGHTNAVQDIDFDKT 159

Query:   464 GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK 523
             G+ LA+ S+D T  LW      + ++T +GH + VS V    F  SG +L ++S D+T K
Sbjct:   160 GNLLASCSADLTIKLWDFQ-TYDCVKTLHGHDHNVSCV---RFTPSGDQLISSSRDKTIK 215

Query:   524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
             +W        ++T  GH + V K++    G  + S S D T + W+   GEC+   + H 
Sbjct:   216 VWEAATGY-CIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECLATYREHS 274

Query:   584 DDVFSC 589
               V  C
Sbjct:   275 H-VVEC 279

GO:0071539 "protein localization to centrosome" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IGI

GO:0051645 "Golgi localization" evidence=IMP

GO:0051642 "centrosome localization" evidence=IMP

GO:0045504 "dynein heavy chain binding" evidence=IPI

GO:0031592 "centrosomal corona" evidence=IDA

GO:0017048 "Rho GTPase binding" evidence=IPI

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051301 "cell division" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

POMBASE|SPCC16A11.02 utp13 "U3 snoRNP-associated protein Utp13 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 399 (145.5 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 117/456 (25%), Positives = 203/456 (44%)

Query:   179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS 238
             + K +K+H  P+  +T D   T   TG  +   K+WDI   +   ++RGH  V+ A+ F 
Sbjct:    95 RIKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDIAGAYVTHSFRGHGGVISALCFG 154

Query:   239 E---PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL 295
             +    +   +G+ D   +LWD+ S   +  + GH +V+  + F EP G  +L+GS DKT+
Sbjct:   155 KHQNTWVLASGADDSRVRLWDLNSSRSMAVFEGHSSVIRGLTF-EPTGSFLLSGSRDKTV 213

Query:   296 KLWASAKEECIQTYRG-HSAE----VTFSPDQSTFCSCSMDHTARIFNTNSGQEMH---- 346
             ++W   K   ++T    HS E    V   P++    +    +    ++  SG  +     
Sbjct:   214 QVWNIKKRSAVRTIPVFHSVEAIGWVNGQPEEKILYTAGEGNLILAWDWKSGSRLDPGVD 273

Query:   347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
             T  + T  +I +   S+  +L   S D S+++         R       +    K    L
Sbjct:   274 TTHSETNAIIQVVPFSENTLLSVHS-DLSLLL---------RKRVPGEGFITIKK----L 319

Query:   407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK 466
              G   E+ +C +   + +   S+ +    +    T   F  L+ H D VL +     G  
Sbjct:   320 NGSFDEVIDCAWIGDDHLAVCSNTEFIDVISTDGTQV-FGVLEGHTDIVLTLDSSEDGVW 378

Query:   467 LATASSDQTANLWTVG---GAVELLQTFYGHSNEVSKVLDIAFDYSG--SKLATASSDQT 521
             LAT + D T  LW +       + +  F GH+  V+ V     D +G  + LA++S D+T
Sbjct:   379 LATGAKDNTVRLWNLNIEDNVYKCIHVFTGHTASVTAVALGPLDVNGYPTFLASSSQDRT 438

Query:   522 AKLWTVGGAVE-------LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574
              K + +G  +         + T   H  +V+ +     G+++ S SQD T +LW + +GE
Sbjct:   439 LKRFNLGSQLNKSDFSNRAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGE 498

Query:   575 CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
              + VL+ H   V++C FN     + + S D T  IW
Sbjct:   499 VVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIW 534

GO:0005730 "nucleolus" evidence=IEA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISO

GO:0030490 "maturation of SSU-rRNA" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 374 (136.7 bits), Expect = 5.0e-34, P = 5.0e-34
 Identities = 88/310 (28%), Positives = 153/310 (49%)

Query:   265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
             T +GH   + +V FS P G  + + S DKT+K+W +   +  +T  GH    +++ +S D
Sbjct:    41 TLKGHLKSISSVKFS-PDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQD 99

Query:   322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
                 CS S D T +I++  SG+ + TLK H   V  + F+   N++++GSFD ++ +WD+
Sbjct:   100 SKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDV 159

Query:   382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
                    N   E T         +++ HS  ++   FN   +++ S S DGT ++WD  T
Sbjct:   160 -------NT-GECT--------KMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTT 203

Query:   442 MCCFYTLKNHED-EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
                  T+   +  EV  + F  +G  +   + D T  LW+     + L+T+ GH NE   
Sbjct:   204 GQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTYTGHKNEKYC 263

Query:   501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS 560
             +        G  + T S D    ++ +    E++QT  GH + V  V+ HPT  ++ SG+
Sbjct:   264 IFSTFSVTCGKWIVTGSEDNLIYIYNLQTR-EIVQTLAGHEDVVLTVACHPTENIIASGA 322

Query:   561 --QDTTCRLW 568
               +D + ++W
Sbjct:   323 LEKDRSVKIW 332

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)]

 Score = 373 (136.4 bits), Expect = 6.5e-34, P = 6.5e-34
 Identities = 91/314 (28%), Positives = 156/314 (49%)

Query:   265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPD 321
             T  GH   + +V FS P G+ + + + D  + +W +    C +T  GHS E++   +S D
Sbjct:    34 TLAGHSAAISSVKFS-PNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSD 92

Query:   322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
              S   S S D T ++++  SG+ + TLK H+  V    F+   N++++GSFD S+ +W++
Sbjct:    93 SSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEV 152

Query:   382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
             +                + K +  L+ HS  IS   FN + S+I S S DG  ++WD  +
Sbjct:   153 K----------------TGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAAS 196

Query:   442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
               C  TL +  +  +  + F  +G  + TA+ D T  LW        L+T+ GH NE   
Sbjct:   197 GQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRG-RCLKTYTGHKNE-KY 254

Query:   501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
              L  +F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct:   255 CLFASFSVTGRKWVVSGSEDNMVYIWNLQ-TKEIVQRLQGHTDVVISAACHPTKNIIASA 313

Query:   560 S--QDTTCRLWSTE 571
             +   D T ++WS++
Sbjct:   314 ALENDKTIKVWSSD 327

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 407 (148.3 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
 Identities = 115/394 (29%), Positives = 182/394 (46%)

Query:   184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC 243
             K H   + +++F        + S D T K+WD  +     T  GH   V +V FS     
Sbjct:   260 KGHDRAVGSVSFSHDSRLLASASGDGTVKIWDTATSFLQNTLEGHNEWVKSVVFSHDSRL 319

Query:   244 L-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 302
             L + S D T K+WD  +G      +GH + V +V FS      I +GS D+T+++W +  
Sbjct:   320 LASASDDGTVKIWDTATGTLQRMLKGHNDSVRSVVFSHD-SRLIASGSNDRTVRIWETTT 378

Query:   303 EECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQ 359
                  T+  H   V   +F+ D     S S     +I++T +G   + L+ H   V S+ 
Sbjct:   379 GLLRHTFEDHEDSVMAVSFAHDSRRLASASDGGNVKIWDTRTGSLQNVLEGHDDCVNSVS 438

Query:   360 FSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFN 419
             FS D  +L + S D ++ +W         +A   S  R        L GH+  + + +F+
Sbjct:   439 FSPDSRLLASASDDRTVKIW---------HAATGSLQRT-------LEGHNDWVRSVVFS 482

Query:   420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
               + +IAS+S D T K+WD  T+     L++H++ V  + F +    LA+AS D T  +W
Sbjct:   483 HDSRLIASASDDMTVKIWDTATVPLQNNLESHDNWVRSVVFSHDSRLLASASDDMTVKIW 542

Query:   480 -TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG-GAVELLQTF 537
              T  G++E   T  GH + V+ V   +F      LA+AS D T K+W    G V+   TF
Sbjct:   543 DTATGSLE--NTLEGHDDRVNSV---SFSPDSRLLASASDDGTVKIWYAATGTVQ--HTF 595

Query:   538 YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE 571
              G       ++F  T  L+ S   D T ++W  E
Sbjct:   596 DGSGRVAISLAFSHTSNLLASAMDDGTVKIWDME 629

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6P2Y2	WDR69_XENTR	No assigned EC number	0.3634	0.6639	0.9855	yes	N/A
Q8N136	WDR69_HUMAN	No assigned EC number	0.3634	0.6639	0.9855	yes	N/A
Q1LV15	WDR69_DANRE	No assigned EC number	0.3487	0.6639	0.9855	yes	N/A
Q5BK30	WDR69_RAT	No assigned EC number	0.3613	0.6639	0.9855	yes	N/A
Q0P593	WDR69_BOVIN	No assigned EC number	0.3697	0.6639	0.9855	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	616
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-74
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-73
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-70
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-63
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-61
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-51
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-49
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-25
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	4e-12
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	5e-10
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	9e-09
smart00320	40	smart00320, WD40, WD40 repeats	1e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	4e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	8e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-07
smart00320	40	smart00320, WD40, WD40 repeats	1e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	9e-06
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	5e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	8e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	1e-04
smart00320	40	smart00320, WD40, WD40 repeats	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  239 bits (611), Expect = 2e-74
 Identities = 111/310 (35%), Positives = 168/310 (54%), Gaps = 24/310 (7%)

Query: 305 CIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS 361
             +T +GH+  VT   FSPD     + S D T ++++  +G+ + TLK HTGPV  +  S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 362 SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS 421
           +D   L +GS D +I +WD++                + + +  LTGH+  +S+  F+  
Sbjct: 61  ADGTYLASGSSDKTIRLWDLE----------------TGECVRTLTGHTSYVSSVAFSPD 104

Query: 422 NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481
             +++SSS D T K+WDV T  C  TL+ H D V  +AF   G+ +A++S D T  LW +
Sbjct: 105 GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164

Query: 482 GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHS 541
               + + T  GH+ EV+ V   AF   G KL ++SSD T KLW +    + L T  GH 
Sbjct: 165 RTG-KCVATLTGHTGEVNSV---AFSPDGEKLLSSSSDGTIKLWDLSTG-KCLGTLRGHE 219

Query: 542 NEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
           N V+ V+F P G L+ SGS+D T R+W   +GEC+Q L  H + V S  ++ +G  + + 
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279

Query: 602 SKDNTCCIWR 611
           S D T  IW 
Sbjct: 280 SADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  237 bits (607), Expect = 1e-73
 Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 23/302 (7%)

Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
           LK H   +T + F   G    TGS D T K+WD+++G  + T +GH   V  VA S   G
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS-ADG 63

Query: 243 --CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS 300
               +GS D+T +LWD+++G  + T  GH + V +VAFS P G  + + S DKT+K+W  
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDV 122

Query: 301 AKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVIS 357
              +C+ T RGH+  V    FSPD +   S S D T ++++  +G+ + TL  HTG V S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 358 LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
           + FS D   L++ S D +I +WD+                 + K +  L GH   +++  
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLS----------------TGKCLGTLRGHENGVNSVA 226

Query: 418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN 477
           F+    ++AS S DGT ++WD+RT  C  TL  H + V  +A+   G +LA+ S+D T  
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286

Query: 478 LW 479
           +W
Sbjct: 287 IW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  228 bits (584), Expect = 2e-70
 Identities = 109/309 (35%), Positives = 164/309 (53%), Gaps = 25/309 (8%)

Query: 221 EICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS 279
              T +GH   V  VAFS       TGS D T K+WD+++G  + T +GH   V  VA S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 280 EPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARI 336
              G  + +GS DKT++LW     EC++T  GH++ V+   FSPD     S S D T ++
Sbjct: 61  -ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
           ++  +G+ + TL+ HT  V S+ FS D   + + S D +I +WD+               
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL--------------- 164

Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
             + K +  LTGH+ E+++  F+     + SSS DGT KLWD+ T  C  TL+ HE+ V 
Sbjct: 165 -RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN 223

Query: 457 DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA 516
            +AF   G  LA+ S D T  +W +    E +QT  GH+N V+    +A+   G +LA+ 
Sbjct: 224 SVAFSPDGYLLASGSEDGTIRVWDL-RTGECVQTLSGHTNSVT---SLAWSPDGKRLASG 279

Query: 517 SSDQTAKLW 525
           S+D T ++W
Sbjct: 280 SADGTIRIW 288

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  210 bits (537), Expect = 2e-63
 Identities = 89/260 (34%), Positives = 144/260 (55%), Gaps = 21/260 (8%)

Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
           LK H  P+ ++     GT   +GS D+T +LWD+++G  + T  GH + V +VAFS    
Sbjct: 47  LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106

Query: 243 CLTGS-YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA 301
            L+ S  D+T K+WD+++G  + T RGH + V +VAFS P G  + + S D T+KLW   
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS-PDGTFVASSSQDGTIKLWDLR 165

Query: 302 KEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
             +C+ T  GH+ EV    FSPD     S S D T ++++ ++G+ + TL+ H   V S+
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225

Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
            FS D  +L +GS D +I VWD++                + + +  L+GH+  +++  +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLR----------------TGECVQTLSGHTNSVTSLAW 269

Query: 419 NFSNSMIASSSLDGTAKLWD 438
           +     +AS S DGT ++WD
Sbjct: 270 SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  203 bits (519), Expect = 7e-61
 Identities = 90/273 (32%), Positives = 140/273 (51%), Gaps = 21/273 (7%)

Query: 344 EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
              TLK HTG V  + FS D  +L TGS D +I VWD++                  + +
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG----------------ELL 44

Query: 404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
             L GH+  + +   +   + +AS S D T +LWD+ T  C  TL  H   V  +AF   
Sbjct: 45  RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD 104

Query: 464 GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK 523
           G  L+++S D+T  +W V    + L T  GH++ V+ V   AF   G+ +A++S D T K
Sbjct: 105 GRILSSSSRDKTIKVWDVE-TGKCLTTLRGHTDWVNSV---AFSPDGTFVASSSQDGTIK 160

Query: 524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
           LW +    + + T  GH+ EV+ V+F P G+ +LS S D T +LW   +G+C+  L+ HE
Sbjct: 161 LWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE 219

Query: 584 DDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
           + V S  F+ +G  + + S+D T  +W     +
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  183 bits (465), Expect = 2e-51
 Identities = 145/446 (32%), Positives = 219/446 (49%), Gaps = 39/446 (8%)

Query: 150 ITASVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDR 209
           ++   +   E  I+ L        +       +L+ H   +T+I F   G   L+GS D 
Sbjct: 28  LSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87

Query: 210 TCKLWDIKSG-HEICTYRG-HQNVVYAVAFSEPYG----CLTGSYDRTCKLWDIKS-GHE 262
           T KLWD+ +G   I +  G H + V  +A S P G      + S D T KLWD+ + G  
Sbjct: 88  TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147

Query: 263 ICTYRGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAKEECIQTYRGHSAEVT---F 318
           I T  GH   V ++AFS P G  + +GS  D T+KLW     + + T  GH+  V+   F
Sbjct: 148 IRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206

Query: 319 SPD-QSTFCSCSMDHTARIFNTNSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
           SPD      S S D T R+++ ++G+ +  TL  H+  V+S  FS D ++L +GS D +I
Sbjct: 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTI 265

Query: 377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKL 436
            +WD+               R+S   +  L+GHS  + +  F+    ++AS S DGT +L
Sbjct: 266 RLWDL---------------RSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310

Query: 437 WDVRTMCCFY--TLKNHEDEVLDIAFDYSGSKLATA-SSDQTANLWTVGGAVELLQTFYG 493
           WD+ T       TLK HE  V  ++F   GS L +  S D T  LW +    + L+T  G
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLR-TGKPLKTLEG 369

Query: 494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG 553
           HSN    VL ++F   G  +++ S+D T +LW +     LL+   GH++ V+ + F P G
Sbjct: 370 HSN----VLSVSFSPDGRVVSSGSTDGTVRLWDLS-TGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 554 KLVLSGSQDTTCRLWSTESGECIQVL 579
           K + SGS D T RLW  ++       
Sbjct: 425 KSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  177 bits (450), Expect = 3e-49
 Identities = 148/447 (33%), Positives = 214/447 (47%), Gaps = 39/447 (8%)

Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 237
           +       + L L ++   + G   L    D    L D+ S       RGH++ + ++AF
Sbjct: 18  KSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGHEDSITSIAF 73

Query: 238 SEP-YGCLTGSYDRTCKLWDIKSG-HEICTYRG-HQNVVYAVAFSEPYGDKILT--GSFD 292
           S      L+GS D T KLWD+ +G   I +  G H + V  +A S P G+ IL    S D
Sbjct: 74  SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD 133

Query: 293 KTLKLWASAKE-ECIQTYRGHSAEVT---FSPDQSTFCSCS-MDHTARIFNTNSGQEMHT 347
            T+KLW  +   + I+T  GHS  VT   FSPD     S S +D T ++++  +G+ + T
Sbjct: 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 348 LKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
           L  HT PV SL FS D   ++ +GS D +I +WD+                        L
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL---------------STGKLLRSTL 238

Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-CCFYTLKNHEDEVLDIAFDYSGS 465
           +GHS  + +  F+   S++AS S DGT +LWD+R+      TL  H   VL +AF   G 
Sbjct: 239 SGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297

Query: 466 KLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA-SSDQTAK 523
            LA+ SSD T  LW +  G +    T  GH   VS    ++F   GS L +  S D T +
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS---SLSFSPDGSLLVSGGSDDGTIR 354

Query: 524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
           LW +     L        + V  VSF P G++V SGS D T RLW   +G  ++ L  H 
Sbjct: 355 LWDLRTGKPLKT--LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 584 DDVFSCGFNYNGDTIITASKDNTCCIW 610
             V S  F+ +G ++ + S DNT  +W
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  120 bits (301), Expect = 4e-29
 Identities = 89/299 (29%), Positives = 133/299 (44%), Gaps = 20/299 (6%)

Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            S      +   +    +        L+ H   + S+ FS D  +L++GS D +I +WD+
Sbjct: 35  SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDL 94

Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
                   +       +  K           ++    + ++ ++ASSSLDGT KLWD+ T
Sbjct: 95  DNGEKLIKSLEGLHDSSVSK-----------LALSSPDGNSILLASSSLDGTVKLWDLST 143

Query: 442 -MCCFYTLKNHEDEVLDIAFDYSGSKLATASS-DQTANLWTVGGAVELLQTFYGHSNEVS 499
                 TL+ H + V  +AF   G  LA+ SS D T  LW +    + L T  GH++ VS
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-KPLSTLAGHTDPVS 202

Query: 500 KVLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
               +AF   G   +A+ SSD T +LW +     L  T  GHS+ V   SF P G L+ S
Sbjct: 203 ---SLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLAS 258

Query: 559 GSQDTTCRLWSTESG-ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
           GS D T RLW   S    ++ L  H   V S  F+ +G  + + S D T  +W      
Sbjct: 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (267), Expect = 1e-25
 Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%)

Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 240
             L  H   + ++ F   G + L+ S D T KLWD+ +G  + T RGH+N V +VAFS  
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230

Query: 241 -YGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 299
            Y   +GS D T ++WD+++G  + T  GH N V ++A+S P G ++ +GS D T+++W 
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS-PDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 69.0 bits (168), Expect = 4e-12
 Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 12/176 (6%)

Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
           R  H P+  L   S+    C  ++  S +ASS+ +G  ++WDV        +K HE  V 
Sbjct: 520 RDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579

Query: 457 DIAFDYSGSK---LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF-DYSGSK 512
            I  DYS +    LA+ S D +  LW++   V +     G     + +  + F   SG  
Sbjct: 580 SI--DYSSADPTLLASGSDDGSVKLWSINQGVSI-----GTIKTKANICCVQFPSESGRS 632

Query: 513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
           LA  S+D     + +      L T  GHS  VS V F  +  LV S S D T +LW
Sbjct: 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLW 687

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 61.8 bits (150), Expect = 5e-10
 Identities = 39/116 (33%), Positives = 57/116 (49%), Gaps = 12/116 (10%)

Query: 501 VLDIAFD-YSGSKLATASSDQTAKLWTVGGAVELLQT--------FYGHSNEVSKVSFHP 551
           ++D+AF+ +   KL TAS D T   W +    E L            GH+ +V  VSFHP
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGI--PEEGLTQNISDPIVHLQGHTKKVGIVSFHP 135

Query: 552 TGKLVL-SGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
           +   VL S   D    +W  E G+ ++V+K H D + S  +N +G  + T SKD  
Sbjct: 136 SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK 191

Length = 493

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 57.6 bits (139), Expect = 9e-09
 Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 11/128 (8%)

Query: 353 GPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ 411
           GP+I + F+  D   L T S D +I+ W I           E   +    PI  L GH++
Sbjct: 76  GPIIDVAFNPFDPQKLFTASEDGTIMGWGIP---------EEGLTQNISDPIVHLQGHTK 126

Query: 412 EISNCLFNFS-NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA 470
           ++    F+ S  +++AS+  D    +WDV        +K H D++  + ++  GS L T 
Sbjct: 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186

Query: 471 SSDQTANL 478
           S D+  N+
Sbjct: 187 SKDKKLNI 194

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 21/40 (52%), Positives = 27/40 (67%)

Query: 341 SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
           SG+ + TLK HTGPV S+ FS D   L +GS D +I +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 342 GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
           G+ + TLK HTGPV S+ FS D N+L +GS D ++ VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569
           +LL+T  GH+  V+ V+F P G L+ SGS D T R+W 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 19/38 (50%), Positives = 25/38 (65%)

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569
           ELL+T  GH+  V+ V+F P GK + SGS D T +LW 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 572 SGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           SGE ++ LK H   V S  F+ +G  + + S D T  +W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 52.0 bits (124), Expect = 8e-07
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 22/160 (13%)

Query: 285 KILTGSFDKTLKLWASAKEECIQTYRGHSAEV----TFSPDQSTFCSCSMDHTARIFNTN 340
           ++ + +F+  +++W  A+ + +   + H   V      S D +   S S D + ++++ N
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606

Query: 341 SGQEMHTLKAHTGPVISLQFSSDRNM-LITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399
            G  + T+K     +  +QF S+    L  GS D  +  +D+               R  
Sbjct: 607 QGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDL---------------RNP 650

Query: 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV 439
             P+  + GHS+ +S   F  S++++ SSS D T KLWD+
Sbjct: 651 KLPLCTMIGHSKTVSYVRFVDSSTLV-SSSTDNTLKLWDL 689

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 573 GECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           G+ ++ LK H   V S  F+ +G+ + + S D T  +W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 9e-07
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 401 KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
           K +  L GH+  +++  F+   +++AS S DGT ++WD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 298
           SG  + T +GH   V +VAFS P G  + +GS D T+KLW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 399 SHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
           S + +  L GH+  +++  F+     +AS S DGT KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 9e-06
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 298
           G  + T +GH   V +VAFS P G+ + +GS D T+++W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFS-PDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 348 LKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
           LK HT  ++ LQF+     +L +GS D +I VW+I +         + + +    P  IL
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN--------DESVKEIKDPQCIL 121

Query: 407 TGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDV 439
            GH ++IS   +N  N  I  SS  D    +WD+
Sbjct: 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 18/39 (46%)

Query: 441 TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
           +     TLK H   V  +AF   G  LA+ S D T  LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 218 SGHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWD 256
           SG  + T +GH   V +VAFS P G    +GS D T KLWD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFS-PDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 304 ECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFN 338
           E ++T +GH+  VT   FSPD     S S D T ++++
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 442 MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
                TLK H   V  +AF   G+ LA+ S D T  +W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 303 EECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFN 338
            + ++T +GH+  VT   FSPD +   S S D T R+++
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           +LL+T  GH+  V+    +AF   G+ LA+ S D T ++W
Sbjct: 2   KLLRTLKGHTGPVT---SVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 60/279 (21%), Positives = 116/279 (41%), Gaps = 38/279 (13%)

Query: 173 FAQRYEKFKMLKSHLLPLTN----ITFDKFGTRCLTGSYDRTCKLWD----IKSGHEICT 224
           F++   K  + +  LL  +N    I FD+ G    T   ++  K+++    IK G +I  
Sbjct: 465 FSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI-- 522

Query: 225 YRGHQNVVYAVAFSEPYGCLTGSY----------DRTCKLWDIKSGHEICTYRGHQNVVY 274
              H  VV   + S+  G    SY          +   ++WD+     +   + H+  V+
Sbjct: 523 ---HYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW 579

Query: 275 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--AEVTFSPDQS-TFCSCSMD 331
           ++ +S      + +GS D ++KLW+  +   I T +  +    V F  +   +    S D
Sbjct: 580 SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD 639

Query: 332 HTARIFN-TNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390
           H    ++  N    + T+  H+  V  ++F  D + L++ S D+++ +WD+       N 
Sbjct: 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRF-VDSSTLVSSSTDNTLKLWDLSMSISGIN- 697

Query: 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS 429
                      P+H   GH+   +    + S+  IA+ S
Sbjct: 698 ---------ETPLHSFMGHTNVKNFVGLSVSDGYIATGS 727

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 219 GHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWD 256
           G  + T +GH   V +VAFS     L +GS D T ++WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 21/162 (12%)

Query: 452 EDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQT--------FYGHSNEVSKVL 502
           E  ++D+AF+ +   KL TAS D T   W +    E L            GH+    KV 
Sbjct: 75  EGPIIDVAFNPFDPQKLFTASEDGTIMGWGI--PEEGLTQNISDPIVHLQGHTK---KVG 129

Query: 503 DIAFDYSGSK-LATASSDQTAKLWTV--GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
            ++F  S    LA+A +D    +W V  G AVE+++    HS++++ + ++  G L+ + 
Sbjct: 130 IVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC---HSDQITSLEWNLDGSLLCTT 186

Query: 560 SQDTTCRLWSTESGECIQVLKAHED-DVFSCGFNYNGDTIIT 600
           S+D    +     G  +  ++AH       C +    D IIT
Sbjct: 187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           ELL+T  GH+  V+    +AF   G  LA+ S D T KLW
Sbjct: 3   ELLKTLKGHTGPVT---SVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 17/38 (44%), Positives = 21/38 (55%)

Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWD 215
           E  K LK H  P+T++ F   G    +GS D T KLWD
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWD 215
           LK H  P+T++ F   G    +GS D T ++WD
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	616
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		5e-65
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-37
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-33
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-30
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-22
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-33
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-30
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-22
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-33
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-30
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-22
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-33
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-30
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		4e-22
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-33
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-30
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		5e-22
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-33
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-30
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		5e-22
2h9l_A	329	Wdr5delta23 Length = 329		6e-33
2h9l_A	329	Wdr5delta23 Length = 329		3e-30
2h9l_A	329	Wdr5delta23 Length = 329		4e-22
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-33
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		4e-30
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		5e-22
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-06
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-33
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-30
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-22
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-33
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		4e-30
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-22
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		7e-33
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-30
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-22
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-33
2gnq_A	336	Structure Of Wdr5 Length = 336		4e-30
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-22
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-33
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-30
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-22
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-32
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-30
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		8e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-32
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-29
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		5e-22
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		9e-32
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-29
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		5e-22
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-31
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-29
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		8e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-30
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-28
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-28
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-23
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		3e-21
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		8e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-23
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		3e-21
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-22
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		6e-11
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-22
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		6e-11
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-22
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		6e-11
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-22
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-11
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-22
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		7e-11
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-22
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-16
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-10
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		6e-22
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		7e-22
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		7e-22
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-22
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-22
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-21
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		9e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-21
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		6e-21
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-12
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		8e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-20
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-19
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-20
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		8e-13
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		7e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-18
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		6e-18
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		7e-18
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-18
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		9e-11
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		4e-17
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-16
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-08
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-16
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-16
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-16
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-15
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		4e-16
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		3e-15
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-14
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		9e-12
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		3e-15
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-14
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		9e-12
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-15
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		3e-11
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-15
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-14
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		5e-11
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		7e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		9e-14
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-10
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		8e-13
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-04
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		9e-13
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-04
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-12
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		5e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-11
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		4e-09
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		7e-10
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		6e-09
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		4e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		7e-09
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		5e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		8e-09
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		4e-06
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-08
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-08
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-08
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		7e-08
3bg0_A	316	Architecture Of A Coat For The Nuclear Pore Membran		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		6e-07
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		7e-07
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		9e-07
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		9e-07
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		9e-07
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		9e-07
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		1e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		4e-05
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		1e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-06
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		1e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-04
3acp_A	417	Crystal Structure Of Yeast Rpn14, A Chaperone Of Th		4e-06
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		4e-06
4e54_B	435	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		8e-06
4e5z_B	436	Damaged Dna Induced Uv-Damaged Dna-Binding Protein		8e-06
3ei4_B	436	Structure Of The Hsddb1-Hsddb2 Complex Length = 436		9e-06
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		9e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		9e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		2e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		1e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		3e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-05
3mmy_A	368	Structural And Functional Analysis Of The Interacti		1e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		3e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-05
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-05
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		9e-05
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		2e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		4e-04
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		4e-04
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		4e-04
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  245 bits (626), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 158/436 (36%), Positives = 222/436 (50%), Gaps = 37/436 (8%)
Query: 180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 239
            + L  H   +  + F   G    + S D+T KLW+ ++G  + T  GH + V  VAFS 
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS- 230
Query: 240 PYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297
           P G    + S D+T KLW+ ++G  + T  GH + V  VAF  P G  I + S DKT+KL
Sbjct: 231 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKL 288
Query: 298 WASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354
           W +   + +QT  GHS+ V    FSPD  T  S S D T +++N N GQ + TL  H+  
Sbjct: 289 W-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSS 346
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
           V  + FS D   + + S D ++ +W+   Q                  +  LTGHS  + 
Sbjct: 347 VWGVAFSPDGQTIASASDDKTVKLWNRNGQL-----------------LQTLTGHSSSVR 389
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
              F+     IAS+S D T KLW+ R      TL  H   V  +AF      +A+AS D+
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
           T  LW   G  +LLQT  GHS   S V  +AF   G  +A+AS D+T KLW   G  +LL
Sbjct: 449 TVKLWNRNG--QLLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLL 501
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN 594
           QT  GHS+ V  V+F P G+ + S S D T +LW+  +G+ +Q L  H   V+   F+ +
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 560
Query: 595 GDTIITASKDNTCCIW 610
           G TI +AS D T  +W
Sbjct: 561 GQTIASASSDKTVKLW 576

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/268 (35%), Positives = 135/268 (50%), Gaps = 26/268 (9%)
Query: 343 QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP 402
           +E + L+AH+  V  + FS D   + + S D ++ +W+   Q                  
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----------------- 49
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
           +  LTGHS  +    F+     IAS+S D T KLW+ R      TL  H   V  +AF  
Sbjct: 50  LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
            G  +A+AS D+T  LW   G  +LLQT  GHS   S V  +AF   G  +A+AS D+T 
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHS---SSVWGVAFSPDGQTIASASDDKTV 163
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
           KLW   G  +LLQT  GHS+ V  V+F P G+ + S S D T +LW+  +G+ +Q L  H
Sbjct: 164 KLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 220
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
              V    F+ +G TI +AS D T  +W
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLW 248

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 14  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 133 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 235
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 236 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 293
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 294 ALENDKTIKLWKSD 307

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 74  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 117
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 118 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 178 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 233
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 234 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 293
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 294 ALENDKTIKLWKS 306

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 13  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 67
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 68  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 17  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 136 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 238
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 239 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 296
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 297 ALENDKTIKLWKSD 310

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 77  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 120
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 121 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 181 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 236
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 237 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 296
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 297 ALENDKTIKLWKS 309

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 16  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 70
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 71  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  139 bits (349), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 18  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 137 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 239
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 240 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 298 ALENDKTIKLWKSD 311

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 78  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 182 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 298 ALENDKTIKLWKS 310

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 71
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 24  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 143 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 245
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 246 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 304 ALENDKTIKLWKSD 317

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 84  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 188 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 304 ALENDKTIKLWKS 316

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 77
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 18  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 137 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 239
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 240 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 298 ALENDKTIKLWKSD 311

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 78  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 121
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 122 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 182 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 237
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 298 ALENDKTIKLWKS 310

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 17  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 71
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 72  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 19  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 138 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 240
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 241 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 299 ALENDKTIKLWKSD 312

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 79  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 122
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 123 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 183 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 238
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 239 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 298
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 299 ALENDKTIKLWKS 311

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 18  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 72
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 73  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 35  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 154 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 256
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 257 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 314
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 315 ALENDKTIKLWKSD 328

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 95  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 138
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 139 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 199 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 254
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 255 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 314
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 315 ALENDKTIKLWKS 327

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 34  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 88
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 89  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  139 bits (349), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 24  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 143 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 245
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 246 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 304 ALENDKTIKLWKSD 317

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 84  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 188 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 304 ALENDKTIKLWKS 316

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 77
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 52/139 (37%), Gaps = 42/139 (30%)
Query: 514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK------------------- 554
           A  SS   +K   V     L  T  GH+  VS V F P G+                   
Sbjct: 2   AMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 555 -----------------------LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591
                                  L++S S D T ++W   SG+C++ LK H + VF C F
Sbjct: 62  KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 121
Query: 592 NYNGDTIITASKDNTCCIW 610
           N   + I++ S D +  IW
Sbjct: 122 NPQSNLIVSGSFDESVRIW 140

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 23  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 142 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 244
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 245 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 303 ALENDKTIKLWKSD 316

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 83  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 126
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 127 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 187 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 242
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 243 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 302
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 303 ALENDKTIKLWKS 315

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 22  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 76
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 77  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  138 bits (348), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 24  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 143 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 245
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 246 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 304 ALENDKTIKLWKSD 317

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 84  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 127
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 128 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 188 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 243
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 244 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 303
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 304 ALENDKTIKLWKS 316

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 23  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 77
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 78  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  138 bits (348), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 40  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 99  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 159 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 261
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 262 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 319
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 320 ALENDKTIKLWKSD 333

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 100 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 143
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 144 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 204 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 259
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 260 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 319
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 320 ALENDKTIKLWKS 332

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 39  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 93
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 94  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  138 bits (348), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 42  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 161 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 263
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 264 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 321
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 322 ALENDKTIKLWKSD 335

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 102 NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 145
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 146 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 206 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 261
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 262 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 321
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 322 ALENDKTIKLWKS 334

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 41  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 95
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 96  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  138 bits (348), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ +   S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 21  TLAGHTKAVSSVKFS-PNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 140 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 301 ALENDKTIKLWKSD 314

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     + S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 81  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 301 ALENDKTIKLWKS 313

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA +S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 74
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 154/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 21  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +     +                 L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 140 KTGMCLKT----------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 301 ALENDKTIKLWKSD 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 151/313 (48%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 81  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 301 ALENDKTIKLWKS 313

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 42/137 (30%)
Query: 516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK--------------------- 554
           +SS   +K   V     L+ T  GH+  VS V F P G+                     
Sbjct: 1   SSSATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 555 ---------------------LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY 593
                                L++S S D T ++W   SG+C++ LK H + VF C FN 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 594 NGDTIITASKDNTCCIW 610
             + I++ S D +  IW
Sbjct: 121 QSNLIVSGSFDESVRIW 137

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  135 bits (340), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 21  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 140 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
           +   D T +L+ ++
Sbjct: 301 ALENDKTIKLYKSD 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 26/304 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 81  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 SKDN 605
           + +N
Sbjct: 301 ALEN 304

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 74
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 21  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +                + K +  L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 140 K----------------TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D T  LW      + L+T+ GH NE   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNLVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
           +   D T +L+ ++
Sbjct: 301 ALENDKTIKLFKSD 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 26/304 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 81  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D T KLW      + L+T+ GH NE 
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 SKDN 605
           + +N
Sbjct: 301 ALEN 304

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 93/166 (56%), Gaps = 7/166 (4%)
Query: 446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDI 504
           +TL  H   V  + F  +G  LA++S+D+   +W    G  E  +T  GH   +S   D+
Sbjct: 20  FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGIS---DV 74
Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
           A+    + L +AS D+T K+W V    + L+T  GHSN V   +F+P   L++SGS D +
Sbjct: 75  AWSSDSNLLVSASDDKTLKIWDVSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
            R+W  ++G+C++ L AH D V +  FN +G  I+++S D  C IW
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  134 bits (338), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 153/314 (48%), Gaps = 27/314 (8%)
Query: 265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPD 321
           T  GH   V +V FS P G+ + + S DK +K+W +   +  +T  GH    ++V +S D
Sbjct: 21  TLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI 381
            +   S S D T +I++ +SG+ + TLK H+  V    F+   N++++GSFD S+ +WD+
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT 441
           +     +                 L  HS  +S   FN   S+I SSS DG  ++WD  +
Sbjct: 140 KTGMCLKT----------------LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 442 MCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
             C  TL + ++  +  + F  +G  +  A+ D    LW      + L+T+ GH NE   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTYTGHKNEKYC 242
Query: 501 VLDIAFDYSGSK-LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
           +    F  +G K + + S D    +W +    E++Q   GH++ V   + HPT  ++ S 
Sbjct: 243 IF-ANFSVTGGKWIVSGSEDNMVYIWNL-QTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 560 S--QDTTCRLWSTE 571
           +   D T +LW ++
Sbjct: 301 ALENDKTIKLWKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 150/313 (47%), Gaps = 28/313 (8%)
Query: 308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR 364
           T  GH+   + V FSP+     S S D   +I+    G+   T+  H   +  + +SSD 
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
           N+L++ S D ++ +WD+                +S K +  L GHS  +  C FN  +++
Sbjct: 81  NLLVSASDDKTLKIWDV----------------SSGKCLKTLKGHSNYVFCCNFNPQSNL 124
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
           I S S D + ++WDV+T  C  TL  H D V  + F+  GS + ++S D    +W     
Sbjct: 125 IVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV 544
            + L+T     N    V  + F  +G  +  A+ D   KLW      + L+T+ GH NE 
Sbjct: 185 -QCLKTLIDDDNP--PVSFVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTYTGHKNEK 240
Query: 545 SKV--SFHPT-GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
             +  +F  T GK ++SGS+D    +W+ ++ E +Q L+ H D V S   +   + I +A
Sbjct: 241 YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Query: 602 S--KDNTCCIWRS 612
           +   D T  +W+S
Sbjct: 301 ALENDKTIKLWKS 313

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 42/137 (30%)
Query: 516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK--------------------- 554
           +SS   +K   V     L+ T  GH+  VS V F P G+                     
Sbjct: 1   SSSATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 555 ---------------------LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY 593
                                L++S S D T ++W   SG+C++ LK H + VF C FN 
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 594 NGDTIITASKDNTCCIW 610
             + I++ S D +  IW
Sbjct: 121 QSNLIVSGSFDESVRIW 137

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 141/319 (44%), Gaps = 36/319 (11%)
Query: 311 GHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML 367
           GH + VT   F P  S   S S D T ++++  +G    TLK HT  V  + F     +L
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 368 ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427
            + S D +I +WD Q                  + I  + GH   +S+     +   I S
Sbjct: 166 ASCSADMTIKLWDFQ----------------GFECIRTMHGHDHNVSSVSIMPNGDHIVS 209
Query: 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG---- 483
           +S D T K+W+V+T  C  T   H + V  +  +  G+ +A+ S+DQT  +W V      
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 484 --------AVELL----QTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV 531
                    VE +    ++ Y   +E +          G  L + S D+T K+W V   +
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329
Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591
             L T  GH N V  V FH  GK +LS + D T R+W  ++  C++ L AHE  V S  F
Sbjct: 330 -CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Query: 592 NYNGDTIITASKDNTCCIW 610
           +     ++T S D T  +W
Sbjct: 389 HKTAPYVVTGSVDQTVKVW 407

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 30/285 (10%)
Query: 199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIK 258
           G R ++GS D T K+W   +G  + T  GH   V++    +    ++GS DRT K+W+ +
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI-IISGSTDRTLKVWNAE 187
Query: 259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT- 317
           +G  I T  GH + V  +   E    ++++GS D TL++W     +C+    GH A V  
Sbjct: 188 TGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 244
Query: 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
              D     S + D   ++++  +   +HTL+ HT  V SLQF  D   +++GS D+SI 
Sbjct: 245 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR 302
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW 437
           VWD++    T N             IH LTGH    S       ++++ S + D T K+W
Sbjct: 303 VWDVE----TGNC------------IHTLTGHQSLTSG--MELKDNILVSGNADSTVKIW 344
Query: 438 DVRTMCCFYTLK---NHEDEVLDIAFDYSGSKLATASSDQTANLW 479
           D++T  C  TL+    H+  V  + F+   + + T+S D T  LW
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score =  105 bits (261), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 172/401 (42%), Gaps = 63/401 (15%)
Query: 232 VYAVAFSEPYGCLTGSYDRTCKLWDIKSG-----HEICTYRG--------HQNVVYAVAF 278
           +Y ++F EP   L  +  +TC+ W I +       E C   G         + V+     
Sbjct: 28  LYVLSFLEPKDLLQAA--QTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFI 85
Query: 279 SEPYGDK-ILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC-----SCSMDH 332
             P+    I     D     W   + +  +  +GH   V        FC     S S D+
Sbjct: 86  HSPWKSAYIRQHRIDTN---WRRGELKSPKVLKGHDDHVITCLQ---FCGNRIVSGSDDN 139
Query: 333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA 392
           T ++++  +G+ + TL  HTG V S Q     N++I+GS D ++ VW+ +          
Sbjct: 140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAE---------- 187
Query: 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE 452
                 + + IH L GH+  +  C+ +     + S S D T ++WD+ T  C + L  H 
Sbjct: 188 ------TGECIHTLYGHTSTV-RCM-HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 239
Query: 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSK 512
             V  + +D  G ++ + + D    +W        L T  GH+N V      +  + G  
Sbjct: 240 AAVRCVQYD--GRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRV-----YSLQFDGIH 291
Query: 513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES 572
           + + S D + ++W V      + T  GH +  S +       +++SG+ D+T ++W  ++
Sbjct: 292 VVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKT 348
Query: 573 GECIQVLKA---HEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           G+C+Q L+    H+  V    FN N   +IT+S D T  +W
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLW 387

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 200/480 (41%), Gaps = 70/480 (14%)
Query: 182  MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 241
            +++ H   + +  F + G R  +   D+T +++  ++G ++   + H++ V   AFS   
Sbjct: 610  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 242  GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWA 299
              + T S D+  K+WD  +G  + TY  H   V    F+      +L TGS D  LKLW 
Sbjct: 670  SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 300  SAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHT-------LK 349
              ++EC  T  GH+  V    FSPD     SCS D T R+++  S  E  +       L 
Sbjct: 730  LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 789
Query: 350  AHTGP------VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
            +   P      V    +S+D + +I  +  + ++++DI     T    AE          
Sbjct: 790  SEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIH----TSGLLAE---------- 834
Query: 404  HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
             I TGH   I  C F+  + +   +      +LW++ +       + H   V  + F   
Sbjct: 835  -IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 893
Query: 464  GSKLATASSDQTANLWTV-----GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518
            GS   TAS DQT  +W         A+ L Q       E   ++    +  G +L    +
Sbjct: 894  GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 953
Query: 519  DQTAKLWTV-------------------GGAVELLQ--------TFYGHSNEVSKVSFHP 551
             Q   L                       GA+++++        +  GH   V  + F  
Sbjct: 954  GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013
Query: 552  TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT-IITASKDNTCCIW 610
             GK ++S S+D+  ++W+ ++G+ +  L+AH++ V    F    D+ +++ S D T  +W
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVW 1070

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 136/306 (44%), Gaps = 28/306 (9%)
Query: 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
           FS D     SC  D T ++F   +G+++  +KAH   V+   FSSD + + T S D  + 
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF-NFSNS-MIASSSLDGTAK 435
           +WD                 A+ K +H    HS++++ C F N SN  ++A+ S D   K
Sbjct: 683 IWD----------------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 436 LWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL----LQTF 491
           LWD+    C  T+  H + V    F      LA+ S+D T  LW V  A E     ++ F
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Query: 492 YGHSNEVSKVLDI-----AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
           +  S +  + +++     ++   G K+  A+ ++   L+ +  +  L +   GH + +  
Sbjct: 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQY 845
Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
             F P   L +         LW+ +S   +   + H   V    F+ +G + +TAS D T
Sbjct: 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 607 CCIWRS 612
             +W +
Sbjct: 906 IRVWET 911

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 508 YSGSKLATASSDQTAKL---WTVGGAVELLQTFY--GHSNEVSKVSFHPTGKLVLSGSQD 562
           Y  +KL       T +L   W     ++ L       H++ V    F   G+ + S   D
Sbjct: 577 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 636
Query: 563 TTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
            T +++  E+GE +  +KAHED+V  C F+ +   I T S D    IW S
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 200/480 (41%), Gaps = 70/480 (14%)
Query: 182  MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY 241
            +++ H   + +  F + G R  +   D+T +++  ++G ++   + H++ V   AFS   
Sbjct: 617  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 242  GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWA 299
              + T S D+  K+WD  +G  + TY  H   V    F+      +L TGS D  LKLW 
Sbjct: 677  SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 300  SAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHT-------LK 349
              ++EC  T  GH+  V    FSPD     SCS D T R+++  S  E  +       L 
Sbjct: 737  LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLS 796
Query: 350  AHTGP------VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI 403
            +   P      V    +S+D + +I  +  + ++++DI     T    AE          
Sbjct: 797  SEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIH----TSGLLAE---------- 841
Query: 404  HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS 463
             I TGH   I  C F+  + +   +      +LW++ +       + H   V  + F   
Sbjct: 842  -IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 900
Query: 464  GSKLATASSDQTANLWTV-----GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518
            GS   TAS DQT  +W         A+ L Q       E   ++    +  G +L    +
Sbjct: 901  GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKT 960
Query: 519  DQTAKLWTV-------------------GGAVELLQ--------TFYGHSNEVSKVSFHP 551
             Q   L                       GA+++++        +  GH   V  + F  
Sbjct: 961  GQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1020
Query: 552  TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT-IITASKDNTCCIW 610
             GK ++S S+D+  ++W+ ++G+ +  L+AH++ V    F    D+ +++ S D T  +W
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKD--FRLLQDSRLLSWSFDGTVKVW 1077

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 136/306 (44%), Gaps = 28/306 (9%)
Query: 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV 377
           FS D     SC  D T ++F   +G+++  +KAH   V+   FSSD + + T S D  + 
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF-NFSNS-MIASSSLDGTAK 435
           +WD                 A+ K +H    HS++++ C F N SN  ++A+ S D   K
Sbjct: 690 IWD----------------SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 436 LWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL----LQTF 491
           LWD+    C  T+  H + V    F      LA+ S+D T  LW V  A E     ++ F
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Query: 492 YGHSNEVSKVLDI-----AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
           +  S +  + +++     ++   G K+  A+ ++   L+ +  +  L +   GH + +  
Sbjct: 794 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTSGLLAEIHTGHHSTIQY 852
Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
             F P   L +         LW+ +S   +   + H   V    F+ +G + +TAS D T
Sbjct: 853 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 607 CCIWRS 612
             +W +
Sbjct: 913 IRVWET 918

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 508 YSGSKLATASSDQTAKL---WTVGGAVELLQTFY--GHSNEVSKVSFHPTGKLVLSGSQD 562
           Y  +KL       T +L   W     ++ L       H++ V    F   G+ + S   D
Sbjct: 584 YRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGAD 643
Query: 563 TTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
            T +++  E+GE +  +KAHED+V  C F+ +   I T S D    IW S
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 693

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
           TL+ H G V SL  S+ + N+L++ S D +++ W +     +FG               P
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
           +    GHS  + +C      +   S+S D T +LWDV T   +     H+ +V+ +  D 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
             S + + S D+T  +WT+ G  + L T  GH++ VS+V  +     D     + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
           +  K W +    ++   F GH++ ++ ++  P G L+ S  +D    LW+  + + +  L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
            A +D+VFS  F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
           L GH+  +++   +    +++ S+S D T   W     D +      + K H   V D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
               G+   +AS D+T  LW V    E  Q F GH    S V+ +  D   S + + S D
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
           +T K+WT+ G  + L T  GH++ VS+V   P  K       ++S   D   + W+    
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           +       H  ++ +   + +G  I +A KD    +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
           TL+ H G V SL  S+ + N+L++ S D +++ W +     +FG               P
Sbjct: 6   TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 51
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
           +    GHS  + +C      +   S+S D T +LWDV T   +     H+ +V+ +  D 
Sbjct: 52  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
             S + + S D+T  +WT+ G  + L T  GH++ VS+V  +     D     + +A +D
Sbjct: 112 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 169
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
           +  K W +    ++   F GH++ ++ ++  P G L+ S  +D    LW+  + + +  L
Sbjct: 170 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 228
Query: 580 KAHEDDVFSCGFNYN 594
            A +D+VFS  F+ N
Sbjct: 229 SA-QDEVFSLAFSPN 242

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
           L GH+  +++   +    +++ S+S D T   W     D +      + K H   V D  
Sbjct: 7   LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
               G+   +AS D+T  LW V    E  Q F GH    S V+ +  D   S + + S D
Sbjct: 67  LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 122
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
           +T K+WT+ G  + L T  GH++ VS+V   P  K       ++S   D   + W+    
Sbjct: 123 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           +       H  ++ +   + +G  I +A KD    +W
Sbjct: 181 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
           TL+ H G V SL  S+ + N+L++ S D +++ W +     +FG               P
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
           +    GHS  + +C      +   S+S D T +LWDV T   +     H+ +V+ +  D 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
             S + + S D+T  +WT+ G  + L T  GH++ VS+V  +     D     + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
           +  K W +    ++   F GH++ ++ ++  P G L+ S  +D    LW+  + + +  L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
            A +D+VFS  F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
           L GH+  +++   +    +++ S+S D T   W     D +      + K H   V D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
               G+   +AS D+T  LW V    E  Q F GH    S V+ +  D   S + + S D
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
           +T K+WT+ G  + L T  GH++ VS+V   P  K       ++S   D   + W+    
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           +       H  ++ +   + +G  I +A KD    +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
           TL+ H G V SL  S+ + N+L++ S D +++ W +     +FG               P
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
           +    GHS  + +C      +   S+S D T +LWDV T   +     H+ +V+ +  D 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
             S + + S D+T  +WT+ G  + L T  GH++ VS+V  +     D     + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
           +  K W +    ++   F GH++ ++ ++  P G L+ S  +D    LW+  + + +  L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
            A +D+VFS  F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
           L GH+  +++   +    +++ S+S D T   W     D +      + K H   V D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
               G+   +AS D+T  LW V    E  Q F GH    S V+ +  D   S + + S D
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
           +T K+WT+ G  + L T  GH++ VS+V   P  K       ++S   D   + W+    
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           +       H  ++ +   + +G  I +A KD    +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
           TL+ H G V SL  S+ + N+L++ S D +++ W +     +FG               P
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
           +    GHS  + +C      +   S+S D T +LWDV T   +     H+ +V+ +  D 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
             S + + S D+T  +WT+ G  + L T  GH++ VS+V  +     D     + +A +D
Sbjct: 118 KASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
           +  K W +    ++   F GH++ ++ ++  P G L+ S  +D    LW+  + + +  L
Sbjct: 176 KMVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
            A +D+VFS  F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
           L GH+  +++   +    +++ S+S D T   W     D +      + K H   V D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
               G+   +AS D+T  LW V    E  Q F GH    S V+ +  D   S + + S D
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHK---SDVMSVDIDKKASMIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
           +T K+WT+ G  + L T  GH++ VS+V   P  K       ++S   D   + W+    
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           +       H  ++ +   + +G  I +A KD    +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 25/285 (8%)
Query: 202 CLTGSYDRTCKLWDIKSGHEICTY--RGHQNVVYAVAFSE--PYGCLTGSYDRTCKLWDI 257
            +TGS D   K+W  +       +   GHQ  V +V  S   P    + S D   +LWD+
Sbjct: 51  VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAA-SSSLDAHIRLWDL 109
Query: 258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECIQTYRGHSA 314
           ++G +I +        + +AFS P    + TG+    + ++   +  KE  + T      
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS 374
            + +SPD     S ++D    IF+  +G+ +HTL+ H  P+ SL FS D  +L+T S D 
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA 434
            I ++D+Q+      A    T          L+GH+  + N  F   ++   SSS D + 
Sbjct: 229 YIKIYDVQH------ANLAGT----------LSGHASWVLNVAFCPDDTHFVSSSSDKSV 272
Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
           K+WDV T  C +T  +H+D+V  + ++ +GSK+ +   DQ  +++
Sbjct: 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 139/307 (45%), Gaps = 35/307 (11%)
Query: 226 RGHQNVVYAVAFS-----EPYGCLTGSYDRTCKLWDIKSGHEICTY--RGHQNVVYAVAF 278
           + H + +++VA+           +TGS D   K+W  +       +   GHQ  V +V  
Sbjct: 29  QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI 88
Query: 279 SE--PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHT 333
           S   P      + S D  ++LW     + I++      +   + FSPD     + +    
Sbjct: 89  SHTLPIA---ASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGK 145
Query: 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393
             IF   SG++ ++L      ++S+ +S D   L +G+ D  I ++DI            
Sbjct: 146 VNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI------------ 193
Query: 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
               A+ K +H L GH+  I +  F+  + ++ ++S DG  K++DV+      TL  H  
Sbjct: 194 ----ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513
            VL++AF    +   ++SSD++  +W V G    + TF+ H ++V  V    ++ +GSK+
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDV-GTRTCVHTFFDHQDQVWGV---KYNGNGSKI 305
Query: 514 ATASSDQ 520
            +   DQ
Sbjct: 306 VSVGDDQ 312

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 138/347 (39%), Gaps = 61/347 (17%)
Query: 267 RGHQNVVYAVAFS---EPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQS 323
           + H + +++VA+    +   + ++TGS D  +K+W          +R    ++ +S    
Sbjct: 29  QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW---------KWRDERLDLQWS---- 75
Query: 324 TFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY 383
                                   L+ H   V+S+  S    +  + S D+ I +WD++ 
Sbjct: 76  ------------------------LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE- 110
Query: 384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC 443
                          + K I  +     +     F+  +  +A+ +  G   ++ V +  
Sbjct: 111 ---------------NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK 155
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLD 503
             Y+L      +L IA+   G  LA+ + D   N++ +    +LL T  GH+  +     
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRS--- 211
Query: 504 IAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDT 563
           + F      L TAS D   K++ V  A  L  T  GH++ V  V+F P     +S S D 
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK 270
Query: 564 TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           + ++W   +  C+     H+D V+   +N NG  I++   D    I+
Sbjct: 271 SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
           +T RGH A++    +  D     S S D    I+++ +  ++H +   +  V++  ++  
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
            N +  G  D+   +    Y   TR    E   R S +    L GH+  +S C F   ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
            I +SS D T  LWD+ T     T   H  +V+ ++         + + D +A LW V  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
            +   QTF GH ++++    I F  +G+  AT S D T +L+ +    EL+   Y H N 
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
              ++ VSF  +G+L+L+G  D  C +W     +   VL  H++ V   G   +G  + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
            S D+   IW
Sbjct: 330 GSWDSFLKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
           +T RGH A++    +  D     S S D    I+++ +  ++H +   +  V++  ++  
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
            N +  G  D+   +    Y   TR    E   R S +    L GH+  +S C F   ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
            I +SS D T  LWD+ T     T   H  +V+ ++         + + D +A LW V  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
            +   QTF GH ++++    I F  +G+  AT S D T +L+ +    EL+   Y H N 
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
              ++ VSF  +G+L+L+G  D  C +W     +   VL  H++ V   G   +G  + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
            S D+   IW
Sbjct: 330 GSWDSFLKIW 339

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
           +T RGH A++    +  D     S S D    I+++ +  ++H +   +  V++  ++  
Sbjct: 60  RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 119
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
            N +  G  D+   +    Y   TR    E   R S +    L GH+  +S C F   ++
Sbjct: 120 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 166
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
            I +SS D T  LWD+ T     T   H  +V+ ++         + + D +A LW V  
Sbjct: 167 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
            +   QTF GH ++++    I F  +G+  AT S D T +L+ +    EL+   Y H N 
Sbjct: 227 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 280
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
              ++ VSF  +G+L+L+G  D  C +W     +   VL  H++ V   G   +G  + T
Sbjct: 281 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 340
Query: 601 ASKDNTCCIW 610
            S D+   IW
Sbjct: 341 GSWDSFLKIW 350

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
           +T RGH A++    +  D     S S D    I+++ +  ++H +   +  V++  ++  
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
            N +  G  D+   +    Y   TR    E   R S +    L GH+  +S C F   ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
            I +SS D T  LWD+ T     T   H  +V+ ++         + + D +A LW V  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
            +   QTF GH ++++    I F  +G+  AT S D T +L+ +    EL+   Y H N 
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
              ++ VSF  +G+L+L+G  D  C +W     +   VL  H++ V   G   +G  + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
            S D+   IW
Sbjct: 330 GSWDSFLKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 25/310 (8%)
Query: 307 QTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
           +T RGH A++    +  D     S S D    I+++ +  ++H +   +  V++  ++  
Sbjct: 49  RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 364 RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS 423
            N +  G  D+   +    Y   TR    E   R S +    L GH+  +S C F   ++
Sbjct: 109 GNYVACGGLDNICSI----YNLKTR----EGNVRVSRE----LAGHTGYLSCCRF-LDDN 155
Query: 424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG 483
            I +SS D T  LWD+ T     T   H  +V+ ++         + + D +A LW V  
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN- 542
            +   QTF GH ++++    I F  +G+  AT S D T +L+ +    EL+   Y H N 
Sbjct: 216 GM-CRQTFTGHESDINA---ICFFPNGNAFATGSDDATCRLFDLRADQELMT--YSHDNI 269
Query: 543 --EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
              ++ VSF  +G+L+L+G  D  C +W     +   VL  H++ V   G   +G  + T
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329
Query: 601 ASKDNTCCIW 610
            S D+   IW
Sbjct: 330 GSWDSFLKIW 339

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 25/255 (9%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDI---QYQFGTRNAYAESTYRASHKP 402
           TL+ H G V SL  S+ + N+L++ S D +++ W +     +FG               P
Sbjct: 12  TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------P 57
Query: 403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY 462
           +    GHS  + +C      +   S+S D T +LWDV T   +     H+ +V  +  D 
Sbjct: 58  VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA---FDYSGSKLATASSD 519
             S + + S D+T  +WT+ G  + L T  GH++ VS+V  +     D     + +A +D
Sbjct: 118 KASXIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGND 175
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL 579
           +  K W +    ++   F GH++ ++ ++  P G L+ S  +D    LW+  + +    L
Sbjct: 176 KXVKAWNL-NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTL 234
Query: 580 KAHEDDVFSCGFNYN 594
            A +D+VFS  F+ N
Sbjct: 235 SA-QDEVFSLAFSPN 248

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 18/217 (8%)
Query: 406 LTGHSQEISNCLFNFSN-SMIASSSLDGTAKLW-----DVRTMCCFYTLKNHEDEVLDIA 459
           L GH+  +++   +    +++ S+S D T   W     D +      + K H   V D  
Sbjct: 13  LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
               G+   +AS D+T  LW V    E  Q F GH ++V  V DI  D   S + + S D
Sbjct: 73  LTADGAYALSASWDKTLRLWDVATG-ETYQRFVGHKSDVXSV-DI--DKKASXIISGSRD 128
Query: 520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL------VLSGSQDTTCRLWSTESG 573
           +T K+WT+ G  + L T  GH++ VS+V   P  K       ++S   D   + W+    
Sbjct: 129 KTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF 186
Query: 574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           +       H  ++ +   + +G  I +A KD    +W
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 130/273 (47%), Gaps = 34/273 (12%)
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399
           +S Q +H     +  V  LQ+  D   +++G  D++I +WD                + +
Sbjct: 121 HSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWD----------------KNT 162
Query: 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
            +   ILTGH+  +  CL  +   +I + S D T ++WDV T     TL +H + VL + 
Sbjct: 163 LECKRILTGHTGSVL-CL-QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR 220
Query: 460 FDYSGSKLATASSDQTANLWTVGGA--VELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS 517
           F+     + T S D++  +W +     + L +   GH   V+ V     D+    + +AS
Sbjct: 221 FN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV-----DFDDKYIVSAS 273
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577
            D+T K+W      E ++T  GH   ++ + +    +LV+SGS D T RLW  E G C++
Sbjct: 274 GDRTIKVWNTS-TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR 330
Query: 578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           VL+ HE ++  C   ++   I++ + D    +W
Sbjct: 331 VLEGHE-ELVRC-IRFDNKRIVSGAYDGKIKVW 361

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 161/352 (45%), Gaps = 33/352 (9%)
Query: 265 TYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV--TFSPD 321
           T RGH  +V+  + F + Y   ++TG+ DK ++++ S  ++ +    GH   V       
Sbjct: 116 TLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM--LITGSFDSSIVVW 379
                S S D T R+++   G   H  + H   V  L     +N+  ++TGS D+++ VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 380 DIQYQFGTRNAYAESTYR-ASHKP------IHILTGHSQEISNCLFNFSNSMIASSSLDG 432
            +  +    +   E  Y    H P      + +L GH   +     +   +++ S S D 
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN 290
Query: 433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492
           T  +WDV  M C Y L  H D +    +D+   +  +AS D T  +W +    EL+ T  
Sbjct: 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQ 349
Query: 493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF-YGHSNEVSKVSFHP 551
           GH+  V          S   L +A++D + + W    A +  + F Y H+N  +  +F+ 
Sbjct: 350 GHTALVG-----LLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYV 401
Query: 552 TGKLVLSGSQDTTCRLWSTESGECIQ--VLKAHEDDVFSCGFNYNGDTIITA 601
           +  +++SGS++    +++  SG+ +   +LK   D ++S   N+ G T++ A
Sbjct: 402 SDNILVSGSEN-QFNIYNLRSGKLVHANILK-DADQIWSV--NFKGKTLVAA 449

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 114/268 (42%), Gaps = 50/268 (18%)
Query: 347 TLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
           TL+ H   VI+ LQF  + N +ITG+ D  I V+D                  + K +  
Sbjct: 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYD----------------SINKKFLLQ 157
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV--LDIAFDYS 463
           L+GH   +   L      ++ S S D T ++WD++  CC +  + H   V  LDI  +Y 
Sbjct: 158 LSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV-EYK 215
Query: 464 GSK-LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
             K + T S D T ++W +        +   H  E         DY    L   + ++  
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKE----SSVPDHGEE--------HDYP---LVFHTPEENP 260
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
             + VG          GH   V  VS H  G +V+SGS D T  +W     +C+ +L  H
Sbjct: 261 --YFVG-------VLRGHMASVRTVSGH--GNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
            D ++S  +++     I+AS D T  IW
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIW 337

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
           T  GH   V   L    +Y    + T + D+  +++       LLQ   GH   V  + +
Sbjct: 116 TLRGHMTSVITCLQFEDNY----VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 550 HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF--NYNGDTIITASKDNTC 607
              G LV SGS D T R+W  + G C  V + H   V         N   I+T S+DNT 
Sbjct: 171 AHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 608 CIWR 611
            +W+
Sbjct: 230 HVWK 233

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 159/352 (45%), Gaps = 33/352 (9%)
Query: 265 TYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV--TFSPD 321
           T RGH  +V+  + F + Y   ++TG+ DK ++++ S  ++ +    GH   V       
Sbjct: 116 TLRGHXTSVITCLQFEDNY---VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH 172
Query: 322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM--LITGSFDSSIVVW 379
                S S D T R+++   G   H  + H   V  L     +N+  ++TGS D+++ VW
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 380 DIQYQFGTRNAYAESTYR-ASHKP------IHILTGHSQEISNCLFNFSNSMIASSSLDG 432
            +  +    +   E  Y    H P      + +L GH   +     +   +++ S S D 
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDN 290
Query: 433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY 492
           T  +WDV    C Y L  H D +    +D+   +  +AS D T  +W +    EL  T  
Sbjct: 291 TLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG-ELXYTLQ 349
Query: 493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF-YGHSNEVSKVSFHP 551
           GH+  V          S   L +A++D + + W    A +  + F Y H+N  +  +F+ 
Sbjct: 350 GHTALVG-----LLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYV 401
Query: 552 TGKLVLSGSQDTTCRLWSTESGECIQ--VLKAHEDDVFSCGFNYNGDTIITA 601
           +  +++SGS++    +++  SG+ +   +LK   D ++S   N+ G T++ A
Sbjct: 402 SDNILVSGSEN-QFNIYNLRSGKLVHANILKD-ADQIWSV--NFKGKTLVAA 449

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 114/268 (42%), Gaps = 50/268 (18%)
Query: 347 TLKAHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
           TL+ H   VI+ LQF  + N +ITG+ D  I V+D                  + K +  
Sbjct: 116 TLRGHXTSVITCLQF--EDNYVITGADDKXIRVYD----------------SINKKFLLQ 157
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV--LDIAFDYS 463
           L+GH   +   L      ++ S S D T ++WD++  CC +  + H   V  LDI  +Y 
Sbjct: 158 LSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV-EYK 215
Query: 464 GSK-LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
             K + T S D T ++W +        +   H  E         DY    L   + ++  
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKE----SSVPDHGEE--------HDYP---LVFHTPEENP 260
Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
             + VG          GH   V  VS H  G +V+SGS D T  +W     +C+ +L  H
Sbjct: 261 --YFVG-------VLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
            D ++S  +++     I+AS D T  IW
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIW 337

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
           T  GH   V   L    +Y    + T + D+  +++       LLQ   GH   V  + +
Sbjct: 116 TLRGHXTSVITCLQFEDNY----VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 550 HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF--NYNGDTIITASKDNTC 607
              G LV SGS D T R+W  + G C  V + H   V         N   I+T S+DNT 
Sbjct: 171 AHGGILV-SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 608 CIWR 611
            +W+
Sbjct: 230 HVWK 233

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 16/239 (6%)
Query: 347 TLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
           T++AHT  V ++    D  +++++ S D SI++W +        AY  +  R        
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKD---DKAYGVAQRR-------- 425
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
           LTGHS  + + + +       S S DG  +LWD+           H  +VL +AF     
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 466 KLATASSDQTANLWTVGGAVE--LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK 523
           ++ +AS D+T  LW   G  +  + +   GH + VS V   + +     + +AS D+T K
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCV-RFSPNTLQPTIVSASWDKTVK 544
Query: 524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
           +W +    +L  T  GH+  VS V+  P G L  SG +D    LW    G+ +  L+A+
Sbjct: 545 VWNLSN-CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN 602

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 14/215 (6%)
Query: 406 LTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFY-----TLKNHEDEVLDIA 459
           +  H+  ++       N+ +I S+S D +  LW +      Y      L  H   V D+ 
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
               G    + S D    LW +   V   + F GH+ +V   L +AF     ++ +AS D
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVST-RRFVGHTKDV---LSVAFSLDNRQIVSASRD 493
Query: 520 QTAKLWTVGGAVE--LLQTFYGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWSTESGEC 575
           +T KLW   G  +  + +   GH + VS V F P      ++S S D T ++W+  + + 
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
              L  H   V +   + +G    +  KD    +W
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 147/328 (44%), Gaps = 36/328 (10%)
Query: 305 CIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS 361
           C +T +GHS +V    ++P+++   S S D    ++N  + Q+ H +K H   V+   F+
Sbjct: 58  CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 362 SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI-HILTGHSQEISNCLF-N 419
            +   +  G  DS+  ++++  Q            R  + P+  +LTGH    S+C +  
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQ----------ADRDGNMPVSRVLTGHKGYASSCQYVP 167
Query: 420 FSNSMIASSSLDGTAKLWDVRT---MCCFYT--LKNHEDEVLDIAFD-YSGSKLATASSD 473
              + + + S D T  LWDV T   +  F +     H  +VL ++ +  + +   + S D
Sbjct: 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD 227
Query: 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL 533
            T  LW +      ++T++GH  +++ V    F   G +  T S D T +L+ +    + 
Sbjct: 228 TTVRLWDLRITSRAVRTYHGHEGDINSV---KFFPDGQRFGTGSDDGTCRLFDMRTGHQ- 283
Query: 534 LQTFYGHSNE-------VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL----KAH 582
           LQ +    +        V+ V+F  +G+L+ +G  +  C +W T   E +  L     +H
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIW 610
           E  +   G + +G  + T S D    IW
Sbjct: 344 EGRISCLGLSSDGSALCTGSWDKNLKIW 371

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 101/209 (48%), Gaps = 14/209 (6%)
Query: 414 SNCLF---NFSNSMIASSSLDGTAKLWDVRT---MCCFYTLKNHEDEVLDIAFDYSGSKL 467
           S C F   N + +++AS   D   ++W       +C     + H+  V  +A+   G+ L
Sbjct: 17  SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 468 ATASSDQTANLWTVG-GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT 526
           A+AS D T  +W       E + T  GH NEV  V   A+  SG+ LAT S D++  +W 
Sbjct: 77  ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV---AWAPSGNLLATCSRDKSVWVWE 133
Query: 527 VG--GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE--CIQVLKAH 582
           V      E +     H+ +V  V +HP+ +L+ S S D T +L+  E  +  C   L+ H
Sbjct: 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 193
Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIWR 611
           E  V+S  F+ +G  + + S D T  IWR
Sbjct: 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWR 222

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 123/285 (43%), Gaps = 52/285 (18%)
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
           + S+ FS D   L TG+ D  I +WDI+                + K + IL GH Q+I 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIE----------------NRKIVMILQGHEQDIY 169
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK-LATASSD 473
           +  +  S   + S S D T ++WD+RT  C  TL + ED V  +A      K +A  S D
Sbjct: 170 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLD 228
Query: 474 QTANLW--TVGGAVELL----QTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV 527
           +   +W    G  VE L    ++  GH + V  V+   F   G  + + S D++ KLW +
Sbjct: 229 RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV---FTRDGQSVVSGSLDRSVKLWNL 285
Query: 528 -------------GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574
                         G  E+  T+ GH + V  V+     + +LSGS+D     W  +SG 
Sbjct: 286 QNANNKSDSKTPNSGTCEV--TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 575 CIQVLKAHEDDVFSC--------GFNYNGDTIITASKDNTCCIWR 611
            + +L+ H + V S         G  YN     T S D    IW+
Sbjct: 344 PLLMLQGHRNSVISVAVANGSSLGPEYN--VFATGSGDCKARIWK 386

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 455 VLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY--SGSK 512
           +  + F   G  LAT + D+   +W +    +++    GH  ++      + DY  SG K
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDI-----YSLDYFPSGDK 179
Query: 513 LATASSDQTAKLWTVG-GAVELLQTFYGHSNEVSKVSFHP-TGKLVLSGSQDTTCRLWST 570
           L + S D+T ++W +  G   L  +     + V+ V+  P  GK + +GS D   R+W +
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 571 ESGECIQVLKA-------HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
           E+G  ++ L +       H+D V+S  F  +G ++++ S D +  +W   N
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 27/288 (9%)
Query: 323 STFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQ 382
           S   S S D T R+++ +       +    G + S+ + S++ +L+ G  D+ I   +  
Sbjct: 30  SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXI---NGV 86
Query: 383 YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM 442
             F T          +   P++ L GH   +  C  +F + ++ S S D TAK+W   ++
Sbjct: 87  PLFAT----------SGEDPLYTLIGHQGNV--CSLSFQDGVVISGSWDKTAKVWKEGSL 134
Query: 443 CCFYTLKNHEDEVLDI-AFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKV 501
              Y L+ H   V D     +S +K  TAS+D+T  LW      ++++TF G  N+V + 
Sbjct: 135 V--YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ---NDKVIKTFSGIHNDVVRH 189
Query: 502 LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ 561
           L +  D       + S+D   KL       ++L+T+ GH + V  +   P G +V  G +
Sbjct: 190 LAVVDD---GHFISCSNDGLIKLVDXHTG-DVLRTYEGHESFVYCIKLLPNGDIVSCG-E 244
Query: 562 DTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCI 609
           D T R+WS E+G   QV+      ++S     NGD II  S DN   I
Sbjct: 245 DRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGD-IIVGSSDNLVRI 291

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF-SE 239
           + L+ H   ++++     G   L+GS+D T +LWD+ +G     + GH   V +VAF S+
Sbjct: 80  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 240 PYGCLTGSYDRTCKLWDIKSGHEICTY----RGHQNVVYAVAFSEPYGDKILTG-SFDKT 294
               ++GS D+T KLW+      +C Y      H   V  V FS    + I+    +DK 
Sbjct: 140 NRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 196
Query: 295 LKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
           +K+W  A  +    + GH+     VT SPD S   S   D  A +++ N G+ ++TL   
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG- 255
Query: 352 TGPVI-SLQFSSDRNMLITGSFDSSIVVWDIQ 382
            G +I +L FS +R  L   +   SI +WD++
Sbjct: 256 -GDIINALCFSPNRYWLCAAT-GPSIKIWDLE 285

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 14/238 (5%)
Query: 347 TLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
           TLK H G V  +  +    +M+++ S D +I++W +     TR+   E+ Y     P   
Sbjct: 33  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-----TRD---ETNYGI---PQRA 81
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
           L GHS  +S+ + +       S S DGT +LWD+ T         H  +VL +AF     
Sbjct: 82  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           ++ + S D+T  LW   G  +       HS  VS V   + + S   + +   D+  K+W
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV-RFSPNSSNPIIVSCGWDKLVKVW 200
Query: 526 TVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
            +    +L     GH+  ++ V+  P G L  SG +D    LW    G+ +  L   +
Sbjct: 201 NLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG------GAVELLQTFYGH 540
           L  T  GH+  V+++           + +AS D+T  +W +       G  +  +   GH
Sbjct: 30  LRGTLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALRGH 85
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
           S+ VS V     G+  LSGS D T RLW   +G   +    H  DV S  F+ +   I++
Sbjct: 86  SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 601 ASKDNTCCIWRSM 613
            S+D T  +W ++
Sbjct: 146 GSRDKTIKLWNTL 158

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 16/212 (7%)
Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF-SE 239
           + L+ H   ++++     G   L+GS+D T +LWD+ +G     + GH   V +VAF S+
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 240 PYGCLTGSYDRTCKLWDIKSGHEICTY----RGHQNVVYAVAFSEPYGDKILTG-SFDKT 294
               ++GS D+T KLW+      +C Y      H   V  V FS    + I+    +DK 
Sbjct: 117 NRQIVSGSRDKTIKLWNTLG---VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL 173
Query: 295 LKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH 351
           +K+W  A  +    + GH+     VT SPD S   S   D  A +++ N G+ ++TL   
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG- 232
Query: 352 TGPVI-SLQFSSDRNMLITGSFDSSIVVWDIQ 382
            G +I +L FS +R  L   +   SI +WD++
Sbjct: 233 -GDIINALCFSPNRYWLCAAT-GPSIKIWDLE 262

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 14/238 (5%)
Query: 347 TLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
           TLK H G V  +  +    +M+++ S D +I++W +     TR+   E+ Y     P   
Sbjct: 10  TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-----TRD---ETNYGI---PQRA 58
Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS 465
           L GHS  +S+ + +       S S DGT +LWD+ T         H  +VL +AF     
Sbjct: 59  LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW 525
           ++ + S D+T  LW   G  +       HS  VS V   + + S   + +   D+  K+W
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCV-RFSPNSSNPIIVSCGWDKLVKVW 177
Query: 526 TVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
            +    +L     GH+  ++ V+  P G L  SG +D    LW    G+ +  L   +
Sbjct: 178 NLANC-KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG------GAVELLQTFY 538
           + L  T  GH+  V+++           + +AS D+T  +W +       G  +  +   
Sbjct: 5   MTLRGTLKGHNGWVTQIATTP--QFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALR 60
Query: 539 GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI 598
           GHS+ VS V     G+  LSGS D T RLW   +G   +    H  DV S  F+ +   I
Sbjct: 61  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 599 ITASKDNTCCIWRSM 613
           ++ S+D T  +W ++
Sbjct: 121 VSGSRDKTIKLWNTL 135

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 102/202 (50%), Gaps = 25/202 (12%)
Query: 203 LTGSYDRTCKLWDI----KSGHEICTYR---GHQNVVYAVAFS-EPYGCLTGSYDRTCKL 254
           ++GS D+T  +W +    ++G+    ++   GH + V  +A S E    ++ S+D+T +L
Sbjct: 43  ISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102
Query: 255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW--------ASAKEE-- 304
           WD+++G     + GHQ+ VY+VAFS P   +IL+   ++ +KLW        +SA++E  
Sbjct: 103 WDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 305 -----CIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQ 359
                C++      +     P    F S   D   +++NTN  Q  +T KAH   V  L 
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLS 220
Query: 360 FSSDRNMLITGSFDSSIVVWDI 381
            S +   + TG  D  +++WDI
Sbjct: 221 ISPNGKYIATGGKDKKLLIWDI 242

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 19/216 (8%)
Query: 361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420
           + D  +LI+GS D ++++W +  +   +N Y    ++A       LTGH+  +S+   + 
Sbjct: 36  NEDSPVLISGSRDKTVMIWKLYEE--EQNGYFGIPHKA-------LTGHNHFVSDLALSQ 86
Query: 421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT 480
            N    SSS D T +LWD+RT   +     H+ EV  +AF     ++ +A +++   LW 
Sbjct: 87  ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 481 VGGAVELLQTFY-GHSNEVSKVLDIAFDYSGSKL-------ATASSDQTAKLWTVGGAVE 532
           + G  +        HS+ VS V       S +K+       A+   D   K+W      +
Sbjct: 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQ 204
Query: 533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
           +  TF  H + V+ +S  P GK + +G +D    +W
Sbjct: 205 IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 29/234 (12%)
Query: 405 ILTGHSQEISNCLFNFS------NSMIASSSLDGTAKLWDV--RTMCCFY-----TLKNH 451
           IL GHS  +++ +  FS      + ++ S S D T  +W +       ++      L  H
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS 511
              V D+A         ++S D+T  LW +       + F GH +EV     +AF     
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEV---YSVAFSPDNR 131
Query: 512 KLATASSDQTAKLWTVGGAVELLQTFY-GHSNEVSKVSFHPTGK----------LVLSGS 560
           ++ +A +++  KLW + G  +        HS+ VS V + P  K             S  
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 561 QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
            D   ++W+T + +     KAHE +V     + NG  I T  KD    IW  +N
Sbjct: 192 WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 129/302 (42%), Gaps = 43/302 (14%)
Query: 346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD-----------IQYQFGTRNAYAES 394
            TLK H   V+ + +  D+  +++ S D  ++VWD           +   +    AYA S
Sbjct: 58  RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 395 ---------TYRASHKPIHI------------LTGHSQEISNCLFNFSNSMIASSSLDGT 433
                      + S  P+              +  H+  +S C F  S+  I ++S DGT
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 434 AKLWDVRTMCCFYTLKNHEDEVL--DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTF 491
             LWDV +     +   H  +VL  D+A   +G+   +   D+ A +W +    + +Q F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG-QCVQAF 236
Query: 492 YGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV---SKVS 548
             H ++V+ V    +  SG   A+ S D T +L+ +    E+    Y   + +   S V 
Sbjct: 237 ETHESDVNSV---RYYPSGDAFASGSDDATCRLYDLRADREV--AIYSKESIIFGASSVD 291
Query: 549 FHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCC 608
           F  +G+L+ +G  D T  +W    G  + +L  HE+ V +   + +G    + S D+T  
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 609 IW 610
           +W
Sbjct: 352 VW 353

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 142/322 (44%), Gaps = 46/322 (14%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
           MKL   +K+ F+ R ++ K           I F       LT  Y    +LW+ ++  E+
Sbjct: 1   MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVELWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
            + +  +  V A  F +     + GS D   ++++  +G ++  +  H + + ++A   +
Sbjct: 49  RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
           +PY   +L+GS D T+KLW       + QT+ GH      V F+P D STF S  +D T 
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
           ++++   GQ        TG    + +       D+  +IT S D +I +WD Q    T++
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKS 219
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK 449
             A             L GH   +S  +F+ +  +I S S DGT K+W+  T     TL 
Sbjct: 220 CVA------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 450 NHEDEVLDIAFDYSGSKLATAS 471
              +    IA   +G K   AS
Sbjct: 268 VGLERSWCIATHPTGRKNYIAS 289

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
           + F P +    +        ++N  +  E+ +++    PV + +F + +N +I GS D  
Sbjct: 19  IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
           I V++  Y  G +    E+              H   I +   + +   + S S D T K
Sbjct: 79  IRVFN--YNTGEKVVDFEA--------------HPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
           LW+         T + HE  V+ +AF+    S  A+   D+T  +W++G +        G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
               V+ V     DY        + TAS D T K+W        + T  GH + VS   F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
           HPT  +++SGS+D T ++W++             E   CI        +  + GF+ NG 
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
           T+++   D
Sbjct: 296 TVLSLGND 303

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
           H D +  IA   +   + + S D T  LW       L QTF GH +    V+ +AF+   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
            S  A+   D+T K+W++G +        G    V+ V ++P      +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
           W  ++  C+  L+ H  +V    F+     II+ S+D T  IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 142/322 (44%), Gaps = 46/322 (14%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
           MKL   +K+ F+ R ++ K           I F       LT  Y    +LW+ ++  E+
Sbjct: 1   MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVELWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
            + +  +  V A  F +     + GS D   ++++  +G ++  +  H + + ++A   +
Sbjct: 49  RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
           +PY   +L+GS D T+KLW       + QT+ GH      V F+P D STF S  +D T 
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
           ++++   GQ        TG    + +       D+  +IT S D +I +WD Q    T++
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKS 219
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK 449
             A             L GH   +S  +F+ +  +I S S DGT K+W+  T     TL 
Sbjct: 220 CVA------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 450 NHEDEVLDIAFDYSGSKLATAS 471
              +    IA   +G K   AS
Sbjct: 268 VGLERSWCIATHPTGRKNYIAS 289

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
           + F P +    +        ++N  +  E+ +++    PV + +F + +N +I GS D  
Sbjct: 19  IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
           I V++  Y  G +    E+              H   I +   + +   + S S D T K
Sbjct: 79  IRVFN--YNTGEKVVDFEA--------------HPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
           LW+         T + HE  V+ +AF+    S  A+   D+T  +W++G +        G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
               V+ V     DY        + TAS D T K+W        + T  GH + VS   F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
           HPT  +++SGS+D T ++W++             E   CI        +  + GF+ NG 
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
           T+++   D
Sbjct: 296 TVLSLGND 303

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
           H D +  IA   +   + + S D T  LW       L QTF GH +    V+ +AF+   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
            S  A+   D+T K+W++G +        G    V+ V ++P      +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
           W  ++  C+  L+ H  +V    F+     II+ S+D T  IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 134/299 (44%), Gaps = 46/299 (15%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
           MKL   +K+ F+ R ++ K           I F       LT  Y    +LW+ ++  E+
Sbjct: 1   MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVELWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
            + +  +  V A  F +     + GS D   ++++  +G ++  +  H + + ++A   +
Sbjct: 49  RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
           +PY   +L+GS D T+KLW       + QT+ GH      V F+P D STF S  +D T 
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
           ++++   GQ        TG    + +       D+  +IT S D +I +WD Q    T++
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKS 219
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
             A             L GH   +S  +F+ +  +I S S DGT K+W+  T     TL
Sbjct: 220 CVA------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 125/308 (40%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
           + F P +    +        ++N  +  E+ +++    PV + +F + +N +I GS D  
Sbjct: 19  IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
           I V++               Y    K +     H   I +   + +   + S S D T K
Sbjct: 79  IRVFN---------------YNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
           LW+         T + HE  V+ +AF+    S  A+   D+T  +W++G +        G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
               V+ V     DY        + TAS D T K+W        + T  GH + VS   F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
           HPT  +++SGS+D T ++W++             E   CI        +  + GF+ NG 
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
           T+++   D
Sbjct: 296 TVLSLGND 303

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
           H D +  IA   +   + + S D T  LW       L QTF GH +    V+ +AF+   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
            S  A+   D+T K+W++G +        G    V+ V ++P      +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
           W  ++  C+  L+ H  +V    F+     II+ S+D T  IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 132/299 (44%), Gaps = 46/299 (15%)
Query: 163 MKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI 222
           MKL   +K+ F+ R ++ K           I F       LT  Y    ++W+ ++  E+
Sbjct: 1   MKLD--IKKTFSNRSDRVK----------GIDFHPTEPWVLTTLYSGRVEIWNYETQVEV 48
Query: 223 CTYRGHQNVVYAVAF-SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--S 279
            + +  +  V A  F +     + GS D   ++++  +G ++  +  H + + ++A   +
Sbjct: 49  RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPT 108
Query: 280 EPYGDKILTGSFDKTLKLWASAKEECI-QTYRGHSAE---VTFSP-DQSTFCSCSMDHTA 334
           +PY   +L+GS D T+KLW       + QT+ GH      V F+P D STF S  +D T 
Sbjct: 109 KPY---VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 335 RIFNTNSGQEMHTLKAHTGPVISLQFS-----SDRNMLITGSFDSSIVVWDIQYQFGTRN 389
           ++++   GQ        TG    + +       D+  +IT S D +I +WD Q       
Sbjct: 166 KVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ------- 216
Query: 390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
                    +   +  L GH   +S  +F+ +  +I S S DGT K+W+  T     TL
Sbjct: 217 ---------TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 42/308 (13%)
Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
           + F P +    +        I+N  +  E+ +++    PV + +F + +N +I GS D  
Sbjct: 19  IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
           I V++               Y    K +     H   I +   + +   + S S D T K
Sbjct: 79  IRVFN---------------YNTGEKVVD-FEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 436 LWDVRTMCCF-YTLKNHEDEVLDIAFD-YSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
           LW+         T + HE  V+ +AF+    S  A+   D+T  +W++G +        G
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 494 HSNEVSKVLDIAFDY----SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
               V+ V     DY        + TAS D T K+W        + T  GH + VS   F
Sbjct: 183 QERGVNYV-----DYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVATLEGHMSNVSFAVF 236
Query: 550 HPTGKLVLSGSQDTTCRLWST-------------ESGECIQVLKAHEDDVFSCGFNYNGD 596
           HPT  +++SGS+D T ++W++             E   CI        +  + GF+ NG 
Sbjct: 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD-NGF 295
Query: 597 TIITASKD 604
           T+++   D
Sbjct: 296 TVLSLGND 303

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 6/165 (3%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YS 509
           H D +  IA   +   + + S D T  LW       L QTF GH +    V+ +AF+   
Sbjct: 96  HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH---FVMCVAFNPKD 152
Query: 510 GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG--KLVLSGSQDTTCRL 567
            S  A+   D+T K+W++G +        G    V+ V ++P      +++ S D T ++
Sbjct: 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS 612
           W  ++  C+  L+ H  +V    F+     II+ S+D T  IW S
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 35/230 (15%)
Query: 268 GHQNVVYAVAFSE--PYGDKILTGSFDKTLKLWASAKE----ECI-----QTYRGHSA-- 314
           GH+  V ++A  +      K+++ S DKTL  W    +    EC      +   GHSA  
Sbjct: 11  GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 315 -EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD 373
            +V  S + +   S S DH+ R++N  +GQ  +    HT  V+S+ FS D   +++G  D
Sbjct: 71  SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRD 130
Query: 374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFS--NSMIASSS 429
           +++ VW+++ +                  +H L+   H+  +S   F+ S    +I S  
Sbjct: 131 NALRVWNVKGEC-----------------MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGG 173
Query: 430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
            D   K+WD+ T      LK H + V  +     GS  A++  D  A LW
Sbjct: 174 WDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 12/237 (5%)
Query: 348 LKAHTGPVISL---QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH 404
           L  H G V SL   Q       +++ S D +++ W         N    S+  +   P  
Sbjct: 9   LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWG-------PNPDRHSSECSYGLPDR 61
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
            L GHS  +S+   + + +   S+S D + +LW+++   C Y    H  +VL +AF    
Sbjct: 62  RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 465 SKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL 524
            ++ +   D    +W V G      +   H++ VS V   +       + +   D   K+
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR-FSPSLDAPVIVSGGWDNLVKV 180
Query: 525 WTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA 581
           W +     L+    GH+N V+ V+  P G L  S  +D   RLW    GE +  + A
Sbjct: 181 WDLATG-RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 15/197 (7%)
Query: 425 IASSSLDGTAKLW----DVRTMCCFYTLKN-----HEDEVLDIAFDYSGSKLATASSDQT 475
           + S+S D T   W    D  +  C Y L +     H   V D+A   +G+   +AS D +
Sbjct: 31  VVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDHS 90
Query: 476 ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535
             LW +    +    F GH+ +V   L +AF     ++ +   D   ++W V G      
Sbjct: 91  LRLWNLQNG-QCQYKFLGHTKDV---LSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 536 TFYGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY 593
           +   H++ VS V F P+    +++SG  D   ++W   +G  +  LK H + V S   + 
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Query: 594 NGDTIITASKDNTCCIW 610
           +G    ++ KD    +W
Sbjct: 207 DGSLCASSDKDGVARLW 223

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 32/300 (10%)
Query: 327 SCSMDHTARIFNTNSGQEMHTLK-AHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQ 384
           + ++D++  +++ +SG  +  L+    G  IS + +  + N L  G+  + + +WD+Q Q
Sbjct: 131 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 190
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-C 443
              RN                +T HS  + +  +N  + +++S S  G     DVR    
Sbjct: 191 KRLRN----------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 232
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV----GGAVELLQTFYGHSNEVS 499
              TL  H  EV  + +   G  LA+  +D   N+W      GG V L QTF  H   V 
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVK 291
Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
            V    +  +       +SD+  ++W V  GA   L     HS +V  + + P  K ++S
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHS-QVCSILWSPHYKELIS 348
Query: 559 GSQDTTCRL--WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
           G      +L  W   +   +  LK H   V S   + +G T+ +A+ D T  +WR    D
Sbjct: 349 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 408

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 15/203 (7%)
Query: 417 LFNFSNSMIASSSLDGTAKLWDVRT--MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
           L ++S+  + + +LD +  LW   +  +     ++   + +  +A+   G+ LA  +S  
Sbjct: 121 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 180
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
              LW V    + L+    HS  V      +  ++   L++ S         V  A   +
Sbjct: 181 EVQLWDVQ-QQKRLRNMTSHSARVG-----SLSWNSYILSSGSRSGHIHHHDVRVAEHHV 234
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE----CIQVLKAHEDDVFS-- 588
            T  GHS EV  + + P G+ + SG  D    +W +  GE     +Q    H+  V +  
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 589 -CGFNYNGDTIITASKDNTCCIW 610
            C +  N       + D    IW
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIW 317

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 127/300 (42%), Gaps = 32/300 (10%)
Query: 327 SCSMDHTARIFNTNSGQEMHTLK-AHTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQ 384
           + ++D++  +++ +SG  +  L+    G  IS + +  + N L  G+  + + +WD+Q Q
Sbjct: 120 AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 179
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-C 443
              RN                +T HS  + +  +N  + +++S S  G     DVR    
Sbjct: 180 KRLRN----------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 221
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV----GGAVELLQTFYGHSNEVS 499
              TL  H  EV  + +   G  LA+  +D   N+W      GG V L QTF  H   V 
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVK 280
Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
            V    +  +       +SD+  ++W V  GA   L     HS +V  + + P  K ++S
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHS-QVCSILWSPHYKELIS 337
Query: 559 GS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
           G         +W   +   +  LK H   V S   + +G T+ +A+ D T  +WR    D
Sbjct: 338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 15/203 (7%)
Query: 417 LFNFSNSMIASSSLDGTAKLWDVRT--MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
           L ++S+  + + +LD +  LW   +  +     ++   + +  +A+   G+ LA  +S  
Sbjct: 110 LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 169
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
              LW V    + L+    HS  V      +  ++   L++ S         V  A   +
Sbjct: 170 EVQLWDVQ-QQKRLRNMTSHSARVG-----SLSWNSYILSSGSRSGHIHHHDVRVAEHHV 223
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE----CIQVLKAHEDDVFS-- 588
            T  GHS EV  + + P G+ + SG  D    +W +  GE     +Q    H+  V +  
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 589 -CGFNYNGDTIITASKDNTCCIW 610
            C +  N       + D    IW
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIW 306

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 127/300 (42%), Gaps = 32/300 (10%)
Query: 327 SCSMDHTARIFNTNSGQEMHTLKA-HTGPVIS-LQFSSDRNMLITGSFDSSIVVWDIQYQ 384
           + ++D++  +++ +SG  +  L+    G  IS + +  + N L  G+  + + +WD+Q Q
Sbjct: 40  AVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ 99
Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-C 443
              RN                +T HS  + +  +N  + +++S S  G     DVR    
Sbjct: 100 KRLRN----------------MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEH 141
Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV----GGAVELLQTFYGHSNEVS 499
              TL  H  EV  + +   G  LA+  +D   N+W      GG V L QTF  H   V 
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQGAVK 200
Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTV-GGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
            V    +  +       +SD+  ++W V  GA   L     HS +V  + + P  K ++S
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC--LSAVDAHS-QVCSILWSPHYKELIS 257
Query: 559 GS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
           G         +W   +   +  LK H   V S   + +G T+ +A+ D T  +WR    D
Sbjct: 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 12/181 (6%)
Query: 417 LFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE--DEVLDIAFDYSGSKLATASSDQ 474
           L ++S+  + + +LD +  LW   +      L+  +  + +  +A+   G+ LA  +S  
Sbjct: 30  LVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA 89
Query: 475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL 534
              LW V    + L+    HS  V      +  ++   L++ S         V  A   +
Sbjct: 90  EVQLWDVQ-QQKRLRNMTSHSARVG-----SLSWNSYILSSGSRSGHIHHHDVRVAEHHV 143
Query: 535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE----CIQVLKAHEDDVFSCG 590
            T  GHS EV  + + P G+ + SG  D    +W +  GE     +Q    H+  V +  
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 591 F 591
           +
Sbjct: 204 W 204

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 44/294 (14%)
Query: 345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH 404
           + +LK +   + S  FS  + +L TGS D  I +  ++Y   T               I 
Sbjct: 7   IKSLKLYKEKIWSFDFS--QGILATGSTDRKIKLVSVKYDDFT--------------LID 50
Query: 405 IL--TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV-----RT--MCCFYTLKNHEDEV 455
           +L  T H + I +  +    S++A+ S D T  +W       RT  M     ++ HE+EV
Sbjct: 51  VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110
Query: 456 LDIAFDYSGSKLATASSDQTANLWTV---GGAVELLQTFYGHSNEVSKVLDIAFDYSGSK 512
             +A+   G  LAT S D++  +W     G   E +     HS +V  V+   +  S + 
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI---WHPSEAL 167
Query: 513 LATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPTGKL--VLSGSQDTTCRLW- 568
           LA++S D T ++W       E +    GH   V    F  T  +  + SGS D+T R+W 
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Query: 569 -------STESGECIQVL-KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
                    +   C  +L   H+  V++  + +NG  I +   D    ++  ++
Sbjct: 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVD 280

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 459 AFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS 518
           +FD+S   LAT S+D+   L +V      L      +     +  +A+    S LA  S 
Sbjct: 19  SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 519 DQTAKLWTVGGA------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST-E 571
           D T  +W    +      ++LL    GH NEV  V++   G  + + S+D +  +W T E
Sbjct: 79  DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 572 SGE---CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
           SGE   CI VL+ H  DV    ++ +   + ++S D+T  IW+  + D
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 108/296 (36%), Gaps = 57/296 (19%)
Query: 333 TARIFNTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAY 391
           T R+      ++    + H G + +L     +   +++G  D  IV++D++    +R +Y
Sbjct: 24  TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENS--SRQSY 81
Query: 392 ----AESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT 447
               A  +    H  +H  +  + +     +     M  SSS D T K+WD  T+     
Sbjct: 82  YTCKAVCSIGRDHPDVHRYSVETVQ----WYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137
Query: 448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL--------QTFYGHSNEVS 499
             N E+ V      YS      ++      + T G  V+L             GH  E+ 
Sbjct: 138 F-NFEETV------YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190
Query: 500 KV-LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
            V     +DY    LATAS+D   KLW V  A   L T   H+ + S+            
Sbjct: 191 AVSWSPRYDY---ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ------------ 235
Query: 559 GSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
                     + ES        AH   V    F  +G  ++T   DN   +W S N
Sbjct: 236 ----------AVESAN-----TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
           RGHQ   Y ++++      +L+ S D T+ LW   A+ KE  +      + GH+A V   
Sbjct: 182 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 241
Query: 320 P----DQSTFCSCSMDHTARIF---NTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
                 +S F S + D    I+   N N+ +  HT+ AHT  V  L F+     +L TGS
Sbjct: 242 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 301
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
            D ++ +WD+      RN   +         +H    H  EI    ++  N +++ASS  
Sbjct: 302 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
           D    +WD+  +    + ++ ED   ++ F + G
Sbjct: 347 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 380

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 31/239 (12%)
Query: 401 KPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDV-------RTMCCFYTLKNHE 452
           +P   L GH +E     +N + N  + S+S D T  LWD+       R +        H 
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 453 DEVLDIAFDYSGSKL-ATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFD-Y 508
             V D+A+      L  + + DQ   +W        +   T   H+ EV+    ++F+ Y
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPY 292
Query: 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRL 567
           S   LAT S+D+T  LW +      L +F  H +E+ +V + P  + +L+ S  D    +
Sbjct: 293 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 352
Query: 568 W---------STESG-----ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
           W         STE       E + +   H   +    +N N   II + S+DN   +W+
Sbjct: 353 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
           RGHQ   Y ++++      +L+ S D T+ LW   A+ KE  +      + GH+A V   
Sbjct: 180 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 239
Query: 320 P----DQSTFCSCSMDHTARIF---NTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
                 +S F S + D    I+   N N+ +  HT+ AHT  V  L F+     +L TGS
Sbjct: 240 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 299
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
            D ++ +WD+      RN   +         +H    H  EI    ++  N +++ASS  
Sbjct: 300 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
           D    +WD+  +    + ++ ED   ++ F + G
Sbjct: 345 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 378

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 31/239 (12%)
Query: 401 KPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDV-------RTMCCFYTLKNHE 452
           +P   L GH +E     +N + N  + S+S D T  LWD+       R +        H 
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 453 DEVLDIAFDYSGSKL-ATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFD-Y 508
             V D+A+      L  + + DQ   +W        +   T   H+ EV+    ++F+ Y
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPY 290
Query: 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRL 567
           S   LAT S+D+T  LW +      L +F  H +E+ +V + P  + +L+ S  D    +
Sbjct: 291 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 350
Query: 568 W---------STESG-----ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
           W         STE       E + +   H   +    +N N   II + S+DN   +W+
Sbjct: 351 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
           RGHQ   Y ++++      +L+ S D T+ LW   A+ KE  +      + GH+A V   
Sbjct: 178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDV 237
Query: 320 P----DQSTFCSCSMDHTARIF---NTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
                 +S F S + D    I+   N N+ +  HT+ AHT  V  L F+     +L TGS
Sbjct: 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 297
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
            D ++ +WD+      RN   +         +H    H  EI    ++  N +++ASS  
Sbjct: 298 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
           D    +WD+  +    + ++ ED   ++ F + G
Sbjct: 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 31/239 (12%)
Query: 401 KPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDV-------RTMCCFYTLKNHE 452
           +P   L GH +E     +N + N  + S+S D T  LWD+       R +        H 
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 453 DEVLDIAFDYSGSKL-ATASSDQTANLWTV--GGAVELLQTFYGHSNEVSKVLDIAFD-Y 508
             V D+A+      L  + + DQ   +W        +   T   H+ EV+    ++F+ Y
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC---LSFNPY 288
Query: 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRL 567
           S   LAT S+D+T  LW +      L +F  H +E+ +V + P  + +L+ S  D    +
Sbjct: 289 SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348
Query: 568 W---------STESG-----ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
           W         STE       E + +   H   +    +N N   II + S+DN   +W+
Sbjct: 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
           RGHQ   Y ++++      +L+ S D T+ LW   A  KE  I      + GHSA V   
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 320 P----DQSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
                 +S F S + D    I++T S    +  H + AHT  V  L F+     +L TGS
Sbjct: 236 AWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
            D ++ +WD+      RN   +         +H    H  EI    ++  N +++ASS  
Sbjct: 296 ADKTVALWDL------RNLKLK---------LHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
           D    +WD+  +    + ++ ED   ++ F + G
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 406 LTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDV-------RTMCCFYTLKNHEDEVLD 457
           L GH +E     +N + S  + S+S D T  LWD+       + +        H   V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 458 IAFDYSGSKL-ATASSDQTANLW-----TVGGAVELLQTFYGHSNEVSKVLDIAFD-YSG 510
           +A+      L  + + DQ   +W     T      L+     H+ EV+    ++F+ YS 
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVD---AHTAEVNC---LSFNPYSE 288
Query: 511 SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLW- 568
             LAT S+D+T  LW +      L TF  H +E+ +V + P  + +L+ S  D    +W 
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 569 -----------STESG--ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
                        E G  E + +   H   +    +N N   +I + S+DN   IW+
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKEECI----QTYRGHSAEVTFS 319
           RGHQ   Y ++++      +L+ S D T+ LW   A  KE  I      + GHSA V   
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 320 P----DQSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
                 +S F S + D    I++T S    +  H + AHT  V  L F+     +L TGS
Sbjct: 236 AWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
            D ++ +WD+      RN   +         +H    H  EI    ++  N +++ASS  
Sbjct: 296 ADKTVALWDL------RNLKLK---------LHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
           D    +WD+  +    + ++ ED   ++ F + G
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 406 LTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDV-------RTMCCFYTLKNHEDEVLD 457
           L GH +E     +N + S  + S+S D T  LWD+       + +        H   V D
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 458 IAFDYSGSKL-ATASSDQTANLW-----TVGGAVELLQTFYGHSNEVSKVLDIAFD-YSG 510
           +A+      L  + + DQ   +W     T      L+     H+ EV+    ++F+ YS 
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVD---AHTAEVNC---LSFNPYSE 288
Query: 511 SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLW- 568
             LAT S+D+T  LW +      L TF  H +E+ +V + P  + +L+ S  D    +W 
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 569 -----------STESG--ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWR 611
                        E G  E + +   H   +    +N N   +I + S+DN   IW+
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW---ASAKE----ECIQTYRGHSAEVTFS 319
           RGHQ   Y ++++      +L+ S D T+ LW   A  KE    +    + GH+A V   
Sbjct: 174 RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDV 233
Query: 320 P----DQSTFCSCSMDHTARIFNT---NSGQEMHTLKAHTGPVISLQFSS-DRNMLITGS 371
                 +S F S + D    I++T   N+ +  H++ AHT  V  L F+     +L TGS
Sbjct: 234 SWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGS 293
Query: 372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL 430
            D ++ +WD+      RN   +         +H    H  EI    ++  N +++ASS  
Sbjct: 294 ADKTVALWDL------RNLKLK---------LHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 431 DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG 464
           D    +WD+  +    + ++ ED   ++ F + G
Sbjct: 339 DRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGG 372

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 14/124 (11%)
Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEP-Y 241
           SH   + +   D +GTR  T S DR+ K++D+++G +  I   RGH+  V+ VA++ P Y
Sbjct: 11  SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 242 GCLTG--SYDRTCKLWDIKSG-----HEICTYRGHQNVVYAVAFS-EPYGDKILTGSFDK 293
           G +    SYDR   +W  ++G     HE   + GH + V +V ++   YG  +  GS D 
Sbjct: 71  GNILASCSYDRKVIIWREENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 294 TLKL 297
            + L
Sbjct: 128 AISL 131

>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 98/235 (41%), Gaps = 32/235 (13%)
Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT--MCCFYTLKNHEDEVLDIAFDYS- 463
           T H   I +   ++  + +A+ S D + K++DVR         L+ HE  V  +A+ +  
Sbjct: 10  TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM 69
Query: 464 -GSKLATASSDQTANLW-TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQT 521
            G+ LA+ S D+   +W    G  E      GH + V+ V     DY G  LA  SSD  
Sbjct: 70  YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY-GLILACGSSDGA 128
Query: 522 AKL--WTVGGAVELLQTFYGHSNEVSKVSF-----------HPTG------KLVLSGSQD 562
             L  +T  G  E+ +    H+   + VS+           HP+G      K   SG  D
Sbjct: 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD 188
Query: 563 TTCRLW-STESGECI--QVLKAHEDDV----FSCGFNYNGDTIITASKDNTCCIW 610
              +LW   E G+    Q L+AH D V    ++        TI + S+D    IW
Sbjct: 189 NLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 493 GHSNEVSKVLDIAF-DYSGSKLATASSDQTAKLWTV--GGAV----ELLQTFYGHSNEVS 545
           GH+   + VLDIA+  ++ + +A+ S D T  +W +  GG V    E + T  GH+  V 
Sbjct: 79  GHT---APVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 546 KVSFHPTGK-LVLSGSQDTTCRLWSTESGECIQVL--KAHEDDVFSCGFNYNGDTIITAS 602
            V++HPT + ++LS   D    +W   +G  +  L    H D ++S  ++ +G  I T+ 
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 603 KDN 605
           +D 
Sbjct: 196 RDK 198

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 13/123 (10%)
Query: 493 GHSNEVSKVLDIAF-DYSGSKLATASSDQTAKLWTV--GGAV----ELLQTFYGHSNEVS 545
           GH+   + VLDIA+  ++ + +A+ S D T  +W +  GG V    E + T  GH+  V 
Sbjct: 79  GHT---APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 546 KVSFHPTGK-LVLSGSQDTTCRLWSTESGECIQVL--KAHEDDVFSCGFNYNGDTIITAS 602
            V++HPT + ++LS   D    +W   +G  +  L    H D ++S  ++ +G  I T+ 
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 603 KDN 605
           +D 
Sbjct: 196 RDK 198

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 123/286 (43%), Gaps = 44/286 (15%)
Query: 337 FNTNSGQEMHTLKAHTG--PVISLQFSSD--------RNMLITGSFDSSIVVWDIQYQFG 386
           F+T+S  E+ +L A     P+ SLQ  S          N +I G+ D+           G
Sbjct: 41  FSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN-----------G 89
Query: 387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCF 445
           +   Y+ +    +   +   + HS  +    FN   ++++AS   +G   +WD+    C 
Sbjct: 90  SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK--CT 147
Query: 446 YTLKNHE-----------DEVLDIAFDYSGSKL-ATASSDQTANLWTVGGAVELLQTFYG 493
            +  N+            DEV+ +A++ S + + A+A S   A++W +    E++   Y 
Sbjct: 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT 207
Query: 494 HSNE-VSKVLDIA--FDYSGSKLATAS---SDQTAKLWTVGGAVELLQTF-YGHSNEVSK 546
             N  + + L +      + +++ATA+   +D +  +W +  A   LQT   GH   +  
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 547 VSF-HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF 591
           + + H    L+LS  +D T  LW+ ES E +    A  +  F   F
Sbjct: 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF 313

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
           ++ ++ + GH N ++++ FHP    L+LS S+D   RLW+ ++   + +   ++ H D+V
Sbjct: 100 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 159
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
            S  ++  G+ I++   D++  +WR
Sbjct: 160 LSADYDLLGEKIMSCGMDHSLKLWR 184

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
           ++ ++ + GH N ++++ FHP    L+LS S+D   RLW+ ++   + +   ++ H D+V
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
            S  ++  G+ I++   D++  +WR
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWR 188

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
           ++ ++ + GH N ++++ FHP    L+LS S+D   RLW+ ++   + +   ++ H D+V
Sbjct: 105 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
            S  ++  G+ I++   D++  +WR
Sbjct: 165 LSADYDLLGEKIMSCGMDHSLKLWR 189

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
           ++ ++ + GH N ++++ FHP    L+LS S+D   RLW+ ++   + +   ++ H D+V
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 163
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
            S  ++  G+ I++   D++  +WR
Sbjct: 164 LSADYDLLGEKIMSCGMDHSLKLWR 188

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 531 VELLQTFYGHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQV---LKAHEDDV 586
           ++ ++ + GH N ++++ FHP    L+LS S+D   RLW+ ++   + +   ++ H D+V
Sbjct: 141 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 200
Query: 587 FSCGFNYNGDTIITASKDNTCCIWR 611
            S  ++  G+ I++   D++  +WR
Sbjct: 201 LSADYDLLGEKIMSCGMDHSLKLWR 225

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 100/460 (21%), Positives = 183/460 (39%), Gaps = 62/460 (13%)
Query: 201 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSY--DRTCKLWDIK 258
           R ++GS D T  +++        T+  H   V++V ++ P G L  S   D T  L++  
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGV 220
Query: 259 SGHEICTYR-------GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-- 309
            G +   +         H   V+ + +S P G KI + S DKT+K+W  A  +  +T   
Sbjct: 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Query: 310 --RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML 367
             R    ++     +    S S +      N   G        H   + +L  S+D   L
Sbjct: 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339
Query: 368 ITGSFDSSIVVWDIQYQFGTR---NAYA------ESTYRA--------SHKPIHILTGHS 410
            +   +  I  WDI      R   + +A      ++T +          H  +    G  
Sbjct: 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSG 399
Query: 411 QEISNCLFN--FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGS-- 465
            + S  + N   S  +  + S DG     D+    C+  +  +   ++ ++   Y+ S  
Sbjct: 400 VDSSKAVANKLSSQPLGLAVSADG-----DIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454
Query: 466 -------KLATASSDQTANLWTVGGA-VELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS 517
                   +A    D   +++ + GA V  ++T   H  E++ V   AF  +G+ L   +
Sbjct: 455 ALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSV---AFSNNGAFL--VA 508
Query: 518 SDQTAKL--WTVGGAVELLQT--FYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE-- 571
           +DQ+ K+  ++V    EL  T  +  H+ +V+ VS+ P    + +GS D +  +W+    
Sbjct: 509 TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 568
Query: 572 SGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
           S   I +  AH     +     N  TI++A +D+    W 
Sbjct: 569 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 87/220 (39%), Gaps = 19/220 (8%)
Query: 405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHEDEVLDIAFDY 462
           I T HS + +    + S    AS  + G  ++WD    T     T+      V DI++D 
Sbjct: 54  IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 113
Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI-AFDYSGSK---LATASS 518
              ++A     +        G V L  T   + N   +   + + D+  S+   + + S 
Sbjct: 114 ESKRIAAVGEGRERF-----GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168
Query: 519 DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQV 578
           D T  ++  G   +   TF  H+  V  V ++P G L  S   D T  L++   G    V
Sbjct: 169 DNTVAIFE-GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227
Query: 579 LK-------AHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
            +       AH   VF   ++ +G  I +AS D T  IW 
Sbjct: 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 113/270 (41%), Gaps = 32/270 (11%)
Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
           V S+++S D + L  G  +  + ++D++ Q   R                 + GH   + 
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR----------------TMAGHQARVG 180
Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMC-CFYTLKNHEDEVLDIAFDYSGSKLATASSD 473
            CL +++  +++S S  G     DVR       TL+ H  EV  +A+   G +LA+  +D
Sbjct: 181 -CL-SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238
Query: 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF-DYSGSKLATASS--DQTAKLWTVGGA 530
               +W    ++      +  +N  + V  +A+  +  + LAT     D+    W     
Sbjct: 239 NVVQIWDARSSIPK----FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294
Query: 531 VELLQTFYGHSNEVSKVSFHPTGKLVLS--GSQDTTCRLWS-TESGECIQV-LKAHEDDV 586
             +     G  ++V+ + + P  K ++S  G  D    +WS + SG   QV + AH+  V
Sbjct: 295 ARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRV 352
Query: 587 FSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
                + +G  + TA+ D     WR  + D
Sbjct: 353 LYSALSPDGRILSTAASDENLKFWRVYDGD 382

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 105/275 (38%), Gaps = 47/275 (17%)
Query: 173 FAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV 232
           F   + K   L  H  PLT + ++K G    + S D +  +W   +G  + T  GH   +
Sbjct: 18  FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
Query: 233 YAV---AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTG 289
           +++    F++   C+TGS D + KLWD+ +G  + T++     V  V FS P G+  L  
Sbjct: 78  WSIDVDCFTKY--CVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFS-PCGNYFL-A 132
Query: 290 SFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK 349
             D  +K                      +P          D         S + +H + 
Sbjct: 133 ILDNVMK----------------------NPGSINIYEIERDSATHELTKVSEEPIHKII 170
Query: 350 AHTG--PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT 407
            H G        +S+    +I G  D  I  +D+   +     Y +S           + 
Sbjct: 171 THEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----EYVDS-----------ID 215
Query: 408 GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM 442
            H + IS+  F+   +   +SS D  + L DV T+
Sbjct: 216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 133/326 (40%), Gaps = 40/326 (12%)
Query: 268 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTF-- 325
           GH+  +  V +++  GD + + S D +  +W S   E + T  GH+  + +S D   F  
Sbjct: 30  GHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI-WSIDVDCFTK 87
Query: 326 --CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLIT-----GSFDSSIVV 378
              + S D++ ++++ ++GQ + T K+   PV  ++FS   N  +           SI +
Sbjct: 88  YCVTGSADYSIKLWDVSNGQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NSMIASSSLDGTAKL 436
           ++I+     R++      + S +PIH +  H    +  +  +S     I +   DG    
Sbjct: 147 YEIE-----RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISK 201
Query: 437 WDVRTMCCFY-TLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHS 495
           +DV     +  ++  HE  + D+ F    +   T+S D  + L  V   +++L+ +    
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS-TLQVLKKY---- 256
Query: 496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE--LLQTFY------------GHS 541
            E    L+ A      +       Q AK  T   A E      FY            GH 
Sbjct: 257 -ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315
Query: 542 NEVSKVSFHPTGKLVLSGSQDTTCRL 567
             ++ V+  P G    SG +D   RL
Sbjct: 316 GPLNTVAISPQGTSYASGGEDGFIRL 341

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 104/271 (38%), Gaps = 48/271 (17%)
Query: 315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS 374
           +V ++ +     SCS D +A ++ + +G+ + TL  HTG + S+         +TGS D 
Sbjct: 37  QVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADY 96
Query: 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA 434
           SI +WD+       N    +T+++   P+ +      E S C   F   +       G+ 
Sbjct: 97  SIKLWDVS------NGQCVATWKS---PVPV---KRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494
            ++++      + L    +E +     + G   AT +       W+  G   +     GH
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG------WSTKGKYIIA----GH 194
Query: 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK 554
            +      D++ +Y                       E + +   H   +S + F P   
Sbjct: 195 KDGKISKYDVSNNY-----------------------EYVDSIDLHEKSISDMQFSPDLT 231
Query: 555 LVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
             ++ S+DT   L    +   +QVLK +E D
Sbjct: 232 YFITSSRDTNSFLVDVST---LQVLKKYETD 259

>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 524 LWTVGGAVELLQTFY--------GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
           L T  G +++L + +         H +E++K+ F P+G+ ++S SQD   ++WS + G  
Sbjct: 111 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
            + L  H   V        G  +++AS D T  +W 
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 524 LWTVGGAVELLQTFY--------GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
           L T  G +++L + +         H +E++K+ F P+G+ ++S SQD   ++WS + G  
Sbjct: 114 LGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
            + L  H   V        G  +++AS D T  +W 
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209

>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 435

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNS-M 424
           +  GS    I++W+    FG ++           KP  I   G    I+   FN  N+  
Sbjct: 135 VAVGSKGGDIMLWN----FGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
             +SS++GT +L D +         +    +   + D S S     + D   N+  +   
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239
Query: 485 VELLQTFYGHSNEVSKV-LDIAFDYSGSKLATASSDQTAKLW---TVGGAVELLQTFYGH 540
            + L     H  +V+ V L+   D+    LATAS DQT K+W    V G    L +   H
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PH 295
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587
            + V+   F P G  +L+  Q +  R++S    +C   L  H    F
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342

>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 436

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNS-M 424
           +  GS    I++W+    FG ++           KP  I   G    I+   FN  N+  
Sbjct: 135 VAVGSKGGDIMLWN----FGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQ 179
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
             +SS++GT +L D +         +    +   + D S S     + D   N+  +   
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 239
Query: 485 VELLQTFYGHSNEVSKV-LDIAFDYSGSKLATASSDQTAKLW---TVGGAVELLQTFYGH 540
            + L     H  +V+ V L+   D+    LATAS DQT K+W    V G    L +   H
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PH 295
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587
            + V+   F P G  +L+  Q +  R++S    +C   L  H    F
Sbjct: 296 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 342

>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex Length = 436

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 91/227 (40%), Gaps = 25/227 (11%)
Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNS-M 424
           +  GS    I++W+    FG ++           KP  I   G    I+   FN  N+  
Sbjct: 136 VAVGSKGGDIMLWN----FGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQ 180
Query: 425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA 484
             +SS++GT +L D +         +    +   + D S S     + D   N+  +   
Sbjct: 181 FYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD 240
Query: 485 VELLQTFYGHSNEVSKV-LDIAFDYSGSKLATASSDQTAKLW---TVGGAVELLQTFYGH 540
            + L     H  +V+ V L+   D+    LATAS DQT K+W    V G    L +   H
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWF---LATASVDQTVKIWDLRQVRGKASFLYSL-PH 296
Query: 541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF 587
            + V+   F P G  +L+  Q +  R++S    +C   L  H    F
Sbjct: 297 RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHF 343

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
           H + + D   DY G +LAT SSD+T  ++ V G   +L+ T  GH   V +V D A    
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 66
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQDTTCR 566
           G+ LA+ S D    +W    G    +     HS  V+ V + P   G L+L  S D    
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 567 LWS-TESGECIQ-VLKAHEDDVFSCGF---------NYNG----DTIITASKDNTCCIWR 611
           +    E+G     ++ AH   V S  +          +NG       +T   DN   IW+
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 115/289 (39%), Gaps = 29/289 (10%)
Query: 260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV- 316
           G  +     H  +++  A  + YG ++ T S DKT+K++    E  + I T  GH   V 
Sbjct: 1   GSMVVIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW 59
Query: 317 ---TFSPDQST-FCSCSMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLI 368
                 P   T   SCS D    I+   +G+  ++     H+  V S+Q++      +L+
Sbjct: 60  RVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLL 119
Query: 369 TGSFDSSIVVWDIQYQFGTR----NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM 424
             S D  + V + +    T     +A+A     AS  P  I     +E         +  
Sbjct: 120 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRK 174
Query: 425 IASSSLDGTAKLW----DVRTMCCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTAN 477
             +   D   K+W    D +T     TL+ H D V D+A+  +    S LA+ S D+T  
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 478 LWTVGGAVELLQTFYGHSNEVSKVL-DIAFDYSGSKLATASSDQTAKLW 525
           +WT        +       +   VL   ++  SG+ LA +  D    LW
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
           H + + D   DY G +LAT SSD+T  ++ V G   +L+ T  GH   V +V D A    
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 68
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQD 562
           G+ LA+ S D    +W    G    +     HS  V+ V + P   G L+L  S D
Sbjct: 69  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 105/314 (33%), Gaps = 42/314 (13%)
Query: 228 HQNVVYAVAFSEPYGCLTGSYDRTCKLWDI-----KSGHEICTYRGHQNVVYAVAFSEPY 282
           H  VV AV  S P   +        K+WDI     KS           N + +     P 
Sbjct: 50  HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL-LPD 108
Query: 283 GDKILTGSFDKTLKLW-ASAKEECIQTYRGHSAEVTF----SPDQSTFCSCSMDHTARIF 337
           G  ++ G    TL +W  +A    I+     SA   +    SPD     SC  D    ++
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDI----QYQFGTRNAYAE 393
           + ++   +   + HT     +  S+D   L TG  D+++  WD+    Q Q   ++ +  
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ---QHDFTS 225
Query: 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
             +   + P         E SN      N                       Y L  HE 
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-------------------YQLHLHES 266
Query: 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513
            VL + F Y G    +   D   N W       + Q     S E S VL          +
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-----SKESSSVLSCDISVDDKYI 321
Query: 514 ATASSDQTAKLWTV 527
            T S D+ A ++ V
Sbjct: 322 VTGSGDKKATVYEV 335

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
           L++ F GH++  S  +DI+ D  G+KL T   D T + W +    +L Q  +  ++++  
Sbjct: 175 LVRQFQGHTDGAS-CIDISND--GTKLWTGGLDNTVRSWDLREGRQLQQ--HDFTSQIFS 229
Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
           + + PTG+ +  G + +   +      +  Q L  HE  V S  F Y G   ++  KDN 
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNL 288
Query: 607 CCIWRS 612
              WR+
Sbjct: 289 LNAWRT 294

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 28/267 (10%)
Query: 282 YGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV----TFSPDQST-FCSCSMDHTA 334
           YG ++ T S DKT+K++    E  + I T  GH   V       P   T   SCS D   
Sbjct: 20  YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 335 RIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQFGTR-- 388
            I+   +G+  ++     H+  V S+Q++      ML+  S D  + V + +    T   
Sbjct: 80  MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139
Query: 389 --NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW----DVRTM 442
             +A+A     AS  P  I     +E         +    +   D   K+W    D +T 
Sbjct: 140 IIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 443 CCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVS 499
               TL+ H D V D+A+  +    S +A+ S D+T  +WT        +       +  
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 500 KVL-DIAFDYSGSKLATASSDQTAKLW 525
            VL   ++  SG+ LA +  D    LW
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 116/309 (37%), Gaps = 72/309 (23%)
Query: 325 FCSCSMDHTARIFNTNSGQEMH----TLKAHTGPVISLQFSSDR--NMLITGSFDSSIVV 378
             +CS D T +IF      E H    TL  H GPV  + ++  +   +L + S+D  +++
Sbjct: 24  MATCSSDKTIKIFEVEG--ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81
Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF--NFSNSMIASSSLDGTAKL 436
                       + E   R S   +H +  HS  +++  +  +    M+  +S DG   +
Sbjct: 82  ------------WKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 437 WDVRTMCCFYTLKNHEDEVLD---IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG 493
            + +       +      ++D   I  + +    AT   D   N     G  E       
Sbjct: 128 VEFKENGTTSPI------IIDAHAIGVNSASWAPATIEEDGEHN-----GTKE------- 169
Query: 494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE---LLQTFYGHSNEVSKVSFH 550
                             K  T  +D   K+W      +   L  T  GHS+ V  V++ 
Sbjct: 170 ----------------SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213
Query: 551 PTGKL---VLSGSQDTTCRLWS--TESGECIQVLKAHE---DDVFSCGFNYNGDTIITAS 602
           PT  L   + S SQD TC +W+   E G   + L   E   D ++   ++ +G+ +  + 
Sbjct: 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273
Query: 603 KDNTCCIWR 611
            DN   +W+
Sbjct: 274 GDNKVTLWK 282

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 501 VLDIAFDYSGSKLATASSDQTAKLWTVGG--AVELLQTFYGHSNEVSKVSF--HPTGKLV 556
           VLD+ +   GSK+ TAS D+TAK+W +    A+++ Q    H   V  + +   P    V
Sbjct: 89  VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ----HDAPVKTIHWIKAPNYSCV 144
Query: 557 LSGSQDTTCRLWSTESGECIQVLKAHE 583
           ++GS D T + W T S   + VL+  E
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQLPE 171

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 107/267 (40%), Gaps = 28/267 (10%)
Query: 282 YGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV----TFSPDQST-FCSCSMDHTA 334
           YG ++ T S DKT+K++    E  + I T  GH   V       P   T   SCS D   
Sbjct: 20  YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 335 RIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQFGTR-- 388
            I+   +G+  ++     H+  V S+Q++      +L+  S D  + V + +    T   
Sbjct: 80  LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 389 --NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW----DVRTM 442
             +A+A     AS  P  I     +E         +    +   D   K+W    D +T 
Sbjct: 140 IIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194
Query: 443 CCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVS 499
               TL+ H D V D+A+  +    S LA+ S D+T  +WT        +       +  
Sbjct: 195 VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254
Query: 500 KVL-DIAFDYSGSKLATASSDQTAKLW 525
            VL   ++  SG+ LA +  D    LW
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
           H + + D   DY G +LAT SSD+T  ++ V G   +L+ T  GH   V +V D A    
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 66
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQD 562
           G+ LA+ S D    +W    G    +     HS  V+ V + P   G L+L  S D
Sbjct: 67  GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 18/219 (8%)
Query: 271 NVVYAVAFSEPYGDKILTGSFDKTLKLW--ASAKEECIQTYRGHSAEVTFSPDQSTFCSC 328
           N V  +A+S   G+ I+TG  +  L+LW    A    +  +R     V ++ D +   S 
Sbjct: 109 NQVTCLAWSHD-GNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM 167
Query: 329 SMDHTARIFNTNSGQEMH--TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFG 386
            +++   ++N  SG  M    LK   G  I+ +  S    L     D   V  D     G
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL---GVDVEWVDDDKFVIPG 224
Query: 387 TRNAYAESTYRASHK-PIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW---DVRTM 442
            + A     Y+ + K P   L GH   IS   FN +N ++ S+S DGT ++W   +  + 
Sbjct: 225 PKGAIF--VYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ 282
Query: 443 CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV 481
            CFY    H   ++  ++     K+ + S D +  LW++
Sbjct: 283 NCFY---GHSQSIVSASW-VGDDKVISCSMDGSVRLWSL 317

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 28/213 (13%)
Query: 416 CL-FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
           CL ++   + I +   +G  +LW+ +T      L  H   ++ + ++  G+ + +   + 
Sbjct: 113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN 171
Query: 475 TANLWTV-GGAV----ELLQT------FYGHSNEVSKVLDI------AFDYSGSKLATAS 517
              LW V  G V    EL +T         HS + S  +D+       F   G K A   
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFV 231
Query: 518 SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ 577
              T K  T            GH   +S + F+ T KL+LS S D T R+W   +G    
Sbjct: 232 YQITEKTPT--------GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
               H   + S  +    D +I+ S D +  +W
Sbjct: 284 CFYGHSQSIVSASW-VGDDKVISCSMDGSVRLW 315

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 157/380 (41%), Gaps = 60/380 (15%)
Query: 227 GHQNVVYAVAFSEPYG-----CLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSE 280
           GH ++V+ V + + YG     C +  + +  KL    S  E+  ++R H + + A+ ++ 
Sbjct: 7   GHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 281 P-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT 339
           P YG  I + S+DKT+KLW    EE               PDQ     CS     R +N 
Sbjct: 66  PEYGRIIASASYDKTVKLW----EE--------------DPDQE---ECS----GRRWN- 99
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYR 397
               ++ TL    G + S++F+     L       D  + ++D       R+    S  +
Sbjct: 100 ----KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 155
Query: 398 ASHKPIHILTGHSQE---ISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHE 452
               P      H Q    +S C   FS   +A S+L+        +   +     L  H+
Sbjct: 156 VLSIPP---ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK 212
Query: 453 DEVLDIAFDYSGSK----LATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAF 506
             +  I++  S  +    +AT   D    ++ +   +  L  +    +SN      D+  
Sbjct: 213 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDM 272
Query: 507 DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566
           D  G   + +++++ A+L      VELL     H+ EV  VS++ TG ++ S   D   R
Sbjct: 273 DAQGR--SDSNTEEKAEL-QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 329
Query: 567 LW-STESGE--CIQVLKAHE 583
           LW +T S E  C+ V+ A +
Sbjct: 330 LWKATYSNEFKCMSVITAQQ 349

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 157/380 (41%), Gaps = 60/380 (15%)
Query: 227 GHQNVVYAVAFSEPYG-----CLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSE 280
           GH ++V+ V + + YG     C +  + +  KL    S  E+  ++R H + + A+ ++ 
Sbjct: 9   GHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 281 P-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT 339
           P YG  I + S+DKT+KLW    EE               PDQ     CS     R +N 
Sbjct: 68  PEYGRIIASASYDKTVKLW----EE--------------DPDQE---ECS----GRRWN- 101
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYR 397
               ++ TL    G + S++F+     L       D  + ++D       R+    S  +
Sbjct: 102 ----KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157
Query: 398 ASHKPIHILTGHSQE---ISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHE 452
               P      H Q    +S C   FS   +A S+L+        +   +     L  H+
Sbjct: 158 VLSIPP---ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK 214
Query: 453 DEVLDIAFDYSGSK----LATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAF 506
             +  I++  S  +    +AT   D    ++ +   +  L  +    +SN      D+  
Sbjct: 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDM 274
Query: 507 DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566
           D  G   + +++++ A+L      VELL     H+ EV  VS++ TG ++ S   D   R
Sbjct: 275 DAQGR--SDSNTEEKAEL-QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331
Query: 567 LW-STESGE--CIQVLKAHE 583
           LW +T S E  C+ V+ A +
Sbjct: 332 LWKATYSNEFKCMSVITAQQ 351

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 242 GCLTGSYDRTCKLWDIKSGHEI-----CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK 296
           G L  S     +LW++     +     C Y  H ++V  V+     G + ++GS D  +K
Sbjct: 95  GILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLS-SGTQAVSGSKDICIK 152
Query: 297 LWASAKEECIQTYRGHSAEVT---FSPDQ-STFCSCSMDHTARIFNTN 340
           +W  A++  + +YR H+A+VT    SP + S F SCS D+   +++T 
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 106/272 (38%), Gaps = 28/272 (10%)
Query: 277 AFSEPYGDKILTGSFDKTLKLWASAKE--ECIQTYRGHSAEV----TFSPDQST-FCSCS 329
           A  + YG +  T S DKT+K++    E  + I T  GH   V       P   T   SCS
Sbjct: 15  AVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 330 MDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQF 385
            D    I+   +G+  ++     H+  V S+Q++       L+  S D  + V + +   
Sbjct: 75  YDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENG 134
Query: 386 GTR----NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW---- 437
            T     +A+A     AS  P  I     +E         +    +   D   K+W    
Sbjct: 135 TTSPIIIDAHAIGVNSASWAPATI-----EEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 438 DVRTMCCFYTLKNHEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFYGH 494
           D +T     TL+ H D V D+A+  +    S  A+ S D+T  +WT        +     
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLK 249
Query: 495 SNEVSKVL-DIAFDYSGSKLATASSDQTAKLW 525
             +   VL   ++  SG+ LA +  D    LW
Sbjct: 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHSNEVSKVLDIAFDYS 509
           H + + D   DY G + AT SSD+T  ++ V G   +L+ T  GH   V +V D A    
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV-DWAHPKF 66
Query: 510 GSKLATASSDQTAKLWT-VGGAVELLQTFYGHSNEVSKVSFHPT--GKLVLSGSQD 562
           G+ LA+ S D    +W    G    +     HS  V+ V + P   G  +L  S D
Sbjct: 67  GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 156/380 (41%), Gaps = 60/380 (15%)
Query: 227 GHQNVVYAVAFSEPYG-----CLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSE 280
           GH ++V+ V + + YG     C +  + +  KL    S  E+  ++R H + + A+ ++ 
Sbjct: 9   GHDDLVHDVVY-DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 281 P-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT 339
           P YG  I + S+DKT+KLW    EE               PDQ     CS     R +N 
Sbjct: 68  PEYGRIIASASYDKTVKLW----EE--------------DPDQE---ECS----GRRWN- 101
Query: 340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYR 397
               ++ TL    G + S++F+     L       D  + ++D       R+    S  +
Sbjct: 102 ----KLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEXK 157
Query: 398 ASHKPIHILTGHSQE---ISNCLFNFSNSMIASSSLDGTAKLWDVR--TMCCFYTLKNHE 452
               P      H Q    +S C   FS   +A S+L+        +   +     L  H+
Sbjct: 158 VLSIPP---ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK 214
Query: 453 DEVLDIAFDYSGSK----LATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAF 506
             +  I++  S  +    +AT   D    ++ +   +  L  +    +SN      D+  
Sbjct: 215 SLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDX 274
Query: 507 DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCR 566
           D  G   + +++++ A+L      VELL     H+ EV  VS++ TG ++ S   D   R
Sbjct: 275 DAQGR--SDSNTEEKAEL-QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVR 331
Query: 567 LW-STESGE--CIQVLKAHE 583
           LW +T S E  C  V+ A +
Sbjct: 332 LWKATYSNEFKCXSVITAQQ 351

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 14/166 (8%)
Query: 224 TYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 281
           T+    + V  V FS   G   +T   DR    +D KSG  +      Q  V    F+  
Sbjct: 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260
Query: 282 YGD--KILTGSFDKTLKLWASAKEECIQTYR------GHSAEVTFSPDQSTFCSCSMDHT 333
           + D  K  T   D T+++W     +C+Q +       G+      +       S S+D T
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVW 379
              +     + + T+  H   + +L      N LI+GS+D  I+ W
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEW 362

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 14/166 (8%)
Query: 224 TYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP 281
           T+    + V  V FS   G   +T   DR    +D KSG  +      Q  V    F+  
Sbjct: 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 260
Query: 282 YGD--KILTGSFDKTLKLWASAKEECIQTYR------GHSAEVTFSPDQSTFCSCSMDHT 333
           + D  K  T   D T+++W     +C+Q +       G+      +       S S+D T
Sbjct: 261 WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 320
Query: 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVW 379
              +     + + T+  H   + +L      N LI+GS+D  I  W
Sbjct: 321 LNFYELGHDEVLKTISGHNKGITALTV----NPLISGSYDGRIXEW 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	616
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.98
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.97
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.96
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.95
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.94
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.91
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.88
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.88
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.83
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.81
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.66
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.64
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.64
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.62
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.57
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.55
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.54
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.52
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.51
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.47
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.46
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.42
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.42
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.41
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.41
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.41
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.4
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.39
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.37
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.36
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.28
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.2
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.16
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.14
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.12
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.1
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.07
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.07
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.06
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.03
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.03
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.01
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.98
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.96
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.94
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.94
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.93
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.91
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.85
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.85
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.84
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.83
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.79
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.76
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.67
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.65
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.64
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.64
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.63
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.6
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.59
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.51
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.48
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.47
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.45
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.43
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.41
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.4
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.39
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.38
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.38
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.33
3ott_A	758	Two-component system sensor histidine kinase; beta	98.32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.3
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.28
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.27
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.26
3ott_A	758	Two-component system sensor histidine kinase; beta	98.23
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.22
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.2
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.18
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.13
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.11
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.04
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.02
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.01
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.99
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.91
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.89
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.89
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.88
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.87
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.58
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.57
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.4
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.3
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.26
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.2
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.15
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.05
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.04
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.04
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.01
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.92
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.71
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.71
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.68
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.54
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.5
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.45
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.37
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.36
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.3
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.24
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.22
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.09
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.8
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.62
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.51
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.33
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.97
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.88
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.47
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.15
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.83
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	91.38
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	88.44
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.94
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	86.62
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	86.12

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.1e-58  Score=501.07  Aligned_cols=428  Identities=19%  Similarity=0.288  Sum_probs=354.9

Q ss_pred             hheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEE-EEECC----Cc
Q psy3640         179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAFSEPYGCL-TGSYD----RT  251 (616)
Q Consensus       179 ~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d----~~  251 (616)
                      ....+.+|...|++++|+|+|++||+|+.||+|+|||+.++  .....+.+|.++|.+++|+|+++.+ +++.+    +.
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~  130 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  130 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence            45778999999999999999999999999999999999754  3456788999999999999999966 55543    35


Q ss_pred             EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEE
Q psy3640         252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCS  327 (616)
Q Consensus       252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~  327 (616)
                      |++||  +++....+.+|...|.+++|+ |++. .|++++.|++|++||..++++...+.+|...   ++|+|++++|++
T Consensus       131 v~~wd--~~~~~~~l~gh~~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las  207 (611)
T 1nr0_A          131 VFLFD--TGTSNGNLTGQARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS  207 (611)
T ss_dssp             EEETT--TCCBCBCCCCCSSCEEEEEEC-SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EEEee--CCCCcceecCCCCCceEEEEC-CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE
Confidence            66666  677778889999999999999 5554 7999999999999999999999999888654   589999999999


Q ss_pred             EeCCCcEEEEECCCCceeEEee-------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc-----
Q psy3640         328 CSMDHTARIFNTNSGQEMHTLK-------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST-----  395 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-----  395 (616)
                      ++.|+.|++||+.+++....+.       +|.+.|.+++|+|++++|++++.|++|++||+..............     
T Consensus       208 ~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~  287 (611)
T 1nr0_A          208 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQ  287 (611)
T ss_dssp             EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCE
T ss_pred             EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcccee
Confidence            9999999999999999888884       7999999999999999999999999999999875322111000000     


Q ss_pred             ----------------------cccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe-e---
Q psy3640         396 ----------------------YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL-K---  449 (616)
Q Consensus       396 ----------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---  449 (616)
                                            ..........+.+|...|.+++|+|++++|++++.|+.|++||+.++.....+ .   
T Consensus       288 ~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~  367 (611)
T 1nr0_A          288 LGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA  367 (611)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred             EEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence                                  00112245567789999999999999999999999999999999876543321 0   


Q ss_pred             ------------------------------------------------------------------------------cC
Q psy3640         450 ------------------------------------------------------------------------------NH  451 (616)
Q Consensus       450 ------------------------------------------------------------------------------~~  451 (616)
                                                                                                    .+
T Consensus       368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~  447 (611)
T 1nr0_A          368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI  447 (611)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred             ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence                                                                                          02


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640         452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV  531 (616)
Q Consensus       452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  531 (616)
                      ...+.+++|+|+|++|++++.|++|++|++.+..........|.   ..|.+++|+|++++|++++.|+.|++|++.+..
T Consensus       448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~  524 (611)
T 1nr0_A          448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  524 (611)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC
Confidence            24577899999999999999999999999976532211123343   458899999999999999999999999997633


Q ss_pred             EEeEE--eeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe-ee-eEeccC-cccEEEEEEeeCCCEEEEeeCCCc
Q psy3640         532 ELLQT--FYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE-CI-QVLKAH-EDDVFSCGFNYNGDTIITASKDNT  606 (616)
Q Consensus       532 ~~~~~--~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~-~~-~~~~~h-~~~V~~l~~s~~~~~l~t~s~Dg~  606 (616)
                      +....  ..+|...|.+++|+|||++||+|+.|++|++|+++++. .+ ..+.+| .+.|.+++|+|+++ |++++.|++
T Consensus       525 ~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~  603 (611)
T 1nr0_A          525 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN  603 (611)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSC
T ss_pred             ceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCC
Confidence            44433  34499999999999999999999999999999998875 33 677899 89999999999998 999999999


Q ss_pred             EEEcccC
Q psy3640         607 CCIWRSM  613 (616)
Q Consensus       607 i~vW~~~  613 (616)
                      |++|++.
T Consensus       604 i~lW~~~  610 (611)
T 1nr0_A          604 IKFWNVP  610 (611)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            9999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.7e-58  Score=496.10  Aligned_cols=411  Identities=18%  Similarity=0.214  Sum_probs=350.6

Q ss_pred             ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCc-
Q psy3640         184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGH-  261 (616)
Q Consensus       184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~-  261 (616)
                      ..+.+.+.+++|+|+|++||+++ +++|++|++.+++....+.+|...|++++|+|+++++ +++.|++|+|||+.+++ 
T Consensus        15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~   93 (611)
T 1nr0_A           15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH   93 (611)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred             CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc
Confidence            35678899999999999999998 5699999999999999999999999999999999955 89999999999997654 


Q ss_pred             -eEEEeeCCCCcEEEEEEeCCCCCEEEEEECC----CeEEEEeCCCcceeEEeeecee---eEEEcCCCC-EEEEEeCCC
Q psy3640         262 -EICTYRGHQNVVYAVAFSEPYGDKILTGSFD----KTLKLWASAKEECIQTYRGHSA---EVTFSPDQS-TFCSCSMDH  332 (616)
Q Consensus       262 -~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~-~l~~~~~dg  332 (616)
                       ....+.+|.+.|.+++|+ |+++.|++++.+    +.|++||  .++....+.+|..   .++|+|++. .+++++.|+
T Consensus        94 ~~~~~~~~~~~~v~~v~fs-~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~  170 (611)
T 1nr0_A           94 ILKTTIPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDN  170 (611)
T ss_dssp             CEEEEEECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             eeeEeecccCCceEEEEEC-CCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCC
Confidence             456788999999999999 889999998875    4678887  4556666777765   458999987 699999999


Q ss_pred             cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe-----
Q psy3640         333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT-----  407 (616)
Q Consensus       333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  407 (616)
                      .|++||..+++....+.+|...|.+++|+|++++|++++.|++|++||+.                .......+.     
T Consensus       171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~----------------~g~~~~~~~~~~~~  234 (611)
T 1nr0_A          171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV----------------DGTKTGVFEDDSLK  234 (611)
T ss_dssp             CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TCCEEEECBCTTSS
T ss_pred             eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC----------------CCcEeeeecccccc
Confidence            99999999999999999999999999999999999999999999999987                444444442     


Q ss_pred             --cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE--------------------------------------
Q psy3640         408 --GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT--------------------------------------  447 (616)
Q Consensus       408 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------------------------  447 (616)
                        +|...|.+++|+|++++|++++.|++|++||+++++++..                                      
T Consensus       235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~  314 (611)
T 1nr0_A          235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG  314 (611)
T ss_dssp             SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred             ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence              7999999999999999999999999999999998765543                                      


Q ss_pred             -----eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc----------------------------
Q psy3640         448 -----LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH----------------------------  494 (616)
Q Consensus       448 -----~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------------  494 (616)
                           +.+|...|.+++|+|++++|++++.|++|++||+.++.........|                            
T Consensus       315 ~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~  394 (611)
T 1nr0_A          315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP  394 (611)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred             CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEee
Confidence                 34688899999999999999999999999999987542211000000                            


Q ss_pred             ---------------------------CC-----------------------CeeeEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640         495 ---------------------------SN-----------------------EVSKVLDIAFDYSGSKLATASSDQTAKL  524 (616)
Q Consensus       495 ---------------------------~~-----------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~v  524 (616)
                                                 ..                       ....+.+++|+|+|++|++|+.|+.|++
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~l  474 (611)
T 1nr0_A          395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV  474 (611)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEE
Confidence                                       00                       0123568999999999999999999999


Q ss_pred             EecCCceE-EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc-CeeeeE--eccCcccEEEEEEeeCCCEEEE
Q psy3640         525 WTVGGAVE-LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES-GECIQV--LKAHEDDVFSCGFNYNGDTIIT  600 (616)
Q Consensus       525 wd~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~-~~~~~~--~~~h~~~V~~l~~s~~~~~l~t  600 (616)
                      ||+.+... .... .+|...|++++|+|+|++|++++.|++|++|++.+ ++++..  +.+|...|.+++|+|||++||+
T Consensus       475 wd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~las  553 (611)
T 1nr0_A          475 YKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  553 (611)
T ss_dssp             EEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             EEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEE
Confidence            99977532 2333 78999999999999999999999999999999988 666654  3459999999999999999999


Q ss_pred             eeCCCcEEEcccCCC
Q psy3640         601 ASKDNTCCIWRSMNR  615 (616)
Q Consensus       601 ~s~Dg~i~vW~~~~~  615 (616)
                      ++.|++|++|++.+.
T Consensus       554 gs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          554 GSLDNSVIVWNMNKP  568 (611)
T ss_dssp             EETTSCEEEEETTCT
T ss_pred             EECCCcEEEEECCCc
Confidence            999999999999753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-57  Score=487.69  Aligned_cols=405  Identities=38%  Similarity=0.616  Sum_probs=340.7

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK  258 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~  258 (616)
                      .+.|+||.++|++++|||||++||+|+.|++|+||| .+++.++++.+|...|++++|+|++++| +++.|++|++||+ 
T Consensus         9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-   86 (577)
T 2ymu_A            9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-   86 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-
T ss_pred             eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-
Confidence            467999999999999999999999999999999999 4788999999999999999999999955 8999999999995 


Q ss_pred             CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC------------------------------------
Q psy3640         259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK------------------------------------  302 (616)
Q Consensus       259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~------------------------------------  302 (616)
                      +++.+..+.+|...|.+++|+ |+++++++++.|+.+++|+...                                    
T Consensus        87 ~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  165 (577)
T 2ymu_A           87 NGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  165 (577)
T ss_dssp             TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             CCCEEEEEECCCCCEEEEEEC-CCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceec
Confidence            577888888999999999888 6677776666666666554211                                    


Q ss_pred             ---------------------------------------------cceeEEeeecee---e-------------------
Q psy3640         303 ---------------------------------------------EECIQTYRGHSA---E-------------------  315 (616)
Q Consensus       303 ---------------------------------------------~~~~~~~~~~~~---~-------------------  315 (616)
                                                                   ++.+..+.+|..   .                   
T Consensus       166 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i  245 (577)
T 2ymu_A          166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  245 (577)
T ss_dssp             ECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             cccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence                                                         111111111111   1                   


Q ss_pred             ----------------------EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC
Q psy3640         316 ----------------------VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD  373 (616)
Q Consensus       316 ----------------------v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d  373 (616)
                                            ++|+|++..+++++.|+.|++||. +++....+.+|...|.+++|+|+++.+++++.|
T Consensus       246 ~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d  324 (577)
T 2ymu_A          246 KLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD  324 (577)
T ss_dssp             EEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence                                  234555555555555555555553 244556667899999999999999999999999


Q ss_pred             CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC
Q psy3640         374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED  453 (616)
Q Consensus       374 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  453 (616)
                      +.|++||.                 .......+.+|...+.+++|+|+++.+++++.||.+++||. +++.+..+..|..
T Consensus       325 ~~i~~w~~-----------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~  386 (577)
T 2ymu_A          325 KTVKLWNR-----------------NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS  386 (577)
T ss_dssp             SCEEEEET-----------------TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS
T ss_pred             CeEEEEeC-----------------CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC
Confidence            99999997                 44556778889999999999999999999999999999995 5678888999999


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE
Q psy3640         454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL  533 (616)
Q Consensus       454 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  533 (616)
                      .|.+++|+|++++|++++.|+.|++|+...  .....+..|..   .+.+++|+|++++|++++.|+.|++||...  +.
T Consensus       387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~---~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~  459 (577)
T 2ymu_A          387 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSS---SVWGVAFSPDDQTIASASDDKTVKLWNRNG--QL  459 (577)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSS---CEEEEEECTTSSEEEEEETTSEEEEEETTS--CE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCC---CeEEEEECCCCCEEEEEcCCCEEEEEECCC--CE
Confidence            999999999999999999999999999754  44555666654   478899999999999999999999999754  56


Q ss_pred             eEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         534 LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       534 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      +..+.+|..+|++++|+|++++|++++.|+.|++||. +++++..+.+|..+|++++|+|++++|++++.||.|++||..
T Consensus       460 ~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~  538 (577)
T 2ymu_A          460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  538 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence            7788899999999999999999999999999999995 789999999999999999999999999999999999999975


Q ss_pred             C
Q psy3640         614 N  614 (616)
Q Consensus       614 ~  614 (616)
                      .
T Consensus       539 ~  539 (577)
T 2ymu_A          539 G  539 (577)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.5e-55  Score=473.21  Aligned_cols=403  Identities=38%  Similarity=0.624  Sum_probs=365.6

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEe
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWD  256 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd  256 (616)
                      ........|...|.+++|+|+|++|++++.||.|++||. +++.+..+.+|...|.+++|+|++. +++++.|+.|++||
T Consensus       171 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~  249 (577)
T 2ymu_A          171 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN  249 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             eeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            345567789999999999999999999999999999995 6788889999999999999999998 55899999999999


Q ss_pred             CCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCc
Q psy3640         257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHT  333 (616)
Q Consensus       257 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~  333 (616)
                      . +++.+..+.+|...|.+++|+ |++..+++++.|+.+++|+. +++....+.+|...   ++++|++..+++++.|+.
T Consensus       250 ~-~~~~~~~~~~~~~~v~~v~~~-~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~  326 (577)
T 2ymu_A          250 R-NGQLLQTLTGHSSSVNGVAFR-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT  326 (577)
T ss_dssp             T-TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             C-CCCEEEEEecCCCCEEEEEEc-CCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCe
Confidence            5 567888999999999999999 88999999999999999996 45677777777654   589999999999999999


Q ss_pred             EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640         334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI  413 (616)
Q Consensus       334 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  413 (616)
                      |++||.. +..+..+..|...+.+++|+|+++++++++.|+.+++||.                 ....+..+.+|...|
T Consensus       327 i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-----------------~~~~~~~~~~~~~~v  388 (577)
T 2ymu_A          327 VKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----------------NGQLLQTLTGHSSSV  388 (577)
T ss_dssp             EEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-----------------TCCEEEEEECCSSCE
T ss_pred             EEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-----------------CCCEEEEecCCCCCe
Confidence            9999976 4566778889999999999999999999999999999996                 556777888999999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640         414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG  493 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  493 (616)
                      .+++|+|+++++++++.|+.|++||. +++.+..+..|...|.+++|+|++++|++++.|+.+++|+...  .....+.+
T Consensus       389 ~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~  465 (577)
T 2ymu_A          389 RGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTG  465 (577)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcC
Confidence            99999999999999999999999995 5678888999999999999999999999999999999999755  44555666


Q ss_pred             cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640         494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG  573 (616)
Q Consensus       494 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~  573 (616)
                      |..   .+.+++|+|++++|++++.|+.|++||...  +.+..+.+|...|++++|+|+|++|++++.||.|++||. ++
T Consensus       466 ~~~---~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~  539 (577)
T 2ymu_A          466 HSS---SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NG  539 (577)
T ss_dssp             CSS---CEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TS
T ss_pred             CCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CC
Confidence            654   478899999999999999999999999754  577788999999999999999999999999999999996 78


Q ss_pred             eeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       574 ~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      +++..+.+|.++|++++|+|||++|+|++.|++|++||
T Consensus       540 ~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          540 QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999999999999999999999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.6e-51  Score=446.90  Aligned_cols=410  Identities=18%  Similarity=0.250  Sum_probs=350.6

Q ss_pred             hhheecccCCcc-eEEEEECC--CCCEEEEEECCCcEEEEECCCC--------cEEEEEeccCCcEEEEEEcCCCCEE-E
Q psy3640         178 EKFKMLKSHLLP-LTNITFDK--FGTRCLTGSYDRTCKLWDIKSG--------HEICTYRGHQNVVYAVAFSEPYGCL-T  245 (616)
Q Consensus       178 ~~~~~l~~h~~~-i~~v~~s~--~g~~lasgs~dg~i~iwd~~~~--------~~~~~~~~h~~~I~~l~fs~~~~ll-s  245 (616)
                      +....+.+|..+ |++++|+|  +|++||+|+.||+|+|||+.++        +....+..|..+|.+++|+|+++++ +
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            355778999999 99999999  9999999999999999999855        6777888999999999999999965 6


Q ss_pred             EECC----CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECCCeEEEEeCCCcceeEEeeecee------
Q psy3640         246 GSYD----RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQTYRGHSA------  314 (616)
Q Consensus       246 ~s~d----~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------  314 (616)
                      ++.+    +.|++||  +++.+..+.+|...|.+++|+ |++. .+++++.|+.|++||+.+++.+..+.+|..      
T Consensus       134 ~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~  210 (615)
T 1pgu_A          134 VGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLK-QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR  210 (615)
T ss_dssp             EECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEEC-SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred             eccCCCCccEEEEEE--CCCcceeeecCCccEEEEEEC-CCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE
Confidence            6666    5778877  778889999999999999999 5565 899999999999999999999999987765      


Q ss_pred             eEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEe-e---cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcc
Q psy3640         315 EVTFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTL-K---AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRN  389 (616)
Q Consensus       315 ~v~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~---~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~  389 (616)
                      .++|+|+ ++++++++.||.|++||+.+++.+..+ .   .|...|.+++|+ +++++++++.|+.|++||++       
T Consensus       211 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~-------  282 (615)
T 1pgu_A          211 DVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT-------  282 (615)
T ss_dssp             EEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT-------
T ss_pred             EEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC-------
Confidence            4589999 999999999999999999999999998 6   899999999999 99999999999999999997       


Q ss_pred             cccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC--
Q psy3640         390 AYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS--  463 (616)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~--  463 (616)
                               .......+..+    ...+.++.++ ++..+++++.+|.|++||+.+++.+..+..|...|.+++| |+  
T Consensus       283 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~  351 (615)
T 1pgu_A          283 ---------TSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLI  351 (615)
T ss_dssp             ---------TTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTE
T ss_pred             ---------CCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcE
Confidence                     55666666655    4667777775 8899999999999999999998888888777766666665 43  


Q ss_pred             -------------------------------CCEEEEEeCCCcEEEEecCC-----------------------------
Q psy3640         464 -------------------------------GSKLATASSDQTANLWTVGG-----------------------------  483 (616)
Q Consensus       464 -------------------------------~~~l~~~~~dg~i~iwd~~~-----------------------------  483 (616)
                                                     +..+++++.|+.+++|++..                             
T Consensus       352 ~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  431 (615)
T 1pgu_A          352 SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI  431 (615)
T ss_dssp             EEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEE
T ss_pred             EECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEE
Confidence                                           44555555555555555432                             


Q ss_pred             ---------------------------------------------ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC
Q psy3640         484 ---------------------------------------------AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS  518 (616)
Q Consensus       484 ---------------------------------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  518 (616)
                                                                   .....   .........+.+++|+|++++|++++.
T Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~~~~~  508 (615)
T 1pgu_A          432 LQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF---DLKTPLRAKPSYISISPSETYIAAGDV  508 (615)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE---ECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccc---cccCCccCceEEEEECCCCCEEEEcCC
Confidence                                                         11000   112223456889999999999999999


Q ss_pred             CCcEEEEecCCceEEeEEeec-cccCEEEEEEec----------CCCEEEEEECCCcEEEecCCcC-eeeeEeccCcccE
Q psy3640         519 DQTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHP----------TGKLVLSGSQDTTCRLWSTESG-ECIQVLKAHEDDV  586 (616)
Q Consensus       519 dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~sp----------dg~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~V  586 (616)
                      ||.|++||+.+. +.+..+.+ |...|++++|+|          ++++|++++.||.|++||+.++ +++..+.+|.+.|
T Consensus       509 dg~i~iw~~~~~-~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v  587 (615)
T 1pgu_A          509 MGKILLYDLQSR-EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV  587 (615)
T ss_dssp             TSCEEEEETTTT-EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred             CCeEEEeeCCCC-cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce
Confidence            999999999885 55666777 999999999999          9999999999999999999998 7889999999999


Q ss_pred             EEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         587 FSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       587 ~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      ++++|+|+++ |++++.||+|++|++..
T Consensus       588 ~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          588 NNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             EEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             EEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            9999999999 99999999999999875

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.5e-52  Score=488.18  Aligned_cols=412  Identities=24%  Similarity=0.391  Sum_probs=354.1

Q ss_pred             eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCC
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKS  259 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~  259 (616)
                      ..+.+|...|++++|+|+|+++|+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++.++ +++.|++|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            3567999999999999999999999999999999999999999999999999999999999855 899999999999999


Q ss_pred             CceEEEeeCCCCcEEEEEEeCC-CCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEE
Q psy3640         260 GHEICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTAR  335 (616)
Q Consensus       260 ~~~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~  335 (616)
                      ++.+..+.+|...|.+++|++. ++..+++++.|+.|++||+.++++...+.+|...   ++|+|+++.+++++.||.|+
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~  768 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR  768 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEE
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEE
Confidence            9999999999999999999943 5668999999999999999999999999887755   48999999999999999999


Q ss_pred             EEECCCCceeEEee-------------------------------------------------------cCCcCEEEEEE
Q psy3640         336 IFNTNSGQEMHTLK-------------------------------------------------------AHTGPVISLQF  360 (616)
Q Consensus       336 i~d~~~~~~~~~~~-------------------------------------------------------~~~~~v~~l~~  360 (616)
                      +||+.+++....+.                                                       +|...|.+++|
T Consensus       769 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~  848 (1249)
T 3sfz_A          769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDF  848 (1249)
T ss_dssp             EEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEE
T ss_pred             EEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEE
Confidence            99988765443321                                                       57788999999


Q ss_pred             cCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE-------------------------
Q psy3640         361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN-------------------------  415 (616)
Q Consensus       361 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------------  415 (616)
                      +|+++++++++.||.|++||+.                .......+.+|...|.+                         
T Consensus       849 sp~~~~l~~~~~dg~v~vwd~~----------------~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          849 SPYDHLAVIALSQYCVELWNID----------------SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             CSSTTEEEEECSSSCEEEEETT----------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             cCCCCEEEEEeCCCeEEEEEcC----------------CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            9999999999999999999987                33334444444444444                         


Q ss_pred             ------------------------------------------------------EEEccCCCEEEEEeCCCcEEEEeCCC
Q psy3640         416 ------------------------------------------------------CLFNFSNSMIASSSLDGTAKLWDVRT  441 (616)
Q Consensus       416 ------------------------------------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~  441 (616)
                                                                            ++++|+++++++|+.+|.|++||+.+
T Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~  992 (1249)
T 3sfz_A          913 KVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN  992 (1249)
T ss_dssp             HHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT
T ss_pred             ccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC
Confidence                                                                  44555555555555555555555556


Q ss_pred             CeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCc
Q psy3640         442 MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQT  521 (616)
Q Consensus       442 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  521 (616)
                      +.....+.+|...|.+++|+|+++++++++.||.|++|++.++....  ...   ....+.+++++|++ .+++++.||.
T Consensus       993 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~--~~~---~~~~v~~~~~~~~~-~l~~~~~dg~ 1066 (1249)
T 3sfz_A          993 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF--LQA---HQETVKDFRLLQDS-RLLSWSFDGT 1066 (1249)
T ss_dssp             TSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC--CBC---CSSCEEEEEECSSS-EEEEEESSSE
T ss_pred             CceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE--Eec---CCCcEEEEEEcCCC-cEEEEECCCc
Confidence            66666777899999999999999999999999999999998864432  223   33458889999965 5788999999


Q ss_pred             EEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640         522 AKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA  601 (616)
Q Consensus       522 i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~  601 (616)
                      |++||+.++ .....+.+|.+.|++++|+|++++|++++.||+|++||+.+++++..+.+|.++|++++|+|++++|+++
T Consensus      1067 v~vwd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A         1067 VKVWNVITG-RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp             EEEEETTTT-CCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEE
T ss_pred             EEEEECCCC-ceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEE
Confidence            999999885 6677788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEcccCCC
Q psy3640         602 SKDNTCCIWRSMNR  615 (616)
Q Consensus       602 s~Dg~i~vW~~~~~  615 (616)
                      +.||+|++|++.+.
T Consensus      1146 ~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1146 DDNGEIRIWNVSDG 1159 (1249)
T ss_dssp             ETTSCCCEEESSSS
T ss_pred             eCCCEEEEEECCCC
Confidence            99999999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-52  Score=466.72  Aligned_cols=424  Identities=11%  Similarity=0.053  Sum_probs=331.8

Q ss_pred             cccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCc
Q psy3640         183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGH  261 (616)
Q Consensus       183 l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~  261 (616)
                      ..+|...|++++|+|+|++||+|+.||+|+||+..+.+....+ .|..+|.+++|+| ++ +++++.|++|++||+.+++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~   90 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK   90 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence            4589999999999999999999999999999999887766554 4888999999999 77 6799999999999999999


Q ss_pred             eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE-----------Eeeec---eeeEEEcCC-CCEEE
Q psy3640         262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-----------TYRGH---SAEVTFSPD-QSTFC  326 (616)
Q Consensus       262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----------~~~~~---~~~v~~~~~-~~~l~  326 (616)
                      .+..+. |...|++++|+ |+++++++|+.||.|++||+.+++...           .+.+|   ...++|+|+ +..++
T Consensus        91 ~~~~~~-~~~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           91 VLTTVF-VPGKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             EEEEEE-CSSCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             EEEEEc-CCCCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            998887 77899999999 899999999999999999999887531           11223   346799996 57899


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecC------------------CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCc
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLKAH------------------TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR  388 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~  388 (616)
                      +|+.||.| +||+++++.+..+..|                  ...|.+++|+|+|++|++|+.||.|++||++......
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            99999999 9999999988888765                  4779999999999999999999999999996532110


Q ss_pred             c------------------------ccccccc----ccC---------------CcceEEEe------------------
Q psy3640         389 N------------------------AYAESTY----RAS---------------HKPIHILT------------------  407 (616)
Q Consensus       389 ~------------------------~~~~~~~----~~~---------------~~~~~~~~------------------  407 (616)
                      .                        ....-..    .+.               ...+..+.                  
T Consensus       248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~  327 (902)
T 2oaj_A          248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY  327 (902)
T ss_dssp             EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred             EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence            0                        0000000    000               00111111                  


Q ss_pred             ------------cCccceeEEEEcc----------CCCEEEEEeCCCcEEEEeCCCCeEEEE-------e----------
Q psy3640         408 ------------GHSQEISNCLFNF----------SNSMIASSSLDGTAKLWDVRTMCCFYT-------L----------  448 (616)
Q Consensus       408 ------------~~~~~i~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~----------  448 (616)
                                  .+...+..+.+.+          +...+++++.||.|++||+.++.....       +          
T Consensus       328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~  407 (902)
T 2oaj_A          328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS  407 (902)
T ss_dssp             HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred             hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence                        1234455555543          334788888999999999877643321       1          


Q ss_pred             ------------------------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeee-eEEe-cc-----CCC
Q psy3640         449 ------------------------KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL-QTFY-GH-----SNE  497 (616)
Q Consensus       449 ------------------------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~-~~-----~~~  497 (616)
                                              .+|...+.+++|+|++++|++++.|++|++||+..+.... ..+. ..     ...
T Consensus       408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h  487 (902)
T 2oaj_A          408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK  487 (902)
T ss_dssp             EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred             EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence                                    2233334445567899999999999999999997752110 0010 00     123


Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce--------------------------------------------EE
Q psy3640         498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV--------------------------------------------EL  533 (616)
Q Consensus       498 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------------------------------------------~~  533 (616)
                      ...|.+++|+|++++||+|+.||.|++|++.+..                                            ++
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  567 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP  567 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence            3568999999999999999999999999986541                                            34


Q ss_pred             eEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeee-----Eec-cCcccEEEEEEe-----eCC---CEEE
Q psy3640         534 LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ-----VLK-AHEDDVFSCGFN-----YNG---DTII  599 (616)
Q Consensus       534 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~-----~~~-~h~~~V~~l~~s-----~~~---~~l~  599 (616)
                      +..+.+|.++|++++||||| +||+|+.|++|+|||++++..+.     .+. +|.+.|++++|+     |||   ++|+
T Consensus       568 ~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~  646 (902)
T 2oaj_A          568 STAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMV  646 (902)
T ss_dssp             EEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred             eEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence            67788899999999999999 99999999999999998887663     233 899999999999     885   8999


Q ss_pred             EeeCCCcEEEccc
Q psy3640         600 TASKDNTCCIWRS  612 (616)
Q Consensus       600 t~s~Dg~i~vW~~  612 (616)
                      +|+.|++|++|++
T Consensus       647 sgs~D~tv~~wd~  659 (902)
T 2oaj_A          647 CGTDMGEVITYKI  659 (902)
T ss_dssp             EEETTSEEEEEEE
T ss_pred             EEecCCcEEEEEE
Confidence            9999999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.1e-49  Score=432.25  Aligned_cols=407  Identities=15%  Similarity=0.206  Sum_probs=352.5

Q ss_pred             ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC----cEEEEEeccCCc-EEEEEEcC--CCCEE-EEECCCcEEEE
Q psy3640         184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG----HEICTYRGHQNV-VYAVAFSE--PYGCL-TGSYDRTCKLW  255 (616)
Q Consensus       184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~----~~~~~~~~h~~~-I~~l~fs~--~~~ll-s~s~d~~I~iw  255 (616)
                      ..|.+.|++++|+|+|++||+++ ++.|+|||+.++    +....+.+|... |++++|+|  +++++ +++.||.|++|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            46899999999999999999999 789999999999    899999999999 99999999  99855 88999999999


Q ss_pred             eCCCC--------ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECC----CeEEEEeCCCcceeEEeeeceee---EEEcC
Q psy3640         256 DIKSG--------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFD----KTLKLWASAKEECIQTYRGHSAE---VTFSP  320 (616)
Q Consensus       256 d~~~~--------~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~---v~~~~  320 (616)
                      |+.++        +....+..|...|.+++|+ |+++++++++.+    +.|.+||  .++.+..+.+|...   ++|+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~  170 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ  170 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence            99855        6778888999999999999 889999999988    6888888  66777777777654   58999


Q ss_pred             CCC-EEEEEeCCCcEEEEECCCCceeEEeecCCc---CEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640         321 DQS-TFCSCSMDHTARIFNTNSGQEMHTLKAHTG---PVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       321 ~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      +++ .+++++.|+.|++||+.+++.+..+..|..   .|.+++|+|+ ++++++++.||.|++||++             
T Consensus       171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-------------  237 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-------------  237 (615)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-------------
T ss_pred             CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-------------
Confidence            998 899999999999999999999999999999   9999999999 9999999999999999997             


Q ss_pred             cccCCcceEEE-e---cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEE
Q psy3640         396 YRASHKPIHIL-T---GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKL  467 (616)
Q Consensus       396 ~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l  467 (616)
                         ....+..+ .   .|...|.+++|+ ++.++++++.|+.|++||+++++.+..+..+    ...+.++.|+ ++.++
T Consensus       238 ---~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l  312 (615)
T 1pgu_A          238 ---SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRI  312 (615)
T ss_dssp             ---TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEE
T ss_pred             ---CCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeE
Confidence               66667777 5   899999999999 9999999999999999999999999988876    3678888886 88999


Q ss_pred             EEEeCCCcEEEEecCCceeeeeEEeccCCC------------------------------ee------------------
Q psy3640         468 ATASSDQTANLWTVGGAVELLQTFYGHSNE------------------------------VS------------------  499 (616)
Q Consensus       468 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------------~~------------------  499 (616)
                      ++++.||.+++||+..... ...+..|...                              ..                  
T Consensus       313 ~~~~~~g~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  391 (615)
T 1pgu_A          313 ISLSLDGTLNFYELGHDEV-LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW  391 (615)
T ss_dssp             EEEETTSCEEEEETTEEEE-EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred             EEEECCCCEEEEECCCCcE-EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence            9999999999999876422 2222222111                              01                  


Q ss_pred             --------------------------------------------------------eEEEEEEcCCCCEEEEEeC-CCcE
Q psy3640         500 --------------------------------------------------------KVLDIAFDYSGSKLATASS-DQTA  522 (616)
Q Consensus       500 --------------------------------------------------------~i~~~~~s~~~~~l~~~~~-dg~i  522 (616)
                                                                              .+.+++++  ++++++++. |+.|
T Consensus       392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i  469 (615)
T 1pgu_A          392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTI  469 (615)
T ss_dssp             TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCE
T ss_pred             CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeE
Confidence                                                                    12233333  566777777 8888


Q ss_pred             EEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc-CcccEEEEEEee--------
Q psy3640         523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA-HEDDVFSCGFNY--------  593 (616)
Q Consensus       523 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~V~~l~~s~--------  593 (616)
                      ++||+.+.......+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+.+ |...|++++|+|        
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  549 (615)
T 1pgu_A          470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  549 (615)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence            88888764222266778999999999999999999999999999999999999999988 999999999999        


Q ss_pred             --CCCEEEEeeCCCcEEEcccCCC
Q psy3640         594 --NGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       594 --~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                        ++++|++++.||.|++|++.+.
T Consensus       550 ~~~~~~l~~~~~dg~i~iw~~~~~  573 (615)
T 1pgu_A          550 EIEEDLVATGSLDTNIFIYSVKRP  573 (615)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCT
T ss_pred             ccCCCEEEEEcCCCcEEEEECCCC
Confidence              9999999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-50  Score=473.71  Aligned_cols=428  Identities=25%  Similarity=0.361  Sum_probs=368.5

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC---EEEEECCCcEEE
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG---CLTGSYDRTCKL  254 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~---lls~s~d~~I~i  254 (616)
                      +....+.+|..+|++++|+|+|++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++.   +++++.|+.|++
T Consensus       648 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~v  727 (1249)
T 3sfz_A          648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL  727 (1249)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEE
T ss_pred             CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999543   458999999999


Q ss_pred             EeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee------------------------
Q psy3640         255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR------------------------  310 (616)
Q Consensus       255 wd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------------------  310 (616)
                      ||+.+++.+..+.+|.+.|.+++|+ |+++.+++++.||.|++||+.+++....+.                        
T Consensus       728 wd~~~~~~~~~~~~h~~~v~~~~~s-p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  806 (1249)
T 3sfz_A          728 WDLNQKECRNTMFGHTNSVNHCRFS-PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW  806 (1249)
T ss_dssp             EETTSSSEEEEECCCSSCEEEEEEC-SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred             EECCCcchhheecCCCCCEEEEEEe-cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence            9999999999999999999999999 889999999999999999988775544331                        


Q ss_pred             -------------------------------ec---eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEE
Q psy3640         311 -------------------------------GH---SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVI  356 (616)
Q Consensus       311 -------------------------------~~---~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~  356 (616)
                                                     +|   ...++|+|++..+++++.+|.|++||+.++..+..+.+|...|.
T Consensus       807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~  886 (1249)
T 3sfz_A          807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH  886 (1249)
T ss_dssp             CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceE
Confidence                                           11   23457999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEecccccCCcccc---------------------------------------------
Q psy3640         357 SLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY---------------------------------------------  391 (616)
Q Consensus       357 ~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~---------------------------------------------  391 (616)
                      +++|+|+++.+++++.||.|++|++..........                                             
T Consensus       887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  966 (1249)
T 3sfz_A          887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC  966 (1249)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence            99999999999999999999999975321000000                                             


Q ss_pred             ----------c--------ccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC
Q psy3640         392 ----------A--------ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED  453 (616)
Q Consensus       392 ----------~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  453 (616)
                                .        .--..........+.+|...|.+++|+|+++++++++.||.|++||+.+++.. .+..|..
T Consensus       967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~ 1045 (1249)
T 3sfz_A          967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQE 1045 (1249)
T ss_dssp             EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE-CCBCCSS
T ss_pred             EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE-EEecCCC
Confidence                      0        00000133455666789999999999999999999999999999999999876 4557899


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE
Q psy3640         454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL  533 (616)
Q Consensus       454 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  533 (616)
                      .|.+++|+|++ .+++++.||.+++||+.++. ....+..|...   +.+++|+|+++++++++.|+.|++||+.+. ..
T Consensus      1046 ~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~---v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~-~~ 1119 (1249)
T 3sfz_A         1046 TVKDFRLLQDS-RLLSWSFDGTVKVWNVITGR-IERDFTCHQGT---VLSCAISSDATKFSSTSADKTAKIWSFDLL-SP 1119 (1249)
T ss_dssp             CEEEEEECSSS-EEEEEESSSEEEEEETTTTC-CCEEEECCSSC---CCCEEECSSSSSCEEECCSSCCCEECSSSS-SC
T ss_pred             cEEEEEEcCCC-cEEEEECCCcEEEEECCCCc-eeEEEcccCCc---EEEEEECCCCCEEEEEcCCCcEEEEECCCc-ce
Confidence            99999999965 67889999999999998763 44455555544   677899999999999999999999999874 56


Q ss_pred             eEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe---------ccCcccEEEEEEeeCCCEEEEeeCC
Q psy3640         534 LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL---------KAHEDDVFSCGFNYNGDTIITASKD  604 (616)
Q Consensus       534 ~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~---------~~h~~~V~~l~~s~~~~~l~t~s~D  604 (616)
                      ...+.+|.+.|++++|+|+|++|++|+.||.|++||+.+++.+..+         .+|.+.|++++|+|||++|++++  
T Consensus      1120 ~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-- 1197 (1249)
T 3sfz_A         1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG-- 1197 (1249)
T ss_dssp             SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--
T ss_pred             eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--
Confidence            6778899999999999999999999999999999999999988765         67999999999999999999886  


Q ss_pred             CcEEEcccCCC
Q psy3640         605 NTCCIWRSMNR  615 (616)
Q Consensus       605 g~i~vW~~~~~  615 (616)
                      |.|++||+.+.
T Consensus      1198 g~v~vwd~~~g 1208 (1249)
T 3sfz_A         1198 GYLKWWNVATG 1208 (1249)
T ss_dssp             SSEEEBCSSSC
T ss_pred             CeEEEEECCCC
Confidence            89999998764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-48  Score=435.36  Aligned_cols=422  Identities=14%  Similarity=0.145  Sum_probs=325.6

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceE
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEI  263 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~  263 (616)
                      .|..+|++++|+| |++||+++.|++|+|||+.+++.+..+. |...|++++|+|++.++ +|+.||+|++||+.+++..
T Consensus        56 ~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~  133 (902)
T 2oaj_A           56 EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS  133 (902)
T ss_dssp             SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc
Confidence            4788999999999 8899999999999999999999998886 77899999999999955 8999999999999998764


Q ss_pred             -----------EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--------------------
Q psy3640         264 -----------CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--------------------  312 (616)
Q Consensus       264 -----------~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------------  312 (616)
                                 ..+.+|.+.|.+++|+|.++..+++|+.||.| +||+++++++..+..+                    
T Consensus       134 ~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~  212 (902)
T 2oaj_A          134 SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTP  212 (902)
T ss_dssp             EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCC
T ss_pred             cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCC
Confidence                       23467999999999995566899999999999 9999999988888755                    


Q ss_pred             -eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--e---ec-------------CCcCEEEEEEc----CCC-CEEE
Q psy3640         313 -SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT--L---KA-------------HTGPVISLQFS----SDR-NMLI  368 (616)
Q Consensus       313 -~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~---~~-------------~~~~v~~l~~~----~~~-~~l~  368 (616)
                       ...++|+|++.+|++++.||.|++||+++++.+..  +   ..             |..+|.+++|+    |++ .+++
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~  292 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLI  292 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEE
Confidence             45678999999999999999999999999887654  2   11             34579999995    443 4677


Q ss_pred             EEECC-----CcEEEEecccc-----------------------cC--Ccc------------cc----cc---------
Q psy3640         369 TGSFD-----SSIVVWDIQYQ-----------------------FG--TRN------------AY----AE---------  393 (616)
Q Consensus       369 ~g~~d-----g~i~iwd~~~~-----------------------~~--~~~------------~~----~~---------  393 (616)
                      +|+.+     ..+.+|++...                       ..  ...            ..    ..         
T Consensus       293 sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~  372 (902)
T 2oaj_A          293 SHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILG  372 (902)
T ss_dssp             EEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEET
T ss_pred             eCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcC
Confidence            77665     37888874210                       00  000            00    00         


Q ss_pred             -c---ccc-cCCcc-----------------------------------------eEEEecCccceeEEEEccCCCEEEE
Q psy3640         394 -S---TYR-ASHKP-----------------------------------------IHILTGHSQEISNCLFNFSNSMIAS  427 (616)
Q Consensus       394 -~---~~~-~~~~~-----------------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~  427 (616)
                       .   ... ..+.+                                         ...+.+|...+..++|+|+++.+++
T Consensus       373 dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laS  452 (902)
T 2oaj_A          373 NGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFIT  452 (902)
T ss_dssp             TSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEE
T ss_pred             CCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEE
Confidence             0   000 00000                                         0012334444555667889999999


Q ss_pred             EeCCCcEEEEeCCCCeEE----EE--ee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-----------
Q psy3640         428 SSLDGTAKLWDVRTMCCF----YT--LK-----NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-----------  485 (616)
Q Consensus       428 ~~~dg~i~iwd~~~~~~~----~~--~~-----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------  485 (616)
                      |+.|++|++||+.++...    ..  +.     +|...|.+++|+|++++||+|+.||+|++|++.+..           
T Consensus       453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~  532 (902)
T 2oaj_A          453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG  532 (902)
T ss_dssp             EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred             ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence            999999999999876421    11  11     688899999999999999999999999999997542           


Q ss_pred             ---------------------------------eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceE
Q psy3640         486 ---------------------------------ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE  532 (616)
Q Consensus       486 ---------------------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  532 (616)
                                                       .....+.+|.   ..|.+++|+|+| +||+|+.|+.|++||+++...
T Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~---~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~  608 (902)
T 2oaj_A          533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK---GKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI  608 (902)
T ss_dssp             -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS---CSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred             ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC---CcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence                                             1123333443   458899999999 999999999999999987533


Q ss_pred             EeE----Eee-ccccCEEEEEEe-----cCC---CEEEEEECCCcEEEecC---CcCeeeeEeccCc-----ccEEEEE-
Q psy3640         533 LLQ----TFY-GHSNEVSKVSFH-----PTG---KLVLSGSQDTTCRLWST---ESGECIQVLKAHE-----DDVFSCG-  590 (616)
Q Consensus       533 ~~~----~~~-~h~~~v~~l~~s-----pdg---~~l~s~s~dg~i~iwd~---~~~~~~~~~~~h~-----~~V~~l~-  590 (616)
                      ...    .+. +|.+.|++++|+     |||   ++|++|+.|++|++||+   .+|+....+.+|.     ++|.+++ 
T Consensus       609 ~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~  688 (902)
T 2oaj_A          609 IYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDA  688 (902)
T ss_dssp             EEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEE
T ss_pred             EEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEe
Confidence            221    232 889999999999     885   89999999999999999   8999988888774     6777776 


Q ss_pred             Ee----------------------eCCCEEEEeeCCCcEEEcccCCC
Q psy3640         591 FN----------------------YNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       591 ~s----------------------~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      |+                      +++..|+++  +..|+||++.+.
T Consensus       689 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~  733 (902)
T 2oaj_A          689 FSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKS  733 (902)
T ss_dssp             EETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCC
T ss_pred             EecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccc
Confidence            66                      344444444  778999999763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.3e-49  Score=439.48  Aligned_cols=407  Identities=21%  Similarity=0.285  Sum_probs=352.7

Q ss_pred             hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640         177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLW  255 (616)
Q Consensus       177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw  255 (616)
                      +...+.+.+|..+|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|..+|.+++|+|++.+ ++++.||.|++|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             cccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence            3456889999999999999999999999999999999999999999999999999999999999984 589999999999


Q ss_pred             eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-ceeEEeeecee---eEEEcC-CCCEEEEEeC
Q psy3640         256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGHSA---EVTFSP-DQSTFCSCSM  330 (616)
Q Consensus       256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~---~v~~~~-~~~~l~~~~~  330 (616)
                      |+.+++.+..+.+|.+.|.+++|+ |++.++++++.||.|++||+.++ .....+.+|..   .++|+| ++..+++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999999 88999999999999999999987 66667766654   458999 8899999999


Q ss_pred             CCcEEEEECCCCceeEEeecCC-cCEEEEEEcC--CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640         331 DHTARIFNTNSGQEMHTLKAHT-GPVISLQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT  407 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (616)
                      ||.|++||+.++.....+..+. ..+.+++|+|  ++.++++++.||.|++||+.                .......+.
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----------------~~~~~~~~~  225 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----------------TKSCVATLE  225 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----------------TTEEEEEEE
T ss_pred             CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----------------CCcEEEEEc
Confidence            9999999999888877776655 8899999999  99999999999999999997                667788888


Q ss_pred             cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEecCCcee
Q psy3640         408 GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK-LATASSDQTANLWTVGGAVE  486 (616)
Q Consensus       408 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~~dg~i~iwd~~~~~~  486 (616)
                      +|...+.+++|+|++.++++++.||.|++||+.+++....+..+...+.+++|+|++.. +++++.++.+.+|++.....
T Consensus       226 ~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (814)
T 3mkq_A          226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP  305 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999873 24445566788888754322


Q ss_pred             eeeEE------e-c--------------------------------cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         487 LLQTF------Y-G--------------------------------HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV  527 (616)
Q Consensus       487 ~~~~~------~-~--------------------------------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  527 (616)
                      .....      . .                                .......+.+++|+|+|+++++++ ++.+.+|++
T Consensus       306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          306 TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEET
T ss_pred             eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEEC
Confidence            11100      0 0                                001112357899999999999998 899999998


Q ss_pred             CCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCC---CEEEEeeCC
Q psy3640         528 GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNG---DTIITASKD  604 (616)
Q Consensus       528 ~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~---~~l~t~s~D  604 (616)
                      .....      .+.+.+++++|+|+++++++++.+|.|++|+        .+.+|...+.+++|+|++   .+|++++.|
T Consensus       385 ~~~~~------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d  450 (814)
T 3mkq_A          385 LAWRN------KAFGKCQDFVWGPDSNSYALIDETGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSD  450 (814)
T ss_dssp             TTTEE------EEEEECSEEEECTTSSCEEEECTTCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEET
T ss_pred             ccccc------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecC
Confidence            65322      2346788999999999999999999999995        345677889999999998   689999999


Q ss_pred             CcEEEcccCCC
Q psy3640         605 NTCCIWRSMNR  615 (616)
Q Consensus       605 g~i~vW~~~~~  615 (616)
                      ++|++||+.+.
T Consensus       451 ~~v~~~d~~~~  461 (814)
T 3mkq_A          451 GFVYFFDWDNG  461 (814)
T ss_dssp             TEEEEECTTTC
T ss_pred             CEEEEEECCcC
Confidence            99999999764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.7e-46  Score=382.08  Aligned_cols=288  Identities=30%  Similarity=0.501  Sum_probs=272.9

Q ss_pred             hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEE
Q psy3640         177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLW  255 (616)
Q Consensus       177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iw  255 (616)
                      ......+.+|..+|++++|+|++++||+|+.||+|+|||+.+++....+.+|...|.+++|+|++.++ +++.|++|++|
T Consensus        98 ~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw  177 (410)
T 1vyh_C           98 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW  177 (410)
T ss_dssp             SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             CCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            34456789999999999999999999999999999999999999999999999999999999999855 99999999999


Q ss_pred             eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCC
Q psy3640         256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDH  332 (616)
Q Consensus       256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg  332 (616)
                      |+.+++.+..+.+|...|.+++|+ |+++++++|+.|++|++||+.++.++..+.+|...   ++++|++.++++++.|+
T Consensus       178 d~~~~~~~~~~~~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~  256 (410)
T 1vyh_C          178 DFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  256 (410)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             eCCCCceeEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC
Confidence            999999999999999999999999 88999999999999999999999999999888654   47999999999999999


Q ss_pred             cEEEEECCCCceeEEeecCCcCEEEEEEcCC--------------------CCEEEEEECCCcEEEEecccccCCccccc
Q psy3640         333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSD--------------------RNMLITGSFDSSIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  392 (616)
                      .|++||+.+++....+..|...|.+++|+|+                    +.+|++|+.|+.|++||++          
T Consensus       257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~----------  326 (410)
T 1vyh_C          257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----------  326 (410)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----------
T ss_pred             eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----------
Confidence            9999999999999999999999999999996                    6789999999999999998          


Q ss_pred             ccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640         393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS  472 (616)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  472 (616)
                            ...++..+.+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|++.+|++++.
T Consensus       327 ------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~  400 (410)
T 1vyh_C          327 ------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV  400 (410)
T ss_dssp             ------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred             ------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence                  77788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEec
Q psy3640         473 DQTANLWTV  481 (616)
Q Consensus       473 dg~i~iwd~  481 (616)
                      ||.|++|+.
T Consensus       401 D~~i~vW~~  409 (410)
T 1vyh_C          401 DQTVKVWEC  409 (410)
T ss_dssp             TSEEEEEC-
T ss_pred             CCcEEEEeC
Confidence            999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.8e-45  Score=411.23  Aligned_cols=394  Identities=17%  Similarity=0.227  Sum_probs=341.8

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEe
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWD  256 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd  256 (616)
                      .....+.+|..+|++++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++. +++++.||.|++||
T Consensus        46 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~  125 (814)
T 3mkq_A           46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN  125 (814)
T ss_dssp             EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEE
Confidence            34577889999999999999999999999999999999999999999999999999999999998 55899999999999


Q ss_pred             CCCC-ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec----eeeEEEcC--CCCEEEEEe
Q psy3640         257 IKSG-HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH----SAEVTFSP--DQSTFCSCS  329 (616)
Q Consensus       257 ~~~~-~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~--~~~~l~~~~  329 (616)
                      +.++ .....+.+|...|.+++|+|.+++.+++++.||.|++||+.+++....+..+    ...++|+|  ++..+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            9987 6778889999999999999448899999999999999999988887777643    34568998  999999999


Q ss_pred             CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                      .||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.                .......+..+
T Consensus       206 ~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~----------------~~~~~~~~~~~  269 (814)
T 3mkq_A          206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS----------------TYKVEKTLNVG  269 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----------------TCSEEEEECCS
T ss_pred             CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC----------------CCcEEEEeecC
Confidence            99999999999999999999999999999999999999999999999999997                67788888899


Q ss_pred             ccceeEEEEccCCC--EEEEEeCCCcEEEEeCCCCeEEEE----------------------------------------
Q psy3640         410 SQEISNCLFNFSNS--MIASSSLDGTAKLWDVRTMCCFYT----------------------------------------  447 (616)
Q Consensus       410 ~~~i~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------  447 (616)
                      ...+.+++|+|++.  ++++++ ++.+.+|++........                                        
T Consensus       270 ~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (814)
T 3mkq_A          270 LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQ  348 (814)
T ss_dssp             SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCC
T ss_pred             CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceee
Confidence            99999999999987  455544 66788888754322111                                        


Q ss_pred             ---eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640         448 ---LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL  524 (616)
Q Consensus       448 ---~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  524 (616)
                         +..+...+.+++|+|+|+++++++ ++.+.+|++.......         ...+.+++|+|+++++++++.+|.+++
T Consensus       349 ~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~---------~~~i~~~~~spdg~~la~~~~~g~v~l  418 (814)
T 3mkq_A          349 TKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA---------FGKCQDFVWGPDSNSYALIDETGQIKY  418 (814)
T ss_dssp             CEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE---------EEECSEEEECTTSSCEEEECTTCCEEE
T ss_pred             eecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC---------CCceEEEEEeCCCCeEEEEeCCCcEEE
Confidence               122344678999999999999998 8999999986542211         234668999999999999999999999


Q ss_pred             EecCCceEEeEEeeccccCEEEEEEecCC---CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640         525 WTVGGAVELLQTFYGHSNEVSKVSFHPTG---KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA  601 (616)
Q Consensus       525 wd~~~~~~~~~~~~~h~~~v~~l~~spdg---~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~  601 (616)
                      |+.         +.+|...+.+++|+|++   ++|++++.|+.|++||+.+++.+..+..|..   .++|+|+|++|+++
T Consensus       419 ~~~---------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~  486 (814)
T 3mkq_A          419 YKN---------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIV  486 (814)
T ss_dssp             EET---------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEE
T ss_pred             EEC---------CCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEE
Confidence            963         35688889999999998   6899999999999999999999999988875   89999999999999


Q ss_pred             ------eCCCcEEEc
Q psy3640         602 ------SKDNTCCIW  610 (616)
Q Consensus       602 ------s~Dg~i~vW  610 (616)
                            +.++.+.+|
T Consensus       487 ~~~~~~~~~~~~~~~  501 (814)
T 3mkq_A          487 NTNSNGDEASGYTLL  501 (814)
T ss_dssp             ECCCSSCSCSEEEEE
T ss_pred             EcCcccCCceEEEEE
Confidence                  666655555

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=358.81  Aligned_cols=286  Identities=27%  Similarity=0.454  Sum_probs=265.9

Q ss_pred             hheecccCCcceEEEEECCC----CCEEEEEECCCcEEEEECCCCcE--EEEEeccCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640         179 KFKMLKSHLLPLTNITFDKF----GTRCLTGSYDRTCKLWDIKSGHE--ICTYRGHQNVVYAVAFSEPYGCL-TGSYDRT  251 (616)
Q Consensus       179 ~~~~l~~h~~~i~~v~~s~~----g~~lasgs~dg~i~iwd~~~~~~--~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~  251 (616)
                      .++.+++|.++|++++|+|+    +.+||+|+.|++|+|||+.+++.  ...+.+|...|.+++|++++.++ +++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            45778899999999999985    67999999999999999987754  44688999999999999999855 8999999


Q ss_pred             EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEE
Q psy3640         252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSC  328 (616)
Q Consensus       252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~  328 (616)
                      |++||+.+++.+..+..|...+.+++|+ |+++++++++.|+.+++|++.+++....+..+..   .++|+|++++++++
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999999 8999999999999999999999998888876644   56899999999999


Q ss_pred             eCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640         329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG  408 (616)
Q Consensus       329 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (616)
                      +.||.|++||+++++.+..+.+|..+|.+++|+|++++|++|+.|+.|++||++                .......+.+
T Consensus       183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~----------------~~~~~~~~~~  246 (321)
T 3ow8_A          183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----------------HANLAGTLSG  246 (321)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT----------------TCCEEEEECC
T ss_pred             cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC----------------CcceeEEEcC
Confidence            999999999999999999999999999999999999999999999999999997                6677788899


Q ss_pred             CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         409 HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV  481 (616)
Q Consensus       409 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  481 (616)
                      |...|.+++|+|++.+|++++.|+.|++||+++++++..+..|...|.+++|+|++++|++++.||.|++||.
T Consensus       247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=7.9e-45  Score=363.49  Aligned_cols=286  Identities=20%  Similarity=0.350  Sum_probs=261.5

Q ss_pred             hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEE
Q psy3640         177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLW  255 (616)
Q Consensus       177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iw  255 (616)
                      ....+.+++|..+|++++|+|+|++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++.++ +++.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            34567799999999999999999999999999999999999999999999999999999999999955 89999999999


Q ss_pred             eCCCC----ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEE
Q psy3640         256 DIKSG----HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSC  328 (616)
Q Consensus       256 d~~~~----~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~  328 (616)
                      |+.++    +....+.+|.+.|.++.|+ ++ ..+++++.|++|++||+.+++.+..+.+|...   ++|+|++.++++|
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~-~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFL-DD-NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEE-ET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEEC-CC-CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            99876    3566788999999999998 44 45999999999999999999999999877654   5899999999999


Q ss_pred             eCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640         329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG  408 (616)
Q Consensus       329 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (616)
                      +.||.|++||+++++....+.+|...|.+++|+|++++|++|+.||+|++||++                ....+..+..
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~----------------~~~~~~~~~~  266 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR----------------ADQELMTYSH  266 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEEEECC
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC----------------CCcEEEEEcc
Confidence            999999999999999999999999999999999999999999999999999997                4444444332


Q ss_pred             --CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640         409 --HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT  480 (616)
Q Consensus       409 --~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  480 (616)
                        +...|.+++|+|+++++++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus       267 ~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence              335799999999999999999999999999999999999999999999999999999999999999999997

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-44  Score=371.30  Aligned_cols=306  Identities=28%  Similarity=0.453  Sum_probs=273.5

Q ss_pred             EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECC
Q psy3640         264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTN  340 (616)
Q Consensus       264 ~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~  340 (616)
                      ..+.+|.++|++++|+ |++.++++|+.||+|++||+.+++....+.+|...   ++|+|+++++++|+.|+.|++||+.
T Consensus       102 ~~l~gh~~~V~~~~~~-p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             CEEECCSSCEEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             EeecccCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            5678999999999999 88999999999999999999999999999988755   4899999999999999999999999


Q ss_pred             CCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640         341 SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF  420 (616)
Q Consensus       341 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  420 (616)
                      +++.+..+.+|...|.+++|+|++++|++|+.|++|++||++                ....+..+.+|...+.++.+++
T Consensus       181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~----------------~~~~~~~~~~h~~~v~~~~~~~  244 (410)
T 1vyh_C          181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----------------TGYCVKTFTGHREWVRMVRPNQ  244 (410)
T ss_dssp             SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----------------TCCEEEEEECCSSCEEEEEECT
T ss_pred             CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----------------CCcEEEEEeCCCccEEEEEECC
Confidence            999999999999999999999999999999999999999998                6778888999999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeee
Q psy3640         421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK  500 (616)
Q Consensus       421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  500 (616)
                      ++.++++|+.|+.|++||++++.+...+..|...|.+++|+|++.+.......+.                         
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-------------------------  299 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-------------------------  299 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSC-------------------------
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccc-------------------------
Confidence            9999999999999999999999999999999999999999997643211100000                         


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec
Q psy3640         501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK  580 (616)
Q Consensus       501 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~  580 (616)
                       ........+.++++|+.|+.|++||+.++ ..+..+.+|...|++++|+|+|++|++|+.||.|++||+.+++++..+.
T Consensus       300 -~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          300 -ETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             -C-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             -cccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence             00122345789999999999999999885 6777889999999999999999999999999999999999999999999


Q ss_pred             cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         581 AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       581 ~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      +|...|++++|+|++.+|++|+.||+|++|++.
T Consensus       378 ~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          378 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999999999999999863

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.1e-44  Score=356.82  Aligned_cols=288  Identities=24%  Similarity=0.425  Sum_probs=261.6

Q ss_pred             EEEeeCCCCcEEEEEEeCC---CCCEEEEEECCCeEEEEeCCCcce--eEEeeeceee---EEEcCCCCEEEEEeCCCcE
Q psy3640         263 ICTYRGHQNVVYAVAFSEP---YGDKILTGSFDKTLKLWASAKEEC--IQTYRGHSAE---VTFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       263 ~~~~~~h~~~V~~l~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i  334 (616)
                      ...+.+|.+.|++++|++.   ++..|++|+.|++|++|++..++.  ...+.+|...   +++++++..+++++.|+.|
T Consensus        25 ~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i  104 (321)
T 3ow8_A           25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI  104 (321)
T ss_dssp             EEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred             eeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence            3566789999999999842   467999999999999999887654  4456777654   4799999999999999999


Q ss_pred             EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                      ++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++|+++                .......+..+...+.
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~----------------~~~~~~~~~~~~~~v~  168 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE----------------SGKKEYSLDTRGKFIL  168 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT----------------TCSEEEEEECSSSCEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC----------------CCceeEEecCCCceEE
Confidence            999999999999999999999999999999999999999999999998                6667778888999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc
Q psy3640         415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH  494 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  494 (616)
                      +++|+|++++|++|+.||.|++||+++++.+..+.+|..+|.+++|+|++++|++++.|+.|++||+...          
T Consensus       169 ~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~----------  238 (321)
T 3ow8_A          169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA----------  238 (321)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC----------
T ss_pred             EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999998653          


Q ss_pred             CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640         495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE  574 (616)
Q Consensus       495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~  574 (616)
                                                           .....+.+|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus       239 -------------------------------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          239 -------------------------------------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             -------------------------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             -------------------------------------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence                                                 3344567899999999999999999999999999999999999


Q ss_pred             eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         575 CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       575 ~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      ++..+.+|.+.|.+++|+|++++|++++.||+|++||+.
T Consensus       282 ~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          282 CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3e-43  Score=353.73  Aligned_cols=286  Identities=23%  Similarity=0.358  Sum_probs=260.5

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEe
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWD  256 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd  256 (616)
                      ...+.+++|..+|++++|+|++++||+|+.||+|+|||..+++....+..|...|.+++|+|++.++ +++.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            3457789999999999999999999999999999999999999999999999999999999999955 899999999999


Q ss_pred             CCCC------ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE---EEcC--CCCEE
Q psy3640         257 IKSG------HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSP--DQSTF  325 (616)
Q Consensus       257 ~~~~------~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~--~~~~l  325 (616)
                      +...      .....+.+|.+.|.+++|+ +++..+++++.|++|++||+++++++..+.+|...+   +++|  +++.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            8654      3456778899999999999 889999999999999999999999999999887644   6766  57899


Q ss_pred             EEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         326 CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       326 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      ++|+.||.|++||+++++.+..+..|...|.+++|+|++++|++|+.|++|++||++                .......
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~----------------~~~~~~~  277 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR----------------ADREVAI  277 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC----------------CCcEEEE
Confidence            999999999999999999999999999999999999999999999999999999997                3334444


Q ss_pred             EecC--ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640         406 LTGH--SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT  480 (616)
Q Consensus       406 ~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  480 (616)
                      +..+  ...+.+++|+|++.++++|+.|+.|++||+.++..+..+.+|...|.+++|+|++++|++++.|++|++|+
T Consensus       278 ~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          278 YSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            4332  34688999999999999999999999999999999999999999999999999999999999999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.2e-43  Score=349.75  Aligned_cols=288  Identities=27%  Similarity=0.460  Sum_probs=259.5

Q ss_pred             ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEE
Q psy3640         261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIF  337 (616)
Q Consensus       261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~  337 (616)
                      +....+.+|.+.|++++|+ +++++|++++.||+|++||..+++.+..+..+...   ++|+|+++++++++.|+.+++|
T Consensus        46 ~~~~~l~gH~~~v~~~~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             hhheeecCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3457889999999999999 88999999999999999999999999888877654   5899999999999999999999


Q ss_pred             ECCCC----ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640         338 NTNSG----QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI  413 (616)
Q Consensus       338 d~~~~----~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  413 (616)
                      ++.++    .....+.+|.+.|.++.|++++ .+++++.|+.|++||+.                .......+.+|...|
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~----------------~~~~~~~~~~h~~~v  187 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE----------------TGQQTTTFTGHTGDV  187 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETT----------------TTEEEEEECCCSSCE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECC----------------CCcEEEEEcCCCCce
Confidence            99875    3566778999999999999876 48999999999999997                677788889999999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640         414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG  493 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  493 (616)
                      .+++|+|++.++++|+.|+.|++||++++.+...+.+|...|.+++|+|++++|++++.||.|++||+........    
T Consensus       188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~----  263 (340)
T 1got_B          188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT----  263 (340)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE----
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999876421100    


Q ss_pred             cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640         494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG  573 (616)
Q Consensus       494 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~  573 (616)
                                                               .....+...|++++|+|+|++|++|+.||.|++||+.++
T Consensus       264 -----------------------------------------~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          264 -----------------------------------------YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             -----------------------------------------ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             -----------------------------------------EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC
Confidence                                                     001123457999999999999999999999999999999


Q ss_pred             eeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         574 ECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       574 ~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      +.+..+.+|.++|.+++|+|++.+|+||+.||+|++||
T Consensus       303 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999999999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=4.7e-43  Score=344.78  Aligned_cols=289  Identities=26%  Similarity=0.396  Sum_probs=260.2

Q ss_pred             hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640         177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLW  255 (616)
Q Consensus       177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw  255 (616)
                      ++..+++++|.++|++++|+|+|++||+|+.||+|++||+.++..+..+..|..+|.+++|+|++.+ ++++.|++|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             ceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            3456789999999999999999999999999999999999999999999999999999999999985 599999999999


Q ss_pred             eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-ceeEEeeecee---eEEEcC-CCCEEEEEeC
Q psy3640         256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGHSA---EVTFSP-DQSTFCSCSM  330 (616)
Q Consensus       256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~---~v~~~~-~~~~l~~~~~  330 (616)
                      |+.+++.+..+.+|.+.|.+++|+ |++.++++|+.|++|++||++++ .....+.+|..   .++|+| ++..+++|+.
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            999999999999999999999999 88999999999999999999987 44566777764   458999 6789999999


Q ss_pred             CCcEEEEECCCCceeEEee-cCCcCEEEEEEcC--CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640         331 DHTARIFNTNSGQEMHTLK-AHTGPVISLQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT  407 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (616)
                      |+.|++||+.++.....+. .|...+..+.|+|  ++.+|++|+.|++|++||++                ....+..+.
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~----------------~~~~~~~~~  225 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----------------TKSCVATLE  225 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT----------------TTEEEEEEE
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC----------------CCccceeeC
Confidence            9999999998887666554 4668899999987  67899999999999999998                777888999


Q ss_pred             cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEecCC
Q psy3640         408 GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS--KLATASSDQTANLWTVGG  483 (616)
Q Consensus       408 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~--~l~~~~~dg~i~iwd~~~  483 (616)
                      +|...|..++|+|++.+|++|+.||.|++||+++++....+..+...+.+++++|++.  ++++++.| .+.+|++..
T Consensus       226 ~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~  302 (304)
T 2ynn_A          226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN  302 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred             CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence            9999999999999999999999999999999999999999999999999999999875  46766655 577777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-43  Score=362.22  Aligned_cols=337  Identities=19%  Similarity=0.256  Sum_probs=288.3

Q ss_pred             cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeC----CCCc------eEEEeeC---------
Q psy3640         210 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDI----KSGH------EICTYRG---------  268 (616)
Q Consensus       210 ~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~----~~~~------~~~~~~~---------  268 (616)
                      .+.+|+++..........|.++|.+++|+|++. ++ +++.|+.|++||+    .+++      ....+..         
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            456788877777767777889999999999998 55 8899999999999    8888      4555554         


Q ss_pred             -CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy3640         269 -HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQE  344 (616)
Q Consensus       269 -h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~  344 (616)
                       |.+.|.+++|+ |++++|++++.||.|++|| .+++.+..+..|..   .++|+|+++++++++.||.|++||+.+++.
T Consensus       106 ~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          106 KTTNQVTCLAWS-HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             --CBCEEEEEEC-TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             CCCCceEEEEEc-CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence             68899999999 7899999999999999999 67778888876654   458999999999999999999999999999


Q ss_pred             eEEeecCCcC---------------EEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         345 MHTLKAHTGP---------------VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       345 ~~~~~~~~~~---------------v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                      +..+..+...               +.+++|+|++ .+++++.+|.|++||++                .......+..|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~----------------~~~~~~~~~~~  246 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQIT----------------EKTPTGKLIGH  246 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETT----------------CSSCSEEECCC
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcC----------------CCceeeeeccC
Confidence            9998887776               8999999874 68899999999999998                66777788899


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640         410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ  489 (616)
Q Consensus       410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  489 (616)
                      ...+.+++|+|+++++++++.||.|++||+++++....+..|...|.+++|+|++ .+++++.|+.+++||+...     
T Consensus       247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-----  320 (425)
T 1r5m_A          247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN-----  320 (425)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT-----
T ss_pred             CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC-----
Confidence            9999999999999999999999999999999999888898899999999999998 9999999999999988653     


Q ss_pred             EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640         490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS  569 (616)
Q Consensus       490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd  569 (616)
                                                                .....+..|...|++++|+|++++|++++.||.|++||
T Consensus       321 ------------------------------------------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          321 ------------------------------------------TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             ------------------------------------------EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ------------------------------------------cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence                                                      33445567888999999999999999999999999999


Q ss_pred             CCcCe--------------------eeeEeccCcc--cEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         570 TESGE--------------------CIQVLKAHED--DVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       570 ~~~~~--------------------~~~~~~~h~~--~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      +.+++                    .+..+.+|..  .|.+++|+|++++|++++.||.|++|++.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99988                    8999999976  99999999999999999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-43  Score=359.62  Aligned_cols=341  Identities=18%  Similarity=0.298  Sum_probs=289.3

Q ss_pred             ccCCcceEEEEECCCCC-EEEEEECCCcEEEEEC----CCCc------EEEEEec----------cCCcEEEEEEcCCCC
Q psy3640         184 KSHLLPLTNITFDKFGT-RCLTGSYDRTCKLWDI----KSGH------EICTYRG----------HQNVVYAVAFSEPYG  242 (616)
Q Consensus       184 ~~h~~~i~~v~~s~~g~-~lasgs~dg~i~iwd~----~~~~------~~~~~~~----------h~~~I~~l~fs~~~~  242 (616)
                      ..|..+|++++|+|+|+ +||+|+.||.|++||+    .+++      ....+..          |...|++++|+|++.
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            34669999999999999 9999999999999999    8888      5666654          788999999999998


Q ss_pred             EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee-------
Q psy3640         243 CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA-------  314 (616)
Q Consensus       243 ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-------  314 (616)
                      ++ +++.|+.|++|| .+++.+..+.+|...|.+++|+ ++++++++++.|+.|++||+.+++.+..+..+..       
T Consensus       122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  199 (425)
T 1r5m_A          122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA  199 (425)
T ss_dssp             EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------
T ss_pred             EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceee
Confidence            55 889999999999 7788889999999999999999 8899999999999999999999998888765543       


Q ss_pred             -----------eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEeccc
Q psy3640         315 -----------EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY  383 (616)
Q Consensus       315 -----------~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~  383 (616)
                                 .++|+|+ ..+++++.+|.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++ 
T Consensus       200 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-  277 (425)
T 1r5m_A          200 ENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG-  277 (425)
T ss_dssp             ------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-
T ss_pred             ccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-
Confidence                       3478887 568899999999999999999999999999999999999999999999999999999998 


Q ss_pred             ccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640         384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS  463 (616)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  463 (616)
                                     .......+..|...+.+++|+|++ .+++++.|+.|++||+++++.+..+..|...|.+++|+|+
T Consensus       278 ---------------~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          278 ---------------NGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             ---------------SBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred             ---------------CCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence                           666777888899999999999999 9999999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecccc-
Q psy3640         464 GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN-  542 (616)
Q Consensus       464 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~-  542 (616)
                      +++|++++.||.|++|++............                       ..++.+....    ...+..+.+|.. 
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~----~~~~~~~~~~~~~  394 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYG-----------------------NRDGILNPLP----IPLYASYQSSQDN  394 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHHC-------------------------------------CEE----CCEEEEECCTTCC
T ss_pred             CCEEEEEECCCeEEEEECCCCccceeeeec-----------------------ccccccCccc----chhhhhhcCcccC
Confidence            999999999999999999765322221111                       1111111111    235667788876 


Q ss_pred             -CEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640         543 -EVSKVSFHPTGKLVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       543 -~v~~l~~spdg~~l~s~s~dg~i~iwd~~  571 (616)
                       .|++++|+|++++|++++.||.|++|+++
T Consensus       395 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          395 DYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             CceEEEEccCCCceEEEEecCceEEEEeec
Confidence             99999999999999999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.5e-43  Score=359.93  Aligned_cols=292  Identities=20%  Similarity=0.374  Sum_probs=258.7

Q ss_pred             hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEE
Q psy3640         177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLW  255 (616)
Q Consensus       177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iw  255 (616)
                      ....+.+++|.++|++++|+|+|++||+|+.||+|+|||+.+++....+.+|...|.+++|+|++.++ +++.|+.|++|
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw  135 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF  135 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999999955 89999999999


Q ss_pred             eCCCCc-------eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-----eecee---eEEEcC
Q psy3640         256 DIKSGH-------EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-----RGHSA---EVTFSP  320 (616)
Q Consensus       256 d~~~~~-------~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~---~v~~~~  320 (616)
                      |+.+..       ....+.+|.+.|.++.|.|..+..|++|+.|++|++||+.+++.+..+     .+|..   .+++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            997542       345678999999999999666778999999999999999999988877     34444   346766


Q ss_pred             -CCCEEEEEeCCCcEEEEECC-CCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccccccc
Q psy3640         321 -DQSTFCSCSMDHTARIFNTN-SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRA  398 (616)
Q Consensus       321 -~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  398 (616)
                       ++.++++|+.||.|++||++ .++.+..+.+|...|.+++|+|++++|++|+.||+|++||++                
T Consensus       216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~----------------  279 (380)
T 3iz6_a          216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR----------------  279 (380)
T ss_dssp             SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT----------------
T ss_pred             CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC----------------
Confidence             88999999999999999998 457788899999999999999999999999999999999998                


Q ss_pred             CCcceEEEecC-------ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe----ecCCCCEEEEEEcCCCCEE
Q psy3640         399 SHKPIHILTGH-------SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL----KNHEDEVLDIAFDYSGSKL  467 (616)
Q Consensus       399 ~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l  467 (616)
                      ....+..+..+       ...+.+++|+|+++++++|+.||.|++||+.+++....+    .+|.+.|.+++|+|++.+|
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  359 (380)
T 3iz6_a          280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL  359 (380)
T ss_dssp             TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEE
T ss_pred             CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEE
Confidence            44444444332       234889999999999999999999999999999888777    5789999999999999999


Q ss_pred             EEEeCCCcEEEEecCCc
Q psy3640         468 ATASSDQTANLWTVGGA  484 (616)
Q Consensus       468 ~~~~~dg~i~iwd~~~~  484 (616)
                      ++|+.|++|++|++...
T Consensus       360 ~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          360 CTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EEECTTSCEEEEECCSS
T ss_pred             EEeeCCCCEEEEecCCC
Confidence            99999999999999764

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.7e-42  Score=345.79  Aligned_cols=288  Identities=21%  Similarity=0.381  Sum_probs=258.2

Q ss_pred             eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece---eeEEEcCCCCEEEEEeCCCcEEEEE
Q psy3640         262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AEVTFSPDQSTFCSCSMDHTARIFN  338 (616)
Q Consensus       262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~~~dg~i~i~d  338 (616)
                      ....+.+|.+.|++++|+ |++.+|++|+.||+|++||..+++....+..+.   ..++|+|++..+++++.|+.+++|+
T Consensus        56 ~~~~l~gH~~~V~~~~~s-~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             EEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEecCCCCeEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            447889999999999999 889999999999999999999998888877664   4568999999999999999999999


Q ss_pred             CCCC------ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccc
Q psy3640         339 TNSG------QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE  412 (616)
Q Consensus       339 ~~~~------~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (616)
                      +...      .....+..|...|.+++|+|++..|++++.|++|++||+.                ....+..+.+|...
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~----------------~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE----------------SGQLLQSFHGHGAD  198 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT----------------TCCEEEEEECCSSC
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC----------------CCeEEEEEcCCCCC
Confidence            8653      3456777899999999999999999999999999999998                77788889999999


Q ss_pred             eeEEEEcc--CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeE
Q psy3640         413 ISNCLFNF--SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQT  490 (616)
Q Consensus       413 i~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  490 (616)
                      +.++.++|  ++..+++|+.||.|++||+++++++..+..|...|.+++|+|++.+|++++.|+++++||+.......  
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~--  276 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA--  276 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--
Confidence            99999987  46899999999999999999999999999999999999999999999999999999999997642110  


Q ss_pred             EeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640         491 FYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       491 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~  570 (616)
                                                       ++          ....+...+++++|+|+|++|++|+.|+.|++||+
T Consensus       277 ---------------------------------~~----------~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~  313 (354)
T 2pbi_B          277 ---------------------------------IY----------SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV  313 (354)
T ss_dssp             ---------------------------------EE----------CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ---------------------------------EE----------cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence                                             00          01123457889999999999999999999999999


Q ss_pred             CcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         571 ESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       571 ~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      .+++.+..+.+|.++|++++|+|+|++|++|+.||+|++|+
T Consensus       314 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          314 LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             TTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            99999999999999999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-42  Score=348.20  Aligned_cols=314  Identities=25%  Similarity=0.361  Sum_probs=249.5

Q ss_pred             hhhheecccCCc-ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640         177 YEKFKMLKSHLL-PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC---TYRGHQNVVYAVAFSEPYGCL-TGSYDRT  251 (616)
Q Consensus       177 ~~~~~~l~~h~~-~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~---~~~~h~~~I~~l~fs~~~~ll-s~s~d~~  251 (616)
                      +.++..+.+|.. .|.+++|+|+|++||+|+.|++|+|||+.++....   ...+|...|.+++|+|++.++ +++.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            456788999998 99999999999999999999999999998886432   236899999999999999855 9999999


Q ss_pred             EEEEeCCCCc--eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEe
Q psy3640         252 CKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCS  329 (616)
Q Consensus       252 I~iwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~  329 (616)
                      |++||+.++.  .+..+.+|...|.+++|+ |++++|++++.|++|++||+.++...                       
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~-----------------------  140 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEY-----------------------  140 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCE-----------------------
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCe-----------------------
Confidence            9999998774  577889999999999999 78999999999999999987644211                       


Q ss_pred             CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                                   ..+..+..|...|.+++|+|++++|++++.|+.|++||.+..              .......+.+|
T Consensus       141 -------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~--------------~~~~~~~~~~h  193 (345)
T 3fm0_A          141 -------------ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED--------------DWVCCATLEGH  193 (345)
T ss_dssp             -------------EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT--------------EEEEEEEECCC
T ss_pred             -------------EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC--------------CEEEEEEecCC
Confidence                         123445678999999999999999999999999999998621              12345678899


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEeec-CCCCEEEEEEcCCCCEEEEEeCC
Q psy3640         410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM---------------CCFYTLKN-HEDEVLDIAFDYSGSKLATASSD  473 (616)
Q Consensus       410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~d  473 (616)
                      ...|.+++|+|++++|++++.|+.|++||....               .++..+.+ |...|.+++|+|++..|++++.|
T Consensus       194 ~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  273 (345)
T 3fm0_A          194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD  273 (345)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETT
T ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCC
Confidence            999999999999999999999999999996321               23444444 67788888888888888888888


Q ss_pred             CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640         474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG  553 (616)
Q Consensus       474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg  553 (616)
                      +.+++|+.........       .   .                            .........+|...|++++|+|++
T Consensus       274 ~~i~vw~~~~~~~~~~-------~---~----------------------------~~~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          274 DAIRVFQEDPNSDPQQ-------P---T----------------------------FSLTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             SCEEEEEECTTSCTTS-------C---C----------------------------EEEEEEETTSSSSCEEEEEECSSS
T ss_pred             CeEEEEEeCCCCCcce-------e---e----------------------------EEEEeeecccccCcEeEeEEeCCC
Confidence            8888888754311000       0   0                            011223345799999999999998


Q ss_pred             -CEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640         554 -KLVLSGSQDTTCRLWSTESGECIQVL  579 (616)
Q Consensus       554 -~~l~s~s~dg~i~iwd~~~~~~~~~~  579 (616)
                       .+||+|+.||+|++|++.+++.....
T Consensus       316 ~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          316 PGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             TTEEEEEETTSCEEEEEECC-------
T ss_pred             ceEEEEcCCCCcEEEEEecCCCCcccc
Confidence             49999999999999999988766544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.9e-42  Score=338.20  Aligned_cols=292  Identities=22%  Similarity=0.345  Sum_probs=249.6

Q ss_pred             ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEE
Q psy3640         261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIF  337 (616)
Q Consensus       261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~  337 (616)
                      +...++.+|.+.|.+++|+ |+++++++++.||+|++||+.+++.+..+..+...   ++|+|+++++++|+.|+.|++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CCEEEEEEECSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             eeEEeecCCCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            3457889999999999999 88999999999999999999999999988877654   5899999999999999999999


Q ss_pred             ECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEE
Q psy3640         338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL  417 (616)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  417 (616)
                      |+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||++.               .......+.+|...|.+++
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~---------------~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---------------NWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG---------------TTEEEEEECCCCSCEEEEE
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC---------------CcchhhhhcccCCcEEEEE
Confidence            9999999999999999999999999999999999999999999973               2245567889999999999


Q ss_pred             Ecc-CCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640         418 FNF-SNSMIASSSLDGTAKLWDVRTMCCFYTLK-NHEDEVLDIAFDY--SGSKLATASSDQTANLWTVGGAVELLQTFYG  493 (616)
Q Consensus       418 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  493 (616)
                      |+| ++..+++|+.|+.|++||++++.....+. .+...+..++|+|  ++.+|++++.|+.|++||+.+          
T Consensus       148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~----------  217 (304)
T 2ynn_A          148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----------  217 (304)
T ss_dssp             ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----------
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----------
Confidence            999 67899999999999999998876655544 3446677777765  455666666666666666544          


Q ss_pred             cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640         494 HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG  573 (616)
Q Consensus       494 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~  573 (616)
                                                           ..++..+.+|...|++++|+|++++|++|+.||+|++||+.++
T Consensus       218 -------------------------------------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          218 -------------------------------------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             -------------------------------------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             -------------------------------------CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence                                                 2556677899999999999999999999999999999999999


Q ss_pred             eeeeEeccCcccEEEEEEeeCCC--EEEEeeCCCcEEEcccCCCC
Q psy3640         574 ECIQVLKAHEDDVFSCGFNYNGD--TIITASKDNTCCIWRSMNRD  616 (616)
Q Consensus       574 ~~~~~~~~h~~~V~~l~~s~~~~--~l~t~s~Dg~i~vW~~~~~e  616 (616)
                      +++..+..|...+.+++|+|++.  ++++|+.|| +.+|++.+.|
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~~~  304 (304)
T 2ynn_A          261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGNDE  304 (304)
T ss_dssp             CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC---
T ss_pred             ceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEeccCC
Confidence            99999999999999999999885  577776655 7888887654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-41  Score=354.02  Aligned_cols=324  Identities=28%  Similarity=0.488  Sum_probs=275.7

Q ss_pred             hhhhheecccCCcce-EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEE
Q psy3640         176 RYEKFKMLKSHLLPL-TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKL  254 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i-~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~i  254 (616)
                      ++...+.+.+|...| +++  +++|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +..+++++.||+|++
T Consensus       107 ~~~~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~v  183 (445)
T 2ovr_B          107 ELKSPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKV  183 (445)
T ss_dssp             CCCCCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEE
T ss_pred             CcceeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEE
Confidence            344567899999975 554  4578999999999999999999999999999999999999998 345779999999999


Q ss_pred             EeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcE
Q psy3640         255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       255 wd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i  334 (616)
                      ||+.+++.+..+.+|...|.+++|+   ++.+++++.||.|++||+.                                 
T Consensus       184 wd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~---------------------------------  227 (445)
T 2ovr_B          184 WNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIE---------------------------------  227 (445)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESS---------------------------------
T ss_pred             EECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECC---------------------------------
Confidence            9999999999999999999999986   4667777776666666654                                 


Q ss_pred             EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                            +++.+..+.+|...|.+++|  +++.+++|+.||.|++||++                ....+..+.+|...+.
T Consensus       228 ------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~  283 (445)
T 2ovr_B          228 ------TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE----------------TETCLHTLQGHTNRVY  283 (445)
T ss_dssp             ------SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG----------------GTEEEEEECCCSSCEE
T ss_pred             ------CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC----------------CCcEeEEecCCCCceE
Confidence                  44455556678888999998  67889999999999999987                6677788888999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc
Q psy3640         415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH  494 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  494 (616)
                      ++.+  ++..+++++.||.|++||+++++.+..+..|...+.++.++  +.++++++.||.|++||+.++          
T Consensus       284 ~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~----------  349 (445)
T 2ovr_B          284 SLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTG----------  349 (445)
T ss_dssp             EEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTC----------
T ss_pred             EEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCC----------
Confidence            9888  78899999999999999999999999999898888888774  568888888888888888653          


Q ss_pred             CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee---ccccCEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640         495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY---GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~  571 (616)
                                                           .....+.   .|...|++++|+  +++|++|+.||.|++||+.
T Consensus       350 -------------------------------------~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          350 -------------------------------------QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             -------------------------------------CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             -------------------------------------cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence                                                 2222333   378899999995  5799999999999999999


Q ss_pred             cCeeeeEe-----ccCcccEEEEEEeeCCCEEEEeeCCCc----EEEcccCCC
Q psy3640         572 SGECIQVL-----KAHEDDVFSCGFNYNGDTIITASKDNT----CCIWRSMNR  615 (616)
Q Consensus       572 ~~~~~~~~-----~~h~~~V~~l~~s~~~~~l~t~s~Dg~----i~vW~~~~~  615 (616)
                      +++.+..+     .+|.+.|++++|+|++.+|++++.||+    +.|||+..+
T Consensus       391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            99999888     578899999999999999999999998    999999753

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.2e-42  Score=338.26  Aligned_cols=288  Identities=22%  Similarity=0.389  Sum_probs=254.4

Q ss_pred             hhhhheecccCCcceEEEEECCCC-CEEEEEECCCcEEEEECCC-----CcEEEEEeccCCcEEEEEEcCCCCEE-EEEC
Q psy3640         176 RYEKFKMLKSHLLPLTNITFDKFG-TRCLTGSYDRTCKLWDIKS-----GHEICTYRGHQNVVYAVAFSEPYGCL-TGSY  248 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i~~v~~s~~g-~~lasgs~dg~i~iwd~~~-----~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~  248 (616)
                      .+.+...|.+|.++|++++|+|++ ++|++|+.|++|++||+.+     +.++..+.+|...|.+++|+|++.++ +++.
T Consensus         6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~   85 (319)
T 3frx_A            6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW   85 (319)
T ss_dssp             EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence            345667899999999999999965 8999999999999999864     34577899999999999999999955 9999


Q ss_pred             CCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCC----
Q psy3640         249 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPD----  321 (616)
Q Consensus       249 d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~----  321 (616)
                      |++|++||+.+++.+..+.+|...|.+++|+ +++.++++++.|++|++||+. ++++..+.+|...   +++.|.    
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~  163 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD  163 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence            9999999999999999999999999999999 889999999999999999996 5566777776544   467774    


Q ss_pred             --CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccC
Q psy3640         322 --QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS  399 (616)
Q Consensus       322 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  399 (616)
                        +..+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++|+.||.|++||+.                .
T Consensus       164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~----------------~  227 (319)
T 3frx_A          164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA----------------A  227 (319)
T ss_dssp             --CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT----------------T
T ss_pred             CCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----------------C
Confidence              4589999999999999999999999999999999999999999999999999999999997                5


Q ss_pred             CcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--------CCCCEEEEEEcCCCCEEEEEe
Q psy3640         400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--------HEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       400 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~l~~~~  471 (616)
                      ...+..+.. ...+.+++|+|++.++++++.+ .+++|++.....+..+..        +...+.+++|+|+|++|++++
T Consensus       228 ~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~  305 (319)
T 3frx_A          228 KKAMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY  305 (319)
T ss_dssp             TEEEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee
Confidence            556666654 4689999999999999988865 599999998877766643        356799999999999999999


Q ss_pred             CCCcEEEEecCC
Q psy3640         472 SDQTANLWTVGG  483 (616)
Q Consensus       472 ~dg~i~iwd~~~  483 (616)
                      .||.|++|++.+
T Consensus       306 ~Dg~i~vWd~~t  317 (319)
T 3frx_A          306 TDNVIRVWQVMT  317 (319)
T ss_dssp             TTSCEEEEEEEE
T ss_pred             cCceEEEEEEee
Confidence            999999999854

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.9e-41  Score=333.57  Aligned_cols=292  Identities=29%  Similarity=0.495  Sum_probs=264.4

Q ss_pred             hhhhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcE
Q psy3640         174 AQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTC  252 (616)
Q Consensus       174 ~~~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I  252 (616)
                      .+.+.....+.+|..+|++++|+|+|++||+|+.||.|++|++.+++....+.+|...|.+++|+|++.++ +++.|+.|
T Consensus        10 ~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i   89 (312)
T 4ery_A           10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL   89 (312)
T ss_dssp             CCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence            34566778899999999999999999999999999999999999999999999999999999999999855 89999999


Q ss_pred             EEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEe
Q psy3640         253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCS  329 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~  329 (616)
                      ++||+.+++.+..+.+|...|.+++|+ |+++++++++.|+.|++||+++++.+..+..|..   .++|+|++.++++++
T Consensus        90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  168 (312)
T 4ery_A           90 KIWDVSSGKCLKTLKGHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS  168 (312)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence            999999999999999999999999999 8899999999999999999999999998887654   458999999999999


Q ss_pred             CCCcEEEEECCCCceeEEee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640         330 MDHTARIFNTNSGQEMHTLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG  408 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (616)
                      .||.|++||+++++.+..+. .+..++..++|+|++++|++++.|+.|++||++                ....+..+.+
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----------------~~~~~~~~~~  232 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----------------KGKCLKTYTG  232 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT----------------TTEEEEEECS
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC----------------CCcEEEEEEe
Confidence            99999999999998877764 466789999999999999999999999999997                6666777777


Q ss_pred             CccceeE---EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEecC
Q psy3640         409 HSQEISN---CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS--SDQTANLWTVG  482 (616)
Q Consensus       409 ~~~~i~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iwd~~  482 (616)
                      |......   ....+++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++.+++++  .|+.|++|+.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          233 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            7655432   23346788999999999999999999999999999999999999999999999987  69999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.4e-42  Score=341.36  Aligned_cols=325  Identities=19%  Similarity=0.266  Sum_probs=276.6

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCce--
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE--  262 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~--  262 (616)
                      -|..+|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++++++.|+.|++||+.+++.  
T Consensus         7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCS
T ss_pred             ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCcee
Confidence            356789999999999999999888888888776666666666899999999999999977555599999999988753  


Q ss_pred             -EEEee--CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3640         263 -ICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNT  339 (616)
Q Consensus       263 -~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~  339 (616)
                       ...+.  +|...|.+++|+ |+++++++++.|+.|++||+.+++.                                  
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~----------------------------------  131 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTP----------------------------------  131 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC------------------------------------
T ss_pred             eeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCc----------------------------------
Confidence             33333  788999999998 7788888888888877777654321                                  


Q ss_pred             CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEc
Q psy3640         340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFN  419 (616)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  419 (616)
                         .....+..|...|.+++|+|+++++++++.||.|++||++                .......+..|...+.+++|+
T Consensus       132 ---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~----------------~~~~~~~~~~~~~~i~~~~~~  192 (337)
T 1gxr_A          132 ---RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----------------NQTLVRQFQGHTDGASCIDIS  192 (337)
T ss_dssp             ---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEEEECCCSSCEEEEEEC
T ss_pred             ---ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC----------------CCceeeeeecccCceEEEEEC
Confidence               1344556688899999999999999999999999999997                667778888899999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCee
Q psy3640         420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVS  499 (616)
Q Consensus       420 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  499 (616)
                      |+++.+++++.||.|++||+++++.+..+. +...+.+++|+|+++++++++.++.+++|++....              
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--------------  257 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--------------  257 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC--------------
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC--------------
Confidence            999999999999999999999998887765 67789999999999999999888888888886531              


Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640         500 KVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL  579 (616)
Q Consensus       500 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~  579 (616)
                                                        ...+..|...|++++|+|++++|++++.||.|++||+.+++.+...
T Consensus       258 ----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~  303 (337)
T 1gxr_A          258 ----------------------------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             ----------------------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ----------------------------------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe
Confidence                                              1134568899999999999999999999999999999999888554


Q ss_pred             ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         580 KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       580 ~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                       .|...|.+++|+|++++|++++.||.|++|++.
T Consensus       304 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          304 -KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             -ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             -cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence             578899999999999999999999999999973

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.4e-41  Score=334.86  Aligned_cols=288  Identities=24%  Similarity=0.392  Sum_probs=252.0

Q ss_pred             eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-----ceeEEeeeceeeE---EEcCCCCEEEEEeCCCc
Q psy3640         262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-----ECIQTYRGHSAEV---TFSPDQSTFCSCSMDHT  333 (616)
Q Consensus       262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~v---~~~~~~~~l~~~~~dg~  333 (616)
                      ...++.+|.+.|.+++|+|.++++|++|+.|++|++|++...     ..+..+.+|...+   +|+|++.++++++.|+.
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~   88 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT   88 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence            346789999999999999556799999999999999998643     4566777777554   79999999999999999


Q ss_pred             EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640         334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI  413 (616)
Q Consensus       334 i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  413 (616)
                      |++||+.+++.+..+.+|...|.+++|+|++.++++|+.|++|++||++                 ...+..+.+|...+
T Consensus        89 v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-----------------~~~~~~~~~h~~~v  151 (319)
T 3frx_A           89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-----------------GQCLATLLGHNDWV  151 (319)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-----------------SCEEEEECCCSSCE
T ss_pred             EEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-----------------CCeEEEEeccCCcE
Confidence            9999999999999999999999999999999999999999999999984                 45677888999999


Q ss_pred             eEEEEccC------CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy3640         414 SNCLFNFS------NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL  487 (616)
Q Consensus       414 ~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  487 (616)
                      .++.+.|.      +..+++++.|+.|++||+++++....+.+|...|.+++|+|++++|++++.||.|++||+...   
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---  228 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---  228 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Confidence            99999985      448999999999999999999999999999999999999999999999999999999998764   


Q ss_pred             eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEE
Q psy3640         488 LQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRL  567 (616)
Q Consensus       488 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~i  567 (616)
                                                                  +.+..+. +..+|.+++|+|++.+|++++.+ .+++
T Consensus       229 --------------------------------------------~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~-~i~v  262 (319)
T 3frx_A          229 --------------------------------------------KAMYTLS-AQDEVFSLAFSPNRYWLAAATAT-GIKV  262 (319)
T ss_dssp             --------------------------------------------EEEEEEE-CCSCEEEEEECSSSSEEEEEETT-EEEE
T ss_pred             --------------------------------------------cEEEEec-CCCcEEEEEEcCCCCEEEEEcCC-CcEE
Confidence                                                        2222233 34679999999999999988765 4999


Q ss_pred             ecCCcCeeeeEec--------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         568 WSTESGECIQVLK--------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       568 wd~~~~~~~~~~~--------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      |+++.+..+..+.        .|...+.+++|+|||++|++|+.||+|++|++.+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          263 FSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            9998887776654        34567999999999999999999999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.8e-42  Score=341.85  Aligned_cols=282  Identities=21%  Similarity=0.269  Sum_probs=241.5

Q ss_pred             ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCC-----------CcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcE
Q psy3640         184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKS-----------GHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTC  252 (616)
Q Consensus       184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~-----------~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I  252 (616)
                      ..|...|.+++|+|||++|++++ |+++++||...           .........|...|.+++|+|++.+++++.||+|
T Consensus        27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v  105 (344)
T 4gqb_B           27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV  105 (344)
T ss_dssp             SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence            45778899999999999999888 66788886311           1112233446788999999999999999999999


Q ss_pred             EEEeCCCCceEEE----eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE---EEcCCCC-E
Q psy3640         253 KLWDIKSGHEICT----YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQS-T  324 (616)
Q Consensus       253 ~iwd~~~~~~~~~----~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~~~-~  324 (616)
                      +|||+.+++.+..    +.+|.+.|++++|+ |++++|++|+.|++|++||+.+++++..+.+|...+   +|+|++. .
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            9999999876543    45899999999999 899999999999999999999999999999887654   7999874 7


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCc
Q psy3640         325 FCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK  401 (616)
Q Consensus       325 l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  401 (616)
                      +++++.|+.|++||+++++....+.  .|...+.+++|+|+ ++++++|+.||.|++||++                ...
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----------------~~~  248 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----------------STS  248 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----------------C--
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC----------------CCc
Confidence            8999999999999999999888774  45567999999985 5789999999999999998                777


Q ss_pred             ceEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q psy3640         402 PIHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLW  479 (616)
Q Consensus       402 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iw  479 (616)
                      ++..+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.. .+.+|.+.|.+++|+|++. +|++++.|++|++|
T Consensus       249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence            888999999999999999998 57999999999999999998765 5678999999999999986 56789999999999


Q ss_pred             ecCCc
Q psy3640         480 TVGGA  484 (616)
Q Consensus       480 d~~~~  484 (616)
                      ++...
T Consensus       328 ~v~~~  332 (344)
T 4gqb_B          328 VVPTE  332 (344)
T ss_dssp             ECCC-
T ss_pred             ECCCC
Confidence            99764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.8e-42  Score=346.98  Aligned_cols=283  Identities=19%  Similarity=0.299  Sum_probs=242.2

Q ss_pred             ccCCcceEEEEECCCCCEEEEEEC------CCcEEEEECCCCcEE----EEEeccCCcEEEEEEcCCCCEEEEECCCcEE
Q psy3640         184 KSHLLPLTNITFDKFGTRCLTGSY------DRTCKLWDIKSGHEI----CTYRGHQNVVYAVAFSEPYGCLTGSYDRTCK  253 (616)
Q Consensus       184 ~~h~~~i~~v~~s~~g~~lasgs~------dg~i~iwd~~~~~~~----~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~  253 (616)
                      ..|...|++++|||||++||+|+.      |+.|++|+..++...    ....+|...|.+++|+|++.+++++.||+|+
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~  118 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVE  118 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEE
Confidence            479999999999999999999997      788999998877543    3456799999999999999999999999999


Q ss_pred             EEeCCCCceE----EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCC-EE
Q psy3640         254 LWDIKSGHEI----CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQS-TF  325 (616)
Q Consensus       254 iwd~~~~~~~----~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~-~l  325 (616)
                      +||+.+++..    ....+|.+.|.+++|+ |++++|++++.|+.|++||+.+++++..+.+|...   ++|+|++. .+
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            9999988654    3445899999999999 88999999999999999999999999999887654   57999875 78


Q ss_pred             EEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcc
Q psy3640         326 CSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP  402 (616)
Q Consensus       326 ~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  402 (616)
                      ++++.||.|++||+++++....+.  .|...+.+++|+|+ +.+|++|+.|+.|++||++                ....
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~----------------~~~~  261 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK----------------NPDS  261 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS----------------CGGG
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECC----------------CCcE
Confidence            999999999999999988766553  46778999999997 5689999999999999998                6777


Q ss_pred             eEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEe
Q psy3640         403 IHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWT  480 (616)
Q Consensus       403 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd  480 (616)
                      ...+.+|...|.+++|+|++ ++|++|+.|++|++||+++++.+..+ +|.+.|++++|+| ++.+|++++.||+|++|+
T Consensus       262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          262 AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            88899999999999999987 57899999999999999999887665 7999999999998 799999999999999999


Q ss_pred             cCCc
Q psy3640         481 VGGA  484 (616)
Q Consensus       481 ~~~~  484 (616)
                      +...
T Consensus       341 ~~~~  344 (357)
T 4g56_B          341 LPSE  344 (357)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            9764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.3e-43  Score=354.82  Aligned_cols=307  Identities=26%  Similarity=0.443  Sum_probs=262.2

Q ss_pred             EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEE
Q psy3640         252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSC  328 (616)
Q Consensus       252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~  328 (616)
                      +..|+..+......+.+|.+.|++++|+ |++++|++|+.|++|++||..+++....+..|...   ++|+|+++++++|
T Consensus        48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           48 AVSFNPTDLVCCRTLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             CCCCCCCCCEEEEEECCCSSCEEEEEEC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred             ccccccceeEEeecccccccEEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence            3456666777788999999999999999 78999999999999999999999999999887654   4899999999999


Q ss_pred             eCCCcEEEEECCCCc-------eeEEeecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640         329 SMDHTARIFNTNSGQ-------EMHTLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       329 ~~dg~i~i~d~~~~~-------~~~~~~~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                      +.|+.+++||+.+..       ....+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.                ..
T Consensus       127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~----------------~~  190 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT----------------TG  190 (380)
T ss_dssp             CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT----------------TC
T ss_pred             eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC----------------CC
Confidence            999999999987532       34567789999999999996 4579999999999999997                44


Q ss_pred             cceEEE-----ecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640         401 KPIHIL-----TGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVR-TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD  473 (616)
Q Consensus       401 ~~~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  473 (616)
                      ..+..+     .+|...+.++.+++ ++.++++|+.|+.|++||++ ....+..+.+|...|.+++|+|++++|++++.|
T Consensus       191 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          191 QRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             CEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSS
T ss_pred             cEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCC
Confidence            555544     57889999999976 78999999999999999998 457788899999999999999999999999999


Q ss_pred             CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640         474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG  553 (616)
Q Consensus       474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg  553 (616)
                      |+|++||+.++... ..+..+..                                       ....+...|++++|+|+|
T Consensus       271 ~~i~lwd~~~~~~~-~~~~~~~~---------------------------------------~~~~~~~~v~~~~~s~~g  310 (380)
T 3iz6_a          271 GTCRLFDMRTGHQL-QVYNREPD---------------------------------------RNDNELPIVTSVAFSISG  310 (380)
T ss_dssp             SCEEEEETTTTEEE-EEECCCCS---------------------------------------SSCCSSCSCSEEEECSSS
T ss_pred             CeEEEEECCCCcEE-EEeccccc---------------------------------------ccccccCceEEEEECCCC
Confidence            99999999875321 11110000                                       001234468999999999


Q ss_pred             CEEEEEECCCcEEEecCCcCeeeeEe----ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         554 KLVLSGSQDTTCRLWSTESGECIQVL----KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       554 ~~l~s~s~dg~i~iwd~~~~~~~~~~----~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      ++|++|+.||.|++||+.+++.+..+    .+|.+.|.+++|+|+|++|+||+.||+|++|++...
T Consensus       311 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            99999999999999999999988777    689999999999999999999999999999999763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.6e-42  Score=345.40  Aligned_cols=325  Identities=14%  Similarity=0.156  Sum_probs=240.0

Q ss_pred             EEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee
Q psy3640         235 VAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA  314 (616)
Q Consensus       235 l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~  314 (616)
                      +.+.+++.++.++.+.....|++....    ...|...|++++|+ |+|++|++++.|.. ++||               
T Consensus        11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fS-pDG~~las~s~d~~-~~wd---------------   69 (357)
T 4g56_B           11 VDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYR-RDGALLLAASSLSS-RTWG---------------   69 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEEC-SSSCEEEEEECSSS-SSCC---------------
T ss_pred             CCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEEC-CCCCEEEEEcCCCC-cccc---------------
Confidence            445556667777778888999986543    34799999999999 89999999998542 4443               


Q ss_pred             eEEEcCCCCEEEEEeCCCcEEEEECCCCce----eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640         315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQE----MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA  390 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  390 (616)
                                       +.+++|+..++..    ......|...|.+++|+|++. +++++.||+|++||+.....    
T Consensus        70 -----------------~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~----  127 (357)
T 4g56_B           70 -----------------GSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKES----  127 (357)
T ss_dssp             -----------------EEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC-----------
T ss_pred             -----------------CeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccce----
Confidence                             3456666554432    233446888999999999975 56778899999999873211    


Q ss_pred             ccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEE
Q psy3640         391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLAT  469 (616)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~  469 (616)
                              .........+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++. ++++
T Consensus       128 --------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s  199 (357)
T 4g56_B          128 --------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS  199 (357)
T ss_dssp             ---------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred             --------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee
Confidence                    1112234567999999999999999999999999999999999999999999999999999999875 7899


Q ss_pred             EeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEE
Q psy3640         470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYS-GSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVS  548 (616)
Q Consensus       470 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~  548 (616)
                      ++.||.|++||+.+........  .......+.+++|+|+ +.++++|+.|+.|++||+.+. +....+.+|...|++++
T Consensus       200 ~~~dg~v~~wd~~~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~  276 (357)
T 4g56_B          200 CGEDGRILLWDTRKPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLA  276 (357)
T ss_dssp             EETTSCEEECCTTSSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEE
T ss_pred             eccCCceEEEECCCCceeeeee--eccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEE
Confidence            9999999999998764332221  1122345788999997 568999999999999999885 56778889999999999


Q ss_pred             EecCC-CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEee-CCCEEEEeeCCCcEEEcccCC
Q psy3640         549 FHPTG-KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY-NGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       549 ~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      |+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++++|+| ++++|+|++.||+|++|++.+
T Consensus       277 ~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          277 YSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            99987 58999999999999999999988765 7999999999998 789999999999999999965

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-41  Score=339.94  Aligned_cols=309  Identities=25%  Similarity=0.417  Sum_probs=252.7

Q ss_pred             ceEEEeeCCCC-cEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE---eeece---eeEEEcCCCCEEEEEeCCCc
Q psy3640         261 HEICTYRGHQN-VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT---YRGHS---AEVTFSPDQSTFCSCSMDHT  333 (616)
Q Consensus       261 ~~~~~~~~h~~-~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~---~~v~~~~~~~~l~~~~~dg~  333 (616)
                      +.+..+.+|.. .|++++|+ |++++|++|+.|++|++||+.++.....   ..+|.   ..++|+|++++|++++.|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~s-p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWN-PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEEC-TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEEC-CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            45678889988 99999999 8899999999999999999988764322   24554   45689999999999999999


Q ss_pred             EEEEECCCCc--eeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640         334 ARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ  411 (616)
Q Consensus       334 i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (616)
                      +++||..++.  .+..+.+|...|.+++|+|++++|++|+.|++|++||++...             ....+..+.+|..
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~-------------~~~~~~~~~~h~~  151 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED-------------EYECVSVLNSHTQ  151 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTS-------------CEEEEEEECCCCS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCC-------------CeEEEEEecCcCC
Confidence            9999998764  577889999999999999999999999999999999997321             2234567788999


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640         412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ  489 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  489 (616)
                      .|.+++|+|++.+|++++.|+.|++||.+++.  +...+.+|...|.+++|+|++++|++++.|++|++|+.........
T Consensus       152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~  231 (345)
T 3fm0_A          152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG  231 (345)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred             CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence            99999999999999999999999999998875  4577889999999999999999999999999999999632211000


Q ss_pred             EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeec-cccCEEEEEEecCCCEEEEEECCCcEEEe
Q psy3640         490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHPTGKLVLSGSQDTTCRLW  568 (616)
Q Consensus       490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iw  568 (616)
                                 +            .....+.         ...++..+.+ |...|.+++|+|++..|++++.|+.|++|
T Consensus       232 -----------~------------~~~~~~~---------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          232 -----------V------------ACSGSDP---------SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF  279 (345)
T ss_dssp             -----------C------------CCC---C---------EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             -----------c------------eeeccCC---------ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence                       0            0000000         0233344444 88999999999999999999999999999


Q ss_pred             cCCcCee---------eeEeccCcccEEEEEEeeCC-CEEEEeeCCCcEEEcccCCC
Q psy3640         569 STESGEC---------IQVLKAHEDDVFSCGFNYNG-DTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       569 d~~~~~~---------~~~~~~h~~~V~~l~~s~~~-~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      +...+..         .....+|.+.|++++|+|++ .+||+|+.||+|++|++.++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             EECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             EeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence            9876531         22346899999999999998 59999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.8e-41  Score=354.77  Aligned_cols=343  Identities=24%  Similarity=0.450  Sum_probs=285.8

Q ss_pred             hheecccCCcce-EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeC
Q psy3640         179 KFKMLKSHLLPL-TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDI  257 (616)
Q Consensus       179 ~~~~l~~h~~~i-~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~  257 (616)
                      ....+.+|...+ +++.+  ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|++++.+++++.||+|++||+
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~  190 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI  190 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence            346789999885 66666  568999999999999999999999999999999999999999997889999999999999


Q ss_pred             CCCceEEEeeCCCCcEEEEEEeC-CCCCEEEEEECCCeEEEEeCCCcceeEEeeecee--eEEEcCCCCEEEEEeCCCcE
Q psy3640         258 KSGHEICTYRGHQNVVYAVAFSE-PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       258 ~~~~~~~~~~~h~~~V~~l~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~~~dg~i  334 (616)
                      .+++.+..+.+|...|.+++|++ +++.++++++.|+.|++||+.++...........  .+...|.             
T Consensus       191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------------  257 (464)
T 3v7d_B          191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE-------------  257 (464)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGG-------------
T ss_pred             CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccC-------------
Confidence            99999999999999999999985 5678999999999999999998765543221110  0111111             


Q ss_pred             EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                           ........+.+|...+.++  +++++++++|+.||.|++||++                ....+..+.+|...+.
T Consensus       258 -----~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~----------------~~~~~~~~~~~~~~v~  314 (464)
T 3v7d_B          258 -----ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA----------------QMKCLYILSGHTDRIY  314 (464)
T ss_dssp             -----GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETT----------------TTEEEEEECCCSSCEE
T ss_pred             -----CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECC----------------CCcEEEEecCCCCCEE
Confidence                 1223456677888998887  5678999999999999999998                7778888999999999


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc
Q psy3640         415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH  494 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  494 (616)
                      +++|+|+++.+++|+.||.|++||+++++++..+.+|...|.+++|+  +.++++++.||.|++||+.+...        
T Consensus       315 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~--------  384 (464)
T 3v7d_B          315 STIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR--------  384 (464)
T ss_dssp             EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE--------
T ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce--------
Confidence            99999999999999999999999999999999999999999999997  57999999999999999876311        


Q ss_pred             CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640         495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE  574 (616)
Q Consensus       495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~  574 (616)
                                                            ...  ..|...+..++|+|++++|++|+ ||.|++||+++++
T Consensus       385 --------------------------------------~~~--~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~  423 (464)
T 3v7d_B          385 --------------------------------------KFS--YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK  423 (464)
T ss_dssp             --------------------------------------EEE--EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred             --------------------------------------eee--ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence                                                  111  12556778889999999999998 8999999999999


Q ss_pred             eeeE-eccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         575 CIQV-LKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       575 ~~~~-~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      .+.. +.+|.+.|.+++|+ +..++++++.||.+.+|-
T Consensus       424 ~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          424 LVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             EEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            9975 67889999999997 445555666777666554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.5e-41  Score=332.31  Aligned_cols=312  Identities=24%  Similarity=0.338  Sum_probs=246.2

Q ss_pred             CCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCC--ceEEEe-eC-CCCcEEEEEEeCCCCCEEEEEECC
Q psy3640         217 KSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSG--HEICTY-RG-HQNVVYAVAFSEPYGDKILTGSFD  292 (616)
Q Consensus       217 ~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~--~~~~~~-~~-h~~~V~~l~~~~~~~~~l~s~s~d  292 (616)
                      .+.+.+..+.+|..+|.+++|+++ .+++++.|++|++||+.++  +....+ .+ |...|.+++|+ |++++|++++.|
T Consensus         2 ~~~~~~~~~~~h~~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~~~~las~s~D   79 (330)
T 2hes_X            2 ASINLIKSLKLYKEKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR-PHTSLLAAGSFD   79 (330)
T ss_dssp             -CCEEEEEEECCSSCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEEC-TTSSEEEEEETT
T ss_pred             cccccceeeccCCCceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEEC-CCCCEEEEEeCC
Confidence            345678899999999999999988 6669999999999999876  445556 44 99999999999 789999999999


Q ss_pred             CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640         293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF  372 (616)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~  372 (616)
                      ++|++||......                                .....+.+..+.+|...|.+++|+|++++|++|+.
T Consensus        80 ~~v~iw~~~~~~~--------------------------------~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~  127 (330)
T 2hes_X           80 STVSIWAKEESAD--------------------------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR  127 (330)
T ss_dssp             SCEEEEEC---------------------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred             CcEEEEEcccCcC--------------------------------ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence            9999999753210                                00123456677889999999999999999999999


Q ss_pred             CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC--eEEEEeec
Q psy3640         373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM--CCFYTLKN  450 (616)
Q Consensus       373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~  450 (616)
                      |++|++||++...            .....+..+.+|...|.+++|+|++.+|++++.|+.|++||..++  +++..+.+
T Consensus       128 D~~v~iwd~~~~~------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~  195 (330)
T 2hes_X          128 DKSVWIWETDESG------------EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG  195 (330)
T ss_dssp             TSCEEEEECCTTC------------CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred             CCEEEEEeccCCC------------CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC
Confidence            9999999985210            023456778899999999999999999999999999999998876  67888999


Q ss_pred             CCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         451 HEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG  528 (616)
Q Consensus       451 ~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  528 (616)
                      |...|.+++|+|+  +.+|++++.|++|++|++......        .. .                        .    
T Consensus       196 h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~--------~~-~------------------------~----  238 (330)
T 2hes_X          196 HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED--------DQ-Q------------------------E----  238 (330)
T ss_dssp             CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT--------SC-E------------------------E----
T ss_pred             CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc--------cc-c------------------------e----
Confidence            9999999999998  678999999999999998542100        00 0                        0    


Q ss_pred             CceEEeEEeec-cccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe--eee-EeccCcc-cEEEEEEee--CCCEEEEe
Q psy3640         529 GAVELLQTFYG-HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE--CIQ-VLKAHED-DVFSCGFNY--NGDTIITA  601 (616)
Q Consensus       529 ~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~--~~~-~~~~h~~-~V~~l~~s~--~~~~l~t~  601 (616)
                        ......+.+ |...|.+++|++++ +|++++.||.|++|+..+++  .+. .+.+|.. .|.+++|+|  ++++|++|
T Consensus       239 --~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          239 --WVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             --EEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             --eEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence              122333444 88999999999765 89999999999999998874  333 3467887 899999999  68999999


Q ss_pred             eCCCcEEEcccCC
Q psy3640         602 SKDNTCCIWRSMN  614 (616)
Q Consensus       602 s~Dg~i~vW~~~~  614 (616)
                      +.||+|++|++..
T Consensus       316 s~Dg~v~~W~~~~  328 (330)
T 2hes_X          316 GDDGIVNFWSLEK  328 (330)
T ss_dssp             ETTSEEEEEEC--
T ss_pred             cCCCcEEEEEecc
Confidence            9999999999865

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-43  Score=364.72  Aligned_cols=337  Identities=15%  Similarity=0.239  Sum_probs=276.7

Q ss_pred             CCcceEEEEECCCCC-EEEEE----------ECCCcEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCCE-EEEECCC
Q psy3640         186 HLLPLTNITFDKFGT-RCLTG----------SYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFSEPYGC-LTGSYDR  250 (616)
Q Consensus       186 h~~~i~~v~~s~~g~-~lasg----------s~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~  250 (616)
                      +..+|.+++|+|+|+ +||+|          +.||.|+|||+.++.   .+.. ..|...|.+++|+|++.+ ++++.|+
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg   89 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNG   89 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCC
Confidence            445799999999997 99999          899999999999876   3333 358999999999999985 4888999


Q ss_pred             cEEEEeCCC----CceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEE
Q psy3640         251 TCKLWDIKS----GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC  326 (616)
Q Consensus       251 ~I~iwd~~~----~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~  326 (616)
                      .|++||+.+    .+.+..+.+|...|.+++|+|.+++++++++.|+.|++||+.+++....             .    
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~-------------~----  152 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS-------------N----  152 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT-------------T----
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc-------------c----
Confidence            999999988    4588889999999999999943488999999999999999876651100             0    


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                             .      ..........|...|.+++|+|+ +.++++++.||.|++||++                .......
T Consensus       153 -------~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~----------------~~~~~~~  203 (416)
T 2pm9_A          153 -------Y------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK----------------AKKEVIH  203 (416)
T ss_dssp             -------C------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT----------------TTEEEEE
T ss_pred             -------c------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC----------------CCCcceE
Confidence                   0      00011123468889999999998 7899999999999999997                5556666


Q ss_pred             EecC------ccceeEEEEccCC-CEEEEEeCCC---cEEEEeCCCC-eEEEEee-cCCCCEEEEEEcC-CCCEEEEEeC
Q psy3640         406 LTGH------SQEISNCLFNFSN-SMIASSSLDG---TAKLWDVRTM-CCFYTLK-NHEDEVLDIAFDY-SGSKLATASS  472 (616)
Q Consensus       406 ~~~~------~~~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~v~~l~~~~-~~~~l~~~~~  472 (616)
                      +..+      ...+.+++|+|++ .++++++.|+   .|++||++++ .....+. .|...|.+++|+| ++.+|++++.
T Consensus       204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence            6665      7889999999997 6999999998   9999999986 6677777 8899999999999 8899999999


Q ss_pred             CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640         473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT  552 (616)
Q Consensus       473 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  552 (616)
                      ||.|++||+.+.                                               +.+..+.+|...|++++|+|+
T Consensus       284 dg~v~~wd~~~~-----------------------------------------------~~~~~~~~~~~~v~~~~~s~~  316 (416)
T 2pm9_A          284 DNTVLLWNPESA-----------------------------------------------EQLSQFPARGNWCFKTKFAPE  316 (416)
T ss_dssp             SSEEEEECSSSC-----------------------------------------------CEEEEEECSSSCCCCEEECTT
T ss_pred             CCCEEEeeCCCC-----------------------------------------------ccceeecCCCCceEEEEECCC
Confidence            999999988653                                               334456678899999999999


Q ss_pred             C-CEEEEEECCCcEEEecCCcCeeeeEecc-----------------------------------CcccEEEEEEeeCCC
Q psy3640         553 G-KLVLSGSQDTTCRLWSTESGECIQVLKA-----------------------------------HEDDVFSCGFNYNGD  596 (616)
Q Consensus       553 g-~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----------------------------------h~~~V~~l~~s~~~~  596 (616)
                      + ++|++++.||.|++|++.++........                                   |..++.+++|+|+|+
T Consensus       317 ~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  396 (416)
T 2pm9_A          317 APDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK  396 (416)
T ss_dssp             CTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE
T ss_pred             CCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe
Confidence            8 7999999999999999987764432211                                   667788999999999


Q ss_pred             EEEEeeCCCcEEEcccCCCC
Q psy3640         597 TIITASKDNTCCIWRSMNRD  616 (616)
Q Consensus       597 ~l~t~s~Dg~i~vW~~~~~e  616 (616)
                      +|++++.||+|+||++.+++
T Consensus       397 ~la~~~~d~~v~~w~~~~~~  416 (416)
T 2pm9_A          397 LVQITPDGKGVSITNPKISG  416 (416)
T ss_dssp             EECBCTTSSCBCCBCCCCC-
T ss_pred             EEEEeCCCCeEEEEEeccCC
Confidence            99999999999999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.1e-40  Score=340.23  Aligned_cols=293  Identities=25%  Similarity=0.442  Sum_probs=253.7

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCC------------------cEEEEEEcCCCCEE-E
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQN------------------VVYAVAFSEPYGCL-T  245 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~------------------~I~~l~fs~~~~ll-s  245 (616)
                      +|...|++++|+|+|++||+|+ +++++||++.+++.+..+..|..                  .|.+++|+|+++++ +
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 68999999999999888876542                  49999999999855 8


Q ss_pred             EECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--eeeEEEcC-CC
Q psy3640         246 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--SAEVTFSP-DQ  322 (616)
Q Consensus       246 ~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~-~~  322 (616)
                      ++.|++|++||+.+++.+..+.+|...|.+++|+ |+++.|++++.|++|++||+.++++...+..+  ...++++| ++
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~  219 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG  219 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence            9999999999999999999999999999999999 88999999999999999999999888776543  34568999 89


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEe-------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640         323 STFCSCSMDHTARIFNTNSGQEMHTL-------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       323 ~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      .++++++.||.|++||+++++.+..+       .+|...|.+++|+|++++|++|+.|+.|++||++.......    ..
T Consensus       220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~----~~  295 (393)
T 1erj_A          220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD----SK  295 (393)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccc----cc
Confidence            99999999999999999999887776       57899999999999999999999999999999974321110    00


Q ss_pred             cccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC------CCCEEEE
Q psy3640         396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY------SGSKLAT  469 (616)
Q Consensus       396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~------~~~~l~~  469 (616)
                      ..........+.+|...|.++++++++.++++|+.|+.|++||.++++.+..+.+|...|.+++|++      ++++|++
T Consensus       296 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s  375 (393)
T 1erj_A          296 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT  375 (393)
T ss_dssp             -----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             CCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence            1112345667789999999999999999999999999999999999999999999999999999986      6789999


Q ss_pred             EeCCCcEEEEecCC
Q psy3640         470 ASSDQTANLWTVGG  483 (616)
Q Consensus       470 ~~~dg~i~iwd~~~  483 (616)
                      ++.||+|++|++..
T Consensus       376 gs~Dg~i~iW~~~~  389 (393)
T 1erj_A          376 GSGDCKARIWKYKK  389 (393)
T ss_dssp             EETTSEEEEEEEEE
T ss_pred             ECCCCcEEECcccc
Confidence            99999999999854

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.7e-41  Score=336.00  Aligned_cols=289  Identities=26%  Similarity=0.400  Sum_probs=244.7

Q ss_pred             hhhhhheecccCCcceEEEEE-----CC-CCCEEEEEECCCcEEEEECCCC-------cEEEEEeccCCcEEEEEEcCCC
Q psy3640         175 QRYEKFKMLKSHLLPLTNITF-----DK-FGTRCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFSEPY  241 (616)
Q Consensus       175 ~~~~~~~~l~~h~~~i~~v~~-----s~-~g~~lasgs~dg~i~iwd~~~~-------~~~~~~~~h~~~I~~l~fs~~~  241 (616)
                      ..+.+...+++|..+|++++|     ++ ++++||+|+.|++|++||+.++       .....+.+|...|.+++|+|++
T Consensus         9 ~~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~   88 (343)
T 2xzm_R            9 IQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred             eEeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence            345567789999999999999     77 9999999999999999998753       4567889999999999999999


Q ss_pred             CEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---ec---ee
Q psy3640         242 GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GH---SA  314 (616)
Q Consensus       242 ~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~---~~  314 (616)
                      .++ +++.|++|++||+.+++.+..+.+|...|.+++|+ |+++++++++.|++|++||+... ......   +|   ..
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~  166 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS  166 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence            855 99999999999999999999999999999999999 88999999999999999999743 332222   33   34


Q ss_pred             eEEEcCCC----------CEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccc
Q psy3640         315 EVTFSPDQ----------STFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQ  384 (616)
Q Consensus       315 ~v~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~  384 (616)
                      .++|+|++          .++++++.||.|++|| ...+....+.+|...|.+++|+|++++|++|+.||.|++||+.. 
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~-  244 (343)
T 2xzm_R          167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN-  244 (343)
T ss_dssp             EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC-
T ss_pred             eeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC-
Confidence            56788876          7999999999999999 45677788899999999999999999999999999999999852 


Q ss_pred             cCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE--Eee-----------cC
Q psy3640         385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY--TLK-----------NH  451 (616)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~  451 (616)
                                    ...+...+ .+...|.+++|+|++.+++++ .|+.+++||+.+++...  .+.           +|
T Consensus       245 --------------~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (343)
T 2xzm_R          245 --------------LTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK  308 (343)
T ss_dssp             --------------CSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred             --------------Ccccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence                          12222222 345579999999999887755 57789999998765433  333           57


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGG  483 (616)
Q Consensus       452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  483 (616)
                      ...|.+++|+|++++|++|+.||.|++|++.+
T Consensus       309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          309 NPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             CCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             CCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            78899999999999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.7e-41  Score=336.07  Aligned_cols=286  Identities=15%  Similarity=0.138  Sum_probs=225.2

Q ss_pred             ceeeEEEcCCCCEEEEEeCCCcEEEEECC-------C----CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEe
Q psy3640         312 HSAEVTFSPDQSTFCSCSMDHTARIFNTN-------S----GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD  380 (616)
Q Consensus       312 ~~~~v~~~~~~~~l~~~~~dg~i~i~d~~-------~----~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd  380 (616)
                      +...++|+|||.++++++ |+++++||..       .    .........+...|.+++|+|++ .+++|+.||+|++||
T Consensus        32 ~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd  109 (344)
T 4gqb_B           32 QLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWE  109 (344)
T ss_dssp             EEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEe
Confidence            344555666666655554 4444444411       0    11112223366789999999985 788999999999999


Q ss_pred             cccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640         381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF  460 (616)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  460 (616)
                      +.....            .........+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.+++|
T Consensus       110 ~~~~~~------------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~  177 (344)
T 4gqb_B          110 LDENET------------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA  177 (344)
T ss_dssp             ECTTSS------------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ccCCCc------------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEe
Confidence            973210            11122345589999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEee
Q psy3640         461 DYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYS-GSKLATASSDQTAKLWTVGGAVELLQTFY  538 (616)
Q Consensus       461 ~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  538 (616)
                      +|++. ++++++.|++|++||+...........  ......+.+++|+|+ +.++++|+.||.|++||++++ +.+..+.
T Consensus       178 ~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~  254 (344)
T 4gqb_B          178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC--SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST-SCVLSSA  254 (344)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTSSSCEEECC------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEEEE
T ss_pred             cCCCCCceeeeccccccccccccccceeeeeec--ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC-cEEEEEc
Confidence            99885 789999999999999987644332211  122234778999985 568899999999999999884 6778899


Q ss_pred             ccccCEEEEEEecCC-CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCC-EEEEeeCCCcEEEcccCCC
Q psy3640         539 GHSNEVSKVSFHPTG-KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGD-TIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       539 ~h~~~v~~l~~spdg-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~t~s~Dg~i~vW~~~~~  615 (616)
                      +|...|++++|+|++ ++|++|+.|++|+|||+.+++++ .+.+|.+.|++++|+|+++ +|+++|.||+|++|++.++
T Consensus       255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            999999999999998 58999999999999999998865 5789999999999999986 6779999999999999764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-40  Score=339.02  Aligned_cols=293  Identities=24%  Similarity=0.415  Sum_probs=251.8

Q ss_pred             CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec---------------------eeeEEEcCCCCEEE
Q psy3640         268 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH---------------------SAEVTFSPDQSTFC  326 (616)
Q Consensus       268 ~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------------------~~~v~~~~~~~~l~  326 (616)
                      +|...|.+++|+ |++++|++++ ++.+++|++.+++.+..+..+                     ...++|+|++++++
T Consensus        62 ~h~~~V~~v~fs-pdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFS-NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEEC-TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEEC-CCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            599999999999 8899999976 689999999999888777543                     34578999999999


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL  406 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (616)
                      +|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++                .......+
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~----------------~~~~~~~~  203 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR----------------TGQCSLTL  203 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----------------TTEEEEEE
T ss_pred             EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC----------------CCeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999997                44444444


Q ss_pred             ecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640         407 TGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTL-------KNHEDEVLDIAFDYSGSKLATASSDQTANL  478 (616)
Q Consensus       407 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~i  478 (616)
                      . +...+.+++++| ++.++++|+.|+.|++||++++..+..+       .+|...|.+++|+|++++|++++.|+.|++
T Consensus       204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~  282 (393)
T 1erj_A          204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL  282 (393)
T ss_dssp             E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence            3 566789999999 8999999999999999999999887776       568899999999999999999999999999


Q ss_pred             EecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640         479 WTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS  558 (616)
Q Consensus       479 wd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s  558 (616)
                      ||+...........                                   .....+...+.+|...|.+++|+|++++|++
T Consensus       283 wd~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  327 (393)
T 1erj_A          283 WNLQNANNKSDSKT-----------------------------------PNSGTCEVTYIGHKDFVLSVATTQNDEYILS  327 (393)
T ss_dssp             EEC--------------------------------------------------CEEEEEECCSSCEEEEEECGGGCEEEE
T ss_pred             EECCCCCCcccccC-----------------------------------CCCCcceEEEecccCcEEEEEECCCCCEEEE
Confidence            99976422110000                                   0002344566789999999999999999999


Q ss_pred             EECCCcEEEecCCcCeeeeEeccCcccEEEEEEee------CCCEEEEeeCCCcEEEcccCC
Q psy3640         559 GSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY------NGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       559 ~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~------~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      |+.|+.|++||..+++++..+.+|.+.|.+++|++      ++++|+||+.||+|++|++..
T Consensus       328 gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          328 GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99999999999999999999999999999999986      678999999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-40  Score=326.20  Aligned_cols=289  Identities=33%  Similarity=0.543  Sum_probs=253.6

Q ss_pred             ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEE
Q psy3640         261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIF  337 (616)
Q Consensus       261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~  337 (616)
                      .....+.+|...|++++|+ |+++++++++.||.|++|+..+++....+.+|...   ++|+|+++++++++.||.|++|
T Consensus        14 ~~~~~~~gh~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             EEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eeEEEEcccCCcEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            4457788999999999999 88999999999999999999999999888877654   5899999999999999999999


Q ss_pred             ECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEE
Q psy3640         338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL  417 (616)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  417 (616)
                      |+.+++.+..+.+|...|.+++|+|+++++++|+.|+.|++||++                .......+..|..++.+++
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~----------------~~~~~~~~~~~~~~v~~~~  156 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK----------------TGKCLKTLPAHSDPVSAVH  156 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT----------------TCCEEEEECCCSSCEEEEE
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----------------CCEEEEEecCCCCcEEEEE
Confidence            999999999999999999999999999999999999999999997                6677888889999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCC
Q psy3640         418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSN  496 (616)
Q Consensus       418 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  496 (616)
                      |+|+++++++++.||.|++||+++++.+..+. .+...+..++|+|+++++++++.|+.|++||+...            
T Consensus       157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------------  224 (312)
T 4ery_A          157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG------------  224 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT------------
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC------------
Confidence            99999999999999999999999988777664 34567888888888888888888888888887654            


Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCE---EEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640         497 EVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV---SKVSFHPTGKLVLSGSQDTTCRLWSTESG  573 (616)
Q Consensus       497 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v---~~l~~spdg~~l~s~s~dg~i~iwd~~~~  573 (616)
                                                         +....+.+|...+   ......+++++|++|+.||.|++||+.++
T Consensus       225 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          225 -----------------------------------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             -----------------------------------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             -----------------------------------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence                                               2233334444332   22223467889999999999999999999


Q ss_pred             eeeeEeccCcccEEEEEEeeCCCEEEEee--CCCcEEEcccC
Q psy3640         574 ECIQVLKAHEDDVFSCGFNYNGDTIITAS--KDNTCCIWRSM  613 (616)
Q Consensus       574 ~~~~~~~~h~~~V~~l~~s~~~~~l~t~s--~Dg~i~vW~~~  613 (616)
                      +.+..+.+|.+.|.+++|+|++++|++++  .|++|++|+..
T Consensus       270 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          270 EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999999999999999999999997  69999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-40  Score=329.92  Aligned_cols=295  Identities=27%  Similarity=0.373  Sum_probs=237.6

Q ss_pred             hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEEEEE-ec-cCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640         177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG--HEICTY-RG-HQNVVYAVAFSEPYGCL-TGSYDRT  251 (616)
Q Consensus       177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~-~~-h~~~I~~l~fs~~~~ll-s~s~d~~  251 (616)
                      +++.+.+++|..+|.+++|+|+  +||+|+.||+|++||+.++  .....+ .+ |...|.+++|+|++.++ +++.|++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3456789999999999999997  9999999999999999875  445556 44 99999999999999955 8999999


Q ss_pred             EEEEeCCC-------CceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc----ceeEEeeecee---eEE
Q psy3640         252 CKLWDIKS-------GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE----ECIQTYRGHSA---EVT  317 (616)
Q Consensus       252 I~iwd~~~-------~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~---~v~  317 (616)
                      |++||+..       .+.+..+.+|...|.+++|+ |++++|++++.|++|++||+...    +++..+.+|..   .++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            99999853       35677889999999999999 88999999999999999999432    45667777754   458


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640         318 FSPDQSTFCSCSMDHTARIFNTNSG--QEMHTLKAHTGPVISLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       318 ~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      |+|++.+|++++.|+.|++||..++  +.+..+.+|...|.+++|+|+  +..|++|+.|++|++||+........    
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~----  236 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ----  236 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC----
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc----
Confidence            9999999999999999999998876  578889999999999999998  67999999999999999874311100    


Q ss_pred             cccccCCcceEEEec-CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe--EEEE-eecCCC-CEEEEEEcC--CCCE
Q psy3640         394 STYRASHKPIHILTG-HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC--CFYT-LKNHED-EVLDIAFDY--SGSK  466 (616)
Q Consensus       394 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~~~--~~~~  466 (616)
                          ........+.. |...|.+++|++++ .+++++.||.|++||..++.  .... ...|.. .|.+++|+|  ++++
T Consensus       237 ----~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~  311 (330)
T 2hes_X          237 ----QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTI  311 (330)
T ss_dssp             ----EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CC
T ss_pred             ----ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceE
Confidence                00122333444 88999999999655 89999999999999998874  3333 356776 899999999  6899


Q ss_pred             EEEEeCCCcEEEEecCC
Q psy3640         467 LATASSDQTANLWTVGG  483 (616)
Q Consensus       467 l~~~~~dg~i~iwd~~~  483 (616)
                      |++++.||.|++|++..
T Consensus       312 las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          312 LATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEETTSEEEEEEC--
T ss_pred             EEEecCCCcEEEEEecc
Confidence            99999999999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.2e-40  Score=331.80  Aligned_cols=288  Identities=20%  Similarity=0.332  Sum_probs=242.7

Q ss_pred             eEEEeeCCCCcEEEEEE-----eCCCCCEEEEEECCCeEEEEeCCCc-------ceeEEeeeceee---EEEcCCCCEEE
Q psy3640         262 EICTYRGHQNVVYAVAF-----SEPYGDKILTGSFDKTLKLWASAKE-------ECIQTYRGHSAE---VTFSPDQSTFC  326 (616)
Q Consensus       262 ~~~~~~~h~~~V~~l~~-----~~~~~~~l~s~s~dg~i~iwd~~~~-------~~~~~~~~~~~~---v~~~~~~~~l~  326 (616)
                      ....+.+|.+.|++++|     +++++.+|++|+.|++|++||+.+.       .....+.+|...   ++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            45678999999999999     6558999999999999999998754       345667777654   58999999999


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL  406 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (616)
                      +++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+..                 ......
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-----------------~~~~~~  155 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-----------------ECKFSS  155 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-----------------CEEEEC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-----------------Cceeee
Confidence            999999999999999999999999999999999999999999999999999999851                 111111


Q ss_pred             ---ecCccceeEEEEccCC----------CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640         407 ---TGHSQEISNCLFNFSN----------SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD  473 (616)
Q Consensus       407 ---~~~~~~i~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  473 (616)
                         ..|...+.+++|+|++          .++++++.||.|++|| ........+..|...|.+++|+|++++|++++.|
T Consensus       156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~d  234 (343)
T 2xzm_R          156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD  234 (343)
T ss_dssp             CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCC
Confidence               2678889999999987          7999999999999999 4567778888999999999999999999999999


Q ss_pred             CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640         474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG  553 (616)
Q Consensus       474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg  553 (616)
                      |.|++||+......                                              ...+ .+...|.+++|+|++
T Consensus       235 g~v~iwd~~~~~~~----------------------------------------------~~~~-~~~~~v~~v~~sp~~  267 (343)
T 2xzm_R          235 KKLLIWDILNLTYP----------------------------------------------QREF-DAGSTINQIAFNPKL  267 (343)
T ss_dssp             CEEEEEESSCCSSC----------------------------------------------SEEE-ECSSCEEEEEECSSS
T ss_pred             CeEEEEECCCCccc----------------------------------------------ceee-cCCCcEEEEEECCCC
Confidence            99999998432110                                              0111 234569999999999


Q ss_pred             CEEEEEECCCcEEEecCCcCeeee--Eec-----------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         554 KLVLSGSQDTTCRLWSTESGECIQ--VLK-----------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       554 ~~l~s~s~dg~i~iwd~~~~~~~~--~~~-----------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      ++++++ .|+.|++|++.+++...  .+.           +|...|.+++|+|+|++|++|+.||+|++|++.+.
T Consensus       268 ~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          268 QWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             CEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence            887755 57789999998876544  443           68889999999999999999999999999998753

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.7e-41  Score=344.41  Aligned_cols=322  Identities=17%  Similarity=0.243  Sum_probs=275.3

Q ss_pred             EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee--eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q psy3640         273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA  350 (616)
Q Consensus       273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  350 (616)
                      +++++|+ |+++++++++.|+.+++||..+++....+..+..  ...++|+++++++++.||.|++||+.+++....+..
T Consensus        59 ~~~~~~s-~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  137 (420)
T 3vl1_A           59 GKGNTFE-KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA  137 (420)
T ss_dssp             CTTCEEE-EEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred             ccceeee-ecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence            4578899 8899999999999999999998877666555432  236899999999999999999999999999888889


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC
Q psy3640         351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL  430 (616)
Q Consensus       351 ~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  430 (616)
                      |...|.+++|+|++++|++++.|+.|++||+.                .......+.+|...|.+++|+|+++.+++++.
T Consensus       138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~----------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  201 (420)
T 3vl1_A          138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVK----------------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASL  201 (420)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETT----------------TCCCCEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred             ccCccEEEEECCCCCEEEEEeCCCeEEEEeCC----------------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC
Confidence            99999999999999999999999999999998                66677888999999999999999999999999


Q ss_pred             CCcEEEEeCCCCeEEEEeec---CCCCEEEEE---------------------EcCCCCEEEEEeCCCcEEEEecCCcee
Q psy3640         431 DGTAKLWDVRTMCCFYTLKN---HEDEVLDIA---------------------FDYSGSKLATASSDQTANLWTVGGAVE  486 (616)
Q Consensus       431 dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~---------------------~~~~~~~l~~~~~dg~i~iwd~~~~~~  486 (616)
                      ||.|++||+++++.+..+..   +...+.+++                     |+|+++++++++.||.|++||+.....
T Consensus       202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~  281 (420)
T 3vl1_A          202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ  281 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred             CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce
Confidence            99999999999999988875   334455544                     578899999999999999999988755


Q ss_pred             eeeEEeccCCCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceEEeEEeec-cccCEEEEEEecCCCEEEEEECCCc
Q psy3640         487 LLQTFYGHSNEVSKVLDIAFDYSGS-KLATASSDQTAKLWTVGGAVELLQTFYG-HSNEVSKVSFHPTGKLVLSGSQDTT  564 (616)
Q Consensus       487 ~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-h~~~v~~l~~spdg~~l~s~s~dg~  564 (616)
                      .......+.   ..+.+++|+|++. +|++|+.||.|++||+.+....+..+.. |...|+++. +|++++|++++.||.
T Consensus       282 ~~~~~~~~~---~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          282 TIQLPSKFT---CSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVY-FAAGALFVSSGFDTS  357 (420)
T ss_dssp             EEEECCTTS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEE-EETTEEEEEETTTEE
T ss_pred             eEEcccccC---CCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEE-eCCCCEEEEecCCcc
Confidence            554443333   4588999999999 9999999999999999886555666666 667788885 467889999999999


Q ss_pred             EEEecCCcC---------eeeeEeccCcccEEEEEEeeCCC---EEEEeeCCCcEEEcccCCC
Q psy3640         565 CRLWSTESG---------ECIQVLKAHEDDVFSCGFNYNGD---TIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       565 i~iwd~~~~---------~~~~~~~~h~~~V~~l~~s~~~~---~l~t~s~Dg~i~vW~~~~~  615 (616)
                      |++|++...         .....+.+|.+.|.+++|+|+++   .|++++.+|.+.+|++.++
T Consensus       358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~~  420 (420)
T 3vl1_A          358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP  420 (420)
T ss_dssp             EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC-
T ss_pred             EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccCC
Confidence            999998773         22334567889999999999999   8888889999999999764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-40  Score=343.77  Aligned_cols=343  Identities=15%  Similarity=0.192  Sum_probs=287.9

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEEeCCCCceEEEe
Q psy3640         188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLWDIKSGHEICTY  266 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iwd~~~~~~~~~~  266 (616)
                      ..+++++|+|+|++|++|+.||.|++||+.+++....+..| ..+....|++++.+ ++++.|+.|++||+.+++....+
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  135 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID  135 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence            44568999999999999999999999999988776666666 45556678999885 48999999999999999999888


Q ss_pred             eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECCCCc
Q psy3640         267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSGQ  343 (616)
Q Consensus       267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~~~~  343 (616)
                      .+|...|.+++|+ |++++|++++.|+.|++||+.+++.+..+.+|...   ++|+|++..+++++.||.|++||+++++
T Consensus       136 ~~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          136 QAHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            9999999999999 78999999999999999999999999999877654   5899999999999999999999999999


Q ss_pred             eeEEeec---CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640         344 EMHTLKA---HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF  420 (616)
Q Consensus       344 ~~~~~~~---~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  420 (616)
                      .+..+..   |...+.++++.|.+...                                     ....+...+.+++|+|
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------------------~~~~~~~~v~~~~~s~  257 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------------------LHEISTSKKNNLEFGT  257 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSS-------------------------------------CGGGCCCCCCTTCSSC
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcce-------------------------------------eeecccCcccceEEcC
Confidence            9988874   56778888887653211                                     1123456678889999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEee-cCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCe
Q psy3640         421 SNSMIASSSLDGTAKLWDVRTMCCFYTLK-NHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEV  498 (616)
Q Consensus       421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  498 (616)
                      +++++++++.||.|++||+++++....+. .|...|.+++|+|++. +|++++.||.|++||+.+.......+..+..  
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~--  335 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG--  335 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTT--
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCC--
Confidence            99999999999999999999998777765 4788999999999999 9999999999999999887555555555332  


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce--------EEeEEeeccccCEEEEEEecCCC---EEEEEECCCcEEE
Q psy3640         499 SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV--------ELLQTFYGHSNEVSKVSFHPTGK---LVLSGSQDTTCRL  567 (616)
Q Consensus       499 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~h~~~v~~l~~spdg~---~l~s~s~dg~i~i  567 (616)
                      ..+..+. .+++++|++++.|+.|++|++....        .....+..|.+.|.+++|+|+++   .+++++.+|.+.+
T Consensus       336 ~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~  414 (420)
T 3vl1_A          336 TPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCAL  414 (420)
T ss_dssp             SCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEE
T ss_pred             CCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEE
Confidence            2355554 4578899999999999999987521        11234567889999999999999   7888888999999


Q ss_pred             ecCCc
Q psy3640         568 WSTES  572 (616)
Q Consensus       568 wd~~~  572 (616)
                      |++++
T Consensus       415 ~~~~~  419 (420)
T 3vl1_A          415 YNLSN  419 (420)
T ss_dssp             EESCC
T ss_pred             EeccC
Confidence            99864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-38  Score=318.51  Aligned_cols=292  Identities=26%  Similarity=0.404  Sum_probs=251.7

Q ss_pred             hhhhhhheecccCCcceEEEEECCC-CCEEEEEECCCcEEEEECCCC-----cEEEEEeccCCcEEEEEEcCCCCEE-EE
Q psy3640         174 AQRYEKFKMLKSHLLPLTNITFDKF-GTRCLTGSYDRTCKLWDIKSG-----HEICTYRGHQNVVYAVAFSEPYGCL-TG  246 (616)
Q Consensus       174 ~~~~~~~~~l~~h~~~i~~v~~s~~-g~~lasgs~dg~i~iwd~~~~-----~~~~~~~~h~~~I~~l~fs~~~~ll-s~  246 (616)
                      .++..+..+|+||.++|++|+|+|+ +++||||+.||+|+|||+.+.     .+...+.+|...|.+++|+|++.++ ++
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            3445566789999999999999998 689999999999999998765     3567889999999999999999955 99


Q ss_pred             ECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE-eeece---eeEEEcCC-
Q psy3640         247 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-YRGHS---AEVTFSPD-  321 (616)
Q Consensus       247 s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~---~~v~~~~~-  321 (616)
                      +.|+.|++|+............+...+....++ +++..+++++.|+.+++||......... ..+|.   ..++++++ 
T Consensus       105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred             cccccceEEeecccceeeeecCCCCceeEEEEe-ecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence            999999999999999999999999999999998 8899999999999999999887654433 33333   34567765 


Q ss_pred             -CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640         322 -QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       322 -~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                       ...+++++.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.||.|++||++                ..
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~----------------~~  247 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN----------------EG  247 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT----------------TT
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec----------------cC
Confidence             4578899999999999999999999999999999999999999999999999999999997                55


Q ss_pred             cceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee---------cCCCCEEEEEEcCCCCEEEEEe
Q psy3640         401 KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK---------NHEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       401 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~~~~~~~l~~~~  471 (616)
                      .++..+.. ...+..++|+|++.++ +++.|+.|++||++++..+..+.         .|...|++++|+|++++|++++
T Consensus       248 ~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          248 KHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred             ceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence            55655554 4679999999987655 55568999999999987776654         5778999999999999999999


Q ss_pred             CCCcEEEEecCCc
Q psy3640         472 SDQTANLWTVGGA  484 (616)
Q Consensus       472 ~dg~i~iwd~~~~  484 (616)
                      .||.|++||+.++
T Consensus       326 ~Dg~v~iW~~~tG  338 (340)
T 4aow_A          326 TDNLVRVWQVTIG  338 (340)
T ss_dssp             TTSCEEEEEEEC-
T ss_pred             CCCEEEEEeCCCc
Confidence            9999999999765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-38  Score=320.25  Aligned_cols=288  Identities=18%  Similarity=0.277  Sum_probs=262.2

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEEe
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLWD  256 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iwd  256 (616)
                      .....+.+|..+|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+ ++++.|+.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            344668999999999999999999999999999999999999999999999999999999999985 5899999999999


Q ss_pred             CCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECC-----CeEEEEeCCCccee-----------EEeee-----ceee
Q psy3640         257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD-----KTLKLWASAKEECI-----------QTYRG-----HSAE  315 (616)
Q Consensus       257 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~-----------~~~~~-----~~~~  315 (616)
                      +.+++.+..+. |...|.+++|+ +++..+++++.+     +.|++||+..+...           ..+..     ....
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             CCCCcEEEEee-cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            99999998888 88999999999 889999999999     99999998776432           22222     3445


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640         316 VTFSPDQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       316 v~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                      ++|+|+++.+++++.+|.|++||+.+ ++.+..+..|...|.+++|+|++++|++++.|+.|++||++            
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~------------  248 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS------------  248 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT------------
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC------------
Confidence            68999999999999999999999998 78888999999999999999999999999999999999997            


Q ss_pred             ccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC--------------cEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640         395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG--------------TAKLWDVRTMCCFYTLKNHEDEVLDIAF  460 (616)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~  460 (616)
                          .......+. +...+..++|+|++..+++++.++              .+++||..+++.+..+..|...|.+++|
T Consensus       249 ----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~  323 (369)
T 3zwl_B          249 ----TLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAI  323 (369)
T ss_dssp             ----TCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             ----CCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEE
Confidence                555555555 778899999999999999999988              8999999999999999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         461 DYSGSKLATASSDQTANLWTVGGA  484 (616)
Q Consensus       461 ~~~~~~l~~~~~dg~i~iwd~~~~  484 (616)
                      +|++++|++++.||.|++|++...
T Consensus       324 s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          324 SPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             CTTSSEEEEEETTSEEEEEEECHH
T ss_pred             CCCCCEEEEEcCCCeEEEEECccc
Confidence            999999999999999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-38  Score=316.75  Aligned_cols=293  Identities=25%  Similarity=0.368  Sum_probs=249.4

Q ss_pred             CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc-----eeEEeeeceee---EEEcCCCCEEEEEeC
Q psy3640         259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-----CIQTYRGHSAE---VTFSPDQSTFCSCSM  330 (616)
Q Consensus       259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~~~~~~~~~---v~~~~~~~~l~~~~~  330 (616)
                      +.+...+|++|.+.|++++|+|.++++|+||+.|++|++||+.+.+     +...+.+|...   ++|+|+++++++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            3345568999999999999995567999999999999999987654     45566666554   589999999999999


Q ss_pred             CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640         331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS  410 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (616)
                      |+.|++|+............+...+....++++++.+++++.|+.+++||...               .........+|.
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~---------------~~~~~~~~~~~~  171 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG---------------VCKYTVQDESHS  171 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS---------------CEEEEECSSSCS
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC---------------CceEEEEecccc
Confidence            99999999999999988888999999999999999999999999999999862               223334456788


Q ss_pred             cceeEEEEccCC--CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeee
Q psy3640         411 QEISNCLFNFSN--SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL  488 (616)
Q Consensus       411 ~~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  488 (616)
                      ..+..++|++++  .++++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|++++.||.|++||+...    
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~----  247 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG----  247 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT----
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC----
Confidence            899999998764  57889999999999999999999999999999999999999999999999999999998764    


Q ss_pred             eEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEe
Q psy3640         489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW  568 (616)
Q Consensus       489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iw  568 (616)
                                                                 ..+..+. +...|.+++|+|++.+ ++++.|+.|++|
T Consensus       248 -------------------------------------------~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d~~i~iw  282 (340)
T 4aow_A          248 -------------------------------------------KHLYTLD-GGDIINALCFSPNRYW-LCAATGPSIKIW  282 (340)
T ss_dssp             -------------------------------------------EEEEEEE-CSSCEEEEEECSSSSE-EEEEETTEEEEE
T ss_pred             -------------------------------------------ceeeeec-CCceEEeeecCCCCce-eeccCCCEEEEE
Confidence                                                       1222222 3467899999998754 456678999999


Q ss_pred             cCCcCeeeeEec---------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         569 STESGECIQVLK---------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       569 d~~~~~~~~~~~---------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      |++++..+..+.         +|...|++++|+|++++|++|+.||+|+|||+.+.
T Consensus       283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            999887776553         68889999999999999999999999999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-40  Score=343.05  Aligned_cols=363  Identities=16%  Similarity=0.219  Sum_probs=285.4

Q ss_pred             EECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcC-CCC-EEEEECCCcEEEEeCCC---Cc---eEE
Q psy3640         194 TFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSE-PYG-CLTGSYDRTCKLWDIKS---GH---EIC  264 (616)
Q Consensus       194 ~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~-~~~-lls~s~d~~I~iwd~~~---~~---~~~  264 (616)
                      .|+|+++.+++++      .|+ .+++.+..+ .+|.+.|++++|+| ++. +++++.||+|++||+.+   +.   ...
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            3788888888766      387 667888888 89999999999999 887 55999999999999876   43   233


Q ss_pred             EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC---CcceeEEeeece---------------eeEE--EcCCCCE
Q psy3640         265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA---KEECIQTYRGHS---------------AEVT--FSPDQST  324 (616)
Q Consensus       265 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~---------------~~v~--~~~~~~~  324 (616)
                      .+ +|...|.+++|+ ++++.|++++.||.|++||+.   +++......++.               ..+.  +++++..
T Consensus       107 ~~-~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (437)
T 3gre_A          107 TY-DCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL  184 (437)
T ss_dssp             EE-ECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred             ec-cCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence            44 499999999999 789999999999999999995   565555444331               1112  5678999


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeec--CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcc
Q psy3640         325 FCSCSMDHTARIFNTNSGQEMHTLKA--HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP  402 (616)
Q Consensus       325 l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  402 (616)
                      +++++.||.|++||+++++.+..+..  |...|.+++|+|++++|++|+.||.|++||++                ...+
T Consensus       185 l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~----------------~~~~  248 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR----------------FNVL  248 (437)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT----------------TTEE
T ss_pred             EEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC----------------CccE
Confidence            99999999999999999999999988  89999999999999999999999999999998                6666


Q ss_pred             eEEEe-cCccceeEEEEc----cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640         403 IHILT-GHSQEISNCLFN----FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN  477 (616)
Q Consensus       403 ~~~~~-~~~~~i~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  477 (616)
                      +..+. .|...|.+++++    +++.++++|+.||.|++||+++++++..+..|...+..+.|+|+++.+    .+..  
T Consensus       249 ~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~--  322 (437)
T 3gre_A          249 IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL----EELN--  322 (437)
T ss_dssp             EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG----GGCC--
T ss_pred             EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc----ccce--
Confidence            66665 788899999665    457799999999999999999999999999999999988999887655    1111  


Q ss_pred             EEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccc---cCEEEEEEecCCC
Q psy3640         478 LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHS---NEVSKVSFHPTGK  554 (616)
Q Consensus       478 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---~~v~~l~~spdg~  554 (616)
                                   +.+ ......|.+++|+ ++++|++|+.|+.|++||+.++ +....+.+|.   ..+....+++...
T Consensus       323 -------------~~~-~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (437)
T 3gre_A          323 -------------FCG-IRSLNALSTISVS-NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLT  386 (437)
T ss_dssp             -------------CCC-CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEE
T ss_pred             -------------ecc-cccCCceEEEEEC-CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceE
Confidence                         111 1123457788999 7899999999999999999885 4455566653   3456667777765


Q ss_pred             EEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeC--CCEEEEeeCCCcEEEcc
Q psy3640         555 LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN--GDTIITASKDNTCCIWR  611 (616)
Q Consensus       555 ~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~--~~~l~t~s~Dg~i~vW~  611 (616)
                      +++..        |+...+........|.+.|++++|+++  +.+|++|+.||.|+||+
T Consensus       387 ~~~~~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          387 MLLRK--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEE--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEEe--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            55554        445555666677789999999999998  77999999999999996

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-40  Score=349.06  Aligned_cols=341  Identities=9%  Similarity=0.032  Sum_probs=249.7

Q ss_pred             CCcceEEEEECCCC---------CEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640         186 HLLPLTNITFDKFG---------TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRTCKLW  255 (616)
Q Consensus       186 h~~~i~~v~~s~~g---------~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw  255 (616)
                      +.++|.+|+|+|++         ++||+|+.++..                       -..+|++.+ ++++.|++|+||
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iW  188 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIF  188 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEE
Confidence            68899999999987         799999876420                       013577774 489999999999


Q ss_pred             eCCCCceE----EEeeCCCCcEEEEEEeCC-----CCCEEEEEECCCeEEEEeCCCcce-----------eEEeeece--
Q psy3640         256 DIKSGHEI----CTYRGHQNVVYAVAFSEP-----YGDKILTGSFDKTLKLWASAKEEC-----------IQTYRGHS--  313 (616)
Q Consensus       256 d~~~~~~~----~~~~~h~~~V~~l~~~~~-----~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~~~~--  313 (616)
                      |+.+++..    ..+.+|.+.|.+++|+|.     ++.+||+++.||+|++||+.++..           ...+.+|.  
T Consensus       189 d~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~  268 (524)
T 2j04_B          189 KMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL  268 (524)
T ss_dssp             EEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC
T ss_pred             EccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC
Confidence            99887642    446778899999999953     367999999999999999987642           23455554  


Q ss_pred             -eeEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEeecCCcCEEEE--EEcCCC-CEEEEEECCCcEEEEecccccCCc
Q psy3640         314 -AEVTFSPDQSTFCSCSMDHTARIFNTNSGQ-EMHTLKAHTGPVISL--QFSSDR-NMLITGSFDSSIVVWDIQYQFGTR  388 (616)
Q Consensus       314 -~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l--~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~  388 (616)
                       ..++|+++ ..|++|+.||+|++||++++. ....+.+|...|.++  +|+|++ ++|++++.|++|++||++      
T Consensus       269 v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~------  341 (524)
T 2j04_B          269 ITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK------  341 (524)
T ss_dssp             EEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG------
T ss_pred             EEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC------
Confidence             34578886 489999999999999999764 456788999999999  578887 899999999999999997      


Q ss_pred             ccccccccccCCcceEEEecCcc--ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCE
Q psy3640         389 NAYAESTYRASHKPIHILTGHSQ--EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK  466 (616)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~  466 (616)
                                .......+.+|..  .+.+++|+|++..+++++.|++|++||++++.++..+.+|.+.|.+++|+|+++.
T Consensus       342 ----------~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~  411 (524)
T 2j04_B          342 ----------DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM  411 (524)
T ss_dssp             ----------GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCB
T ss_pred             ----------CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCe
Confidence                      4444444555543  4789999999999999999999999999999888889999999999999999999


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeEEecc--CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCE
Q psy3640         467 LATASSDQTANLWTVGGAVELLQTFYGH--SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV  544 (616)
Q Consensus       467 l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v  544 (616)
                      |++|+.||+|++|++...  ........  ......+..++|+|++..+.. ..  .+.+|+..........+.+|..+|
T Consensus       412 l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V  486 (524)
T 2j04_B          412 VLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINI  486 (524)
T ss_dssp             CEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSC
T ss_pred             EEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceE
Confidence            999999999999998653  21111100  011124678899999985532 22  233443332235677788999999


Q ss_pred             EEEEEecCCC---EEEEEECCCcEEEecCC
Q psy3640         545 SKVSFHPTGK---LVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       545 ~~l~~spdg~---~l~s~s~dg~i~iwd~~  571 (616)
                      .+++|+|+++   .+|+|+.||.|+||++.
T Consensus       487 ~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          487 TCTKWNETSAGGKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             CCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred             EEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence            9999999964   99999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-38  Score=325.88  Aligned_cols=288  Identities=18%  Similarity=0.227  Sum_probs=259.7

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc------EEEEEeccCCcEEEEEEcCC----C---C-E
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH------EICTYRGHQNVVYAVAFSEP----Y---G-C  243 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~------~~~~~~~h~~~I~~l~fs~~----~---~-l  243 (616)
                      ...+.+.+|..+|++++|+|  ++|++|+.||+|++||+.+++      .+..+.+|..+|.+++|+|+    +   . +
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            34577899999999999999  899999999999999999988      78899999999999999999    7   6 5


Q ss_pred             EEEECCCcEEEEeCCCCce-----EEEeeCC-----CCcEEEEEEeC---CCCCE-EEEEECCCeEEEEeCCC------c
Q psy3640         244 LTGSYDRTCKLWDIKSGHE-----ICTYRGH-----QNVVYAVAFSE---PYGDK-ILTGSFDKTLKLWASAK------E  303 (616)
Q Consensus       244 ls~s~d~~I~iwd~~~~~~-----~~~~~~h-----~~~V~~l~~~~---~~~~~-l~s~s~dg~i~iwd~~~------~  303 (616)
                      ++++.|+.|++||+.+++.     ...+..|     ...|.+++|++   ++++. +++++.||.|++||+.+      +
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  164 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  164 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence            5899999999999999987     8889988     59999999983   46788 99999999999999998      7


Q ss_pred             ceeE-----Eeee----------ceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec---C---CcCEEEEEEcC
Q psy3640         304 ECIQ-----TYRG----------HSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA---H---TGPVISLQFSS  362 (616)
Q Consensus       304 ~~~~-----~~~~----------~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~---~~~v~~l~~~~  362 (616)
                      +.+.     .+.+          ....++|+|++ .+++++.||.|++||+++++.+..+..   |   ...|.+++|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~  243 (397)
T 1sq9_A          165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  243 (397)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC
Confidence            6666     6633          34567899999 999999999999999999999999998   8   99999999999


Q ss_pred             CCCEEEEEECC---CcEEEEecccccCCcccccccccccCCcceEEEec-------------CccceeEEEEccCCCEEE
Q psy3640         363 DRNMLITGSFD---SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-------------HSQEISNCLFNFSNSMIA  426 (616)
Q Consensus       363 ~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~  426 (616)
                      ++++|++++.|   |.|++||++                ....+..+..             |...|.+++|+|++++|+
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  307 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETE----------------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  307 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETT----------------TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             CCCEEEEEecCCCCceEEEEECC----------------CCcccceeccCcccccccccccccCCcEEEEEECCCCCEEE
Confidence            99999999999   999999998                6667777777             999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEee------cC---------------CCCEEEEEEcCCC----------CEEEEEeCCCc
Q psy3640         427 SSSLDGTAKLWDVRTMCCFYTLK------NH---------------EDEVLDIAFDYSG----------SKLATASSDQT  475 (616)
Q Consensus       427 ~~~~dg~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~~~~~----------~~l~~~~~dg~  475 (616)
                      +++.||.|++||+++++.+..+.      .|               ...|.+++|+|++          ++|++++.||.
T Consensus       308 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          308 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred             EEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence            99999999999999999999999      78               8999999999998          79999999999


Q ss_pred             EEEEecCCc
Q psy3640         476 ANLWTVGGA  484 (616)
Q Consensus       476 i~iwd~~~~  484 (616)
                      |++|++.++
T Consensus       388 i~iw~~~~g  396 (397)
T 1sq9_A          388 IRWFREAGG  396 (397)
T ss_dssp             EEEEEEEC-
T ss_pred             EEEEEcCCC
Confidence            999998653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-37  Score=312.42  Aligned_cols=298  Identities=19%  Similarity=0.275  Sum_probs=255.4

Q ss_pred             eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEE
Q psy3640         262 EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFN  338 (616)
Q Consensus       262 ~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d  338 (616)
                      ....+.+|.+.|++++|+ +++++|++++.||.|++||+.+++.+..+.+|...   ++|+|+++++++++.||.|++||
T Consensus        24 ~~~~l~~h~~~v~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYN-KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEECCSSCEEEEEEC-TTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             ccEEEEEeeceEEEEEEc-CCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            345688999999999999 78999999999999999999999999999877654   48999999999999999999999


Q ss_pred             CCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEecccccCCcccccccccccCCcceEEEecCcc--
Q psy3640         339 TNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD-----SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ--  411 (616)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  411 (616)
                      +.+++.+..+. +...+.+++|+|+++++++++.+     +.|++||+..........     .....+...+..|..  
T Consensus       103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  176 (369)
T 3zwl_B          103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT-----KVSEEPIHKIITHEGLD  176 (369)
T ss_dssp             TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE-----EECSSCSEEEECCTTCC
T ss_pred             CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec-----ccccceeeeccCCcCcc
Confidence            99999998888 88999999999999999999999     999999997543221111     112344556666666  


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeE
Q psy3640         412 EISNCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQT  490 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  490 (616)
                      .+.+++|+|+++.+++++.||.|++||+++ ...+..+..|...|.+++|+|++++|++++.|+.|++||+.+....   
T Consensus       177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---  253 (369)
T 3zwl_B          177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL---  253 (369)
T ss_dssp             CEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---
T ss_pred             ceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee---
Confidence            899999999999999999999999999999 7888999999999999999999999999999999999998764211   


Q ss_pred             EeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCC-------
Q psy3640         491 FYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDT-------  563 (616)
Q Consensus       491 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg-------  563 (616)
                                                                  ..+. +...+..++|+|+++++++++.++       
T Consensus       254 --------------------------------------------~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  288 (369)
T 3zwl_B          254 --------------------------------------------KKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTT  288 (369)
T ss_dssp             --------------------------------------------EEEE-CSSCEEEEEECSSSSEEEEEECCC-------
T ss_pred             --------------------------------------------eeec-CCCCceeEEecCCCceEEEeecCCCceEEEE
Confidence                                                        1111 445566666666666666666665       


Q ss_pred             -------cEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         564 -------TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       564 -------~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                             .+++||..+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|++.+
T Consensus       289 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          289 SANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             ------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             ecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence                   799999999999999999999999999999999999999999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-37  Score=342.75  Aligned_cols=285  Identities=26%  Similarity=0.406  Sum_probs=246.5

Q ss_pred             hheecccCCcceEEEEECCCC-CEEEEEECCCcEEEEECCCC-----cEEEEEeccCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640         179 KFKMLKSHLLPLTNITFDKFG-TRCLTGSYDRTCKLWDIKSG-----HEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRT  251 (616)
Q Consensus       179 ~~~~l~~h~~~i~~v~~s~~g-~~lasgs~dg~i~iwd~~~~-----~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~  251 (616)
                      ....+++|.+.|++++|+|++ ++|++|+.||+|++||+.+.     .....+.+|...|.+++|+|+++++ +++.|++
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE  453 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence            345689999999999999875 79999999999999999763     4567889999999999999999955 9999999


Q ss_pred             EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe---eec---eeeEEEcCCC--C
Q psy3640         252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGH---SAEVTFSPDQ--S  323 (616)
Q Consensus       252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~---~~~v~~~~~~--~  323 (616)
                      |++||+.+++....+.+|...|.+++|+ +++++|++++.|++|++||..........   .+|   ...++|+|++  .
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            9999999999999999999999999999 88999999999999999998655433322   233   3456899986  6


Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640         324 TFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI  403 (616)
Q Consensus       324 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  403 (616)
                      .+++++.|+.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.||.|++||++                ....+
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~----------------~~~~~  596 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA----------------EGKKL  596 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT----------------TTEEE
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----------------CCceE
Confidence            89999999999999999999999999999999999999999999999999999999997                44444


Q ss_pred             EEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC-------------------CCEEEEEEcCCC
Q psy3640         404 HILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE-------------------DEVLDIAFDYSG  464 (616)
Q Consensus       404 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~l~~~~~~  464 (616)
                      ..+. +...+.+++|+|++.++++++ ++.|++||++++..+..+..+.                   ..+++++|+|+|
T Consensus       597 ~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg  674 (694)
T 3dm0_A          597 YSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG  674 (694)
T ss_dssp             ECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred             EEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence            4443 456799999999998888776 4569999999998887765321                   137899999999


Q ss_pred             CEEEEEeCCCcEEEEecC
Q psy3640         465 SKLATASSDQTANLWTVG  482 (616)
Q Consensus       465 ~~l~~~~~dg~i~iwd~~  482 (616)
                      ++|++++.||.|++|++.
T Consensus       675 ~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          675 STLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SEEEEEETTSEEEEEEC-
T ss_pred             CEEEEEcCCCeEEEEecc
Confidence            999999999999999985

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-39  Score=336.49  Aligned_cols=349  Identities=9%  Similarity=0.108  Sum_probs=274.5

Q ss_pred             hhhhhheec-ccCCcceEEEEECC-CCCEEEEEECCCcEEEEECCC---Cc---EEEEEeccCCcEEEEEEcCCCC-EEE
Q psy3640         175 QRYEKFKML-KSHLLPLTNITFDK-FGTRCLTGSYDRTCKLWDIKS---GH---EICTYRGHQNVVYAVAFSEPYG-CLT  245 (616)
Q Consensus       175 ~~~~~~~~l-~~h~~~i~~v~~s~-~g~~lasgs~dg~i~iwd~~~---~~---~~~~~~~h~~~I~~l~fs~~~~-lls  245 (616)
                      ...+.+..+ .+|..+|++++|+| ++++||+|+.||+|+|||+.+   +.   ....+ +|...|.+++|+|++. +++
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s  128 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV  128 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence            344566777 89999999999999 999999999999999999876   43   22233 5999999999999988 559


Q ss_pred             EECCCcEEEEeCC---CCceEEEeeC------------CCCcEEEEEEe-CCCCCEEEEEECCCeEEEEeCCCcceeEEe
Q psy3640         246 GSYDRTCKLWDIK---SGHEICTYRG------------HQNVVYAVAFS-EPYGDKILTGSFDKTLKLWASAKEECIQTY  309 (616)
Q Consensus       246 ~s~d~~I~iwd~~---~~~~~~~~~~------------h~~~V~~l~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~  309 (616)
                      ++.|++|++||+.   +++....+.+            +...+.++.+. .+++.++++++.|+.|++||+++++.+..+
T Consensus       129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence            9999999999995   6655544432            44556666632 167899999999999999999999999998


Q ss_pred             ee--ce---eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cCCcCEEEEEEcC----CCCEEEEEECCCcEEEE
Q psy3640         310 RG--HS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK-AHTGPVISLQFSS----DRNMLITGSFDSSIVVW  379 (616)
Q Consensus       310 ~~--~~---~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~----~~~~l~~g~~dg~i~iw  379 (616)
                      .+  |.   ..++|+|++.++++|+.||.|++||+++++.+..+. .|..+|.+++|+|    ++.+|++|+.||.|++|
T Consensus       209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            76  44   345899999999999999999999999999998886 7888999996664    67799999999999999


Q ss_pred             ecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--CCCCEEE
Q psy3640         380 DIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--HEDEVLD  457 (616)
Q Consensus       380 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~  457 (616)
                      |++                .......+.+|...+..+.|+|++..+    .+.              .+.+  |...|.+
T Consensus       289 d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~--------------~~~~~~~~~~v~~  334 (437)
T 3gre_A          289 NFV----------------KGHCQYAFINSDEQPSMEHFLPIEKGL----EEL--------------NFCGIRSLNALST  334 (437)
T ss_dssp             ETT----------------TTEEEEEEESSSSCCCGGGGSCBCSSG----GGC--------------CCCCCCSGGGGCC
T ss_pred             EcC----------------CCcEEEEEEcCCCCCccceeccccccc----ccc--------------eecccccCCceEE
Confidence            998                777888889999888888888876554    111              1333  8889999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEe
Q psy3640         458 IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF  537 (616)
Q Consensus       458 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  537 (616)
                      ++|+ ++++|++++.|+.|++||+.+. .....+.++......+....+++...+++..        |+... .......
T Consensus       335 l~~~-~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~  403 (437)
T 3gre_A          335 ISVS-NDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRK--------MKRTS-THSVDDS  403 (437)
T ss_dssp             EEEE-TTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEE--------CC-----------
T ss_pred             EEEC-CceEEEecCCCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEe--------ccccc-ccccCcc
Confidence            9999 7789999999999999999876 3445566666556667777777777666655        22222 1233455


Q ss_pred             eccccCEEEEEEecC--CCEEEEEECCCcEEEec
Q psy3640         538 YGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWS  569 (616)
Q Consensus       538 ~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd  569 (616)
                      ..|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       404 ~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          404 LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ---CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            679999999999998  77999999999999995

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=5e-38  Score=321.48  Aligned_cols=310  Identities=17%  Similarity=0.234  Sum_probs=251.2

Q ss_pred             EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc------eeEEeeeceee---EEEcCC----C---CEEE
Q psy3640         263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE------CIQTYRGHSAE---VTFSPD----Q---STFC  326 (616)
Q Consensus       263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~~~~---v~~~~~----~---~~l~  326 (616)
                      ...+.+|.+.|++++|+ +  ++|++++.||.|++|++.+++      ....+.+|...   ++|+|+    +   .+|+
T Consensus         9 ~~~~~~h~~~i~~~~~~-~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSAC-N--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEESSCSSSCEEEEEEC-S--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhcCeEEEEec-C--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            35678999999999998 4  899999999999999999988      77777777644   579999    9   9999


Q ss_pred             EEeCCCcEEEEECCCCce-----eEEeecC-----CcCEEEEEEc----CCCCE-EEEEECCCcEEEEecccccCCcccc
Q psy3640         327 SCSMDHTARIFNTNSGQE-----MHTLKAH-----TGPVISLQFS----SDRNM-LITGSFDSSIVVWDIQYQFGTRNAY  391 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~-----~~~~~~~-----~~~v~~l~~~----~~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~  391 (616)
                      +++.||.|++||+.+++.     ...+..|     ...|.+++|+    |+++. |++++.||.|++||++.......  
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--  163 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN--  163 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH--
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc--
Confidence            999999999999998887     8888888     5999999999    99999 99999999999999974100000  


Q ss_pred             cccccccCCcceEEE-------ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec---C---CCCEEEE
Q psy3640         392 AESTYRASHKPIHIL-------TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN---H---EDEVLDI  458 (616)
Q Consensus       392 ~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~v~~l  458 (616)
                         .......+...+       ..|...+.+++|+|++ .+++++.||.|++||+++++.+..+..   |   ...|.++
T Consensus       164 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          164 ---SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             ---HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ---cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence               000011122244       4588899999999999 999999999999999999999999998   8   8999999


Q ss_pred             EEcCCCCEEEEEeCC---CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640         459 AFDYSGSKLATASSD---QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ  535 (616)
Q Consensus       459 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  535 (616)
                      +|+|++.+|++++.|   |.|++||+.+.... ..+......                                 .....
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~---------------------------------~~~~~  285 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHS---------------------------------SQASL  285 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC-----------------------------------------
T ss_pred             EECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCccc---------------------------------ccccc
Confidence            999999999999999   99999998764211 111110000                                 00001


Q ss_pred             EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec------cC---------------cccEEEEEEeeC
Q psy3640         536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK------AH---------------EDDVFSCGFNYN  594 (616)
Q Consensus       536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~------~h---------------~~~V~~l~~s~~  594 (616)
                      ....|...|.+++|+|++++|++++.||.|++||+.+++++..+.      +|               ..+|.+++|+|+
T Consensus       286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~  365 (397)
T 1sq9_A          286 GEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK  365 (397)
T ss_dssp             CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT
T ss_pred             cccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc
Confidence            112388999999999999999999999999999999999999999      88               999999999999


Q ss_pred             C----------CEEEEeeCCCcEEEcccCCC
Q psy3640         595 G----------DTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       595 ~----------~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      +          ++|++++.||.|++|++.+.
T Consensus       366 g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          366 GWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             TTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             cccccccccccceEEEecCCCcEEEEEcCCC
Confidence            8          79999999999999999765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-37  Score=306.52  Aligned_cols=279  Identities=17%  Similarity=0.303  Sum_probs=250.0

Q ss_pred             ecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcE---EEEEe--ccCCcEEEEEEcCCCCE-EEEECCCcEEEE
Q psy3640         182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHE---ICTYR--GHQNVVYAVAFSEPYGC-LTGSYDRTCKLW  255 (616)
Q Consensus       182 ~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~---~~~~~--~h~~~I~~l~fs~~~~l-ls~s~d~~I~iw  255 (616)
                      ...+|..+|++++|+|++++|++++ ||.|++||+.+++.   ...+.  +|...|.+++|+|++.+ ++++.|+.|++|
T Consensus        46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~  124 (337)
T 1gxr_A           46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW  124 (337)
T ss_dssp             EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred             eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence            3447999999999999999999999 99999999987753   33343  79999999999999984 588999999999


Q ss_pred             eCCCCc--eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEeC
Q psy3640         256 DIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSM  330 (616)
Q Consensus       256 d~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~~  330 (616)
                      |+.+++  ....+..|...|.+++|+ ++++++++++.||.|++||+.+++....+..|..   .++|+|+++.+++++.
T Consensus       125 d~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  203 (337)
T 1gxr_A          125 DLAAPTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             ECCCC--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ECCCCCcceeeecccCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence            999987  667788999999999999 7899999999999999999999999888877654   4589999999999999


Q ss_pred             CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640         331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS  410 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (616)
                      ||.|++||+++++.+..+. +...+.+++|+|+++++++++.++.|++||++                .. ....+..|.
T Consensus       204 dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~----------------~~-~~~~~~~~~  265 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN----------------KP-DKYQLHLHE  265 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------SS-CEEEECCCS
T ss_pred             CCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECC----------------CC-CeEEEcCCc
Confidence            9999999999998887775 78899999999999999999999999999996                22 345677899


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV  481 (616)
Q Consensus       411 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  481 (616)
                      ..+.+++|+|+++++++++.||.|++||+.+++.+... .|...+.+++|+|++++|++++.||.+++|++
T Consensus       266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            99999999999999999999999999999999877554 47889999999999999999999999999996

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-37  Score=304.12  Aligned_cols=283  Identities=19%  Similarity=0.271  Sum_probs=255.0

Q ss_pred             hhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEE
Q psy3640         176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKL  254 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~i  254 (616)
                      .++..+.+.+|..+|++++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.++ +++.|+.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            45677889999999999999 999999999999999999999999999999999999999999999955 9999999999


Q ss_pred             EeCCCC---ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcC-CCCEEEE
Q psy3640         255 WDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSP-DQSTFCS  327 (616)
Q Consensus       255 wd~~~~---~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~-~~~~l~~  327 (616)
                      |++...   +.+..+.+|...|.+++|.   ++.+++++.|+.|++||  .++....+..+...   +++.| ++..+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            998665   5677889999999999995   68999999999999999  66677777666554   46776 9999999


Q ss_pred             EeCCCcEEEEECCCCceeEEeec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640         328 CSMDHTARIFNTNSGQEMHTLKA-HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL  406 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (616)
                      ++.||.|++||  .++....+.. |...+.+++|+|++. +++++.||.|++||++                ....+..+
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~----------------~~~~~~~~  221 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMH----------------TGDVLRTY  221 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETT----------------TCCEEEEE
T ss_pred             EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECC----------------chhhhhhh
Confidence            99999999999  4566777776 899999999999988 9999999999999998                67788889


Q ss_pred             ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640         407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV  485 (616)
Q Consensus       407 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  485 (616)
                      ..|...+.+++|+|++ .+++++.||.|++||+++++....+..|...|.+++|+|+++ +++++.||.|++|++.+..
T Consensus       222 ~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~  298 (313)
T 3odt_A          222 EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSR  298 (313)
T ss_dssp             ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGG
T ss_pred             hcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCc
Confidence            9999999999999999 588999999999999999999999999999999999999998 6679999999999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.1e-38  Score=320.15  Aligned_cols=299  Identities=18%  Similarity=0.303  Sum_probs=252.0

Q ss_pred             EeeCCCCcEEEEEEeCC---CCCEEEEEECCCeEEEEeCCCcceeEEeeec--------eeeEEEcCC----CCEEEEEe
Q psy3640         265 TYRGHQNVVYAVAFSEP---YGDKILTGSFDKTLKLWASAKEECIQTYRGH--------SAEVTFSPD----QSTFCSCS  329 (616)
Q Consensus       265 ~~~~h~~~V~~l~~~~~---~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~----~~~l~~~~  329 (616)
                      ...+|.++|++++|+|.   ....+++++.++.|++||+.+++.+..+..+        ...++|+|+    +.++++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            34589999999999942   4566777777789999999999887777644        345689998    67999999


Q ss_pred             CCCcEEEEECCCCceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE--
Q psy3640         330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL--  406 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--  406 (616)
                      .||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||++                .......+  
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~----------------~~~~~~~~~~  156 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----------------TDTLVAIFGG  156 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT----------------TTEEEEEECS
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee----------------cCeEEEEecc
Confidence            999999999999999999999999999999999 89999999999999999997                56666666  


Q ss_pred             -ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee----------------------------cCCCCEEE
Q psy3640         407 -TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK----------------------------NHEDEVLD  457 (616)
Q Consensus       407 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------------~~~~~v~~  457 (616)
                       ..|...|.+++|+|++.++++++.||.|++||+++++....+.                            .|...|.+
T Consensus       157 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  236 (366)
T 3k26_A          157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC  236 (366)
T ss_dssp             TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred             cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence             6899999999999999999999999999999999876544333                            38889999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEe
Q psy3640         458 IAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF  537 (616)
Q Consensus       458 l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  537 (616)
                      ++|+  ++++++++.|+.|++||+............+...                                 ...+..+
T Consensus       237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~  281 (366)
T 3k26_A          237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN---------------------------------VTILGRF  281 (366)
T ss_dssp             EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC---------------------------------EEEEEEE
T ss_pred             EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc---------------------------------hheeccc
Confidence            9998  6799999999999999987654332222211111                                 2456677


Q ss_pred             eccccCEEEEEEecC--CCEEEEEECCCcEEEecCCcCeee----eEeccC--cccEEEEEEeeCCCEEEEeeCCCcEEE
Q psy3640         538 YGHSNEVSKVSFHPT--GKLVLSGSQDTTCRLWSTESGECI----QVLKAH--EDDVFSCGFNYNGDTIITASKDNTCCI  609 (616)
Q Consensus       538 ~~h~~~v~~l~~spd--g~~l~s~s~dg~i~iwd~~~~~~~----~~~~~h--~~~V~~l~~s~~~~~l~t~s~Dg~i~v  609 (616)
                      ..|...|++++|+|+  +++|++|+.||.|++||+.+++..    ..+.+|  ..+|++++|+|++++|++++.||.|++
T Consensus       282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i  361 (366)
T 3k26_A          282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWR  361 (366)
T ss_dssp             ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEE
Confidence            889999999999999  999999999999999999998644    477777  789999999999999999999999999


Q ss_pred             cccCC
Q psy3640         610 WRSMN  614 (616)
Q Consensus       610 W~~~~  614 (616)
                      ||+.+
T Consensus       362 wd~~~  366 (366)
T 3k26_A          362 WDRLR  366 (366)
T ss_dssp             EEC--
T ss_pred             EEecC
Confidence            99863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.6e-37  Score=303.29  Aligned_cols=287  Identities=26%  Similarity=0.348  Sum_probs=248.8

Q ss_pred             CcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEE
Q psy3640         219 GHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL  297 (616)
Q Consensus       219 ~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~i  297 (616)
                      .+....+.+|.+.|.+++| +++. +++++.||.|++||+.+++....+..|...|.+++|+ ++++++++++.|+.+++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYD-SEKELLLFGGKDTMING   85 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEE-TTTTEEEEEETTSCEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEEC-CCCCEEEEecCCCeEEE
Confidence            3677889999999999999 7766 6699999999999999999999999999999999999 78999999999999998


Q ss_pred             EeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy3640         298 WASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV  377 (616)
Q Consensus       298 wd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~  377 (616)
                      |++....                                    .++....+..|...|.+++|  +++.+++++.||.|+
T Consensus        86 ~~~~~~~------------------------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~  127 (313)
T 3odt_A           86 VPLFATS------------------------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAK  127 (313)
T ss_dssp             EETTCCT------------------------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             EEeeecC------------------------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEE
Confidence            8875322                                    23345556779999999999  577999999999999


Q ss_pred             EEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCE
Q psy3640         378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTLKN-HEDEV  455 (616)
Q Consensus       378 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v  455 (616)
                      +||                  .......+..|...+.++.+.+ ++..+++++.||.|++||  ..+....+.. +...+
T Consensus       128 ~~d------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i  187 (313)
T 3odt_A          128 VWK------------------EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV  187 (313)
T ss_dssp             EEE------------------TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE
T ss_pred             EEc------------------CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccE
Confidence            999                  2355677788999999999988 899999999999999999  4556666766 88889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640         456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ  535 (616)
Q Consensus       456 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  535 (616)
                      .+++|+|++. +++++.||.+++||+...                                               +.+.
T Consensus       188 ~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-----------------------------------------------~~~~  219 (313)
T 3odt_A          188 RHLAVVDDGH-FISCSNDGLIKLVDMHTG-----------------------------------------------DVLR  219 (313)
T ss_dssp             EEEEEEETTE-EEEEETTSEEEEEETTTC-----------------------------------------------CEEE
T ss_pred             EEEEEcCCCe-EEEccCCCeEEEEECCch-----------------------------------------------hhhh
Confidence            9999999887 888888888888888653                                               3344


Q ss_pred             EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      .+.+|...|++++|+|++ .|++++.||.|++||+.+++++..+..|..+|.+++|+|+++ +++++.||.|++|++.+.
T Consensus       220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            566799999999999999 699999999999999999999999999999999999999998 667999999999999764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-37  Score=314.93  Aligned_cols=302  Identities=16%  Similarity=0.172  Sum_probs=241.8

Q ss_pred             hhhhhheecccCCcceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEEEEEe--ccCCcEEEEEEcC-CCC-EEEEECC
Q psy3640         175 QRYEKFKMLKSHLLPLTNITFDKFG-TRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSE-PYG-CLTGSYD  249 (616)
Q Consensus       175 ~~~~~~~~l~~h~~~i~~v~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~--~h~~~I~~l~fs~-~~~-lls~s~d  249 (616)
                      ..+...+.+.+|...|++++|+|++ ++||+|+.||.|+|||+.+++....+.  +|...|.+++|+| ++. +++++.|
T Consensus        61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            3456677899999999999999999 999999999999999999998887776  6999999999999 555 5599999


Q ss_pred             CcEEEEeCCCCceEEEeeCC---CCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCC
Q psy3640         250 RTCKLWDIKSGHEICTYRGH---QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQS  323 (616)
Q Consensus       250 ~~I~iwd~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~  323 (616)
                      +.|++||+.+ ..+..+..|   ...|.+++|+ ++++.+++++.|+.|++||+ +++.+..+.+|..   .++|+|+++
T Consensus       141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCT
T ss_pred             CEEEEEECCC-CceEEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCC
Confidence            9999999996 555555444   4889999999 88999999999999999999 5777888877654   458999999


Q ss_pred             -EEEEEeCCCcEEEEECCC----CceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccc-c
Q psy3640         324 -TFCSCSMDHTARIFNTNS----GQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST-Y  396 (616)
Q Consensus       324 -~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-~  396 (616)
                       ++++++.|+.|++||+++    +..+..+ .|...|.+++|+| ++++|++++.|+.|++||++............. .
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  296 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ  296 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence             999999999999999987    5566666 6999999999999 999999999999999999984322111100000 0


Q ss_pred             ccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--CCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640         397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--HEDEVLDIAFDYSGSKLATASSDQ  474 (616)
Q Consensus       397 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~dg  474 (616)
                      ......+.........+..++++|++++  +++.|+.|++||+.+++.+..+..  +...+..++|+|++++|++++ |+
T Consensus       297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred             cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence            0000001111111234445666777766  777899999999999999999987  457788889999999999997 99


Q ss_pred             cEEEEecCC
Q psy3640         475 TANLWTVGG  483 (616)
Q Consensus       475 ~i~iwd~~~  483 (616)
                      .|++|++.+
T Consensus       374 ~i~iw~~~~  382 (383)
T 3ei3_B          374 NILIWNRED  382 (383)
T ss_dssp             EEEEEECC-
T ss_pred             cEEEEecCC
Confidence            999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.5e-37  Score=311.24  Aligned_cols=292  Identities=15%  Similarity=0.253  Sum_probs=245.7

Q ss_pred             eecccCCcceEEEEECCCCCEEE-EEEC---CCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCC---CC-EEEEECCCc
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCL-TGSY---DRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEP---YG-CLTGSYDRT  251 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~la-sgs~---dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~---~~-lls~s~d~~  251 (616)
                      +.+++|..+|++++|+|++..++ +|+.   ||.|+|||+.+++..... .+|..+|.+++|+|+   +. +++++.|+.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            45678999999999999996554 5655   899999999998876544 489999999999998   35 669999999


Q ss_pred             EEEEeCCCCc-eEEEeeCCCCcEEEEEEeC-----CCCCEEEEEECCCeEEEEeCCCcc-eeEEeeece-------eeEE
Q psy3640         252 CKLWDIKSGH-EICTYRGHQNVVYAVAFSE-----PYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHS-------AEVT  317 (616)
Q Consensus       252 I~iwd~~~~~-~~~~~~~h~~~V~~l~~~~-----~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~-------~~v~  317 (616)
                      |++||+.+++ .+..+.+|...|.+++|.+     ++++.|++++.||.|++||+.+++ .+..+..+.       ..++
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            9999999998 8899999999999997752     788999999999999999999987 677765432       2344


Q ss_pred             ----EcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEecccccCCccc
Q psy3640         318 ----FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS---DRNMLITGSFDSSIVVWDIQYQFGTRNA  390 (616)
Q Consensus       318 ----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~  390 (616)
                          |+|++.++++++.||.|++||+++++.... ..|...|.+++|+|   +++++++++.||.|++||++.....   
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---  247 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT---  247 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT---
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc---
Confidence                779999999999999999999999887544 56899999999999   9999999999999999999732110   


Q ss_pred             ccccccccCCcceEEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCC-------------------eEEEEeec
Q psy3640         391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTM-------------------CCFYTLKN  450 (616)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~  450 (616)
                              .........+|...|.+++|+|++. ++++++.||.|++||++++                   +.+..+..
T Consensus       248 --------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          248 --------KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             --------TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             --------cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence                    1111223458999999999999998 8999999999999998753                   46778889


Q ss_pred             CCCCEEEEEEcCCCCEEE-EEeCCCcEEEEecCCc
Q psy3640         451 HEDEVLDIAFDYSGSKLA-TASSDQTANLWTVGGA  484 (616)
Q Consensus       451 ~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd~~~~  484 (616)
                      |...|.+++|+|++++|+ +++.||.|++|++.+.
T Consensus       320 ~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          320 STQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             CSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             CCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            999999999999999998 8999999999999764

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-39  Score=338.48  Aligned_cols=344  Identities=9%  Similarity=0.067  Sum_probs=245.8

Q ss_pred             EEEEEeccCCcEEEEEEcCCC---------CEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEE
Q psy3640         221 EICTYRGHQNVVYAVAFSEPY---------GCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS  290 (616)
Q Consensus       221 ~~~~~~~h~~~I~~l~fs~~~---------~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s  290 (616)
                      ....+. +.+.|.+|+|+|++         .++ +++.++..                       -..+ |++..+++++
T Consensus       126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~-~~~~~laS~s  180 (524)
T 2j04_B          126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLN-EHLEMFDKEK  180 (524)
T ss_dssp             CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred             ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccc-hhhhhhccCC
Confidence            333444 67899999999986         555 55544320                       0124 7889999999


Q ss_pred             CCCeEEEEeCCCccee----EEeeec---eeeEEEcCC------CCEEEEEeCCCcEEEEECCCCce-----------eE
Q psy3640         291 FDKTLKLWASAKEECI----QTYRGH---SAEVTFSPD------QSTFCSCSMDHTARIFNTNSGQE-----------MH  346 (616)
Q Consensus       291 ~dg~i~iwd~~~~~~~----~~~~~~---~~~v~~~~~------~~~l~~~~~dg~i~i~d~~~~~~-----------~~  346 (616)
                      .|++|++|++.+++..    ..+.++   ...++|+|+      +.+|++++.||+|++||+.++..           ..
T Consensus       181 ~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~  260 (524)
T 2j04_B          181 HSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSL  260 (524)
T ss_dssp             -CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSE
T ss_pred             CCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceE
Confidence            9999999999887643    234433   456789996      57999999999999999987642           24


Q ss_pred             EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEE--EEccCC-C
Q psy3640         347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNC--LFNFSN-S  423 (616)
Q Consensus       347 ~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~  423 (616)
                      .+.+|...|.+++|+++ ..|++|+.||+|++||++.               ...+...+.+|...|.++  +|++++ .
T Consensus       261 ~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~---------------~~~~~~~~~~H~~~V~sv~~~~s~~g~~  324 (524)
T 2j04_B          261 TLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTD---------------PEVPSFYDQVHDSYILSVSTAYSDFEDT  324 (524)
T ss_dssp             EECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTB---------------CSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred             EEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCC---------------CCCceEEeecccccEEEEEEEcCCCCCe
Confidence            67789999999999986 4899999999999999973               223456678999999999  567887 8


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeecCCC--CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeE
Q psy3640         424 MIASSSLDGTAKLWDVRTMCCFYTLKNHED--EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKV  501 (616)
Q Consensus       424 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i  501 (616)
                      +|++++.|++|++||++++++...+.+|..  .|.+++|+|+++.+++++.|++|++||++.... ...+.+|..   .|
T Consensus       325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~---~V  400 (524)
T 2j04_B          325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA-VHPLVSRET---TI  400 (524)
T ss_dssp             EEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC-CEEEEECSS---CE
T ss_pred             EEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc-ceeeecCCC---ce
Confidence            999999999999999999877766666543  588999999999999999999999999987543 334555554   58


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee-----ccccCEEEEEEecCCCEEEEEECCCcEEEecCC-cCee
Q psy3640         502 LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY-----GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE-SGEC  575 (616)
Q Consensus       502 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~-~~~~  575 (616)
                      .+++|+|++++|++|+.||.|++||+...  .+....     .+...+.+++|+|+++.+..  .| .+.+|+.. ++.+
T Consensus       401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~-~~~~~~~~~~g~~  475 (524)
T 2j04_B          401 TAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS-SYEVYPLTVNDVS  475 (524)
T ss_dssp             EEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE--CC-CCCCCC-------
T ss_pred             EEEEeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc--cC-CceecccccCCcc
Confidence            88999999999999999999999998653  111111     01225779999999985532  22 34455543 5778


Q ss_pred             eeEeccCcccEEEEEEeeCCC---EEEEeeCCCcEEEcccCC
Q psy3640         576 IQVLKAHEDDVFSCGFNYNGD---TIITASKDNTCCIWRSMN  614 (616)
Q Consensus       576 ~~~~~~h~~~V~~l~~s~~~~---~l~t~s~Dg~i~vW~~~~  614 (616)
                      +..+.+|..+|.+++|+|+++   .||+|+.||+|+||++.-
T Consensus       476 ~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          476 KAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             ------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             eeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            889999999999999999964   999999999999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.8e-37  Score=337.38  Aligned_cols=286  Identities=25%  Similarity=0.363  Sum_probs=241.3

Q ss_pred             EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-----ceeEEeeeceee---EEEcCCCCEEEEEeCCCcE
Q psy3640         263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-----ECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i  334 (616)
                      ...+.+|.+.|++++|++.++++|++|+.|++|++|++.+.     .....+.+|...   ++|+|+++++++|+.||.|
T Consensus       375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            35688999999999999666789999999999999998764     345567777654   5899999999999999999


Q ss_pred             EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE---EecCcc
Q psy3640         335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI---LTGHSQ  411 (616)
Q Consensus       335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  411 (616)
                      ++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||...                ......   ..+|..
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~----------------~~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG----------------ECKYTISEGGEGHRD  518 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----------------CEEEEECSSTTSCSS
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC----------------CcceeeccCCCCCCC
Confidence            9999999999999999999999999999999999999999999999751                111111   136888


Q ss_pred             ceeEEEEccCC--CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640         412 EISNCLFNFSN--SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ  489 (616)
Q Consensus       412 ~i~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  489 (616)
                      .|.+++|+|++  ..+++++.|+.|++||+++++....+.+|.+.|.+++|+|++++|++++.||.|++||+.+...   
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~---  595 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK---  595 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE---
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce---
Confidence            89999999986  6899999999999999999999999999999999999999999999999999999999976421   


Q ss_pred             EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640         490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS  569 (616)
Q Consensus       490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd  569 (616)
                                                                  +..+ .+...|.+++|+|++.+|++++ |+.|++||
T Consensus       596 --------------------------------------------~~~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd  629 (694)
T 3dm0_A          596 --------------------------------------------LYSL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWD  629 (694)
T ss_dssp             --------------------------------------------EECC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEE
T ss_pred             --------------------------------------------EEEe-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEE
Confidence                                                        1111 1345688888998887777765 45589999


Q ss_pred             CCcCeeeeEeccCc-------------------ccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         570 TESGECIQVLKAHE-------------------DDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       570 ~~~~~~~~~~~~h~-------------------~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      +++++.+..+..+.                   -.+++++|+|+|++|++|+.||+|++|++.
T Consensus       630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             TTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            88888877665322                   237899999999999999999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.5e-38  Score=322.74  Aligned_cols=361  Identities=17%  Similarity=0.219  Sum_probs=249.1

Q ss_pred             CcEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEE-EEECCCcEEEEeCCCCceEEEee-------------CCCCcE
Q psy3640         209 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-PYGCL-TGSYDRTCKLWDIKSGHEICTYR-------------GHQNVV  273 (616)
Q Consensus       209 g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~-~~~ll-s~s~d~~I~iwd~~~~~~~~~~~-------------~h~~~V  273 (616)
                      +.+++|+++.++....+.+|.+.|++++|+| ++.++ +++.||.|++||+.+++....+.             +|...|
T Consensus        23 ~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  102 (408)
T 4a11_B           23 STRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSV  102 (408)
T ss_dssp             HHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCE
T ss_pred             CcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcE
Confidence            4577888888888888999999999999999 88855 89999999999999887554443             599999


Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--eeeEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy3640         274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--SAEVTFSP---DQSTFCSCSMDHTARIFNTNSGQEMHTL  348 (616)
Q Consensus       274 ~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~  348 (616)
                      .+++|+|.++.++++++.||.|++||+.+++....+...  ...++++|   ++.++++++.+|.|++||+++++.+..+
T Consensus       103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred             EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence            999999558889999999999999999999888776533  34567777   4559999999999999999999999999


Q ss_pred             ecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640         349 KAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS  427 (616)
Q Consensus       349 ~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  427 (616)
                      ..|...|.+++|+|+++ ++++++.||.|++||++..........................|...|.+++|+|+++++++
T Consensus       183 ~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  262 (408)
T 4a11_B          183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT  262 (408)
T ss_dssp             CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred             cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence            99999999999999998 59999999999999997543221111111111122222333678899999999999999999


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEc
Q psy3640         428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD  507 (616)
Q Consensus       428 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  507 (616)
                      ++.||.|++||+++++.......+....     ....                                    +......
T Consensus       263 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~~~------------------------------------~~~~~~~  301 (408)
T 4a11_B          263 VGTDNRMRLWNSSNGENTLVNYGKVCNN-----SKKG------------------------------------LKFTVSC  301 (408)
T ss_dssp             EETTSCEEEEETTTCCBCCCCCCCCCCC-----CSSC------------------------------------CCCEECC
T ss_pred             ecCCCeEEEEECCCCccceecccccccc-----cccc------------------------------------ceeEEec
Confidence            9999999999999886544332211000     0000                                    0000111


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEE
Q psy3640         508 YSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF  587 (616)
Q Consensus       508 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~  587 (616)
                      ..+..+++++.++.|++||+.++ ..+..+.+|...|++++|+|++++|++++.||.|++||+.+++.+.....+...  
T Consensus       302 ~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--  378 (408)
T 4a11_B          302 GCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK--  378 (408)
T ss_dssp             SSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------
T ss_pred             CCCceEEEEecCCEEEEEECcCC-cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec--
Confidence            22334555566677777777663 566778899999999999999999999999999999999999888766544322  


Q ss_pred             EEEEee-CCCEEEEeeCCCcEEEcccCC
Q psy3640         588 SCGFNY-NGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       588 ~l~~s~-~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                       ..+.+ ....+.+++.|+.+++|+...
T Consensus       379 -~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          379 -SQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ----------------------------
T ss_pred             -cccccccceeecccCccCceeecCCcc
Confidence             22333 334566778899999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-37  Score=314.81  Aligned_cols=287  Identities=17%  Similarity=0.217  Sum_probs=250.8

Q ss_pred             ecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC
Q psy3640         182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK  258 (616)
Q Consensus       182 ~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~  258 (616)
                      .+..|..+|++++|+|+|++||+|+.||.|++||+.+++  .+..+.+|...|.+++|+|++.++ +++.|+.|++||+.
T Consensus         3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            345699999999999999999999999999999999987  888999999999999999999855 88999999999999


Q ss_pred             CCceEEE--eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce---eEEe-ee---ceeeEEEcCCCCEEEEEe
Q psy3640         259 SGHEICT--YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC---IQTY-RG---HSAEVTFSPDQSTFCSCS  329 (616)
Q Consensus       259 ~~~~~~~--~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~-~~---~~~~v~~~~~~~~l~~~~  329 (616)
                      +++....  +..|...|.+++|+ ++++++++++.|+.|++||+..+..   ...+ ..   ....++|+|++.++++++
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  161 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS  161 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCeeeeeEEeecCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence            8875444  46799999999999 8899999999999999999988763   2333 22   345568999999999999


Q ss_pred             CCCcEEEEEC------------------CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccc
Q psy3640         330 MDHTARIFNT------------------NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY  391 (616)
Q Consensus       330 ~dg~i~i~d~------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  391 (616)
                      .||.|++||+                  ..++.+..+..|...|.+++|+|++++|++++.|+.|++||++         
T Consensus       162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~---------  232 (372)
T 1k8k_C          162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD---------  232 (372)
T ss_dssp             TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG---------
T ss_pred             CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC---------
Confidence            9999999995                  4678888998999999999999999999999999999999998         


Q ss_pred             cccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCC--CeE--E----------------------
Q psy3640         392 AESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT--MCC--F----------------------  445 (616)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~--~----------------------  445 (616)
                             ....+..+..|...+.+++|+|++.++++| .|+.|++|++++  +..  .                      
T Consensus       233 -------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (372)
T 1k8k_C          233 -------KKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN  304 (372)
T ss_dssp             -------GTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred             -------CCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence                   667888889999999999999999988887 899999999987  421  0                      


Q ss_pred             --------------EEe-ecCCCCEEEEEEc-CCC---CEEEEEeCCCcEEEEecCCcee
Q psy3640         446 --------------YTL-KNHEDEVLDIAFD-YSG---SKLATASSDQTANLWTVGGAVE  486 (616)
Q Consensus       446 --------------~~~-~~~~~~v~~l~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~  486 (616)
                                    ..+ .+|...|++++|. ++|   .+|++++.||.|++|++.+...
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                          222 4789999999966 666   9999999999999999976543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-39  Score=329.83  Aligned_cols=313  Identities=11%  Similarity=0.089  Sum_probs=256.9

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEE
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEIC  264 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~  264 (616)
                      .-...|.+++|||||+++|+++.|++|+  |.+.++.   +.+|...|.+++|+|+|      .++.+.+|+   ++...
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~---l~gh~~~v~~V~FsPdg------~~~~~~~~~---~~~~~   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD---INCNSKNLFHVKEFPLE------FENKLDFEL---AQQNG   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC---CSSBGGGTEEEEEECCC------CCCTTTTSC---CCSSC
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccce---ecCCCccEEEEEECCCC------CcceEEEEe---CCCce
Confidence            4557899999999999999999999999  7655544   47999999999999998      455555555   33222


Q ss_pred             Eee-CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec-------eeeEEEcCCCCEEEEEeCCCcEEE
Q psy3640         265 TYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-------SAEVTFSPDQSTFCSCSMDHTARI  336 (616)
Q Consensus       265 ~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~l~~~~~dg~i~i  336 (616)
                      .+. .|...|.+++|+ |+|..||+++.||.|++||...  ++..+..+       ...++|+|+|++|++|+.||+|++
T Consensus        79 ~~~~~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           79 LLNSQPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF  155 (588)
T ss_dssp             SSTTSCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred             EeecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence            333 468899999999 8999999999999999999654  55555522       345799999999999999999999


Q ss_pred             EECCCCce-------eEEe----ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCc---c
Q psy3640         337 FNTNSGQE-------MHTL----KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK---P  402 (616)
Q Consensus       337 ~d~~~~~~-------~~~~----~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---~  402 (616)
                      ||+.++..       +.++    .+|...|.+++|+|+|  +++++.|++|++||+.                ...   .
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~----------------~~~~~~~  217 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVS----------------ASSHQPV  217 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCC----------------SSSSCCC
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECC----------------CCccccc
Confidence            99998753       5666    5677899999999999  8889999999999996                222   2


Q ss_pred             eEEE-ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEE--cCCCCEEEEEeCCCcEEEE
Q psy3640         403 IHIL-TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF--DYSGSKLATASSDQTANLW  479 (616)
Q Consensus       403 ~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--~~~~~~l~~~~~dg~i~iw  479 (616)
                      ...+ .+|...|.+++|+  ++.+++++ ++.|++||+.+++......+|...+.+++|  +|++..+++++.+|+ ++|
T Consensus       218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw  293 (588)
T 2j04_A          218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVL  293 (588)
T ss_dssp             EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEE
T ss_pred             eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEE
Confidence            3445 4788999999999  68888887 699999999998874444479999999999  999999999999999 999


Q ss_pred             ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640         480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG  559 (616)
Q Consensus       480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~  559 (616)
                      ....                    ++++|++..+++.  |+.+++|+.....  ...+. +...|.+++|||||+.+|++
T Consensus       294 ~~d~--------------------~~~spd~~l~a~~--d~~v~lW~~~g~~--l~~~~-~~~~I~~va~SPdG~~lA~~  348 (588)
T 2j04_A          294 LEDE--------------------LHVTADNIIAPYL--EKKFKKWSTIWNE--FNNYE-TTLVIHGISLSPDGYSIAIV  348 (588)
T ss_dssp             ESSS--------------------EEEECCCSSHHHH--HHHHHHTTTTTTS--SSSSC-CEEEEEEEEECTTSSEEEEE
T ss_pred             eecc--------------------EEECCCceEEEEc--CCEEEEEECCCCc--eeeec-cceEEEEEEECCCCCEEEEE
Confidence            9862                    5689999988885  9999999986542  22333 36679999999999999998


Q ss_pred             EC
Q psy3640         560 SQ  561 (616)
Q Consensus       560 s~  561 (616)
                      +.
T Consensus       349 ~~  350 (588)
T 2j04_A          349 YD  350 (588)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-37  Score=313.34  Aligned_cols=297  Identities=18%  Similarity=0.283  Sum_probs=250.0

Q ss_pred             ecccCCcceEEEEECCC----CCEEEEEECCCcEEEEECCCCcEEEEEec-----cCCcEEEEEEcCC----CC-EEEEE
Q psy3640         182 MLKSHLLPLTNITFDKF----GTRCLTGSYDRTCKLWDIKSGHEICTYRG-----HQNVVYAVAFSEP----YG-CLTGS  247 (616)
Q Consensus       182 ~l~~h~~~i~~v~~s~~----g~~lasgs~dg~i~iwd~~~~~~~~~~~~-----h~~~I~~l~fs~~----~~-lls~s  247 (616)
                      ...+|..+|++++|+|+    ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    +. +++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            44589999999999984    45677777777999999999888777764     5578999999999    44 55999


Q ss_pred             CCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe---eece---eeEEEcCC
Q psy3640         248 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY---RGHS---AEVTFSPD  321 (616)
Q Consensus       248 ~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~---~~v~~~~~  321 (616)
                      .||.|++||+.+++.+..+.+|...|.+++|+|.+++++++++.||.|++||+.+++.+..+   .+|.   ..++|+|+
T Consensus        93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  172 (366)
T 3k26_A           93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL  172 (366)
T ss_dssp             TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT
T ss_pred             CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC
Confidence            99999999999999999999999999999999448999999999999999999999988887   4454   44589999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeEEee----------------------------cCCcCEEEEEEcCCCCEEEEEECC
Q psy3640         322 QSTFCSCSMDHTARIFNTNSGQEMHTLK----------------------------AHTGPVISLQFSSDRNMLITGSFD  373 (616)
Q Consensus       322 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------------------~~~~~v~~l~~~~~~~~l~~g~~d  373 (616)
                      +.++++++.||.|++||+++++....+.                            .|...|.+++|+  ++++++++.|
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d  250 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE  250 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC
Confidence            9999999999999999999876544333                            399999999998  6799999999


Q ss_pred             CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC--CCEEEEEeCCCcEEEEeCCCCe----EEEE
Q psy3640         374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NSMIASSSLDGTAKLWDVRTMC----CFYT  447 (616)
Q Consensus       374 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~----~~~~  447 (616)
                      +.|++||++..........  ........+..+..|...+.+++|+|+  +++|++|+.||.|++||+.+++    ....
T Consensus       251 ~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  328 (366)
T 3k26_A          251 NAIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT  328 (366)
T ss_dssp             SEEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred             CEEEEEeCCCccccccccc--cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence            9999999875432211111  111122457778889999999999999  9999999999999999999875    4446


Q ss_pred             eecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         448 LKNH--EDEVLDIAFDYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       448 ~~~~--~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      +..|  ...|.+++|+|++++|++++.||.|++||+.
T Consensus       329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            7777  7899999999999999999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2e-37  Score=312.36  Aligned_cols=294  Identities=13%  Similarity=0.103  Sum_probs=225.7

Q ss_pred             CCcEEEEEEcCCCCEE-EEECC-------CcEEEEeCCCCce----------EEEeeCCCCcEEEEEEeCCCCCEEEEEE
Q psy3640         229 QNVVYAVAFSEPYGCL-TGSYD-------RTCKLWDIKSGHE----------ICTYRGHQNVVYAVAFSEPYGDKILTGS  290 (616)
Q Consensus       229 ~~~I~~l~fs~~~~ll-s~s~d-------~~I~iwd~~~~~~----------~~~~~~h~~~V~~l~~~~~~~~~l~s~s  290 (616)
                      ..||++++|+||+++| +|+.+       +.|++|++..+..          ...+.+|...|.+++++   ++.+++|.
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g~   90 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVGC   90 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEEC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEEE
Confidence            4689999999999977 55543       3599999876532          13466888899999876   67888877


Q ss_pred             CCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeE----E-----eecCCcCEEEEEEc
Q psy3640         291 FDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMH----T-----LKAHTGPVISLQFS  361 (616)
Q Consensus       291 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~-----~~~~~~~v~~l~~~  361 (616)
                      .++..++|+                            ++.|+.+++|++.+.....    .     ...+...+.+++|+
T Consensus        91 ~~~~~~l~s----------------------------~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS  142 (365)
T 4h5i_A           91 NENSTKITQ----------------------------GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS  142 (365)
T ss_dssp             CCCHHHHHH----------------------------TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred             CCCccEEEE----------------------------ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence            665544443                            3345556666654432211    1     11234568899999


Q ss_pred             CCCCEEEEEE--CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeC
Q psy3640         362 SDRNMLITGS--FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDV  439 (616)
Q Consensus       362 ~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  439 (616)
                      |||+++++++  .|++|++||+.                ...++..+. |...|.+++|+|+++++++++.+ .+.+|+.
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~----------------~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~  204 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPS----------------DLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVIST  204 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETT----------------TTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEeECC----------------CCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEe
Confidence            9999987655  68999999997                556666554 77889999999999999999855 5667776


Q ss_pred             CCCeEEEE--eecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE
Q psy3640         440 RTMCCFYT--LKNHEDEVLDIAFDYSGSKLATASSDQ----TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL  513 (616)
Q Consensus       440 ~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  513 (616)
                      .++.....  ...|...|.+++|+|+++.+++++.|+    .++.|++......                          
T Consensus       205 ~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~--------------------------  258 (365)
T 4h5i_A          205 VTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS--------------------------  258 (365)
T ss_dssp             TTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE--------------------------
T ss_pred             ccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec--------------------------
Confidence            66655433  345778899999999999999998876    4566665432110                          


Q ss_pred             EEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe-ccCcccEEEEEEe
Q psy3640         514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL-KAHEDDVFSCGFN  592 (616)
Q Consensus       514 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s  592 (616)
                                       ......+.+|..+|++++|+|||++||+|+.|++|+|||+++++++..+ .+|..+|++++|+
T Consensus       259 -----------------~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fS  321 (365)
T 4h5i_A          259 -----------------VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTIS  321 (365)
T ss_dssp             -----------------EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEEC
T ss_pred             -----------------ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEEC
Confidence                             1233456789999999999999999999999999999999999999875 7999999999999


Q ss_pred             eCCCEEEEeeCCCcEEEcccCC
Q psy3640         593 YNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       593 ~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      |||++|||+|.|++|+||++..
T Consensus       322 pdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          322 PDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999999999999999964

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.3e-37  Score=315.01  Aligned_cols=304  Identities=17%  Similarity=0.247  Sum_probs=250.6

Q ss_pred             EEeCCCCceEEEeeCCCCcEEEEEEeCCCC-CEEEEEECCCeEEEEeCCCcceeEEee--ecee---eEEEcC-CCCEEE
Q psy3640         254 LWDIKSGHEICTYRGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEECIQTYR--GHSA---EVTFSP-DQSTFC  326 (616)
Q Consensus       254 iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~---~v~~~~-~~~~l~  326 (616)
                      +|++.+.+....+.+|...|.+++|+ +++ +++++|+.||.|++||+.+++....+.  +|..   .++|+| ++..++
T Consensus        57 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  135 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFDRRVTSLEWH-PTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF  135 (383)
T ss_dssp             HHHHTTCEEEEEECCCSSCEEEEEEC-SSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred             cccccccceEEeccCCCCCEEEEEEC-CCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence            44455667778889999999999999 666 999999999999999999988877765  3444   458999 789999


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecC---CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLKAH---TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI  403 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  403 (616)
                      +++.|+.|++||+.+ ..+..+..+   ...|.+++|+|++++|++++.|+.|++||+                 ...++
T Consensus       136 s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-----------------~~~~~  197 (383)
T 3ei3_B          136 VSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-----------------DGHEI  197 (383)
T ss_dssp             EEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-----------------TSCEE
T ss_pred             EEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-----------------CCCEE
Confidence            999999999999985 555555444   478999999999999999999999999998                 34567


Q ss_pred             EEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCC----CeEEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q psy3640         404 HILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRT----MCCFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTAN  477 (616)
Q Consensus       404 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~  477 (616)
                      ..+..|...|.+++|+|++. ++++++.|+.|++||+++    +..+..+ .|...|.+++|+| ++.+|++++.|+.|+
T Consensus       198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~  276 (383)
T 3ei3_B          198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIR  276 (383)
T ss_dssp             EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEE
T ss_pred             EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEE
Confidence            78889999999999999999 999999999999999987    6666666 6999999999999 999999999999999


Q ss_pred             EEecCCceeeeeEEeccCCC----eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640         478 LWTVGGAVELLQTFYGHSNE----VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG  553 (616)
Q Consensus       478 iwd~~~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg  553 (616)
                      +||+.+.... ..+..+...    ...+. +.|+                                ..+.+..++|+|++
T Consensus       277 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~--------------------------------p~~~~~~~~~s~dg  322 (383)
T 3ei3_B          277 VYSSYDWSKP-DQIIIHPHRQFQHLTPIK-ATWH--------------------------------PMYDLIVAGRYPDD  322 (383)
T ss_dssp             EEETTBTTSC-SEEEECCBCCCTTSCCCC-CEEC--------------------------------SSSSEEEEECBCCT
T ss_pred             EEECCCCccc-cccccccccccccccceE-Eecc--------------------------------CCCCceEEEecCCc
Confidence            9999875332 222222111    00000 1111                                23456678889999


Q ss_pred             CEEEEEECCCcEEEecCCcCeeeeEecc--CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         554 KLVLSGSQDTTCRLWSTESGECIQVLKA--HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       554 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      ++  +|+.||.|++||+.+++++..+.+  |...+..++|+|++++|++++ ||.|++|++.+
T Consensus       323 ~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          323 QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            88  889999999999999999999987  457777789999999999997 99999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.7e-39  Score=324.80  Aligned_cols=343  Identities=14%  Similarity=0.120  Sum_probs=238.0

Q ss_pred             eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeC
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDI  257 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~--~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~  257 (616)
                      ..++.|..+|++++|+|+|++||+|+.||.|+|||+.++  +.+..+.+|...|.+++|+|++. +++++.|++|++||+
T Consensus         5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            345567889999999999999999999999999999998  77788999999999999999988 559999999999999


Q ss_pred             CCCc---eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcE
Q psy3640         258 KSGH---EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       258 ~~~~---~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i  334 (616)
                      .+++   ....+.+|...|.+++|+ |++++|++++.|+.|++||+.+++..                            
T Consensus        85 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~----------------------------  135 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDW----------------------------  135 (377)
T ss_dssp             ----CCCCEEECCCCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----C----------------------------
T ss_pred             CCCCceeeeeEecccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccc----------------------------
Confidence            9987   677888899999999999 78888888888888888887644310                            


Q ss_pred             EEEECCCCceeEEeec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc--cccccCCcceEEEecCcc
Q psy3640         335 RIFNTNSGQEMHTLKA-HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE--STYRASHKPIHILTGHSQ  411 (616)
Q Consensus       335 ~i~d~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  411 (616)
                              .....+.. |...|.+++|+|++++|++++.|+.|++||+............  ............+ .|..
T Consensus       136 --------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  206 (377)
T 3dwl_C          136 --------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG  206 (377)
T ss_dssp             --------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS
T ss_pred             --------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc
Confidence                    12334445 8899999999999999999999999999998632211100000  0000012334444 8999


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-e
Q psy3640         412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC----FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-E  486 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~  486 (616)
                      .|.+++|+|++++|++++.||.|++||+++++.    +..+..|...|.+++|+|++++|++++.++.+ +|+..... .
T Consensus       207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~  285 (377)
T 3dwl_C          207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWA  285 (377)
T ss_dssp             SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---C
T ss_pred             eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceE
Confidence            999999999999999999999999999999877    77888999999999999999999888766555 77665322 1


Q ss_pred             eeeEEeccCCCe------------eeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC-
Q psy3640         487 LLQTFYGHSNEV------------SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG-  553 (616)
Q Consensus       487 ~~~~~~~~~~~~------------~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg-  553 (616)
                      ....+.......            .....+.|++....+......+...        ........|...|+++++.+.. 
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~H~~~i~~~~~~~~~~  357 (377)
T 3dwl_C          286 HTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ--------SISSLPTVHQNMIATLRPYAGTP  357 (377)
T ss_dssp             CSBCCCSCCCCCCBSSSSSBCCCCCC---------------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred             EEeeecccccccccccccccccccccccccccccccccccchhhccccc--------cccccCccccceeEEEeccCCCC
Confidence            111111111100            0122233333222222111111110        1122344699999999976654 


Q ss_pred             C---EEEEEECCCcEEEecC
Q psy3640         554 K---LVLSGSQDTTCRLWST  570 (616)
Q Consensus       554 ~---~l~s~s~dg~i~iwd~  570 (616)
                      .   .|+||+.||.|++||+
T Consensus       358 ~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          358 GNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             TEEEEEEEEETTSEEEEECC
T ss_pred             CceEEEEeecCCCcEEEecC
Confidence            3   6999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.5e-38  Score=323.26  Aligned_cols=312  Identities=13%  Similarity=0.181  Sum_probs=230.6

Q ss_pred             hhhhheecccCCcceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEE
Q psy3640         176 RYEKFKMLKSHLLPLTNITFDK-FGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKL  254 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i~~v~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~i  254 (616)
                      .+.......+|...|+||+|+| ++++||+|+.||+|+|||+.+++....                              
T Consensus       108 ~~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~------------------------------  157 (435)
T 4e54_B          108 SYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF------------------------------  157 (435)
T ss_dssp             TTTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE------------------------------
T ss_pred             ceeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE------------------------------
Confidence            4555667788999999999999 567999999999999999876643321                              


Q ss_pred             EeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec-----eeeEEEcCCCCEEEEEe
Q psy3640         255 WDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH-----SAEVTFSPDQSTFCSCS  329 (616)
Q Consensus       255 wd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~l~~~~  329 (616)
                               ..+.+|.+.|++++|+|.++++|++++.||+|++||++++........+     ...++|+|++.++++|+
T Consensus       158 ---------~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  228 (435)
T 4e54_B          158 ---------IKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD  228 (435)
T ss_dssp             ---------ECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC
T ss_pred             ---------EEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe
Confidence                     2234566666667776445667777777777777777655433322222     23568999999999999


Q ss_pred             CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640         330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG  408 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (616)
                      .||.|++||++ ++.+..+.+|...|.+++|+|++. ++++|+.|+.|++||++...             .........+
T Consensus       229 ~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~-------------~~~~~~~~~~  294 (435)
T 4e54_B          229 NVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR-------------GKASFLYSLP  294 (435)
T ss_dssp             SSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC-------------SSSCCSBCCB
T ss_pred             CCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc-------------ccceEEEeee
Confidence            99999999986 456778889999999999999876 78899999999999997432             1122233457


Q ss_pred             CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC------CEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         409 HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED------EVLDIAFDYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       409 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      |...|.+++|+|++.+|++++.||.|++||++++.....+..|..      .+....|+|++..++++..          
T Consensus       295 h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  364 (435)
T 4e54_B          295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY----------  364 (435)
T ss_dssp             CSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC----------
T ss_pred             ccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEc----------
Confidence            899999999999999999999999999999999887777765543      2334566676666655532          


Q ss_pred             CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE-EeCCCcEEEEecCCceEEeEEeeccccCEEEE-EEecCCCEEEEEE
Q psy3640         483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT-ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV-SFHPTGKLVLSGS  560 (616)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~s  560 (616)
                                               +++..+++ +..++.|++||..++........+|...|.++ +|+|+|++|++|+
T Consensus       365 -------------------------~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~  419 (435)
T 4e54_B          365 -------------------------PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM  419 (435)
T ss_dssp             -------------------------CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred             -------------------------CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence                                     22222222 23456789999988655555556788889887 6999999999876


Q ss_pred             CCCcEEEecCCcCeee
Q psy3640         561 QDTTCRLWSTESGECI  576 (616)
Q Consensus       561 ~dg~i~iwd~~~~~~~  576 (616)
                       |+.|+||++++++..
T Consensus       420 -d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          420 -GYHILIWSQQEARTR  434 (435)
T ss_dssp             -SSEEEECCCC-----
T ss_pred             -CCcEEEEECCcCeee
Confidence             789999999988753

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-36  Score=308.79  Aligned_cols=288  Identities=15%  Similarity=0.189  Sum_probs=235.9

Q ss_pred             eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc--eeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECC
Q psy3640         266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE--CIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTN  340 (616)
Q Consensus       266 ~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~  340 (616)
                      +..|.++|++++|+ ++++++++++.|+.|++||+.+++  .+..+.+|...   ++|+|+++++++++.||.|++||+.
T Consensus         4 ~~~~~~~i~~~~~s-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            45689999999999 889999999999999999999987  78888777654   5899999999999999999999998


Q ss_pred             CCceeEE--eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEE
Q psy3640         341 SGQEMHT--LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF  418 (616)
Q Consensus       341 ~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  418 (616)
                      +++....  +..|...|.+++|+|++++|++++.|+.|++||++....            ..........|...+.+++|
T Consensus        83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~------------~~~~~~~~~~~~~~i~~~~~  150 (372)
T 1k8k_C           83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND------------WWVCKHIKKPIRSTVLSLDW  150 (372)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT------------EEEEEEECTTCCSCEEEEEE
T ss_pred             CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc------------ceeeeeeecccCCCeeEEEE
Confidence            8875444  367899999999999999999999999999999973210            00122333567899999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCC------------------CCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640         419 NFSNSMIASSSLDGTAKLWDVR------------------TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT  480 (616)
Q Consensus       419 ~~~~~~l~~~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  480 (616)
                      +|+++++++++.||.|++||++                  .++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus       151 ~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  230 (372)
T 1k8k_C          151 HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD  230 (372)
T ss_dssp             CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            9999999999999999999954                  6677788888888888888888888888888888888888


Q ss_pred             cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640         481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS  560 (616)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s  560 (616)
                      +.+.                                               ..+..+..|..+|++++|+|++++|++| 
T Consensus       231 ~~~~-----------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-  262 (372)
T 1k8k_C          231 ADKK-----------------------------------------------MAVATLASETLPLLAVTFITESSLVAAG-  262 (372)
T ss_dssp             GGGT-----------------------------------------------TEEEEEECSSCCEEEEEEEETTEEEEEE-
T ss_pred             CCCC-----------------------------------------------ceeEEEccCCCCeEEEEEecCCCEEEEE-
Confidence            7653                                               2334455677788888888888777776 


Q ss_pred             CCCcEEEecCCc--Ce--------------------------------ee------eEe-ccCcccEEEEEEe-eCC---
Q psy3640         561 QDTTCRLWSTES--GE--------------------------------CI------QVL-KAHEDDVFSCGFN-YNG---  595 (616)
Q Consensus       561 ~dg~i~iwd~~~--~~--------------------------------~~------~~~-~~h~~~V~~l~~s-~~~---  595 (616)
                      .|+.|++|++.+  ++                                ..      ..+ .+|.++|++++|. ++|   
T Consensus       263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~  342 (372)
T 1k8k_C          263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC  342 (372)
T ss_dssp             TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSC
T ss_pred             eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcce
Confidence            788888888876  42                                11      223 4899999999976 566   


Q ss_pred             CEEEEeeCCCcEEEcccCC
Q psy3640         596 DTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       596 ~~l~t~s~Dg~i~vW~~~~  614 (616)
                      ++|+|++.||+|++|++.+
T Consensus       343 ~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          343 SQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             SEEEEEETTSEEEEEEHHH
T ss_pred             eeEEEecCCCceEEEEecC
Confidence            8999999999999999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=306.81  Aligned_cols=293  Identities=17%  Similarity=0.245  Sum_probs=240.7

Q ss_pred             EEeeCCCCcEEEEEEeCCCCC-EEEEEEC---CCeEEEEeCCCcceeEEee-ec---eeeEEEcCC---CCEEEEEeCCC
Q psy3640         264 CTYRGHQNVVYAVAFSEPYGD-KILTGSF---DKTLKLWASAKEECIQTYR-GH---SAEVTFSPD---QSTFCSCSMDH  332 (616)
Q Consensus       264 ~~~~~h~~~V~~l~~~~~~~~-~l~s~s~---dg~i~iwd~~~~~~~~~~~-~~---~~~v~~~~~---~~~l~~~~~dg  332 (616)
                      ..+.+|...|.+++|+ |++. ++++++.   |+.|++||+.+++...... +|   ...++|+|+   +.++++++.||
T Consensus        12 ~~~~~h~~~v~~~~~~-p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWV-PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEECSSCEEEEEEC-TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhccCCCCceEEEEEc-CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            4457899999999999 6665 5556665   8999999999987654432 33   345689998   69999999999


Q ss_pred             cEEEEECCCCc-eeEEeecCCcCEEEEEE------cCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         333 TARIFNTNSGQ-EMHTLKAHTGPVISLQF------SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       333 ~i~i~d~~~~~-~~~~~~~~~~~v~~l~~------~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      .|++||+.+++ .+..+.+|...|.+++|      +|++++|++++.||.|++||++..               ..+...
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~---------------~~~~~~  155 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK---------------DDPVAN  155 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC---------------SSCSEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC---------------CCccee
Confidence            99999999988 88999999999999955      688999999999999999999731               124555


Q ss_pred             EecCcc----ceeEEE----EccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC---CCCEEEEEeCCC
Q psy3640         406 LTGHSQ----EISNCL----FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY---SGSKLATASSDQ  474 (616)
Q Consensus       406 ~~~~~~----~i~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~~~~dg  474 (616)
                      +..+..    .+.+++    |++++.++++++.||.|++||+++++.... ..|...|.+++|+|   ++.++++++.||
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg  234 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG  234 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence            555444    788887    688999999999999999999999987544 56889999999999   899999999999


Q ss_pred             cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCC
Q psy3640         475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK  554 (616)
Q Consensus       475 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~  554 (616)
                      .|++||+.......                                          ......+.+|...|++++|+|+++
T Consensus       235 ~i~i~d~~~~~~~~------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          235 KFHVFDMRTQHPTK------------------------------------------GFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             EEEEEEEEEEETTT------------------------------------------EEEEEEEECCSSCEEEEEEETTEE
T ss_pred             eEEEEeCcCCCccc------------------------------------------ceeeeccCCCcCCEEEEEECCCCC
Confidence            99999986531110                                          011124557999999999999998


Q ss_pred             -EEEEEECCCcEEEecCCcC-------------------eeeeEeccCcccEEEEEEeeCCCEEE-EeeCCCcEEEcccC
Q psy3640         555 -LVLSGSQDTTCRLWSTESG-------------------ECIQVLKAHEDDVFSCGFNYNGDTII-TASKDNTCCIWRSM  613 (616)
Q Consensus       555 -~l~s~s~dg~i~iwd~~~~-------------------~~~~~~~~h~~~V~~l~~s~~~~~l~-t~s~Dg~i~vW~~~  613 (616)
                       +|++++.||.|++||+.++                   +.+..+.+|.++|.+++|+|++++|+ +++.||.|++|++.
T Consensus       273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence             8999999999999999754                   46778889999999999999999998 89999999999997


Q ss_pred             CC
Q psy3640         614 NR  615 (616)
Q Consensus       614 ~~  615 (616)
                      +.
T Consensus       353 ~~  354 (357)
T 3i2n_A          353 KL  354 (357)
T ss_dssp             C-
T ss_pred             Cc
Confidence            64

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.1e-35  Score=306.51  Aligned_cols=300  Identities=19%  Similarity=0.329  Sum_probs=242.3

Q ss_pred             cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee--CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640         231 VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT  308 (616)
Q Consensus       231 ~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  308 (616)
                      ....|+|++++ +|+.+.|++|+|||..+|+....+.  +|...|++++|+ +++++|++|+.||+|++||+.+++.+..
T Consensus       107 y~~~l~wS~~n-~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~~  184 (420)
T 4gga_A          107 YLNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRN  184 (420)
T ss_dssp             TCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             cceeEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence            45679999765 6666679999999999999877664  678899999999 8999999999999999999999999999


Q ss_pred             eeeceeeE-EEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccC
Q psy3640         309 YRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTNSG-QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFG  386 (616)
Q Consensus       309 ~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~  386 (616)
                      +.+|...+ ++++++..+++|+.|+.+.+||.... ..+..+.+|...+..+.++|+++++++++.|+.+++|+......
T Consensus       185 ~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~  264 (420)
T 4gga_A          185 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  264 (420)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred             EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence            99988766 67788999999999999999998864 45677889999999999999999999999999999999874321


Q ss_pred             CcccccccccccCCcceEEEecCccceeEEEEccCCC-EEEE--EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640         387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIAS--SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS  463 (616)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  463 (616)
                                  ....+.....|...|.+++|+|.+. .+++  |+.|+.|++||+.++++...+.. ...+.++.|+|+
T Consensus       265 ------------~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~  331 (420)
T 4gga_A          265 ------------GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPH  331 (420)
T ss_dssp             ------------CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETT
T ss_pred             ------------cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCC
Confidence                        2345567788999999999999764 5554  35789999999999999888874 456888889998


Q ss_pred             CCEEEEEe--CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccc
Q psy3640         464 GSKLATAS--SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHS  541 (616)
Q Consensus       464 ~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~  541 (616)
                      +..+++++  .|+.|++||+.+.                                               ..+..+.+|.
T Consensus       332 ~~~lv~~sg~~d~~I~iwd~~~~-----------------------------------------------~~v~~l~gH~  364 (420)
T 4gga_A          332 YKELISGHGFAQNQLVIWKYPTM-----------------------------------------------AKVAELKGHT  364 (420)
T ss_dssp             TTEEEEEECTTTCCEEEEETTTC-----------------------------------------------CEEEEECCCS
T ss_pred             CCeEEEEEecCCCEEEEEECCCC-----------------------------------------------cEEEEEcCCC
Confidence            88887765  5777777777542                                               4556678999


Q ss_pred             cCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEe
Q psy3640         542 NEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFN  592 (616)
Q Consensus       542 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  592 (616)
                      +.|++++|+|||++|+||+.|++|+|||+....+....+.+...+....|.
T Consensus       365 ~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~  415 (420)
T 4gga_A          365 SRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI  415 (420)
T ss_dssp             SCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence            999999999999999999999999999998877776666665554444443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=304.05  Aligned_cols=332  Identities=18%  Similarity=0.243  Sum_probs=242.6

Q ss_pred             hhheecccCCcceEEEEECC-CCCEEEEEECCCcEEEEECCCCcEEEEEe-------------ccCCcEEEEEEcC-CCC
Q psy3640         178 EKFKMLKSHLLPLTNITFDK-FGTRCLTGSYDRTCKLWDIKSGHEICTYR-------------GHQNVVYAVAFSE-PYG  242 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~-~g~~lasgs~dg~i~iwd~~~~~~~~~~~-------------~h~~~I~~l~fs~-~~~  242 (616)
                      .....+++|.++|++++|+| ++++||+|+.||.|++||+.+++....+.             +|...|.+++|+| ++.
T Consensus        34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  113 (408)
T 4a11_B           34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG  113 (408)
T ss_dssp             TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred             cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence            44577889999999999999 99999999999999999999886654443             5999999999999 554


Q ss_pred             -EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCC--CCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eE
Q psy3640         243 -CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP--YGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EV  316 (616)
Q Consensus       243 -lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v  316 (616)
                       +++++.|+.|++||+.+++....+. +...+.++.+++.  ++.++++++.|+.|++||+.+++.+..+.+|..   .+
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence             6699999999999999999988887 7889999999843  445999999999999999999999988887765   45


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEECCCCc-eeEEe---------------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy3640         317 TFSPDQS-TFCSCSMDHTARIFNTNSGQ-EMHTL---------------KAHTGPVISLQFSSDRNMLITGSFDSSIVVW  379 (616)
Q Consensus       317 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iw  379 (616)
                      +|+|++. .+++++.||.|++||++++. ....+               ..|...|.+++|+|++++|++++.||.|++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            8999998 58999999999999998765 34444               5688999999999999999999999999999


Q ss_pred             ecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEE
Q psy3640         380 DIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA  459 (616)
Q Consensus       380 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  459 (616)
                      |+...........           .........+........+..+++++.++.|++||+.+++.+..+.+|...|.+++
T Consensus       273 d~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~  341 (408)
T 4a11_B          273 NSSNGENTLVNYG-----------KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCV  341 (408)
T ss_dssp             ETTTCCBCCCCCC-----------CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             ECCCCccceeccc-----------cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence            9974322111000           00001111122222234456677778899999999999999999999999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEecC
Q psy3640         460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY-SGSKLATASSDQTAKLWTVG  528 (616)
Q Consensus       460 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~  528 (616)
                      |+|++++|++++.||.|++|++..............       ...+.+ ........+.++.+++|+..
T Consensus       342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          342 FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTT-------KSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred             EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEe-------ccccccccceeecccCccCceeecCCc
Confidence            999999999999999999999987643322111110       112222 33445567788999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-37  Score=320.23  Aligned_cols=283  Identities=11%  Similarity=0.218  Sum_probs=249.2

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCC----CcEEEEEeccCCcEEEEEEcCC-CC-EEEEECCCcEEEEeCC
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKS----GHEICTYRGHQNVVYAVAFSEP-YG-CLTGSYDRTCKLWDIK  258 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~----~~~~~~~~~h~~~I~~l~fs~~-~~-lls~s~d~~I~iwd~~  258 (616)
                      .|..+|++++|+|++++||+|+.||.|++||+.+    .+.+..+.+|...|.+++|+|+ +. +++++.|+.|++||+.
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~  144 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN  144 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence            5899999999999999999999999999999988    4588899999999999999998 56 5589999999999999


Q ss_pred             CCc------eEEE---eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec---------eeeEEEcC
Q psy3640         259 SGH------EICT---YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH---------SAEVTFSP  320 (616)
Q Consensus       259 ~~~------~~~~---~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~  320 (616)
                      +++      ....   +..|...|.+++|+|..+..+++++.|+.|++||+.+++.+..+..+         ...++|+|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  224 (416)
T 2pm9_A          145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP  224 (416)
T ss_dssp             TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred             CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence            887      3333   36799999999999444899999999999999999999988888654         34568999


Q ss_pred             CC-CEEEEEeCCC---cEEEEECCCC-ceeEEee-cCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640         321 DQ-STFCSCSMDH---TARIFNTNSG-QEMHTLK-AHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       321 ~~-~~l~~~~~dg---~i~i~d~~~~-~~~~~~~-~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      ++ .++++++.++   .|++||++++ .....+. +|...|.+++|+| ++++|++++.||.|++||++           
T Consensus       225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~-----------  293 (416)
T 2pm9_A          225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE-----------  293 (416)
T ss_dssp             SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS-----------
T ss_pred             CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC-----------
Confidence            97 6899999998   9999999986 6677777 8999999999999 89999999999999999998           


Q ss_pred             cccccCCcceEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeec----------------------
Q psy3640         394 STYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKN----------------------  450 (616)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------  450 (616)
                           ...++..+..|...+.+++|+|++ .++++++.||.|++||+.+.........                      
T Consensus       294 -----~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (416)
T 2pm9_A          294 -----SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK  368 (416)
T ss_dssp             -----SCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CC
T ss_pred             -----CCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence                 677888899999999999999998 8999999999999999987653222111                      


Q ss_pred             -------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         451 -------------HEDEVLDIAFDYSGSKLATASSDQTANLWTVGG  483 (616)
Q Consensus       451 -------------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  483 (616)
                                   +..++.+++|+|+|++|++++.|+.|++|++.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             cccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence                         566778999999999999999999999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-35  Score=290.50  Aligned_cols=253  Identities=23%  Similarity=0.339  Sum_probs=208.1

Q ss_pred             eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCC--CcEEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEEEE
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKS--GHEICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCKLW  255 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~--~~~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~iw  255 (616)
                      ..+.+|...|++++|+|+|++||+|+.|++|+|||+.+  ++.+.++.+|.++|.+++|+++  +. +++++.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            46789999999999999999999999999999999974  4678899999999999999864  55 5699999999999


Q ss_pred             eCCCCc--eEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCC
Q psy3640         256 DIKSGH--EICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMD  331 (616)
Q Consensus       256 d~~~~~--~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~d  331 (616)
                      |+.+++  .+..+.+|...|.+++|+ |+  +.+|++++.|++|++||++++...                         
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~g~~l~s~s~d~~v~~wd~~~~~~~-------------------------  136 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPMLLVASSDGKVSVVEFKENGTT-------------------------  136 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEEBCSSSCB-------------------------
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeC-cCCCCcEEEEEECCCcEEEEEecCCCce-------------------------
Confidence            999874  567788899999999999 54  788999999999988887654210                         


Q ss_pred             CcEEEEECCCCceeEEeecCCcCEEEEEEcCC-------------CCEEEEEECCCcEEEEecccccCCccccccccccc
Q psy3640         332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSD-------------RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRA  398 (616)
Q Consensus       332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~-------------~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~  398 (616)
                                  ....+.+|...|.+++|+|+             +++|++|+.|++|++||++....            
T Consensus       137 ------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~------------  192 (297)
T 2pm7_B          137 ------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------  192 (297)
T ss_dssp             ------------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT------------
T ss_pred             ------------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc------------
Confidence                        01223456667777777765             57999999999999999872100            


Q ss_pred             CCcceEEEecCccceeEEEEccCC---CEEEEEeCCCcEEEEeCCCCe---EEEEe--ecCCCCEEEEEEcCCCCEEEEE
Q psy3640         399 SHKPIHILTGHSQEISNCLFNFSN---SMIASSSLDGTAKLWDVRTMC---CFYTL--KNHEDEVLDIAFDYSGSKLATA  470 (616)
Q Consensus       399 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---~~~~~--~~~~~~v~~l~~~~~~~~l~~~  470 (616)
                      .......+.+|...|.+++|+|++   .+|++++.|++|++||+++..   ....+  ..|...|.+++|+|++++|+++
T Consensus       193 ~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~  272 (297)
T 2pm7_B          193 TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (297)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             eEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence            112456788999999999999984   899999999999999987642   12233  4678899999999999999999


Q ss_pred             eCCCcEEEEecCC
Q psy3640         471 SSDQTANLWTVGG  483 (616)
Q Consensus       471 ~~dg~i~iwd~~~  483 (616)
                      +.|+.|++|+...
T Consensus       273 ~~D~~v~lw~~~~  285 (297)
T 2pm7_B          273 GGDNKVTLWKENL  285 (297)
T ss_dssp             ETTSCEEEEEECT
T ss_pred             cCCCcEEEEEECC
Confidence            9999999999763

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-35  Score=303.82  Aligned_cols=288  Identities=19%  Similarity=0.291  Sum_probs=244.6

Q ss_pred             eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK  258 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~-h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~  258 (616)
                      ....+|...+...++++++..+++++.||.|++||+.+++....+.. |...|.+++|+|++.++ +++.||.|++||+.
T Consensus        85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             EECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            34457776644433443446788999999999999999999888876 89999999999999855 88999999999999


Q ss_pred             CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC-CcceeEEeeeceee---EEEcCCCCEEEEEeCCCcE
Q psy3640         259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA-KEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i  334 (616)
                      +++.+..+.+|...|.+++|+   ++.+++++.||.|++||++ .......+.+|...   ++|+|++.++++++.||.|
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v  241 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVV  241 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeE
Confidence            999999999999999999996   5899999999999999999 45667777766554   5899999999999999999


Q ss_pred             EEEECCCCceeEEeecCCcCEEEEEEcCCC-CEEEEEE--CCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640         335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDR-NMLITGS--FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ  411 (616)
Q Consensus       335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (616)
                      ++||+.+++....+..|...|.+++|+|++ .++++++  .|+.|++||+.                .......+. +..
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~----------------~~~~~~~~~-~~~  304 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA----------------TGARVNTVD-AGS  304 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT----------------TCCEEEEEE-CSS
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC----------------CCCEEEEEe-CCC
Confidence            999999999999999999999999999976 4666655  79999999997                555555554 667


Q ss_pred             ceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEEE--EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee
Q psy3640         412 EISNCLFNFSNSMIASSS--LDGTAKLWDVRTMCCFY--TLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL  487 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  487 (616)
                      .+.+++|+|++..+++++  .||.|++||+.++....  .+.+|...|.+++|+|++.+|++++.||.|++|++.++...
T Consensus       305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            899999999999999954  89999999999865544  46789999999999999999999999999999999876544


Q ss_pred             e
Q psy3640         488 L  488 (616)
Q Consensus       488 ~  488 (616)
                      .
T Consensus       385 ~  385 (401)
T 4aez_A          385 K  385 (401)
T ss_dssp             -
T ss_pred             c
Confidence            3

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.7e-35  Score=301.67  Aligned_cols=278  Identities=23%  Similarity=0.385  Sum_probs=233.1

Q ss_pred             eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccc
Q psy3640         315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  392 (616)
                      .++|+++ +.|++|. |++|++||..+++....+.  .|...|++++|+|+|++|++|+.||.|++||+.          
T Consensus       110 ~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~----------  177 (420)
T 4gga_A          110 LVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ----------  177 (420)
T ss_dssp             CEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT----------
T ss_pred             eEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC----------
Confidence            3567754 4666654 7888888888888776554  577889999999999999999999999999998          


Q ss_pred             ccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640         393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-CCFYTLKNHEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  471 (616)
                            ....+..+.+|...+.++.+  ++..+++|+.|+.+++||.... ..+..+.+|...+..+.++|++.++++++
T Consensus       178 ------~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~  249 (420)
T 4gga_A          178 ------QQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG  249 (420)
T ss_dssp             ------TTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ------CCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee
Confidence                  77888899999999988766  5789999999999999998864 56677889999999999999999999999


Q ss_pred             CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC-EEEEE--eCCCcEEEEecCCceEEeEEeeccccCEEEEE
Q psy3640         472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS-KLATA--SSDQTAKLWTVGGAVELLQTFYGHSNEVSKVS  548 (616)
Q Consensus       472 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~--~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~  548 (616)
                      .|+.+++|+....................|.+++|+|.+. .++++  +.|+.|++||+.++ .....+.. ...+.++.
T Consensus       250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~-~~~v~~~~  327 (420)
T 4gga_A          250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLSAVDA-HSQVCSIL  327 (420)
T ss_dssp             TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EEEEEEEC-SSCEEEEE
T ss_pred             ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-ccceeecc-ccceeeee
Confidence            9999999999775433222222333345688899999765 45543  47999999999985 45555554 46799999


Q ss_pred             EecCCCEEEEEE--CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         549 FHPTGKLVLSGS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       549 ~spdg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      |+|+++.+++++  .|+.|+|||+.+++++..+.+|.++|++++|+|||++|+||+.||+|+|||+.+
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            999999988865  789999999999999999999999999999999999999999999999999865

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.6e-35  Score=289.88  Aligned_cols=251  Identities=22%  Similarity=0.342  Sum_probs=213.7

Q ss_pred             EEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC--CC
Q psy3640         346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NS  423 (616)
Q Consensus       346 ~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~  423 (616)
                      ..+.+|...|.+++|+|+|++|++|+.|++|++||+...              ....+..+.+|..+|.+++|+++  ++
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~--------------~~~~~~~l~gH~~~V~~v~~s~~~~g~   68 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPKFGT   68 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS--------------CBCCCEEECCCSSCEEEEEECCGGGCS
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC--------------CcEEEEEEccccCCeEEEEecCCCcCC
Confidence            456789999999999999999999999999999998621              23567788999999999999863  89


Q ss_pred             EEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCcee-eeeEEeccCCCe
Q psy3640         424 MIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVE-LLQTFYGHSNEV  498 (616)
Q Consensus       424 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~  498 (616)
                      +|++|+.|++|++||++++.  .+..+..|...|.+++|+|+  +.+|++++.|+.|++||+..... ....+.+|..  
T Consensus        69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~--  146 (297)
T 2pm7_B           69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--  146 (297)
T ss_dssp             EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS--
T ss_pred             EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC--
Confidence            99999999999999998873  56677789999999999997  89999999999999999976532 2334445543  


Q ss_pred             eeEEEEEEcCC-------------CCEEEEEeCCCcEEEEecCCce---EEeEEeeccccCEEEEEEecCC---CEEEEE
Q psy3640         499 SKVLDIAFDYS-------------GSKLATASSDQTAKLWTVGGAV---ELLQTFYGHSNEVSKVSFHPTG---KLVLSG  559 (616)
Q Consensus       499 ~~i~~~~~s~~-------------~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spdg---~~l~s~  559 (616)
                       .+.+++|+|+             +++|++|+.|+.|++||+.+..   .....+.+|...|.+++|+|++   ++|+++
T Consensus       147 -~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~  225 (297)
T 2pm7_B          147 -GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV  225 (297)
T ss_dssp             -CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             -ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE
Confidence             4778999997             5799999999999999987542   2566788999999999999995   899999


Q ss_pred             ECCCcEEEecCCcCe---eeeEe--ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         560 SQDTTCRLWSTESGE---CIQVL--KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       560 s~dg~i~iwd~~~~~---~~~~~--~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      +.|++|++||++++.   ....+  ..|...|.+++|+|++++||+++.||+|++|+..
T Consensus       226 s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             ETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence            999999999998753   12233  5688899999999999999999999999999976

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.1e-35  Score=298.45  Aligned_cols=291  Identities=17%  Similarity=0.328  Sum_probs=244.2

Q ss_pred             eccCC--cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC-CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC
Q psy3640         226 RGHQN--VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK  302 (616)
Q Consensus       226 ~~h~~--~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~  302 (616)
                      .+|..  .+.++.|++ +.+++++.|+.|++||+.+++....+.. |...|.+++|+ +++++|++|+.||.|++||+.+
T Consensus        88 ~~~~~~~~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~  165 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS-HDGSFLSVGLGNGLVDIYDVES  165 (401)
T ss_dssp             TTCCCCTTCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTT
T ss_pred             CCCcCCceEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEEC-CCCCEEEEECCCCeEEEEECcC
Confidence            34544  356678886 4588999999999999999998887776 88999999999 7899999999999999999999


Q ss_pred             cceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEEEECC-CCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEe
Q psy3640         303 EECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTN-SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD  380 (616)
Q Consensus       303 ~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd  380 (616)
                      ++.+..+.+|...+ ++..++..+++++.||.|++||++ .+.....+..|...|.+++|+|++++|++|+.|+.|++||
T Consensus       166 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd  245 (401)
T 4aez_A          166 QTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD  245 (401)
T ss_dssp             CCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEcc
Confidence            99999998877665 333477899999999999999998 5677888899999999999999999999999999999999


Q ss_pred             cccccCCcccccccccccCCcceEEEecCccceeEEEEccCC-CEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCEEE
Q psy3640         381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSS--LDGTAKLWDVRTMCCFYTLKNHEDEVLD  457 (616)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~  457 (616)
                      ++                ...+...+..|...|.+++|+|++ .++++++  .|+.|++||+++++.+..+. +...|.+
T Consensus       246 ~~----------------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~  308 (401)
T 4aez_A          246 AR----------------SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTS  308 (401)
T ss_dssp             TT----------------CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEE
T ss_pred             CC----------------CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEE
Confidence            98                677788888999999999999976 4566654  69999999999999888886 6678999


Q ss_pred             EEEcCCCCEEEEEe--CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640         458 IAFDYSGSKLATAS--SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ  535 (616)
Q Consensus       458 l~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  535 (616)
                      ++|+|+++.+++++  .||.+++|++.+..                                             .....
T Consensus       309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~---------------------------------------------~~~~~  343 (401)
T 4aez_A          309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSG---------------------------------------------LTKQV  343 (401)
T ss_dssp             EEECSSSSEEEEEECTTTCEEEEEEEETTE---------------------------------------------EEEEE
T ss_pred             EEECCCCCeEEEEeecCCCcEEEEecCCcc---------------------------------------------ceeEE
Confidence            99999999998854  78889888875531                                             12233


Q ss_pred             EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec
Q psy3640         536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK  580 (616)
Q Consensus       536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~  580 (616)
                      .+.+|...|.+++|+|++++|++++.||.|++|++.+++.+....
T Consensus       344 ~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~  388 (401)
T 4aez_A          344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI  388 (401)
T ss_dssp             EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence            456799999999999999999999999999999999998876543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5e-35  Score=289.40  Aligned_cols=281  Identities=22%  Similarity=0.379  Sum_probs=236.5

Q ss_pred             eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccc
Q psy3640         314 AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAY  391 (616)
Q Consensus       314 ~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  391 (616)
                      ..++|++++ .|++| .|++|++||+.+++.+..+.  .|...|.+++|+|++++|++|+.||+|++||++         
T Consensus        29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~---------   97 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ---------   97 (318)
T ss_dssp             BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT---------
T ss_pred             eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC---------
Confidence            457888875 66665 48999999999998877664  577889999999999999999999999999998         


Q ss_pred             cccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCC-eEEEEeecCCCCEEEEEEcCCCCEEEEE
Q psy3640         392 AESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-CCFYTLKNHEDEVLDIAFDYSGSKLATA  470 (616)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~~~  470 (616)
                             ..+.+..+.+|...+.++  ++++..+++++.++.+++|+.... ..+..+.+|...+..+++++++++++++
T Consensus        98 -------~~~~~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  168 (318)
T 4ggc_A           98 -------QQKRLRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASG  168 (318)
T ss_dssp             -------TTEEEEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             -------CceeEEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEE
Confidence                   777888889998887765  456789999999999999998875 5567788999999999999999999999


Q ss_pred             eCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE---EEEeCCCcEEEEecCCceEEeEEeeccccCEEEE
Q psy3640         471 SSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL---ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV  547 (616)
Q Consensus       471 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l---~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l  547 (616)
                      +.|+.|++||+.++................+..++++|++..+   ++++.++.|++||........  ...+...+..+
T Consensus       169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~--~~~~~~~v~~~  246 (318)
T 4ggc_A          169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS--AVDAHSQVCSI  246 (318)
T ss_dssp             ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE--EEECSSCEEEE
T ss_pred             ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc--cccceeeeeee
Confidence            9999999999987544333333333444567888999877643   456778999999998754332  34577889999


Q ss_pred             EEecCCCEEEEEE--CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCCC
Q psy3640         548 SFHPTGKLVLSGS--QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD  616 (616)
Q Consensus       548 ~~spdg~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~e  616 (616)
                      .|+|+++.+++++  .|+.|++||+.+++++..+.+|.++|++++|+|++++|+|||.||+|+|||+.+.|
T Consensus       247 ~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            9999999888765  79999999999999999999999999999999999999999999999999997653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=298.45  Aligned_cols=293  Identities=18%  Similarity=0.264  Sum_probs=249.8

Q ss_pred             hhhhhheecccCCcceEEEEECCC---CCEEEEEECCCcEEEEECCC-CcEE-EEEeccCCcEEEEEEcCCCC-EEEEEC
Q psy3640         175 QRYEKFKMLKSHLLPLTNITFDKF---GTRCLTGSYDRTCKLWDIKS-GHEI-CTYRGHQNVVYAVAFSEPYG-CLTGSY  248 (616)
Q Consensus       175 ~~~~~~~~l~~h~~~i~~v~~s~~---g~~lasgs~dg~i~iwd~~~-~~~~-~~~~~h~~~I~~l~fs~~~~-lls~s~  248 (616)
                      ..+..++.+.+|...|++++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+|++. +++++.
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~  106 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC  106 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence            345567789999999999999999   69999999999999999997 5555 78899999999999999998 458999


Q ss_pred             CCcEEEEeCCCCceEEEeeCCCCcEEEEEE--eCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEE
Q psy3640         249 DRTCKLWDIKSGHEICTYRGHQNVVYAVAF--SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC  326 (616)
Q Consensus       249 d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~--~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~  326 (616)
                      |+.|++||+.+++.+. +.+|...|.+++|  + +++.++++++.||.|++||+++++.+..+..+....++.+....++
T Consensus       107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             TSEEEEEETTTTEEEE-EEECSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             CCcEEEEEcCCCCcee-eccccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence            9999999999998776 5569999999999  6 7888999999999999999999999999998887777777788999


Q ss_pred             EEeCCCcEEEEECCCCceeEEe--ecCCcCEEEEEEcCCCCE----EEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTL--KAHTGPVISLQFSSDRNM----LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~----l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                      +++.++.+.+|++.........  ..+...+.++++.++...    +++++.||.|++||++...             ..
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~-------------~~  251 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN-------------PA  251 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC-------------HH
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC-------------cc
Confidence            9999999999999876544332  223455666666555443    9999999999999997321             01


Q ss_pred             cceEEEecCcc------------ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEE
Q psy3640         401 KPIHILTGHSQ------------EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLA  468 (616)
Q Consensus       401 ~~~~~~~~~~~------------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  468 (616)
                      .....+..|..            .|.+++|+|++++|++++.||.|++||+++++++..+..|...|.+++|+|++++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  331 (368)
T 3mmy_A          252 KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA  331 (368)
T ss_dssp             HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEE
T ss_pred             ccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEE
Confidence            44555566655            799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEecC
Q psy3640         469 TASSDQTANLWTVG  482 (616)
Q Consensus       469 ~~~~dg~i~iwd~~  482 (616)
                      +++.|+..+.|++.
T Consensus       332 ~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          332 YASSYDWSKGHEFY  345 (368)
T ss_dssp             EEECCCSTTCGGGC
T ss_pred             EEeccccccccccc
Confidence            99999866665543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-36  Score=308.89  Aligned_cols=284  Identities=14%  Similarity=0.169  Sum_probs=225.1

Q ss_pred             eceeeEEEcCCCCEEEEEeCCCcEEEEECCCC--ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCc
Q psy3640         311 GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR  388 (616)
Q Consensus       311 ~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~  388 (616)
                      +....++|+|++++|++++.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+....   
T Consensus        12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~---   88 (377)
T 3dwl_C           12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG---   88 (377)
T ss_dssp             SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---------
T ss_pred             CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC---
Confidence            34456688888888888888888999998887  6777888999999999999999999999999999999997321   


Q ss_pred             ccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe---EEEEeec-CCCCEEEEEEcCCC
Q psy3640         389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC---CFYTLKN-HEDEVLDIAFDYSG  464 (616)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~-~~~~v~~l~~~~~~  464 (616)
                                ...+...+..|...|.+++|+|+++++++++.|+.|++||+++++   ....+.. |...|.+++|+|++
T Consensus        89 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  158 (377)
T 3dwl_C           89 ----------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN  158 (377)
T ss_dssp             ----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred             ----------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence                      123667778899999999999999999999999999999999887   3677777 99999999999999


Q ss_pred             CEEEEEeCCCcEEEEecCCc-----------------eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         465 SKLATASSDQTANLWTVGGA-----------------VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV  527 (616)
Q Consensus       465 ~~l~~~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  527 (616)
                      ++|++++.|+.+++||+...                 ......+    .....+.+++|+|++++|++++.||.|++||+
T Consensus       159 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~  234 (377)
T 3dwl_C          159 VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP  234 (377)
T ss_dssp             SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred             CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            99999999999999998521                 1222222    33345889999999999999999999999999


Q ss_pred             CCceE---EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCC-cCe-ee--------------------------
Q psy3640         528 GGAVE---LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE-SGE-CI--------------------------  576 (616)
Q Consensus       528 ~~~~~---~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~-~~~-~~--------------------------  576 (616)
                      .+...   .+..+.+|..+|++++|+|++++|++|+.|+.+ +|+.. ++. ..                          
T Consensus       235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (377)
T 3dwl_C          235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEG  313 (377)
T ss_dssp             CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--
T ss_pred             CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccc
Confidence            87533   266788999999999999999999999877665 66554 220 00                          


Q ss_pred             --------eE----------------eccCcccEEEEEEeeCC-C---EEEEeeCCCcEEEccc
Q psy3640         577 --------QV----------------LKAHEDDVFSCGFNYNG-D---TIITASKDNTCCIWRS  612 (616)
Q Consensus       577 --------~~----------------~~~h~~~V~~l~~s~~~-~---~l~t~s~Dg~i~vW~~  612 (616)
                              ..                ...|.+.|+++++.+.. .   .|+|+|.||.|++||+
T Consensus       314 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                    00                11399999999976553 3   6999999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.5e-35  Score=305.21  Aligned_cols=276  Identities=26%  Similarity=0.463  Sum_probs=245.2

Q ss_pred             eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCC
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKS  259 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~  259 (616)
                      ....+|...|++++|  +++++++|+.||+|++||+.+++....+.+|...|.+++|  ++. +++|+.||+|++||+.+
T Consensus       127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            334567778999888  7899999999999999999999999999999999999999  445 66999999999999999


Q ss_pred             CceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee---EEeeeceeeE-EEcCCCCEEEEEeCCCcEE
Q psy3640         260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI---QTYRGHSAEV-TFSPDQSTFCSCSMDHTAR  335 (616)
Q Consensus       260 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~  335 (616)
                      ++.+..+.+|...|.+++|+   ++.+++|+.||.|++||+.+++..   ..+.+|...+ ++..+++++++|+.||.|+
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~  279 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK  279 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEE
T ss_pred             CcEEEEEcCCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEE
Confidence            99999999999999999997   469999999999999999988765   5566666554 4445899999999999999


Q ss_pred             EEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640         336 IFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN  415 (616)
Q Consensus       336 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  415 (616)
                      +||+++++.+..+.+|...|.++++  +++++++|+.||.|++||++                ....+..+.+|...|.+
T Consensus       280 vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~----------------~~~~~~~~~~h~~~v~~  341 (435)
T 1p22_A          280 VWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE----------------CGACLRVLEGHEELVRC  341 (435)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT----------------TCCEEEEECCCSSCEEE
T ss_pred             EEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC----------------CCCEEEEEeCCcCcEEE
Confidence            9999999999999999999999999  46899999999999999998                67788889999999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCe---------EEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640         416 CLFNFSNSMIASSSLDGTAKLWDVRTMC---------CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV  485 (616)
Q Consensus       416 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  485 (616)
                      +++  ++.++++|+.||.|++||++++.         ++..+..|.+.|.+++|  ++.+|++++.||.|++||+.+..
T Consensus       342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred             EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence            988  78899999999999999997765         78889999999999999  67899999999999999997753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.9e-36  Score=313.53  Aligned_cols=296  Identities=18%  Similarity=0.236  Sum_probs=227.4

Q ss_pred             EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640         263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG  342 (616)
Q Consensus       263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~  342 (616)
                      .....+|...|++++|+|.++++||+|+.||.|++||+.+++..                                    
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------------------------------  155 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------------------------------  155 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC------------------------------------
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce------------------------------------
Confidence            34566788999999999667788889988888888887644321                                    


Q ss_pred             ceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe--cCccceeEEEEc
Q psy3640         343 QEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFN  419 (616)
Q Consensus       343 ~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~  419 (616)
                       ....+.+|.+.|.+++|+| ++++|++++.||+|++||++                .........  .+...+.+++|+
T Consensus       156 -~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~~  218 (435)
T 4e54_B          156 -TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK----------------GNILRVFASSDTINIWFCSLDVS  218 (435)
T ss_dssp             -EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT----------------SCEEEEEECCSSCSCCCCCEEEE
T ss_pred             -eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc----------------CCceeEEeccCCCCccEEEEEEC
Confidence             2223457999999999998 68999999999999999986                222222222  234457889999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCe
Q psy3640         420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEV  498 (616)
Q Consensus       420 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  498 (616)
                      +++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++. ++++++.|+.|++||+........ +.......
T Consensus       219 ~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-~~~~~~h~  296 (435)
T 4e54_B          219 ASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-FLYSLPHR  296 (435)
T ss_dssp             TTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-CSBCCBCS
T ss_pred             CCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-EEEeeecc
Confidence            9999999999999999999864 55677889999999999999876 688999999999999976533221 11112223


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecccc------CEEEEEEecCCCEEEEEE------------
Q psy3640         499 SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN------EVSKVSFHPTGKLVLSGS------------  560 (616)
Q Consensus       499 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~------~v~~l~~spdg~~l~s~s------------  560 (616)
                      ..|.+++|+|++.+|++++.||.|++||+.+.. ....+..|..      .+....|+|++.++++++            
T Consensus       297 ~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  375 (435)
T 4e54_B          297 HPVNAACFSPDGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPY  375 (435)
T ss_dssp             SCEEECCBCTTSSEEEEEESSSCEEEEESSSSS-SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTT
T ss_pred             ccccceeECCCCCeeEEEcCCCEEEEEECCCCc-cceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEec
Confidence            458899999999999999999999999998753 3333444432      233456777777766654            


Q ss_pred             CCCcEEEecCCcCeeeeEec-cCcccEEEE-EEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         561 QDTTCRLWSTESGECIQVLK-AHEDDVFSC-GFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       561 ~dg~i~iwd~~~~~~~~~~~-~h~~~V~~l-~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      .++.|++||..+++++..+. +|...|.++ +|+|+|++|++|+ |++|+||++++.
T Consensus       376 ~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          376 ELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             CCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            33579999999999988764 688888887 6999999999876 889999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-34  Score=283.37  Aligned_cols=273  Identities=20%  Similarity=0.343  Sum_probs=234.3

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEe
Q psy3640         190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTY  266 (616)
Q Consensus       190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~--~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~  266 (616)
                      .++|+||+++ +||+|. |++|+|||+.+++.++.+.  +|...|++++|+|+++++ +|+.|++|++||+++++.+..+
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            5789999986 777765 8999999999999888775  677889999999999954 9999999999999999999999


Q ss_pred             eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc-eeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640         267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSG  342 (616)
Q Consensus       267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~d~~~~  342 (616)
                      .+|...+.++.+.   +..+++++.++.+++|+..... .+..+.+|...   +.+.++++++++++.||.|++||++++
T Consensus       106 ~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          106 TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            9999999988776   6899999999999999988764 44556665544   479999999999999999999999876


Q ss_pred             ce----eEEeecCCcCEEEEEEcCCCCEE---EEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640         343 QE----MHTLKAHTGPVISLQFSSDRNML---ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN  415 (616)
Q Consensus       343 ~~----~~~~~~~~~~v~~l~~~~~~~~l---~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  415 (616)
                      +.    ......+.+.|.+++++|++..+   ++++.++.|++||..                .. .......+...+..
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~----------------~~-~~~~~~~~~~~v~~  245 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC----------------SG-ACLSAVDAHSQVCS  245 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT----------------TC-CEEEEEECSSCEEE
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc----------------cc-cccccccceeeeee
Confidence            53    45566788899999999976533   456678999999985                33 33444567788999


Q ss_pred             EEEccCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         416 CLFNFSNSMIASSS--LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA  484 (616)
Q Consensus       416 ~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  484 (616)
                      +.+++++..+++++  .|+.|++||+++++++..+.+|.+.|++++|+|++++|++++.||+|++||+.+.
T Consensus       246 ~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          246 ILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             eeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            99999999888765  7899999999999999999999999999999999999999999999999998653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.9e-36  Score=300.01  Aligned_cols=289  Identities=16%  Similarity=0.145  Sum_probs=212.2

Q ss_pred             CcceEEEEECCCCCEEEEEECCC-------cEEEEECCCCcE----------EEEEeccCCcEEEEEEcCCCCEEEEECC
Q psy3640         187 LLPLTNITFDKFGTRCLTGSYDR-------TCKLWDIKSGHE----------ICTYRGHQNVVYAVAFSEPYGCLTGSYD  249 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasgs~dg-------~i~iwd~~~~~~----------~~~~~~h~~~I~~l~fs~~~~lls~s~d  249 (616)
                      .-||++++|+|||++||+|+.+.       .|++|++..+..          ...+.+|...|.+++++++ .++++..+
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~-~~~~g~~~   92 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG-IILVGCNE   92 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT-EEEEECCC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC-EEEEEECC
Confidence            45899999999999999998643       599999876532          2245688888988887643 23344433


Q ss_pred             CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE------------eeeceeeEE
Q psy3640         250 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT------------YRGHSAEVT  317 (616)
Q Consensus       250 ~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~------------~~~~~~~v~  317 (616)
                      +..++|+                                ++.|+.+++|++........            .......++
T Consensus        93 ~~~~l~s--------------------------------~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (365)
T 4h5i_A           93 NSTKITQ--------------------------------GKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVY  140 (365)
T ss_dssp             CHHHHHH--------------------------------TSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEE
T ss_pred             CccEEEE--------------------------------ecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEE
Confidence            3333322                                22233333333322211100            011234578


Q ss_pred             EcCCCCEEEEEe--CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640         318 FSPDQSTFCSCS--MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       318 ~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      |+||++++++++  .|++|++||+++++.+..+. |...|.+++|+|+|+++++++.+ .+.+|+..             
T Consensus       141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~-------------  205 (365)
T 4h5i_A          141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTV-------------  205 (365)
T ss_dssp             ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETT-------------
T ss_pred             EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEec-------------
Confidence            999999987655  68999999999999988886 78889999999999999999855 55666654             


Q ss_pred             cccCCcce--EEEecCccceeEEEEccCCCEEEEEeCCC----cEEEEeCCCCeE----EEEeecCCCCEEEEEEcCCCC
Q psy3640         396 YRASHKPI--HILTGHSQEISNCLFNFSNSMIASSSLDG----TAKLWDVRTMCC----FYTLKNHEDEVLDIAFDYSGS  465 (616)
Q Consensus       396 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~  465 (616)
                         .....  .....|...+.+++|+|++..+++++.++    .++.|++.....    ...+..|...|++++|+|+|+
T Consensus       206 ---~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~  282 (365)
T 4h5i_A          206 ---TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE  282 (365)
T ss_dssp             ---TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred             ---cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence               23322  23456888899999999999999999887    588898876643    345667888888888888888


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE-EeeccccCE
Q psy3640         466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ-TFYGHSNEV  544 (616)
Q Consensus       466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~h~~~v  544 (616)
                      +||+|+.|++|++||+.+.                                               +++. .+.+|..+|
T Consensus       283 ~lasgs~D~~V~iwd~~~~-----------------------------------------------~~~~~~~~gH~~~V  315 (365)
T 4h5i_A          283 LAVLASNDNSIALVKLKDL-----------------------------------------------SMSKIFKQAHSFAI  315 (365)
T ss_dssp             EEEEEETTSCEEEEETTTT-----------------------------------------------EEEEEETTSSSSCE
T ss_pred             ceEEEcCCCEEEEEECCCC-----------------------------------------------cEEEEecCcccCCE
Confidence            8888888888888887653                                               3333 357899999


Q ss_pred             EEEEEecCCCEEEEEECCCcEEEecCCcC
Q psy3640         545 SKVSFHPTGKLVLSGSQDTTCRLWSTESG  573 (616)
Q Consensus       545 ~~l~~spdg~~l~s~s~dg~i~iwd~~~~  573 (616)
                      ++++|||||++||+|+.|++|+|||+...
T Consensus       316 ~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          316 TEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999999999999999999999643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.2e-35  Score=293.21  Aligned_cols=285  Identities=12%  Similarity=0.111  Sum_probs=243.4

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc---EEEEEeccCCcEEEEEEcCCCC--EEEEECCCcEEE
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKL  254 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~---~~~~~~~h~~~I~~l~fs~~~~--lls~s~d~~I~i  254 (616)
                      +....+|...|++++|+|++++|++|+.||.|+|||+.+++   ....+.+|...|.+++|+|++.  +++++.||.|++
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             eecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            34567899999999999999999999999999999998887   4556679999999999999998  458999999999


Q ss_pred             EeC-CCCceEEEeeC--CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC---------cceeEEee--eceeeEEEcC
Q psy3640         255 WDI-KSGHEICTYRG--HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK---------EECIQTYR--GHSAEVTFSP  320 (616)
Q Consensus       255 wd~-~~~~~~~~~~~--h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~--~~~~~v~~~~  320 (616)
                      ||+ .+++. ..+.+  |...|.+++|+ + ++.+++++.|+.|++||+.+         ++++..+.  .....++|+|
T Consensus        84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSF-QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSE-EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             EEeccCCce-EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence            999 87765 77888  99999999999 5 99999999999999999987         66555544  3344568888


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-Cc--eeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCccccccccc
Q psy3640         321 DQSTFCSCSMDHTARIFNTNS-GQ--EMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY  396 (616)
Q Consensus       321 ~~~~l~~~~~dg~i~i~d~~~-~~--~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  396 (616)
                      ++  +++++.++.|++||+++ +.  .......|...+.+++|+| +++++++++.||.|++|+++.....         
T Consensus       161 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~---------  229 (342)
T 1yfq_A          161 SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDD---------  229 (342)
T ss_dssp             SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCS---------
T ss_pred             Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcc---------
Confidence            77  99999999999999998 54  3344556888999999999 9999999999999999999732000         


Q ss_pred             ccCCcceEEEecCcc---------ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCE
Q psy3640         397 RASHKPIHILTGHSQ---------EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSK  466 (616)
Q Consensus       397 ~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~  466 (616)
                       ........+..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+..| ..+|.+++  |++++
T Consensus       230 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~  306 (342)
T 1yfq_A          230 -YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNI  306 (342)
T ss_dssp             -TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSE
T ss_pred             -cccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCe
Confidence             01255566666654         9999999999999999999999999999999999999998 99999999  99999


Q ss_pred             EEEEeCCCc-EEEEec
Q psy3640         467 LATASSDQT-ANLWTV  481 (616)
Q Consensus       467 l~~~~~dg~-i~iwd~  481 (616)
                      |++++.||. .+.+..
T Consensus       307 l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          307 LCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEEECTHHHHCSSS
T ss_pred             EEEEecCCcccccccc
Confidence            999999998 555553

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.9e-34  Score=297.71  Aligned_cols=296  Identities=23%  Similarity=0.420  Sum_probs=248.8

Q ss_pred             EEEeeCCCCc-EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE---EEcCCCCEEEEEeCCCcEEEEE
Q psy3640         263 ICTYRGHQNV-VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFN  338 (616)
Q Consensus       263 ~~~~~~h~~~-V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~~~~l~~~~~dg~i~i~d  338 (616)
                      ...+.+|... +.++.+.   ++++++|+.||+|++||+.+++.+..+.+|...+   +|+|++ .+++|+.||.|++||
T Consensus       114 ~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             eEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            3577889877 5677765   6899999999999999999999999998887655   788887 999999999999999


Q ss_pred             CCCCceeEEeecCCcCEEEEEEc--CCCCEEEEEECCCcEEEEecccccCCcccccc-------cccccCCcceEEEecC
Q psy3640         339 TNSGQEMHTLKAHTGPVISLQFS--SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE-------STYRASHKPIHILTGH  409 (616)
Q Consensus       339 ~~~~~~~~~~~~~~~~v~~l~~~--~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~  409 (616)
                      +++++.+..+.+|...|.+++|+  ++++++++|+.||.|++||++...........       ............+.+|
T Consensus       190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (464)
T 3v7d_B          190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  269 (464)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred             CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence            99999999999999999999998  57789999999999999999754322111000       0001122235677788


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeee
Q psy3640         410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ  489 (616)
Q Consensus       410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  489 (616)
                      ...+.++  ++++.++++++.||.|++||+++++++..+.+|...|.+++|+|+++++++++.||.|++||+.++     
T Consensus       270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-----  342 (464)
T 3v7d_B          270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-----  342 (464)
T ss_dssp             SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-----
T ss_pred             cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----
Confidence            8888776  678999999999999999999999999999999999999999999999999999999999998653     


Q ss_pred             EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640         490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS  569 (616)
Q Consensus       490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd  569 (616)
                                                                ..+..+.+|...|.+++|+  +++|++++.||.|++||
T Consensus       343 ------------------------------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd  378 (464)
T 3v7d_B          343 ------------------------------------------ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWD  378 (464)
T ss_dssp             ------------------------------------------EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             ------------------------------------------cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEE
Confidence                                                      4455667899999999997  57999999999999999


Q ss_pred             CCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         570 TESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       570 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      +.+++...... |...+..++|++++++|++++ ||.|++||+.+.
T Consensus       379 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          379 ANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             TTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             CCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            99988776654 566788899999999999998 899999999875

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-37  Score=313.21  Aligned_cols=320  Identities=10%  Similarity=0.092  Sum_probs=251.9

Q ss_pred             cCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee
Q psy3640         228 HQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI  306 (616)
Q Consensus       228 h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  306 (616)
                      -...|.+++|+|||+++ +++.|++|+  |...++.+   .+|...|.+++|+ |+|       .++.+.+|+.+.....
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~Fs-Pdg-------~~~~~~~~~~~~~~~~   80 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEF-PLE-------FENKLDFELAQQNGLL   80 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEE-CCC-------CCCTTTTSCCCSSCSS
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEEC-CCC-------CcceEEEEeCCCceEe
Confidence            45789999999999965 889999999  76666544   7999999999999 666       5666666654433222


Q ss_pred             E-EeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCc-----CEEEEEEcCCCCEEEEEECCCcEEEEe
Q psy3640         307 Q-TYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTG-----PVISLQFSSDRNMLITGSFDSSIVVWD  380 (616)
Q Consensus       307 ~-~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~l~~g~~dg~i~iwd  380 (616)
                      . .-......++|+|+|..+|+++.||.+++||..+  .+..+. |..     .+.+++|+|||++|++|+.||+|++||
T Consensus        81 ~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd  157 (588)
T 2j04_A           81 NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS  157 (588)
T ss_dssp             TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence            1 1134556679999999999999999999999654  666666 665     499999999999999999999999999


Q ss_pred             cccccCCcccccccccccCCcceEEE----ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE---EEEe-ecCC
Q psy3640         381 IQYQFGTRNAYAESTYRASHKPIHIL----TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC---FYTL-KNHE  452 (616)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~-~~~~  452 (616)
                      +.......         .....+..+    .+|...|.+++|+|++  +++++.|+.+++||+..+..   ..++ .+|.
T Consensus       158 ~~~~~l~~---------~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          158 IRKNSENT---------PEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             CCCCTTTC---------CCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             CCCCcccc---------ccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            97310000         000124555    6677899999999999  88899999999999988763   3456 3788


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEE--cCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF--DYSGSKLATASSDQTAKLWTVGGA  530 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~  530 (616)
                      ..|.+++|+  ++.+|+++ +++|++||+.+........ +|..   .+..+++  +|++..+++++.+|. ++|..+  
T Consensus       227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~---~V~~va~~~s~d~~~La~a~edG~-klw~~d--  296 (588)
T 2j04_A          227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLE---NFHIIPLNHEKESTILLMSNKTSY-KVLLED--  296 (588)
T ss_dssp             SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCS---CCCEEEETTCSSCEEEEECSSCEE-EEEESS--
T ss_pred             CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCc---eEEEEEeeeCCCCCEEEEEcCCCC-EEEeec--
Confidence            899999999  68999887 6999999998864432222 4544   4667899  999999999999999 999986  


Q ss_pred             eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeC
Q psy3640         531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASK  603 (616)
Q Consensus       531 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~  603 (616)
                                     .++++||+..+++.  |+++++|+...+. +..+.+ ...|.+++|||||+.+|+++.
T Consensus       297 ---------------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 ---------------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             ---------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred             ---------------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence                           26699999888875  9999999985444 555655 677999999999999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.1e-34  Score=298.01  Aligned_cols=281  Identities=28%  Similarity=0.500  Sum_probs=254.7

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeC
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDI  257 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~  257 (616)
                      +....+.+|..+|++++|+  ++++++|+.||+|++||+.+++.+..+.+|...|.+++|++ ..+++++.|++|++||+
T Consensus       150 ~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          150 KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEES
T ss_pred             cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC-CEEEEEeCCCEEEEEEC
Confidence            4567788999999999997  67999999999999999999999999999999999999963 34779999999999999


Q ss_pred             CCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEE
Q psy3640         258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARI  336 (616)
Q Consensus       258 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i  336 (616)
                      .+++.+..+.+|...|.+++|   +++.+++++.||.|++||+.+++.+..+.+|...+ ++..++..+++++.||.|++
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i  303 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRV  303 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEE
T ss_pred             CCCcEEEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEE
Confidence            999999999999999999999   47899999999999999999999999998877655 44448999999999999999


Q ss_pred             EECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec---Cccce
Q psy3640         337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG---HSQEI  413 (616)
Q Consensus       337 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i  413 (616)
                      ||+.+++.+..+.+|...+.++.++  ++++++|+.||.|++||++                ....+..+..   |...|
T Consensus       304 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~----------------~~~~~~~~~~~~~~~~~v  365 (445)
T 2ovr_B          304 WDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIK----------------TGQCLQTLQGPNKHQSAV  365 (445)
T ss_dssp             EETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETT----------------TCCEEEEECSTTSCSSCE
T ss_pred             EECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECC----------------CCcEEEEEccCCCCCCCE
Confidence            9999999999999999999998884  6799999999999999997                6666777765   78889


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe-----ecCCCCEEEEEEcCCCCEEEEEeCCCc----EEEEecCCc
Q psy3640         414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL-----KNHEDEVLDIAFDYSGSKLATASSDQT----ANLWTVGGA  484 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~l~~~~~~~~l~~~~~dg~----i~iwd~~~~  484 (616)
                      .+++++  ++++++|+.||.|++||+.+++.+..+     ..+.+.|.+++|+|++..+++++.||+    +.+||+...
T Consensus       366 ~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          366 TCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            999985  689999999999999999999998888     467889999999999999999999998    999998753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.7e-35  Score=290.82  Aligned_cols=288  Identities=18%  Similarity=0.312  Sum_probs=224.0

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCC----cEEEEEeccCCcEEEEEEcC--CCC-EEEEECCCcE
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSG----HEICTYRGHQNVVYAVAFSE--PYG-CLTGSYDRTC  252 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~----~~~~~~~~h~~~I~~l~fs~--~~~-lls~s~d~~I  252 (616)
                      .+.+.+|..+|++++|+|+|++||+|+.||.|++||+.++    +....+.+|...|.+++|+|  ++. +++++.|+.|
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            3567899999999999999999999999999999999876    46778889999999999999  466 5599999999


Q ss_pred             EEEeCCCC---------ceEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcceeEEee-----------
Q psy3640         253 KLWDIKSG---------HEICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEECIQTYR-----------  310 (616)
Q Consensus       253 ~iwd~~~~---------~~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------  310 (616)
                      ++||+.++         +.+..+.+|...|.+++|+ ++  ++++++++.||.|++||+.+++.+..+.           
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            99999987         5678888999999999999 77  8999999999999999999887654432           


Q ss_pred             -----eceeeEEEcCC---CCEEEEEeCCCcEEEEECCCCce--eEEeecCCcCEEEEEEcCCC----CEEEEEECCCcE
Q psy3640         311 -----GHSAEVTFSPD---QSTFCSCSMDHTARIFNTNSGQE--MHTLKAHTGPVISLQFSSDR----NMLITGSFDSSI  376 (616)
Q Consensus       311 -----~~~~~v~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~----~~l~~g~~dg~i  376 (616)
                           .....++|+|+   +..+++++.++.+.+|+...++.  +..+.+|...|.+++|+|++    ++|++++.||.|
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i  242 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI  242 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence                 12345689997   99999999999998888887765  67778899999999999998    899999999999


Q ss_pred             EEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE----EeCCCcEEEEeCCCCeEEEEeecCC
Q psy3640         377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS----SSLDGTAKLWDVRTMCCFYTLKNHE  452 (616)
Q Consensus       377 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~~~~  452 (616)
                      ++||++...                .......+..........+.......    +.....+.+|+....+.+..+.+|.
T Consensus       243 ~iwd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  306 (351)
T 3f3f_A          243 RIFKITEKL----------------SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN  306 (351)
T ss_dssp             EEEEEEECC-------------------------------------------------------CCSEEEEEEEEECTTS
T ss_pred             EEEeCCCCc----------------CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence            999997421                11111112222222222233222222    3344556777777788889999999


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGA  484 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  484 (616)
                      ..|++++|+|++++|++++.||.|++|++...
T Consensus       307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence            99999999999999999999999999999865

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.3e-35  Score=293.35  Aligned_cols=248  Identities=23%  Similarity=0.402  Sum_probs=202.8

Q ss_pred             eecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEEEE
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCKLW  255 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~iw  255 (616)
                      ..+.+|.++|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|..+|.+++|+++  +. +++++.|++|++|
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            4567999999999999999999999999999999998875  46788999999999999863  44 6799999999999


Q ss_pred             eCCCCc--eEEEeeCCCCcEEEEEEeCC-CCCEEEEEECCCeEEEEeCCCcce---eEEeeecee---eEEEcCC-----
Q psy3640         256 DIKSGH--EICTYRGHQNVVYAVAFSEP-YGDKILTGSFDKTLKLWASAKEEC---IQTYRGHSA---EVTFSPD-----  321 (616)
Q Consensus       256 d~~~~~--~~~~~~~h~~~V~~l~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~---~v~~~~~-----  321 (616)
                      |+.+++  ....+.+|...|.+++|+|. ++.+|++++.|++|++||+..+..   ...+.+|..   .++|+|+     
T Consensus        87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  166 (316)
T 3bg1_A           87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS  166 (316)
T ss_dssp             CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred             ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence            999874  66778899999999999943 278999999999999999987632   233344443   4578887     


Q ss_pred             ------------CCEEEEEeCCCcEEEEECCCC---ceeEEeecCCcCEEEEEEcCCC----CEEEEEECCCcEEEEecc
Q psy3640         322 ------------QSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISLQFSSDR----NMLITGSFDSSIVVWDIQ  382 (616)
Q Consensus       322 ------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~~~~----~~l~~g~~dg~i~iwd~~  382 (616)
                                  +.+|++|+.|+.|++||++.+   +....+.+|...|.+++|+|++    ++|++++.|++|++|++.
T Consensus       167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence                        468999999999999999765   4667788999999999999986    899999999999999986


Q ss_pred             cccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy3640         383 YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR  440 (616)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  440 (616)
                      ....            .......+..|...|.+++|+|++++|++++.|+.|++|+..
T Consensus       247 ~~~~------------~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          247 DASS------------NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             STTC------------CCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             Cccc------------cchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            3110            011123446688999999999999999999999999999975

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.2e-35  Score=302.19  Aligned_cols=277  Identities=17%  Similarity=0.314  Sum_probs=229.0

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc-----------EEEEEeccC------------CcEEEEEEcCCC
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH-----------EICTYRGHQ------------NVVYAVAFSEPY  241 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~I~~l~fs~~~  241 (616)
                      .|.++|++++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            478999999999999999999999999999999887           577899998            889999999997


Q ss_pred             --C-EEEEECCCcEEEEeCCCCceE---------------------------------------EE-eeCCCCcEEEEEE
Q psy3640         242 --G-CLTGSYDRTCKLWDIKSGHEI---------------------------------------CT-YRGHQNVVYAVAF  278 (616)
Q Consensus       242 --~-lls~s~d~~I~iwd~~~~~~~---------------------------------------~~-~~~h~~~V~~l~~  278 (616)
                        . +++++.|++|++||+.++...                                       .. ..+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              4 679999999999999775432                                       12 3689999999999


Q ss_pred             eCCCCCEEEEEECCCeEEEEeCCC-cceeEE-------eeec---eeeEEEcCCC-CEEEEEeCCCcEEEEECCCCce--
Q psy3640         279 SEPYGDKILTGSFDKTLKLWASAK-EECIQT-------YRGH---SAEVTFSPDQ-STFCSCSMDHTARIFNTNSGQE--  344 (616)
Q Consensus       279 ~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~-------~~~~---~~~v~~~~~~-~~l~~~~~dg~i~i~d~~~~~~--  344 (616)
                      + +++++|++| .|+.|++||+.+ ++....       +.+|   ...++|+|++ ..+++++.||.|++||+++++.  
T Consensus       186 ~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 N-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             C-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             c-CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            9 789999998 899999999994 444442       2334   3456899998 9999999999999999999887  


Q ss_pred             --eEEeecCCc------------CEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640         345 --MHTLKAHTG------------PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS  410 (616)
Q Consensus       345 --~~~~~~~~~------------~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (616)
                        ...+..|..            .|.+++|+|++++|++++. +.|++||++.               ...++..+..|.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~---------------~~~~~~~~~~~~  327 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM---------------ENRPVETYQVHE  327 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC---------------CSSCSCCEESCG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC---------------Cccccceeeccc
Confidence              788888876            8999999999999999998 9999999973               145555666665


Q ss_pred             cc---------------eeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee--------------------------
Q psy3640         411 QE---------------ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK--------------------------  449 (616)
Q Consensus       411 ~~---------------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------------  449 (616)
                      ..               +..++|+|++++|++|+.||.|++||+.+++.+. +.                          
T Consensus       328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccc
Confidence            32               2348999999999999999999999999987653 22                          


Q ss_pred             -------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         450 -------NHEDEVLDIAFDYSGSKLATASSDQTANLWTV  481 (616)
Q Consensus       450 -------~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  481 (616)
                             .+...|..++|+|++++||+++.++ +.+|..
T Consensus       407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             cccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence                   2235688999999999999998775 777764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2e-34  Score=298.48  Aligned_cols=277  Identities=29%  Similarity=0.516  Sum_probs=240.1

Q ss_pred             eeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy3640         266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTNSGQE  344 (616)
Q Consensus       266 ~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~~~~~  344 (616)
                      ..+|...|.++++   +++++++|+.||.|++||+.+++....+.+|...+ ++..+++.+++|+.||.|++||+.+++.
T Consensus       129 ~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~  205 (435)
T 1p22_A          129 RSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM  205 (435)
T ss_dssp             CCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE
T ss_pred             ccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE
Confidence            3457778999886   58999999999999999999999999999888766 5666999999999999999999999999


Q ss_pred             eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640         345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM  424 (616)
Q Consensus       345 ~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  424 (616)
                      +..+..|...|.+++|++  +.+++|+.||.|++||+....             .......+.+|...|.++.+  ++++
T Consensus       206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~--~~~~  268 (435)
T 1p22_A          206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAAVNVVDF--DDKY  268 (435)
T ss_dssp             EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSS-------------CCEEEEEECCCSSCEEEEEE--ETTE
T ss_pred             EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCC-------------CceeeeEecCCCCcEEEEEe--CCCE
Confidence            999999999999999964  599999999999999997321             11223677889999999988  7889


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEE
Q psy3640         425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI  504 (616)
Q Consensus       425 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~  504 (616)
                      +++|+.||.|++||+++++.+..+..|...|.+++++  +.++++++.||.|++||+.++                    
T Consensus       269 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~--------------------  326 (435)
T 1p22_A          269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG--------------------  326 (435)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--------------------
T ss_pred             EEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC--------------------
Confidence            9999999999999999999999999999999999884  678888888888888888653                    


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe---------e
Q psy3640         505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE---------C  575 (616)
Q Consensus       505 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~---------~  575 (616)
                                                 ..+..+.+|...|++++|  ++++|++|+.||.|++||+.+++         +
T Consensus       327 ---------------------------~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~  377 (435)
T 1p22_A          327 ---------------------------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC  377 (435)
T ss_dssp             ---------------------------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTE
T ss_pred             ---------------------------CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchh
Confidence                                       344556779999999998  78899999999999999998776         8


Q ss_pred             eeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       576 ~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      +..+.+|.++|.+++|  ++++|++++.||+|++||+.+.
T Consensus       378 ~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          378 LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             EEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             eeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            8899999999999999  7889999999999999999764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=290.79  Aligned_cols=255  Identities=22%  Similarity=0.347  Sum_probs=215.5

Q ss_pred             hheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECC--CCcEEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEE
Q psy3640         179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIK--SGHEICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCK  253 (616)
Q Consensus       179 ~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~  253 (616)
                      ....+.+|..+|++++|+|+|++||+|+.||.|+|||+.  +++.+..+.+|...|++++|+++  +. +++++.|+.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            457889999999999999999999999999999999998  66777889999999999999977  66 55999999999


Q ss_pred             EEeCCCCc--eEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEe
Q psy3640         254 LWDIKSGH--EICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCS  329 (616)
Q Consensus       254 iwd~~~~~--~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~  329 (616)
                      +||+.+++  .+..+..|...|.+++|+ |+  +.++++++.|+.|++||+.++...                       
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~~~-----------------------  138 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTT-----------------------  138 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTSCC-----------------------
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCCce-----------------------
Confidence            99999997  778888899999999999 66  788888888888888887654321                       


Q ss_pred             CCCcEEEEECCCCceeEEeecCCcCEEEEEEcC-------------CCCEEEEEECCCcEEEEecccccCCccccccccc
Q psy3640         330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS-------------DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY  396 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~-------------~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~  396 (616)
                                    ....+..|...|.+++|+|             ++.++++++.||.|++||++....          
T Consensus       139 --------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------  194 (379)
T 3jrp_A          139 --------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ----------  194 (379)
T ss_dssp             --------------CEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT----------
T ss_pred             --------------eeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc----------
Confidence                          1223456888999999999             699999999999999999973210          


Q ss_pred             ccCCcceEEEecCccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCe-----EEEEeecCCCCEEEEEEcCCCCEEE
Q psy3640         397 RASHKPIHILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMC-----CFYTLKNHEDEVLDIAFDYSGSKLA  468 (616)
Q Consensus       397 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~l~  468 (616)
                        .......+.+|...|.+++|+|+   +.++++++.||.|++||++++.     .......|...|.+++|+|++++|+
T Consensus       195 --~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~  272 (379)
T 3jrp_A          195 --TYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA  272 (379)
T ss_dssp             --EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred             --ceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEE
Confidence              12345677889999999999999   8999999999999999998863     2222234788999999999999999


Q ss_pred             EEeCCCcEEEEecCC
Q psy3640         469 TASSDQTANLWTVGG  483 (616)
Q Consensus       469 ~~~~dg~i~iwd~~~  483 (616)
                      +++.||.|++|++..
T Consensus       273 ~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          273 LSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEESSSSEEEEEEEE
T ss_pred             EecCCCcEEEEeCCC
Confidence            999999999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.5e-35  Score=289.42  Aligned_cols=250  Identities=20%  Similarity=0.289  Sum_probs=207.2

Q ss_pred             EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc--CCCE
Q psy3640         347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF--SNSM  424 (616)
Q Consensus       347 ~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~  424 (616)
                      .+.+|...|.+++|+|+|++|++|+.|++|++||+...              ....+..+.+|...|.+++|++  ++++
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~--------------~~~~~~~l~gH~~~V~~v~~~~~~~~~~   73 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG--------------GQILIADLRGHEGPVWQVAWAHPMYGNI   73 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT--------------EEEEEEEEECCSSCEEEEEECCGGGSSC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC--------------CcEEEEEEcCCCccEEEEEeCCCCCCCE
Confidence            34679999999999999999999999999999998621              1124567889999999999975  4899


Q ss_pred             EEEEeCCCcEEEEeCCCC--eEEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCcee--eeeEEeccCCCe
Q psy3640         425 IASSSLDGTAKLWDVRTM--CCFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVE--LLQTFYGHSNEV  498 (616)
Q Consensus       425 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~  498 (616)
                      |++++.|++|++||++++  .....+.+|...|.+++|+|+  +.+|++++.|+.|++|++.....  ....+..|.   
T Consensus        74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~---  150 (316)
T 3bg1_A           74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT---  150 (316)
T ss_dssp             EEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS---
T ss_pred             EEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc---
Confidence            999999999999999987  466778889999999999998  78999999999999999976422  122233333   


Q ss_pred             eeEEEEEEcCC-----------------CCEEEEEeCCCcEEEEecCCc--eEEeEEeeccccCEEEEEEecCC----CE
Q psy3640         499 SKVLDIAFDYS-----------------GSKLATASSDQTAKLWTVGGA--VELLQTFYGHSNEVSKVSFHPTG----KL  555 (616)
Q Consensus       499 ~~i~~~~~s~~-----------------~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~h~~~v~~l~~spdg----~~  555 (616)
                      ..+.+++|+|+                 +.+|++|+.|+.|++||+...  ......+.+|...|.+++|+|++    ++
T Consensus       151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~  230 (316)
T 3bg1_A          151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST  230 (316)
T ss_dssp             SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred             CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence            34667889887                 478999999999999999753  25667788999999999999986    89


Q ss_pred             EEEEECCCcEEEecCCcC---e-eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         556 VLSGSQDTTCRLWSTESG---E-CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       556 l~s~s~dg~i~iwd~~~~---~-~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      |++|+.||+|++|++.+.   + ....+..|.+.|.+++|+|++++||+++.||+|++|+..
T Consensus       231 las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          231 IASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999999999998763   1 234567789999999999999999999999999999975

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.9e-34  Score=286.21  Aligned_cols=295  Identities=13%  Similarity=0.085  Sum_probs=234.3

Q ss_pred             EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc---eeEEeeece---eeEEEcCCCC-EEEEEeCCCcEEEE
Q psy3640         265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE---CIQTYRGHS---AEVTFSPDQS-TFCSCSMDHTARIF  337 (616)
Q Consensus       265 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~---~~v~~~~~~~-~l~~~~~dg~i~i~  337 (616)
                      ...+|.+.|++++|+ |++++|++++.|+.|++|++.+++   ......+|.   ..++|+|++. ++++++.||.|++|
T Consensus         6 ~~~~h~~~v~~~~~s-~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            6 IEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEEc-CCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            345799999999999 789999999999999999998877   233344444   4568999999 99999999999999


Q ss_pred             EC-CCCceeEEeec--CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         338 NT-NSGQEMHTLKA--HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       338 d~-~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                      |+ .+++. ..+..  |...|.+++|+| ++.+++++.|+.|++||++........       ....++..+. |...+.
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~-~~~~v~  154 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA-------VKNLNSNNTK-VKNKIF  154 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE-------EEESCSSSSS-SCCCEE
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc-------ccCCeeeEEe-eCCceE
Confidence            99 77654 77788  999999999999 999999999999999998731000000       0022222333 778899


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCC-Ce--EEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCc-----e
Q psy3640         415 NCLFNFSNSMIASSSLDGTAKLWDVRT-MC--CFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGA-----V  485 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~-----~  485 (616)
                      +++|++++  +++++.++.|++||+++ +.  .......+...+.+++|+| +++++++++.||.+++|++...     .
T Consensus       155 ~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          155 TMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS  232 (342)
T ss_dssp             EEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred             EEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence            99999887  99999999999999988 43  3334456788999999999 9999999999999999998764     1


Q ss_pred             eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcE
Q psy3640         486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTC  565 (616)
Q Consensus       486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i  565 (616)
                      .....+..+....                                     .-.+|...|++++|+|++++|++++.||.|
T Consensus       233 ~~~~~~~~~~~~~-------------------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  275 (342)
T 1yfq_A          233 SKRFAFRCHRLNL-------------------------------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGII  275 (342)
T ss_dssp             TTCEEEECCCCCT-------------------------------------TCCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred             ccceeeecccccc-------------------------------------cccccceeEEEEEEcCCCCEEEEecCCceE
Confidence            2222121111100                                     001356699999999999999999999999


Q ss_pred             EEecCCcCeeeeEeccC-cccEEEEEEeeCCCEEEEeeCCCc-EEEcc
Q psy3640         566 RLWSTESGECIQVLKAH-EDDVFSCGFNYNGDTIITASKDNT-CCIWR  611 (616)
Q Consensus       566 ~iwd~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~t~s~Dg~-i~vW~  611 (616)
                      ++||+.+++.+..+.+| .++|.+++  |++++|++++.||+ .+.|.
T Consensus       276 ~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          276 SCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             EEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence            99999999999999998 99999999  99999999999999 43333

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.7e-34  Score=286.81  Aligned_cols=297  Identities=18%  Similarity=0.260  Sum_probs=243.4

Q ss_pred             EeCCCcceeEEeeecee---eEEEcCC---CCEEEEEeCCCcEEEEECCC-Ccee-EEeecCCcCEEEEEEcCCCCEEEE
Q psy3640         298 WASAKEECIQTYRGHSA---EVTFSPD---QSTFCSCSMDHTARIFNTNS-GQEM-HTLKAHTGPVISLQFSSDRNMLIT  369 (616)
Q Consensus       298 wd~~~~~~~~~~~~~~~---~v~~~~~---~~~l~~~~~dg~i~i~d~~~-~~~~-~~~~~~~~~v~~l~~~~~~~~l~~  369 (616)
                      |+....+.+..+.+|..   .++|+|+   +++|++++.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            44555566666666654   4589999   59999999999999999997 5554 778899999999999999999999


Q ss_pred             EECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEE--ccCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q psy3640         370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF--NFSNSMIASSSLDGTAKLWDVRTMCCFYT  447 (616)
Q Consensus       370 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  447 (616)
                      ++.||.|++||+.                ... ......|...|.+++|  ++++.++++++.||.|++||+++++.+..
T Consensus       104 ~~~dg~v~iwd~~----------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          104 ASCDKTAKMWDLS----------------SNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             EETTSEEEEEETT----------------TTE-EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             EcCCCcEEEEEcC----------------CCC-ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            9999999999996                333 3346779999999999  89999999999999999999999998888


Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCC--CEEEEEeCCCcEEEE
Q psy3640         448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSG--SKLATASSDQTAKLW  525 (616)
Q Consensus       448 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~vw  525 (616)
                      +..+. .+.++.+.  ...+++++.++.+.+|++......................+...+..  ..+++++.||.|++|
T Consensus       167 ~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~  243 (368)
T 3mmy_A          167 LQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIH  243 (368)
T ss_dssp             EECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEE
T ss_pred             EecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEE
Confidence            88654 56666666  45889999999999999988655554444433333333333333332  229999999999999


Q ss_pred             ecCCce--EEeEEeecccc------------CEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640         526 TVGGAV--ELLQTFYGHSN------------EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF  591 (616)
Q Consensus       526 d~~~~~--~~~~~~~~h~~------------~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~  591 (616)
                      ++....  .....+.+|..            +|++++|+|++++|++|+.||.|++||+.+++++..+.+|..+|.+++|
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  323 (368)
T 3mmy_A          244 YINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCF  323 (368)
T ss_dssp             ESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEE
T ss_pred             ecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEE
Confidence            997642  34556666765            7999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCEEEEeeCCCcEEEcccCC
Q psy3640         592 NYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       592 s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      +|++++|++++.|+..+.|++.+
T Consensus       324 s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          324 NHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             CTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CCCCCeEEEEecccccccccccC
Confidence            99999999999998777776543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.8e-34  Score=296.76  Aligned_cols=312  Identities=17%  Similarity=0.283  Sum_probs=229.5

Q ss_pred             CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy3640         269 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL  348 (616)
Q Consensus       269 h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  348 (616)
                      |.+.|++++|+ |++++|++|+.||.|++||+.+++.....                    ..+        ..+....+
T Consensus        27 ~~~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~--------------------~~~--------~~~~~~~~   77 (447)
T 3dw8_B           27 EADIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSH--------------------SRG--------EYNVYSTF   77 (447)
T ss_dssp             GGGSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CC--------------------CCC--------CEEEEEEE
T ss_pred             ccCcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcc--------------------ccc--------ceeEeccc
Confidence            56788888888 67888888888888888887765421100                    000        01234556


Q ss_pred             ecCC------------cCEEEEEEcCCC--CEEEEEECCCcEEEEecccccCCcccccccc-------------------
Q psy3640         349 KAHT------------GPVISLQFSSDR--NMLITGSFDSSIVVWDIQYQFGTRNAYAEST-------------------  395 (616)
Q Consensus       349 ~~~~------------~~v~~l~~~~~~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~-------------------  395 (616)
                      .+|.            ..|.+++|+|++  ..|++++.|+.|++||+..............                   
T Consensus        78 ~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  157 (447)
T 3dw8_B           78 QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVF  157 (447)
T ss_dssp             ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEE
T ss_pred             ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccc
Confidence            6676            889999999998  7999999999999999874321100000000                   


Q ss_pred             ----cccCCcceEE-EecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEE-------EeecCCCCEEEEEEcC
Q psy3640         396 ----YRASHKPIHI-LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFY-------TLKNHEDEVLDIAFDY  462 (616)
Q Consensus       396 ----~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~-------~~~~~~~~v~~l~~~~  462 (616)
                          ......+... ..+|...|.+++|+|+++++++| .|+.|++||+++ +....       .+..|...|.+++|+|
T Consensus       158 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p  236 (447)
T 3dw8_B          158 RPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP  236 (447)
T ss_dssp             EEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS
T ss_pred             cchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC
Confidence                0000011112 36799999999999999999999 799999999994 44444       2557899999999999


Q ss_pred             CC-CEEEEEeCCCcEEEEecCCceee---eeEEeccCCC---------eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         463 SG-SKLATASSDQTANLWTVGGAVEL---LQTFYGHSNE---------VSKVLDIAFDYSGSKLATASSDQTAKLWTVGG  529 (616)
Q Consensus       463 ~~-~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~---------~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  529 (616)
                      ++ .+|++++.||.|++||+......   ...+..+...         ...+.+++|+|++++|++++. +.|++||+..
T Consensus       237 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          237 NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred             CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence            98 99999999999999999876431   3444444321         026889999999999999999 9999999987


Q ss_pred             ceEEeEEeeccccC---------------EEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc-------------
Q psy3640         530 AVELLQTFYGHSNE---------------VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA-------------  581 (616)
Q Consensus       530 ~~~~~~~~~~h~~~---------------v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------------  581 (616)
                      ....+..+.+|...               +..++|+|++++|++|+.||.|++||+.+++.+. +.+             
T Consensus       316 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~  394 (447)
T 3dw8_B          316 ENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKP  394 (447)
T ss_dssp             CSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCC
T ss_pred             CccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCC
Confidence            44666777777542               3349999999999999999999999999988763 222             


Q ss_pred             --------------------CcccEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         582 --------------------HEDDVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       582 --------------------h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                                          +...|.+++|+|++++||+++.++ +++|..+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             ccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                                235688999999999999998886 7777654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.6e-33  Score=280.40  Aligned_cols=307  Identities=20%  Similarity=0.224  Sum_probs=223.9

Q ss_pred             EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc----ceeEEeeecee---eEEEcC--CCCEEEEEeCCCcE
Q psy3640         264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE----ECIQTYRGHSA---EVTFSP--DQSTFCSCSMDHTA  334 (616)
Q Consensus       264 ~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~~~~---~v~~~~--~~~~l~~~~~dg~i  334 (616)
                      ..+.+|.+.|++++|+ +++++|++++.||.|++||+.++    +....+.+|..   .++|+|  ++.+|++++.||.|
T Consensus         5 ~~~~gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v   83 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV   83 (351)
T ss_dssp             CEECCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             ccCcccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence            4567899999999999 78999999999999999999876    35566666654   458999  69999999999999


Q ss_pred             EEEECCCC---------ceeEEeecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640         335 RIFNTNSG---------QEMHTLKAHTGPVISLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI  403 (616)
Q Consensus       335 ~i~d~~~~---------~~~~~~~~~~~~v~~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  403 (616)
                      ++||+.++         +.+..+..|...|.+++|+|+  ++++++++.||.|++||++..............   ....
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~  160 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEM---KVLS  160 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEE---ESCS
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccc---cccc
Confidence            99999887         557888899999999999999  999999999999999999754322111100000   0000


Q ss_pred             EEEecCccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCeE--EEEeecCCCCEEEEEEcCCC----CEEEEEeCCC
Q psy3640         404 HILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMCC--FYTLKNHEDEVLDIAFDYSG----SKLATASSDQ  474 (616)
Q Consensus       404 ~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~----~~l~~~~~dg  474 (616)
                      .....+...+.+++|+|+   +..+++++.++.+.+|+...+..  +..+.+|...|.+++|+|++    ++|++++.||
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg  240 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG  240 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence            111257788999999997   99999999999999888887765  67778899999999999998    8999999999


Q ss_pred             cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe----CCCcEEEEecCCceEEeEEeeccccCEEEEEEe
Q psy3640         475 TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS----SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFH  550 (616)
Q Consensus       475 ~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s  550 (616)
                      .|++||+...........    ..........++....++.+.    ....+.+|+... ...+..+.+|...|++++|+
T Consensus       241 ~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s  315 (351)
T 3f3f_A          241 RIRIFKITEKLSPLASEE----SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWSVSWN  315 (351)
T ss_dssp             CEEEEEEEECC-------------------------------------------CCSEE-EEEEEEECTTSSCEEEEEEC
T ss_pred             eEEEEeCCCCcCccccCC----cccceeccCCCcccccccccccccccceeeeeccccc-ccEEEEEecccccEEEEEEc
Confidence            999999976433222111    111122233333444443333    334445555444 46777888999999999999


Q ss_pred             cCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640         551 PTGKLVLSGSQDTTCRLWSTESGECIQVL  579 (616)
Q Consensus       551 pdg~~l~s~s~dg~i~iwd~~~~~~~~~~  579 (616)
                      |++++|++|+.||.|++|++.+++.+..+
T Consensus       316 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          316 LTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             SSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             CCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            99999999999999999999988655433

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.9e-33  Score=282.20  Aligned_cols=255  Identities=22%  Similarity=0.330  Sum_probs=218.7

Q ss_pred             ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-
Q psy3640         343 QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS-  421 (616)
Q Consensus       343 ~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  421 (616)
                      +.+..+.+|...|.+++|+|++++|++|+.||.|++||+...              .......+.+|...|.+++|+++ 
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~--------------~~~~~~~~~~h~~~v~~~~~~~~~   67 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPK   67 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT--------------EEEEEEEECCCSSCEEEEEECCGG
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC--------------cceeeeEecCCCCcEEEEEeCCCC
Confidence            456677899999999999999999999999999999998621              34556678899999999999977 


Q ss_pred             -CCEEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCceee-eeEEeccC
Q psy3640         422 -NSMIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVEL-LQTFYGHS  495 (616)
Q Consensus       422 -~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~  495 (616)
                       +.+|++++.||.|++||+.+++  ....+..|...|.+++|+|+  +.++++++.|+.|++||+...... ...+..+.
T Consensus        68 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~  147 (379)
T 3jrp_A           68 FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA  147 (379)
T ss_dssp             GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred             CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence             9999999999999999999987  77788889999999999999  999999999999999999876332 22333443


Q ss_pred             CCeeeEEEEEEcC-------------CCCEEEEEeCCCcEEEEecCCc---eEEeEEeeccccCEEEEEEecC---CCEE
Q psy3640         496 NEVSKVLDIAFDY-------------SGSKLATASSDQTAKLWTVGGA---VELLQTFYGHSNEVSKVSFHPT---GKLV  556 (616)
Q Consensus       496 ~~~~~i~~~~~s~-------------~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~l~~spd---g~~l  556 (616)
                         ..+.+++|+|             ++.++++++.||.|++||+...   ......+.+|...|++++|+|+   +++|
T Consensus       148 ---~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l  224 (379)
T 3jrp_A          148 ---IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL  224 (379)
T ss_dssp             ---TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred             ---CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence               3478899999             6999999999999999998654   2456678889999999999999   8999


Q ss_pred             EEEECCCcEEEecCCcCe-----eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         557 LSGSQDTTCRLWSTESGE-----CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       557 ~s~s~dg~i~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      ++++.||.|++||+.++.     .+.....|...|.+++|+|++++|++++.||.|++|++..
T Consensus       225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             EEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            999999999999999874     2223344889999999999999999999999999999863

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.5e-33  Score=288.85  Aligned_cols=288  Identities=18%  Similarity=0.297  Sum_probs=233.7

Q ss_pred             eEEEcCCCCEEE-EEeCCCcEEEEECCCC----ceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCc
Q psy3640         315 EVTFSPDQSTFC-SCSMDHTARIFNTNSG----QEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTR  388 (616)
Q Consensus       315 ~v~~~~~~~~l~-~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~  388 (616)
                      .++++|+...++ +++.+|.|++|++...    .....+.+|.+.|.+++|+| ++++|++|+.||.|++||+.......
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~  118 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL  118 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence            356777665444 4678899999998654    23455778999999999999 89999999999999999997321110


Q ss_pred             ccccccccccCCcceEEEecCccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEe--ecCCCCEEEEEEcCCCC
Q psy3640         389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTL--KNHEDEVLDIAFDYSGS  465 (616)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~~~~~~  465 (616)
                               ....++..+.+|...|.+++|+|++ .++++++.||.|++||+++++.+..+  ..|...|.+++|+|+++
T Consensus       119 ---------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  189 (402)
T 2aq5_A          119 ---------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA  189 (402)
T ss_dssp             ---------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred             ---------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence                     0115677889999999999999998 69999999999999999999999999  78999999999999999


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEE---eCCCcEEEEecCCceEEeEEe-eccc
Q psy3640         466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA---SSDQTAKLWTVGGAVELLQTF-YGHS  541 (616)
Q Consensus       466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~-~~h~  541 (616)
                      +|++++.||.|++||+............+...  .+..++|+|++.++++|   +.|+.|++||+.+........ ..|.
T Consensus       190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  267 (402)
T 2aq5_A          190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT--RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS  267 (402)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCSS--SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred             EEEEEecCCcEEEEeCCCCceeeeeccCCCCC--cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCC
Confidence            99999999999999998875443332444432  35678999999999999   799999999998754433332 3577


Q ss_pred             cCEEEEEEecCCCEEEE-EECCCcEEEecCCcCee-eeEecc--CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         542 NEVSKVSFHPTGKLVLS-GSQDTTCRLWSTESGEC-IQVLKA--HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       542 ~~v~~l~~spdg~~l~s-~s~dg~i~iwd~~~~~~-~~~~~~--h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      ..+.+++|+|++++|++ |+.||.|++||+.+++. +..+..  |..+|.+++|+|++.++++  .|+.+++|++.+.
T Consensus       268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            88999999999999975 45799999999999884 555544  4588999999999988764  5679999998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.8e-32  Score=275.27  Aligned_cols=278  Identities=13%  Similarity=0.135  Sum_probs=222.3

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE--EEECCCcEEEEeC
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDI  257 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~  257 (616)
                      +..+.+|..+|++++|+|||++||+|+.+| ++|||+.+++.......  ..+..+++.+++.++  +++.|++|++||+
T Consensus        12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           12 IVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             -------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             ccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            345688999999999999999999998775 78999988776655443  357788888887744  6778899999999


Q ss_pred             CCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc-ceeEEeeeceeeEEEcCCCCEEEE--EeCCCcE
Q psy3640         258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE-ECIQTYRGHSAEVTFSPDQSTFCS--CSMDHTA  334 (616)
Q Consensus       258 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~l~~--~~~dg~i  334 (616)
                      .+++.+..+. |...|.+++|+ +  +.++++ .|+.|++||+.++ +.+..+......+++++  ..+++  |+.+|.|
T Consensus        89 ~~~~~~~~~~-~~~~v~~v~~~-~--~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v  161 (355)
T 3vu4_A           89 VKKQDVSRIK-VDAPVKDLFLS-R--EFIVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQI  161 (355)
T ss_dssp             TTTEEEEEEE-CSSCEEEEEEC-S--SEEEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCE
T ss_pred             CCCcEEEEEE-CCCceEEEEEc-C--CEEEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEE
Confidence            9999999887 67799999998 3  445554 4789999999998 77776666444557777  66666  5789999


Q ss_pred             EEEECCCCc----------------eeEEeecCCcCEEEEEEcCCCCEEEEEECCCc-EEEEecccccCCcccccccccc
Q psy3640         335 RIFNTNSGQ----------------EMHTLKAHTGPVISLQFSSDRNMLITGSFDSS-IVVWDIQYQFGTRNAYAESTYR  397 (616)
Q Consensus       335 ~i~d~~~~~----------------~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~  397 (616)
                      ++||+.+++                .+..+.+|..+|.+++|+|++++|++|+.|++ |++||++               
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~---------------  226 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE---------------  226 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT---------------
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC---------------
Confidence            999999865                26788999999999999999999999999998 9999998               


Q ss_pred             cCCcceEEEe-c-CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE--EEe--------------------e-cCC
Q psy3640         398 ASHKPIHILT-G-HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF--YTL--------------------K-NHE  452 (616)
Q Consensus       398 ~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~--------------------~-~~~  452 (616)
                       ....+..+. + |...|.+++|+|++++|++++.|+.|++||++.+...  ..+                    . ...
T Consensus       227 -~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          227 -DGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             -TCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             -CCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence             677778887 5 9999999999999999999999999999999764211  111                    0 112


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGG  483 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  483 (616)
                      .....++|+++++.+++++.||.+++|++..
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            2346789999999999999999999999854

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.3e-32  Score=281.81  Aligned_cols=279  Identities=16%  Similarity=0.280  Sum_probs=233.3

Q ss_pred             cceEEEEECCCCCEEE-EEECCCcEEEEECCCCc----EEEEEeccCCcEEEEEEcC-CCCE-EEEECCCcEEEEeCCCC
Q psy3640         188 LPLTNITFDKFGTRCL-TGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSE-PYGC-LTGSYDRTCKLWDIKSG  260 (616)
Q Consensus       188 ~~i~~v~~s~~g~~la-sgs~dg~i~iwd~~~~~----~~~~~~~h~~~I~~l~fs~-~~~l-ls~s~d~~I~iwd~~~~  260 (616)
                      .....++++|+...++ +++.||.|+||++.+..    ....+.+|.+.|++++|+| ++.+ ++++.||+|++||+.++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence            3455789999876544 57889999999996652    3456789999999999999 7774 58999999999999988


Q ss_pred             -------ceEEEeeCCCCcEEEEEEeCCCC-CEEEEEECCCeEEEEeCCCcceeEEe--eece---eeEEEcCCCCEEEE
Q psy3640         261 -------HEICTYRGHQNVVYAVAFSEPYG-DKILTGSFDKTLKLWASAKEECIQTY--RGHS---AEVTFSPDQSTFCS  327 (616)
Q Consensus       261 -------~~~~~~~~h~~~V~~l~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~---~~v~~~~~~~~l~~  327 (616)
                             +.+..+.+|...|.+++|+ |++ +.+++++.|+.|++||+.+++.+..+  .+|.   ..++|+|++.++++
T Consensus       115 ~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  193 (402)
T 2aq5_A          115 GLVLPLREPVITLEGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT  193 (402)
T ss_dssp             CCSSCBCSCSEEEECCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred             CCccccCCceEEecCCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence                   6788999999999999999 555 79999999999999999999999888  5555   44689999999999


Q ss_pred             EeCCCcEEEEECCCCceeEEe-ecCCcC-EEEEEEcCCCCEEEEE---ECCCcEEEEecccccCCcccccccccccCCcc
Q psy3640         328 CSMDHTARIFNTNSGQEMHTL-KAHTGP-VISLQFSSDRNMLITG---SFDSSIVVWDIQYQFGTRNAYAESTYRASHKP  402 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~-~~~~~~-v~~l~~~~~~~~l~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  402 (616)
                      ++.||.|++||+++++.+..+ ..|.+. +.+++|+|++.++++|   +.|+.|++||++..               ..+
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~---------------~~~  258 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL---------------EEP  258 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBC---------------SSC
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccc---------------cCC
Confidence            999999999999999999988 678776 8999999999999999   78999999999732               122


Q ss_pred             eEE-EecCccceeEEEEccCCCEEEE-EeCCCcEEEEeCCCCeE-EEEeec--CCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640         403 IHI-LTGHSQEISNCLFNFSNSMIAS-SSLDGTAKLWDVRTMCC-FYTLKN--HEDEVLDIAFDYSGSKLATASSDQTAN  477 (616)
Q Consensus       403 ~~~-~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~~~~~~~l~~~~~dg~i~  477 (616)
                      ... ...+...+..++|+|+++.+++ |+.||.|++||+.+++. +..+..  +...|.+++|+|++.++++  .++.++
T Consensus       259 ~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~  336 (402)
T 2aq5_A          259 LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIAR  336 (402)
T ss_dssp             SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEE
T ss_pred             ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEE
Confidence            222 2356778999999999999875 55799999999998873 444443  5689999999999988764  566999


Q ss_pred             EEecCCc
Q psy3640         478 LWTVGGA  484 (616)
Q Consensus       478 iwd~~~~  484 (616)
                      +|++...
T Consensus       337 ~~~l~~~  343 (402)
T 2aq5_A          337 FYKLHER  343 (402)
T ss_dssp             EEEEETT
T ss_pred             EEEcCCC
Confidence            9999765

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.5e-31  Score=304.62  Aligned_cols=408  Identities=10%  Similarity=0.082  Sum_probs=305.0

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECC------CcEEEEECCCCcEEEEEeccCCcE-------EEEEEcCCCCEE-E
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYD------RTCKLWDIKSGHEICTYRGHQNVV-------YAVAFSEPYGCL-T  245 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~d------g~i~iwd~~~~~~~~~~~~h~~~I-------~~l~fs~~~~ll-s  245 (616)
                      .+.+.+|...+.+++|||||++||+++.+      ..|.+||+.+++ ...+..|...+       ..++|+||++++ +
T Consensus        45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~  123 (1045)
T 1k32_A           45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS  123 (1045)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence            35677899999999999999999988653      379999998876 56788899888       999999999955 4


Q ss_pred             EECC------CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEEC------------CCeEEEEeCCCcceeE
Q psy3640         246 GSYD------RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF------------DKTLKLWASAKEECIQ  307 (616)
Q Consensus       246 ~s~d------~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~------------dg~i~iwd~~~~~~~~  307 (616)
                      ++.+      ..|.+|++.+++...... +.  ...++|+ | + .+++++.            +...++|....+....
T Consensus       124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~--~~~~~~s-p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~  197 (1045)
T 1k32_A          124 TDAMQPFSSMTCLYRVENDGINFVPLNL-GP--ATHILFA-D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFK  197 (1045)
T ss_dssp             ECTTSSSTTCCEEEEEEGGGTEEEECCS-CS--CSEEEEE-T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEE
T ss_pred             ECCcCCCcccceEEEEECCCCCeEEecC-CC--cceeeeC-C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeE
Confidence            4433      358888888877543333 32  3467799 5 6 8888763            3345666543333334


Q ss_pred             Eeeece---eeEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEeccc
Q psy3640         308 TYRGHS---AEVTFSPDQSTFCSCSMDHTARIFNTNS-GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY  383 (616)
Q Consensus       308 ~~~~~~---~~v~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~  383 (616)
                      .+.+|.   ..+.|+++ ..+++++.++.+.+|.+.. +.....+..|. .+...+|+|+|+.++++. ++.|++||+..
T Consensus       198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~  274 (1045)
T 1k32_A          198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDT  274 (1045)
T ss_dssp             EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTT
T ss_pred             ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCc
Confidence            444443   44578888 6667778889899997653 44455565554 456779999999998885 89999999831


Q ss_pred             ccCCcccccccccccCCcceEEEecCccceeEEEEc-cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC-CEEEEEEc
Q psy3640         384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFN-FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED-EVLDIAFD  461 (616)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~  461 (616)
                      .. .. ....    ...........|...+..++|+ |+++.+++++ ++.+.+|++.++... .+..+.. .+..++|+
T Consensus       275 ~~-l~-~l~~----~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s  346 (1045)
T 1k32_A          275 EK-IE-KIEI----GDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD  346 (1045)
T ss_dssp             CC-EE-ECCC----CCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS
T ss_pred             eE-ee-eecc----CcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc
Confidence            10 00 0000    0000000112245578999999 9999999888 789999999887654 3556666 89999999


Q ss_pred             CCCCEEEEEeCCCcEE-EEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc
Q psy3640         462 YSGSKLATASSDQTAN-LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH  540 (616)
Q Consensus       462 ~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h  540 (616)
                       +|+.++.++.++.+. +|++.+....  .+..+   ...+..++|+|+|++|++++.++.+++||+.++ +......+|
T Consensus       347 -dg~~l~~~s~~~~l~~~~d~~~~~~~--~l~~~---~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-~~~~~~~~~  419 (1045)
T 1k32_A          347 -TKVAFIHGTREGDFLGIYDYRTGKAE--KFEEN---LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-KPTVIERSR  419 (1045)
T ss_dssp             -SEEEEEEEETTEEEEEEEETTTCCEE--ECCCC---CCSEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECS
T ss_pred             -CCCeEEEEECCCceEEEEECCCCCce--EecCC---ccceeeeEECCCCCEEEEECCCCeEEEEECCCC-ceEEeccCC
Confidence             999999999888888 8898765321  22222   245778999999999999999999999999875 455556689


Q ss_pred             ccCEEEEEEecCCCEEEEEECCC----------cEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEc
Q psy3640         541 SNEVSKVSFHPTGKLVLSGSQDT----------TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW  610 (616)
Q Consensus       541 ~~~v~~l~~spdg~~l~s~s~dg----------~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW  610 (616)
                      ...+..++|||||++|++++.++          .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|
T Consensus       420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence            99999999999999999887654          89999999888 67788888889999999999999999998888888


Q ss_pred             ccC
Q psy3640         611 RSM  613 (616)
Q Consensus       611 ~~~  613 (616)
                      +..
T Consensus       499 ~~~  501 (1045)
T 1k32_A          499 DRV  501 (1045)
T ss_dssp             CSS
T ss_pred             chh
Confidence            754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-33  Score=309.20  Aligned_cols=252  Identities=22%  Similarity=0.349  Sum_probs=212.4

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECC--CCcEEEEEeccCCcEEEEEEcCC--CC-EEEEECCCcEEE
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIK--SGHEICTYRGHQNVVYAVAFSEP--YG-CLTGSYDRTCKL  254 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~--~~~~~~~~~~h~~~I~~l~fs~~--~~-lls~s~d~~I~i  254 (616)
                      ...+.+|.++|++++|+|+|++|++|+.||+|+|||+.  +++....+.+|.++|++++|+++  +. +++++.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            35788999999999999999999999999999999998  55778889999999999999987  66 559999999999


Q ss_pred             EeCCCCc--eEEEeeCCCCcEEEEEEeCCC--CCEEEEEECCCeEEEEeCCCcc--eeEEeeece---eeEEEcC-----
Q psy3640         255 WDIKSGH--EICTYRGHQNVVYAVAFSEPY--GDKILTGSFDKTLKLWASAKEE--CIQTYRGHS---AEVTFSP-----  320 (616)
Q Consensus       255 wd~~~~~--~~~~~~~h~~~V~~l~~~~~~--~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~---~~v~~~~-----  320 (616)
                      ||+.+++  .+..+.+|...|.+++|+ |+  ++.+++|+.||.|++||+.++.  ....+.+|.   ..++|+|     
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EECCCCcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            9999987  778888999999999999 66  8999999999999999998873  334444444   4558999     


Q ss_pred             --------CCCEEEEEeCCCcEEEEECCCC----ceeEEeecCCcCEEEEEEcCC---CCEEEEEECCCcEEEEeccccc
Q psy3640         321 --------DQSTFCSCSMDHTARIFNTNSG----QEMHTLKAHTGPVISLQFSSD---RNMLITGSFDSSIVVWDIQYQF  385 (616)
Q Consensus       321 --------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~~~~---~~~l~~g~~dg~i~iwd~~~~~  385 (616)
                              ++..+++|+.||.|++||++++    .....+.+|..+|.+++|+|+   ++++++++.||.|++||++...
T Consensus       161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence                    5899999999999999999877    556777889999999999999   8999999999999999997431


Q ss_pred             CCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe
Q psy3640         386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC  443 (616)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  443 (616)
                      ..           ..........|...+.+++|+|++.++++++.||.|++||+.++.
T Consensus       241 ~~-----------~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          241 GP-----------WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SC-----------CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             Cc-----------ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            11           111223335578899999999999999999999999999998643

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=3.8e-31  Score=303.15  Aligned_cols=395  Identities=12%  Similarity=0.075  Sum_probs=306.7

Q ss_pred             CCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEEC------CCcEEEEeCC
Q psy3640         186 HLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSY------DRTCKLWDIK  258 (616)
Q Consensus       186 h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~------d~~I~iwd~~  258 (616)
                      +...+.+.+|||  +.||.++. +.|.+|++.+++. ..+.+|...+.+++|||||+.+ .++.      +..|++||+.
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~   88 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE   88 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC
Confidence            566789999995  58888776 6899999988764 5778899999999999999955 3432      2489999998


Q ss_pred             CCceEEEeeCCCCcE-------EEEEEeCCCCCEEEEEECC------CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEE
Q psy3640         259 SGHEICTYRGHQNVV-------YAVAFSEPYGDKILTGSFD------KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTF  325 (616)
Q Consensus       259 ~~~~~~~~~~h~~~V-------~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l  325 (616)
                      +++ ...+..|...+       ..++|+ |+++.+++++.+      ..|..|++.+++.......+...++|+| + .+
T Consensus        89 ~g~-~~~lt~~~~~~~~~~~~~~~~~~S-pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~sp-G-~l  164 (1045)
T 1k32_A           89 NGE-IKRITYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFAD-G-RR  164 (1045)
T ss_dssp             TTE-EEECCCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEET-T-EE
T ss_pred             CCC-eEEcccCCCcccccccccccccCC-CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCC-C-EE
Confidence            887 56788898888       999999 788877777654      4688888887776554455556678999 7 88


Q ss_pred             EEEeC------------CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640         326 CSCSM------------DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       326 ~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      ++++.            +....+|....+.....+..|...+.++.|+++ .++++++.++.+.+|.+..          
T Consensus       165 ~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~----------  233 (1045)
T 1k32_A          165 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDL----------  233 (1045)
T ss_dssp             EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEET----------
T ss_pred             EEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeC----------
Confidence            87753            234566654333455666889999999999988 6677778889999998762          


Q ss_pred             cccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-----------CCCCEEEEEEc-
Q psy3640         394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN-----------HEDEVLDIAFD-  461 (616)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~l~~~-  461 (616)
                           .......+..+. .+...+|+|+|+.++.+. ++.|++||+.... +..+..           +...+.+++|+ 
T Consensus       234 -----~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~  305 (1045)
T 1k32_A          234 -----DGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSP  305 (1045)
T ss_dssp             -----TSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEE
T ss_pred             -----CCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCcccccccccccccccceeeecC
Confidence                 122333444444 456779999999988874 8899999995543 335443           23468899999 


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEE-EEecCCceEEeEEeecc
Q psy3640         462 YSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK-LWTVGGAVELLQTFYGH  540 (616)
Q Consensus       462 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~h  540 (616)
                      |+|+.+++++ ++.+.+|+.......  .+..+.  ...+..++|+ +|+.++.++.++.+. +|+..++. .. .+.+|
T Consensus       306 pdG~~la~~~-~~~i~~~~~~~~~~~--~~~~~~--~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~-~~-~l~~~  377 (1045)
T 1k32_A          306 LDGDLIAFVS-RGQAFIQDVSGTYVL--KVPEPL--RIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK-AE-KFEEN  377 (1045)
T ss_dssp             CGGGCEEEEE-TTEEEEECTTSSBEE--ECSCCS--CEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC-EE-ECCCC
T ss_pred             CCCCEEEEEE-cCEEEEEcCCCCceE--EccCCC--cceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC-ce-EecCC
Confidence            9999999887 789999998765322  122222  1257789999 999999999988888 99987743 22 33478


Q ss_pred             ccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCC----------cEEEc
Q psy3640         541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDN----------TCCIW  610 (616)
Q Consensus       541 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg----------~i~vW  610 (616)
                      ...+..++|+|||++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++|
T Consensus       378 ~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~  457 (1045)
T 1k32_A          378 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVY  457 (1045)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEE
T ss_pred             ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEE
Confidence            88999999999999999999999999999999998888888999999999999999999887654          89999


Q ss_pred             ccCCC
Q psy3640         611 RSMNR  615 (616)
Q Consensus       611 ~~~~~  615 (616)
                      |+.+.
T Consensus       458 d~~~g  462 (1045)
T 1k32_A          458 DMEGR  462 (1045)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            98753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=276.82  Aligned_cols=350  Identities=12%  Similarity=0.011  Sum_probs=238.9

Q ss_pred             CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCc---eEEEeeCCCCcEEEEEEe--CCCCCEEEEEECCCeE-E------
Q psy3640         229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGH---EICTYRGHQNVVYAVAFS--EPYGDKILTGSFDKTL-K------  296 (616)
Q Consensus       229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~---~~~~~~~h~~~V~~l~~~--~~~~~~l~s~s~dg~i-~------  296 (616)
                      ..++.+++|++++++++++.++.|++||+.+|+   .+..+..+........+.  +..+..+.....+..- +      
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            357889999999998888889999999999999   777777665433333221  1112222222111100 0      


Q ss_pred             ----EEeCC-CcceeEEeeeceeeEEEcCCCCEE-EEEeCCCcEEEEECC--CCceeEEee--cCCcCEEEEEEcCCCCE
Q psy3640         297 ----LWASA-KEECIQTYRGHSAEVTFSPDQSTF-CSCSMDHTARIFNTN--SGQEMHTLK--AHTGPVISLQFSSDRNM  366 (616)
Q Consensus       297 ----iwd~~-~~~~~~~~~~~~~~v~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~--~~~~~v~~l~~~~~~~~  366 (616)
                          .|... .+.......+....++|+|++++| ++++.||.|++||+.  +++.+..+.  .|...|.+++|+|++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                00000 000000112234567899999996 889899999999999  888888876  56789999999999999


Q ss_pred             EEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC---CCEEEEEeCCCcEEEEeCCCCe
Q psy3640         367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS---NSMIASSSLDGTAKLWDVRTMC  443 (616)
Q Consensus       367 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~  443 (616)
                      |++|+.+|.+++|++......            ..+...+.+|...|.+++|+|+   +++|++++.|+.|++||+++++
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~  231 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEE------------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCF  231 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCS------------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTT
T ss_pred             EEEEeCCCcEEEEecCCcccc------------cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCc
Confidence            999999999999998732110            0033356789999999999999   9999999999999999999998


Q ss_pred             EEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcE
Q psy3640         444 CFYT-LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA  522 (616)
Q Consensus       444 ~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  522 (616)
                      .+.. +.+|...|.+++|+ ++.+|++++.|+.|++||+.++... ..+..+... ..   +.+....            
T Consensus       232 ~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~-~~---~~~~~~~------------  293 (450)
T 2vdu_B          232 IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL-STFDYNSLI-KP---YLNDQHL------------  293 (450)
T ss_dssp             CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE-EEEECHHHH-GG---GCCTTSB------------
T ss_pred             eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe-eeecchhhh-hh---hhhhccc------------
Confidence            8877 55899999999999 9999999999999999999876432 222211000 00   0000000            


Q ss_pred             EEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEecC--CcC---eeeeEeccCcccEEEEEEeeCCC
Q psy3640         523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWST--ESG---ECIQVLKAHEDDVFSCGFNYNGD  596 (616)
Q Consensus       523 ~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~--~~~---~~~~~~~~h~~~V~~l~~s~~~~  596 (616)
                           ............+...|.+++|+|++++|++++ .|+.|++|++  .++   +.+..+..| +.|.+++|+|++.
T Consensus       294 -----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~  367 (450)
T 2vdu_B          294 -----APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEF  367 (450)
T ss_dssp             -----C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEE
T ss_pred             -----ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcE
Confidence                 000000001113456799999999999999999 8999999999  666   778888888 8899999999644


Q ss_pred             EEEEeeC------CCcEEEcccCC
Q psy3640         597 TIITASK------DNTCCIWRSMN  614 (616)
Q Consensus       597 ~l~t~s~------Dg~i~vW~~~~  614 (616)
                      ++++++.      ++.|.+|.+..
T Consensus       368 ~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          368 QVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEEecccCCCCCCcceEEEEEEc
Confidence            4444443      55689988754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-31  Score=268.99  Aligned_cols=305  Identities=13%  Similarity=0.152  Sum_probs=214.8

Q ss_pred             EEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEE-EEEEC
Q psy3640         213 LWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSF  291 (616)
Q Consensus       213 iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~  291 (616)
                      ||++.+.+.+..+.+|...|.+++|+||+.+++++.+..+++||+.+++.......+  .+..+++. ++++.+ ++++.
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~   79 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR--HLSKVRML-HRTNYVAFVTGV   79 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS--CCCEEEEC-TTSSEEEEECSS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC--CeEEEEEc-CCCCEEEEEECC
Confidence            577777888888899999999999999999887777777999999988776655433  47777887 555655 67788


Q ss_pred             CCeEEEEeCCCcceeEEeeecee--eEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEeecCCcCEEEEEEcCCCCEEE
Q psy3640         292 DKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSG-QEMHTLKAHTGPVISLQFSSDRNMLI  368 (616)
Q Consensus       292 dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~~~~~~l~  368 (616)
                      |++|++||..+++.+..+..+..  .++++++  .++++ .++.|++||+.++ +.+..+..   +...+++++  ..++
T Consensus        80 d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la  151 (355)
T 3vu4_A           80 KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLV  151 (355)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEE
T ss_pred             ccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEE
Confidence            89999999999998888764443  3456554  45544 4789999999988 66666554   444566666  5666


Q ss_pred             E--EECCCcEEEEecccccCCcccccccccccCCcc-eEEEecCccceeEEEEccCCCEEEEEeCCCc-EEEEeCCCCeE
Q psy3640         369 T--GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKP-IHILTGHSQEISNCLFNFSNSMIASSSLDGT-AKLWDVRTMCC  444 (616)
Q Consensus       369 ~--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~  444 (616)
                      +  |+.||.|++||+.......... .........+ ...+.+|...|.+++|+|++++|++|+.|++ |++||++++++
T Consensus       152 ~~sg~~~g~v~iwd~~~~~~~~~~~-~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          152 YSNEFNLGQIHITKLQSSGSATTQD-QGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEESSCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EeCCCcCcEEEEEECCCCCcccccc-ccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            6  5789999999997432110000 0000001123 6788999999999999999999999999998 99999999999


Q ss_pred             EEEee-c-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEE-------------------eccCCCeeeEEE
Q psy3640         445 FYTLK-N-HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTF-------------------YGHSNEVSKVLD  503 (616)
Q Consensus       445 ~~~~~-~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------~~~~~~~~~i~~  503 (616)
                      +..+. + |...|.+++|+|++++|++++.|++|++||+..........                   .-..........
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCK  310 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCE
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceE
Confidence            99998 5 99999999999999999999999999999997542111100                   000111112256


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         504 IAFDYSGSKLATASSDQTAKLWTVGG  529 (616)
Q Consensus       504 ~~~s~~~~~l~~~~~dg~i~vwd~~~  529 (616)
                      ++|+++++++++++.||.+++|++..
T Consensus       311 ~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          311 IAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            89999999999999999999998743

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.7e-30  Score=267.40  Aligned_cols=296  Identities=10%  Similarity=0.134  Sum_probs=240.7

Q ss_pred             eEEEEeCCCc--ceeEEeeece--eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----EeecCCcCEEEEEEcCCC
Q psy3640         294 TLKLWASAKE--ECIQTYRGHS--AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMH-----TLKAHTGPVISLQFSSDR  364 (616)
Q Consensus       294 ~i~iwd~~~~--~~~~~~~~~~--~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~v~~l~~~~~~  364 (616)
                      .|..||..++  +.+..+..+.  ..++|+|++.++++++.++.|++||+.+++...     .+.+|...|.+++|+|++
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~  181 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN  181 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC
Confidence            4444444334  4555554333  356899977777888888999999999998887     345788899999999999


Q ss_pred             CEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCe
Q psy3640         365 NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMC  443 (616)
Q Consensus       365 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~  443 (616)
                      .++++++.|+.|++||++                .......+..|...+.+++|+|+++.+++++ .++.|++||+++++
T Consensus       182 ~~~~s~~~d~~v~~~d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          182 ELWVSQMQANAVHVFDLK----------------TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             EEEEEEGGGTEEEEEETT----------------TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEEEEECCCCEEEEEECC----------------CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence            999999999999999997                6677777888899999999999999885554 78999999999999


Q ss_pred             EEEEeecCCCCEEEEEEcCCCCEEEEEe--------CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE-E
Q psy3640         444 CFYTLKNHEDEVLDIAFDYSGSKLATAS--------SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL-A  514 (616)
Q Consensus       444 ~~~~~~~~~~~v~~l~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~  514 (616)
                      .+..+.. ...+.+++|+|+++.+++++        .|+.|++||+.+...... . .+   ...+..++|+|+++.+ +
T Consensus       246 ~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~-~~---~~~~~~~~~~~~g~~l~~  319 (433)
T 3bws_A          246 EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT-I-GP---PGNKRHIVSGNTENKIYV  319 (433)
T ss_dssp             EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE-E-EE---EECEEEEEECSSTTEEEE
T ss_pred             EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee-c-cC---CCCcceEEECCCCCEEEE
Confidence            8888765 45699999999999999888        588999999987643322 2 11   2246789999999765 5


Q ss_pred             EEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEEC---------------CCcEEEecCCcCeeeeEe
Q psy3640         515 TASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ---------------DTTCRLWSTESGECIQVL  579 (616)
Q Consensus       515 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~---------------dg~i~iwd~~~~~~~~~~  579 (616)
                      +++.++.|++||+.+. +....+. +...+.+++|+|+|++|++++.               ||.|++||+.+++.+..+
T Consensus       320 ~~~~~~~v~v~d~~~~-~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~  397 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEK-KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW  397 (433)
T ss_dssp             EETTTTEEEEEETTTT-EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred             EecCCCEEEEEECCCC-cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence            6688999999999875 4444443 7788999999999999998876               579999999999999888


Q ss_pred             ccCcccEEEEEEeeCCCEEEEeeC-CCcEEEcccCC
Q psy3640         580 KAHEDDVFSCGFNYNGDTIITASK-DNTCCIWRSMN  614 (616)
Q Consensus       580 ~~h~~~V~~l~~s~~~~~l~t~s~-Dg~i~vW~~~~  614 (616)
                      ..+ ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus       398 ~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          398 EAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             ECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             cCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            864 56899999999999998875 99999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=9.7e-31  Score=250.32  Aligned_cols=291  Identities=10%  Similarity=0.096  Sum_probs=206.4

Q ss_pred             EEEEEEcCCCC---EEEEECCCcEEEEeCCCC---ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce
Q psy3640         232 VYAVAFSEPYG---CLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC  305 (616)
Q Consensus       232 I~~l~fs~~~~---lls~s~d~~I~iwd~~~~---~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~  305 (616)
                      +.++.|-..+-   .+.......|++|+..++   +.++++..|..+|..+.+.|...+++..+-..       ++    
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-------~~----  110 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN-------LE----  110 (356)
T ss_dssp             EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-------SS----
T ss_pred             EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-------cc----
Confidence            34444543333   556667889999999999   89999999999999999995444444433321       11    


Q ss_pred             eEEeeeceeeEEEcCC----CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEE
Q psy3640         306 IQTYRGHSAEVTFSPD----QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS--FDSSIVVW  379 (616)
Q Consensus       306 ~~~~~~~~~~v~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~--~dg~i~iw  379 (616)
                          ......++++|+    +..+++++.+  +.+|++.+++                      ++.+++  .|+.|++|
T Consensus       111 ----~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~----------------------lv~ss~~g~d~~V~~~  162 (356)
T 2w18_A          111 ----IREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRR----------------------LVSSSGTLSDQQVEVM  162 (356)
T ss_dssp             ----EEEEEEECC------CCEEEEEEEEE--EEEEEETTTE----------------------EEEEESSSTTCEEEEE
T ss_pred             ----ccceEEEEECCCccccccEEEeCCCe--EEEEecCCCc----------------------EEEecccCCCCcEEEE
Confidence                123345679999    8889987744  6667554333                      333322  36666666


Q ss_pred             ecccccCCcccccccccccCCcceEEEecCccceeEEEEcc---CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC---C
Q psy3640         380 DIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF---SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE---D  453 (616)
Q Consensus       380 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~  453 (616)
                      ++..               .++.+..+..|...+..++|++   ++..|++++.|++|++||+++++++.++.+|.   .
T Consensus       163 ~~s~---------------dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~  227 (356)
T 2w18_A          163 TFAE---------------DGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA  227 (356)
T ss_dssp             EECT---------------TSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred             EECC---------------CCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence            6641               3445556678888999999999   77999999999999999999999999998654   3


Q ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE
Q psy3640         454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL  533 (616)
Q Consensus       454 ~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~  533 (616)
                      .+.+++|+|+|.++++++.+..  +|                                .+++|+.|++|++||..++ ..
T Consensus       228 ~v~~vafSpdG~~lvs~s~~~~--~w--------------------------------~laSGs~D~tIklWd~~tg-k~  272 (356)
T 2w18_A          228 SVCHKAYSEMGLLFIVLSHPCA--KE--------------------------------SESLRSPVFQLIVINPKTT-LS  272 (356)
T ss_dssp             CCEEEEEEETTEEEEEEC----------------------------------------------CCEEEEEEETTTT-EE
T ss_pred             eeEEEEECCCCCEEEEeccCCC--cc--------------------------------eeeccCCCcEEEEEECCCC-EE
Confidence            5778899999999888765422  23                                3567788999999998875 33


Q ss_pred             eEEe-----eccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEE-EEEEeeCCCEEEEeeCCCcE
Q psy3640         534 LQTF-----YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF-SCGFNYNGDTIITASKDNTC  607 (616)
Q Consensus       534 ~~~~-----~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~t~s~Dg~i  607 (616)
                      +..+     .+|...+.+..+  ++.++|+|+.|++|+|||+.+++++.++.+|.+.+. .++|+|||++|++|+.|++|
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             EEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            3332     366666544444  488999999999999999999999999999988765 58999999999999999999


Q ss_pred             EEcccC
Q psy3640         608 CIWRSM  613 (616)
Q Consensus       608 ~vW~~~  613 (616)
                      +|||+.
T Consensus       351 klWd~~  356 (356)
T 2w18_A          351 FVYHYS  356 (356)
T ss_dssp             EEEEEC
T ss_pred             EEecCC
Confidence            999963

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.2e-31  Score=273.99  Aligned_cols=276  Identities=11%  Similarity=0.076  Sum_probs=228.2

Q ss_pred             CcceEEEEECCCCCEEEEEECCCcEEEEECCCCc---EEEEEec------------------------------------
Q psy3640         187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH---EICTYRG------------------------------------  227 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~---~~~~~~~------------------------------------  227 (616)
                      ..++++++|+|+|++|+++ .++.|++||+.+|+   .+..+..                                    
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3589999999999976666 47799999999998   6665553                                    


Q ss_pred             ------------------cCCcEEEEEEcCCCCE--EEEECCCcEEEEeCC--CCceEEEee--CCCCcEEEEEEeCCCC
Q psy3640         228 ------------------HQNVVYAVAFSEPYGC--LTGSYDRTCKLWDIK--SGHEICTYR--GHQNVVYAVAFSEPYG  283 (616)
Q Consensus       228 ------------------h~~~I~~l~fs~~~~l--ls~s~d~~I~iwd~~--~~~~~~~~~--~h~~~V~~l~~~~~~~  283 (616)
                                        |.+.|.+++|+|++++  ++++.|+.|++||+.  +++.+..+.  .|...|.+++|+ |++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCC
Confidence                              3337999999999995  377799999999999  888888876  577899999999 889


Q ss_pred             CEEEEEECCCeEEEEeCCCcceeE----Eeeece---eeEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEE-eecCC
Q psy3640         284 DKILTGSFDKTLKLWASAKEECIQ----TYRGHS---AEVTFSPD---QSTFCSCSMDHTARIFNTNSGQEMHT-LKAHT  352 (616)
Q Consensus       284 ~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~---~~v~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~  352 (616)
                      .+|++++.+|.+++|++.+++...    .+.+|.   ..++|+|+   +.++++++.|+.|++||+.+++.+.. +.+|.
T Consensus       162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence            999999999999999998876543    555554   45689999   99999999999999999999988877 56899


Q ss_pred             cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe-------------------------
Q psy3640         353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT-------------------------  407 (616)
Q Consensus       353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  407 (616)
                      ..|.+++|+ ++++|++++.|+.|++||++.                ...+..+.                         
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKT----------------GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND  304 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTT----------------CCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCC----------------CcEeeeecchhhhhhhhhhcccccccccccccc
Confidence            999999999 999999999999999999973                33333332                         


Q ss_pred             cCccceeEEEEccCCCEEEEEe-CCCcEEEEeC--CCC---eEEEEeecCCCCEEEEEEcCCCCEEEEE-eC------CC
Q psy3640         408 GHSQEISNCLFNFSNSMIASSS-LDGTAKLWDV--RTM---CCFYTLKNHEDEVLDIAFDYSGSKLATA-SS------DQ  474 (616)
Q Consensus       408 ~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~------dg  474 (616)
                      .....+..++|+|+++++++++ .++.|++|++  .++   ..+..+..+ ..|.+++|+|++ .+++. +.      +.
T Consensus       305 ~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~  382 (450)
T 2vdu_B          305 IIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKN  382 (450)
T ss_dssp             CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCC
T ss_pred             cceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCc
Confidence            2345688999999999999999 8999999999  555   777778877 889999999964 44444 32      45


Q ss_pred             cEEEEecCC
Q psy3640         475 TANLWTVGG  483 (616)
Q Consensus       475 ~i~iwd~~~  483 (616)
                      .|.+|.+..
T Consensus       383 ~i~v~~~~~  391 (450)
T 2vdu_B          383 FAKFIEYNL  391 (450)
T ss_dssp             SEEEEEEET
T ss_pred             ceEEEEEEc
Confidence            578887653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1e-29  Score=259.22  Aligned_cols=330  Identities=16%  Similarity=0.140  Sum_probs=255.9

Q ss_pred             CEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEE
Q psy3640         200 TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVA  277 (616)
Q Consensus       200 ~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~  277 (616)
                      ..+++++.|+.|++||+.+++.+..+..|.. +.+++|+|++..+  +++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence            4678889999999999999999998887754 8999999999843  66689999999999999998888665 999999


Q ss_pred             EeCCCCCEEEE-EECCCeEEEEeCCCcceeEEeeece--eeEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecCCc
Q psy3640         278 FSEPYGDKILT-GSFDKTLKLWASAKEECIQTYRGHS--AEVTFSPDQSTF-CSCSMDHTARIFNTNSGQEMHTLKAHTG  353 (616)
Q Consensus       278 ~~~~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~  353 (616)
                      |+ |++++++. ++.++.|++||+.+++.+..+..+.  ..++|+|+++.+ ++++.++.|++||+.+++.+..+..+ .
T Consensus        81 ~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           81 VS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             EC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             EC-CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            99 77887755 4567999999999999888776543  456899999987 67778999999999999988888765 4


Q ss_pred             CEEEEEEcCCCCEE-EEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe---
Q psy3640         354 PVISLQFSSDRNML-ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS---  429 (616)
Q Consensus       354 ~v~~l~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---  429 (616)
                      .+.+++|+|+++.+ ++++.++.|++||++                .......+. +...+.+++|+|+++.+++++   
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~----------------~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~  221 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTV----------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK  221 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETT----------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECC----------------CCeEEEEEe-cCCCccceEECCCCCEEEEEecCc
Confidence            56999999999887 567788999999997                444444443 456788999999999999888   


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCceeeeeEEeccCCCee---------
Q psy3640         430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKL-ATASSDQTANLWTVGGAVELLQTFYGHSNEVS---------  499 (616)
Q Consensus       430 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---------  499 (616)
                      .++.|++||+++++.+..+..+. .+.+++|+|+++++ ++++.|+.+++||+.++.. ...+..+..+..         
T Consensus       222 ~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~  299 (391)
T 1l0q_A          222 YFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI-TATMAVGKNPYASGQFIGSIP  299 (391)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEECSSSEECCSSCEEECS
T ss_pred             CCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE-EEEEECCcCCCccceeeeccc
Confidence            68999999999999988887654 58899999999987 5668899999999987633 333333322211         


Q ss_pred             -----eEEEEEEcCC------C--CEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640         500 -----KVLDIAFDYS------G--SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG  559 (616)
Q Consensus       500 -----~i~~~~~s~~------~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~  559 (616)
                           .+..+...+.      .  ..+...+.+...++|+..++...     .+..+  ...|+|+|.+.++.
T Consensus       300 ~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~~  365 (391)
T 1l0q_A          300 VQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS-----KKQNP--THTYSETGIYTVRL  365 (391)
T ss_dssp             SCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE-----CSSSC--EECCSSCEEEEEEE
T ss_pred             ccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc-----CcCCC--eEEeCCCceEEEEE
Confidence                 1111111111      1  23555566888999999775331     22233  36789999887754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=268.66  Aligned_cols=274  Identities=10%  Similarity=0.028  Sum_probs=204.7

Q ss_pred             EEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc
Q psy3640         193 ITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV  272 (616)
Q Consensus       193 v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~  272 (616)
                      ..+.+++.++++|+.||+|++||+.+++.+..+.  ...|.++.|+|+  +++++.|++|++|+...             
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~-------------  104 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGN-------------  104 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTT-------------
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccC-------------
Confidence            3455678999999999999999999999888877  466778888888  88999999999997653             


Q ss_pred             EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----eceeeEEEcC--CCCEEEEEeCCCcEEEEECCCCceeE
Q psy3640         273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----GHSAEVTFSP--DQSTFCSCSMDHTARIFNTNSGQEMH  346 (616)
Q Consensus       273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  346 (616)
                                           .+.+|+..+++.+..+.    .....++++|  +++++++++.||.|++||+++++...
T Consensus       105 ---------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~  163 (343)
T 3lrv_A          105 ---------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYI  163 (343)
T ss_dssp             ---------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEE
T ss_pred             ---------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence                                 23344444444444333    2233445666  66666666666666677766666655


Q ss_pred             Eee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcce-EEEec-CccceeEEEEccCCC
Q psy3640         347 TLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI-HILTG-HSQEISNCLFNFSNS  423 (616)
Q Consensus       347 ~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~~  423 (616)
                      ... .|...+.+++|+|++.+|++|+.||.|++||++                ..... ..+.. |..+|.+++|+|++.
T Consensus       164 ~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~----------------~~~~~~~~~~~~h~~~v~~l~fs~~g~  227 (343)
T 3lrv_A          164 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS----------------SPDQASSRFPVDEEAKIKEVKFADNGY  227 (343)
T ss_dssp             EECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS----------------CTTSCCEECCCCTTSCEEEEEECTTSS
T ss_pred             EEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC----------------CCCCCccEEeccCCCCEEEEEEeCCCC
Confidence            443 355679999999999999999999999999998                44444 56666 999999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeec---CCCCEE--EEEEcCCCCEEEEEeC-CCcEEEEecCCceeeeeEEeccCCC
Q psy3640         424 MIASSSLDGTAKLWDVRTMCCFYTLKN---HEDEVL--DIAFDYSGSKLATASS-DQTANLWTVGGAVELLQTFYGHSNE  497 (616)
Q Consensus       424 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~--~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~  497 (616)
                      +|++++ ++.|++||+++++.+..+..   +...+.  +++|+|++++|++++. |+.+++|++.........       
T Consensus       228 ~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-------  299 (343)
T 3lrv_A          228 WMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-------  299 (343)
T ss_dssp             EEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-------
T ss_pred             EEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-------
Confidence            999999 55999999999876655443   333343  6999999999999998 999999999665333222       


Q ss_pred             eeeEEEEEEcC---CCCEEEEEeCCCcEEEEecCC
Q psy3640         498 VSKVLDIAFDY---SGSKLATASSDQTAKLWTVGG  529 (616)
Q Consensus       498 ~~~i~~~~~s~---~~~~l~~~~~dg~i~vwd~~~  529 (616)
                       ..+..++|.+   +...+++++.|+.+.++-...
T Consensus       300 -~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          300 -DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             -EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             -cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence             3466778888   888999999999888876544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.3e-31  Score=272.76  Aligned_cols=260  Identities=22%  Similarity=0.333  Sum_probs=220.0

Q ss_pred             EEeecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCC-
Q psy3640         346 HTLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-  423 (616)
Q Consensus       346 ~~~~~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-  423 (616)
                      .....|.+.|.+++|+|+ +.++++++.+|.|++||+........      ......+...+.+|...+.+++|+|++. 
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~  195 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE------PSGECQPDLRLRGHQKEGYGLSWNPNLNG  195 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC------TTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC------ccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence            445569999999999997 67999999999999999974221110      0113567788889999999999999988 


Q ss_pred             EEEEEeCCCcEEEEeCCCCeE-------EEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCce--eeeeEEec
Q psy3640         424 MIASSSLDGTAKLWDVRTMCC-------FYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGAV--ELLQTFYG  493 (616)
Q Consensus       424 ~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~  493 (616)
                      +|++|+.||.|++||+.++..       ...+..|...|.+++|+| ++.++++++.||.|++||++...  .....+..
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence            999999999999999987322       456678999999999999 67899999999999999998753  34444444


Q ss_pred             cCCCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCC-EEEEEECCCcEEEecCC
Q psy3640         494 HSNEVSKVLDIAFDYSGS-KLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       494 ~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s~dg~i~iwd~~  571 (616)
                      |.   ..+.+++|+|++. ++++|+.||.|++||++.....+..+..|...|++++|+|+++ +|++++.||.|++||+.
T Consensus       276 ~~---~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~  352 (430)
T 2xyi_A          276 HT---AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS  352 (430)
T ss_dssp             CS---SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred             CC---CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence            44   3588999999987 6899999999999999886667788889999999999999985 69999999999999998


Q ss_pred             c--------------CeeeeEeccCcccEEEEEEeeCCC-EEEEeeCCCcEEEcccCC
Q psy3640         572 S--------------GECIQVLKAHEDDVFSCGFNYNGD-TIITASKDNTCCIWRSMN  614 (616)
Q Consensus       572 ~--------------~~~~~~~~~h~~~V~~l~~s~~~~-~l~t~s~Dg~i~vW~~~~  614 (616)
                      .              .+.+..+.+|...|.+++|+|+++ +|++++.||.|++|++..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            7              367788889999999999999999 999999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-30  Score=268.59  Aligned_cols=282  Identities=22%  Similarity=0.353  Sum_probs=235.5

Q ss_pred             CcceEEEEECCCC----------CEEEEEEC----CCcEEEEECC--------------------------CCcE-EEEE
Q psy3640         187 LLPLTNITFDKFG----------TRCLTGSY----DRTCKLWDIK--------------------------SGHE-ICTY  225 (616)
Q Consensus       187 ~~~i~~v~~s~~g----------~~lasgs~----dg~i~iwd~~--------------------------~~~~-~~~~  225 (616)
                      .-|..++.|.|+.          .+++.|+.    ...|.+.++.                          +++. ....
T Consensus        45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  124 (430)
T 2xyi_A           45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK  124 (430)
T ss_dssp             SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred             CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence            3478999999975          46888875    3457777542                          1112 2455


Q ss_pred             eccCCcEEEEEEcCC-CC-EEEEECCCcEEEEeCCC----------CceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECC
Q psy3640         226 RGHQNVVYAVAFSEP-YG-CLTGSYDRTCKLWDIKS----------GHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFD  292 (616)
Q Consensus       226 ~~h~~~I~~l~fs~~-~~-lls~s~d~~I~iwd~~~----------~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~d  292 (616)
                      .+|.+.|++++|+|+ +. +++++.+|.|++||+.+          .+.+..+.+|...|++++|+ +++. +|++|+.|
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~d  203 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWN-PNLNGYLLSASDD  203 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEEC-TTSTTEEEEECTT
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeC-CCCCCeEEEEeCC
Confidence            689999999999998 44 45888999999999987          67888999999999999999 5555 99999999


Q ss_pred             CeEEEEeCCCcce-------eEEeeece---eeEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEeecCCcCEEEE
Q psy3640         293 KTLKLWASAKEEC-------IQTYRGHS---AEVTFSP-DQSTFCSCSMDHTARIFNTNSG---QEMHTLKAHTGPVISL  358 (616)
Q Consensus       293 g~i~iwd~~~~~~-------~~~~~~~~---~~v~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l  358 (616)
                      |.|++|++.++..       ...+.+|.   ..++|+| ++..+++++.||.|++||++++   +.+..+..|...|.++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i  283 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCL  283 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEE
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEE
Confidence            9999999987422       34455554   4568999 7889999999999999999987   5777888999999999


Q ss_pred             EEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCC-EEEEEeCCCcEEE
Q psy3640         359 QFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIASSSLDGTAKL  436 (616)
Q Consensus       359 ~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i  436 (616)
                      +|+|++. ++++|+.||.|++||++.               ...++..+..|...|.+++|+|++. ++++++.||.|++
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~---------------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~i  348 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRN---------------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV  348 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTC---------------TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEE
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCC---------------CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEE
Confidence            9999887 789999999999999973               2456788889999999999999985 7999999999999


Q ss_pred             EeCCC--------------CeEEEEeecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCc
Q psy3640         437 WDVRT--------------MCCFYTLKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGA  484 (616)
Q Consensus       437 wd~~~--------------~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~  484 (616)
                      ||+..              .+.+..+.+|...|.+++|+|+++ ++++++.||.|++|++...
T Consensus       349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99987              366777888999999999999999 8999999999999999753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.5e-29  Score=256.33  Aligned_cols=304  Identities=18%  Similarity=0.184  Sum_probs=238.4

Q ss_pred             EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEE-EEEECCCeEEEEeCCCcceeEEeeece--eeEEEc
Q psy3640         243 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHS--AEVTFS  319 (616)
Q Consensus       243 lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~  319 (616)
                      +++++.|+.|++||+.+++.+..+..|. .+.+++|+ ++++.+ ++++.|+.|++||+.+++.+..+..+.  ..++|+
T Consensus         5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s   82 (391)
T 1l0q_A            5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVS   82 (391)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             EEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEEC
Confidence            4588899999999999999999998775 48999999 778776 677789999999999999888876544  456899


Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEecccccCCcccccccccc
Q psy3640         320 PDQSTFCSCS-MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML-ITGSFDSSIVVWDIQYQFGTRNAYAESTYR  397 (616)
Q Consensus       320 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  397 (616)
                      |+++++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+.               
T Consensus        83 pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~---------------  146 (391)
T 1l0q_A           83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTV---------------  146 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT---------------
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC---------------
Confidence            9999886555 569999999999998888775 4578999999999977 677789999999987               


Q ss_pred             cCCcceEEEecCccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe---CC
Q psy3640         398 ASHKPIHILTGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS---SD  473 (616)
Q Consensus       398 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~---~d  473 (616)
                       .......+..+ ..+..++|+|+++.+ ++++.++.|++||+++++....+. +...+.+++|+|+++++++++   .+
T Consensus       147 -~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~  223 (391)
T 1l0q_A          147 -TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYF  223 (391)
T ss_dssp             -TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             -CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCC
Confidence             55555555554 456899999999887 567788999999999998877765 455778888888888887776   56


Q ss_pred             CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC
Q psy3640         474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG  553 (616)
Q Consensus       474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg  553 (616)
                      +.|++||+.+.                                               +.+..+..| ..+.+++|+|++
T Consensus       224 ~~v~~~d~~~~-----------------------------------------------~~~~~~~~~-~~~~~~~~s~dg  255 (391)
T 1l0q_A          224 NTVSMIDTGTN-----------------------------------------------KITARIPVG-PDPAGIAVTPDG  255 (391)
T ss_dssp             CEEEEEETTTT-----------------------------------------------EEEEEEECC-SSEEEEEECTTS
T ss_pred             CcEEEEECCCC-----------------------------------------------eEEEEEecC-CCccEEEEccCC
Confidence            77777776543                                               223333334 357889999999


Q ss_pred             CEE-EEEECCCcEEEecCCcCeeeeEeccCcccEE---------------EEEEeeCC----------CEEEEeeCCCcE
Q psy3640         554 KLV-LSGSQDTTCRLWSTESGECIQVLKAHEDDVF---------------SCGFNYNG----------DTIITASKDNTC  607 (616)
Q Consensus       554 ~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~---------------~l~~s~~~----------~~l~t~s~Dg~i  607 (616)
                      ++| ++++.|+.|++||+.+++.+..+..|..+..               ...|+.+.          -.+...+.|...
T Consensus       256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~  335 (391)
T 1l0q_A          256 KKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE  335 (391)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence            977 5667899999999999999988877765431               11233332          346667788999


Q ss_pred             EEcccCCC
Q psy3640         608 CIWRSMNR  615 (616)
Q Consensus       608 ~vW~~~~~  615 (616)
                      ++|++.+.
T Consensus       336 ~~W~~~~g  343 (391)
T 1l0q_A          336 WKWDFGDG  343 (391)
T ss_dssp             EEEECSSS
T ss_pred             EEEECCCC
Confidence            99998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=1.5e-29  Score=261.79  Aligned_cols=333  Identities=12%  Similarity=0.125  Sum_probs=259.0

Q ss_pred             CCcceEEEE---ECCCCCEEEEEE--------------CCCcEEEEEC--CCC--cEEEEEeccCCcEEEEEEcCCCCEE
Q psy3640         186 HLLPLTNIT---FDKFGTRCLTGS--------------YDRTCKLWDI--KSG--HEICTYRGHQNVVYAVAFSEPYGCL  244 (616)
Q Consensus       186 h~~~i~~v~---~s~~g~~lasgs--------------~dg~i~iwd~--~~~--~~~~~~~~h~~~I~~l~fs~~~~ll  244 (616)
                      ....+..++   |+|+++.++..+              .++.+.||.+  .++  +.+..+..+. .+.+++|+|++.++
T Consensus        59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  137 (433)
T 3bws_A           59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLA  137 (433)
T ss_dssp             TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEE
T ss_pred             cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEE
Confidence            445667777   888877666543              2332345544  335  5555666554 45599999976665


Q ss_pred             -EEECCCcEEEEeCCCCceEE-----EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece---ee
Q psy3640         245 -TGSYDRTCKLWDIKSGHEIC-----TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS---AE  315 (616)
Q Consensus       245 -s~s~d~~I~iwd~~~~~~~~-----~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---~~  315 (616)
                       +++.++.|++||+.+++...     .+.+|...|.+++|+ +++..+++++.|+.|++||+.+++.+..+..+.   ..
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~  216 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKI  216 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeE
Confidence             56678899999999999887     445789999999997 889999999999999999999999888887554   45


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE--------CCCcEEEEecccccC
Q psy3640         316 VTFSPDQSTFCSCS-MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS--------FDSSIVVWDIQYQFG  386 (616)
Q Consensus       316 v~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~--------~dg~i~iwd~~~~~~  386 (616)
                      ++|+|+++.+++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++        .|+.|++||+.    
T Consensus       217 ~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~----  291 (433)
T 3bws_A          217 LLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD----  291 (433)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT----
T ss_pred             EEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC----
Confidence            68999999886554 7899999999999988887754 4589999999999999988        58899999996    


Q ss_pred             CcccccccccccCCcceEEEecCccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC
Q psy3640         387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS  465 (616)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  465 (616)
                                  ....... ..+...+..++|+|+++.+ ++++.++.|++||+.+++....+. +...+.+++|+|+++
T Consensus       292 ------------~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~  357 (433)
T 3bws_A          292 ------------KEKLIDT-IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGK  357 (433)
T ss_dssp             ------------TTEEEEE-EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSS
T ss_pred             ------------CCcEEee-ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCC
Confidence                        3333333 3455678899999999755 666889999999999998888776 677899999999999


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEE
Q psy3640         466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVS  545 (616)
Q Consensus       466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~  545 (616)
                      ++++++.+..-.                               ...++++|+.||.|++||..+. +....+.. ...+.
T Consensus       358 ~l~~~~~~~~~~-------------------------------~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~-~~~~~  404 (433)
T 3bws_A          358 YLYVSCRGPNHP-------------------------------TEGYLKKGLVLGKVYVIDTTTD-TVKEFWEA-GNQPT  404 (433)
T ss_dssp             EEEEEECCCCCT-------------------------------TTCTTSCCSSCCEEEEEETTTT-EEEEEEEC-SSSEE
T ss_pred             EEEEEecCCCcc-------------------------------ccccccccccceEEEEEECCCC-cEEEEecC-CCCCc
Confidence            998887642100                               2334566778888899988774 45555554 45789


Q ss_pred             EEEEecCCCEEEEEEC-CCcEEEecCCc
Q psy3640         546 KVSFHPTGKLVLSGSQ-DTTCRLWSTES  572 (616)
Q Consensus       546 ~l~~spdg~~l~s~s~-dg~i~iwd~~~  572 (616)
                      +++|+|+|++|++++. |+.|++|+++.
T Consensus       405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          405 GLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999999998875 99999999763

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-31  Score=262.99  Aligned_cols=273  Identities=13%  Similarity=0.123  Sum_probs=217.4

Q ss_pred             CCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEE
Q psy3640         239 EPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT  317 (616)
Q Consensus       239 ~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~  317 (616)
                      +++. +++|+.||+|++||+.+++.+..+.  ...|.++.|+ |.   +++++.|++|++|+...               
T Consensus        46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~-~~---~~s~s~D~~i~~w~~~~---------------  104 (343)
T 3lrv_A           46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEH-PA---IISRGPCNRLLLLYPGN---------------  104 (343)
T ss_dssp             EEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCC-CS---EEEECSTTEEEEEETTT---------------
T ss_pred             CCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeC-Cc---eEEecCCCeEEEEEccC---------------
Confidence            3444 5699999999999999999888876  4567778887 43   99999999999998653               


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cCCcCEEEEEEcC--CCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640         318 FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK-AHTGPVISLQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       318 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                                     .+.+||..+++.+..+. .|..+|.+++|+|  +++++++++.||.|++||++            
T Consensus       105 ---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~------------  157 (343)
T 3lrv_A          105 ---------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE------------  157 (343)
T ss_dssp             ---------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS------------
T ss_pred             ---------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC------------
Confidence                           56789999888666665 6778999999999  99999999999999999997            


Q ss_pred             ccccCCcceEEE-ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE-EEeec-CCCCEEEEEEcCCCCEEEEEe
Q psy3640         395 TYRASHKPIHIL-TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF-YTLKN-HEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       395 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~v~~l~~~~~~~~l~~~~  471 (616)
                          ........ ..+...+.+++|+|++.++++|+.||.|++||+++++.. ..+.. |..+|.+++|+|++.+|++++
T Consensus       158 ----~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          158 ----DDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             ----SSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             ----CCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence                44554444 345567999999999999999999999999999999877 78887 999999999999999999999


Q ss_pred             CCCcEEEEecCCceeee--eEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeeccccCEEEEE
Q psy3640         472 SDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVS  548 (616)
Q Consensus       472 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~  548 (616)
                       ++.|++||++......  ..+..+...... .+++|+|++++|++++. |+.+++|++.........     .++..++
T Consensus       234 -~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~  306 (343)
T 3lrv_A          234 -DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT-VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALC  306 (343)
T ss_dssp             -SSBEEEEETTSSTTCBSSCCCBC-----CC-EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECC
T ss_pred             -CCeEEEEEcCCCCcceeecccccccccccc-eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEe
Confidence             5599999998764321  111112222222 46999999999999998 999999999654332222     5678889


Q ss_pred             Eec---CCCEEEEEECCCcEEEecC
Q psy3640         549 FHP---TGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       549 ~sp---dg~~l~s~s~dg~i~iwd~  570 (616)
                      |+|   +++.+++++.||.+.++-.
T Consensus       307 ~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          307 LQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             C----CCCCEEEEEEETTEEEEEEE
T ss_pred             cCccccccceeEEEecCCceEEEEe
Confidence            998   8899999999999988753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=293.75  Aligned_cols=252  Identities=22%  Similarity=0.336  Sum_probs=217.0

Q ss_pred             EEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC--CC
Q psy3640         346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS--NS  423 (616)
Q Consensus       346 ~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~  423 (616)
                      ..+.+|.+.|.+++|+|+++++++|+.||.|++||+...              .......+.+|...|.+++|+++  ++
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~--------------~~~~~~~l~~h~~~V~~l~~s~~~~~~   68 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE--------------THKLIDTLTGHEGPVWRVDWAHPKFGT   68 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT--------------EEEEEEEECCCSSCEEEEEECCTTSCS
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC--------------CCccceeccCCcCceEEEEecCCCCCC
Confidence            456789999999999999999999999999999998621              34566778899999999999988  99


Q ss_pred             EEEEEeCCCcEEEEeCCCCe--EEEEeecCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEecCCceee-eeEEeccCCCe
Q psy3640         424 MIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYS--GSKLATASSDQTANLWTVGGAVEL-LQTFYGHSNEV  498 (616)
Q Consensus       424 ~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~  498 (616)
                      ++++|+.||.|++||+.++.  ....+..|...|.+++|+|+  +..+++++.||.|++||+...... ......+.   
T Consensus        69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~---  145 (753)
T 3jro_A           69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA---  145 (753)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCS---
T ss_pred             EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCC---
Confidence            99999999999999999986  77788889999999999999  999999999999999999876322 23333443   


Q ss_pred             eeEEEEEEcC-------------CCCEEEEEeCCCcEEEEecCCce---EEeEEeeccccCEEEEEEecC---CCEEEEE
Q psy3640         499 SKVLDIAFDY-------------SGSKLATASSDQTAKLWTVGGAV---ELLQTFYGHSNEVSKVSFHPT---GKLVLSG  559 (616)
Q Consensus       499 ~~i~~~~~s~-------------~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~h~~~v~~l~~spd---g~~l~s~  559 (616)
                      ..+.+++|+|             ++.++++|+.||.|++||+.+..   .....+.+|..+|++++|+|+   +++|++|
T Consensus       146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~  225 (753)
T 3jro_A          146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  225 (753)
T ss_dssp             SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence            4588899999             58999999999999999997642   566778899999999999999   8999999


Q ss_pred             ECCCcEEEecCCcCe-----eeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         560 SQDTTCRLWSTESGE-----CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       560 s~dg~i~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      +.||.|++||+.+++     .+.....|.+.|++++|+|++++|++++.||.|++|++.+
T Consensus       226 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             ESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             ecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            999999999999874     3444456889999999999999999999999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.98  E-value=5.2e-32  Score=275.97  Aligned_cols=251  Identities=13%  Similarity=0.117  Sum_probs=163.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCcee-----EEeecCCcCEEEEEEcC--------CCCEEEEEECCCcEEEEeccccc
Q psy3640         319 SPDQSTFCSCSMDHTARIFNTNSGQEM-----HTLKAHTGPVISLQFSS--------DRNMLITGSFDSSIVVWDIQYQF  385 (616)
Q Consensus       319 ~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~v~~l~~~~--------~~~~l~~g~~dg~i~iwd~~~~~  385 (616)
                      .+++.++++++.|++|++||.++++..     ..+.+|.+.|.+++|+|        ++++|++++.|++|++||++   
T Consensus        98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~---  174 (393)
T 4gq1_A           98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT---  174 (393)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE---
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC---
Confidence            344455566666666666666555432     23568999999999998        78999999999999999997   


Q ss_pred             CCcccccccccccCCcceEEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCE----EEEEE
Q psy3640         386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV----LDIAF  460 (616)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v----~~l~~  460 (616)
                                   ...+......|...+.+++|+|++. +|++++.||.|++||+++++.......+....    .....
T Consensus       175 -------------~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~  241 (393)
T 4gq1_A          175 -------------DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT  241 (393)
T ss_dssp             -------------TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred             -------------CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence                         6677788888999999999999874 89999999999999999887655443322211    11111


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEc-CCCCEEEEEeCCCcEEEEecCCceEEeEEeec
Q psy3640         461 DYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD-YSGSKLATASSDQTAKLWTVGGAVELLQTFYG  539 (616)
Q Consensus       461 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  539 (616)
                      .+......                      ..++.   ..+.++.|+ ++++.+++++.|+.+++||+... .....+..
T Consensus       242 ~~~~~~~~----------------------~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~  295 (393)
T 4gq1_A          242 LPLVNTCH----------------------SSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISD  295 (393)
T ss_dssp             GGGC----------------------------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC------------
T ss_pred             ccceeeee----------------------ccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEee
Confidence            11110000                      01111   123345554 67777777777888888877653 33333334


Q ss_pred             cccCEEEEE------------------Eec--CCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEE
Q psy3640         540 HSNEVSKVS------------------FHP--TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTII  599 (616)
Q Consensus       540 h~~~v~~l~------------------~sp--dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~  599 (616)
                      |...+..+.                  |+|  ++.++++|+.||.|++||+.+++++..+.+|..+|.+++|+|||++||
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA  375 (393)
T 4gq1_A          296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLA  375 (393)
T ss_dssp             --------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEE
T ss_pred             ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEE
Confidence            443333333                  333  334677888999999999999999998899999999999999999999


Q ss_pred             EeeCCCcEEEccc
Q psy3640         600 TASKDNTCCIWRS  612 (616)
Q Consensus       600 t~s~Dg~i~vW~~  612 (616)
                      +++.|| +.+|++
T Consensus       376 ~as~~G-v~lvrL  387 (393)
T 4gq1_A          376 IATEGS-VLLTRL  387 (393)
T ss_dssp             EEESSE-EEEEEE
T ss_pred             EEeCCC-eEEEEE
Confidence            999877 555654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2e-29  Score=241.19  Aligned_cols=294  Identities=11%  Similarity=0.097  Sum_probs=206.6

Q ss_pred             hhhheecccCCc----ceEEEEECCCCC---EEEEEECCCcEEEEECCCC---cEEEEEeccCCcEEEEEEcCCCC-EEE
Q psy3640         177 YEKFKMLKSHLL----PLTNITFDKFGT---RCLTGSYDRTCKLWDIKSG---HEICTYRGHQNVVYAVAFSEPYG-CLT  245 (616)
Q Consensus       177 ~~~~~~l~~h~~----~i~~v~~s~~g~---~lasgs~dg~i~iwd~~~~---~~~~~~~~h~~~I~~l~fs~~~~-lls  245 (616)
                      .+++..|+.-.+    .+.++-|-..|-   .+++++. ..|++|+..++   +.++++.+|+.+|..+.|.||.. ++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (356)
T 2w18_A           25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC  103 (356)
T ss_dssp             EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred             eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence            344455554333    356666655443   5566665 48999999999   89999999999999999999865 331


Q ss_pred             EECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCC----CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCC
Q psy3640         246 GSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY----GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPD  321 (616)
Q Consensus       246 ~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  321 (616)
                      .                 .--+-+...|.+++|+ |+    +..+++++.+  +++|++.                   +
T Consensus       104 ~-----------------~~~~~~~~~v~sla~s-pd~~~~~~~l~s~g~~--~~v~~l~-------------------~  144 (356)
T 2w18_A          104 V-----------------ALGNLEIREIRALFCS-SDDESEKQVLLKSGNI--KAVLGLT-------------------K  144 (356)
T ss_dssp             E-----------------EECSSSEEEEEEECC-------CCEEEEEEEEE--EEEEEET-------------------T
T ss_pred             e-----------------eeccccccceEEEEEC-CCccccccEEEeCCCe--EEEEecC-------------------C
Confidence            1                 1112355789999999 78    8889998844  7788754                   3


Q ss_pred             CCEEEEEe--CCCcEEEEEC-CCCceeEEeecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640         322 QSTFCSCS--MDHTARIFNT-NSGQEMHTLKAHTGPVISLQFSS---DRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       322 ~~~l~~~~--~dg~i~i~d~-~~~~~~~~~~~~~~~v~~l~~~~---~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      ++.+.+++  .|+.|++|++ .+++.+..+..|...+..++|++   ++..|++++.|++|++||+.             
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-------------  211 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-------------  211 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-------------
T ss_pred             CcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-------------
Confidence            33444433  5899999999 55888889999999999999999   77999999999999999998             


Q ss_pred             cccCCcceEEEecCcc---ceeEEEEccCCCEE------------EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640         396 YRASHKPIHILTGHSQ---EISNCLFNFSNSMI------------ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF  460 (616)
Q Consensus       396 ~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  460 (616)
                         +++.+..+.+|..   .+.+++|+|++.++            ++|+.|+++++||..+++.+..+.        +++
T Consensus       212 ---TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~--------~~~  280 (356)
T 2w18_A          212 ---TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVML--------YCL  280 (356)
T ss_dssp             ---TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEE--------ECC
T ss_pred             ---CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEE--------eec
Confidence               7788888876543   56677899999876            567788999999999988775331        111


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc
Q psy3640         461 DYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH  540 (616)
Q Consensus       461 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h  540 (616)
                       |+|..       +.                         +  +..+.++.++++++.|++|++||+.++ +++.++.+|
T Consensus       281 -p~Gh~-------~~-------------------------~--lsg~~sg~~lASgS~DgTIkIWDl~tG-k~l~tL~gH  324 (356)
T 2w18_A          281 -PPGQA-------GR-------------------------F--LEGDVKDHCAAAILTSGTIAIWDLLLG-QCTALLPPV  324 (356)
T ss_dssp             -CTTCC-------CC-------------------------E--EEEEEETTEEEEEETTSCEEEEETTTC-SEEEEECCC
T ss_pred             -cCCCc-------ce-------------------------e--EccccCCCEEEEEcCCCcEEEEECCCC-cEEEEecCC
Confidence             22210       00                         0  011112556667777777777777663 667778888


Q ss_pred             ccCEE-EEEEecCCCEEEEEECCCcEEEecC
Q psy3640         541 SNEVS-KVSFHPTGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       541 ~~~v~-~l~~spdg~~l~s~s~dg~i~iwd~  570 (616)
                      ...+. .++|||||++|++|+.|++|+|||+
T Consensus       325 ~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          325 SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             --CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            87655 6899999999999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=1.3e-28  Score=259.93  Aligned_cols=330  Identities=13%  Similarity=0.078  Sum_probs=258.1

Q ss_pred             EECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeC--CCCceEEEeeCCC
Q psy3640         194 TFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDI--KSGHEICTYRGHQ  270 (616)
Q Consensus       194 ~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~--~~~~~~~~~~~h~  270 (616)
                      +|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+|+++++ +++.|++|++||+  .+++.+..+. +.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence            4899999999999999999999999999999984433 8899999999965 8899999999999  8999888888 45


Q ss_pred             CcEEEEEEeCC----CCCEEEEEEC-CCeEEEEeCCCcceeEEeeec--------------eeeEEEcCCCCEE-EEEeC
Q psy3640         271 NVVYAVAFSEP----YGDKILTGSF-DKTLKLWASAKEECIQTYRGH--------------SAEVTFSPDQSTF-CSCSM  330 (616)
Q Consensus       271 ~~V~~l~~~~~----~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~l-~~~~~  330 (616)
                      ..+..++|+ |    +++++++++. +++|.+||..+++++..+..+              ...+.++|++..+ ++...
T Consensus       222 ~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          222 IEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             SEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            678999999 7    8999988884 899999999999998887642              2456899977654 56667


Q ss_pred             CCcEEEEECCCCceeE--EeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640         331 DHTARIFNTNSGQEMH--TLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT  407 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (616)
                      ++.|.+||..+.+.+.  .+. +...+..++|+|+|+++++++ .+++|.+||..                +.+.+..+.
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~----------------tg~l~~~i~  363 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK----------------DRRLSALVD  363 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT----------------TTEEEEEEE
T ss_pred             CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECC----------------CCeEEEeec
Confidence            8999999998876544  443 566678899999999877665 58899999997                555555554


Q ss_pred             c----CccceeEEEEccC-CCEEEEEe-CCCcEEEEeCCC-------CeEEEEeecCCCCEEEEEEcCCCCEEEEEeC--
Q psy3640         408 G----HSQEISNCLFNFS-NSMIASSS-LDGTAKLWDVRT-------MCCFYTLKNHEDEVLDIAFDYSGSKLATASS--  472 (616)
Q Consensus       408 ~----~~~~i~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--  472 (616)
                      .    |......+ ++|+ +..++++. .|++|.+||+.+       +++++++..+...+..++++|++++|++++.  
T Consensus       364 ~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~  442 (543)
T 1nir_A          364 VGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN  442 (543)
T ss_dssp             CSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTC
T ss_pred             cCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCC
Confidence            3    43333333 4676 55666665 579999999998       8999999999888899999999999999872  


Q ss_pred             -----CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEE
Q psy3640         473 -----DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV  547 (616)
Q Consensus       473 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l  547 (616)
                           +++|.+||+.+.......+.                                  +.    ...-+..+...+..+
T Consensus       443 ~~~~~~~~v~v~d~~~~~~~~~~~~----------------------------------v~----~~~~~~~~~~~~~~~  484 (543)
T 1nir_A          443 PDARISQSVAVFDLKNLDAKYQVLP----------------------------------IA----EWADLGEGAKRVVQP  484 (543)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEEC----------------------------------HH----HHHCCCSSCCEEEEE
T ss_pred             CCcccCceEEEEECCCCCCCeEEee----------------------------------ch----hhcccCCCCCceEec
Confidence                 66899998876532111100                                  00    000023456778999


Q ss_pred             EEecCCCEEEEEE-----CCCcEEEecCCcCeeeeEeccC
Q psy3640         548 SFHPTGKLVLSGS-----QDTTCRLWSTESGECIQVLKAH  582 (616)
Q Consensus       548 ~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~h  582 (616)
                      +|+|+|+.|+++.     .|+.|.|||.++++++.+++.+
T Consensus       485 ~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          485 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             EECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             cCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCC
Confidence            9999999988763     4799999999999999998854

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=9e-30  Score=259.39  Aligned_cols=286  Identities=12%  Similarity=0.072  Sum_probs=188.7

Q ss_pred             ecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEE-----EEeccCCcEEEEEEcC--------CCCE-EEEE
Q psy3640         182 MLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC-----TYRGHQNVVYAVAFSE--------PYGC-LTGS  247 (616)
Q Consensus       182 ~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~-----~~~~h~~~I~~l~fs~--------~~~l-ls~s  247 (616)
                      ....|...+....+++++.+||+|+.|++|+|||+.+++...     .+.+|.+.|.+++|+|        |+++ ++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s  163 (393)
T 4gq1_A           84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG  163 (393)
T ss_dssp             ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred             cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence            334566666777778888999999999999999999886543     3568999999999997        6664 5999


Q ss_pred             CCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEE
Q psy3640         248 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCS  327 (616)
Q Consensus       248 ~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~  327 (616)
                      .|++|+|||+.++.++..+.+|...|.+++|+|.+..+|++++.|++|++||+.+++.......+....     ......
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~-----~~~~~s  238 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK-----NPWLLT  238 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS-----CCCSEE
T ss_pred             CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc-----cceEEe
Confidence            999999999999998888888999999999995555689999999999999999887655443221110     000011


Q ss_pred             EeCCCcEEEEECCCCceeEEeecCCcCEEEEEEc-CCCCEEEEEECCCcEEEEecccccCCccccccc---ccccCCcce
Q psy3640         328 CSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS-SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES---TYRASHKPI  403 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~  403 (616)
                               ++...........+|...+.++.|. |+++.+++++.|+++++||+.............   .........
T Consensus       239 ---------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~  309 (393)
T 4gq1_A          239 ---------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV  309 (393)
T ss_dssp             ---------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE
T ss_pred             ---------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc
Confidence                     1111111122334688889999986 799999999999999999987432211110000   000011112


Q ss_pred             EEEecCccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         404 HILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       404 ~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      .....+...+..+.+.+. +.++++|+.||.|++||+.++.....+..|..+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          310 QGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             ccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            222223333333333333 34667788899999999999988888888999999999999999999998775 6666553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.97  E-value=9.5e-28  Score=253.36  Aligned_cols=320  Identities=11%  Similarity=0.072  Sum_probs=248.4

Q ss_pred             EcCCCCEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeC--CCcceeEEeeec-
Q psy3640         237 FSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWAS--AKEECIQTYRGH-  312 (616)
Q Consensus       237 fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~--~~~~~~~~~~~~-  312 (616)
                      |+|++.++ +++.|++|.+||..+++.+.++..+.. +..++|+ |+++++++++.|++|.+||+  .+++.+.++... 
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            66777744 778899999999999999999984433 8899999 89999999999999999999  888888877643 


Q ss_pred             -eeeEEEcC----CCCEEEEEeC-CCcEEEEECCCCceeEEeecC----------C-cCEEEEEEcCCCCE-EEEEECCC
Q psy3640         313 -SAEVTFSP----DQSTFCSCSM-DHTARIFNTNSGQEMHTLKAH----------T-GPVISLQFSSDRNM-LITGSFDS  374 (616)
Q Consensus       313 -~~~v~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~----------~-~~v~~l~~~~~~~~-l~~g~~dg  374 (616)
                       ...++|+|    +++++++++. +++|.+||..+++.+..+..+          . ..+.++.++|++.. +++...++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence             34578999    9999998884 899999999999998887642          2 37899999997665 55666789


Q ss_pred             cEEEEecccccCCcccccccccccCCcceE-EEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeec--
Q psy3640         375 SIVVWDIQYQFGTRNAYAESTYRASHKPIH-ILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKN--  450 (616)
Q Consensus       375 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--  450 (616)
                      .|.+||...                ...+. ....+...+..+.|+|+++++++++ .+++|.+||+.+++++..+..  
T Consensus       303 ~i~vvd~~~----------------~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~  366 (543)
T 1nir_A          303 KVLLVNYKD----------------IDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK  366 (543)
T ss_dssp             EEEEEECTT----------------SSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             eEEEEEecC----------------CCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence            999999873                22111 1223556678899999999877655 578999999999999888774  


Q ss_pred             --CCCCEEEEEEcCC-CCEEEEEe-CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640         451 --HEDEVLDIAFDYS-GSKLATAS-SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT  526 (616)
Q Consensus       451 --~~~~v~~l~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  526 (616)
                        |.+....+ ++|+ +..++++. .|++|.+|+..+..        +..                              
T Consensus       367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------~~~------------------------------  407 (543)
T 1nir_A          367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKN--------HPQ------------------------------  407 (543)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT--------CTT------------------------------
T ss_pred             CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCC--------Cch------------------------------
Confidence              44333333 4566 55555554 56788888876520        000                              


Q ss_pred             cCCceEEeEEeeccccCEEEEEEecCCCEEEEEE-------CCCcEEEecCCcCeee-eEe--------ccCcccEEEEE
Q psy3640         527 VGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-------QDTTCRLWSTESGECI-QVL--------KAHEDDVFSCG  590 (616)
Q Consensus       527 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-------~dg~i~iwd~~~~~~~-~~~--------~~h~~~V~~l~  590 (616)
                        ...+.++.+..|.+.+..++++|+|++|++++       .+++|.+||+.+++.. ..+        ..+...+..+.
T Consensus       408 --~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  485 (543)
T 1nir_A          408 --YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE  485 (543)
T ss_dssp             --TBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred             --hcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence              01356777888888889999999999999987       2679999999999877 444        35667899999


Q ss_pred             EeeCCCEEEEee-----CCCcEEEcccCCC
Q psy3640         591 FNYNGDTIITAS-----KDNTCCIWRSMNR  615 (616)
Q Consensus       591 ~s~~~~~l~t~s-----~Dg~i~vW~~~~~  615 (616)
                      |+|+|+.|+++.     .|+.|.|||.++.
T Consensus       486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             ECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence            999999988762     4799999999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=6.4e-27  Score=259.26  Aligned_cols=319  Identities=14%  Similarity=0.072  Sum_probs=245.8

Q ss_pred             CcceEEEEECCCCCEEEEEEC-CC-----cEEEEECCCCcEEEEEeccCC------------------------cEEEEE
Q psy3640         187 LLPLTNITFDKFGTRCLTGSY-DR-----TCKLWDIKSGHEICTYRGHQN------------------------VVYAVA  236 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasgs~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~I~~l~  236 (616)
                      ...+.+++|||||++|++++. |+     +|.+||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567999999999999999998 88     899999999988877765543                        388999


Q ss_pred             EcCCCCEEEEECCCcEEEEeCCCCc--eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--
Q psy3640         237 FSEPYGCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--  312 (616)
Q Consensus       237 fs~~~~lls~s~d~~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--  312 (616)
                      |+||++.++.+.++.|++||+.++.  ....+..|...+..++|+ |++++|++++. +.|++||+.+++.......+  
T Consensus       116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S-PDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLS-PKGGFVSFIRG-RNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC-TTSSEEEEEET-TEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCC-CCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcc
Confidence            9999997755445999999999883  445677788899999999 89999999885 69999999988766544332  


Q ss_pred             -----------------eeeEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-
Q psy3640         313 -----------------SAEVTFSPDQSTFCSCSMDH---------------------------------TARIFNTNS-  341 (616)
Q Consensus       313 -----------------~~~v~~~~~~~~l~~~~~dg---------------------------------~i~i~d~~~-  341 (616)
                                       ...++|+||++.|++++.|+                                 .|.+||+.+ 
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~  273 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ  273 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence                             25579999999999987765                                 788999988 


Q ss_pred             CceeEEee--cCCcCEEEEEEcCCCCEEEEEEC-----CCcEEEEecccccCCcccccccccccCCcceEEEecCcc---
Q psy3640         342 GQEMHTLK--AHTGPVISLQFSSDRNMLITGSF-----DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ---  411 (616)
Q Consensus       342 ~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  411 (616)
                      ++......  .|...+..++| |||+.|++++.     +..|++||+.                .......+..+..   
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~----------------~g~~~~~~~~~~~~~~  336 (741)
T 2ecf_A          274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLA----------------SNQQRVLAHETSPTWV  336 (741)
T ss_dssp             CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETT----------------TCCEEEEEEEECSSCC
T ss_pred             CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECC----------------CCceEEEEEcCCCCcC
Confidence            77655443  37788999999 99999997764     5679999987                4444444444332   


Q ss_pred             -ceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCEEEE-EEcCCCCEEEEEe-CCC--cEEEEecCCce
Q psy3640         412 -EISNCLFNFSNSMIASSSLDGTAKLWDVR-TMCCFYTLKNHEDEVLDI-AFDYSGSKLATAS-SDQ--TANLWTVGGAV  485 (616)
Q Consensus       412 -~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~~~~~~~l~~~~-~dg--~i~iwd~~~~~  485 (616)
                       .+..++|+|+++++++++.+|.+++|.+. .+. ...+..+...+..+ .|+|+++.++..+ .++  .+++|++....
T Consensus       337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g  415 (741)
T 2ecf_A          337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG  415 (741)
T ss_dssp             CCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred             CcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence             45688999999999999999987777654 344 67777788888887 5999999876544 444  89999886422


Q ss_pred             eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC----CcEEEEecCC
Q psy3640         486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD----QTAKLWTVGG  529 (616)
Q Consensus       486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~  529 (616)
                      .....+..    ...+..++|+|++++++....+    ..+.+++..+
T Consensus       416 ~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          416 GQPQRLSK----APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             CCCEECCC----SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             CCeeeccc----CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence            22233322    2235688999999998877554    4688888755

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=3.6e-27  Score=241.55  Aligned_cols=276  Identities=15%  Similarity=0.126  Sum_probs=214.6

Q ss_pred             CCcceEEEEECCCCC-EEEEEE----CCC----cEEEEEC--CCCcEE--EEEeccCCcEEEEEEcC-------------
Q psy3640         186 HLLPLTNITFDKFGT-RCLTGS----YDR----TCKLWDI--KSGHEI--CTYRGHQNVVYAVAFSE-------------  239 (616)
Q Consensus       186 h~~~i~~v~~s~~g~-~lasgs----~dg----~i~iwd~--~~~~~~--~~~~~h~~~I~~l~fs~-------------  239 (616)
                      +...+...+|++.|. ++++|+    .+|    +|++||+  .+++.+  ..+.+|...+..+++++             
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            345677788888875 555776    467    8999999  999887  45889988888887764             


Q ss_pred             --CCCEEEEECC------CcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCC---eEEEEeCCCcceeEE
Q psy3640         240 --PYGCLTGSYD------RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK---TLKLWASAKEECIQT  308 (616)
Q Consensus       240 --~~~lls~s~d------~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~  308 (616)
                        +.+++.++.+      ++|++||+.. .....+.+|...+.+++|+ |+++.|++++.++   .|++||+.+++....
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l  218 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQV  218 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence              4456655543      7999999974 4557778899999999999 8999999999885   999999999877543


Q ss_pred             e--eeceeeEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-CC--cEEEEe
Q psy3640         309 Y--RGHSAEVTFSPDQSTFC-SCSMDHT--ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-DS--SIVVWD  380 (616)
Q Consensus       309 ~--~~~~~~v~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-dg--~i~iwd  380 (616)
                      .  .+....++|+|+++.|+ +++.++.  |++||+.+++. ..+..|...+.+++|+|+|+.|++++. ++  .|.+||
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            2  22345678999999888 5665554  99999998775 567778889999999999999998886 45  566777


Q ss_pred             cccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC---CcEEEEeCCCCeEEEEeecCCCCEEE
Q psy3640         381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD---GTAKLWDVRTMCCFYTLKNHEDEVLD  457 (616)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~  457 (616)
                      +.                ... ...+..+...+..++|+|++++|++++.+   ..|++||+.+++.. .+..+. .+.+
T Consensus       298 ~~----------------~~~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~  358 (415)
T 2hqs_A          298 IN----------------GGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDET  358 (415)
T ss_dssp             TT----------------SSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEE
T ss_pred             CC----------------CCC-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCC
Confidence            75                222 33445566778899999999999988864   58999999988764 454444 7889


Q ss_pred             EEEcCCCCEEEEEeCCC---cEEEEecCC
Q psy3640         458 IAFDYSGSKLATASSDQ---TANLWTVGG  483 (616)
Q Consensus       458 l~~~~~~~~l~~~~~dg---~i~iwd~~~  483 (616)
                      ++|+|+|+.|++++.++   .|++||+.+
T Consensus       359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          359 PSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence            99999999888887766   577777654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.3e-26  Score=235.61  Aligned_cols=297  Identities=16%  Similarity=0.148  Sum_probs=230.8

Q ss_pred             CcEEEEEEeCCCCCEEEEEE----CCC----eEEEEeC--CCccee--EEeeeceeeE---EEcC--------------C
Q psy3640         271 NVVYAVAFSEPYGDKILTGS----FDK----TLKLWAS--AKEECI--QTYRGHSAEV---TFSP--------------D  321 (616)
Q Consensus       271 ~~V~~l~~~~~~~~~l~s~s----~dg----~i~iwd~--~~~~~~--~~~~~~~~~v---~~~~--------------~  321 (616)
                      ..+....|.+...+.+++|+    .+|    .+++||+  .+++.+  ..+.++...+   ++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            35666777755566777886    467    8999999  888877  4466665443   2222              2


Q ss_pred             CCEEEEEeCC------CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC---cEEEEecccccCCccccc
Q psy3640         322 QSTFCSCSMD------HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS---SIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       322 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~  392 (616)
                      +..++.++.+      +.|++||+. +.....+..|...+.+++|+|+|+.|++++.++   .|++||+.          
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~----------  211 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA----------  211 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC----------
Confidence            6666666654      799999997 455677788999999999999999999999885   99999996          


Q ss_pred             ccccccCCcceEEEecCccceeEEEEccCCCEEE-EEeCCCc--EEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEE
Q psy3640         393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIA-SSSLDGT--AKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT  469 (616)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  469 (616)
                            .... ..+..+...+.+++|+|+++.|+ +++.++.  |++||+.+++. ..+..+...+.+++|+|+|+.|++
T Consensus       212 ------tg~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~  283 (415)
T 2hqs_A          212 ------NGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAF  283 (415)
T ss_dssp             ------TCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEE
T ss_pred             ------CCcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEE
Confidence                  3333 35667788899999999999887 5665554  99999998875 566778889999999999999998


Q ss_pred             EeC-CC--cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEecCCceEEeEEeeccccC
Q psy3640         470 ASS-DQ--TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD---QTAKLWTVGGAVELLQTFYGHSNE  543 (616)
Q Consensus       470 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~h~~~  543 (616)
                      ++. ++  .|.+||+.++..  ..+..+   ...+..++|+|+|++|++++.+   ..|.+||+.++..  ..+..|. .
T Consensus       284 ~s~~~g~~~i~~~d~~~~~~--~~l~~~---~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~  355 (415)
T 2hqs_A          284 TSDQAGRPQVYKVNINGGAP--QRITWE---GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-L  355 (415)
T ss_dssp             EECTTSSCEEEEEETTSSCC--EECCCS---SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-S
T ss_pred             EECCCCCcEEEEEECCCCCE--EEEecC---CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-C
Confidence            876 45  577778876532  222222   2357789999999999988864   5899999987533  3455554 8


Q ss_pred             EEEEEEecCCCEEEEEECCC---cEEEecCCcCeeeeEeccCcccEEEEEEeeCC
Q psy3640         544 VSKVSFHPTGKLVLSGSQDT---TCRLWSTESGECIQVLKAHEDDVFSCGFNYNG  595 (616)
Q Consensus       544 v~~l~~spdg~~l~s~s~dg---~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~  595 (616)
                      +.+++|+|+|++|++++.++   .|++||+. ++....+.+|.+.|.+++|+|..
T Consensus       356 ~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          356 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             cCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence            99999999999999988877   79999986 66678899999999999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.96  E-value=1.2e-26  Score=256.99  Aligned_cols=322  Identities=11%  Similarity=0.084  Sum_probs=244.1

Q ss_pred             CCcEEEEEEeCCCCCEEEEEEC-CC-----eEEEEeCCCcceeEEeeec---------------------------eeeE
Q psy3640         270 QNVVYAVAFSEPYGDKILTGSF-DK-----TLKLWASAKEECIQTYRGH---------------------------SAEV  316 (616)
Q Consensus       270 ~~~V~~l~~~~~~~~~l~s~s~-dg-----~i~iwd~~~~~~~~~~~~~---------------------------~~~v  316 (616)
                      ...+.+++|+ |+|++|++++. |+     .|++||+.+++....+..+                           ...+
T Consensus        36 ~~~~~~~~~S-pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVA-PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEEC-TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEe-cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            4578999999 89999999998 88     9999999999877666543                           3456


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640         317 TFSPDQSTFCSCSMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       317 ~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                      +|+||+++|++++. +.|.+||+.++.  ....+..|...+.+++|+|||++|++++ ++.|++||+..           
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~-----------  181 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLAS-----------  181 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTT-----------
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCC-----------
Confidence            89999999999886 999999999873  4455667888899999999999999988 56999999863           


Q ss_pred             ccccCCcceEEEecCcc----------------ceeEEEEccCCCEEEEEeCCC--------------------------
Q psy3640         395 TYRASHKPIHILTGHSQ----------------EISNCLFNFSNSMIASSSLDG--------------------------  432 (616)
Q Consensus       395 ~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~dg--------------------------  432 (616)
                           .........+..                .+..++|+|+|+.|++++.|+                          
T Consensus       182 -----g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~  256 (741)
T 2ecf_A          182 -----GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA  256 (741)
T ss_dssp             -----TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred             -----CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence                 222221111211                247899999999999988765                          


Q ss_pred             -------cEEEEeCCC-CeEEEEee--cCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEecCCceeeeeEEeccCC-
Q psy3640         433 -------TAKLWDVRT-MCCFYTLK--NHEDEVLDIAFDYSGSKLATASS-----DQTANLWTVGGAVELLQTFYGHSN-  496 (616)
Q Consensus       433 -------~i~iwd~~~-~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~-  496 (616)
                             .|++||+.+ ++......  .+...+.+++| |+|+.|++++.     +..|.+||+.++... .....+.. 
T Consensus       257 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~  334 (741)
T 2ecf_A          257 GDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPT  334 (741)
T ss_dssp             TSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSS
T ss_pred             CCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCC
Confidence                   789999988 77554433  36678999999 99999997764     567999999876433 22222221 


Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEE-EEecCCCEEEEE-ECCC--cEEEecCCc
Q psy3640         497 EVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV-SFHPTGKLVLSG-SQDT--TCRLWSTES  572 (616)
Q Consensus       497 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~-s~dg--~i~iwd~~~  572 (616)
                      ....+..++|+|||+++++++.+|.+.+|.++.... ...+..|...+..+ .|+|+|+.|+.. +.++  .++||++..
T Consensus       335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            111234679999999999999999888887753233 66777888889887 599999977654 4455  899999874


Q ss_pred             -CeeeeEeccCcccEEEEEEeeCCCEEEEeeCC----CcEEEcccCC
Q psy3640         573 -GECIQVLKAHEDDVFSCGFNYNGDTIITASKD----NTCCIWRSMN  614 (616)
Q Consensus       573 -~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D----g~i~vW~~~~  614 (616)
                       +.....+.. ...+.+++|+|||++|+....+    +.+.+|+...
T Consensus       414 ~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~  459 (741)
T 2ecf_A          414 QGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG  459 (741)
T ss_dssp             TCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence             666667765 5668999999999988876544    4678887643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.95  E-value=1.4e-25  Score=247.13  Aligned_cols=312  Identities=15%  Similarity=0.178  Sum_probs=222.8

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCcEE-EEEeccC-----------------CcEEEEEEcCCCCEEEEECCCc
Q psy3640         190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI-CTYRGHQ-----------------NVVYAVAFSEPYGCLTGSYDRT  251 (616)
Q Consensus       190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~I~~l~fs~~~~lls~s~d~~  251 (616)
                      +..+.|.  |+.+++++.++ | +||+.+++.+ ..+..|.                 ..|.+++|+|| ..+..+.++.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~~  102 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQGG  102 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETTE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECCE
Confidence            4446777  77788888888 8 9999999883 4444333                 56999999999 6554456799


Q ss_pred             EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCC-----cceeEEeeec--------------
Q psy3640         252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK-----EECIQTYRGH--------------  312 (616)
Q Consensus       252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~--------------  312 (616)
                      |++||+.+++... +..+...+.+++|+ |+++.|+++ .++.|++|++.+     ++.......+              
T Consensus       103 i~~~d~~~~~~~~-l~~~~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee  179 (706)
T 2z3z_A          103 LVGFDMLARKVTY-LFDTNEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE  179 (706)
T ss_dssp             EEEEETTTTEEEE-EECCTTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred             EEEEECCCCceEE-ccCCcccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence            9999999987654 44567788999999 899999985 679999999998     7665433322              


Q ss_pred             ---eeeEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceeEEee--cCCcC
Q psy3640         313 ---SAEVTFSPDQSTFCSCS---------------------------------MDHTARIFNTNSGQEMHTLK--AHTGP  354 (616)
Q Consensus       313 ---~~~v~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~~~~~~~--~~~~~  354 (616)
                         ...++|+||+++|++++                                 .+..|.+||+.+++......  .|...
T Consensus       180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  259 (706)
T 2z3z_A          180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF  259 (706)
T ss_dssp             TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred             cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence               25679999999999987                                 44679999999887654432  46677


Q ss_pred             EEEEEEcCCCCEEEEEECCC-----cEEEEecccccCCcccccccccccCCcceEEEe--cCcc---ceeEEEEcc--CC
Q psy3640         355 VISLQFSSDRNMLITGSFDS-----SIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQ---EISNCLFNF--SN  422 (616)
Q Consensus       355 v~~l~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~i~~~~~~~--~~  422 (616)
                      +.+++|+|||+.|++++.++     .|++||+.                .......+.  .+..   .+..++|+|  ++
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg  323 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAE----------------TGRFVRTLFVETDKHYVEPLHPLTFLPGSNN  323 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETT----------------TCCEEEEEEEEECSSCCCCCSCCEECTTCSS
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC----------------CCceeeEEEEccCCCeECccCCceeecCCCC
Confidence            99999999999999988775     89999986                331222221  1221   246789999  99


Q ss_pred             CEEEEEeCCCcEEEEeCC-CCeEEEEeecCCCCEEE-EEEcCCCCEEEEEeCCC-----cEEEEecCCceeeeeEEeccC
Q psy3640         423 SMIASSSLDGTAKLWDVR-TMCCFYTLKNHEDEVLD-IAFDYSGSKLATASSDQ-----TANLWTVGGAVELLQTFYGHS  495 (616)
Q Consensus       423 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~  495 (616)
                      +++++++.++.+++|++. ++..+..+..+...+.+ ++|+|+++.|+.++.+.     .|..|+..++           
T Consensus       324 ~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~-----------  392 (706)
T 2z3z_A          324 QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG-----------  392 (706)
T ss_dssp             EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC-----------
T ss_pred             EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC-----------
Confidence            999999999999999876 56667777777777876 78999988776665442     3333343321           


Q ss_pred             CCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECC----CcEEEecCC
Q psy3640         496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD----TTCRLWSTE  571 (616)
Q Consensus       496 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d----g~i~iwd~~  571 (616)
                                                         .  ...+ .|...+..++|+|||++++.+..+    +.|++||+.
T Consensus       393 -----------------------------------~--~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~  434 (706)
T 2z3z_A          393 -----------------------------------K--TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG  434 (706)
T ss_dssp             -----------------------------------C--CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred             -----------------------------------C--ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence                                               1  1111 245567888888888887766433    458889888


Q ss_pred             cCe
Q psy3640         572 SGE  574 (616)
Q Consensus       572 ~~~  574 (616)
                      +++
T Consensus       435 ~~~  437 (706)
T 2z3z_A          435 KGS  437 (706)
T ss_dssp             SCE
T ss_pred             CCe
Confidence            776

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=2e-26  Score=254.62  Aligned_cols=345  Identities=12%  Similarity=0.060  Sum_probs=245.4

Q ss_pred             cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCC---cEEEEEEeCCCCCEEEEEECC---------CeEEEE
Q psy3640         231 VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQN---VVYAVAFSEPYGDKILTGSFD---------KTLKLW  298 (616)
Q Consensus       231 ~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~d---------g~i~iw  298 (616)
                      .+.+++|+||+++++.+.||+|++||+.+++....+..|..   .|.+++|+ |++++|++++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEEC-CCCCEEEEEecCccceeecceeeEEEE
Confidence            46788999999988668999999999999998888887765   49999999 899999999875         788899


Q ss_pred             eCCCcceeEEee---ec---eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCE-----------------
Q psy3640         299 ASAKEECIQTYR---GH---SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV-----------------  355 (616)
Q Consensus       299 d~~~~~~~~~~~---~~---~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-----------------  355 (616)
                      |+.+++. ..+.   ++   ...++|+|||+.++.++. +.|++||+.+++.......+...+                 
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            9999876 3332   22   345689999999999886 789999999888776655544333                 


Q ss_pred             -EEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCc
Q psy3640         356 -ISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGT  433 (616)
Q Consensus       356 -~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  433 (616)
                       .+++|+|||+.|++++.+ +.+.+|++....              .       .+...+..+.|.++|..    ..+..
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~--------------~-------~~~~~~~~~~~~~~G~~----~~~~~  229 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYT--------------G-------SIYPTVKPYHYPKAGSE----NPSIS  229 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCS--------------S-------SSSCCCEEEECCBTTSC----CCEEE
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccC--------------C-------cCCCcceeccCCCCCCC----CCeeE
Confidence             789999999999988765 467788764211              0       02234667777777652    33458


Q ss_pred             EEEEeCCCCeEEEEeecC------CCCEEEEEEcCCCCEEEEEeC----CCcEEEEecCCceeeeeEEeccCCCeee-EE
Q psy3640         434 AKLWDVRTMCCFYTLKNH------EDEVLDIAFDYSGSKLATASS----DQTANLWTVGGAVELLQTFYGHSNEVSK-VL  502 (616)
Q Consensus       434 i~iwd~~~~~~~~~~~~~------~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-i~  502 (616)
                      |++||+.+++....+..+      ...+.+++|+|||+++++...    +..|.+||+.++.........+...... ..
T Consensus       230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  309 (723)
T 1xfd_A          230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE  309 (723)
T ss_dssp             EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred             EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence            999999988765666544      567899999999998877653    3579999998764322221211111110 12


Q ss_pred             EEEEcCCCCEEEE--EeCCC------cEEEEe-cCCceE-EeEEeeccccCEEE-EEEecCCCEEEEEECC---CcEEEe
Q psy3640         503 DIAFDYSGSKLAT--ASSDQ------TAKLWT-VGGAVE-LLQTFYGHSNEVSK-VSFHPTGKLVLSGSQD---TTCRLW  568 (616)
Q Consensus       503 ~~~~s~~~~~l~~--~~~dg------~i~vwd-~~~~~~-~~~~~~~h~~~v~~-l~~spdg~~l~s~s~d---g~i~iw  568 (616)
                      .++|+|||+.|+.  +..++      .|.+|| ..++.. ....+..+...+.. ++|+|||+.|+..+.+   +.+++|
T Consensus       310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence            5799999997775  44566      566677 333220 12333333444554 6999999999876655   789999


Q ss_pred             cCCcCe--eeeEecc---CcccEEEEEEeeCCCEEEEeeC
Q psy3640         569 STESGE--CIQVLKA---HEDDVFSCGFNYNGDTIITASK  603 (616)
Q Consensus       569 d~~~~~--~~~~~~~---h~~~V~~l~~s~~~~~l~t~s~  603 (616)
                      ++....  ....+..   |...+..++|+|||++|+....
T Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~  429 (723)
T 1xfd_A          390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (723)
T ss_dssp             EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             EEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence            986432  3444443   6677889999999998876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.94  E-value=1.3e-24  Score=239.23  Aligned_cols=321  Identities=13%  Similarity=0.092  Sum_probs=227.5

Q ss_pred             EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce--eEEeee-------------------ceeeEEEcCCCCEEEEEeCC
Q psy3640         273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC--IQTYRG-------------------HSAEVTFSPDQSTFCSCSMD  331 (616)
Q Consensus       273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~-------------------~~~~v~~~~~~~~l~~~~~d  331 (616)
                      +..+.|.   ++.+++++.++ | +||+.+++.  ...+..                   ....++|+|+ ..++.+. +
T Consensus        28 ~~~~~w~---g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~  100 (706)
T 2z3z_A           28 VVGLQWM---GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q  100 (706)
T ss_dssp             CTTCEEE---TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred             CCCCcCc---CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence            4456776   67788888888 8 999999987  333322                   2445789999 6666654 5


Q ss_pred             CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC--
Q psy3640         332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH--  409 (616)
Q Consensus       332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  409 (616)
                      +.+++||+.+++... +..+...+.+++|+|||+.|+++ .++.|++||+....+.           ..........+  
T Consensus       101 ~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~-----------~g~~~~~~~~~~~  167 (706)
T 2z3z_A          101 GGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG-----------MSRAIAVTIDGTE  167 (706)
T ss_dssp             TEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC-----------CCCCEESCSCCBT
T ss_pred             CEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc-----------CCCcEEeccCCCC
Confidence            999999999886544 44467778899999999999985 5899999999740000           02221111111  


Q ss_pred             ------------ccceeEEEEccCCCEEEEEe---------------------------------CCCcEEEEeCCCCeE
Q psy3640         410 ------------SQEISNCLFNFSNSMIASSS---------------------------------LDGTAKLWDVRTMCC  444 (616)
Q Consensus       410 ------------~~~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~  444 (616)
                                  ...+.++.|+|+|+.|++++                                 .+..|++||+.+++.
T Consensus       168 ~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          168 TLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             TEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             CeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence                        22358899999999999987                                 446799999999876


Q ss_pred             EEEee--cCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCceeeeeEEe-ccCCCeeeEEEEEEcC--CCCEEE
Q psy3640         445 FYTLK--NHEDEVLDIAFDYSGSKLATASSDQ-----TANLWTVGGAVELLQTFY-GHSNEVSKVLDIAFDY--SGSKLA  514 (616)
Q Consensus       445 ~~~~~--~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~s~--~~~~l~  514 (616)
                      .....  .+...+.+++|+|+|+.|++++.++     .|.+||+.++........ ........+..++|+|  +|++++
T Consensus       248 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~  327 (706)
T 2z3z_A          248 VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW  327 (706)
T ss_dssp             EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred             EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence            55442  4567799999999999999987775     899999987622222221 1111111234579999  999999


Q ss_pred             EEeCCCcEEEEecCCceEEeEEeeccccCEEE-EEEecCCCEEEEEECC-C----cEEEecCCcCeeeeEeccCcccEEE
Q psy3640         515 TASSDQTAKLWTVGGAVELLQTFYGHSNEVSK-VSFHPTGKLVLSGSQD-T----TCRLWSTESGECIQVLKAHEDDVFS  588 (616)
Q Consensus       515 ~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~s~d-g----~i~iwd~~~~~~~~~~~~h~~~V~~  588 (616)
                      ++..++.+++|.+.........+..|...+.. ++|+|+|+.|+.++.+ +    .|..||..+++ ...+. |...+.+
T Consensus       328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~  405 (706)
T 2z3z_A          328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHR  405 (706)
T ss_dssp             EECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEE
T ss_pred             EEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEE
Confidence            99999999999886333556667778888877 7999999988766554 3    57777777765 34443 6677999


Q ss_pred             EEEeeCCCEEEEeeCC----CcEEEcccCCC
Q psy3640         589 CGFNYNGDTIITASKD----NTCCIWRSMNR  615 (616)
Q Consensus       589 l~~s~~~~~l~t~s~D----g~i~vW~~~~~  615 (616)
                      ++|+|||++|+.++.+    +.+++|++.+.
T Consensus       406 ~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          406 TQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             EEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            9999999988876544    46999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.94  E-value=1.2e-25  Score=248.40  Aligned_cols=356  Identities=12%  Similarity=0.089  Sum_probs=249.5

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCC---cEEEEEEcCCCCEE-EEECC---------CcEEEE
Q psy3640         189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQN---VVYAVAFSEPYGCL-TGSYD---------RTCKLW  255 (616)
Q Consensus       189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~---~I~~l~fs~~~~ll-s~s~d---------~~I~iw  255 (616)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+.+|..   .|.+++||||++.+ +++.+         +.+.+|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4778999999998877 7899999999999998888887775   49999999999955 55543         789999


Q ss_pred             eCCCCceEEEee---CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece-------------------
Q psy3640         256 DIKSGHEICTYR---GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS-------------------  313 (616)
Q Consensus       256 d~~~~~~~~~~~---~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------------------  313 (616)
                      |+.+++. ..+.   +|...+..++|+ |+++.|++++. +.|++||+.+++.......+.                   
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~  173 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK  173 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred             ECCCCce-EeccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence            9999876 3343   344558899999 89999999887 799999999988766554322                   


Q ss_pred             --eeEEEcCCCCEEEEEeCC-CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640         314 --AEVTFSPDQSTFCSCSMD-HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA  390 (616)
Q Consensus       314 --~~v~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  390 (616)
                        ..++|+||++.|++++.+ +.+.+|++.....     .+...+..+.|.++|..    ..+..|++||+.        
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~--------  236 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE----NPSISLHVIGLN--------  236 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC----CCEEEEEEEESS--------
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCC-----cCCCcceeccCCCCCCC----CCeeEEEEEECC--------
Confidence              468999999999988755 4677777643221     13345788888887752    334589999986        


Q ss_pred             ccccccccCCcceEEEec------CccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCeEEEEeec-CCCCE----
Q psy3640         391 YAESTYRASHKPIHILTG------HSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMCCFYTLKN-HEDEV----  455 (616)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~-~~~~v----  455 (616)
                              .......+..      +...+..++|+|+|+++++....    ..|++||+.+++....+.. +...+    
T Consensus       237 --------~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  308 (723)
T 1xfd_A          237 --------GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQN  308 (723)
T ss_dssp             --------SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCC
T ss_pred             --------CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccC
Confidence                    3322233333      35678899999999988776533    5799999999887666543 33433    


Q ss_pred             EEEEEcCCCCEEEE--EeCCC------cEEEEe-cCCcee-eeeEEeccCCCeeeEE-EEEEcCCCCEEEEEeCC---Cc
Q psy3640         456 LDIAFDYSGSKLAT--ASSDQ------TANLWT-VGGAVE-LLQTFYGHSNEVSKVL-DIAFDYSGSKLATASSD---QT  521 (616)
Q Consensus       456 ~~l~~~~~~~~l~~--~~~dg------~i~iwd-~~~~~~-~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~d---g~  521 (616)
                      ..++|+|+|+.|+.  ...++      .+.+|| ..+... ....+....   ..+. .++|+|+|+.|+..+.+   +.
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~  385 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD---WDVTKILAYDEKGNKIYFLSTEDLPRR  385 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS---SCEEEEEEEETTTTEEEEEESSSCTTC
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC---eEEEeeeEEcCCCCEEEEEEcCCCCcc
Confidence            37899999997775  45666      466677 333220 012222111   1233 36899999999877665   78


Q ss_pred             EEEEecCCceE-EeEEeec---cccCEEEEEEecCCCEEEEEECC-C--cEEEecCCcCeee
Q psy3640         522 AKLWTVGGAVE-LLQTFYG---HSNEVSKVSFHPTGKLVLSGSQD-T--TCRLWSTESGECI  576 (616)
Q Consensus       522 i~vwd~~~~~~-~~~~~~~---h~~~v~~l~~spdg~~l~s~s~d-g--~i~iwd~~~~~~~  576 (616)
                      +++|++..... ....+..   |...+..++|+|||++|+..... .  ...+++..++..+
T Consensus       386 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~  447 (723)
T 1xfd_A          386 RQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM  447 (723)
T ss_dssp             CEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred             eEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEE
Confidence            99999864221 2223333   56778999999999988875432 2  2344455444433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.4e-23  Score=208.44  Aligned_cols=279  Identities=11%  Similarity=0.100  Sum_probs=203.3

Q ss_pred             EcCCCCE-EEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccc
Q psy3640         318 FSPDQST-FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       318 ~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      |.+++.. +++...++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||..             
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~-------------   70 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ-------------   70 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS-------------
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC-------------
Confidence            4455554 6677778999999999999888887666667 9999999997777666 8899999997             


Q ss_pred             cccCCcc-eEEEecCccceeEEEEccCCCEEEEEeCCC---cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEE-
Q psy3640         396 YRASHKP-IHILTGHSQEISNCLFNFSNSMIASSSLDG---TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA-  470 (616)
Q Consensus       396 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-  470 (616)
                         .... ...+..+..+..+++|+|++++++++..++   .|.+||+.+++.+..+.. .....+++|+|+|++++++ 
T Consensus        71 ---~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~  146 (331)
T 3u4y_A           71 ---LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILID  146 (331)
T ss_dssp             ---SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEE
T ss_pred             ---CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEe
Confidence               4444 555666666666699999999999655553   899999999998887764 4557999999999866555 


Q ss_pred             eCCCc-EEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceE--EeEEeeccccCEEE
Q psy3640         471 SSDQT-ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVE--LLQTFYGHSNEVSK  546 (616)
Q Consensus       471 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~  546 (616)
                      ..++. +.+|++......................++|+|+|+++++++ .++.|.+||+.++..  .+..+. ....+..
T Consensus       147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~  225 (331)
T 3u4y_A          147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGT  225 (331)
T ss_dssp             ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCC
T ss_pred             cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCce
Confidence            55588 999998754332211111001122357899999999766555 689999999986533  144444 3467789


Q ss_pred             EEEecCCCEEEEEE-CCCcEEEecCCcCee--eeEeccC----cc---cEEEEEEeeCCCEEEEeeC-CCcEEEcccCCC
Q psy3640         547 VSFHPTGKLVLSGS-QDTTCRLWSTESGEC--IQVLKAH----ED---DVFSCGFNYNGDTIITASK-DNTCCIWRSMNR  615 (616)
Q Consensus       547 l~~spdg~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~h----~~---~V~~l~~s~~~~~l~t~s~-Dg~i~vW~~~~~  615 (616)
                      ++|+|||++|++++ .++.|.+||+.+++.  +..+..+    ..   ....++|+|||++|++++. ++.|.+|++.++
T Consensus       226 ~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          226 IVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             EEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            99999999776654 578899999999887  4443322    22   2355899999998866555 579999999764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=3.2e-22  Score=200.41  Aligned_cols=268  Identities=8%  Similarity=0.055  Sum_probs=217.0

Q ss_pred             CCcceEEEEECCCCCEEEEEEC-------CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEe
Q psy3640         186 HLLPLTNITFDKFGTRCLTGSY-------DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWD  256 (616)
Q Consensus       186 h~~~i~~v~~s~~g~~lasgs~-------dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd  256 (616)
                      ....+..++|+|+|+++++++.       ++.|.+||..+++.+..+... ..+..++|+|+++ ++ +...++.|.+||
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            4557889999999999988874       468999999999988888753 4478899999998 43 555679999999


Q ss_pred             CCCCceEEEeeCCCCc---------EEEEEEeCCCCCEEEEEE--CCCeEEEEeCCCcceeEEeeec---eeeEEEcCCC
Q psy3640         257 IKSGHEICTYRGHQNV---------VYAVAFSEPYGDKILTGS--FDKTLKLWASAKEECIQTYRGH---SAEVTFSPDQ  322 (616)
Q Consensus       257 ~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~~  322 (616)
                      ..+++.+..+..+...         +.+++|+ ++++.+++++  .++.|.+||..+++....+..+   ...++++|++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            9999998888765432         7899999 7788777766  4789999999999988887622   4567999999


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEeec----CCcCEEEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccc
Q psy3640         323 STFCSCSMDHTARIFNTNSGQEMHTLKA----HTGPVISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYR  397 (616)
Q Consensus       323 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~  397 (616)
                      +.+++++.++.+.+||..+++....+..    +...+.+++|+|+++.+++++.+ +.|.+||..               
T Consensus       197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~---------------  261 (353)
T 3vgz_A          197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR---------------  261 (353)
T ss_dssp             TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT---------------
T ss_pred             CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC---------------
Confidence            9999999999999999999998887764    45568899999999987777654 899999987               


Q ss_pred             cCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640         398 ASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ  474 (616)
Q Consensus       398 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  474 (616)
                       .......+....  ...++|+|+++.++++. .++.|.+||..+++.+..+.. ...+.+++|+|+|++++++..++
T Consensus       262 -~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          262 -NGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             -TCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred             -CCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence             444444444333  25689999999666655 689999999999998888764 44789999999999887776654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.92  E-value=4.6e-24  Score=207.83  Aligned_cols=255  Identities=13%  Similarity=0.091  Sum_probs=194.3

Q ss_pred             EeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccC-CcceEEE
Q psy3640         328 CSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS-HKPIHIL  406 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~  406 (616)
                      ++.++.|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.|++||+.                . .......
T Consensus        18 ~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~----------------~~~~~~~~~   79 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLA----------------GDPSPEKVD   79 (297)
T ss_dssp             CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESS----------------SCCSCEECC
T ss_pred             CCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCC----------------CCCCceEec
Confidence            456789999999988766 4455889999999999999999987 8899999997                3 3344444


Q ss_pred             ecC-ccceeEEEEccCCCEEEEEeC--CC--cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEe
Q psy3640         407 TGH-SQEISNCLFNFSNSMIASSSL--DG--TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLA-TASSDQTANLWT  480 (616)
Q Consensus       407 ~~~-~~~i~~~~~~~~~~~l~~~~~--dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~~~~dg~i~iwd  480 (616)
                      ..+ ...+.+++|+|+++.+++++.  ++  .|..++..++. ...+.. ...+..++|+|+++.++ +++.++.+++|+
T Consensus        80 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           80 TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec-CCCccceEECCCCCEEEEEECCCCceEEEE
Confidence            444 367889999999999999983  33  45555555554 334443 33589999999999887 777899999998


Q ss_pred             cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640         481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG  559 (616)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~  559 (616)
                      +.........+..+.   ..+..++|+|+++++++++ .++.+.+|++.........+..|...+..++|+|+|++|+++
T Consensus       158 ~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  234 (297)
T 2ojh_A          158 MDIDSGVETRLTHGE---GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV  234 (297)
T ss_dssp             EETTTCCEEECCCSS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred             EECCCCcceEcccCC---CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence            643222223333322   3467899999999888776 589999999863334556677788889999999999999988


Q ss_pred             ECC-----------CcEEEecCCcCee--eeEeccCcccEEEEEEeeCCCEEEEeeCCC
Q psy3640         560 SQD-----------TTCRLWSTESGEC--IQVLKAHEDDVFSCGFNYNGDTIITASKDN  605 (616)
Q Consensus       560 s~d-----------g~i~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg  605 (616)
                      +.+           +.|.+||+.+++.  +..+.+|...+.+++|+|++++|++++.|.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            766           5699999998866  444557888899999999999999887764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=4.7e-23  Score=205.53  Aligned_cols=273  Identities=12%  Similarity=0.139  Sum_probs=192.7

Q ss_pred             EEEEeCCCcEEEEECC-CCc--eeEEeecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccccCC
Q psy3640         325 FCSCSMDHTARIFNTN-SGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       325 l~~~~~dg~i~i~d~~-~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                      +++++.++.|.+||+. +++  .+.. ..+...+.+++|+|+++++++++.+ +.|.+|++.....            ..
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~------------~~   74 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG------------AL   74 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC------------CE
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC------------ce
Confidence            3444678999999985 332  2333 3467788999999999999998887 9999999862100            11


Q ss_pred             cceEEEecCccceeEEEEccCCCEEEEEeC-CCcEEEEeC---CCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCc
Q psy3640         401 KPIHILTGHSQEISNCLFNFSNSMIASSSL-DGTAKLWDV---RTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS-SDQT  475 (616)
Q Consensus       401 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~---~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~  475 (616)
                      ..+..+..+. .+..++|+|+++.+++++. ++.|.+||+   .+.+....+. ....+.+++|+|+++++++++ .++.
T Consensus        75 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~  152 (343)
T 1ri6_A           75 TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDR  152 (343)
T ss_dssp             EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred             eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCE
Confidence            2233333333 7889999999998877765 788999999   4444455544 334688999999999888887 8999


Q ss_pred             EEEEecCCceeeeeEE--eccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCC--ce-EEeEEee----cc--ccC
Q psy3640         476 ANLWTVGGAVELLQTF--YGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGG--AV-ELLQTFY----GH--SNE  543 (616)
Q Consensus       476 i~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~--~~-~~~~~~~----~h--~~~  543 (616)
                      +.+|++..........  .........+..++|+|+++++++++ .++.+.+|++..  +. .......    ++  ...
T Consensus       153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  232 (343)
T 1ri6_A          153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  232 (343)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCC
Confidence            9999997622222111  11111123466799999999876665 789999999953  21 1122222    11  235


Q ss_pred             EEEEEEecCCCEEEEEE-CCCcEEEecCC----cCeeeeEeccCcccEEEEEEeeCCCEEEEee-CCCcEEEcccC
Q psy3640         544 VSKVSFHPTGKLVLSGS-QDTTCRLWSTE----SGECIQVLKAHEDDVFSCGFNYNGDTIITAS-KDNTCCIWRSM  613 (616)
Q Consensus       544 v~~l~~spdg~~l~s~s-~dg~i~iwd~~----~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s-~Dg~i~vW~~~  613 (616)
                      +..++|+|+|++|+++. .++.|.+||+.    +.+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|++.
T Consensus       233 ~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          233 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            77899999999887554 78999999998    3355566665555 88999999999888887 68999999664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.6e-22  Score=200.83  Aligned_cols=273  Identities=11%  Similarity=0.116  Sum_probs=204.0

Q ss_pred             EEECCCCCE-EEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEE-CCCcEEEEeCCCCce-EEEeeC
Q psy3640         193 ITFDKFGTR-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGS-YDRTCKLWDIKSGHE-ICTYRG  268 (616)
Q Consensus       193 v~~s~~g~~-lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s-~d~~I~iwd~~~~~~-~~~~~~  268 (616)
                      ..|++++++ +++++.++.|.+||..+++....+..+...+ .++|+|+++ +++++ .++.|.+||+.+++. ...+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            456666665 6677788999999999999988888777777 999999998 44444 489999999999998 777777


Q ss_pred             CCCcEEEEEEeCCCCCEEEEEECCC---eEEEEeCCCcceeEEeeec--eeeEEEcCCCCEEEEE-eCCCc-EEEEECCC
Q psy3640         269 HQNVVYAVAFSEPYGDKILTGSFDK---TLKLWASAKEECIQTYRGH--SAEVTFSPDQSTFCSC-SMDHT-ARIFNTNS  341 (616)
Q Consensus       269 h~~~V~~l~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~l~~~-~~dg~-i~i~d~~~  341 (616)
                      +..+..+++|+ |++++++++..++   .|.+||+.+++.+..+..+  ...++|+|++++++++ ..++. +.+|++..
T Consensus        82 ~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            77776669999 8899988555553   8999999999888776543  3567999999865554 55588 99999876


Q ss_pred             Ccee----EEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcc---eEEEecCccce
Q psy3640         342 GQEM----HTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKP---IHILTGHSQEI  413 (616)
Q Consensus       342 ~~~~----~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i  413 (616)
                      ...+    ............++|+|+|+++++++ .++.|.+||+.                ....   +..+.. ...+
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~----------------~~~~~~~~~~~~~-~~~~  223 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQ----------------NPENITLLNAVGT-NNLP  223 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECS----------------STTSCEEEEEEEC-SSCC
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECC----------------CCcccceeeeccC-CCCC
Confidence            4433    12223445679999999999665555 58899999987                3333   444443 3567


Q ss_pred             eEEEEccCCCEEEEEe-CCCcEEEEeCCCCeE--EEEeecC----CC---CEEEEEEcCCCCEEEEEeC-CCcEEEEecC
Q psy3640         414 SNCLFNFSNSMIASSS-LDGTAKLWDVRTMCC--FYTLKNH----ED---EVLDIAFDYSGSKLATASS-DQTANLWTVG  482 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~---~v~~l~~~~~~~~l~~~~~-dg~i~iwd~~  482 (616)
                      ..++|+|++++++++. .++.|.+||+.+++.  +..+...    ..   ....++|+|++++|++++. ++.+.+||+.
T Consensus       224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  303 (331)
T 3u4y_A          224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS  303 (331)
T ss_dssp             CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence            8899999999776665 467899999999876  4433322    21   2356899999998876655 5699999997


Q ss_pred             Cc
Q psy3640         483 GA  484 (616)
Q Consensus       483 ~~  484 (616)
                      ..
T Consensus       304 ~~  305 (331)
T 3u4y_A          304 GK  305 (331)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=4.1e-22  Score=199.70  Aligned_cols=272  Identities=11%  Similarity=0.099  Sum_probs=210.9

Q ss_pred             ceeeEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEeccc
Q psy3640         312 HSAEVTFSPDQSTFCSCSM-------DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQY  383 (616)
Q Consensus       312 ~~~~v~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~  383 (616)
                      ....++++|+++.+++++.       ++.|.+||..+++.+..+.. ...+..++|+|+++.++++ ..++.|.+||.. 
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-  119 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK-  119 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC-
Confidence            3456788999988887774       46799999999998888764 3446889999999966555 447999999987 


Q ss_pred             ccCCcccccccccccCCcceEEEecCcc---------ceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCC
Q psy3640         384 QFGTRNAYAESTYRASHKPIHILTGHSQ---------EISNCLFNFSNSMIASSS--LDGTAKLWDVRTMCCFYTLKNHE  452 (616)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~  452 (616)
                                     .......+..+..         .+..++++|+++.+++++  .++.|.+||..+++....+..+.
T Consensus       120 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  184 (353)
T 3vgz_A          120 ---------------TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG  184 (353)
T ss_dssp             ---------------TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred             ---------------CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence                           4444444444332         267899999999887776  47889999999999988887666


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-CcEEEEecCCce
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-QTAKLWTVGGAV  531 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~  531 (616)
                      ..+.+++|+|+++++++++.++.+.+||..+.................+..++++|+++++++++.+ +.|.+||..++.
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  264 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN  264 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred             CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence            6788999999999999999999999999988754433333233334457789999999988777664 999999998753


Q ss_pred             EEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCC
Q psy3640         532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKD  604 (616)
Q Consensus       532 ~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D  604 (616)
                       ....+....  ...++|+|+|+++++++ .++.|.+||..+++.+..+..+. .+.+++|+|+|++|+++..+
T Consensus       265 -~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          265 -ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred             -EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence             444443332  25699999999766665 68999999999999998887654 57899999999977776665

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.4e-22  Score=200.36  Aligned_cols=295  Identities=9%  Similarity=0.114  Sum_probs=204.2

Q ss_pred             EEEEEECCCeEEEEeCC-Cc--ceeEEee--eceeeEEEcCCCCEEEEEeCC-CcEEEEECC--CCc--eeEEeecCCcC
Q psy3640         285 KILTGSFDKTLKLWASA-KE--ECIQTYR--GHSAEVTFSPDQSTFCSCSMD-HTARIFNTN--SGQ--EMHTLKAHTGP  354 (616)
Q Consensus       285 ~l~s~s~dg~i~iwd~~-~~--~~~~~~~--~~~~~v~~~~~~~~l~~~~~d-g~i~i~d~~--~~~--~~~~~~~~~~~  354 (616)
                      .+++++.|+.|++|++. ++  +.+..+.  .....++|+|+++++++++.+ +.|.+|++.  +++  .+..+..+. .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence            34444779999999985 33  2333332  234467999999999988887 999999997  554  334444433 7


Q ss_pred             EEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCC
Q psy3640         355 VISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDG  432 (616)
Q Consensus       355 v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  432 (616)
                      +..++|+|+++++++++. ++.|.+||+....             ......... ....+..++|+|+++.+++++ .++
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~-------------~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~  151 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL-------------PVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQD  151 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTE-------------EEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCc-------------ccccccccc-CCCCceEEEECCCCCEEEEecCCCC
Confidence            889999999998877765 7889999984100             122233333 334578899999999888887 889


Q ss_pred             cEEEEeCCC-CeEEE----Eeec-CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCC--cee-eeeEEeccC---CCee
Q psy3640         433 TAKLWDVRT-MCCFY----TLKN-HEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGG--AVE-LLQTFYGHS---NEVS  499 (616)
Q Consensus       433 ~i~iwd~~~-~~~~~----~~~~-~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~-~~~~~~~~~---~~~~  499 (616)
                      .|.+||+.+ ++...    .+.. ....+..++|+|+++++++++ .++.+.+|++..  +.. .........   ....
T Consensus       152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  231 (343)
T 1ri6_A          152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR  231 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred             EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence            999999987 64432    2222 345788999999999776655 789999999954  211 122222111   1234


Q ss_pred             eEEEEEEcCCCCEEEEEe-CCCcEEEEecCC--c-eEEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEec--CCc
Q psy3640         500 KVLDIAFDYSGSKLATAS-SDQTAKLWTVGG--A-VELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWS--TES  572 (616)
Q Consensus       500 ~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~--~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd--~~~  572 (616)
                      .+..++|+|++++|+++. .++.|.+|++..  + ...+..+..+.. +..++|+|+|++|++++ .++.|.+|+  ..+
T Consensus       232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            566899999999887555 789999999972  2 344444554444 88999999999888887 689999994  446


Q ss_pred             Ce--eeeEeccCcccEEEEEEeeCCC
Q psy3640         573 GE--CIQVLKAHEDDVFSCGFNYNGD  596 (616)
Q Consensus       573 ~~--~~~~~~~h~~~V~~l~~s~~~~  596 (616)
                      ++  .+..+... ....+++|.++.+
T Consensus       311 g~~~~~~~~~~g-~~p~~i~~~~~~~  335 (343)
T 1ri6_A          311 GLLHEKGRYAVG-QGPMWVVVNAHEG  335 (343)
T ss_dssp             TEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred             ceeeEccccccC-CCCeeEEEEcccC
Confidence            64  34455443 3356788887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=8.4e-23  Score=203.14  Aligned_cols=266  Identities=8%  Similarity=0.025  Sum_probs=205.0

Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEeecCCc--CEEEEEEcCCCCEEEE-EECCCcEEEEecccccCCcccccccccccC
Q psy3640         323 STFCSCSMDHTARIFNTNSGQEMHTLKAHTG--PVISLQFSSDRNMLIT-GSFDSSIVVWDIQYQFGTRNAYAESTYRAS  399 (616)
Q Consensus       323 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  399 (616)
                      .++++++.++.|.+||+.+++.+..+.....  .+..++|+|+++.+++ +..++.|.+||+.                .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~----------------~   65 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV----------------T   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT----------------T
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC----------------C
Confidence            4688888999999999999988887763332  4788999999987654 5557899999986                4


Q ss_pred             CcceEEEecC-----ccceeEEEEccCCCEEEEEe------------CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC
Q psy3640         400 HKPIHILTGH-----SQEISNCLFNFSNSMIASSS------------LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY  462 (616)
Q Consensus       400 ~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~  462 (616)
                      ......+...     ...+..++|+|+++.++++.            .++.|.+||+.+++....+.. ...+.+++|+|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~  144 (337)
T 1pby_B           66 GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR  144 (337)
T ss_dssp             CCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT
T ss_pred             CCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC
Confidence            4444433321     22567899999999998886            579999999999988877764 45678899999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC----------------------
Q psy3640         463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ----------------------  520 (616)
Q Consensus       463 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----------------------  520 (616)
                      ++++++++  ++.+.+||+.+.... ..+.......    .+.|+|++..++..+..+                      
T Consensus       145 dg~~l~~~--~~~i~~~d~~~~~~~-~~~~~~~~~~----~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T 1pby_B          145 DGSKLYGL--GRDLHVMDPEAGTLV-EDKPIQSWEA----ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             TSSCEEEE--SSSEEEEETTTTEEE-EEECSTTTTT----TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             CCCEEEEe--CCeEEEEECCCCcEe-eeeeccccCC----CceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence            99988888  689999999876433 2232222111    126788888776554332                      


Q ss_pred             --cEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEE
Q psy3640         521 --TAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI  598 (616)
Q Consensus       521 --~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  598 (616)
                        .|.+||..++......+..+...+..++|+|+|++++++  ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|
T Consensus       218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV  294 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred             ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence              468999988655444556677788999999999999988  689999999999988887754 457889999999999


Q ss_pred             EEeeCCCcEEEcccCCC
Q psy3640         599 ITASKDNTCCIWRSMNR  615 (616)
Q Consensus       599 ~t~s~Dg~i~vW~~~~~  615 (616)
                      ++++.|+.|.+||+.+.
T Consensus       295 ~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          295 WLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEESBSSEEEEEETTTC
T ss_pred             EEEcCCCcEEEEECcCC
Confidence            99999999999999764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=5.8e-22  Score=197.04  Aligned_cols=274  Identities=8%  Similarity=0.003  Sum_probs=209.0

Q ss_pred             CEEEEEECCCeEEEEeCCCcceeEEeee-----ceeeEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEeecC-----C
Q psy3640         284 DKILTGSFDKTLKLWASAKEECIQTYRG-----HSAEVTFSPDQSTFCS-CSMDHTARIFNTNSGQEMHTLKAH-----T  352 (616)
Q Consensus       284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~-----~  352 (616)
                      +++++++.++.|.+||..+++.+..+..     ....++++|+++.+++ +..++.|.+||+.+++.+..+...     .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999988887753     3466899999987654 555789999999999888776532     1


Q ss_pred             cCEEEEEEcCCCCEEEEEE------------CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640         353 GPVISLQFSSDRNMLITGS------------FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF  420 (616)
Q Consensus       353 ~~v~~l~~~~~~~~l~~g~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  420 (616)
                      ..+.+++|+|+|+++++++            .++.|.+||+.                .......+.. ...+..++|+|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~----------------~~~~~~~~~~-~~~~~~~~~s~  144 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE----------------TLSRRKAFEA-PRQITMLAWAR  144 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT----------------TTEEEEEEEC-CSSCCCEEECT
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC----------------CCcEEEEEeC-CCCcceeEECC
Confidence            2567899999999998886            57999999986                4444444443 44577889999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC------------------------cE
Q psy3640         421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ------------------------TA  476 (616)
Q Consensus       421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg------------------------~i  476 (616)
                      +++.++++  ++.|.+||+.+++....+..+.. ...+.|+|++..++..+..+                        .+
T Consensus       145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence            99988887  68899999999988877764431 11237899988776554333                        36


Q ss_pred             EEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEE
Q psy3640         477 NLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLV  556 (616)
Q Consensus       477 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l  556 (616)
                      .+||+.+..........+.   ..+..++|+|++++++++  ++.|.+||+.+. +....+.. ...+.+++|+|+|++|
T Consensus       222 ~~~d~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l  294 (337)
T 1pby_B          222 LTMDLETGEMAMREVRIMD---VFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPL-PHSYYSVNVSTDGSTV  294 (337)
T ss_dssp             EEEETTTCCEEEEEEEECS---SCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECTTSCEE
T ss_pred             EEEeCCCCCceEeecCCCC---CceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecC-CCceeeEEECCCCCEE
Confidence            8899887644322222222   346679999999999988  799999999885 44444443 3567899999999999


Q ss_pred             EEEECCCcEEEecCCcCeeeeEeccCcc
Q psy3640         557 LSGSQDTTCRLWSTESGECIQVLKAHED  584 (616)
Q Consensus       557 ~s~s~dg~i~iwd~~~~~~~~~~~~h~~  584 (616)
                      ++++.++.|++||+.+++.+..+..+..
T Consensus       295 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~  322 (337)
T 1pby_B          295 WLGGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             EEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             EEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence            9999999999999999999988876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.9e-22  Score=196.40  Aligned_cols=253  Identities=13%  Similarity=0.068  Sum_probs=197.3

Q ss_pred             EEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCC-CceEEEeeCC-CCcEEEEEEeCC
Q psy3640         204 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKS-GHEICTYRGH-QNVVYAVAFSEP  281 (616)
Q Consensus       204 sgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~-~~~~~~~~~h-~~~V~~l~~~~~  281 (616)
                      .++.|++|++||+.+++.. .+..|...|.+++|+|++++++.+.++.|++||+.+ ++.......| ...+.+++|+ |
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s-p   94 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS-P   94 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC-T
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEEC-C
Confidence            3457889999999988766 566689999999999999977666699999999999 8877776666 4788999999 8


Q ss_pred             CCCEEEEEEC--CCeEEE--EeCCCcceeEEeee--ceeeEEEcCCCCEEE-EEeCCCcEEEEECCC-CceeEEeecCCc
Q psy3640         282 YGDKILTGSF--DKTLKL--WASAKEECIQTYRG--HSAEVTFSPDQSTFC-SCSMDHTARIFNTNS-GQEMHTLKAHTG  353 (616)
Q Consensus       282 ~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~--~~~~v~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~~~~~~~  353 (616)
                      +++.+++++.  ++...+  |+..+++. ..+..  ....++|+|+++.++ ++..++.+.+|++.. +.....+..+..
T Consensus        95 dg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A           95 DGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             TSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred             CCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence            8999999993  344555  45555543 33322  234468999999887 777889899998532 334556667888


Q ss_pred             CEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC-
Q psy3640         354 PVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD-  431 (616)
Q Consensus       354 ~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  431 (616)
                      .+.+++|+|+++.+++++ .++.+++|++..               .......+..+...+..+.|+|++++|++++.+ 
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  238 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDA  238 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEET---------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECC---------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence            999999999999888776 489999999863               234455666777788999999999999888865 


Q ss_pred             ----------CcEEEEeCCCCeE--EEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640         432 ----------GTAKLWDVRTMCC--FYTLKNHEDEVLDIAFDYSGSKLATASSDQ  474 (616)
Q Consensus       432 ----------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  474 (616)
                                +.|.+||+.+++.  +..+..|...+.+++|+|+++.|++++.+.
T Consensus       239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                      5699999988755  444457788899999999999998887653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=2.6e-21  Score=193.53  Aligned_cols=268  Identities=10%  Similarity=0.090  Sum_probs=184.2

Q ss_pred             CCcEEEEEC--CCCceeE-EeecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEEecccccCCcccccccccccCCcceE
Q psy3640         331 DHTARIFNT--NSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSF---DSSIVVWDIQYQFGTRNAYAESTYRASHKPIH  404 (616)
Q Consensus       331 dg~i~i~d~--~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  404 (616)
                      ++.|.+|++  .+++... ....+...+..++|+|+|+ +++++.   ++.|.+|++...              ....+.
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g--------------~~~~~~   79 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ--------------TAHKLN   79 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT--------------EEEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC--------------cEEEee
Confidence            345666654  4565433 2334556678899999999 555544   689999998521              112334


Q ss_pred             EEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCC---CeEEEEeecC---------CCCEEEEEEcCCCCEEEEEe
Q psy3640         405 ILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRT---MCCFYTLKNH---------EDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       405 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~~~~~~~~~~---------~~~v~~l~~~~~~~~l~~~~  471 (616)
                      ....+...+..++|+|+++++++++ .++.+.+|++..   ...+..+...         ...+.+++|+|+|+.+++..
T Consensus        80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~  159 (347)
T 3hfq_A           80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL  159 (347)
T ss_dssp             EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred             eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence            4455677788999999999888888 678999999962   2333333321         23488999999999666666


Q ss_pred             CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE-EeCCCcEEEEecCC--ce-EEeEEeeccc------
Q psy3640         472 SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT-ASSDQTAKLWTVGG--AV-ELLQTFYGHS------  541 (616)
Q Consensus       472 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~--~~-~~~~~~~~h~------  541 (616)
                      .++.+.+|++......................++|+|+|+++++ ...++.+.+|++..  +. ..........      
T Consensus       160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~  239 (347)
T 3hfq_A          160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH  239 (347)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred             CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence            78899999998322221111111111223567999999997666 45688999999863  22 2233333332      


Q ss_pred             cCEEEEEEecCCCEE-EEEECCCcEEEecCCc---CeeeeEeccCcccEEEEEEeeCCCEEEEeeCC-CcEEEcccC
Q psy3640         542 NEVSKVSFHPTGKLV-LSGSQDTTCRLWSTES---GECIQVLKAHEDDVFSCGFNYNGDTIITASKD-NTCCIWRSM  613 (616)
Q Consensus       542 ~~v~~l~~spdg~~l-~s~s~dg~i~iwd~~~---~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D-g~i~vW~~~  613 (616)
                      ..+..++|+|||++| ++...++.|.+|++..   .+.+..+..+...+..++|+|||++|++++.+ +.|.+|++.
T Consensus       240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            348899999999987 4556789999999973   25566666666678899999999998888765 899999554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.91  E-value=4.7e-23  Score=227.30  Aligned_cols=330  Identities=12%  Similarity=0.072  Sum_probs=228.5

Q ss_pred             EEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCC---cEEEEEEeCCCCCEEEEEEC---------CCeEEEEeCC
Q psy3640         234 AVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQN---VVYAVAFSEPYGDKILTGSF---------DKTLKLWASA  301 (616)
Q Consensus       234 ~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~---~V~~l~~~~~~~~~l~s~s~---------dg~i~iwd~~  301 (616)
                      +++|+|+++++..+.|++|++||+.+++....+.+|..   .+.+++|+ |++++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEEC-CCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            67999999988888899999999999998877776544   48999999 89999999876         7899999999


Q ss_pred             Cccee--EEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCE-----------------EEEEEc
Q psy3640         302 KEECI--QTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL-KAHTGPV-----------------ISLQFS  361 (616)
Q Consensus       302 ~~~~~--~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------------~~l~~~  361 (616)
                      +++.+  ..+......++|+|||+.|+.+. ++.|++||+.+++..... .++...+                 .+++|+
T Consensus        99 ~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wS  177 (719)
T 1z68_A           99 NGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWS  177 (719)
T ss_dssp             TTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEEC
T ss_pred             CCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEEC
Confidence            98773  23345566789999999999886 789999999888765432 2232222                 489999


Q ss_pred             CCCCEEEEEECCC----------------------------------cEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640         362 SDRNMLITGSFDS----------------------------------SIVVWDIQYQFGTRNAYAESTYRASHKPIHILT  407 (616)
Q Consensus       362 ~~~~~l~~g~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (616)
                      |||+.|++++.|.                                  .|++||+........      .  .......+.
T Consensus       178 PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~------~--~~~~~~~~~  249 (719)
T 1z68_A          178 PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP------Q--EVPVPAMIA  249 (719)
T ss_dssp             TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC------E--ECCCCHHHH
T ss_pred             CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce------e--EccCCccCC
Confidence            9999999988652                                  677787752110000      0  000001123


Q ss_pred             cCccceeEEEEccCCCEEEEEeCC----CcEEEEe----CCCCeEEEEe----ecCCCCEE-----EEEEcCCCCEEEE-
Q psy3640         408 GHSQEISNCLFNFSNSMIASSSLD----GTAKLWD----VRTMCCFYTL----KNHEDEVL-----DIAFDYSGSKLAT-  469 (616)
Q Consensus       408 ~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~v~-----~l~~~~~~~~l~~-  469 (616)
                      +|...+..++|+|+++++++....    ..|.+||    +.+++....+    ..+...+.     .++|+|+|+.++. 
T Consensus       250 ~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          250 SSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             TSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             CCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence            577788999999998777765433    2488999    8887765555    35666666     7899999996654 


Q ss_pred             -EeCCC--cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCC--ceEEeEEee-
Q psy3640         470 -ASSDQ--TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGG--AVELLQTFY-  538 (616)
Q Consensus       470 -~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~--~~~~~~~~~-  538 (616)
                       ...+|  .|.+|++.+..  ...+..+.   ..+..+.++ +++.++..+.+     +..++|.+..  +......+. 
T Consensus       330 ~~~~~g~~~l~~~~~~~~~--~~~lt~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~  403 (719)
T 1z68_A          330 FSDKDGYKHIHYIKDTVEN--AIQITSGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC  403 (719)
T ss_dssp             EECTTSCEEEEEESSCSTT--CEECSCSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred             EEccCCceEEEEEECCCCc--eEecccCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence             44555  46666765543  22222222   224455566 78877777665     7888888753  211112232 


Q ss_pred             ---ccccCEEEEEEecCCCEEEEE-ECC--CcEEEecCCcCeeeeEe
Q psy3640         539 ---GHSNEVSKVSFHPTGKLVLSG-SQD--TTCRLWSTESGECIQVL  579 (616)
Q Consensus       539 ---~h~~~v~~l~~spdg~~l~s~-s~d--g~i~iwd~~~~~~~~~~  579 (616)
                         +|...+..+.|+|++++++.. +.+  ..+.+||+.+++++..+
T Consensus       404 ~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~  450 (719)
T 1z68_A          404 HLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL  450 (719)
T ss_dssp             TTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence               256678899999999877754 333  46889999888765444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=1.5e-22  Score=217.35  Aligned_cols=268  Identities=11%  Similarity=0.061  Sum_probs=203.5

Q ss_pred             CcceEEEEECCCCCEEEEEEC-CCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEE-EEEC---CCcEEEEeCCC-
Q psy3640         187 LLPLTNITFDKFGTRCLTGSY-DRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCL-TGSY---DRTCKLWDIKS-  259 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasgs~-dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~ll-s~s~---d~~I~iwd~~~-  259 (616)
                      ..+|.+++|+|||++||+++. ||++.||++.+++.. .+..|. ..+..++|+|| +++ +++.   +....+|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            447999999999999999887 999999999666554 555555 68999999999 755 4543   45566665533 


Q ss_pred             --CceEEEeeCCCCcEEEEEEeCCCCC-EEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCC----C
Q psy3640         260 --GHEICTYRGHQNVVYAVAFSEPYGD-KILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMD----H  332 (616)
Q Consensus       260 --~~~~~~~~~h~~~V~~l~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~d----g  332 (616)
                        +... .+..+. .+...+|+ ++++ .+++.+.++.+.+||+.+++.......+...++|+|||+.+++++.+    +
T Consensus        99 ~~g~~~-~l~~~~-~~~~~~~s-~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A           99 RPGEEQ-RLEAVK-PMRILSGV-DTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             STTCCE-ECTTSC-SBEEEEEE-ECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCCccc-cccCCC-CceeeeeC-CCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCe
Confidence              3332 443322 33456787 4554 44444555556699999988776666666778999999999988777    7


Q ss_pred             cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640         333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS  410 (616)
Q Consensus       333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (616)
                      .|++||+.+++.. .+..|...+..++|+|||+.|+++..++  .|++||+.                ..... .+..+.
T Consensus       176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~----------------~~~~~-~~~~~~  237 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPR----------------DGSVE-DLELPS  237 (582)
T ss_dssp             EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTT----------------TCCEE-ECCCSC
T ss_pred             EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCC----------------CCcEE-EccCCC
Confidence            7999999888754 6677888899999999999999888888  89999986                44444 566676


Q ss_pred             cceeEEE--------EccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc---EEEE
Q psy3640         411 QEISNCL--------FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT---ANLW  479 (616)
Q Consensus       411 ~~i~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~---i~iw  479 (616)
                      ..+..++        |+|+|.++++++.++.+++|++  ++...   ...+.+.+++|+ +++.+++++.+..   +.+|
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~  311 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL  311 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence            6676667        9999999999999999999999  66544   344678999999 9999888887744   6666


Q ss_pred             ecCC
Q psy3640         480 TVGG  483 (616)
Q Consensus       480 d~~~  483 (616)
                      +..+
T Consensus       312 d~~~  315 (582)
T 3o4h_A          312 PSGE  315 (582)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            6654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.88  E-value=9.6e-20  Score=182.06  Aligned_cols=269  Identities=14%  Similarity=0.130  Sum_probs=188.6

Q ss_pred             EEEEEEC----CCcEEEEEC--CCCcEEE-EEeccCCcEEEEEEcCCCCEEEEEC---CCcEEEEeCCCCc--eEEEeeC
Q psy3640         201 RCLTGSY----DRTCKLWDI--KSGHEIC-TYRGHQNVVYAVAFSEPYGCLTGSY---DRTCKLWDIKSGH--EICTYRG  268 (616)
Q Consensus       201 ~lasgs~----dg~i~iwd~--~~~~~~~-~~~~h~~~I~~l~fs~~~~lls~s~---d~~I~iwd~~~~~--~~~~~~~  268 (616)
                      .+++|++    ++.|.+|++  ++++... ....+...+..++|+|++++++++.   ++.|.+||+.+++  .+..+..
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~   83 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA   83 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec
Confidence            4555643    445777765  4565443 3445667788999999999655554   6899999998776  4445556


Q ss_pred             CCCcEEEEEEeCCCCCEEEEEE-CCCeEEEEeCCC-c--ceeEEeee------------ceeeEEEcCCCCEEEEEeCCC
Q psy3640         269 HQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAK-E--ECIQTYRG------------HSAEVTFSPDQSTFCSCSMDH  332 (616)
Q Consensus       269 h~~~V~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~-~--~~~~~~~~------------~~~~v~~~~~~~~l~~~~~dg  332 (616)
                      +...+..++|+ |++++|++++ .++.+.+|++.. +  +.+..+..            +...++|+|+++.+++...++
T Consensus        84 ~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~  162 (347)
T 3hfq_A           84 PGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD  162 (347)
T ss_dssp             ESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred             CCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence            77888999999 8899888888 689999999963 2  22333322            133579999999666666788


Q ss_pred             cEEEEECC-CCceeE--EeecC-CcCEEEEEEcCCCCEEEE-EECCCcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640         333 TARIFNTN-SGQEMH--TLKAH-TGPVISLQFSSDRNMLIT-GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT  407 (616)
Q Consensus       333 ~i~i~d~~-~~~~~~--~~~~~-~~~v~~l~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (616)
                      .|.+|++. +++...  .+..+ ...+..++|+|+|+++++ ...++.+.+|++.....            .........
T Consensus       163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g------------~~~~~~~~~  230 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG------------AFTQLGIVK  230 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT------------EEEEEEEEE
T ss_pred             EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC------------ceEEeeeee
Confidence            99999998 454332  22222 336788999999996666 45678999999863110            001111222


Q ss_pred             cCc------cceeEEEEccCCCEE-EEEeCCCcEEEEeCC---CCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC-CcE
Q psy3640         408 GHS------QEISNCLFNFSNSMI-ASSSLDGTAKLWDVR---TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD-QTA  476 (616)
Q Consensus       408 ~~~------~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i  476 (616)
                      ...      ..+..++|+|+++++ ++...++.|.+|++.   +...+..+..+...+..++|+|+|++|++++.+ +.+
T Consensus       231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  310 (347)
T 3hfq_A          231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA  310 (347)
T ss_dssp             SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred             ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence            211      347789999999977 455568999999987   335566666666778999999999998888765 899


Q ss_pred             EEEecC
Q psy3640         477 NLWTVG  482 (616)
Q Consensus       477 ~iwd~~  482 (616)
                      .+|+++
T Consensus       311 ~v~~~d  316 (347)
T 3hfq_A          311 TLYARD  316 (347)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.88  E-value=2.1e-21  Score=214.07  Aligned_cols=326  Identities=9%  Similarity=-0.001  Sum_probs=219.6

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec------eeeEEEcCCCCEEEEEeC---------CCcEEEEEC
Q psy3640         275 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH------SAEVTFSPDQSTFCSCSM---------DHTARIFNT  339 (616)
Q Consensus       275 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~l~~~~~---------dg~i~i~d~  339 (616)
                      +++|+ +++. ++..+.|++|++||+.+++....+..+      ...++|+||+++|++++.         ++.|++||+
T Consensus        20 ~~~~s-~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWI-SGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEES-SSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEEC-CCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            67898 7775 555557999999999999988877765      557899999999998876         689999999


Q ss_pred             CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccc-------
Q psy3640         340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE-------  412 (616)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  412 (616)
                      .+++.+.... ....+..++|+|||+.|+.+. ++.|++|++.........       ........+.++...       
T Consensus        98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~-------~~~~~~~v~~g~~~~v~~ee~~  168 (719)
T 1z68_A           98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQIT-------FNGRENKIFNGIPDWVYEEEML  168 (719)
T ss_dssp             TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECC-------CCCBTTTEEESSCCHHHHHHTT
T ss_pred             CCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEe-------cCCCcCCeEcccccceeeeecc
Confidence            9887621111 135688999999999999986 789999998632211000       000011112233222       


Q ss_pred             --eeEEEEccCCCEEEEEeCCC----------------------------------cEEEEeCCCCeEE---E-----Ee
Q psy3640         413 --ISNCLFNFSNSMIASSSLDG----------------------------------TAKLWDVRTMCCF---Y-----TL  448 (616)
Q Consensus       413 --i~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~~~~~---~-----~~  448 (616)
                        ...++|+|||+.|++++.|.                                  .|++||+.+++..   .     .+
T Consensus       169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~  248 (719)
T 1z68_A          169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI  248 (719)
T ss_dssp             CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred             cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence              25899999999999988652                                  7889999887642   1     12


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEe----cCCceeeeeEE----eccCCCee--eEEEEEEcCCCCEEE
Q psy3640         449 KNHEDEVLDIAFDYSGSKLATASSDQ----TANLWT----VGGAVELLQTF----YGHSNEVS--KVLDIAFDYSGSKLA  514 (616)
Q Consensus       449 ~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd----~~~~~~~~~~~----~~~~~~~~--~i~~~~~s~~~~~l~  514 (616)
                      ..+...+.+++|+||++++++....+    .|.+||    ..++... ...    ..+.....  ....+.|+|||+.++
T Consensus       249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  327 (719)
T 1z68_A          249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP-KTQEHIEESRTGWAGGFFVSTPVFSYDAISYY  327 (719)
T ss_dssp             HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC-GGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred             CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE-EEEecccccCCceEccccCCccEECCCCCeEE
Confidence            35777899999999987777644332    488888    6554322 222    22222211  011568999999665


Q ss_pred             E--EeCCC--cEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECC-----CcEEEecCCc--Ce-eeeEec--
Q psy3640         515 T--ASSDQ--TAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD-----TTCRLWSTES--GE-CIQVLK--  580 (616)
Q Consensus       515 ~--~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iwd~~~--~~-~~~~~~--  580 (616)
                      .  ...+|  .|.+|++.++.  ...+..+...+..+.++ +++.|+..+.+     +..++|.+..  +. ....+.  
T Consensus       328 ~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~  404 (719)
T 1z68_A          328 KIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH  404 (719)
T ss_dssp             EEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT
T ss_pred             EEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc
Confidence            4  44555  46667776543  34555666678888888 88888777665     7889998764  42 123332  


Q ss_pred             --cCcccEEEEEEeeCCCEEEE-eeCC--CcEEEcccCCC
Q psy3640         581 --AHEDDVFSCGFNYNGDTIIT-ASKD--NTCCIWRSMNR  615 (616)
Q Consensus       581 --~h~~~V~~l~~s~~~~~l~t-~s~D--g~i~vW~~~~~  615 (616)
                        +|...+..+.|+|++++++. ++.+  ..+.+|++.+.
T Consensus       405 ~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g  444 (719)
T 1z68_A          405 LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD  444 (719)
T ss_dssp             TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence              36667889999999987764 3333  46788887653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.88  E-value=1.7e-20  Score=207.05  Aligned_cols=360  Identities=11%  Similarity=0.086  Sum_probs=235.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCc-----EEEEEEcCCCCEE-EEECC---------CcE
Q psy3640         188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGCL-TGSYD---------RTC  252 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~-----I~~l~fs~~~~ll-s~s~d---------~~I  252 (616)
                      ....+++|+|||++++++  ||+|++||+.+++....+.+|...     ...++||||++.+ .++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999999986  999999999999988888887643     2347899999965 44443         677


Q ss_pred             EEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-eec-------------------
Q psy3640         253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-RGH-------------------  312 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~-------------------  312 (616)
                      .+||+.+++.. .+..|...+...+|| |+|+.||.++ ++.|.+|++.+++..+.. .++                   
T Consensus        95 ~~~d~~~~~~~-~l~~~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~  171 (740)
T 4a5s_A           95 DIYDLNKRQLI-TEERIPNNTQWVTWS-PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS  171 (740)
T ss_dssp             EEEETTTTEEC-CSSCCCTTEEEEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred             EEEECCCCcEE-EcccCCCcceeeEEC-CCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence            89999999864 466788899999999 8999999885 689999999888754421 121                   


Q ss_pred             -eeeEEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640         313 -SAEVTFSPDQSTFCSCSMDHT-ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA  390 (616)
Q Consensus       313 -~~~v~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  390 (616)
                       ...+.|+|||+.|+.++.|.. +.+|++......   ..+...+..+.+.+.|..    .....|++||+.....    
T Consensus       172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~----  240 (740)
T 4a5s_A          172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSS----  240 (740)
T ss_dssp             SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCS----
T ss_pred             CCcceEECCCCCEEEEEEEcccCCceEEEEeecCC---CCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCC----
Confidence             123789999999998876544 777765321100   024455677777776642    1123688899863000    


Q ss_pred             ccccccccCCc--ceEEEe------cCccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCe----EEE--Ee--ec
Q psy3640         391 YAESTYRASHK--PIHILT------GHSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMC----CFY--TL--KN  450 (616)
Q Consensus       391 ~~~~~~~~~~~--~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~----~~~--~~--~~  450 (616)
                               ..  ....+.      ++...+..++|+|+++.++.....    ..|.+||+.+++    +..  .+  ..
T Consensus       241 ---------~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~  311 (740)
T 4a5s_A          241 ---------VTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS  311 (740)
T ss_dssp             ---------SSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred             ---------CCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence                     21  122222      367778999999999976665432    369999998876    221  11  34


Q ss_pred             CCCCEE-----EEEEcCCCCEEE-EEe-CCC--cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC--
Q psy3640         451 HEDEVL-----DIAFDYSGSKLA-TAS-SDQ--TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD--  519 (616)
Q Consensus       451 ~~~~v~-----~l~~~~~~~~l~-~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--  519 (616)
                      +...+.     ..+|+|||+.++ ..+ .+|  .|.+|+..++..  ..+......   +..+. .++++.++..+..  
T Consensus       312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~--~~lT~g~~~---v~~~~-~~d~~~i~f~~~~~~  385 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC--TFITKGTWE---VIGIE-ALTSDYLYYISNEYK  385 (740)
T ss_dssp             SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC--EESCCSSSC---EEEEE-EECSSEEEEEESCGG
T ss_pred             CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce--EecccCCEE---EEEEE-EEeCCEEEEEEecCC
Confidence            554443     788999999877 555 344  577777765422  122222222   22222 1336665554443  


Q ss_pred             ---CcEEEEe--cCCceEEeEEeec----cccCEEEEEEecCCCEEEEEECC---CcEEEecCCcCeeeeEe
Q psy3640         520 ---QTAKLWT--VGGAVELLQTFYG----HSNEVSKVSFHPTGKLVLSGSQD---TTCRLWSTESGECIQVL  579 (616)
Q Consensus       520 ---g~i~vwd--~~~~~~~~~~~~~----h~~~v~~l~~spdg~~l~s~s~d---g~i~iwd~~~~~~~~~~  579 (616)
                         +...+|.  +.+. .....+..    .........|||++++++.....   ..+.+++..+++.+..+
T Consensus       386 ~~~~~~~ly~v~~~g~-~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l  456 (740)
T 4a5s_A          386 GMPGGRNLYKIQLIDY-TKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL  456 (740)
T ss_dssp             GCTTCBEEEEEETTEE-EEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred             CCCceeEEEEEECCCC-CcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence               3445554  4432 22222321    23578899999999987765543   46888888877665554

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.88  E-value=1.7e-20  Score=187.50  Aligned_cols=276  Identities=9%  Similarity=0.001  Sum_probs=190.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-cCEEEEEEcCCCCEEEE-EECCCcEEEEecccccCCcccccc
Q psy3640         316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-GPVISLQFSSDRNMLIT-GSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       316 v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~-g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      +++++++..+++++.++.|.+||..+++.+..+..+. ..+..++|+|+++.+++ +..++.|.+||+.           
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-----------   73 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-----------   73 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-----------
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-----------
Confidence            3567788889999999999999999998888876543 25688999999986654 4568999999986           


Q ss_pred             cccccCCcceEEEecC------ccceeEEEEccCCCEEEEEeCC------------CcEEEEeCCCCe---EEEEeecCC
Q psy3640         394 STYRASHKPIHILTGH------SQEISNCLFNFSNSMIASSSLD------------GTAKLWDVRTMC---CFYTLKNHE  452 (616)
Q Consensus       394 ~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~---~~~~~~~~~  452 (616)
                           .......+...      ...+..++|+|+++++++++.+            +.|.+||+.+++   .+..+. +.
T Consensus        74 -----t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~  147 (349)
T 1jmx_B           74 -----TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MP  147 (349)
T ss_dssp             -----TTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CC
T ss_pred             -----CCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CC
Confidence                 44444444322      2337789999999999998865            899999998843   333343 34


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccC---------------------CCeeeEEEEEEcCCCC
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHS---------------------NEVSKVLDIAFDYSGS  511 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------~~~~~i~~~~~s~~~~  511 (616)
                      ..+.+++|+|+|+ +++++.  .+.+||..++.... .+....                     ........+++++++.
T Consensus       148 ~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  223 (349)
T 1jmx_B          148 RQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTV-ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  223 (349)
T ss_dssp             SSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEE-EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             CcccceeECCCCc-EEEccC--cEEEEeCCCCceec-cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCc
Confidence            4688999999999 665543  49999997764332 222111                     0001234466665542


Q ss_pred             EEEEEeC-CCcEEEEecCCceEEeEEeeccccCEEEEEEec-CCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEE
Q psy3640         512 KLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHP-TGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSC  589 (616)
Q Consensus       512 ~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~sp-dg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l  589 (616)
                      ....... ...+..++..++......+..+...+..++|+| +|++++++  ++.|.+||+.+++.+..+..+ ..+.++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~  300 (349)
T 1jmx_B          224 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCV  300 (349)
T ss_dssp             ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEE
T ss_pred             CCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccce
Confidence            2110000 011122344333333333334667889999999 99999988  889999999999988887644 346789


Q ss_pred             EEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         590 GFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       590 ~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      +|+|++++|++++.++.|.+||+.+.
T Consensus       301 ~~s~dg~~l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          301 AFDKKGDKLYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EECCCCCEEEEecCCCeEEEEecccc
Confidence            99999999988889999999999764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.87  E-value=5.8e-20  Score=183.57  Aligned_cols=264  Identities=11%  Similarity=0.038  Sum_probs=196.3

Q ss_pred             EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEee
Q psy3640         191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYR  267 (616)
Q Consensus       191 ~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~  267 (616)
                      +.++++++++++++++.+++|.+||..+++.+..+..+. ..+..++|+|+++.+  +...++.|.+||+.+++.+..+.
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            346788999999999999999999999999988887554 257899999999843  55578999999999999887776


Q ss_pred             CCC------CcEEEEEEeCCCCCEEEEEECC------------CeEEEEeCCCcce---eEEeee--ceeeEEEcCCCCE
Q psy3640         268 GHQ------NVVYAVAFSEPYGDKILTGSFD------------KTLKLWASAKEEC---IQTYRG--HSAEVTFSPDQST  324 (616)
Q Consensus       268 ~h~------~~V~~l~~~~~~~~~l~s~s~d------------g~i~iwd~~~~~~---~~~~~~--~~~~v~~~~~~~~  324 (616)
                      .+.      ..+..++|+ |+++++++++.+            +.|.+||+.+++.   +..+..  ....++|+|+++ 
T Consensus        83 ~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-  160 (349)
T ss_dssp             SCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-
T ss_pred             cccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-
Confidence            432      236789999 889999988865            8999999988543   333332  234567999999 


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeecCCc------------------------CEEEEEEcCCCCE-----------EEE
Q psy3640         325 FCSCSMDHTARIFNTNSGQEMHTLKAHTG------------------------PVISLQFSSDRNM-----------LIT  369 (616)
Q Consensus       325 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------------------~v~~l~~~~~~~~-----------l~~  369 (616)
                      +++++  +.|.+||..+++....+..+..                        ....+++++++..           +..
T Consensus       161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            55553  4499999999988877654320                        2344666654321           112


Q ss_pred             EECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q psy3640         370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTL  448 (616)
Q Consensus       370 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~  448 (616)
                      ...++.+++|++.                         .+...+..++++| ++++++++  ++.|.+||+.+++.+..+
T Consensus       239 ~~~~~~~~~~~~~-------------------------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~  291 (349)
T 1jmx_B          239 DLKTGKTHTQEFA-------------------------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAA  291 (349)
T ss_dssp             ETTTCCEEEEEEE-------------------------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eccCCcEEecccc-------------------------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEE
Confidence            2233444444432                         2445677899999 99999888  789999999999988777


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee
Q psy3640         449 KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE  486 (616)
Q Consensus       449 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  486 (616)
                      .. ...+.+++|+|++++|++++.++.|.+||..+...
T Consensus       292 ~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          292 NL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             EC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             cC-CCCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence            63 34577999999999999888899999999987643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=8.2e-21  Score=203.90  Aligned_cols=267  Identities=8%  Similarity=0.039  Sum_probs=190.4

Q ss_pred             eeEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeecCC-cCEEEEEEcCCCCEEEEEEC---CCcEEEEecccccCCc
Q psy3640         314 AEVTFSPDQSTFCSCSM-DHTARIFNTNSGQEMHTLKAHT-GPVISLQFSSDRNMLITGSF---DSSIVVWDIQYQFGTR  388 (616)
Q Consensus       314 ~~v~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~~~~~~l~~g~~---dg~i~iwd~~~~~~~~  388 (616)
                      ..++++|||+.|+.++. +|++.+|++.+++. ..+..+. ..+.+++|+|| +.+++++.   +...++|.+....   
T Consensus        25 ~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~---   99 (582)
T 3o4h_A           25 YSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR---   99 (582)
T ss_dssp             EEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS---
T ss_pred             heeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC---
Confidence            34567777777776665 77788888755544 4444454 68899999999 77777765   4566777665200   


Q ss_pred             ccccccccccCCcceEEEecCccceeEEEEccCCCE-EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEE
Q psy3640         389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKL  467 (616)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  467 (616)
                                 ......+... ......+|+|+++. +++...++.+.+||+.+++.......+.   .+++|+|||+++
T Consensus       100 -----------~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~l  164 (582)
T 3o4h_A          100 -----------PGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLI  164 (582)
T ss_dssp             -----------TTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEE
T ss_pred             -----------CCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEE
Confidence                       1111122222 22335678888753 3444445566699999987665554333   789999999999


Q ss_pred             EEEeCC----CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceEEeEEeeccc
Q psy3640         468 ATASSD----QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ--TAKLWTVGGAVELLQTFYGHS  541 (616)
Q Consensus       468 ~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~h~  541 (616)
                      ++++.+    +.|++||+.++...  .+..+.   ..+..++|+|||+.|+++..++  .|++||+.++...  .+.+|.
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--~~~~~~  237 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGLR--VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--DLELPS  237 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCCE--EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--ECCCSC
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCce--EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--EccCCC
Confidence            988777    78999998775432  333333   3467899999999999888888  8999999886443  667777


Q ss_pred             cCEEEEE--------EecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCc---EEEc
Q psy3640         542 NEVSKVS--------FHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT---CCIW  610 (616)
Q Consensus       542 ~~v~~l~--------~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~---i~vW  610 (616)
                      ..+..++        |+|||.++++++.|+.+++|++  |+...   .+.+.|.+++|+ +++++++++.+.+   +.+|
T Consensus       238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~  311 (582)
T 3o4h_A          238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSL  311 (582)
T ss_dssp             SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEE
Confidence            7777777        9999999999999999999999  76655   344678999999 9999999888744   7777


Q ss_pred             ccC
Q psy3640         611 RSM  613 (616)
Q Consensus       611 ~~~  613 (616)
                      +..
T Consensus       312 d~~  314 (582)
T 3o4h_A          312 PSG  314 (582)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=2.1e-19  Score=180.60  Aligned_cols=276  Identities=11%  Similarity=0.094  Sum_probs=184.3

Q ss_pred             CEEEEEe----CCCcEEEEEC--CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEecccccCCccccc
Q psy3640         323 STFCSCS----MDHTARIFNT--NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD----SSIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       323 ~~l~~~~----~dg~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~  392 (616)
                      .++++|+    .++.|.+|++  .+++.......+...+..++|+|+|++|++++.+    +.|.+|++.....      
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g------   87 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG------   87 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT------
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC------
Confidence            4455554    3467888865  4565433322266777889999999999999886    7999999863100      


Q ss_pred             ccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEe------ec--------CCCCEEE
Q psy3640         393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTL------KN--------HEDEVLD  457 (616)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~------~~--------~~~~v~~  457 (616)
                            ....+.....+......+++  +++.+++++ .++.+.+|++.....+..+      .+        +...+.+
T Consensus        88 ------~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~  159 (361)
T 3scy_A           88 ------TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHC  159 (361)
T ss_dssp             ------EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEE
T ss_pred             ------cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceE
Confidence                  11222333334455666666  788777766 5789999998754322111      11        1234688


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEecCCcee------eeeE---EeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEe
Q psy3640         458 IAFDYSGSKLATAS-SDQTANLWTVGGAVE------LLQT---FYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWT  526 (616)
Q Consensus       458 l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd  526 (616)
                      ++|+|+|+++++++ .++.+.+|++.....      ....   .............++|+|+|+++++++ .++.|.+|+
T Consensus       160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  239 (361)
T 3scy_A          160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR  239 (361)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence            99999999776655 478999999875432      1110   011111123356799999999888877 689999999


Q ss_pred             cCCceE-EeEEee---ccccCEEEEEEecCCCEEEEEECC--CcEEEecCC--cCe--eeeEeccCcccEEEEEEeeCCC
Q psy3640         527 VGGAVE-LLQTFY---GHSNEVSKVSFHPTGKLVLSGSQD--TTCRLWSTE--SGE--CIQVLKAHEDDVFSCGFNYNGD  596 (616)
Q Consensus       527 ~~~~~~-~~~~~~---~h~~~v~~l~~spdg~~l~s~s~d--g~i~iwd~~--~~~--~~~~~~~h~~~V~~l~~s~~~~  596 (616)
                      +.++.. ......   .+......++|+|||++|+++..+  +.|.+|++.  +++  .+..+.. ...+.+++|+|||+
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~  318 (361)
T 3scy_A          240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGK  318 (361)
T ss_dssp             EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSC
T ss_pred             ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCC
Confidence            975422 222222   233457899999999998777654  899999985  454  4455554 45678999999999


Q ss_pred             EEEEee-CCCcEEEcccC
Q psy3640         597 TIITAS-KDNTCCIWRSM  613 (616)
Q Consensus       597 ~l~t~s-~Dg~i~vW~~~  613 (616)
                      +|++++ .++.|.+|++.
T Consensus       319 ~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          319 YLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEEE
Confidence            988887 67999997664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=3.9e-18  Score=171.39  Aligned_cols=304  Identities=12%  Similarity=0.076  Sum_probs=196.6

Q ss_pred             CEEEEEE----CCCeEEEEeC--CCcceeEEee---eceeeEEEcCCCCEEEEEeCC----CcEEEEECCC--Cce--eE
Q psy3640         284 DKILTGS----FDKTLKLWAS--AKEECIQTYR---GHSAEVTFSPDQSTFCSCSMD----HTARIFNTNS--GQE--MH  346 (616)
Q Consensus       284 ~~l~s~s----~dg~i~iwd~--~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~d----g~i~i~d~~~--~~~--~~  346 (616)
                      .+++.|+    .++.|.+|++  .+++......   .....++|+|++++|++++.+    +.+.+|++..  ++.  +.
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~   93 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN   93 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence            3455554    3567888865  4554332221   222447999999999999875    7999998865  432  33


Q ss_pred             EeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEE
Q psy3640         347 TLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI  425 (616)
Q Consensus       347 ~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  425 (616)
                      ....+......+++  +++++++++ .++.+.+|++...............  ..........+...+.+++|+|+++++
T Consensus        94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF--KGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC--CCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc--cCCCCCccccCCCcceEEEECCCCCEE
Confidence            44445566778888  788777776 5789999998632211100000000  000000001123345789999999977


Q ss_pred             EEEe-CCCcEEEEeCCCCe-------E------EEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCcee-eee
Q psy3640         426 ASSS-LDGTAKLWDVRTMC-------C------FYTLKNHEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGGAVE-LLQ  489 (616)
Q Consensus       426 ~~~~-~dg~i~iwd~~~~~-------~------~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~  489 (616)
                      ++++ .++.+.+|++....       .      ..........+..++|+|+|+++++++ .++.|.+|++.++.. ...
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~  249 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ  249 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence            6655 47899999876433       1      111223456688999999999888777 689999999975432 223


Q ss_pred             EEeccCCCeeeEEEEEEcCCCCEEEEEeCC--CcEEEEecC--Cc-eEEeEEeeccccCEEEEEEecCCCEEEEEE-CCC
Q psy3640         490 TFYGHSNEVSKVLDIAFDYSGSKLATASSD--QTAKLWTVG--GA-VELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDT  563 (616)
Q Consensus       490 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~vwd~~--~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg  563 (616)
                      ..............++|+|+|++|+++..+  +.|.+|++.  ++ ...+..+.. ...+..++|+|||++|++++ .++
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence            333333333445789999999999777665  899999995  22 234444444 55788999999999998887 678


Q ss_pred             cEEEe--cCCcCeeeeEe-ccCcccEEEEEEe
Q psy3640         564 TCRLW--STESGECIQVL-KAHEDDVFSCGFN  592 (616)
Q Consensus       564 ~i~iw--d~~~~~~~~~~-~~h~~~V~~l~~s  592 (616)
                      .|.+|  |.++|+..... ..+...+.+++|.
T Consensus       329 ~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          329 VIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            89995  55677765443 2344568888886

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=1.5e-19  Score=199.49  Aligned_cols=355  Identities=9%  Similarity=0.063  Sum_probs=229.2

Q ss_pred             CcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc-----EEEEEEeCCCCCEEEEEECC---------CeE
Q psy3640         230 NVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGDKILTGSFD---------KTL  295 (616)
Q Consensus       230 ~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~d---------g~i  295 (616)
                      ....+++|+||+.++..+ |++|++||+.+++....+.+|...     ...++|+ |++++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S-pdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEEC-CCCCEEEEEECCeeeEEEccceEE
Confidence            345688999999988666 999999999999988888877643     2347889 899999999876         566


Q ss_pred             EEEeCCCcceeEEe--eeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCE-----------------
Q psy3640         296 KLWASAKEECIQTY--RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL-KAHTGPV-----------------  355 (616)
Q Consensus       296 ~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v-----------------  355 (616)
                      .+||+.+++.....  .+....++|+|||+.|+.+. ++.|++|++.+++..... .++...+                 
T Consensus        95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~  173 (740)
T 4a5s_A           95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (740)
T ss_dssp             EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence            79999998765422  23345668999999999885 689999999887754322 2232222                 


Q ss_pred             EEEEEcCCCCEEEEEECCCc-EEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcE
Q psy3640         356 ISLQFSSDRNMLITGSFDSS-IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA  434 (616)
Q Consensus       356 ~~l~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  434 (616)
                      .++.|+|||+.|+.++.|.+ +.+|++.....             ..      .+...+..+.+...|..    .....+
T Consensus       174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------~~------~~~~~~~~~~yp~~G~~----~~~~~l  230 (740)
T 4a5s_A          174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------ES------LQYPKTVRVPYPKAGAV----NPTVKF  230 (740)
T ss_dssp             BCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------TT------CSSCEEEEEECCBTTSC----CCEEEE
T ss_pred             cceEECCCCCEEEEEEEcccCCceEEEEeecC-------------CC------CCCCcceeecCCCCcCc----CCeeEE
Confidence            35899999999998876554 88888752210             00      23334455566555532    112368


Q ss_pred             EEEeCCC---Ce--EEEEee------cCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecCCce----ee-eeEE--e
Q psy3640         435 KLWDVRT---MC--CFYTLK------NHEDEVLDIAFDYSGSKLATASS----DQTANLWTVGGAV----EL-LQTF--Y  492 (616)
Q Consensus       435 ~iwd~~~---~~--~~~~~~------~~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~----~~-~~~~--~  492 (616)
                      ++||+.+   +.  ....+.      ++...+..++|+|+|+.++....    +..|.+||+.++.    .. ...+  .
T Consensus       231 ~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~  310 (740)
T 4a5s_A          231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM  310 (740)
T ss_dssp             EEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred             EEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeec
Confidence            9999998   72  222333      26778999999999997665533    2369999987764    11 1111  2


Q ss_pred             ccCCCee--eEEEEEEcCCCCEEE-EEeC-C--CcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECC----
Q psy3640         493 GHSNEVS--KVLDIAFDYSGSKLA-TASS-D--QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD----  562 (616)
Q Consensus       493 ~~~~~~~--~i~~~~~s~~~~~l~-~~~~-d--g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d----  562 (616)
                      .+..-..  ......|+|||+.++ ..+. +  ..|.+|+..++. . ..+......+..+. .+|++.|+..+..    
T Consensus       311 ~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~-~-~~lT~g~~~v~~~~-~~d~~~i~f~~~~~~~~  387 (740)
T 4a5s_A          311 STTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-C-TFITKGTWEVIGIE-ALTSDYLYYISNEYKGM  387 (740)
T ss_dssp             CSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS-C-EESCCSSSCEEEEE-EECSSEEEEEESCGGGC
T ss_pred             cCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc-e-EecccCCEEEEEEE-EEeCCEEEEEEecCCCC
Confidence            2221111  022468999999877 6654 3  457788887642 2 23444455666654 3557666654443    


Q ss_pred             -Cc--EEEecCCcCeeeeEec----cCcccEEEEEEeeCCCEEEEeeCC---CcEEEcccC
Q psy3640         563 -TT--CRLWSTESGECIQVLK----AHEDDVFSCGFNYNGDTIITASKD---NTCCIWRSM  613 (616)
Q Consensus       563 -g~--i~iwd~~~~~~~~~~~----~h~~~V~~l~~s~~~~~l~t~s~D---g~i~vW~~~  613 (616)
                       +.  |...++..+.....+.    +....+....|||++++++.....   ..+.+++..
T Consensus       388 ~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~  448 (740)
T 4a5s_A          388 PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV  448 (740)
T ss_dssp             TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred             CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence             33  4444554444332333    223568889999999977655433   346666654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=2.8e-19  Score=181.57  Aligned_cols=296  Identities=13%  Similarity=0.071  Sum_probs=205.8

Q ss_pred             EEEeCCCCceEEEeeCCCCcEEE-----EEEeCCCCCEEEEEEC-CC--eEEEEeCCCcceeEEeeecee---eEEEcCC
Q psy3640         253 KLWDIKSGHEICTYRGHQNVVYA-----VAFSEPYGDKILTGSF-DK--TLKLWASAKEECIQTYRGHSA---EVTFSPD  321 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~~~V~~-----l~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~---~v~~~~~  321 (616)
                      ..+|..++..+..+..|......     .+|+ |+++.|+.++. ++  .|.+||+.+++......++..   ..+|+|+
T Consensus        13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd   91 (388)
T 3pe7_A           13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD   91 (388)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred             EEecCCCCcceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence            34577888888888888877766     7899 89999999887 66  488889999887776665543   3589999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEE--EcCCCCEEEEEE----------------------CCCcEE
Q psy3640         322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQ--FSSDRNMLITGS----------------------FDSSIV  377 (616)
Q Consensus       322 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~--~~~~~~~l~~g~----------------------~dg~i~  377 (616)
                      ++.|+.++.++.+++||+.+++.......+...+....  ++|++..++...                      .+..|.
T Consensus        92 g~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (388)
T 3pe7_A           92 DDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM  171 (388)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence            99999999999999999999988776666665554444  489999887432                      346788


Q ss_pred             EEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCeEEEEeec
Q psy3640         378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLD------GTAKLWDVRTMCCFYTLKN  450 (616)
Q Consensus       378 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~  450 (616)
                      +||+.                .. ....+..+...+..+.|+| +++.++....+      ..|.++|...+.. ..+..
T Consensus       172 ~~d~~----------------~g-~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~  233 (388)
T 3pe7_A          172 RVDLK----------------TG-ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT  233 (388)
T ss_dssp             EEETT----------------TC-CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC
T ss_pred             EEECC----------------CC-ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee
Confidence            88885                33 3344445666788999999 99988887753      3788888776543 33333


Q ss_pred             CC--CCEEEEEEcCCCCEEEEEeC-CC----cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640         451 HE--DEVLDIAFDYSGSKLATASS-DQ----TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK  523 (616)
Q Consensus       451 ~~--~~v~~l~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  523 (616)
                      +.  ..+...+|+|+|+.|+..+. ++    .|.+||+.++....                                   
T Consensus       234 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-----------------------------------  278 (388)
T 3pe7_A          234 HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ-----------------------------------  278 (388)
T ss_dssp             CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE-----------------------------------
T ss_pred             CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE-----------------------------------
Confidence            33  35778899999987765443 22    27788876542110                                   


Q ss_pred             EEecCCceEEeEEeecccc---CEEEEEEecCCCEEEEE---------ECCCcEEEecCCcCeeeeEeccCcc-------
Q psy3640         524 LWTVGGAVELLQTFYGHSN---EVSKVSFHPTGKLVLSG---------SQDTTCRLWSTESGECIQVLKAHED-------  584 (616)
Q Consensus       524 vwd~~~~~~~~~~~~~h~~---~v~~l~~spdg~~l~s~---------s~dg~i~iwd~~~~~~~~~~~~h~~-------  584 (616)
                                +..+.++..   ....++|+|||+.|+..         ..+..|++||+.+++.. .+..|..       
T Consensus       279 ----------l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~  347 (388)
T 3pe7_A          279 ----------LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEG  347 (388)
T ss_dssp             ----------EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTT
T ss_pred             ----------EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCccccccc
Confidence                      000000000   00112689999988754         45668999999988754 4544554       


Q ss_pred             ----cEEEEEEeeCCCEEEEee-CCCcEEEcccC
Q psy3640         585 ----DVFSCGFNYNGDTIITAS-KDNTCCIWRSM  613 (616)
Q Consensus       585 ----~V~~l~~s~~~~~l~t~s-~Dg~i~vW~~~  613 (616)
                          .+.+++|+|||+.|+.++ .+|...+|.+.
T Consensus       348 ~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          348 DRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             BSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                578889999999887665 57877787654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.85  E-value=5.7e-19  Score=177.68  Aligned_cols=273  Identities=8%  Similarity=0.052  Sum_probs=180.8

Q ss_pred             EEEEeCC--CcEEEEEC--CCCceeEE--ee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccc
Q psy3640         325 FCSCSMD--HTARIFNT--NSGQEMHT--LK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYR  397 (616)
Q Consensus       325 l~~~~~d--g~i~i~d~--~~~~~~~~--~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  397 (616)
                      +++|+..  +.|.+|++  .+++....  .. .....+..++|+|+|++|++++.+ .|.+|++..              
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~--------------   69 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKS--------------   69 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEE--------------
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECC--------------
Confidence            4555543  45777654  45554222  11 233467889999999999999887 999999851              


Q ss_pred             cCCcceEEEec-CccceeEEEEccCCCE--EEEEe-------------CCCcEEEEeCC-CCeEEEEee----cCCCCEE
Q psy3640         398 ASHKPIHILTG-HSQEISNCLFNFSNSM--IASSS-------------LDGTAKLWDVR-TMCCFYTLK----NHEDEVL  456 (616)
Q Consensus       398 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~  456 (616)
                       .......... ..+....++++|+++.  ++++.             .+|.+.+|++. .++....+.    .+...+.
T Consensus        70 -~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~  148 (365)
T 1jof_A           70 -PTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH  148 (365)
T ss_dssp             -TTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred             -CCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence             1111111110 0123456888999994  44543             68899999997 465544443    2456799


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecC-Cceee-eeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecC--Cc
Q psy3640         457 DIAFDYSGSKLATASS-DQTANLWTVG-GAVEL-LQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVG--GA  530 (616)
Q Consensus       457 ~l~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~--~~  530 (616)
                      +++|+|+|++++++.. ++.|++|++. ++... ....... ........++|+|+|+++++++. ++.|.+|++.  ++
T Consensus       149 ~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  227 (365)
T 1jof_A          149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC-CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCC
Confidence            9999999998887764 6799999997 44321 2222111 11234678999999999988775 7899999875  33


Q ss_pred             eEE--eEEee-------cccc------CEEEEE-EecCCCEEEEEECCC------cEEEecCC-cCeeee---EeccCcc
Q psy3640         531 VEL--LQTFY-------GHSN------EVSKVS-FHPTGKLVLSGSQDT------TCRLWSTE-SGECIQ---VLKAHED  584 (616)
Q Consensus       531 ~~~--~~~~~-------~h~~------~v~~l~-~spdg~~l~s~s~dg------~i~iwd~~-~~~~~~---~~~~h~~  584 (616)
                      ...  ...+.       +|..      .+..++ |+|||++|++++.+.      .|.+|++. +++...   ....+..
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~  307 (365)
T 1jof_A          228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS  307 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred             cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC
Confidence            211  11121       1222      588999 999999988765432      89999986 666543   2333444


Q ss_pred             cEEEEEEee---CCCEEEEeeCC-CcEEEcccCC
Q psy3640         585 DVFSCGFNY---NGDTIITASKD-NTCCIWRSMN  614 (616)
Q Consensus       585 ~V~~l~~s~---~~~~l~t~s~D-g~i~vW~~~~  614 (616)
                      .+..++|+|   ||++|++++.+ +.|.+|++..
T Consensus       308 ~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence            567889999   89999998875 8999998864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=2.3e-19  Score=182.21  Aligned_cols=286  Identities=14%  Similarity=0.102  Sum_probs=199.4

Q ss_pred             heecccCCcceEE-----EEECCCCCEEEEEEC-CC--cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCC
Q psy3640         180 FKMLKSHLLPLTN-----ITFDKFGTRCLTGSY-DR--TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDR  250 (616)
Q Consensus       180 ~~~l~~h~~~i~~-----v~~s~~g~~lasgs~-dg--~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~  250 (616)
                      ...+..|......     .+|||||++||.++. +|  .|.+||+.+++......++...+..++|+||++.| .++.++
T Consensus        23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~  102 (388)
T 3pe7_A           23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR  102 (388)
T ss_dssp             EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred             eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence            4556667665655     889999999999987 66  48889999998887777777777678899999855 777788


Q ss_pred             cEEEEeCCCCceEEEeeCCCCcEEEEEEe-CCCCCEEEEEE----------------------CCCeEEEEeCCCcceeE
Q psy3640         251 TCKLWDIKSGHEICTYRGHQNVVYAVAFS-EPYGDKILTGS----------------------FDKTLKLWASAKEECIQ  307 (616)
Q Consensus       251 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-~~~~~~l~s~s----------------------~dg~i~iwd~~~~~~~~  307 (616)
                      .|++||+.+++....+..+...+....|. .+++..++...                      .+..|.+||+.+++...
T Consensus       103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~  182 (388)
T 3pe7_A          103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV  182 (388)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE
Confidence            99999999999887777777766555441 37888887532                      34689999999987655


Q ss_pred             Eeeec--eeeEEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEeecCC--cCEEEEEEcCCCCEEEEEEC-CC-
Q psy3640         308 TYRGH--SAEVTFSP-DQSTFCSCSMD------HTARIFNTNSGQEMHTLKAHT--GPVISLQFSSDRNMLITGSF-DS-  374 (616)
Q Consensus       308 ~~~~~--~~~v~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~g~~-dg-  374 (616)
                      .....  ...++|+| +++.++....+      ..|.++|...+.. ..+..+.  ..+...+|+|||+.|+..+. ++ 
T Consensus       183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~  261 (388)
T 3pe7_A          183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS  261 (388)
T ss_dssp             EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred             eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence            44332  34568999 99999887754      3788888775543 4444344  35778999999997765443 22 


Q ss_pred             ---cEEEEecccccCCcccccccccccCCcceEEEecCc---cceeEEEEccCCCEEEEE---------eCCCcEEEEeC
Q psy3640         375 ---SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS---QEISNCLFNFSNSMIASS---------SLDGTAKLWDV  439 (616)
Q Consensus       375 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~---------~~dg~i~iwd~  439 (616)
                         .|++||+....              ...+....++.   .......|+|+|+.++..         ..+..|++||+
T Consensus       262 ~~~~l~~~d~~~g~--------------~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          262 PDRFIYSADPETLE--------------NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             CCEEEEEECTTTCC--------------EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEET
T ss_pred             CcceEEEEecCCCc--------------eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEec
Confidence               39999986321              11121222110   001223689999887754         44568999999


Q ss_pred             CCCeEEEEeecCCC-----------CEEEEEEcCCCCEEEEEe-CCCcEEEEec
Q psy3640         440 RTMCCFYTLKNHED-----------EVLDIAFDYSGSKLATAS-SDQTANLWTV  481 (616)
Q Consensus       440 ~~~~~~~~~~~~~~-----------~v~~l~~~~~~~~l~~~~-~dg~i~iwd~  481 (616)
                      .+++. ..+..+..           .+.+++|+|+|+.|+..+ .+|...+|.+
T Consensus       328 ~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          328 KNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             TTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            98865 34444554           578889999999887665 4666666654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=8.7e-20  Score=187.28  Aligned_cols=214  Identities=16%  Similarity=0.147  Sum_probs=154.5

Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEE----E
Q psy3640         352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIA----S  427 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~----~  427 (616)
                      ...+..+++++++.++++++.++ +++|+.....................+. ....+...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG-LLVPMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC-EEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc-ccccCCCcccEEEEcCCCCEEEEEEec
Confidence            44678899999999999999887 8998875321110000000000000111 1234567899999999999999    7


Q ss_pred             EeCCCcEEEEeCCCC--------e---EEEEeecCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceeeeeEEeccC
Q psy3640         428 SSLDGTAKLWDVRTM--------C---CFYTLKNHEDEVLDIAFDYS-GSKLATASSDQTANLWTVGGAVELLQTFYGHS  495 (616)
Q Consensus       428 ~~~dg~i~iwd~~~~--------~---~~~~~~~~~~~v~~l~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  495 (616)
                      |+.|+.|++||++++        +   ....+.+|...|.+++|+|+ +.+|++++.||+|++||+.+.           
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-----------  182 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-----------  182 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-----------
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-----------
Confidence            888999999998654        1   24455568888999999987 778888888888888888653           


Q ss_pred             CCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee
Q psy3640         496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC  575 (616)
Q Consensus       496 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~  575 (616)
                                                          .......+|...|++++|+|+|++|++|+.||.|++||++ ++.
T Consensus       183 ------------------------------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~  225 (434)
T 2oit_A          183 ------------------------------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQE  225 (434)
T ss_dssp             ------------------------------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCE
T ss_pred             ------------------------------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccc
Confidence                                                1222334688899999999999999999999999999998 666


Q ss_pred             eeEeccC-------cccEEEEEEeeCCCEEEE-eeCCCc------EEEcccCCC
Q psy3640         576 IQVLKAH-------EDDVFSCGFNYNGDTIIT-ASKDNT------CCIWRSMNR  615 (616)
Q Consensus       576 ~~~~~~h-------~~~V~~l~~s~~~~~l~t-~s~Dg~------i~vW~~~~~  615 (616)
                      ...+..|       ...|.+++|++++.++++ ++.||.      +++|++...
T Consensus       226 ~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          226 KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            6555443       337999999999887765 334433      889998753

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.84  E-value=2.4e-18  Score=172.29  Aligned_cols=293  Identities=8%  Similarity=0.041  Sum_probs=207.4

Q ss_pred             CCCCEEEEEE------CCCeEEEEeCCCcceeEEeeece-eeEEEcCCCCEEEEEeC----------CCcEEEEECCCCc
Q psy3640         281 PYGDKILTGS------FDKTLKLWASAKEECIQTYRGHS-AEVTFSPDQSTFCSCSM----------DHTARIFNTNSGQ  343 (616)
Q Consensus       281 ~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~l~~~~~----------dg~i~i~d~~~~~  343 (616)
                      ++++++++..      .|+.|.+||..+++.+.++.... ..++++|++++++++..          ++.|.+||..+++
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            4556666554      36799999999998887775332 27899999999998863          5679999999999


Q ss_pred             eeEEeecC------CcCEEEEEEcCCCCEEEEEEC--CCcEEEEecccccCCcccccccccccCCcceEE-EecCcccee
Q psy3640         344 EMHTLKAH------TGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI-LTGHSQEIS  414 (616)
Q Consensus       344 ~~~~~~~~------~~~v~~l~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~  414 (616)
                      .+..+...      ......++++|+|++|+++..  ++.|.+||+.                ..+.+.. +.. . ...
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~----------------~~~~~~~~i~~-~-~~~  154 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA----------------KGDYVEDVTAA-A-GCW  154 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT----------------TTEEEEEEGGG-T-TEE
T ss_pred             EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC----------------CCcEEEEEecC-C-Ccc
Confidence            88887643      234567999999999998874  5899999997                4444333 221 1 112


Q ss_pred             EEEEccCC-CEEEEEeCCCcEEEEeCCC-CeEEEEe------ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee
Q psy3640         415 NCLFNFSN-SMIASSSLDGTAKLWDVRT-MCCFYTL------KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE  486 (616)
Q Consensus       415 ~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~------~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~  486 (616)
                      .+.+.|++ ..+++.+.||.+.+|+... ++.....      .....++ .+.+++++..++..+.++.+.++|+.....
T Consensus       155 ~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~  233 (361)
T 2oiz_A          155 SVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV  233 (361)
T ss_dssp             EEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC
T ss_pred             eeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc
Confidence            24456654 6778888899999998765 5443221      1122221 233456777778788899999999865422


Q ss_pred             e-eeEEeccC------C-CeeeEEEEEEcCCCCEEEEEeC-----------CCcEEEEecCCceEEeEEeeccccCEEEE
Q psy3640         487 L-LQTFYGHS------N-EVSKVLDIAFDYSGSKLATASS-----------DQTAKLWTVGGAVELLQTFYGHSNEVSKV  547 (616)
Q Consensus       487 ~-~~~~~~~~------~-~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l  547 (616)
                      . ...+....      . .......++++|+++.++++..           .+.|.+||+.+. +.+..+..+.  +..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~i  310 (361)
T 2oiz_A          234 KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSM  310 (361)
T ss_dssp             EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEE
T ss_pred             eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEE
Confidence            1 11111100      0 0011112689999888887654           358999999985 6667777666  9999


Q ss_pred             EEecCCCEEEEEECCCcEEEecCCcC--eeeeEeccCcccEEEEEEeeCCC
Q psy3640         548 SFHPTGKLVLSGSQDTTCRLWSTESG--ECIQVLKAHEDDVFSCGFNYNGD  596 (616)
Q Consensus       548 ~~spdg~~l~s~s~dg~i~iwd~~~~--~~~~~~~~h~~~V~~l~~s~~~~  596 (616)
                      +|+|||++|++++. +.|.+||..++  +.+..+..+......++++|+|+
T Consensus       311 a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          311 TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999998886 99999999999  99999876777788999999985

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=2.2e-18  Score=176.84  Aligned_cols=257  Identities=15%  Similarity=0.143  Sum_probs=170.8

Q ss_pred             CCcCEEEEEEcCCCCEEE----EEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-CCEE
Q psy3640         351 HTGPVISLQFSSDRNMLI----TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS-NSMI  425 (616)
Q Consensus       351 ~~~~v~~l~~~~~~~~l~----~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l  425 (616)
                      +...|.+++|+|++++|+    +|+.|+.|++||+.........     ..........+.+|...|.+++|+|+ +.++
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l  165 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQ-----QKRPFAYHKLLKDAGGMVIDMKWNPTVPSMV  165 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCS-----SCCCSEEEECCCSGGGSEEEEEECSSCTTEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcC-----CcceeeeeeccCCCCCceEEEEECCCCCCEE
Confidence            567899999999999999    7888999999998743100000     00011124455678999999999998 8899


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCC----CeeeE
Q psy3640         426 ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSN----EVSKV  501 (616)
Q Consensus       426 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~i  501 (616)
                      ++++.||.|++||++++........|...|.+++|+|+|++|++++.||.|++||.+.  .....+..+..    ....+
T Consensus       166 as~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~v  243 (434)
T 2oit_A          166 AVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL--QEKKVIPCPPFYESDHPVRV  243 (434)
T ss_dssp             EEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC--CEEEEECCCTTCCTTSCEEE
T ss_pred             EEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC--cccccccCCcccCCCCceeE
Confidence            9999999999999999987777777889999999999999999999999999999983  22223332222    23478


Q ss_pred             EEEEEcCCCCEEEEEe-CCC------cEEEEecCCce----EEeEEee-------ccccCEEEEEEecCCCEEEEEEC-C
Q psy3640         502 LDIAFDYSGSKLATAS-SDQ------TAKLWTVGGAV----ELLQTFY-------GHSNEVSKVSFHPTGKLVLSGSQ-D  562 (616)
Q Consensus       502 ~~~~~s~~~~~l~~~~-~dg------~i~vwd~~~~~----~~~~~~~-------~h~~~v~~l~~spdg~~l~s~s~-d  562 (616)
                      .+++|++++.++++.+ .+|      .+++|++....    .....+.       +...+-..+.+-++.+++++++. .
T Consensus       244 ~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s  323 (434)
T 2oit_A          244 LDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAS  323 (434)
T ss_dssp             EEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTC
T ss_pred             EEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCC
Confidence            9999999888876543 343      38999987531    2222222       12223333444477777766654 3


Q ss_pred             CcEEEecCCcC--ee-ee--------Eec----cCcccEEEEEEe---------------eCCCEEEEeeCCCcEEEccc
Q psy3640         563 TTCRLWSTESG--EC-IQ--------VLK----AHEDDVFSCGFN---------------YNGDTIITASKDNTCCIWRS  612 (616)
Q Consensus       563 g~i~iwd~~~~--~~-~~--------~~~----~h~~~V~~l~~s---------------~~~~~l~t~s~Dg~i~vW~~  612 (616)
                      +.|.|......  .. ..        .++    ........+++.               |--..|..-+.||.+..|.+
T Consensus       324 ~dv~vl~~~~~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~  403 (434)
T 2oit_A          324 TEVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYM  403 (434)
T ss_dssp             SBCEEEEECTTSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEE
T ss_pred             CceeEEEecCCCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEE
Confidence            33555543221  00 00        110    011112233331               12357888999999999987


Q ss_pred             CC
Q psy3640         613 MN  614 (616)
Q Consensus       613 ~~  614 (616)
                      -+
T Consensus       404 ~~  405 (434)
T 2oit_A          404 IN  405 (434)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.83  E-value=8.1e-18  Score=168.41  Aligned_cols=267  Identities=12%  Similarity=0.050  Sum_probs=193.2

Q ss_pred             CCCCEEEEEE------CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeCCC
Q psy3640         197 KFGTRCLTGS------YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDIKS  259 (616)
Q Consensus       197 ~~g~~lasgs------~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~~~  259 (616)
                      ++++++.+..      .|+.|.+||..+++.+..+..+..+  .++|+||++++ ++.          .++.|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            3667776654      3679999999999999888877666  89999999966 443          367899999999


Q ss_pred             CceEEEeeCC------CCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEE-eeece-eeEEEcCCC-CEEEEE
Q psy3640         260 GHEICTYRGH------QNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQT-YRGHS-AEVTFSPDQ-STFCSC  328 (616)
Q Consensus       260 ~~~~~~~~~h------~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~-~~v~~~~~~-~~l~~~  328 (616)
                      ++.+..+...      ......++++ |++++|+++..  +++|.+||+.+++.+.. +.... ..+.+.|++ ..+++.
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEE
Confidence            9988887632      3456788999 88999998874  58999999999988877 54322 225567765 678888


Q ss_pred             eCCCcEEEEECCC-CceeEEe------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCc
Q psy3640         329 SMDHTARIFNTNS-GQEMHTL------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK  401 (616)
Q Consensus       329 ~~dg~i~i~d~~~-~~~~~~~------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  401 (616)
                      +.||.+.+|+... ++.....      .....++ .+.+++++..++..+.++.+.++|+....              ..
T Consensus       170 ~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~--------------~~  234 (361)
T 2oiz_A          170 CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDE--------------VK  234 (361)
T ss_dssp             ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSS--------------CE
T ss_pred             CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCC--------------ce
Confidence            9999999999865 5544221      1222222 23345677777778889999999985211              00


Q ss_pred             ceEEEec----------CccceeEEEEccCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640         402 PIHILTG----------HSQEISNCLFNFSNSMIASSSL-----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAF  460 (616)
Q Consensus       402 ~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  460 (616)
                      ....+..          .......++++++++.++++..           .+.|.+||+.+++.+.++..+.  +.+++|
T Consensus       235 ~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~  312 (361)
T 2oiz_A          235 VDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTI  312 (361)
T ss_dssp             EEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEE
T ss_pred             ecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEE
Confidence            0011000          0011223688999888777653           3479999999999999998776  899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         461 DYSGSKLATASSDQTANLWTVGGA  484 (616)
Q Consensus       461 ~~~~~~l~~~~~dg~i~iwd~~~~  484 (616)
                      +|+|++|++++. +.|.+||..+.
T Consensus       313 spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          313 DQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             ETTTTEEEEECS-SCEEEEECSSS
T ss_pred             CCCCCEEEEeCC-CeEEEEECCCC
Confidence            999999998876 89999998775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.81  E-value=9e-19  Score=178.25  Aligned_cols=312  Identities=12%  Similarity=0.027  Sum_probs=210.8

Q ss_pred             EEEeCCCCceEEEeeCCCCc-----EEEEEEeCCCCCEEEEEECC---CeEEEEeCCCcceeEEeeecee---eEEEcCC
Q psy3640         253 KLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGDKILTGSFD---KTLKLWASAKEECIQTYRGHSA---EVTFSPD  321 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~~~-----V~~l~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~  321 (616)
                      ..+|..+++.+..+..+...     +..++|+ |++++|+.....   ..|.+||+.+++......+...   .+.|+|+
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~S-pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd   91 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFT-QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD   91 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCC-CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence            34577888877777665443     6778899 889998877653   3788889988876544433322   2579999


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCc
Q psy3640         322 QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHK  401 (616)
Q Consensus       322 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  401 (616)
                      ++.|+.++.++.|++||+.+++.......+..      |+++|+.|+..+.+....+|..                    
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~------~~~~g~~l~~~~~~~~~~~~~~--------------------  145 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEE------WKGYGTWVANSDCTKLVGIEIL--------------------  145 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTT------EEEEEEEEECTTSSEEEEEEEE--------------------
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEecccc------cCCCCCEEEeccCCcccccccc--------------------
Confidence            99999999999999999998876655554433      5666766766555544444431                    


Q ss_pred             ceEEEecCccceeEEEEccCCCEEEEE-----eCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC-CCCEEEEEeCC--
Q psy3640         402 PIHILTGHSQEISNCLFNFSNSMIASS-----SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY-SGSKLATASSD--  473 (616)
Q Consensus       402 ~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~d--  473 (616)
                                   .+.++|+++.++..     ..+..|.+||+.+++..... .+...+..+.|+| ++..++..+.+  
T Consensus       146 -------------~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~  211 (396)
T 3c5m_A          146 -------------KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPH  211 (396)
T ss_dssp             -------------GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCS
T ss_pred             -------------ccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCC
Confidence                         12345666665543     34568999999988765444 4667899999999 78877776554  


Q ss_pred             ----CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceEEeEEeeccccCE
Q psy3640         474 ----QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAVELLQTFYGHSNEV  544 (616)
Q Consensus       474 ----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~h~~~v  544 (616)
                          ..|.+|++.+...  ..+.. ......+..++|+|+|++|+.++.+     +.|.+||+.++.... .. ... ..
T Consensus       212 ~~~~~~l~~~d~~~~~~--~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~-~~~-~~  285 (396)
T 3c5m_A          212 DLVDARMWLVNEDGSNV--RKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VM-VMP-PC  285 (396)
T ss_dssp             SSCSCCCEEEETTSCCC--EESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EE-ECC-SE
T ss_pred             CCCCceEEEEECCCCce--eEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-ee-eCC-CC
Confidence                3588888765421  11111 1113357788999999988777554     449999997753222 11 111 23


Q ss_pred             EEEEEec-CCCEEEEEE----------------CCCcEEEecCCcCeeeeEeccCcc-----------cEEEEEEeeCCC
Q psy3640         545 SKVSFHP-TGKLVLSGS----------------QDTTCRLWSTESGECIQVLKAHED-----------DVFSCGFNYNGD  596 (616)
Q Consensus       545 ~~l~~sp-dg~~l~s~s----------------~dg~i~iwd~~~~~~~~~~~~h~~-----------~V~~l~~s~~~~  596 (616)
                      . +.|+| ||+++++++                .++.|++||+.+++.. .+..+..           .+..++|+|||+
T Consensus       286 ~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~  363 (396)
T 3c5m_A          286 S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD  363 (396)
T ss_dssp             E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS
T ss_pred             C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCC
Confidence            3 89999 999888765                3478999999888754 4444443           256678999999


Q ss_pred             EEEEeeC-CCcEEEcccC
Q psy3640         597 TIITASK-DNTCCIWRSM  613 (616)
Q Consensus       597 ~l~t~s~-Dg~i~vW~~~  613 (616)
                      .|+.++. ++...+|.+.
T Consensus       364 ~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          364 GVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             EEEEEECTTSSCEEEEEE
T ss_pred             eEEEEecCCCCceEEEEE
Confidence            8887764 5666666543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=5.8e-17  Score=162.96  Aligned_cols=269  Identities=7%  Similarity=0.057  Sum_probs=180.7

Q ss_pred             EEEEECC--CcEEEEeC--CCCceEE--Eee-CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC-CcceeEEee----
Q psy3640         243 CLTGSYD--RTCKLWDI--KSGHEIC--TYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA-KEECIQTYR----  310 (616)
Q Consensus       243 lls~s~d--~~I~iwd~--~~~~~~~--~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~----  310 (616)
                      +++|+..  +.|.+|++  .+++...  ... .....+..++|+ |+++++++++.+ .|.+|++. +++......    
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~   82 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG   82 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence            3455543  56877765  5665432  221 234467889999 889999999988 99999997 776544322    


Q ss_pred             eceeeEEEcCCCCE--EEEEe-------------CCCcEEEEECC-CCceeEEee----cCCcCEEEEEEcCCCCEEEEE
Q psy3640         311 GHSAEVTFSPDQST--FCSCS-------------MDHTARIFNTN-SGQEMHTLK----AHTGPVISLQFSSDRNMLITG  370 (616)
Q Consensus       311 ~~~~~v~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~----~~~~~v~~l~~~~~~~~l~~g  370 (616)
                      +....++++|++++  ++++.             .+|.+.+|++. .++....+.    .+...+.+++|+|+|++++++
T Consensus        83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~  162 (365)
T 1jof_A           83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA  162 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred             CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence            22334689999995  44442             68999999997 466544443    245678999999999988877


Q ss_pred             EC-CCcEEEEecc-cccCCcccccccccccCCcceEEEe--cCccceeEEEEccCCCEEEEEeC-CCcEEEEeCC--CCe
Q psy3640         371 SF-DSSIVVWDIQ-YQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFSNSMIASSSL-DGTAKLWDVR--TMC  443 (616)
Q Consensus       371 ~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~--~~~  443 (616)
                      .. ++.|++|++. ..              ....+..+.  .+...+..++|+|+++++++++. ++.+.+|++.  +++
T Consensus       163 ~~~~~~v~~~~~~~~g--------------~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~  228 (365)
T 1jof_A          163 DLTANKLWTHRKLASG--------------EVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM  228 (365)
T ss_dssp             ETTTTEEEEEEECTTS--------------CEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             cCCCCEEEEEEECCCC--------------CEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence            64 6799999986 11              111122222  23556889999999999888775 6889998764  555


Q ss_pred             EE---EEeec-------CCC------CEEEEE-EcCCCCEEEEEeCCC------cEEEEecCCceeeee---EEeccCCC
Q psy3640         444 CF---YTLKN-------HED------EVLDIA-FDYSGSKLATASSDQ------TANLWTVGGAVELLQ---TFYGHSNE  497 (616)
Q Consensus       444 ~~---~~~~~-------~~~------~v~~l~-~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~---~~~~~~~~  497 (616)
                      ..   ..+..       +..      .+..++ |+|+|++|+++..+.      .|.+|++........   ....+.. 
T Consensus       229 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-  307 (365)
T 1jof_A          229 PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-  307 (365)
T ss_dssp             EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-
T ss_pred             EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-
Confidence            42   22221       111      488999 999999988776433      799999863222221   1211211 


Q ss_pred             eeeEEEEEEcC---CCCEEEEEeCC-CcEEEEecCCc
Q psy3640         498 VSKVLDIAFDY---SGSKLATASSD-QTAKLWTVGGA  530 (616)
Q Consensus       498 ~~~i~~~~~s~---~~~~l~~~~~d-g~i~vwd~~~~  530 (616)
                        ....++|+|   +|++|++++.+ +.|.+|+++..
T Consensus       308 --~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          308 --GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             --CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             --CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence              123578999   89999999875 89999998764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=3.6e-18  Score=186.41  Aligned_cols=285  Identities=9%  Similarity=-0.064  Sum_probs=196.8

Q ss_pred             eecccCCcceEEEEECCCCCEEEEE--ECCCcEEEEECCCCcEEEEEeccCCcEE---------EEEEc--CCCCE-EEE
Q psy3640         181 KMLKSHLLPLTNITFDKFGTRCLTG--SYDRTCKLWDIKSGHEICTYRGHQNVVY---------AVAFS--EPYGC-LTG  246 (616)
Q Consensus       181 ~~l~~h~~~i~~v~~s~~g~~lasg--s~dg~i~iwd~~~~~~~~~~~~h~~~I~---------~l~fs--~~~~l-ls~  246 (616)
                      ..+.+|...+..++|++++-++++.  +.++...||....+.....+..|...+.         ...|+  ||++. ++.
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            3456799999999999887777777  5588999999765666677777777766         66666  99987 755


Q ss_pred             ECC--CcEEEEeCC--CCceEEEeeC-----CCCcEEEEEEeCCCCCEEEEEECC----------CeEEEEeCCC-----
Q psy3640         247 SYD--RTCKLWDIK--SGHEICTYRG-----HQNVVYAVAFSEPYGDKILTGSFD----------KTLKLWASAK-----  302 (616)
Q Consensus       247 s~d--~~I~iwd~~--~~~~~~~~~~-----h~~~V~~l~~~~~~~~~l~s~s~d----------g~i~iwd~~~-----  302 (616)
                      +.+  ..|.+|++.  .......+..     |...+..++|+ |+++.|++++.+          ..|.+||+.+     
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            544  556666665  2033455655     67789999999 899999998877          5899999988     


Q ss_pred             -cceeEEe-eec--eeeEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeEEeecCCcCEEEEEEcCCCCE
Q psy3640         303 -EECIQTY-RGH--SAEVTFSPDQSTFCSCSMD--------HTARIFNTN-SG---QEMHTLKAHTGPVISLQFSSDRNM  366 (616)
Q Consensus       303 -~~~~~~~-~~~--~~~v~~~~~~~~l~~~~~d--------g~i~i~d~~-~~---~~~~~~~~~~~~v~~l~~~~~~~~  366 (616)
                       ++..... .++  ...++|+|||+.|+.++.+        ..|.+||+. ++   +.......|...+..++|+|||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             5543333 222  2345899999999987755        379999998 56   444444456788999999999998


Q ss_pred             EEEEECCCc--EEEEecccccCCcccccccccccCCcceEEEecCcc--------ceeEEEEccCCCEEEEEeCCCcEEE
Q psy3640         367 LITGSFDSS--IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ--------EISNCLFNFSNSMIASSSLDGTAKL  436 (616)
Q Consensus       367 l~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~~l~~~~~dg~i~i  436 (616)
                      +++++.++.  |.+||+..                .........+..        .+..++|++++.++++++. +.+++
T Consensus       256 ~~~~~~~~~~~l~~~~~~~----------------~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l  318 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPAT----------------GAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVL  318 (662)
T ss_dssp             EEEECTTSSCEEEEECTTT----------------CCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEE
T ss_pred             EEEECCCCCeEEEEEECCC----------------CceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEE
Confidence            888888884  45555421                111111111111        1457889999999999998 99999


Q ss_pred             E--eCCCCeEEEEeecCCCCEEEE-EEcCCCCEEEEEeCCCc--EEEEecCCc
Q psy3640         437 W--DVRTMCCFYTLKNHEDEVLDI-AFDYSGSKLATASSDQT--ANLWTVGGA  484 (616)
Q Consensus       437 w--d~~~~~~~~~~~~~~~~v~~l-~~~~~~~~l~~~~~dg~--i~iwd~~~~  484 (616)
                      |  |+.+++ +..+..+...+..+ +++.+.-.+++++.+..  +..+++.++
T Consensus       319 ~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g  370 (662)
T 3azo_A          319 GILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG  370 (662)
T ss_dssp             EEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            8  666665 56777777777777 55444334444555544  444555444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=5.8e-19  Score=179.70  Aligned_cols=317  Identities=10%  Similarity=0.028  Sum_probs=208.5

Q ss_pred             EEEECCCCcEEEEEeccCCc-----EEEEEEcCCCCEE-EEEC---CCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCC
Q psy3640         212 KLWDIKSGHEICTYRGHQNV-----VYAVAFSEPYGCL-TGSY---DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY  282 (616)
Q Consensus       212 ~iwd~~~~~~~~~~~~h~~~-----I~~l~fs~~~~ll-s~s~---d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~  282 (616)
                      ...|..+++.+..+..+...     +..++|+|||+.+ ....   +..|.+||+.+++......++......+.|+ |+
T Consensus        13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~s-pd   91 (396)
T 3c5m_A           13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIS-TD   91 (396)
T ss_dssp             EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEEC-TT
T ss_pred             eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceEC-CC
Confidence            45578888888888765444     7788999999965 3332   2478999999887654444333223337788 89


Q ss_pred             CCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcC
Q psy3640         283 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS  362 (616)
Q Consensus       283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~  362 (616)
                      ++.|+.++.++.|.+||+.+++.......+..   +++++..++....++...+|.                 ....|+|
T Consensus        92 g~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~g~~l~~~~~~~~~~~~~-----------------~~~~~sp  151 (396)
T 3c5m_A           92 ERAFFYVKNELNLMKVDLETLEEQVIYTVDEE---WKGYGTWVANSDCTKLVGIEI-----------------LKRDWQP  151 (396)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECCTT---EEEEEEEEECTTSSEEEEEEE-----------------EGGGCCC
T ss_pred             CCEEEEEEcCCcEEEEECCCCCcEEEEecccc---cCCCCCEEEeccCCccccccc-----------------cccccCC
Confidence            99999999999999999998876655443322   556666666555444433332                 1245788


Q ss_pred             CCCEEEEE-----ECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCC-----
Q psy3640         363 DRNMLITG-----SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLD-----  431 (616)
Q Consensus       363 ~~~~l~~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d-----  431 (616)
                      +++.++..     ..+..|.+||+.                .... ..+..+...+..+.|+| ++..++..+.+     
T Consensus       152 dg~~~~~~~~~~~~~~~~l~~~d~~----------------~g~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~  214 (396)
T 3c5m_A          152 LTSWEKFAEFYHTNPTCRLIKVDIE----------------TGEL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLV  214 (396)
T ss_dssp             CCSHHHHHHHHHTCCCEEEEEEETT----------------TCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred             CCcceeeeeeccCCCcceEEEEECC----------------CCcE-EeeccCCcccccceECCCCCCEEEEEecCCCCCC
Confidence            88877654     356789999986                3332 23334566788999999 78877766543     


Q ss_pred             -CcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceeeeeEEeccCCCeeeEEEE
Q psy3640         432 -GTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGAVELLQTFYGHSNEVSKVLDI  504 (616)
Q Consensus       432 -g~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~  504 (616)
                       ..|.+||+..++........ ...+..++|+|+|+.|+.++.+     +.|.+||+.++.....  .....    .. .
T Consensus       215 ~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~----~~-~  287 (396)
T 3c5m_A          215 DARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV--MVMPP----CS-H  287 (396)
T ss_dssp             SCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE--EECCS----EE-E
T ss_pred             CceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe--eeCCC----CC-C
Confidence             36888998766533322211 2357889999999988776544     3499999976533211  11111    12 7


Q ss_pred             EEcC-CCCEEEEEe----------------CCCcEEEEecCCceEEeEEeecccc-----------CEEEEEEecCCCEE
Q psy3640         505 AFDY-SGSKLATAS----------------SDQTAKLWTVGGAVELLQTFYGHSN-----------EVSKVSFHPTGKLV  556 (616)
Q Consensus       505 ~~s~-~~~~l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~h~~-----------~v~~l~~spdg~~l  556 (616)
                      .|+| +|+++++++                .++.|.+||+.++..  ..+..+..           .+..++|+|||+.|
T Consensus       288 ~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  365 (396)
T 3c5m_A          288 LMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV  365 (396)
T ss_dssp             EEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred             CccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccCCCCccccccccccCCCCCceEccCCCeE
Confidence            8999 999888765                347899999977532  23334443           25678999999988


Q ss_pred             EEEEC-CCcEEEe--cCCcCee
Q psy3640         557 LSGSQ-DTTCRLW--STESGEC  575 (616)
Q Consensus       557 ~s~s~-dg~i~iw--d~~~~~~  575 (616)
                      +.++. ++...+|  ++.+++.
T Consensus       366 ~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          366 LFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             EEEECTTSSCEEEEEECCTTCC
T ss_pred             EEEecCCCCceEEEEEEccccc
Confidence            87765 4554555  4444443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.78  E-value=9.2e-15  Score=153.66  Aligned_cols=323  Identities=12%  Similarity=0.043  Sum_probs=229.7

Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCC--CCceEEEeeCCCCc
Q psy3640         196 DKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIK--SGHEICTYRGHQNV  272 (616)
Q Consensus       196 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~--~~~~~~~~~~h~~~  272 (616)
                      +|.+.++++...+++|.++|..+++.+.++... ..+..+.|+||++++ +++.++.|.+||+.  +++.+..+.... .
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~  241 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E  241 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C
Confidence            355566777788999999999999999888743 356689999999965 78899999999996  888888887543 4


Q ss_pred             EEEEEEeC---CCCCEEEEEEC-CCeEEEEeCCCcceeEEeeec--------------eeeEEEcCCCCEEE-EEeCCCc
Q psy3640         273 VYAVAFSE---PYGDKILTGSF-DKTLKLWASAKEECIQTYRGH--------------SAEVTFSPDQSTFC-SCSMDHT  333 (616)
Q Consensus       273 V~~l~~~~---~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~--------------~~~v~~~~~~~~l~-~~~~dg~  333 (616)
                      ...++|++   |+++++++++. ++++.++|..+.+.+..+...              ...+..++++..++ ....+|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            67999996   68888777665 599999999999988876522              23456777766554 4455699


Q ss_pred             EEEEECCCCceeEEee-cCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEec---
Q psy3640         334 ARIFNTNSGQEMHTLK-AHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG---  408 (616)
Q Consensus       334 i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  408 (616)
                      |.++|..+.+...... ........+.|+|++++++++. .++.|.++|..                +.+.......   
T Consensus       322 v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~----------------t~kl~~~i~vgg~  385 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK----------------EGKLVAIEDTGGQ  385 (567)
T ss_dssp             EEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT----------------TTEEEEEEECSSS
T ss_pred             EEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECC----------------CCcEEEEEeccCc
Confidence            9999987754332211 2334567889999999987776 47899999997                4333333322   


Q ss_pred             --CccceeEEEEccCCCEEE-EEe-CCCcEEEEeCCC-------CeEEEEeecCCCCEEEEEEcCCCCEEEEEeC-----
Q psy3640         409 --HSQEISNCLFNFSNSMIA-SSS-LDGTAKLWDVRT-------MCCFYTLKNHEDEVLDIAFDYSGSKLATASS-----  472 (616)
Q Consensus       409 --~~~~i~~~~~~~~~~~l~-~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----  472 (616)
                        |.+.-.. .++|++..+. ++. .++.|.++|..+       .+.++++......-..+..+|+++++.+...     
T Consensus       386 ~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~  464 (567)
T 1qks_A          386 TPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA  464 (567)
T ss_dssp             SBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred             CCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence              2211111 2577755444 443 458999999987       6778888765444455788999999998763     


Q ss_pred             --CCcEEEEecCCc-----eeeeeEEe-----ccCCCeeeEEEEEEcCCCCEEEEEeC-----CCcEEEEecCCceEEeE
Q psy3640         473 --DQTANLWTVGGA-----VELLQTFY-----GHSNEVSKVLDIAFDYSGSKLATASS-----DQTAKLWTVGGAVELLQ  535 (616)
Q Consensus       473 --dg~i~iwd~~~~-----~~~~~~~~-----~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~  535 (616)
                        .++|.++|+.+.     ......+.     ........+..+.|+++|+.+.++..     ++.|.|+|..+. ++..
T Consensus       465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~-~~~~  543 (567)
T 1qks_A          465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL-ELKH  543 (567)
T ss_dssp             HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT-EEEE
T ss_pred             ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc-eEEE
Confidence              359999999765     22222221     11223456889999999999887743     799999999884 5555


Q ss_pred             Eee
Q psy3640         536 TFY  538 (616)
Q Consensus       536 ~~~  538 (616)
                      .+.
T Consensus       544 ~i~  546 (567)
T 1qks_A          544 VIK  546 (567)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            554

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.77  E-value=1.5e-17  Score=181.58  Aligned_cols=302  Identities=10%  Similarity=-0.037  Sum_probs=196.3

Q ss_pred             EeeCCCCcEEEEEEeCCCCCEEEEE--ECCCeEEEEeCCCcceeEEeeecee------------eEEEc--CCCCE-EEE
Q psy3640         265 TYRGHQNVVYAVAFSEPYGDKILTG--SFDKTLKLWASAKEECIQTYRGHSA------------EVTFS--PDQST-FCS  327 (616)
Q Consensus       265 ~~~~h~~~V~~l~~~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~~------------~v~~~--~~~~~-l~~  327 (616)
                      .+.+|...+..++++ ++.-.++..  +.++...+|....+.....+..+..            ...++  ||++. |+.
T Consensus        18 ~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           18 LVASRSGRPACVGAV-GDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHHTCSCCEEEEEE-TTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HHhhcCCccceeEEc-CCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            345688899999999 555455555  4478899998654444445443321            23454  99998 776


Q ss_pred             EeC-CCcEEEEECC--CCceeEEeec-----CCcCEEEEEEcCCCCEEEEEECC----------CcEEEEecccccCCcc
Q psy3640         328 CSM-DHTARIFNTN--SGQEMHTLKA-----HTGPVISLQFSSDRNMLITGSFD----------SSIVVWDIQYQFGTRN  389 (616)
Q Consensus       328 ~~~-dg~i~i~d~~--~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~g~~d----------g~i~iwd~~~~~~~~~  389 (616)
                      ++. +..|.++++.  .......+..     |...+.+++|+|||+.|++++.+          ..|++||+......  
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--  174 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA--  174 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT--
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc--
Confidence            654 5667777765  2033455555     56778999999999999998876          57999998620000  


Q ss_pred             cccccccccCCcceEEEe-cCccceeEEEEccCCCEEEEEeCC--------CcEEEEeCC-CC---eEEEEeecCCCCEE
Q psy3640         390 AYAESTYRASHKPIHILT-GHSQEISNCLFNFSNSMIASSSLD--------GTAKLWDVR-TM---CCFYTLKNHEDEVL  456 (616)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~---~~~~~~~~~~~~v~  456 (616)
                               .......+. .+...+..++|+|||+.|+.++.+        ..|++||+. ++   +.......+...+.
T Consensus       175 ---------~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~  245 (662)
T 3azo_A          175 ---------DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA  245 (662)
T ss_dssp             ---------CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred             ---------cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence                     002223344 455677889999999999988755        379999998 56   44444445578899


Q ss_pred             EEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeEEeccCCCe-----eeEEEEEEcCCCCEEEEEeCCCcEEEE--ec
Q psy3640         457 DIAFDYSGSKLATASSDQ--TANLWTVGGAVELLQTFYGHSNEV-----SKVLDIAFDYSGSKLATASSDQTAKLW--TV  527 (616)
Q Consensus       457 ~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~vw--d~  527 (616)
                      .++|+|+|+++++++.++  .|.+|+..++. .......+....     ..+..++++|++++++++.. +.+++|  |.
T Consensus       246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~  323 (662)
T 3azo_A          246 QAEWAPDGSLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDP  323 (662)
T ss_dssp             EEEECTTSCEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEET
T ss_pred             ceEECCCCeEEEEECCCCCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEEC
Confidence            999999999888888888  55555654432 211111111110     01345889999999999999 999999  54


Q ss_pred             CCceEEeEEeeccccCEEEE-EEecCCCEEEEEECCC--cEEEecCCcCeeeeEeccC
Q psy3640         528 GGAVELLQTFYGHSNEVSKV-SFHPTGKLVLSGSQDT--TCRLWSTESGECIQVLKAH  582 (616)
Q Consensus       528 ~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h  582 (616)
                      .++  ....+..|...+..+ +++++.-++++++.+.  .|.+||+.+++.......|
T Consensus       324 ~~~--~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~  379 (662)
T 3azo_A          324 ESG--ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH  379 (662)
T ss_dssp             TTT--EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred             CCC--cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence            443  256677777777776 4443332344455554  4556677677655443444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=4.8e-16  Score=150.53  Aligned_cols=240  Identities=11%  Similarity=0.215  Sum_probs=177.4

Q ss_pred             cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe------cCccceeEEEE-ccCC
Q psy3640         350 AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT------GHSQEISNCLF-NFSN  422 (616)
Q Consensus       350 ~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~-~~~~  422 (616)
                      ++-..+.+++++++++++++...++.|.+||..                 ......+.      .+...+..+++ .+++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-----------------g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g   89 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-----------------GRFKFQFGECGKRDSQLLYPNRVAVVRNSG   89 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-----------------SCEEEEECCBSSSTTCBSSEEEEEEETTTT
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-----------------CcEEEEecccCCCcccccCceEEEEEcCCC
Confidence            345678999999999988888889999999974                 12222221      23356788888 4667


Q ss_pred             CEEEEEeC-CCcEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeee
Q psy3640         423 SMIASSSL-DGTAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK  500 (616)
Q Consensus       423 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  500 (616)
                      .++++... ++.|.+|| .+++.+..+.. +...+.+++++++|+++++...++.|.+|+....  ....+.. ......
T Consensus        90 ~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~-~~~~~~  165 (286)
T 1q7f_A           90 DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGC-SKHLEF  165 (286)
T ss_dssp             EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEEC-TTTCSS
T ss_pred             eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCC-CCccCC
Confidence            66666543 78999999 56766666643 3457899999999998888778899999997543  2222221 122234


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc--ccCEEEEEEecCCCEEEEEECCC-cEEEecCCcCeeee
Q psy3640         501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH--SNEVSKVSFHPTGKLVLSGSQDT-TCRLWSTESGECIQ  577 (616)
Q Consensus       501 i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h--~~~v~~l~~spdg~~l~s~s~dg-~i~iwd~~~~~~~~  577 (616)
                      ...++++++++++++...++.|.+|+....  .+..+..+  ...+..++++|+|+++++...++ .|.+|+. +++.+.
T Consensus       166 p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~  242 (286)
T 1q7f_A          166 PNGVVVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  242 (286)
T ss_dssp             EEEEEECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             cEEEEECCCCCEEEEECCCCEEEEEcCCCC--EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence            678999999998888888999999998653  33344332  36789999999999888887776 9999995 577777


Q ss_pred             EeccCcc--cEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         578 VLKAHED--DVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       578 ~~~~h~~--~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      .+..+..  .+.+++++|+|+++++ +.|++|++|++..
T Consensus       243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            7765443  4789999999987777 6799999999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=1.4e-14  Score=152.35  Aligned_cols=318  Identities=11%  Similarity=0.025  Sum_probs=227.5

Q ss_pred             EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCC--CcceeEEeeec--eeeEEE
Q psy3640         243 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASA--KEECIQTYRGH--SAEVTF  318 (616)
Q Consensus       243 lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~--~~~v~~  318 (616)
                      +++...+++|.++|..+++.+..+... ..+..+.|+ |+++++++++.|+.|.+||+.  +++.+.++...  ...+++
T Consensus       170 ~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~S-pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~  247 (567)
T 1qks_A          170 SVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLS-ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIET  247 (567)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEE
T ss_pred             EEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEEC-CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEE
Confidence            446678899999999999999888743 356789999 899999999999999999996  77777777533  345789


Q ss_pred             c----CCCCEEEEEeC-CCcEEEEECCCCceeEEeecC----------Cc-CEEEEEEcCCCCEEEE-EECCCcEEEEec
Q psy3640         319 S----PDQSTFCSCSM-DHTARIFNTNSGQEMHTLKAH----------TG-PVISLQFSSDRNMLIT-GSFDSSIVVWDI  381 (616)
Q Consensus       319 ~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~----------~~-~v~~l~~~~~~~~l~~-g~~dg~i~iwd~  381 (616)
                      +    |++++++++.. ++.+.++|..+.+.+..+...          .. .+..+..++++..+++ ...+|.|.++|.
T Consensus       248 s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~  327 (567)
T 1qks_A          248 SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY  327 (567)
T ss_dssp             CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred             ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence            9    69998887765 589999999999988876532          12 6788888888665444 455699999998


Q ss_pred             ccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeec-----CCCCE
Q psy3640         382 QYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKN-----HEDEV  455 (616)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-----~~~~v  455 (616)
                      ...               ................+.|+|++++++++. .++.|.++|+.+++.+..+..     |.+.-
T Consensus       328 ~~~---------------~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g  392 (567)
T 1qks_A          328 TDL---------------NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG  392 (567)
T ss_dssp             TCS---------------SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred             CCC---------------ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc
Confidence            621               011111112334456788999999887766 568899999999988777654     22222


Q ss_pred             EEEEEcCCCCEEE-EEe-CCCcEEEEecCCc------eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-------CC
Q psy3640         456 LDIAFDYSGSKLA-TAS-SDQTANLWTVGGA------VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-------DQ  520 (616)
Q Consensus       456 ~~l~~~~~~~~l~-~~~-~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg  520 (616)
                      ..+ ++|++..++ +.. .++.|.++|....      .+..+.+......   -..+..+|+++++.+...       .+
T Consensus       393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g---~~~i~~~p~~~~l~v~~~~~~~~~~~~  468 (567)
T 1qks_A          393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG---SLFIKTHPNSQYLYVDATLNPEAEISG  468 (567)
T ss_dssp             EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---CCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred             eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC---CEEEEeCCCCCeEEEecCCCCCcccCc
Confidence            222 578755544 443 4689999998762      2334444433211   123678999999998774       45


Q ss_pred             cEEEEecCCc-----eEEeEEee--------ccccCEEEEEEecCCCEEEEEE-----CCCcEEEecCCcCeeeeEecc
Q psy3640         521 TAKLWTVGGA-----VELLQTFY--------GHSNEVSKVSFHPTGKLVLSGS-----QDTTCRLWSTESGECIQVLKA  581 (616)
Q Consensus       521 ~i~vwd~~~~-----~~~~~~~~--------~h~~~v~~l~~spdg~~l~s~s-----~dg~i~iwd~~~~~~~~~~~~  581 (616)
                      .|.++|+.+.     ......+.        .-...+..+.|+|+|+.+..+.     .++.|.|+|.++++++.+++.
T Consensus       469 ~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~  547 (567)
T 1qks_A          469 SVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD  547 (567)
T ss_dssp             CEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred             eEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence            9999999764     22222221        1235788999999999887763     368999999999999988875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.76  E-value=1.3e-15  Score=147.55  Aligned_cols=236  Identities=11%  Similarity=0.184  Sum_probs=180.7

Q ss_pred             ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe------ccCCcEEEEEE-cCCCCEEEEEC--CCcEEE
Q psy3640         184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR------GHQNVVYAVAF-SEPYGCLTGSY--DRTCKL  254 (616)
Q Consensus       184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~------~h~~~I~~l~f-s~~~~lls~s~--d~~I~i  254 (616)
                      .+|...+.+++++|+|+++++.+.++.|.+||.. ++.+..+.      +|...+..+++ .+++.++++..  ++.|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4677789999999999988888889999999987 66666664      24467899999 57787776653  899999


Q ss_pred             EeCCCCceEEEee-CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee-----ceeeEEEcCCCCEEEEE
Q psy3640         255 WDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG-----HSAEVTFSPDQSTFCSC  328 (616)
Q Consensus       255 wd~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~l~~~  328 (616)
                      || .+++.+..+. .+...+..+++. ++++.+++...++.|.+|+.. ++.+..+..     ....++++++++.+++.
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            99 6677776664 345678999998 778888887788999999964 555555531     24567999999988877


Q ss_pred             eCCCcEEEEECCCCceeEEeecC--CcCEEEEEEcCCCCEEEEEECCC-cEEEEecccccCCcccccccccccCCcceEE
Q psy3640         329 SMDHTARIFNTNSGQEMHTLKAH--TGPVISLQFSSDRNMLITGSFDS-SIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       329 ~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      ..++.|.+||.. ++.+..+..+  ...+..++++++|+++++...++ .|.+||..                 ...+..
T Consensus       182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-----------------g~~~~~  243 (286)
T 1q7f_A          182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-----------------GQLISA  243 (286)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-----------------SCEEEE
T ss_pred             CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-----------------CCEEEE
Confidence            788999999974 5666666433  35789999999999888887775 99999963                 333444


Q ss_pred             EecCc--cceeEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy3640         406 LTGHS--QEISNCLFNFSNSMIASSSLDGTAKLWDVRTM  442 (616)
Q Consensus       406 ~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  442 (616)
                      +..+.  ..+..++++++++++++ +.++.|++|+....
T Consensus       244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            44332  23678999999987776 67899999997653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=4.3e-16  Score=154.03  Aligned_cols=244  Identities=15%  Similarity=0.151  Sum_probs=180.1

Q ss_pred             CcCEEEEEEcCCCCEEEEEECC------------------------CcEEEEecccccCCcccccccccccCCcceEEEe
Q psy3640         352 TGPVISLQFSSDRNMLITGSFD------------------------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT  407 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (616)
                      -+.+.+++++|+|+++++...+                        +.|.+||..                .........
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----------------~g~~~~~~~   86 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN----------------NAEILQSSG   86 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT----------------TCCEEEEEC
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC----------------CCeEEeccC
Confidence            4578999999999999888777                        468888875                333333332


Q ss_pred             -cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe-EEEEee---------cCCCCEEEEEEcC-CCCEEEEEe-CCC
Q psy3640         408 -GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC-CFYTLK---------NHEDEVLDIAFDY-SGSKLATAS-SDQ  474 (616)
Q Consensus       408 -~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~l~~~~-~~~~l~~~~-~dg  474 (616)
                       .+......++++++++++++...++.|++||..... .+..+.         .+-.....++++| ++.++++.+ .++
T Consensus        87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~  166 (329)
T 3fvz_A           87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNS  166 (329)
T ss_dssp             TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred             CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence             334567889999999988888888999999986542 445542         3344689999999 788888876 689


Q ss_pred             cEEEEecCCceeeeeEEecc-------CCCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEe--eccccCE
Q psy3640         475 TANLWTVGGAVELLQTFYGH-------SNEVSKVLDIAFDYS-GSKLATASSDQTAKLWTVGGAVELLQTF--YGHSNEV  544 (616)
Q Consensus       475 ~i~iwd~~~~~~~~~~~~~~-------~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v  544 (616)
                      .|++|+....  ....+...       .........++++|+ +.++++...++.|++|+..++ +.+..+  ..+...+
T Consensus       167 ~I~~~~~~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~  243 (329)
T 3fvz_A          167 RIVQFSPSGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNV  243 (329)
T ss_dssp             EEEEECTTSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCE
T ss_pred             eEEEEcCCCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCc
Confidence            9999996543  22222211       122344678999999 777777778999999999853 444444  3456778


Q ss_pred             EEEEEec------CCCEEEEEECCCcEEEecCCcCeeeeEe---ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         545 SKVSFHP------TGKLVLSGSQDTTCRLWSTESGECIQVL---KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       545 ~~l~~sp------dg~~l~s~s~dg~i~iwd~~~~~~~~~~---~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      ..++|+|      +|+..++...+..|++|+..+++.+..+   .++...+..++++|+|.++++...++.|++|++..
T Consensus       244 ~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          244 FAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             ceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            9999999      3333333334558999999999999887   36777799999999998888888999999999864

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=5.9e-16  Score=153.06  Aligned_cols=237  Identities=9%  Similarity=0.073  Sum_probs=183.4

Q ss_pred             CCcceEEEEECCCCCEEEEEECC------------------------CcEEEEECCCCcEEEEEe-ccCCcEEEEEEcCC
Q psy3640         186 HLLPLTNITFDKFGTRCLTGSYD------------------------RTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEP  240 (616)
Q Consensus       186 h~~~i~~v~~s~~g~~lasgs~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~I~~l~fs~~  240 (616)
                      -...+.+++++|+|+++++.+.+                        ++|.+||..+++.+..+. ++-.....++++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence            45679999999999999988877                        479999999999877665 45568999999999


Q ss_pred             CCEE-EEECCCcEEEEeCCCCc-eEEEe---------eCCCCcEEEEEEeCCCCCEEEEEE-CCCeEEEEeCCCcceeEE
Q psy3640         241 YGCL-TGSYDRTCKLWDIKSGH-EICTY---------RGHQNVVYAVAFSEPYGDKILTGS-FDKTLKLWASAKEECIQT  308 (616)
Q Consensus       241 ~~ll-s~s~d~~I~iwd~~~~~-~~~~~---------~~h~~~V~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~  308 (616)
                      +.++ +...++.|++||..... .+..+         .++......+++++.++.++++.+ .++.|++|+ .+++.+..
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence            9966 55668999999986543 45555         345557899999943788888886 689999999 56666666


Q ss_pred             eeec-------------eeeEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEee--cCCcCEEEEEEcCCCCEEEE---
Q psy3640         309 YRGH-------------SAEVTFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTLK--AHTGPVISLQFSSDRNMLIT---  369 (616)
Q Consensus       309 ~~~~-------------~~~v~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~---  369 (616)
                      +...             ...++++|+ +..+++...++.|++||..+++.+..+.  .+...+.+++++| +..+++   
T Consensus       181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~  259 (329)
T 3fvz_A          181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK  259 (329)
T ss_dssp             ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred             eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence            5421             456799998 6667777788999999999899888874  4556788999999 333333   


Q ss_pred             ----EECCCcEEEEecccccCCcccccccccccCCcceEEE---ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy3640         370 ----GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL---TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR  440 (616)
Q Consensus       370 ----g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  440 (616)
                          ...+..|++|+..                ....+..+   ..+......++++++|.++++...++.|++|++.
T Consensus       260 ~~v~~~~~~~v~~~~~~----------------~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFS----------------SGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CCTTCSCCCCEEEEETT----------------TCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEeccCCCcEEEEEEcC----------------CCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence                2334589999986                55555555   3566678899999999888888889999999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=8.9e-16  Score=153.11  Aligned_cols=239  Identities=9%  Similarity=0.093  Sum_probs=166.9

Q ss_pred             CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC---Cc--EEEEecccccCCcccccccccccCCcceEE
Q psy3640         331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD---SS--IVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d---g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      ++.|.+||+.+++... +    ..+..++|+|||+.|+..+.+   +.  |.+|++.                .......
T Consensus        42 ~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~----------------~g~~~~l  100 (347)
T 2gop_A           42 ENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLE----------------TLSSKKI  100 (347)
T ss_dssp             EEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETT----------------TTEEEEE
T ss_pred             cceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECC----------------CCceEEE
Confidence            5678999998876533 3    567889999999999887754   33  6667764                3333333


Q ss_pred             EecCccceeEEEEccCCCEEEEEeCC---------------------------CcEEEEeCCCCeEEEEeecCCCCEEEE
Q psy3640         406 LTGHSQEISNCLFNFSNSMIASSSLD---------------------------GTAKLWDVRTMCCFYTLKNHEDEVLDI  458 (616)
Q Consensus       406 ~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~l  458 (616)
                      ...+ . +..+.|+|+++.|+.++.+                           ..|.+||+.+++.+..+.. . .+..+
T Consensus       101 ~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~  176 (347)
T 2gop_A          101 LEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSG  176 (347)
T ss_dssp             EEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEE
T ss_pred             EcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccccc
Confidence            3333 3 8899999999988887642                           5799999999887455554 3 78899


Q ss_pred             EEcCCCCEEEEEeCCC-------cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC--------CcEE
Q psy3640         459 AFDYSGSKLATASSDQ-------TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD--------QTAK  523 (616)
Q Consensus       459 ~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--------g~i~  523 (616)
                      +|+|+| +++++..++       ...+|.+.++ ... .+..+    ..+..+  +|+|++|+.++.+        ..|.
T Consensus       177 ~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~-~l~~~----~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~  247 (347)
T 2gop_A          177 IWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEE-KMFEK----VSFYAV--DSDGERILLYGKPEKKYMSEHNKLY  247 (347)
T ss_dssp             EEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEE-EEEEE----ESEEEE--EECSSCEEEEECCSSSCCCSSCEEE
T ss_pred             cCCCCe-EEEEEecccccccccccccEEEeCCC-ceE-EeccC----cceeeE--CCCCCEEEEEEccccCCccccceEE
Confidence            999999 777776542       3455544332 222 22222    223333  9999999887754        3677


Q ss_pred             EEecCCceEEeEEeeccccCEEE-EEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEee
Q psy3640         524 LWTVGGAVELLQTFYGHSNEVSK-VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITAS  602 (616)
Q Consensus       524 vwd~~~~~~~~~~~~~h~~~v~~-l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s  602 (616)
                      +||  + .........|...+.. +.|+ |+ ++++++.++.++|| +.+++....+ .+...|.+++|+|  .++++++
T Consensus       248 ~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          248 IYD--G-KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             EEC--S-SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEE
T ss_pred             EEC--C-CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEc
Confidence            888  3 2344444556677886 9999 88 99999999999999 8866654444 4577899999998  6788887


Q ss_pred             CCCcE-EEccc
Q psy3640         603 KDNTC-CIWRS  612 (616)
Q Consensus       603 ~Dg~i-~vW~~  612 (616)
                      .++.. .+|.+
T Consensus       319 ~~~~~~~l~~~  329 (347)
T 2gop_A          319 TATRLRELFTW  329 (347)
T ss_dssp             CSSSCCEEEEE
T ss_pred             CCCChHHheEe
Confidence            77765 77765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.74  E-value=1.2e-15  Score=151.36  Aligned_cols=273  Identities=7%  Similarity=0.008  Sum_probs=195.7

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEe
Q psy3640         188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTY  266 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~  266 (616)
                      ..|.+++|++++..++..+.++.++.|   .++....+..+...+.+++|+++++++ ++..++.|.+||..+++.....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            457888999998888888888999999   466777788888888999999999976 5677899999999998876655


Q ss_pred             eCCCCcEEEEEEeCCCCCEEEEEECC----CeEEEEeCCCcceeEEee-----eceeeEEEcCCCCEEEEEeC------C
Q psy3640         267 RGHQNVVYAVAFSEPYGDKILTGSFD----KTLKLWASAKEECIQTYR-----GHSAEVTFSPDQSTFCSCSM------D  331 (616)
Q Consensus       267 ~~h~~~V~~l~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~l~~~~~------d  331 (616)
                      ..+...+.+++++ ++++++++...+    +.|.+||..++.....+.     .....++++|++..+++...      .
T Consensus        83 ~~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           83 VSHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             ECSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             eCCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence            4577889999999 778888877766    689999998877653332     12345789999987776653      3


Q ss_pred             CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640         332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS  410 (616)
Q Consensus       332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (616)
                      +.|..+|..+++... +..+...+..++|+|+++.++++ +.++.|.+||+..........       .........++ 
T Consensus       162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~-------~~~~~~~~~~~-  232 (333)
T 2dg1_A          162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-------GATIPYYFTGH-  232 (333)
T ss_dssp             EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-------EEEEEEECCSS-
T ss_pred             ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc-------cceEEEecCCC-
Confidence            556667766554433 32334467899999999866554 457899999985210000000       00000011111 


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC------CEEEEEEcCCCCEEEEEeCCC
Q psy3640         411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED------EVLDIAFDYSGSKLATASSDQ  474 (616)
Q Consensus       411 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~~~~~~~l~~~~~dg  474 (616)
                      ..+..++++++++++++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|++++.++
T Consensus       233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            35677999999998888888889999998 4666666654433      688999999987777666553

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=2.2e-15  Score=149.35  Aligned_cols=264  Identities=11%  Similarity=0.074  Sum_probs=185.8

Q ss_pred             eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640         315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                      .++|++++..++....++.++.|   .++....+..+...+.+++|+|++++++++..++.|.+||..            
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~------------   74 (333)
T 2dg1_A           10 TLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE------------   74 (333)
T ss_dssp             BCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT------------
T ss_pred             eeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC------------
Confidence            34567777666666777888888   355666777777788999999999988888889999999986            


Q ss_pred             ccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEE
Q psy3640         395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLA  468 (616)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~  468 (616)
                          ..........+...+.+++++++++++++...+    +.|.+||..++.....+.  .....+.+++++|+|++++
T Consensus        75 ----~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v  150 (333)
T 2dg1_A           75 ----TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYF  150 (333)
T ss_dssp             ----TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEE
T ss_pred             ----CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEE
Confidence                333333333456779999999999988877766    689999998876543332  2345799999999998877


Q ss_pred             EEeC------CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEE-eCCCcEEEEecCCc-eEE--e----
Q psy3640         469 TASS------DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA-SSDQTAKLWTVGGA-VEL--L----  534 (616)
Q Consensus       469 ~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~-~~~--~----  534 (616)
                      +...      .+.|..++..+...  ..+..   .......++++|+++.++.+ ..++.|.+|+.... ...  .    
T Consensus       151 ~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~---~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~  225 (333)
T 2dg1_A          151 TDFRGYSTNPLGGVYYVSPDFRTV--TPIIQ---NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI  225 (333)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCE--EEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred             EeccccccCCCceEEEEeCCCCEE--EEeec---CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence            6653      24565666543221  11111   11235678999999866554 45789999999532 111  1    


Q ss_pred             -EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcc------cEEEEEEeeCCCEEEEeeCC
Q psy3640         535 -QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED------DVFSCGFNYNGDTIITASKD  604 (616)
Q Consensus       535 -~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~------~V~~l~~s~~~~~l~t~s~D  604 (616)
                       ..+.++ ..+..++++++|++.++...++.|.+||. +++.+..+..+..      .+.+++|+||++.|+.++.+
T Consensus       226 ~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          226 PYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence             111122 46788999999998888888899999998 5777766654433      58899999998777666555

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=4.8e-15  Score=147.75  Aligned_cols=256  Identities=11%  Similarity=0.112  Sum_probs=177.3

Q ss_pred             cceEEEEECCCCCEEEEEE---------CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECC---C--cE
Q psy3640         188 LPLTNITFDKFGTRCLTGS---------YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYD---R--TC  252 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs---------~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d---~--~I  252 (616)
                      ..+...++  ||+++|...         .++.|.+||+.+++... +    ..+..++|+|||+.+ .++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            45777888  899888653         25679999999887543 3    568899999999855 33332   3  48


Q ss_pred             EEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECC---------------------------CeEEEEeCCCcce
Q psy3640         253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD---------------------------KTLKLWASAKEEC  305 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d---------------------------g~i~iwd~~~~~~  305 (616)
                      .+||+.+++.......+ . +..++|+ |+++.|+.++.+                           ..|.+||+.+++.
T Consensus        88 ~~~~~~~g~~~~l~~~~-~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           88 WVADLETLSSKKILEAK-N-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEETTTTEEEEEEEES-E-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             EEEECCCCceEEEEcCC-C-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            88899988776555543 3 9999999 889988888743                           5799999998876


Q ss_pred             eEEeee-ceeeEEEcCCCCEEEEEeCCC-------cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC---
Q psy3640         306 IQTYRG-HSAEVTFSPDQSTFCSCSMDH-------TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS---  374 (616)
Q Consensus       306 ~~~~~~-~~~~v~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg---  374 (616)
                      +..+.. ....++|+|++ .++++..++       ...+|.+.+++ ...+..+ ..+..+  +|+|+.|+.++.++   
T Consensus       165 ~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~  239 (347)
T 2gop_A          165 IEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKY  239 (347)
T ss_dssp             EEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSC
T ss_pred             EeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCC
Confidence            333332 44567899999 777776542       33444443444 3444444 555554  89999888877543   


Q ss_pred             -----cEEEEecccccCCcccccccccccCCcceEEEecCccceeE-EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q psy3640         375 -----SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN-CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL  448 (616)
Q Consensus       375 -----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  448 (616)
                           .|.+|| .                . ........+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+
T Consensus       240 ~~~~~~l~~~d-~----------------~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~  297 (347)
T 2gop_A          240 MSEHNKLYIYD-G----------------K-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PI  297 (347)
T ss_dssp             CCSSCEEEEEC-S----------------S-CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EE
T ss_pred             ccccceEEEEC-C----------------C-ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EE
Confidence                 566666 2                1 111222334556665 8899 88 88999999999999 8766554 34


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCcE-EEEecC
Q psy3640         449 KNHEDEVLDIAFDYSGSKLATASSDQTA-NLWTVG  482 (616)
Q Consensus       449 ~~~~~~v~~l~~~~~~~~l~~~~~dg~i-~iwd~~  482 (616)
                      ..+...|.+++|+|  ..+++++.++.. .+|.+.
T Consensus       298 ~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          298 AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            44577899999999  677777777664 677665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=3.3e-15  Score=163.92  Aligned_cols=244  Identities=9%  Similarity=0.004  Sum_probs=173.8

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCC-----cEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEE
Q psy3640         351 HTGPVISLQFSSDRNMLITGSFDS-----SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI  425 (616)
Q Consensus       351 ~~~~v~~l~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  425 (616)
                      |...+..++|+|||++|+.+..++     .|++||+.                .+....... ....+..++|+||++.|
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~----------------tg~~~~~~~-~~~~~~~~~wspDg~~l  185 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----------------GAKELPDVL-ERVKFSCMAWTHDGKGM  185 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----------------TTEEEEEEE-EEECSCCEEECTTSSEE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------CCCCCcccc-cCcccceEEEEeCCCEE
Confidence            334678899999999998776543     89999997                333333222 22236789999999999


Q ss_pred             EEEeCCCc----------------EEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEe
Q psy3640         426 ASSSLDGT----------------AKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASS-----DQTANLWT  480 (616)
Q Consensus       426 ~~~~~dg~----------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-----dg~i~iwd  480 (616)
                      +.++.++.                |++|++.+++    .+.....+...+..+.|+|+|++|+..+.     +..+.+||
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d  265 (710)
T 2xdw_A          186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD  265 (710)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred             EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence            99988765                9999998875    22222234556889999999999988765     56899999


Q ss_pred             cCC------ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC----CcEEEEecCCceE-EeEEeecccc--CEEEE
Q psy3640         481 VGG------AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD----QTAKLWTVGGAVE-LLQTFYGHSN--EVSKV  547 (616)
Q Consensus       481 ~~~------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~~~-~~~~~~~h~~--~v~~l  547 (616)
                      +.+      +......+..+.....    ..|+++|+.|+..+..    +.|.+|++.+... ....+..|..  .+..+
T Consensus       266 ~~~~~~~~~~~~~~~~l~~~~~~~~----~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~  341 (710)
T 2xdw_A          266 LQQESNGITGILKWVKLIDNFEGEY----DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV  341 (710)
T ss_dssp             GGGSSSSSCSSCCCEEEECSSSSCE----EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE
T ss_pred             CcccccccCCccceEEeeCCCCcEE----EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE
Confidence            875      3222333444333321    2578899988877653    3599999876421 1234445544  68889


Q ss_pred             EEecCCCEEEEEECCCc--EEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe-e---CCCcEEEcccCCC
Q psy3640         548 SFHPTGKLVLSGSQDTT--CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA-S---KDNTCCIWRSMNR  615 (616)
Q Consensus       548 ~~spdg~~l~s~s~dg~--i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~-s---~Dg~i~vW~~~~~  615 (616)
                      +|++++.++++...|+.  |.+|++.+|+.+..+..+.+.|..++++|+++.++.. +   ..++++.||+.++
T Consensus       342 ~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  415 (710)
T 2xdw_A          342 ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (710)
T ss_dssp             EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence            99988888888888885  5667777888888888888889999999999766633 2   3478999998764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=1.6e-13  Score=133.30  Aligned_cols=275  Identities=9%  Similarity=-0.062  Sum_probs=184.3

Q ss_pred             eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640         315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT-LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      .+++.+++...++...++.|..||.. ++.... ...+...+.++++++++.+.++...++.|..||...          
T Consensus        19 ~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----------   87 (299)
T 2z2n_A           19 GITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG----------   87 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS----------
T ss_pred             ceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC----------
Confidence            44556666655554445667777766 433221 122346789999999998877776688899998641          


Q ss_pred             cccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640         394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT-LKNHEDEVLDIAFDYSGSKLATASS  472 (616)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~  472 (616)
                            .............+..+++.+++.++++...++.|..||. +++.... .......+..+++++++...++...
T Consensus        88 ------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  160 (299)
T 2z2n_A           88 ------IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ  160 (299)
T ss_dssp             ------CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred             ------cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence                  1111111123456788999999988888777889999998 5543322 2234567899999999988877777


Q ss_pred             CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640         473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT  552 (616)
Q Consensus       473 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  552 (616)
                      ++.+..|+. ++... . +.. ......+..+++++++.++++...++.|.+|+. ++.........+...+..++++++
T Consensus       161 ~~~i~~~~~-~g~~~-~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  235 (299)
T 2z2n_A          161 NNAIGRITE-SGDIT-E-FKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAG  235 (299)
T ss_dssp             TTEEEEECT-TCCEE-E-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred             CCEEEEEcC-CCcEE-E-eeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCC
Confidence            789999998 33221 1 111 112234678999999998777777899999999 433222223335567899999999


Q ss_pred             CCEEEEEECCCcEEEecCCcCeeeeE-eccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         553 GKLVLSGSQDTTCRLWSTESGECIQV-LKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       553 g~~l~s~s~dg~i~iwd~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      |++.++...++.|..||. +++.... +..+...+.++++ +++.+.++.+ .+.+..++..++
T Consensus       236 g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          236 IDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             TCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence            987666657789999998 4553322 3445567999999 8888777665 556777776553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=3e-13  Score=131.38  Aligned_cols=277  Identities=9%  Similarity=-0.014  Sum_probs=195.4

Q ss_pred             cccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCCCCEEEEEC-CCcEEEEeCCCC
Q psy3640         183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGCLTGSY-DRTCKLWDIKSG  260 (616)
Q Consensus       183 l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~~~lls~s~-d~~I~iwd~~~~  260 (616)
                      +..+...+.+++++++|+..++...++.|.+||.. ++..... ..+...+.++++.+++.+..+.. ++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            44566789999999999988777668899999988 5543322 23557899999999999775554 7889999986 4


Q ss_pred             ce-EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-e---eceeeEEEcCCCCEEEEEeCCCcEE
Q psy3640         261 HE-ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-R---GHSAEVTFSPDQSTFCSCSMDHTAR  335 (616)
Q Consensus       261 ~~-~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~~~~l~~~~~dg~i~  335 (616)
                      +. ...+......+.++++. +++..+++...++.|..||. +++..... .   .....+++.+++...++...++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            33 22222355678999998 77888887777889999998 55443221 1   2345678999998887777778999


Q ss_pred             EEECCCCceeEE-eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         336 IFNTNSGQEMHT-LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       336 i~d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                      .||. +++.... .......+.++++++++++.++...++.|.+||.. .               .........+...+.
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g---------------~~~~~~~~~~~~~~~  228 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS-G---------------EITEFKIPTPNARPH  228 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C---------------CEEEEECSSTTCCEE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC-C---------------cEEEEECCCCCCCce
Confidence            9998 6665432 33345568899999999877766667899999872 1               111111223446688


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT-LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG  483 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  483 (616)
                      .+++++++.+.++...++.|..||. ++..... +..+...+.++++ +++.+.++.. .+.+..++..+
T Consensus       229 ~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          229 AITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             eEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            9999999987776667789999998 4543222 2334567899999 8887666654 56677777654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=7.3e-15  Score=142.93  Aligned_cols=243  Identities=12%  Similarity=0.061  Sum_probs=173.3

Q ss_pred             ceeEEeecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC
Q psy3640         343 QEMHTLKAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS  421 (616)
Q Consensus       343 ~~~~~~~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  421 (616)
                      ..+..+..+.....+++|+|+++ +++++..++.|..||..                ..  ...+..+...+..++++++
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~----------------~~--~~~~~~~~~~~~~l~~~~d   79 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD----------------GQ--LSPEMHPSHHQNGHCLNKQ   79 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT----------------SC--EEEEESSCSSEEEEEECTT
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC----------------CC--eEEEECCCCCcceeeECCC
Confidence            34445555666778999999998 77888889999999985                33  4555566777899999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEEEeC-----------------CCcEEEEe
Q psy3640         422 NSMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLATASS-----------------DQTANLWT  480 (616)
Q Consensus       422 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~~-----------------dg~i~iwd  480 (616)
                      ++++++...++.|.+||..+++........    ...+.+++++|+|+++++.+.                 .+.|..++
T Consensus        80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence            998887777789999999887654433221    234678999999998887321                 23455555


Q ss_pred             cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEE---eEEeeccccCEEEEEEecCCCEEE
Q psy3640         481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL---LQTFYGHSNEVSKVSFHPTGKLVL  557 (616)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~h~~~v~~l~~spdg~~l~  557 (616)
                      ...  .. ......   ......++|+|+++.+++.+.++.|.+|++......   ...+..+...+..++++++|++.+
T Consensus       160 ~~g--~~-~~~~~~---~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v  233 (296)
T 3e5z_A          160 PDG--TL-SAPIRD---RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA  233 (296)
T ss_dssp             TTS--CE-EEEECC---CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE
T ss_pred             CCC--CE-EEeecC---CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE
Confidence            442  22 222222   223467899999999977777899999998621122   222333556678899999998766


Q ss_pred             EEECCCcEEEecCCcCeeeeEeccCcccEEEEEE-eeCCCEEEEeeCCCcEEEcccCC
Q psy3640         558 SGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF-NYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       558 s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~-s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      +.  ++.|.+|+.+ ++.+..+..+.. +.+++| +|+++.|++++.++ +.-++..+
T Consensus       234 ~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          234 SA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             EE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             Ec--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence            66  7889999986 888888887777 899999 48889899888775 33334433

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.68  E-value=3.3e-14  Score=136.05  Aligned_cols=231  Identities=13%  Similarity=0.107  Sum_probs=180.8

Q ss_pred             CCCEEEEEECCCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCC-CcEEE
Q psy3640         198 FGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYA  275 (616)
Q Consensus       198 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~-~~V~~  275 (616)
                      .++.|++++.++.|.+||.++|+.+.++..+. ..+.++.++|+++++. +.++.|..||. +|+.+..+..+. ..+.+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence            46899999999999999999999999998876 5789999999999887 66889999999 899999998753 57888


Q ss_pred             EEEeCCCCCEEEEEEC-CCeEEEEeCCCcceeEEeeec---------eeeEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q psy3640         276 VAFSEPYGDKILTGSF-DKTLKLWASAKEECIQTYRGH---------SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEM  345 (616)
Q Consensus       276 l~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~---------~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  345 (616)
                      +.+. ++++.+++.+. ++.+..+|. +++.+..+...         ...++..++++++++...++.|..||.. |+.+
T Consensus        82 ~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           82 ARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            9998 89999999887 788888886 67776665421         1235788999999999999999999998 9999


Q ss_pred             EEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc------cceeEEEEc
Q psy3640         346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS------QEISNCLFN  419 (616)
Q Consensus       346 ~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~  419 (616)
                      .++... ..+.++...++|+.+++++.++.|..+|..                +++.+..+....      ..+..++..
T Consensus       159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~----------------tG~~~w~~~~~~~~~~~l~~~~~~~~~  221 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLE----------------SNRIVRRVNANDIEGVQLFFVAQLFPL  221 (276)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTT----------------TCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred             EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCc----------------CCcEEEEecCCCCCCccccccccceEc
Confidence            998764 345677888999999999888899999986                456665554322      236677788


Q ss_pred             cCCCEEEEEeCC--------CcEEEEeC-CCCeEEEEeec
Q psy3640         420 FSNSMIASSSLD--------GTAKLWDV-RTMCCFYTLKN  450 (616)
Q Consensus       420 ~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~  450 (616)
                      +++.++++....        +..+++.+ .+++.+.++..
T Consensus       222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            888888877522        12234444 45666655543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=1.6e-14  Score=158.45  Aligned_cols=241  Identities=9%  Similarity=-0.001  Sum_probs=173.1

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCC-----cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-EEEECCCc-------
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDR-----TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC-LTGSYDRT-------  251 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg-----~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~l-ls~s~d~~-------  251 (616)
                      +|...+..++|||||++||.++.++     +|++||+.+++.+.....+ ..+..++|+||++. +.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4656789999999999999776543     8999999999887643322 23678999999984 46666655       


Q ss_pred             ---------EEEEeCCCCce--EEEee--CCCCcEEEEEEeCCCCCEEEEEEC-----CCeEEEEeCCC------cc-ee
Q psy3640         252 ---------CKLWDIKSGHE--ICTYR--GHQNVVYAVAFSEPYGDKILTGSF-----DKTLKLWASAK------EE-CI  306 (616)
Q Consensus       252 ---------I~iwd~~~~~~--~~~~~--~h~~~V~~l~~~~~~~~~l~s~s~-----dg~i~iwd~~~------~~-~~  306 (616)
                               |++|++.+++.  ...+.  .|...+..+.|+ +++++|+.++.     +..|.+||+.+      +. ..
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                     99999998863  23333  355668899999 88999888775     56899999986      43 34


Q ss_pred             EEeeecee--eEEEcCCCCEEEEEeCC----CcEEEEECCCCc--eeEEeecCCc--CEEEEEEcCCCCEEEEEECCCcE
Q psy3640         307 QTYRGHSA--EVTFSPDQSTFCSCSMD----HTARIFNTNSGQ--EMHTLKAHTG--PVISLQFSSDRNMLITGSFDSSI  376 (616)
Q Consensus       307 ~~~~~~~~--~v~~~~~~~~l~~~~~d----g~i~i~d~~~~~--~~~~~~~~~~--~v~~l~~~~~~~~l~~g~~dg~i  376 (616)
                      ..+..+..  ...++|++..++..+..    +.|.+||+.++.  ....+..|..  .+..++|++++.++++...++..
T Consensus       280 ~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~  359 (710)
T 2xdw_A          280 VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (710)
T ss_dssp             EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence            44443332  22588999988877654    359999998774  2344544544  67889999777888888888865


Q ss_pred             EE--EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC----CCcEEEEeCCCCe
Q psy3640         377 VV--WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL----DGTAKLWDVRTMC  443 (616)
Q Consensus       377 ~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~  443 (616)
                      ++  |++.                .+.....+..+...+..+.+++++..++....    .+.++.||+.+++
T Consensus       360 ~l~~~~~~----------------~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          360 TLQLHDLA----------------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEEETT----------------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEEECC----------------CCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            55  5543                33445556666777888889998876664432    3689999998876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=5.3e-14  Score=136.80  Aligned_cols=241  Identities=10%  Similarity=0.023  Sum_probs=175.5

Q ss_pred             CcEEEEEeccCCcEEEEEEcCCCC--EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEE
Q psy3640         219 GHEICTYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLK  296 (616)
Q Consensus       219 ~~~~~~~~~h~~~I~~l~fs~~~~--lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~  296 (616)
                      +..+..+..+.....+++|+|++.  ++++..++.|..||..++  ...+..+...+.+++++ ++++++++...++.|.
T Consensus        17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~-~dg~l~v~~~~~~~i~   93 (296)
T 3e5z_A           17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLN-KQGHLIACSHGLRRLE   93 (296)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEEC-TTCCEEEEETTTTEEE
T ss_pred             CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeEC-CCCcEEEEecCCCeEE
Confidence            344455666677788999999998  447778999999999988  56777788889999999 7888887777779999


Q ss_pred             EEeCCCcceeEEeee-------ceeeEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCceeEEeecCC
Q psy3640         297 LWASAKEECIQTYRG-------HSAEVTFSPDQSTFCSC----S-------------MDHTARIFNTNSGQEMHTLKAHT  352 (616)
Q Consensus       297 iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~  352 (616)
                      +||..+++.......       ....++++|+++++++.    +             ..+.|..++.. ++ ...+..+.
T Consensus        94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~  171 (296)
T 3e5z_A           94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR  171 (296)
T ss_dssp             EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC
T ss_pred             EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC
Confidence            999988875543321       12357899999988873    2             13456666655 44 34445566


Q ss_pred             cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC-cceEEEecCccceeEEEEccCCCEEEEEeCC
Q psy3640         353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH-KPIHILTGHSQEISNCLFNFSNSMIASSSLD  431 (616)
Q Consensus       353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  431 (616)
                      .....++|+|+++.+++.+.++.|.+|++....             .. .....+..+...+..++++++|++.++.  +
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g-------------~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~  236 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG-------------ETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--G  236 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEEEECSSS-------------CEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--T
T ss_pred             CCCccEEECCCCCEEEEeCCCCeEEEEEECCCC-------------cCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--C
Confidence            678999999999988777778999999985210             00 0011222344556789999999876666  7


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEecC
Q psy3640         432 GTAKLWDVRTMCCFYTLKNHEDEVLDIAF-DYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       432 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~-~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      +.|.+||.. ++.+..+..+.. +.+++| +|+++.|++++.++ +..++..
T Consensus       237 ~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          237 DGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             TEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             CeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence            889999986 777777777766 899999 68999999988764 4344443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.66  E-value=4.2e-15  Score=162.62  Aligned_cols=192  Identities=11%  Similarity=0.049  Sum_probs=127.8

Q ss_pred             CCCcEEEEEEeCCCCCEEEE-----EECCCeEEEEeCCCccee-EE-eeece-eeEEEcCCCCEEEEEeCCCc-------
Q psy3640         269 HQNVVYAVAFSEPYGDKILT-----GSFDKTLKLWASAKEECI-QT-YRGHS-AEVTFSPDQSTFCSCSMDHT-------  333 (616)
Q Consensus       269 h~~~V~~l~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~-~~-~~~~~-~~v~~~~~~~~l~~~~~dg~-------  333 (616)
                      |...+.+++|| |++++|+.     |+.+.+|++||+.+++.+ .. +.... ..++|+||++.|+.++.+..       
T Consensus       119 ~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          119 GTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             SCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             CCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            44567788888 77887773     344568999999999865 22 22221 56799999999999988776       


Q ss_pred             ------EEEEECCCCc----eeEEeecCCcCEEEEEEcCCCCEEEEEECCC----cEEEEecccccCCcccccccccccC
Q psy3640         334 ------ARIFNTNSGQ----EMHTLKAHTGPVISLQFSSDRNMLITGSFDS----SIVVWDIQYQFGTRNAYAESTYRAS  399 (616)
Q Consensus       334 ------i~i~d~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~  399 (616)
                            |++|++.++.    .+.....+...+.++.|+|||++|+.++.++    .|.+|+..                .
T Consensus       198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~----------------~  261 (695)
T 2bkl_A          198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG----------------E  261 (695)
T ss_dssp             GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT----------------C
T ss_pred             CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC----------------C
Confidence                  9999999876    3333344556789999999999988877665    56666542                2


Q ss_pred             CcceEEEecCccceeEEEEccCCCEEEEEeC----CCcEEEEeCCCCeE---EEEeecC-CCCEEEEEEcCCCCEEEEEe
Q psy3640         400 HKPIHILTGHSQEISNCLFNFSNSMIASSSL----DGTAKLWDVRTMCC---FYTLKNH-EDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       400 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~---~~~~~~~-~~~v~~l~~~~~~~~l~~~~  471 (616)
                      . ....+..+...+....+ +++. ++..+.    ++.|.+||+.++..   ...+..+ ...+..++++ ++.++++..
T Consensus       262 ~-~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          262 K-DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             S-SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             C-ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            2 23344445555555555 5666 444443    57899999987642   2222222 3456667776 556667777


Q ss_pred             CCCcEEEEec
Q psy3640         472 SDQTANLWTV  481 (616)
Q Consensus       472 ~dg~i~iwd~  481 (616)
                      .|+..++|.+
T Consensus       338 ~dg~~~l~~~  347 (695)
T 2bkl_A          338 KDATSEVRVA  347 (695)
T ss_dssp             ETTEEEEEEE
T ss_pred             ECCEEEEEEE
Confidence            7777666654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.66  E-value=2.5e-14  Score=137.03  Aligned_cols=239  Identities=7%  Similarity=0.035  Sum_probs=169.6

Q ss_pred             CEEEEEEcCCCCEEE-EEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC
Q psy3640         354 PVISLQFSSDRNMLI-TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG  432 (616)
Q Consensus       354 ~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  432 (616)
                      ...+++++++|++++ +.+.++.|.+||...                .............+..++++++++++++.. ++
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~----------------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~   87 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS----------------TGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NN   87 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC---------------------EECCCCSCCSCCCEEECTTCCEEEEET-TT
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCC----------------cccceEeeCCcCCcceeEECCCCCEEEEcC-CC
Confidence            678999999998766 446788999998642                111111122334577899999998666655 88


Q ss_pred             cEEEEeCCCCeEEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC
Q psy3640         433 TAKLWDVRTMCCFYTLK-NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS  511 (616)
Q Consensus       433 ~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  511 (616)
                      .|.+||....... .+. .....+..++++++|..+++...++.|.+|+..+.......    .........++++++++
T Consensus        88 ~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B           88 RVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP----FTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             EEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC----CCSCCSCCCEEECTTCC
T ss_pred             EEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec----cccCCCceeEEEeCCCC
Confidence            9999998765433 232 23367899999999997777777889999976543222111    11122355789999999


Q ss_pred             EEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640         512 KLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF  591 (616)
Q Consensus       512 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~  591 (616)
                      ++++...++.|.+|+....... .....+...+..++++++|.+.++...++.|.+|+............+...+.++++
T Consensus       163 l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~  241 (270)
T 1rwi_B          163 VYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV  241 (270)
T ss_dssp             EEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred             EEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence            7777777899999998774332 222233367899999999987777777889999998765444333334456899999


Q ss_pred             eeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         592 NYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       592 s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      +++|+++++...++.|+++++..+
T Consensus       242 ~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          242 DSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             CTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             CCCCCEEEEECCCCEEEEEcCCCc
Confidence            999998899999999999998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=1.7e-13  Score=135.12  Aligned_cols=273  Identities=10%  Similarity=0.043  Sum_probs=185.5

Q ss_pred             CCeEEEEeCCCcceeEEee---------eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcC
Q psy3640         292 DKTLKLWASAKEECIQTYR---------GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS  362 (616)
Q Consensus       292 dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~  362 (616)
                      +++|.++|..+++....+.         .....+++. ++..+++...++.|.+||..+++.+.++. .......+++++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~   93 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS   93 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC
Confidence            7899999999988765431         112334553 34455555567899999999999988885 356678999988


Q ss_pred             CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc-----cceeEEEEccCCCEEEEEe-CCCcEEE
Q psy3640         363 DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS-----QEISNCLFNFSNSMIASSS-LDGTAKL  436 (616)
Q Consensus       363 ~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~-~dg~i~i  436 (616)
                      ++...++...++.|.+||..                +......+....     .....+++ .++.++++.. .++.|.+
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~----------------t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~v  156 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPK----------------TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILK  156 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETT----------------TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEE
T ss_pred             CCeEEEEECCCCeEEEEECC----------------CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEE
Confidence            88544444389999999987                333333333222     13455666 3444444443 4889999


Q ss_pred             EeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC----------CcEEEEecCCceeeeeEEeccCCCeeeEEEEEE
Q psy3640         437 WDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD----------QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAF  506 (616)
Q Consensus       437 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~  506 (616)
                      +|..+++....+.. ......++++|+|++++++..+          +.|.++|..+... ...+.....  .....+++
T Consensus       157 iD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g--~~p~~la~  232 (328)
T 3dsm_A          157 IDTETDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLG--DWPSEVQL  232 (328)
T ss_dssp             EETTTTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTT--CCCEEEEE
T ss_pred             EECCCCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCC--CCceeEEE
Confidence            99999998887764 3345789999999877776554          7899999887643 222222111  23567999


Q ss_pred             cCCCCEEEEEeCCCcEEEEecCCceEEeEE-eeccccCEEEEEEecC-CCEEEEE----ECCCcEEEecCCcCeeeeEec
Q psy3640         507 DYSGSKLATASSDQTAKLWTVGGAVELLQT-FYGHSNEVSKVSFHPT-GKLVLSG----SQDTTCRLWSTESGECIQVLK  580 (616)
Q Consensus       507 s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~h~~~v~~l~~spd-g~~l~s~----s~dg~i~iwd~~~~~~~~~~~  580 (616)
                      +|+++.|+++..  .|.+||..+....... ..........++++|+ +++.++.    ..++.|.+||.. |+.+..+.
T Consensus       233 ~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          233 NGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             CTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             ecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            999999988765  8999999765321111 1112456889999995 5555555    568899999998 99888886


Q ss_pred             cCcccEEEEEE
Q psy3640         581 AHEDDVFSCGF  591 (616)
Q Consensus       581 ~h~~~V~~l~~  591 (616)
                      .... -..++|
T Consensus       310 ~G~~-P~~~~~  319 (328)
T 3dsm_A          310 VGII-PGAFCW  319 (328)
T ss_dssp             EEES-EEEEEE
T ss_pred             eccC-cceEEE
Confidence            4333 345555

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=4.6e-14  Score=139.21  Aligned_cols=253  Identities=9%  Similarity=-0.011  Sum_probs=183.5

Q ss_pred             CCCcEEEEECCCCcEEEEEe------ccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeC
Q psy3640         207 YDRTCKLWDIKSGHEICTYR------GHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE  280 (616)
Q Consensus       207 ~dg~i~iwd~~~~~~~~~~~------~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~  280 (616)
                      .+++|.+||.++++....+.      ........+++..+.-+++...++.|.+||..+++.+.++. .......++++ 
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~-   92 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL-   92 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE-
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe-
Confidence            37899999999998765442      12234677888644335577778999999999999988886 45678899998 


Q ss_pred             CCCCEEEEEECCCeEEEEeCCCcceeEEeee--------ceeeEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEeec
Q psy3640         281 PYGDKILTGSFDKTLKLWASAKEECIQTYRG--------HSAEVTFSPDQSTFCSCS--MDHTARIFNTNSGQEMHTLKA  350 (616)
Q Consensus       281 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  350 (616)
                      +++..+++...++.|.+||..+++....+..        ....+++  ++..++++.  .++.|.++|..+++....+..
T Consensus        93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~  170 (328)
T 3dsm_A           93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI  170 (328)
T ss_dssp             ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence            5564444444899999999999988776653        2345666  455555555  488999999999998887765


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECC----------CcEEEEecccccCCcccccccccccCCcceEEEecC-ccceeEEEEc
Q psy3640         351 HTGPVISLQFSSDRNMLITGSFD----------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-SQEISNCLFN  419 (616)
Q Consensus       351 ~~~~v~~l~~~~~~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~  419 (616)
                      . .....++++|+|+++++...+          +.|.++|..                .......+... ......++++
T Consensus       171 g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~----------------t~~v~~~~~~~~g~~p~~la~~  233 (328)
T 3dsm_A          171 G-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE----------------TFTVEKQFKFKLGDWPSEVQLN  233 (328)
T ss_dssp             S-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT----------------TTEEEEEEECCTTCCCEEEEEC
T ss_pred             C-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECC----------------CCeEEEEEecCCCCCceeEEEe
Confidence            3 345788999999877666554          789999986                44444333322 2367889999


Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEEEE--eecCCCCEEEEEEcCC-CCEEEEE----eCCCcEEEEecC
Q psy3640         420 FSNSMIASSSLDGTAKLWDVRTMCCFYT--LKNHEDEVLDIAFDYS-GSKLATA----SSDQTANLWTVG  482 (616)
Q Consensus       420 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~-~~~l~~~----~~dg~i~iwd~~  482 (616)
                      |+++.++++..  .|.+||..+++....  +.........++++|+ +..+++.    ..++.|.+||..
T Consensus       234 ~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          234 GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            99999888765  899999988765321  1112467899999994 5555555    567899999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.64  E-value=1.5e-12  Score=130.20  Aligned_cols=272  Identities=8%  Similarity=-0.051  Sum_probs=183.3

Q ss_pred             cCCCCEEEEEeC--CC---cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEeccc
Q psy3640         319 SPDQSTFCSCSM--DH---TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS----------FDSSIVVWDIQY  383 (616)
Q Consensus       319 ~~~~~~l~~~~~--dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~----------~dg~i~iwd~~~  383 (616)
                      .|+++.+++...  .+   .|.++|..+++.+..+.....+  .++++|||++++++.          .++.|.+||.. 
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~-  105 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-  105 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-
Confidence            356666665543  22   7899999999988887754444  999999999999886          36789999986 


Q ss_pred             ccCCcccccccccccCCcceEEEecC-------ccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEEEE-eecCCC
Q psy3640         384 QFGTRNAYAESTYRASHKPIHILTGH-------SQEISNCLFNFSNSMIASSSL--DGTAKLWDVRTMCCFYT-LKNHED  453 (616)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~  453 (616)
                                     ..+.+..+...       ......++++|++++++++..  ++.|.++| .+++.+.. +... .
T Consensus       106 ---------------t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~  168 (373)
T 2mad_H          106 ---------------TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T  168 (373)
T ss_pred             ---------------CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c
Confidence                           33333332211       123457899999999998874  47899999 99988877 5432 2


Q ss_pred             CEEEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeeeEE--eccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         454 EVLDIAFDYSG-SKLATASSDQTANLWTVGGAVELLQTF--YGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA  530 (616)
Q Consensus       454 ~v~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  530 (616)
                      .   +.+.|++ ..+++.+.||.+.+++. .+.......  ........-.....+.+++..++..+..+.+.+.|+...
T Consensus       169 ~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~  244 (373)
T 2mad_H          169 C---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA  244 (373)
T ss_pred             e---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence            2   3444544 45667778999999999 543331111  000111111123456666666665567889999998653


Q ss_pred             e-EEeEEeec----------cccCEEEEEEecCCCEEEEEEC----------CCcEEEecCCcCeeeeEeccCcccEEEE
Q psy3640         531 V-ELLQTFYG----------HSNEVSKVSFHPTGKLVLSGSQ----------DTTCRLWSTESGECIQVLKAHEDDVFSC  589 (616)
Q Consensus       531 ~-~~~~~~~~----------h~~~v~~l~~spdg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~~V~~l  589 (616)
                      . .....+.-          .......++++|+++.+.++..          ++.|.++|..+++.+.++... ....++
T Consensus       245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i  323 (373)
T 2mad_H          245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAI  323 (373)
T ss_pred             cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeE
Confidence            2 22222211          1122445789999998887653          357999999999999988643 357899


Q ss_pred             EEeeCCC-EEEEee-CCCcEEEcccCCC
Q psy3640         590 GFNYNGD-TIITAS-KDNTCCIWRSMNR  615 (616)
Q Consensus       590 ~~s~~~~-~l~t~s-~Dg~i~vW~~~~~  615 (616)
                      +|+|||+ +++++. .++.|.+||+.+.
T Consensus       324 ~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          324 SVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             EECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            9999999 777777 5899999999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.64  E-value=2.4e-13  Score=133.96  Aligned_cols=292  Identities=12%  Similarity=0.074  Sum_probs=197.6

Q ss_pred             CCCCCEEEEEEC-----CCeEEEEeCCCcceeEEeee-ceeeEEEcCCCCEEEEEe----------CCCcEEEEECCCCc
Q psy3640         280 EPYGDKILTGSF-----DKTLKLWASAKEECIQTYRG-HSAEVTFSPDQSTFCSCS----------MDHTARIFNTNSGQ  343 (616)
Q Consensus       280 ~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~----------~dg~i~i~d~~~~~  343 (616)
                      +|+++.++....     ++.|.+.|..+++.+.++.. ....++++|++++++++.          .++.|.+||..+.+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~  120 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL  120 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence            378888888766     67999999999999888763 233489999999988775          35789999999999


Q ss_pred             eeEEeecCC-------cCEEEEEEcCCCCEEEEEEC--CCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         344 EMHTLKAHT-------GPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       344 ~~~~~~~~~-------~~v~~l~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                      .+..+....       .....++++|||++++++..  ++.|.++|+.                ..+.+..+.....   
T Consensus       121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~----------------t~~vv~tI~v~g~---  181 (386)
T 3sjl_D          121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE----------------GKAFKRMLDVPDC---  181 (386)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT----------------TTEEEEEEECCSE---
T ss_pred             EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC----------------CCcEEEEEECCCc---
Confidence            988875422       23467899999999998874  6899999997                5555555532211   


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecC----CCCEE-EEEEc-CCCCEEEEEeCCCcEEEEecCCcee-
Q psy3640         415 NCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFYTLKNH----EDEVL-DIAFD-YSGSKLATASSDQTANLWTVGGAVE-  486 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~-~l~~~-~~~~~l~~~~~dg~i~iwd~~~~~~-  486 (616)
                      ...+....+.+++.+.||.+.+.++.+ ++........    ..++. ...|. ++|++++ .+.+|.+.+.|..+... 
T Consensus       182 ~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~  260 (386)
T 3sjl_D          182 YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK  260 (386)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE
T ss_pred             ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce
Confidence            223334456777888888888888876 5443221111    12221 23554 5665544 56689999999976432 


Q ss_pred             eeeEEe--c-----cCCCeeeEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCceEEeEEeeccccCEEEEEE
Q psy3640         487 LLQTFY--G-----HSNEVSKVLDIAFDYSGSKLATASS----------DQTAKLWTVGGAVELLQTFYGHSNEVSKVSF  549 (616)
Q Consensus       487 ~~~~~~--~-----~~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~  549 (616)
                      ....+.  .     ..........++++++++.+++...          .+.|.+.|..+.........+  .++..+++
T Consensus       261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lav  338 (386)
T 3sjl_D          261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINV  338 (386)
T ss_dssp             ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEE
T ss_pred             eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEE
Confidence            222221  0     0000111224677999998888653          257999999986444433333  36889999


Q ss_pred             ecCCC-EEEEEE-CCCcEEEecCCcCeeeeEeccCcccEEEEEEeeC
Q psy3640         550 HPTGK-LVLSGS-QDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN  594 (616)
Q Consensus       550 spdg~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~  594 (616)
                      +||++ +|+++. .++.|.++|..+++.+.++..... -..+.+++|
T Consensus       339 s~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~-p~~l~~s~d  384 (386)
T 3sjl_D          339 SQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH-GPQVITTAD  384 (386)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS-SCCEEEECC
T ss_pred             CCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCC-CceeEECCc
Confidence            99997 666654 589999999999999998875432 334566665

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.63  E-value=6.7e-14  Score=133.98  Aligned_cols=238  Identities=5%  Similarity=-0.052  Sum_probs=170.7

Q ss_pred             ceEEEEECCCCCEEE-EEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640         189 PLTNITFDKFGTRCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR  267 (616)
Q Consensus       189 ~i~~v~~s~~g~~la-sgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~  267 (616)
                      ...+++++++|++++ +.+.++.|.+||..++........+...+.++++++++.++.+..++.|.+||..+........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~  104 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF  104 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence            788999999999777 5467889999997665443222334457889999999997766668899999987665432222


Q ss_pred             CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q psy3640         268 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQE  344 (616)
Q Consensus       268 ~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~  344 (616)
                      .....+..+++. ++++.+++...++.|.+|+..+........   .....++++++++.+++...++.|.+||......
T Consensus       105 ~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          105 DGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             CSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             CCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce
Confidence            333678999998 678877777778999999866554432221   2345679999999777777788999999887665


Q ss_pred             eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640         345 MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM  424 (616)
Q Consensus       345 ~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  424 (616)
                      ......+...+.+++++++|.++++...++.|.+|+...                .........+...+..+++++++++
T Consensus       184 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~----------------~~~~~~~~~~~~~p~~i~~~~~g~l  247 (270)
T 1rwi_B          184 VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS----------------TTSTVLPFTGLNTPLAVAVDSDRTV  247 (270)
T ss_dssp             EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC----------------SCCEECCCCSCSCEEEEEECTTCCE
T ss_pred             EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC----------------CcceeeccCCCCCceeEEECCCCCE
Confidence            443333446789999999997777777788999999752                1111111123356788999999998


Q ss_pred             EEEEeCCCcEEEEeCCCCe
Q psy3640         425 IASSSLDGTAKLWDVRTMC  443 (616)
Q Consensus       425 l~~~~~dg~i~iwd~~~~~  443 (616)
                      +++...++.|++++....+
T Consensus       248 ~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          248 YVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EEEEGGGTEEEEECCCGGG
T ss_pred             EEEECCCCEEEEEcCCCcc
Confidence            8888889999999987543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=5.2e-13  Score=131.53  Aligned_cols=274  Identities=11%  Similarity=0.026  Sum_probs=194.4

Q ss_pred             EEECCCCCEEEEEEC-----CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEe
Q psy3640         193 ITFDKFGTRCLTGSY-----DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWD  256 (616)
Q Consensus       193 v~~s~~g~~lasgs~-----dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd  256 (616)
                      ....|+++++.+...     ++.|.+.|..+++.+.++..-..+ . ++++||++.+ ++.          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            455799999988876     679999999999999999866666 3 9999999944 333          367899999


Q ss_pred             CCCCceEEEeeCCC-------CcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEE
Q psy3640         257 IKSGHEICTYRGHQ-------NVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCS  327 (616)
Q Consensus       257 ~~~~~~~~~~~~h~-------~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~  327 (616)
                      ..+++.+..+.-..       .....++|+ +++++++++..  ++.|.++|+.+++.+.++........+....+.+++
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~  194 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  194 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence            99999988875321       235578998 88999888874  689999999999999888654433334445567778


Q ss_pred             EeCCCcEEEEECCC-CceeEEeecC----CcCEE-EEEEc-CCCCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640         328 CSMDHTARIFNTNS-GQEMHTLKAH----TGPVI-SLQFS-SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       328 ~~~dg~i~i~d~~~-~~~~~~~~~~----~~~v~-~l~~~-~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                      .+.||.+.+.++.+ ++.......+    ..++. ...|. ++|++++ .+.+|.|.+.|......              
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~--------------  259 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA--------------  259 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC--------------
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc--------------
Confidence            88899988888876 5543222111    12221 23554 5665444 66689999999863210              


Q ss_pred             cceEEEe----------cCccceeEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEE
Q psy3640         401 KPIHILT----------GHSQEISNCLFNFSNSMIASSSL----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAF  460 (616)
Q Consensus       401 ~~~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~  460 (616)
                      .....+.          ........++++++++.++....          .+.|.++|+.+++.+..+.. ..++.++++
T Consensus       260 ~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lav  338 (386)
T 3sjl_D          260 KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINV  338 (386)
T ss_dssp             EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEE
T ss_pred             eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEE
Confidence            0010010          01223445777888888877653          25799999999999988874 346889999


Q ss_pred             cCCCC-EEEEEe-CCCcEEEEecCCce
Q psy3640         461 DYSGS-KLATAS-SDQTANLWTVGGAV  485 (616)
Q Consensus       461 ~~~~~-~l~~~~-~dg~i~iwd~~~~~  485 (616)
                      +++++ +|+++. .++.+.++|..+..
T Consensus       339 s~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          339 SQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             CSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            99996 666654 58999999998764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.63  E-value=3.4e-12  Score=127.63  Aligned_cols=283  Identities=12%  Similarity=0.007  Sum_probs=191.9

Q ss_pred             EECCCCCEEEEEEC--CC---cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeC
Q psy3640         194 TFDKFGTRCLTGSY--DR---TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDI  257 (616)
Q Consensus       194 ~~s~~g~~lasgs~--dg---~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~  257 (616)
                      ...|+++++.+...  ..   +|.++|..+++.+.++.....+  .++++||++.+ ++.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            44578887777654  22   8899999999998888765555  99999999965 332          3678999999


Q ss_pred             CCCceEEEeeCC-------CCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEE-eeeceeeEEEcCCC-CEEE
Q psy3640         258 KSGHEICTYRGH-------QNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQT-YRGHSAEVTFSPDQ-STFC  326 (616)
Q Consensus       258 ~~~~~~~~~~~h-------~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~-~~l~  326 (616)
                      .+.+.+..+...       ......++|+ |++++|+++..  ++.|.++| .+++.+.. +..... +.+.|++ ..++
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~~~~~~~~~~~~  181 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-YHIHPGAPSTFY  181 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-EEEEeCCCceEE
Confidence            999888776532       1234588999 88999998874  57899999 99988877 654332 4455554 4566


Q ss_pred             EEeCCCcEEEEECCCCceeEEee-----cCCcCE-EEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLK-----AHTGPV-ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v-~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                      +.+.||.+.++|. +++......     ....++ ....+.+++..++..+..+.+.+.|+.........    ......
T Consensus       182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~----~~~~~~  256 (373)
T 2mad_H          182 LLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA----PIDALS  256 (373)
T ss_pred             EEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee----eeeecC
Confidence            7778999999999 887664322     111221 23456666665555557889999998521100000    000000


Q ss_pred             cceEEEecCccceeEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEE
Q psy3640         401 KPIHILTGHSQEISNCLFNFSNSMIASSSL----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLAT  469 (616)
Q Consensus       401 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~  469 (616)
                      ...............+.++++++.++++..          ++.|.++|+.+++.+.++. ......+++|+|+|+ ++++
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v  335 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYA  335 (373)
T ss_pred             CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEE
Confidence            000000001222344778999988877653          3579999999999998886 344689999999999 7777


Q ss_pred             Ee-CCCcEEEEecCCceee
Q psy3640         470 AS-SDQTANLWTVGGAVEL  487 (616)
Q Consensus       470 ~~-~dg~i~iwd~~~~~~~  487 (616)
                      +. .++.|.++|..+....
T Consensus       336 ~~~~~~~V~ViD~~t~~vv  354 (373)
T 2mad_H          336 LSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             EcCCCCeEEEEECCCCCEE
Confidence            76 5899999999876443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.62  E-value=2.5e-14  Score=156.54  Aligned_cols=240  Identities=9%  Similarity=-0.036  Sum_probs=161.7

Q ss_pred             CCcCEEEEEEcCCCCEEEEE-----ECCCcEEEEecccccCCcccccccccccCCcceEEEecCccc--eeEEEEccCCC
Q psy3640         351 HTGPVISLQFSSDRNMLITG-----SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE--ISNCLFNFSNS  423 (616)
Q Consensus       351 ~~~~v~~l~~~~~~~~l~~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~  423 (616)
                      |...+.+++|+|||++|+.+     +.+..|++||+...                ....  ..+...  ...++|+|+++
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg----------------~~~~--~~~~~~~~~~~~~wspDg~  180 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG----------------EWSK--VDVIEGGKYATPKWTPDSK  180 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC----------------CBCS--SCCBSCCTTCCCEECTTSS
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC----------------CCcC--CcccCcccccceEEecCCC
Confidence            44568899999999999843     34568999999732                2210  011111  26789999999


Q ss_pred             EEEEEeCCCc-------------EEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeCCC----cEEEEecC
Q psy3640         424 MIASSSLDGT-------------AKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASSDQ----TANLWTVG  482 (616)
Q Consensus       424 ~l~~~~~dg~-------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg----~i~iwd~~  482 (616)
                      .|+.++.+..             |++|++.++.    .+.....+...+.++.|+|+|++|+..+.++    .+.+|+..
T Consensus       181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~  260 (695)
T 2bkl_A          181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG  260 (695)
T ss_dssp             EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred             EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence            9999998766             9999998875    3333344556789999999999998887665    56666654


Q ss_pred             CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe---CCCcEEEEecCCceE-EeEEeecc--ccCEEEEEEecCCCEE
Q psy3640         483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS---SDQTAKLWTVGGAVE-LLQTFYGH--SNEVSKVSFHPTGKLV  556 (616)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~vwd~~~~~~-~~~~~~~h--~~~v~~l~~spdg~~l  556 (616)
                      ++  ....+..+...   .....+ ++|.+++...   .++.|.+||+.++.. ....+..|  ...+..++|+ ++.++
T Consensus       261 ~~--~~~~l~~~~~~---~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv  333 (695)
T 2bkl_A          261 EK--DFRLLVKGVGA---KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLS  333 (695)
T ss_dssp             CS--SCEEEEECSSC---CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEE
T ss_pred             CC--ceEEeecCCCc---eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEE
Confidence            33  22223332222   223344 5666444443   257899999876421 01223333  4468888998 77788


Q ss_pred             EEEECCCcEEEecCC-cCeeeeEeccC-cccEEEEEEeeCCCEEEE----eeCCCcEEEcccCCC
Q psy3640         557 LSGSQDTTCRLWSTE-SGECIQVLKAH-EDDVFSCGFNYNGDTIIT----ASKDNTCCIWRSMNR  615 (616)
Q Consensus       557 ~s~s~dg~i~iwd~~-~~~~~~~~~~h-~~~V~~l~~s~~~~~l~t----~s~Dg~i~vW~~~~~  615 (616)
                      ++...|+..+||.+. +++....+..+ .+.|..++++|+++.++.    ....++|++||+.++
T Consensus       334 ~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g  398 (695)
T 2bkl_A          334 LEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG  398 (695)
T ss_dssp             EEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred             EEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            889999998888665 46666666655 667888899999987773    334578999998764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.62  E-value=3.3e-13  Score=129.13  Aligned_cols=210  Identities=10%  Similarity=0.002  Sum_probs=166.2

Q ss_pred             CCCCEEEEECCCcEEEEeCCCCceEEEeeCCC-CcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec----e
Q psy3640         239 EPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH----S  313 (616)
Q Consensus       239 ~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~  313 (616)
                      |+..+++++.++.|.+||.++|+.+..+..+. ..+.++.++ |+++.++  +.++.|..||. +++.+..+..+    .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~-pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAAT-KAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEEC-TTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEEC-CCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            44446688999999999999999999998776 478889998 7898888  45788999999 89888888753    2


Q ss_pred             eeEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEeec------CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccC
Q psy3640         314 AEVTFSPDQSTFCSCSM-DHTARIFNTNSGQEMHTLKA------HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFG  386 (616)
Q Consensus       314 ~~v~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~  386 (616)
                      ..+.+.++++.+++.+. ++.+..+|. +|+.+..+..      +......+++.++|+++++...++.|..||.     
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~-----  153 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAP-----  153 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT-----
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECC-----
Confidence            34578999999999887 788888886 6777776642      2224456678899999999999999999997     


Q ss_pred             CcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCC------CCEEEEEE
Q psy3640         387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE------DEVLDIAF  460 (616)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~l~~  460 (616)
                                  .++.+..+... .....+...++++.++++..++.|..+|..+++.+.++....      ..+..++.
T Consensus       154 ------------~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~  220 (276)
T 3no2_A          154 ------------NGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFP  220 (276)
T ss_dssp             ------------TSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEE
T ss_pred             ------------CCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceE
Confidence                        34444554443 345567778999999999988899999999999999987432      22788888


Q ss_pred             cCCCCEEEEEe
Q psy3640         461 DYSGSKLATAS  471 (616)
Q Consensus       461 ~~~~~~l~~~~  471 (616)
                      .++|..+++..
T Consensus       221 ~~~G~i~v~~~  231 (276)
T 3no2_A          221 LQNGGLYICNW  231 (276)
T ss_dssp             CTTSCEEEEEE
T ss_pred             cCCCCEEEEec
Confidence            99998888764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=3.1e-12  Score=124.24  Aligned_cols=272  Identities=9%  Similarity=0.009  Sum_probs=182.4

Q ss_pred             eEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640         315 EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      .+++.+++...++...++.|..||.. ++... .+......+.++++++++++.++...++.|..+|.. .         
T Consensus        24 ~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g---------   92 (300)
T 2qc5_A           24 GITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G---------   92 (300)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---------
T ss_pred             eeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C---------
Confidence            45566666665555556777777766 44332 122234578899999999877776667889999864 1         


Q ss_pred             cccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE-EeecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640         394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY-TLKNHEDEVLDIAFDYSGSKLATASS  472 (616)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~~~~  472 (616)
                            .............+..+++.+++.++++...++.|..+|.. ++... .+......+..++++++++..++...
T Consensus        93 ------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           93 ------GFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             ------CEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             ------CeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence                  11111112233567889999999888877778899999987 54432 22334567899999999997666666


Q ss_pred             CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640         473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT  552 (616)
Q Consensus       473 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  552 (616)
                      ++.|..++......  . +. .......+..+++++++.+.++....+.|.+|+.... ........+...+.+++++++
T Consensus       166 ~~~i~~~~~~g~~~--~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~d~~  240 (300)
T 2qc5_A          166 NNSIGRITNTGKLE--E-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGE-ISEYDIPTPNARPHAITAGKN  240 (300)
T ss_dssp             TTEEEEECTTCCEE--E-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCC-EEEEECSSTTCCEEEEEECST
T ss_pred             CCeEEEECCCCcEE--E-ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCc-EEEEECCCCCCCceEEEECCC
Confidence            78899999843221  1 21 1122245678999999988777777888999998432 222223344567899999999


Q ss_pred             CCEEEEEECCCcEEEecCCcCeeee-EeccCcccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640         553 GKLVLSGSQDTTCRLWSTESGECIQ-VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS  612 (616)
Q Consensus       553 g~~l~s~s~dg~i~iwd~~~~~~~~-~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~  612 (616)
                      |++.++...++.|..|+. +++... .+......+.++++.++|++.++.. . .|..++.
T Consensus       241 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          241 SEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            987776666789999998 454432 2333445688899999998766655 4 5666654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.61  E-value=5e-12  Score=122.75  Aligned_cols=273  Identities=10%  Similarity=-0.011  Sum_probs=191.2

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEE-EEeccCCcEEEEEEcCCCCEEEEE-CCCcEEEEeCCCCce
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGCLTGS-YDRTCKLWDIKSGHE  262 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~-~~~~h~~~I~~l~fs~~~~lls~s-~d~~I~iwd~~~~~~  262 (616)
                      .....+.+++++++|+..++...++.|.+||.. ++... .+..+...+.++++.+++.+..+. .++.|..||.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            455688999999999988877778999999988 55443 222344679999999999977555 47889999988 654


Q ss_pred             EE-EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE-ee---eceeeEEEcCCCCEEEEEeCCCcEEEE
Q psy3640         263 IC-TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT-YR---GHSAEVTFSPDQSTFCSCSMDHTARIF  337 (616)
Q Consensus       263 ~~-~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~---~~~~~v~~~~~~~~l~~~~~dg~i~i~  337 (616)
                      .. .+......+.++++. ++++.+++...++.|..++.. ++.... +.   .....+++.++++..++...++.|..+
T Consensus        95 ~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  172 (300)
T 2qc5_A           95 TEYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI  172 (300)
T ss_dssp             EEEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence            32 223345678999998 778888777768899999987 554422 22   234567899999966666667889999


Q ss_pred             ECCCCceeEE-eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEE
Q psy3640         338 NTNSGQEMHT-LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNC  416 (616)
Q Consensus       338 d~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  416 (616)
                      |. +++.... ...+...+.++++++++++.++....+.|.+|+..                ..............+..+
T Consensus       173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~----------------g~~~~~~~~~~~~~~~~i  235 (300)
T 2qc5_A          173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT----------------GEISEYDIPTPNARPHAI  235 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT----------------CCEEEEECSSTTCCEEEE
T ss_pred             CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC----------------CcEEEEECCCCCCCceEE
Confidence            98 5554432 22344568999999999877766667789999863                111111122344567889


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCeEE-EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         417 LFNFSNSMIASSSLDGTAKLWDVRTMCCF-YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV  481 (616)
Q Consensus       417 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  481 (616)
                      ++.+++.+.++...++.|..||. ++... ..+......+.+++++++|.+.++.. . .|..++.
T Consensus       236 ~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          236 TAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             EECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             EECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            99999987777666789999998 44332 22333345688999999988665544 4 6666654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.59  E-value=2.4e-13  Score=149.79  Aligned_cols=240  Identities=12%  Similarity=0.048  Sum_probs=163.1

Q ss_pred             cCEEEEEEcCCCCEEEEEECC-----CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640         353 GPVISLQFSSDRNMLITGSFD-----SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS  427 (616)
Q Consensus       353 ~~v~~l~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  427 (616)
                      ..+..++|+|||++|+.++.+     ..|++||+.                .+..... ..+...+..++|+|+ +.|+.
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~----------------tg~~~~~-~~~~~~~~~~~wspD-~~l~~  224 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVA----------------DGKPLAD-ELKWVKFSGLAWLGN-DALLY  224 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETT----------------TCCEEEE-EEEEEESCCCEESTT-SEEEE
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECC----------------CCCCCCc-cCCCceeccEEEECC-CEEEE
Confidence            467889999999999887654     359999997                3333222 112222457899999 98888


Q ss_pred             EeCCCc--------------EEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCc
Q psy3640         428 SSLDGT--------------AKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASSDQ-----TANLWTVGGA  484 (616)
Q Consensus       428 ~~~dg~--------------i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~  484 (616)
                      ++.++.              |++|++.++.    .+.....+...+.++.|+|+|++|+..+.++     .+++||+.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            887654              8999997764    2222222334588999999999988877544     7999998765


Q ss_pred             eee-eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC----CcEEEEecCCc-eEEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640         485 VEL-LQTFYGHSNEVSKVLDIAFDYSGSKLATASSD----QTAKLWTVGGA-VELLQTFYGHSNEVSKVSFHPTGKLVLS  558 (616)
Q Consensus       485 ~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s  558 (616)
                      ... ...+..+....   ... ++|+|+.|+..+.+    +.|.+|++.+. ......+..+...+..++++ ++.++++
T Consensus       305 ~~~~~~~l~~~~~~~---~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~  379 (741)
T 1yr2_A          305 KIGPVTALIPDLKAQ---WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS  379 (741)
T ss_dssp             EECCCEEEECSSSSC---EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE
T ss_pred             CCcccEEecCCCCce---EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE
Confidence            322 33343333222   122 34899988888764    45999998764 23334444455567778887 5667888


Q ss_pred             EECCCcEEEecCC-cCeeeeEecc-CcccEEEEEEeeCCCEEEE----eeCCCcEEEcccCCC
Q psy3640         559 GSQDTTCRLWSTE-SGECIQVLKA-HEDDVFSCGFNYNGDTIIT----ASKDNTCCIWRSMNR  615 (616)
Q Consensus       559 ~s~dg~i~iwd~~-~~~~~~~~~~-h~~~V~~l~~s~~~~~l~t----~s~Dg~i~vW~~~~~  615 (616)
                      ...|+..+||.+. +++....+.. +.+.|..++++|+++.|+.    ....++|++||+.++
T Consensus       380 ~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          380 YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            8889988777654 4666666664 3567889999999886652    233488999998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.57  E-value=2.3e-12  Score=126.24  Aligned_cols=240  Identities=12%  Similarity=0.117  Sum_probs=170.9

Q ss_pred             cccCCcceEEEEECCCCCEEEE-------EECCCcEEEEECCCCcEEEEEe----ccCCcEEEEEEcCC-CCEEEEECCC
Q psy3640         183 LKSHLLPLTNITFDKFGTRCLT-------GSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVAFSEP-YGCLTGSYDR  250 (616)
Q Consensus       183 l~~h~~~i~~v~~s~~g~~las-------gs~dg~i~iwd~~~~~~~~~~~----~h~~~I~~l~fs~~-~~lls~s~d~  250 (616)
                      +........+++|+++|+.+++       +..++.|.+||..+++......    ++...+.+++++++ +.++.++..+
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~   92 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL   92 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence            3445556789999999988888       6778899999988887643322    25567999999999 8877777666


Q ss_pred             cEEEEeCCCCceEEE-eeC----CCCcEEEEEEeCCCCCEEEEEECC---------------CeEEEEeCCCcceeEEee
Q psy3640         251 TCKLWDIKSGHEICT-YRG----HQNVVYAVAFSEPYGDKILTGSFD---------------KTLKLWASAKEECIQTYR  310 (616)
Q Consensus       251 ~I~iwd~~~~~~~~~-~~~----h~~~V~~l~~~~~~~~~l~s~s~d---------------g~i~iwd~~~~~~~~~~~  310 (616)
                      .|.+||.+ ++.... ...    ....+.++++. ++++.+++...+               +.|..|+.. ++......
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            89999998 765433 221    12357899998 778887777655               567777766 54433222


Q ss_pred             --eceeeEEEc----CCCCEEEEE-eCCCcEEEEECC-CCce-----eEEeecCC-cCEEEEEEcCCCCEEEEEECCCcE
Q psy3640         311 --GHSAEVTFS----PDQSTFCSC-SMDHTARIFNTN-SGQE-----MHTLKAHT-GPVISLQFSSDRNMLITGSFDSSI  376 (616)
Q Consensus       311 --~~~~~v~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~~-----~~~~~~~~-~~v~~l~~~~~~~~l~~g~~dg~i  376 (616)
                        .....++++    |+++.++++ ..++.|.+||.. +++.     ...+..+. ..+..++++++|++.++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence              234567899    999766555 467899999986 4432     22333333 567889999999988888788999


Q ss_pred             EEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEE-eCCCcEEEEeCCC
Q psy3640         377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS-SLDGTAKLWDVRT  441 (616)
Q Consensus       377 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  441 (616)
                      .+||..                +......+..+...+.+++++++++.|+++ ..++.|..|++..
T Consensus       250 ~~~d~~----------------~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          250 EVFGPD----------------GGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEECTT----------------CBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEcCC----------------CCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            999975                234444445555778899999999955544 4567899998764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.55  E-value=4.2e-12  Score=124.32  Aligned_cols=239  Identities=15%  Similarity=0.163  Sum_probs=164.7

Q ss_pred             CcCEEEEEEcCCCCEEEE-------EECCCcEEEEecccccCCcccccccccccCCcceEEE----ecCccceeEEEEcc
Q psy3640         352 TGPVISLQFSSDRNMLIT-------GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL----TGHSQEISNCLFNF  420 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~  420 (616)
                      -....+++|+++++++++       +..++.|.+||...                .......    .++...+..+++++
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------g~~~~~~~~~~~~~~~~~~~i~~~~   80 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------GKKTVICKPEVNGYGGIPAGCQCDR   80 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------CCEEEEECCEETTEECCEEEEEECS
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------CcEEEEEecccCCCCCCCceEEEec
Confidence            345689999999988877       56788999999752                2211111    12345688899999


Q ss_pred             C-CCEEEEEeCCCcEEEEeCCCCeEEEE-eec----CCCCEEEEEEcCCCCEEEEEeCC---------------CcEEEE
Q psy3640         421 S-NSMIASSSLDGTAKLWDVRTMCCFYT-LKN----HEDEVLDIAFDYSGSKLATASSD---------------QTANLW  479 (616)
Q Consensus       421 ~-~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~l~~~~~~~~l~~~~~d---------------g~i~iw  479 (616)
                      + ++++++. ..+.|.+||.. ++.... ...    ....+.+++++++|+++++...+               +.+..|
T Consensus        81 ~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (314)
T 1pjx_A           81 DANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             SSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             CCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence            9 6555544 44579999988 665433 221    12358899999999887776554               466667


Q ss_pred             ecCCceeeeeEEeccCCCeeeEEEEEEc----CCCCEEEEE-eCCCcEEEEecC-Cce----EEeEEeeccc-cCEEEEE
Q psy3640         480 TVGGAVELLQTFYGHSNEVSKVLDIAFD----YSGSKLATA-SSDQTAKLWTVG-GAV----ELLQTFYGHS-NEVSKVS  548 (616)
Q Consensus       480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s----~~~~~l~~~-~~dg~i~vwd~~-~~~----~~~~~~~~h~-~~v~~l~  548 (616)
                      +...  ....... .   ......++++    |+++.++++ ..++.|.+|+.. .+.    .....+..+. ..+..++
T Consensus       159 ~~~g--~~~~~~~-~---~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~  232 (314)
T 1pjx_A          159 TTDG--QMIQVDT-A---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD  232 (314)
T ss_dssp             CTTS--CEEEEEE-E---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred             CCCC--CEEEecc-C---CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence            6552  2211111 1   1224568899    999766655 467899999975 221    1222333343 5688999


Q ss_pred             EecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEE-EEeeCCCcEEEcccCC
Q psy3640         549 FHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI-ITASKDNTCCIWRSMN  614 (616)
Q Consensus       549 ~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~t~s~Dg~i~vW~~~~  614 (616)
                      ++++|++.++...++.|.+||.++++.+..+..+...+.+++|+++++.| ++...++.|..|++..
T Consensus       233 ~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999988888888999999998888887777777789999999999955 5555668899998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.55  E-value=2.4e-12  Score=129.22  Aligned_cols=271  Identities=10%  Similarity=0.048  Sum_probs=187.4

Q ss_pred             CCCCEEEEEeCC-----CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEecccc
Q psy3640         320 PDQSTFCSCSMD-----HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS----------FDSSIVVWDIQYQ  384 (616)
Q Consensus       320 ~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~----------~dg~i~iwd~~~~  384 (616)
                      ++++.+++....     +.|.++|..+++.+..+..-..+  .++++||+++++++.          .++.|.++|..  
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~--  157 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV--  157 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT--
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC--
Confidence            466666665543     68999999999999998866666  899999999888876          36789999987  


Q ss_pred             cCCcccccccccccCCcceEEEecC-------ccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEEEEeecCCCCE
Q psy3640         385 FGTRNAYAESTYRASHKPIHILTGH-------SQEISNCLFNFSNSMIASSSL--DGTAKLWDVRTMCCFYTLKNHEDEV  455 (616)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v  455 (616)
                                    +.+.+..+.-.       ......+.++|++++++++..  ++.|.+.|+.+++.+.++.....  
T Consensus       158 --------------t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--  221 (426)
T 3c75_H          158 --------------TFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--  221 (426)
T ss_dssp             --------------TCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--
T ss_pred             --------------CCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--
Confidence                          55555444321       123457899999999999874  57899999999999888874321  


Q ss_pred             EEEEEcCCC-CEEEEEeCCCcEEEEecCCceeeee---EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640         456 LDIAFDYSG-SKLATASSDQTANLWTVGGAVELLQ---TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV  531 (616)
Q Consensus       456 ~~l~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  531 (616)
                        ....|++ ..+++.+.||.+.+.+...+.....   .+.....+  ....+.+++++..++.....+.+.+.|.....
T Consensus       222 --~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p--~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~  297 (426)
T 3c75_H          222 --YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDEL--LINHPAFSLRSGRLVWPTYTGKIFQADLTAEG  297 (426)
T ss_dssp             --EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSC--BCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred             --eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCc--eeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence              2223332 4556666777777777733322111   01111111  01134678999988888889999999986532


Q ss_pred             EEe-EEeec----------cccCEEEEEEecCCCEEEEEEC----------CCcEEEecCCcCeeeeEeccCcccEEEEE
Q psy3640         532 ELL-QTFYG----------HSNEVSKVSFHPTGKLVLSGSQ----------DTTCRLWSTESGECIQVLKAHEDDVFSCG  590 (616)
Q Consensus       532 ~~~-~~~~~----------h~~~v~~l~~spdg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~~~V~~l~  590 (616)
                      ..+ ..+.-          .......++++|+++++.+...          ++.|.+.|..+++.+.++.... ....++
T Consensus       298 ~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia  376 (426)
T 3c75_H          298 ATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSIN  376 (426)
T ss_dssp             EEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEE
T ss_pred             eEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEE
Confidence            211 11110          0111223689999987777642          3579999999999999987543 478899


Q ss_pred             EeeCCC-EEEEee-CCCcEEEcccCCC
Q psy3640         591 FNYNGD-TIITAS-KDNTCCIWRSMNR  615 (616)
Q Consensus       591 ~s~~~~-~l~t~s-~Dg~i~vW~~~~~  615 (616)
                      |+|||+ +++++. .++.|.|+|+.+.
T Consensus       377 ~spDg~~~lyv~n~~s~~VsVID~~t~  403 (426)
T 3c75_H          377 VSQDAEPLLYALSAGTQTLHIYDAATG  403 (426)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             EccCCCEEEEEEcCCCCeEEEEECCCC
Confidence            999999 888888 5899999999875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.54  E-value=1e-12  Score=144.78  Aligned_cols=271  Identities=12%  Similarity=0.035  Sum_probs=175.4

Q ss_pred             CCCCCEEEEEECCCc---EEEEEC--C---CCcEEEEE------eccCCcEEEEEEcCCCCEEE-E-ECC----CcEEEE
Q psy3640         196 DKFGTRCLTGSYDRT---CKLWDI--K---SGHEICTY------RGHQNVVYAVAFSEPYGCLT-G-SYD----RTCKLW  255 (616)
Q Consensus       196 s~~g~~lasgs~dg~---i~iwd~--~---~~~~~~~~------~~h~~~I~~l~fs~~~~lls-~-s~d----~~I~iw  255 (616)
                      +|+|++++....++.   -.+|-.  .   .++....+      .+|...+..++|||||+.++ + +.+    ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389999887665433   455544  3   34433322      23445788999999999652 2 222    369999


Q ss_pred             eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCe--------------EEEEeCCCcce--eEEeee--c---ee
Q psy3640         256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT--------------LKLWASAKEEC--IQTYRG--H---SA  314 (616)
Q Consensus       256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~--------------i~iwd~~~~~~--~~~~~~--~---~~  314 (616)
                      |+.+++.+.... +...+..++|+ |+ +.|+.++.++.              |++|++.++..  ...+..  +   ..
T Consensus       195 dl~tg~~~~~~~-~~~~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~  271 (741)
T 1yr2_A          195 GVADGKPLADEL-KWVKFSGLAWL-GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH  271 (741)
T ss_dssp             ETTTCCEEEEEE-EEEESCCCEES-TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             ECCCCCCCCccC-CCceeccEEEE-CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence            999998765321 21223578899 77 88888887654              88999987752  222322  1   34


Q ss_pred             eEEEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeEEeecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEeccc
Q psy3640         315 EVTFSPDQSTFCSCSMDH-----TARIFNTNSG--QEMHTLKAHTGPVISLQFSSDRNMLITGSFD----SSIVVWDIQY  383 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d----g~i~iwd~~~  383 (616)
                      .+.|+|||++++..+.++     .|++||+.++  +....+..+...+.... +|+|+.|+..+.+    +.|.+||+..
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            568999999998877544     7999999877  31455555555555553 4889988888764    4488898752


Q ss_pred             ccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCC-CCeEEEEeec-CCCCEEEEEEc
Q psy3640         384 QFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR-TMCCFYTLKN-HEDEVLDIAFD  461 (616)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~l~~~  461 (616)
                      .              .......+..+...+..+.+. ++.++++...++..++|.+. ++.....+.. ..+.+..++++
T Consensus       351 ~--------------~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s  415 (741)
T 1yr2_A          351 S--------------TPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGR  415 (741)
T ss_dssp             S--------------SCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECC
T ss_pred             C--------------ccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecC
Confidence            1              012223333444456667776 56678888888877766543 4555566654 35678899999


Q ss_pred             CCCCEEEEEe----CCCcEEEEecCCce
Q psy3640         462 YSGSKLATAS----SDQTANLWTVGGAV  485 (616)
Q Consensus       462 ~~~~~l~~~~----~dg~i~iwd~~~~~  485 (616)
                      |+++.++...    ..++++.||+.++.
T Consensus       416 ~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          416 PGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             BTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            9988666332    34789999997754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.53  E-value=2.6e-09  Score=118.59  Aligned_cols=390  Identities=8%  Similarity=0.008  Sum_probs=249.3

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC
Q psy3640         190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG  268 (616)
Q Consensus       190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~  268 (616)
                      |.++..+++|.+.+ |+.++.+..||..+++..... ..+...|.++...+++.+..++.++-+..||..+++.......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~  253 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHS  253 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecC
Confidence            88898888876555 666556899998877654321 2245679999988888888888776799999888765433221


Q ss_pred             -------CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----------eceeeEEEcCCCCEEEEEeCC
Q psy3640         269 -------HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----------GHSAEVTFSPDQSTFCSCSMD  331 (616)
Q Consensus       269 -------h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~~~~l~~~~~d  331 (616)
                             ....|.++... +++.+. .|+.+ -|.+|+..+++......          .....+...+++. +..|+.+
T Consensus       254 ~~~~~~l~~~~i~~i~~d-~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~  329 (795)
T 4a2l_A          254 PSNPKSISSNYIRSLAMD-SQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF  329 (795)
T ss_dssp             TTCTTSCSCSBEEEEEEC-TTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred             CCCccccCCCeEEEEEEc-CCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence                   23579999887 555544 45555 58889987775443321          1123345566655 5667777


Q ss_pred             CcEEEEECCCCceeEEee------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         332 HTARIFNTNSGQEMHTLK------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       332 g~i~i~d~~~~~~~~~~~------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      +-|..|+..++.......      .....|.++...++|+ |..|+.++-|..|+....                .....
T Consensus       330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~----------------~~~~~  392 (795)
T 4a2l_A          330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQ----------------RFTSY  392 (795)
T ss_dssp             SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTC----------------CEEEE
T ss_pred             CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCC----------------cEEEE
Confidence            778889876554322111      1245699999988876 556787878999987521                11111


Q ss_pred             E--------ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee----cCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640         406 L--------TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK----NHEDEVLDIAFDYSGSKLATASSD  473 (616)
Q Consensus       406 ~--------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~l~~~~~~~~l~~~~~d  473 (616)
                      .        ......|.+++..+++..|..|+.++-+..||..+++......    .....|.++..+++|.+.+.. . 
T Consensus       393 ~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-  470 (795)
T 4a2l_A          393 TLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-  470 (795)
T ss_dssp             CCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-
T ss_pred             ecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-
Confidence            0        0123568888888888867778877789999998876433221    134579999999888765544 4 


Q ss_pred             CcEEEEecCCceeeeeEEecc----CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee-------cccc
Q psy3640         474 QTANLWTVGGAVELLQTFYGH----SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY-------GHSN  542 (616)
Q Consensus       474 g~i~iwd~~~~~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~h~~  542 (616)
                      +.+..|+..+....  .+...    ......|.++..+++|.+.+...  +.+..|+..+...   .+.       ....
T Consensus       471 ~Gl~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~---~~~~~~~~~~l~~~  543 (795)
T 4a2l_A          471 SALVRFNPEQRSFT--TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI---QKASILPVSNVTKL  543 (795)
T ss_dssp             SCEEEEETTTTEEE--ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE---EECCCSCSCGGGGS
T ss_pred             CceeEEeCCCCeEE--EccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE---EEecCCCCCCCCCC
Confidence            45888988764221  11111    11224578888998888666544  5688888866422   221       1345


Q ss_pred             CEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec--c-CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         543 EVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK--A-HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       543 ~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~--~-h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      .|.++...++|++.++. .. -+..||..+++....-.  + ....|.++...++|.+.+++ .. -|..|+..+
T Consensus       544 ~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~-Gl~~~~~~~  614 (795)
T 4a2l_A          544 FTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NR-GISCFNPET  614 (795)
T ss_dssp             CEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TT-EEEEEETTT
T ss_pred             eeEEEEECCCCCEEEEe-CC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CC-ceEEEcCCC
Confidence            78999999998855543 44 58889987765443211  1 13468888888888766655 34 456666543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.52  E-value=7e-12  Score=125.88  Aligned_cols=282  Identities=12%  Similarity=0.039  Sum_probs=193.4

Q ss_pred             CCCCEEEEEECC-----CcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeCCCC
Q psy3640         197 KFGTRCLTGSYD-----RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDIKSG  260 (616)
Q Consensus       197 ~~g~~lasgs~d-----g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~~~~  260 (616)
                      ++++++.+....     +.|.++|..+++.+.++..-..+  .++++||++.+ ++.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            577777766553     69999999999999999866666  89999999944 333          4679999999999


Q ss_pred             ceEEEeeCC-------CCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEEeeeceeeEEEcCC-CCEEEEEeC
Q psy3640         261 HEICTYRGH-------QNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTYRGHSAEVTFSPD-QSTFCSCSM  330 (616)
Q Consensus       261 ~~~~~~~~h-------~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~l~~~~~  330 (616)
                      +.+..+.-.       ......+.|+ +++++++++..  ++.|.+.|+.+++.+.++..... ....|+ ...+++.+.
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR  237 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred             cEEEEEECCCccccccCCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence            998877521       1234578898 88999998874  57899999999999888765332 233343 356667777


Q ss_pred             CCcEEEEECCCCceeEEe----ecCCcCE-EEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         331 DHTARIFNTNSGQEMHTL----KAHTGPV-ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~----~~~~~~v-~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      ||.+.+.+..+++.....    .....++ ..+.+.+++..++..+..+.+.+.|............. ...........
T Consensus       238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~-~~~~~~i~~g~  316 (426)
T 3c75_H          238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIE-ALTEAERADDW  316 (426)
T ss_dssp             TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEE-SSCTTTGGGTE
T ss_pred             CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeee-ecccccccccc
Confidence            888888888666554321    1111121 23567889888888888899999998521100000000 00000000000


Q ss_pred             EecCccceeEEEEccCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC-EEEEEe-CC
Q psy3640         406 LTGHSQEISNCLFNFSNSMIASSSL----------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS-KLATAS-SD  473 (616)
Q Consensus       406 ~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~-~l~~~~-~d  473 (616)
                         .......++++++++.+++...          ++.|.++|..+.+.+.++.. ......++|+|+++ +++++. .+
T Consensus       317 ---~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s  392 (426)
T 3c75_H          317 ---RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDAEPLLYALSAGT  392 (426)
T ss_dssp             ---EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTT
T ss_pred             ---ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCC
Confidence               0111224688999887777642          35799999999999998863 33588999999999 888888 58


Q ss_pred             CcEEEEecCCceee
Q psy3640         474 QTANLWTVGGAVEL  487 (616)
Q Consensus       474 g~i~iwd~~~~~~~  487 (616)
                      +.|.++|..+....
T Consensus       393 ~~VsVID~~t~kvv  406 (426)
T 3c75_H          393 QTLHIYDAATGEEL  406 (426)
T ss_dssp             TEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCCEE
Confidence            99999999887443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.51  E-value=7.4e-10  Score=122.99  Aligned_cols=396  Identities=9%  Similarity=-0.001  Sum_probs=248.1

Q ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEecc-CCc-EEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe-
Q psy3640         190 LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGH-QNV-VYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY-  266 (616)
Q Consensus       190 i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h-~~~-I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~-  266 (616)
                      |.++..+++|...+. +. +.+..||..+++......++ ... |.++...+++.+..++.++.+..||..+++..... 
T Consensus       133 i~~i~~d~~g~lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~  210 (795)
T 4a2l_A          133 VNGIEEISPEQLLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP  210 (795)
T ss_dssp             CCEEEEEETTEEEEE-ET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC-
T ss_pred             EEEEEECCCCCEEEE-EC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC
Confidence            888998888876554 44 45899998776433211111 123 88898888888888887767999998877654321 


Q ss_pred             eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee----------ceeeEEEcCCCCEEEEEeCCCcEEE
Q psy3640         267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG----------HSAEVTFSPDQSTFCSCSMDHTARI  336 (616)
Q Consensus       267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~~~~l~~~~~dg~i~i  336 (616)
                      ..+...|.++... +++ .+..++.++-+..||..+++.......          ....+...+++. +..|+.+ -|.+
T Consensus       211 ~~~~~~i~~i~~d-~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~-Gl~~  286 (795)
T 4a2l_A          211 ILGTKQIQAILQQ-SPT-RIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNR-LWIGTFN-DLNI  286 (795)
T ss_dssp             ---CCCEEEEEEE-ETT-EEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSC-EEEEESS-CEEE
T ss_pred             CCCCCeeEEEEEc-CCC-CEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCC-EEEEeCC-hhhe
Confidence            1235678888876 444 455566555588999887654433211          123345566665 4455555 5889


Q ss_pred             EECCCCceeEEeec-------CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         337 FNTNSGQEMHTLKA-------HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       337 ~d~~~~~~~~~~~~-------~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                      ||..+++.......       ....|.++...++|+ +..|+.++-|..|+.....-..  ...     ...   ...-.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~--~~~-----~~~---~~~l~  355 (795)
T 4a2l_A          287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN--IRN-----IPY---KNSLS  355 (795)
T ss_dssp             EETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE--ECC-----CTT---SSSCS
T ss_pred             EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE--EcC-----CCC---CCCCC
Confidence            99887664433211       235799999998876 6667777889999865221000  000     000   00012


Q ss_pred             ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec--------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         410 SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN--------HEDEVLDIAFDYSGSKLATASSDQTANLWTV  481 (616)
Q Consensus       410 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  481 (616)
                      ...|.++...+++. +..|+.++-+..||..++........        ....|.+++.++++..|..|+.++.+..|+.
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~  434 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR  434 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence            34578888877776 45577777799999887654332211        2467999999988885777888778999998


Q ss_pred             CCceeeeeEEec--cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee------ccccCEEEEEEecCC
Q psy3640         482 GGAVELLQTFYG--HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY------GHSNEVSKVSFHPTG  553 (616)
Q Consensus       482 ~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~h~~~v~~l~~spdg  553 (616)
                      .++..  ..+..  .......|.++..+++|.+.+.. . +.+.+|+..+. .......      -....|.++...++|
T Consensus       435 ~~~~~--~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g  509 (795)
T 4a2l_A          435 NSGQV--ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQR-SFTTIEKEKDGTPVVSKQITTLFRDSHK  509 (795)
T ss_dssp             TTCCE--EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTT-EEEECCBCTTCCBCCCCCEEEEEECTTC
T ss_pred             CCCcE--EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCC-eEEEccccccccccCCceEEEEEECCCC
Confidence            76422  11211  11223468888888888765554 4 56888998764 2221111      123578999999888


Q ss_pred             CEEEEEECCCcEEEecCCcCeeeeEec-------cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         554 KLVLSGSQDTTCRLWSTESGECIQVLK-------AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       554 ~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      ++.+.. . +-+..|+..+++.  .+.       .+...|.++...++|.+.++.. . -+..|+..+
T Consensus       510 ~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~  571 (795)
T 4a2l_A          510 RLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKD  571 (795)
T ss_dssp             CEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTT
T ss_pred             CEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCC
Confidence            765544 4 4588899877765  222       2345699999888888665443 3 467777654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.51  E-value=4.3e-11  Score=120.45  Aligned_cols=299  Identities=9%  Similarity=0.028  Sum_probs=197.9

Q ss_pred             CCCEEEEEECCCcEEEEECCCCcEEEEEecc---------CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC
Q psy3640         198 FGTRCLTGSYDRTCKLWDIKSGHEICTYRGH---------QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG  268 (616)
Q Consensus       198 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h---------~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~  268 (616)
                      ++..+++++.++.|..+|.++|+.+......         ...+.+.....++.+++++.++.|..+|..+|+.+.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            3678888899999999999999988776642         2334333334466778899999999999999999888765


Q ss_pred             CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE------EEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640         269 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV------TFSPDQSTFCSCSMDHTARIFNTNSG  342 (616)
Q Consensus       269 h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v------~~~~~~~~l~~~~~dg~i~i~d~~~~  342 (616)
                      ...........   +..++.++.++.+..+|..+++.+..+.......      .....+..+++++.++.+..+|..++
T Consensus       132 ~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          132 AGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             SSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC
T ss_pred             CCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC
Confidence            44322222333   5688889999999999999998887765432221      00112457888888999999999999


Q ss_pred             ceeEEeecCCcC----EEE---EEEcC--CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640         343 QEMHTLKAHTGP----VIS---LQFSS--DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI  413 (616)
Q Consensus       343 ~~~~~~~~~~~~----v~~---l~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  413 (616)
                      +.+.........    +..   +...|  .+..+++++.++.+..+|..                +.+.......  ...
T Consensus       209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~----------------tG~~~w~~~~--~~~  270 (376)
T 3q7m_A          209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR----------------SGQIMWKREL--GSV  270 (376)
T ss_dssp             CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT----------------TCCEEEEECC--CCE
T ss_pred             cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC----------------CCcEEeeccC--CCC
Confidence            988776532110    000   11111  34678888889999999986                3333333221  122


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEe
Q psy3640         414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY  492 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  492 (616)
                      ..+..  ++..++.++.++.+..+|..+++........ ...+.....  .+..+++++.+|.+..+|..++........
T Consensus       271 ~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          271 NDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             EEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            23332  4677888888999999999999988776522 222222233  256888899999999999988754433322


Q ss_pred             ccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640         493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWT  526 (616)
Q Consensus       493 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd  526 (616)
                      ... .....  ...  .+..|++++.+|.+..|+
T Consensus       347 ~~~-~~~~~--~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          347 DSS-GFQTE--PVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             CTT-CBCSC--CEE--ETTEEEEEBTTSCEEEEE
T ss_pred             CCC-cceeC--CEE--ECCEEEEEeCCCEEEEEe
Confidence            111 11110  111  356788899999998886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.50  E-value=1.3e-11  Score=125.26  Aligned_cols=238  Identities=10%  Similarity=0.072  Sum_probs=164.5

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC
Q psy3640         353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG  432 (616)
Q Consensus       353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  432 (616)
                      .....++|+++++++++...++.|++||..                .......... ..... ++++++++.++++..++
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~----------------~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~  192 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVD----------------DNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEG  192 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETT----------------TTEEEEEEET-CCBCB-CEECTTSSEEEEEBSST
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECC----------------CCEEEEeecc-CCCCc-eeEecCCCcEEEEecCC
Confidence            357899999999877777778999999985                3333333222 23333 89999999999988866


Q ss_pred             --cEEEEeCCCCeEEEEe----ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeee--EEEE
Q psy3640         433 --TAKLWDVRTMCCFYTL----KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK--VLDI  504 (616)
Q Consensus       433 --~i~iwd~~~~~~~~~~----~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--i~~~  504 (616)
                        .|.+++...+.....+    ......+.+++++|++..|+.+..++.|..|+..+.................  ...+
T Consensus       193 ~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~i  272 (409)
T 3hrp_A          193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYL  272 (409)
T ss_dssp             TCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEE
T ss_pred             CceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccE
Confidence              7999988765443333    2245667889999965566667778899999987653222110011111111  1278


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEeeccc---------------cCEEEEEEecCCCEEEEEE-CCCcEEE
Q psy3640         505 AFDYS-GSKLATASSDQTAKLWTVGGAVELLQTFYGHS---------------NEVSKVSFHPTGKLVLSGS-QDTTCRL  567 (616)
Q Consensus       505 ~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~---------------~~v~~l~~spdg~~l~s~s-~dg~i~i  567 (616)
                      +++|+ +.++++-..++.|+.|+....   ...+.++.               .....++++|+|+++++-+ .++.|+.
T Consensus       273 a~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          273 IYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence            99995 555556666889999998764   22233332               3478999999999777777 7899999


Q ss_pred             ecCCcCeeeeEeccC---------------cccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640         568 WSTESGECIQVLKAH---------------EDDVFSCGFNYNGDTIITASKDNTCCIWRS  612 (616)
Q Consensus       568 wd~~~~~~~~~~~~h---------------~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~  612 (616)
                      |++.++... ++.++               -.....++++++|.++++-..++.|+.+++
T Consensus       350 ~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          350 LDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            998788643 34333               245889999999888888888888888765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.50  E-value=9.2e-11  Score=113.77  Aligned_cols=227  Identities=12%  Similarity=0.104  Sum_probs=154.4

Q ss_pred             CcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC
Q psy3640         352 TGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL  430 (616)
Q Consensus       352 ~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  430 (616)
                      ..-..+..|+++++ ++++...++.|..||..                .... ..+ .....+.+++++++++++++ . 
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~----------------~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-   71 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSF----------------TKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-   71 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETT----------------TCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECC----------------CCcE-EEE-eCCCceEEEEECCCCCEEEE-E-
Confidence            34456889999654 55566668899999986                2222 222 23467889999999995554 4 


Q ss_pred             CCcEEEEeCCCCeEEEEeec----CCCCEEEEEEcCCCCEEEEEeCC---------CcEEEEecCCceeeeeEEeccCCC
Q psy3640         431 DGTAKLWDVRTMCCFYTLKN----HEDEVLDIAFDYSGSKLATASSD---------QTANLWTVGGAVELLQTFYGHSNE  497 (616)
Q Consensus       431 dg~i~iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~  497 (616)
                      ++.|.+||..+++.......    ....+.+++++|+|+++++....         ..-.+|.+...........    .
T Consensus        72 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----~  147 (297)
T 3g4e_A           72 GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD----Q  147 (297)
T ss_dssp             TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE----E
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee----c
Confidence            56799999988865433322    12357899999999977654322         2345555443222211111    1


Q ss_pred             eeeEEEEEEcCCCCEEEEE-eCCCcEEEEecC--Cce----EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640         498 VSKVLDIAFDYSGSKLATA-SSDQTAKLWTVG--GAV----ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       498 ~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~--~~~----~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~  570 (616)
                      ......++|+|+++.|+.+ +.++.|.+|++.  ++.    .....+..+......++++++|++.++...++.|..||.
T Consensus       148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            1234578999999977554 557899999973  321    222333334567889999999988888878889999999


Q ss_pred             CcCeeeeEeccCcccEEEEEEe-eCCCEEEEee
Q psy3640         571 ESGECIQVLKAHEDDVFSCGFN-YNGDTIITAS  602 (616)
Q Consensus       571 ~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~t~s  602 (616)
                      ++|+.+..+..+...+++++|. |+++.|..++
T Consensus       228 ~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          228 VTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred             CCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence            9999999998887789999999 8887665444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=2.8e-12  Score=127.28  Aligned_cols=272  Identities=8%  Similarity=-0.021  Sum_probs=177.2

Q ss_pred             cceEEEEECCCCCEEEEEEC--CCcEEEEECCCCcEEEEEe-------ccCCcEEEEEEcCCCCEEEEEC------CCcE
Q psy3640         188 LPLTNITFDKFGTRCLTGSY--DRTCKLWDIKSGHEICTYR-------GHQNVVYAVAFSEPYGCLTGSY------DRTC  252 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~--dg~i~iwd~~~~~~~~~~~-------~h~~~I~~l~fs~~~~lls~s~------d~~I  252 (616)
                      ..+..++++|+|+.+++...  ++.++||.+.+++. ..+.       .|-..+..+++++++++.....      ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            78999999999999888642  34355665555543 3221       3456899999999998765543      5799


Q ss_pred             EEEeCCCCceEEEeeCC------CCcEEEEEEeCCCCCEEEEEE---CCCeEEEEeCCCcceeEEeeecee----eEEEc
Q psy3640         253 KLWDIKSGHEICTYRGH------QNVVYAVAFSEPYGDKILTGS---FDKTLKLWASAKEECIQTYRGHSA----EVTFS  319 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h------~~~V~~l~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~  319 (616)
                      .+||+.+++.+..+...      ...+..+++++.++..+++-+   .++.|.+||..+++....+.++..    ...+.
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99999999977766532      235688999843454555555   678999999998887666644211    13445


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccC
Q psy3640         320 PDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS  399 (616)
Q Consensus       320 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  399 (616)
                      +++..+.+...+|.+..|.              ..+..++|+|+++.|+++..++. ++|.+...............   
T Consensus       176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~---  237 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAEL---  237 (343)
T ss_dssp             ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHH---
T ss_pred             ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhh---
Confidence            5666666666677665442              23578999999999988887663 44544321000000000000   


Q ss_pred             CcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640         400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSGSKLATASSDQTANL  478 (616)
Q Consensus       400 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~i  478 (616)
                      ...+. ..++......++++++|.++++...++.|.+||..+++....... ....+.++++.+++.++++.+..+.+.+
T Consensus       238 ~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~  316 (343)
T 2qe8_A          238 GSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAP  316 (343)
T ss_dssp             HTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred             hcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccc
Confidence            00011 112333556789999999999988899999999856654333332 2456899999999888887766554433


Q ss_pred             E
Q psy3640         479 W  479 (616)
Q Consensus       479 w  479 (616)
                      |
T Consensus       317 f  317 (343)
T 2qe8_A          317 L  317 (343)
T ss_dssp             G
T ss_pred             c
Confidence            3

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.47  E-value=1.5e-12  Score=128.82  Aligned_cols=173  Identities=12%  Similarity=0.066  Sum_probs=139.3

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCc----------EEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCC
Q psy3640         189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH----------EICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIK  258 (616)
Q Consensus       189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~----------~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~  258 (616)
                      +++.+++++.+.++++|+.++ +++|++++.+          .......+.. |+.++|  ++.+++.+.++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence            699999999999999999985 6669875433          1112234666 999999  7776655599999999998


Q ss_pred             CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEE
Q psy3640         259 SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFN  338 (616)
Q Consensus       259 ~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d  338 (616)
                      +.........|...+.++.+.++   .+++++.||.+.+||+.++.... ......+++|+|+|  ++.|..||.+++|+
T Consensus       115 sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~  188 (388)
T 1xip_A          115 ELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQSFA  188 (388)
T ss_dssp             STTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEEEEE
T ss_pred             hhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEEEEc
Confidence            88777777788889999988754   39999999999999999887654 55677788999999  78899999999999


Q ss_pred             CCCCce--eEEe------e---cCCcCEEEEEEcCCCCEEEEEE
Q psy3640         339 TNSGQE--MHTL------K---AHTGPVISLQFSSDRNMLITGS  371 (616)
Q Consensus       339 ~~~~~~--~~~~------~---~~~~~v~~l~~~~~~~~l~~g~  371 (616)
                      ...++.  ..++      .   +|...|.++.|.+++.++++-.
T Consensus       189 ~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          189 WRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            887775  5555      2   3678899999999988887643

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.46  E-value=2.3e-10  Score=115.16  Aligned_cols=298  Identities=9%  Similarity=0.038  Sum_probs=193.7

Q ss_pred             CCEEEEEECCCeEEEEeCCCcceeEEeeece---------eeE--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecC
Q psy3640         283 GDKILTGSFDKTLKLWASAKEECIQTYRGHS---------AEV--TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH  351 (616)
Q Consensus       283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------~~v--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  351 (616)
                      +..+++++.++.|..+|..+++.+-.+....         ..+  ....++..+++++.++.|..+|..+|+.+......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~  132 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA  132 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence            6788888889999999999998876655421         112  23335678888999999999999999998877654


Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce-----eEEEEccCCCEEE
Q psy3640         352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI-----SNCLFNFSNSMIA  426 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~  426 (616)
                      .........  .+..+++++.++.+..+|..                +++............     ......  +..++
T Consensus       133 ~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~----------------tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~  192 (376)
T 3q7m_A          133 GEALSRPVV--SDGLVLIHTSNGQLQALNEA----------------DGAVKWTVNLDMPSLSLRGESAPTTA--FGAAV  192 (376)
T ss_dssp             SCCCSCCEE--ETTEEEEECTTSEEEEEETT----------------TCCEEEEEECCC-----CCCCCCEEE--TTEEE
T ss_pred             CceEcCCEE--ECCEEEEEcCCCeEEEEECC----------------CCcEEEEEeCCCCceeecCCCCcEEE--CCEEE
Confidence            322222222  24578888899999999986                333333332221110     111121  45678


Q ss_pred             EEeCCCcEEEEeCCCCeEEEEeecCCCC----EE---EEEEcC--CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCC
Q psy3640         427 SSSLDGTAKLWDVRTMCCFYTLKNHEDE----VL---DIAFDY--SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE  497 (616)
Q Consensus       427 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~---~l~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  497 (616)
                      +++.++.+..+|..+++.+.........    +.   .+...|  .+..++.++.++.+..+|..++.........    
T Consensus       193 ~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----  268 (376)
T 3q7m_A          193 VGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----  268 (376)
T ss_dssp             ECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC----
T ss_pred             EEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC----
Confidence            8888999999999999888776532110    00   011111  2467888888999999999877544332211    


Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeee
Q psy3640         498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ  577 (616)
Q Consensus       498 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~  577 (616)
                        ....+.  .++..+++++.++.+..+|..++.............+.....  .+..|+.++.+|.+.++|..+|+.+.
T Consensus       269 --~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~  342 (376)
T 3q7m_A          269 --SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA  342 (376)
T ss_dssp             --CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             --CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence              122222  247788888999999999998875544332122222333333  24588889999999999999999988


Q ss_pred             EeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       578 ~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      ........+.+.... .+..|+.++.||.|..|+
T Consensus       343 ~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          343 QQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred             EEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence            776543433322112 356788899999999886

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=8e-11  Score=119.35  Aligned_cols=236  Identities=9%  Similarity=0.084  Sum_probs=162.0

Q ss_pred             ceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEecccccCCcc
Q psy3640         312 HSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--SIVVWDIQYQFGTRN  389 (616)
Q Consensus       312 ~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~  389 (616)
                      ....++++++++++++...++.|+.||..++...........+ . ++|+++++.|+++..++  .|.+++...      
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~------  203 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKAS------  203 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGG------
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCC------
Confidence            3456789999997777777899999999887766555443333 3 99999999999888766  688887652      


Q ss_pred             cccccccccCCcceEEE---ec-CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE----eecCCCCE--EEEE
Q psy3640         390 AYAESTYRASHKPIHIL---TG-HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT----LKNHEDEV--LDIA  459 (616)
Q Consensus       390 ~~~~~~~~~~~~~~~~~---~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v--~~l~  459 (616)
                                ......+   .. .......++++|++..|+++..++.|+.||..++.....    ..+....-  ..++
T Consensus       204 ----------~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia  273 (409)
T 3hrp_A          204 ----------GWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLI  273 (409)
T ss_dssp             ----------TTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEE
T ss_pred             ----------CceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEE
Confidence                      1111122   12 345677899999655566677788999999987753322    11222222  3899


Q ss_pred             EcCC-CCEEEEEeCCCcEEEEecCCceeeeeEEeccC------------CCeeeEEEEEEcCCCCEEEEEe-CCCcEEEE
Q psy3640         460 FDYS-GSKLATASSDQTANLWTVGGAVELLQTFYGHS------------NEVSKVLDIAFDYSGSKLATAS-SDQTAKLW  525 (616)
Q Consensus       460 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vw  525 (616)
                      |+|+ +.++++-..++.|+.|+......   .+.+..            ........++++++|+++++-. .++.|+.|
T Consensus       274 ~~p~~g~lyv~d~~~~~I~~~~~~g~~~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          274 YYFVDSNFYMSDQNLSSVYKITPDGECE---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCCEE---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEecCCCEE---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence            9995 55566666778899999876422   222221            1123467899999999877777 88999999


Q ss_pred             ecCCceEEeEEeecc---------------ccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640         526 TVGGAVELLQTFYGH---------------SNEVSKVSFHPTGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       526 d~~~~~~~~~~~~~h---------------~~~v~~l~~spdg~~l~s~s~dg~i~iwd~  570 (616)
                      +..++.  +..+.++               -.....++++|+|.++++-..++.|+.+++
T Consensus       351 ~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          351 DILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             ETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            976542  3334333               245889999999888888778888887765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.42  E-value=6.7e-11  Score=128.08  Aligned_cols=318  Identities=10%  Similarity=0.084  Sum_probs=195.9

Q ss_pred             CCEEEEEECCCeEEEEeCCCcceeEEeeeceee----------E--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q psy3640         283 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAE----------V--TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA  350 (616)
Q Consensus       283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------v--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  350 (616)
                      +..+++++.++.|.-+|..+|+.+-++......          +  .....+..+++++.|+.|..+|..+|+.+.....
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~  149 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDT  149 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence            577888888899999999999988777543210          0  0112467888999999999999999999988764


Q ss_pred             C--CcCEEEEEEcC--CCCEEEEEE------CCCcEEEEecccccCCccccccccccc---CCcce----EEE-------
Q psy3640         351 H--TGPVISLQFSS--DRNMLITGS------FDSSIVVWDIQYQFGTRNAYAESTYRA---SHKPI----HIL-------  406 (616)
Q Consensus       351 ~--~~~v~~l~~~~--~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~----~~~-------  406 (616)
                      .  ......+..+|  .+..+++++      .+|.|+.||..+....-..........   ....+    ...       
T Consensus       150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~  229 (689)
T 1yiq_A          150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE  229 (689)
T ss_dssp             CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred             cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence            2  11111111112  123455543      368899999874322111000000000   00000    000       


Q ss_pred             -ecCccceeEEEEccCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEeecC--C-------CCEEE
Q psy3640         407 -TGHSQEISNCLFNFSNSMIASSSLDGT-------------------AKLWDVRTMCCFYTLKNH--E-------DEVLD  457 (616)
Q Consensus       407 -~~~~~~i~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~--~-------~~v~~  457 (616)
                       .+.......++++++...++.++.++.                   |..+|.++++.+..++..  .       .++..
T Consensus       230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l  309 (689)
T 1yiq_A          230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL  309 (689)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred             cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence             011111235788888899999988764                   999999999999887642  1       12222


Q ss_pred             EEEcCCCC---EEEEEeCCCcEEEEecCCceeeeeEEeccC------------------------CCee-----------
Q psy3640         458 IAFDYSGS---KLATASSDQTANLWTVGGAVELLQTFYGHS------------------------NEVS-----------  499 (616)
Q Consensus       458 l~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~~~~-----------  499 (616)
                      .....+|+   .++.++.+|.++++|..++..+........                        ....           
T Consensus       310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~  389 (689)
T 1yiq_A          310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH  389 (689)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS
T ss_pred             EeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc
Confidence            22223554   788899999999999988765432211110                        0000           


Q ss_pred             eEEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEecCCceEEe
Q psy3640         500 KVLDIAFDYSGSKLATASS---------------------------------------------DQTAKLWTVGGAVELL  534 (616)
Q Consensus       500 ~i~~~~~s~~~~~l~~~~~---------------------------------------------dg~i~vwd~~~~~~~~  534 (616)
                      .-..++++|+..++++...                                             +|.+..||+.++....
T Consensus       390 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W  469 (689)
T 1yiq_A          390 DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW  469 (689)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE
T ss_pred             CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe
Confidence            0112688898888887632                                             3779999999875444


Q ss_pred             EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccE-EEEEEeeCCC-EEEEee
Q psy3640         535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDV-FSCGFNYNGD-TIITAS  602 (616)
Q Consensus       535 ~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V-~~l~~s~~~~-~l~t~s  602 (616)
                      +. ..+ .+...-.++..+.++++|+.||.++.||.++|+.+..++.+.+.+ ..+.|..+|+ ++++.+
T Consensus       470 ~~-~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~  537 (689)
T 1yiq_A          470 EV-PYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMA  537 (689)
T ss_dssp             EE-EES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             Ec-cCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEe
Confidence            43 322 333444666788899999999999999999999998887553322 3466788886 444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=5.3e-08  Score=107.82  Aligned_cols=410  Identities=12%  Similarity=0.040  Sum_probs=246.0

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-e---c---cCCcEEEEEEcC--CCCEEEEECCCcEEEEeCC
Q psy3640         188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-R---G---HQNVVYAVAFSE--PYGCLTGSYDRTCKLWDIK  258 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~---~---h~~~I~~l~fs~--~~~lls~s~d~~I~iwd~~  258 (616)
                      ..|.++..+++|..|-.|+.++-+..||..+.+..... .   .   ....|.++....  ++.+..++.++.|..+|..
T Consensus        66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~gl~~~~~~  145 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIA  145 (781)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSSCEEEEETT
T ss_pred             cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCCCeeEEECC
Confidence            46999999998874666787756999998877654321 1   0   123688998888  7887788867779999988


Q ss_pred             CCceEEEee-----CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----------eceeeEEEcCCCC
Q psy3640         259 SGHEICTYR-----GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----------GHSAEVTFSPDQS  323 (616)
Q Consensus       259 ~~~~~~~~~-----~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~~~  323 (616)
                      +++......     .....|.++... .+ ..+..++.++-+..+|..+++......          .....+...+++.
T Consensus       146 ~~~~~~~~~~~~~~l~~~~i~~i~~d-~~-g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~  223 (781)
T 3v9f_A          146 TGKFTHYNKSTVPALPSEQTWTATEA-ED-GKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN  223 (781)
T ss_dssp             TTEEEEESTTTCTTCSCCCEEEEEEE-ET-TEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC
T ss_pred             CCeEEeeccCcccCCCccceEEEEEC-CC-CCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC
Confidence            776543211     123568888775 44 455557777678899988765432211          1223344555665


Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEee-------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccc-ccc
Q psy3640         324 TFCSCSMDHTARIFNTNSGQEMHTLK-------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA-EST  395 (616)
Q Consensus       324 ~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~  395 (616)
                      +. .|+.+ -+.+||..+++......       .....|.++...++|. +..|+..+-|.++|.....-...... ...
T Consensus       224 lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~  300 (781)
T 3v9f_A          224 IW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEF  300 (781)
T ss_dssp             EE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEE
T ss_pred             EE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeecccccc
Confidence            44 45555 58899987665432211       1245689999887765 66677656788888753211000000 000


Q ss_pred             cccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee---------cCCCCEEEEEEcCCCCE
Q psy3640         396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK---------NHEDEVLDIAFDYSGSK  466 (616)
Q Consensus       396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~~~~~~~  466 (616)
                      ......   ........|.++....++. +..|+.++-|..++..+........         .....|.+++.+++|. 
T Consensus       301 ~~~~~~---~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-  375 (781)
T 3v9f_A          301 IREGDN---NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-  375 (781)
T ss_dssp             ECBCSS---TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-
T ss_pred             ccCCCC---CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-
Confidence            000000   0011345678888887776 5566767778889887654322110         1235699999988875 


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee---ccccC
Q psy3640         467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY---GHSNE  543 (616)
Q Consensus       467 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~  543 (616)
                      |..|+.++-+..|+..+...... ..........|.++..++++.+.+ |+.++.+..++..++ .. ..+.   .....
T Consensus       376 lWigt~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~~-~~~~~~~~~~~~  451 (781)
T 3v9f_A          376 LWIGTDGGGINVFENGKRVAIYN-KENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK-KF-QIIELEKNELLD  451 (781)
T ss_dssp             EEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC-EE-EECCSTTTCCCC
T ss_pred             EEEEeCCCcEEEEECCCCeEEEc-cCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC-cE-EEeccCCCCCCe
Confidence            45566666788888765321111 111122335688888888776554 677777888988663 22 2222   13467


Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccC-----cccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         544 VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH-----EDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       544 v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      |.++...++|+ |..|+. +-+..||..+++........     ...|.++...++|.+.+....+| +..|+..+
T Consensus       452 v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~  524 (781)
T 3v9f_A          452 VRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDM  524 (781)
T ss_dssp             EEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTC
T ss_pred             EEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCC
Confidence            89998888876 444555 45889998877654333222     35699998888887655443344 66676543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.41  E-value=1.4e-10  Score=125.23  Aligned_cols=309  Identities=12%  Similarity=0.139  Sum_probs=200.2

Q ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEeccCCc-----------EEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640         199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-----------VYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR  267 (616)
Q Consensus       199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~-----------I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~  267 (616)
                      +..|++++.++.|.-+|..+|+.+-++......           -..+++ .++.+++++.|+.|..+|..+|+.+..+.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            567788888899999999999999887643210           112233 25567788999999999999999999887


Q ss_pred             CC-C----CcEEE-EEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEeeece----------------------
Q psy3640         268 GH-Q----NVVYA-VAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYRGHS----------------------  313 (616)
Q Consensus       268 ~h-~----~~V~~-l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~----------------------  313 (616)
                      .+ .    ..+.+ ....   +..++.++.      ++.|..+|..+|+.+-++....                      
T Consensus       156 ~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~  232 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRVF---KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS  232 (677)
T ss_dssp             TTTTCCSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred             CCcCcCcCcccccCcEEE---CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence            65 2    11211 1121   455666553      6999999999999887664311                      


Q ss_pred             -------------eeEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEeecCC---------
Q psy3640         314 -------------AEVTFSPDQSTFCSCSMDH-------------------TARIFNTNSGQEMHTLKAHT---------  352 (616)
Q Consensus       314 -------------~~v~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~---------  352 (616)
                                   ..++++|++..++.++.++                   .|..+|..+|+.+..++...         
T Consensus       233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~  312 (677)
T 1kb0_A          233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST  312 (677)
T ss_dssp             GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred             CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence                         1357889999999887664                   49999999999998876421         


Q ss_pred             cCEEEEEEcCCC---CEEEEEECCCcEEEEecccccCCccccccc-c----cccCCcceE------------EEecCc--
Q psy3640         353 GPVISLQFSSDR---NMLITGSFDSSIVVWDIQYQFGTRNAYAES-T----YRASHKPIH------------ILTGHS--  410 (616)
Q Consensus       353 ~~v~~l~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-~----~~~~~~~~~------------~~~~~~--  410 (616)
                      ....-+....+|   ..+++++.+|.++++|..+........... .    ......++.            ...+..  
T Consensus       313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~  392 (677)
T 1kb0_A          313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA  392 (677)
T ss_dssp             SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred             CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence            122223333467   678999999999999987442211100000 0    000000000            000000  


Q ss_pred             cceeEEEEccCCCEEEEEeCC-------------------------------------------CcEEEEeCCCCeEEEE
Q psy3640         411 QEISNCLFNFSNSMIASSSLD-------------------------------------------GTAKLWDVRTMCCFYT  447 (616)
Q Consensus       411 ~~i~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~iwd~~~~~~~~~  447 (616)
                      ..-..++++|+..++++...+                                           |.|..||+.+++.+..
T Consensus       393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~  472 (677)
T 1kb0_A          393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (677)
T ss_dssp             SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence            001256788888888776432                                           7899999999999888


Q ss_pred             eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE
Q psy3640         448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT  515 (616)
Q Consensus       448 ~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  515 (616)
                      +.. ..++....+...+..++.++.||.+++||..++..+.............   +.+..+|+.+++
T Consensus       473 ~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p---~~y~~~G~~~v~  536 (677)
T 1kb0_A          473 VEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVS  536 (677)
T ss_dssp             EEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEE
T ss_pred             cCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCC---EEEEeCCEEEEE
Confidence            763 3344455566678889999999999999999886655544443222222   455677765443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.41  E-value=2.9e-12  Score=126.48  Aligned_cols=298  Identities=14%  Similarity=0.083  Sum_probs=188.5

Q ss_pred             EEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece
Q psy3640         234 AVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS  313 (616)
Q Consensus       234 ~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~  313 (616)
                      ++....++.+..++.++.|..|| .+++.......+...+.++... +++ .+..++.+  +..+|. +++....+....
T Consensus        24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g-~l~v~t~~--l~~~d~-~g~~~~~~~~~~   97 (330)
T 3hxj_A           24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIG-KDG-TIYFGSDK--VYAINP-DGTEKWRFDTKK   97 (330)
T ss_dssp             CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEET-TTT-EECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred             CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEe-cCC-cEEEecCc--EEEECC-CCcEEEEEECCC
Confidence            34555678888888899999999 8898877666555556667664 444 45555554  888886 555443322211


Q ss_pred             ---eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640         314 ---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA  390 (616)
Q Consensus       314 ---~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  390 (616)
                         ....+.  +..+.+++.++.+..+|.. ++.......+...+.++...+++. +..++.++.+..+|..        
T Consensus        98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~--------  165 (330)
T 3hxj_A           98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD--------  165 (330)
T ss_dssp             ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT--------
T ss_pred             CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC--------
Confidence               112232  6678888889999999998 887777766666666777777776 6667778999999874        


Q ss_pred             ccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEE
Q psy3640         391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA  470 (616)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~  470 (616)
                               .............+.++...+++.+.+ ++  +.+..+| .+++...........+.++..+++|. +..+
T Consensus       166 ---------g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~  231 (330)
T 3hxj_A          166 ---------GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVT  231 (330)
T ss_dssp             ---------SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEE
T ss_pred             ---------CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEE
Confidence                     222223333344566666666776554 44  7899999 77777766665556677777777664 4445


Q ss_pred             eCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEe
Q psy3640         471 SSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFH  550 (616)
Q Consensus       471 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s  550 (616)
                      +.++.+..++.... ..                                     |          ........+..+.+.
T Consensus       232 t~~~gl~~~~~~g~-~~-------------------------------------~----------~~~~~~~~~~~~~~~  263 (330)
T 3hxj_A          232 SLDGHLYAINPDGT-EK-------------------------------------W----------RFKTGKRIESSPVIG  263 (330)
T ss_dssp             ETTTEEEEECTTSC-EE-------------------------------------E----------EEECSSCCCSCCEEC
T ss_pred             cCCCeEEEECCCCC-Ee-------------------------------------E----------EeeCCCCccccceEc
Confidence            56666666653221 10                                     0          111111112234444


Q ss_pred             cCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         551 PTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       551 pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      +++ .|..++.+|.+..+|. +++.+..+......+.++...++|. |..++.+|.+++...+.
T Consensus       264 ~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          264 NTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             TTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             CCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            455 5666777888889986 6777766665555566676666665 55588899998877654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=3e-08  Score=109.84  Aligned_cols=405  Identities=11%  Similarity=0.051  Sum_probs=242.0

Q ss_pred             cceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEEEEEec------cCCcEEEEEEcCCCCEEEEECCCcEEEEeCCC
Q psy3640         188 LPLTNITFDK--FGTRCLTGSYDRTCKLWDIKSGHEICTYRG------HQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKS  259 (616)
Q Consensus       188 ~~i~~v~~s~--~g~~lasgs~dg~i~iwd~~~~~~~~~~~~------h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~  259 (616)
                      ..|.++..++  +|. |..++.++.|..||..+++.. .+..      ....|.++...+++.+..++.++-+..||..+
T Consensus       115 ~~i~~i~~d~~~~g~-lwi~t~~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~  192 (781)
T 3v9f_A          115 NDVTHITSSVQAGKG-LWVCTYYRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLND  192 (781)
T ss_dssp             SCEEEEEECSSTTSE-EEEEESSSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTT
T ss_pred             CcceEEEecCccCCC-EEEEECCCCeeEEECCCCeEE-eeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCC
Confidence            3688998887  665 455664556889998776543 3321      23568888888888888888887799999888


Q ss_pred             CceEEEee-------CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----------eceeeEEEcCCC
Q psy3640         260 GHEICTYR-------GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----------GHSAEVTFSPDQ  322 (616)
Q Consensus       260 ~~~~~~~~-------~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~~  322 (616)
                      ++......       .....|.++... +++.+.+ |+.+ -+.+||..+++......          .....+...+++
T Consensus       193 ~~~~~~~~~~~~~~~l~~~~i~~i~~d-~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g  269 (781)
T 3v9f_A          193 KSVKHFVHDPQNPNSLPGNDVRCIYKD-TNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN  269 (781)
T ss_dssp             TEEEEECC--------CCSSEEEEEEC-TTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTS
T ss_pred             CceEeeecCCCCcccCCCCceeEEEEc-CCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC
Confidence            76433211       113568888876 5555444 5555 68899987765432211          112233444444


Q ss_pred             CEEEEEeCCCcEEEEECCCCceeEEee--------------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCc
Q psy3640         323 STFCSCSMDHTARIFNTNSGQEMHTLK--------------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTR  388 (616)
Q Consensus       323 ~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~  388 (616)
                       .+..|+..+-|.++|..+++......              .....|.++...++|+ |..|+.++-|..++.....-..
T Consensus       270 -~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~  347 (781)
T 3v9f_A          270 -KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT  347 (781)
T ss_dssp             -EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE
T ss_pred             -CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee
Confidence             56667775668899987765432111              2345799999988876 6667777788888865211000


Q ss_pred             ccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCEEEEEEcCCCC
Q psy3640         389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL---KNHEDEVLDIAFDYSGS  465 (616)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~~~~  465 (616)
                        .....   ....  ........|.++...+++. +..|+.++-+..||..++......   ......|.++..++++.
T Consensus       348 --~~~~~---~~~~--~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~  419 (781)
T 3v9f_A          348 --WSYSP---TQMN--ESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN  419 (781)
T ss_dssp             --EC-------CCC--SSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC
T ss_pred             --eccCc---cccc--cCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC
Confidence              00000   0000  0001234578888777766 445666667889998765332111   12346799999988876


Q ss_pred             EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc-----
Q psy3640         466 KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH-----  540 (616)
Q Consensus       466 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-----  540 (616)
                      +. .|+.++.+..++..+...  ..+.........|.++..++++.+.+ |+. +.+..++..+.. ........     
T Consensus       420 lW-igt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~-~~~~~~~~~~~~~  493 (781)
T 3v9f_A          420 LW-FGTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKK-VIHHYDTSNSQLL  493 (781)
T ss_dssp             EE-EEETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSS-CCEEECTTTSSCS
T ss_pred             EE-EEeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCe-EEecccCcccccc
Confidence            54 466667788888765421  11111122334677888888776544 455 568889876532 11111111     


Q ss_pred             ccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc---CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCC
Q psy3640         541 SNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA---HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       541 ~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~---h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~  615 (616)
                      ...|.++...++|++.+ |+.++-+..||..+++.......   ....|.++...++|.+.++. .+|.+..|+..++
T Consensus       494 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~  569 (781)
T 3v9f_A          494 ENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNF  569 (781)
T ss_dssp             CSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred             cceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence            35789999998887554 44434488899877654432211   23568899888888766544 4665588877543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.41  E-value=5.6e-10  Score=108.18  Aligned_cols=234  Identities=13%  Similarity=0.099  Sum_probs=156.7

Q ss_pred             eccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCc
Q psy3640         226 RGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE  303 (616)
Q Consensus       226 ~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~  303 (616)
                      ..+..-..+..|++++. ++ +...++.|..||..+++. ..+. ....+.+++++ ++++++++ . ++.|.+||..++
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~-~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALR-QSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEB-TTSSEEEE-E-TTEEEEEETTTT
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEEC-CCCCEEEE-E-CCeEEEEECCCC
Confidence            33445567888998654 44 666789999999998765 3333 45789999999 77885554 4 578999999887


Q ss_pred             ceeEEee-------eceeeEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEE
Q psy3640         304 ECIQTYR-------GHSAEVTFSPDQSTFCSCSMD---------HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNML  367 (616)
Q Consensus       304 ~~~~~~~-------~~~~~v~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l  367 (616)
                      +......       .....++++|++++.++....         ..-.+|.+........+..+......++|+|+++.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence            6543322       123457899999976654321         223455444322223333344456899999999876


Q ss_pred             EEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy3640         368 ITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY  446 (616)
Q Consensus       368 ~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  446 (616)
                      +.+ +.++.|.+|++........         .......+..+......+++.++|++.++...++.|..||..+++.+.
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~---------~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQIS---------NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEE---------EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEE
T ss_pred             EEecCCCCcEEEEeccCCCCccc---------CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEE
Confidence            554 5578899998741110000         011112222334566789999999888888888899999999999988


Q ss_pred             EeecCCCCEEEEEEc-CCCCEEEEEeCC
Q psy3640         447 TLKNHEDEVLDIAFD-YSGSKLATASSD  473 (616)
Q Consensus       447 ~~~~~~~~v~~l~~~-~~~~~l~~~~~d  473 (616)
                      .+..+...+++++|. |+++.|++++..
T Consensus       235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          235 TVKLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             EEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            888777889999998 888877766543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.40  E-value=8.3e-11  Score=127.09  Aligned_cols=296  Identities=9%  Similarity=0.070  Sum_probs=197.9

Q ss_pred             CCEEEEEECCCeEEEEeCCCcceeEEeeecee--------------eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q psy3640         283 GDKILTGSFDKTLKLWASAKEECIQTYRGHSA--------------EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL  348 (616)
Q Consensus       283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------------~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  348 (616)
                      +..+++++.++.|.-+|..+|+.+-++.....              .+++  ++..+++++.++.+..+|..+|+.+..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            56777778889999999999988877654321              1222  5678888999999999999999999888


Q ss_pred             ecC-C----cCEEE-EEEcCCCCEEEEEEC------CCcEEEEecccccCCcccccccccccCCcceEEEec--------
Q psy3640         349 KAH-T----GPVIS-LQFSSDRNMLITGSF------DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG--------  408 (616)
Q Consensus       349 ~~~-~----~~v~~-l~~~~~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  408 (616)
                      ..+ .    ..+.+ ...  .+..+++++.      ++.|+.+|..+..                .+.....        
T Consensus       155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~----------------~~W~~~~~~~~~~~~  216 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGE----------------RKWRWFSVPGDPSKP  216 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCC----------------EEEEEESSCCCTTSC
T ss_pred             cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCc----------------EEEEeccCCCCcccc
Confidence            754 2    11111 111  2345555543      6899999987432                2222211        


Q ss_pred             ------------------------CccceeEEEEccCCCEEEEEeCCC-------------------cEEEEeCCCCeEE
Q psy3640         409 ------------------------HSQEISNCLFNFSNSMIASSSLDG-------------------TAKLWDVRTMCCF  445 (616)
Q Consensus       409 ------------------------~~~~i~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~  445 (616)
                                              .......+++++++..++.++.++                   .|..+|.++++..
T Consensus       217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~  296 (677)
T 1kb0_A          217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK  296 (677)
T ss_dssp             CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred             ccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE
Confidence                                    111223577888889998887764                   4999999999998


Q ss_pred             EEeecCC---------CCEEEEEEcCCC---CEEEEEeCCCcEEEEecCCceeeeeEEeccCC-------CeeeE-----
Q psy3640         446 YTLKNHE---------DEVLDIAFDYSG---SKLATASSDQTANLWTVGGAVELLQTFYGHSN-------EVSKV-----  501 (616)
Q Consensus       446 ~~~~~~~---------~~v~~l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~~~~i-----  501 (616)
                      ..++...         ....-+....+|   ..++.++.+|.++++|..++............       ....+     
T Consensus       297 W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~  376 (677)
T 1kb0_A          297 WHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAA  376 (677)
T ss_dssp             EEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGG
T ss_pred             EEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeecccc
Confidence            8876421         112223333466   67899999999999999887654433221110       00001     


Q ss_pred             -------------------EEEEEcCCCCEEEEEeCC-------------------------------------------
Q psy3640         502 -------------------LDIAFDYSGSKLATASSD-------------------------------------------  519 (616)
Q Consensus       502 -------------------~~~~~s~~~~~l~~~~~d-------------------------------------------  519 (616)
                                         ..++++|++.++++...+                                           
T Consensus       377 ~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  456 (677)
T 1kb0_A          377 RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPF  456 (677)
T ss_dssp             GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCE
T ss_pred             CcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCc
Confidence                               146889998888876432                                           


Q ss_pred             CcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcc-cEEEEEEeeCCCEE
Q psy3640         520 QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED-DVFSCGFNYNGDTI  598 (616)
Q Consensus       520 g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l  598 (616)
                      |.|..||+.++....+..  +..++....+..++.++++++.||.+++||.++|+.+..+....+ ....+.|..+|+..
T Consensus       457 g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            779999998875544432  334455566777888999999999999999999999988875432 12335567888644


Q ss_pred             EE
Q psy3640         599 IT  600 (616)
Q Consensus       599 ~t  600 (616)
                      +.
T Consensus       535 v~  536 (677)
T 1kb0_A          535 VS  536 (677)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.39  E-value=3e-10  Score=122.95  Aligned_cols=298  Identities=12%  Similarity=0.081  Sum_probs=195.8

Q ss_pred             CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc----------E-EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640         240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------V-YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT  308 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  308 (616)
                      ++.+++++.++.|..+|..+|+.+..+..+...          + ..+++.   +..++.++.|+.|..+|..+|+.+-.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~v~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVW---KGKVYVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEE---CCEEEEEccCCEEEEEECCCCCEeee
Confidence            566778888999999999999999988644321          1 122333   57889999999999999999998877


Q ss_pred             eeec-e----eeEEEcC--CCCEEEEEe------CCCcEEEEECCCCceeEEeecCC-----------------------
Q psy3640         309 YRGH-S----AEVTFSP--DQSTFCSCS------MDHTARIFNTNSGQEMHTLKAHT-----------------------  352 (616)
Q Consensus       309 ~~~~-~----~~v~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~-----------------------  352 (616)
                      +... .    ..+..+|  .+..+++++      .+|.|..||..+|+.+..+....                       
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            6543 1    1111222  133445443      36899999999999988775211                       


Q ss_pred             --------cCEEEEEEcCCCCEEEEEECCCc-------------------EEEEecccccCCcccccccccccCCcceEE
Q psy3640         353 --------GPVISLQFSSDRNMLITGSFDSS-------------------IVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       353 --------~~v~~l~~~~~~~~l~~g~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                              .....++++|++.++++++.++.                   |..+|..                +++.+..
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~----------------TG~~~W~  290 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD----------------TGEYVWH  290 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT----------------TCCEEEE
T ss_pred             eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc----------------CCceeEe
Confidence                    01125788898899999887764                   8888887                4444444


Q ss_pred             Eec--Cc-------cceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCCC-C------------------
Q psy3640         406 LTG--HS-------QEISNCLFNFSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHED-E------------------  454 (616)
Q Consensus       406 ~~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~------------------  454 (616)
                      +..  |.       .+........+++   .++.++.+|.++++|.++++.+........ .                  
T Consensus       291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~  370 (689)
T 1yiq_A          291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA  370 (689)
T ss_dssp             EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred             eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence            432  11       1111112223554   788899999999999999998754332110 0                  


Q ss_pred             --------------------EEEEEEcCCCCEEEEEeC------------------------------------------
Q psy3640         455 --------------------VLDIAFDYSGSKLATASS------------------------------------------  472 (616)
Q Consensus       455 --------------------v~~l~~~~~~~~l~~~~~------------------------------------------  472 (616)
                                          -..++++|+..++++...                                          
T Consensus       371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~  450 (689)
T 1yiq_A          371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA  450 (689)
T ss_dssp             CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred             cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence                                112688888888777532                                          


Q ss_pred             ---CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEE
Q psy3640         473 ---DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF  549 (616)
Q Consensus       473 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~  549 (616)
                         +|.+..||+.++....+........     .-.+...+.++++++.||.++.||.+++..+.+...++....+-+.|
T Consensus       451 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~-----~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty  525 (689)
T 1yiq_A          451 KSWSGKLIAWDPVKQQAAWEVPYVTIFN-----GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY  525 (689)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEEESSSCC-----CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred             CCcceeEEEEECCCCCeEeEccCCCCcc-----CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence               3678999998876555443322111     12445678899999999999999999975554443343333355777


Q ss_pred             ecCCC-EEEEEEC
Q psy3640         550 HPTGK-LVLSGSQ  561 (616)
Q Consensus       550 spdg~-~l~s~s~  561 (616)
                      ..+|+ ++++.+.
T Consensus       526 ~~~G~qyv~~~~G  538 (689)
T 1yiq_A          526 SVDGEQYVTFMAG  538 (689)
T ss_dssp             EETTEEEEEEEEC
T ss_pred             EECCEEEEEEEec
Confidence            88887 4444443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.39  E-value=1.3e-11  Score=122.50  Aligned_cols=264  Identities=11%  Similarity=0.085  Sum_probs=165.7

Q ss_pred             eeeceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEe-------ecCCcCEEEEEEcCCCCEEEEEEC-----CC
Q psy3640         309 YRGHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTL-------KAHTGPVISLQFSSDRNMLITGSF-----DS  374 (616)
Q Consensus       309 ~~~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~g~~-----dg  374 (616)
                      +......++++++++.+++...  ++.+.+|.+.+++. ..+       ..+...+.+++++++++++++-..     ++
T Consensus        15 ~~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           15 LSLAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             ESSCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred             cCCCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence            3334455677888877776532  23233443334432 222       124467899999999876665433     57


Q ss_pred             cEEEEecccccCCcccccccccccCCcceEEEec------CccceeEEEEccCCCEE-EEEe---CCCcEEEEeCCCCeE
Q psy3640         375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG------HSQEISNCLFNFSNSMI-ASSS---LDGTAKLWDVRTMCC  444 (616)
Q Consensus       375 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~l-~~~~---~dg~i~iwd~~~~~~  444 (616)
                      .|.+||+.                +...+..+..      +......+++++++..+ ++..   .++.|.+||+.+++.
T Consensus        94 ~i~~~d~~----------------tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           94 KLVAWDTL----------------NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             EEEEEETT----------------TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             eEEEEECC----------------CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            89999986                3332333321      22346789999865554 4444   578899999998887


Q ss_pred             EEEeecCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC-cE
Q psy3640         445 FYTLKNHEDEVL-DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ-TA  522 (616)
Q Consensus       445 ~~~~~~~~~~v~-~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i  522 (616)
                      ...+..|..... ...+.++|..+.+.+.++.+..|..                  ....++++|+++.|+.+..++ .+
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~------------------~~~gia~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL------------------GVNGIVLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC------------------CEEEEEECTTSCEEEEEESSCSEE
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceec------------------ccceeEeccCCCEEEEEeCCCCeE
Confidence            766654322110 1334456767777777877766542                  145689999999998888766 45


Q ss_pred             EEEecC---Cc----eEEe--EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEecc-CcccEEEEEEe
Q psy3640         523 KLWTVG---GA----VELL--QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA-HEDDVFSCGFN  592 (616)
Q Consensus       523 ~vwd~~---~~----~~~~--~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~V~~l~~s  592 (616)
                      ..++..   ..    .+..  ....++.+....++++++|+++++...++.|.+||.++|+....... +.....+++|.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred             EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence            444431   10    0000  01123444567799999999999988899999999866765433332 24568899999


Q ss_pred             eCCCEEEEeeCCCcE
Q psy3640         593 YNGDTIITASKDNTC  607 (616)
Q Consensus       593 ~~~~~l~t~s~Dg~i  607 (616)
                      +++.++++.+..+.+
T Consensus       300 ~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          300 SDGYLYFDCNQLHHS  314 (343)
T ss_dssp             TTSCEEEEECCGGGS
T ss_pred             CCCcEEEEeCccccc
Confidence            999988887755443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.37  E-value=2.1e-10  Score=111.75  Aligned_cols=236  Identities=8%  Similarity=0.056  Sum_probs=156.8

Q ss_pred             eeEEeecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCC
Q psy3640         344 EMHTLKAHTGPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN  422 (616)
Q Consensus       344 ~~~~~~~~~~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  422 (616)
                      .+..+...........|+|+++ +++++..++.|..|+..                .  ....+..+...+..+++++++
T Consensus        36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~----------------g--~~~~~~~~~~~~~gl~~d~dG   97 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED----------------G--TVDVLLDATAFTNGNAVDAQQ   97 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT----------------S--CEEEEEESCSCEEEEEECTTS
T ss_pred             ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC----------------C--CEEEEeCCCCccceeeECCCC
Confidence            3444444555678899999998 56666678899999863                1  123444455678899999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEec
Q psy3640         423 SMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLAT----ASS-------------DQTANLWTV  481 (616)
Q Consensus       423 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~----~~~-------------dg~i~iwd~  481 (616)
                      +++++...++.|..|+.. ++........    ...+.+++++++|++.++    +..             .+.|..++.
T Consensus        98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~  176 (305)
T 3dr2_A           98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP  176 (305)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred             CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence            977766666889999986 5432222111    134678999999998876    321             245666666


Q ss_pred             CCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC------CcEEEEecCCceE-EeEEe-eccccCEEEEEEecCC
Q psy3640         482 GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD------QTAKLWTVGGAVE-LLQTF-YGHSNEVSKVSFHPTG  553 (616)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vwd~~~~~~-~~~~~-~~h~~~v~~l~~spdg  553 (616)
                      .++....  ..    .......++|+|+++.|+++...      +.|.+|++..... ....+ ....+....++++++|
T Consensus       177 ~~g~~~~--~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G  250 (305)
T 3dr2_A          177 DGSPLQR--MA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGG  250 (305)
T ss_dssp             SSCCCEE--EE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTS
T ss_pred             CCCcEEE--Ee----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCC
Confidence            4432211  11    11234578999999988887765      7899999865421 01111 1123445678999999


Q ss_pred             CEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEE
Q psy3640         554 KLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCC  608 (616)
Q Consensus       554 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~  608 (616)
                      ++.++ ..+ .|.+|+. +++.+..+..+. .+.+++|+++++.|..++.++..+
T Consensus       251 ~lwv~-~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          251 WLWSS-SGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             CEEEC-CSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CEEEe-cCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            85444 444 4999998 677777777655 488899999998888887765433

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.37  E-value=2.9e-11  Score=131.88  Aligned_cols=238  Identities=11%  Similarity=0.082  Sum_probs=156.8

Q ss_pred             cCCcceEEEEECCCCCEEEEEE-----CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCC--------
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGS-----YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDR--------  250 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs-----~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~--------  250 (616)
                      +|...+..++|||||++||-+.     .+.+|++||+++++.+... .+......++|+ |++ ++.++.+.        
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            4666899999999999998543     3357999999999876431 111113567899 988 55666553        


Q ss_pred             -----cEEEEeCCCCce--EEEe--eC-CCCcEEEEEEeCCCCCEEEEEEC----CCeEEEEeCCCcc-eeEEeeeceee
Q psy3640         251 -----TCKLWDIKSGHE--ICTY--RG-HQNVVYAVAFSEPYGDKILTGSF----DKTLKLWASAKEE-CIQTYRGHSAE  315 (616)
Q Consensus       251 -----~I~iwd~~~~~~--~~~~--~~-h~~~V~~l~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~  315 (616)
                           .|++|++.++..  ...+  .. |...+.++.|+ +++++|+....    +..+.++|+.++. ....+..+...
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                 499999987753  2333  33 45567889999 88888765443    2589999998764 33444333322


Q ss_pred             --EEEcCCCCEEEEEeC----CCcEEEEECCCCce--eEEeecCCcCEEEEEEcCCCCEEEEEECCC---cEEEEecccc
Q psy3640         316 --VTFSPDQSTFCSCSM----DHTARIFNTNSGQE--MHTLKAHTGPVISLQFSSDRNMLITGSFDS---SIVVWDIQYQ  384 (616)
Q Consensus       316 --v~~~~~~~~l~~~~~----dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg---~i~iwd~~~~  384 (616)
                        -.+++++..++..+.    .+.|..+|+.++..  ...+..|...+.  .|+++++.|+....++   .|++|++.  
T Consensus       283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--  358 (693)
T 3iuj_A          283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--  358 (693)
T ss_dssp             CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--
T ss_pred             eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--
Confidence              136777776665554    25799999987654  345656666655  8888888887766544   67888874  


Q ss_pred             cCCcccccccccccCCcceEEEe-cCccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCeE
Q psy3640         385 FGTRNAYAESTYRASHKPIHILT-GHSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMCC  444 (616)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~  444 (616)
                                     ......+. .....+..+.+++++..++....+    +.+..||+.+++.
T Consensus       359 ---------------g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          359 ---------------GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             ---------------SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ---------------CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence                           12222222 233455666677788776666554    7899999987753

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.5e-11  Score=121.67  Aligned_cols=182  Identities=13%  Similarity=0.089  Sum_probs=128.6

Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCc
Q psy3640         354 PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGT  433 (616)
Q Consensus       354 ~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  433 (616)
                      ++..+++++...++++|+.+ .+.+|++...........     ....+... ..+.. |..++|  ++++|+++ .++.
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~-----~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS-----TPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS-----CCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc-----ccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCc
Confidence            68899999999999999987 556699763321000000     01122122 23555 999999  88999998 7899


Q ss_pred             EEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE
Q psy3640         434 AKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL  513 (616)
Q Consensus       434 i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  513 (616)
                      |++||+++.........+...+.++.+.+.  .+++++.||.+.+||+.+.                             
T Consensus       108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~-----------------------------  156 (388)
T 1xip_A          108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK-----------------------------  156 (388)
T ss_dssp             EEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC-----------------------------
T ss_pred             EEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC-----------------------------
Confidence            999999887655556666666766655543  2666666666666666542                             


Q ss_pred             EEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee--eeEe------c---cC
Q psy3640         514 ATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC--IQVL------K---AH  582 (616)
Q Consensus       514 ~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~--~~~~------~---~h  582 (616)
                                       .. ..    +...|++++|||+|  ++.|..||++++|+...+++  ..++      .   +|
T Consensus       157 -----------------~~-~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~  212 (388)
T 1xip_A          157 -----------------ST-KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVE  212 (388)
T ss_dssp             -----------------CE-EE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTT
T ss_pred             -----------------cc-cc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCC
Confidence                             11 11    34589999999999  78899999999999887775  5556      2   37


Q ss_pred             cccEEEEEEeeCCCEEEEe
Q psy3640         583 EDDVFSCGFNYNGDTIITA  601 (616)
Q Consensus       583 ~~~V~~l~~s~~~~~l~t~  601 (616)
                      ...|.++.|.+++.++++-
T Consensus       213 ~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          213 EYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TSEEEEEEESSSSEEEEEE
T ss_pred             CeeEEEEEEecCCeEEEEE
Confidence            7889999999999988873

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=1.1e-09  Score=107.58  Aligned_cols=221  Identities=14%  Similarity=0.034  Sum_probs=151.1

Q ss_pred             cceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe
Q psy3640         188 LPLTNITFDKFGT-RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY  266 (616)
Q Consensus       188 ~~i~~v~~s~~g~-~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~  266 (616)
                      .-..+.+|+|++. ++++...++.|..||.++++.. .+. ....+.+++|+++++++.++.+ .|.+||..+++.....
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~  125 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHA  125 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEe
Confidence            3457889999855 5556667889999999887643 333 3568999999999998877654 4999999888764332


Q ss_pred             eC----CCCcEEEEEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEee--eceeeEEEcCCCCEEEEE-eCCCc
Q psy3640         267 RG----HQNVVYAVAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYR--GHSAEVTFSPDQSTFCSC-SMDHT  333 (616)
Q Consensus       267 ~~----h~~~V~~l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~-~~dg~  333 (616)
                      ..    ....+..++++ ++++.+++...      .+.|..++  +++......  .....++|+|+++.++.+ +.++.
T Consensus       126 ~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~  202 (326)
T 2ghs_A          126 ELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR  202 (326)
T ss_dssp             CSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred             eCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence            21    12468899998 77887665542      24555555  444332222  234567899999877655 45688


Q ss_pred             EEEEECC--CC-ce-----eEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         334 ARIFNTN--SG-QE-----MHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       334 i~i~d~~--~~-~~-----~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      |.+||+.  ++ ..     ...+.........++++++|++.++...++.|.+||..                 ...+..
T Consensus       203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-----------------g~~~~~  265 (326)
T 2ghs_A          203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-----------------GNHIAR  265 (326)
T ss_dssp             EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-----------------CCEEEE
T ss_pred             EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-----------------CCEEEE
Confidence            9999986  55 32     22232234557889999999877777677889999863                 333444


Q ss_pred             EecCccceeEEEEc-cCCCEEEEEeCC
Q psy3640         406 LTGHSQEISNCLFN-FSNSMIASSSLD  431 (616)
Q Consensus       406 ~~~~~~~i~~~~~~-~~~~~l~~~~~d  431 (616)
                      +..+...+.+++|. +++..|++++..
T Consensus       266 i~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          266 YEVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECCCCCcEEEEEecCCCCEEEEEecC
Confidence            55556678999998 887777665544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.36  E-value=1.6e-09  Score=106.39  Aligned_cols=221  Identities=10%  Similarity=0.025  Sum_probs=148.3

Q ss_pred             EEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCc
Q psy3640         355 VISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGT  433 (616)
Q Consensus       355 v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  433 (616)
                      ..+.+|+|++. ++++...++.|..||..                ... ...+. ....+.+++++++++++++. .+ .
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------~~~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-g  110 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLA----------------SGR-KTVHA-LPFMGSALAKISDSKQLIAS-DD-G  110 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETT----------------TTE-EEEEE-CSSCEEEEEEEETTEEEEEE-TT-E
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECC----------------CCc-EEEEE-CCCcceEEEEeCCCeEEEEE-CC-C
Confidence            46788999755 55566667899999975                222 12222 23568889999999877754 44 4


Q ss_pred             EEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeEEeccCCCeeeEEE
Q psy3640         434 AKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLATASS------DQTANLWTVGGAVELLQTFYGHSNEVSKVLD  503 (616)
Q Consensus       434 i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~  503 (616)
                      |.+||..+++........    ...+.+++++|+|+++++...      .+.|..++  ++ .... +..   .......
T Consensus       111 l~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~~~~-~~~---~~~~~~~  183 (326)
T 2ghs_A          111 LFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-KVTK-LFA---DISIPNS  183 (326)
T ss_dssp             EEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-EEEE-EEE---EESSEEE
T ss_pred             EEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-cEEE-eeC---CCcccCC
Confidence            999999887654332211    235889999999987665542      24455555  22 2211 111   1122457


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEecC--Cc-e----EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee
Q psy3640         504 IAFDYSGSKLATAS-SDQTAKLWTVG--GA-V----ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC  575 (616)
Q Consensus       504 ~~~s~~~~~l~~~~-~dg~i~vwd~~--~~-~----~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~  575 (616)
                      ++|+|+++.++.+. .++.|.+|++.  ++ .    .....+......+..++++++|++.++...++.|.+|+. +++.
T Consensus       184 i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~  262 (326)
T 2ghs_A          184 ICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH  262 (326)
T ss_dssp             EEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred             eEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE
Confidence            89999999776554 57899999985  33 1    222233334456788999999988777777789999998 6788


Q ss_pred             eeEeccCcccEEEEEEe-eCCCEEEEeeC
Q psy3640         576 IQVLKAHEDDVFSCGFN-YNGDTIITASK  603 (616)
Q Consensus       576 ~~~~~~h~~~V~~l~~s-~~~~~l~t~s~  603 (616)
                      +..+..+...+++++|+ ++++.|+.++.
T Consensus       263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          263 IARYEVPGKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence            88887777789999999 88876654443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=5.8e-11  Score=129.52  Aligned_cols=240  Identities=12%  Similarity=0.084  Sum_probs=157.1

Q ss_pred             CCcCEEEEEEcCCCCEEEEEE-----CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEE
Q psy3640         351 HTGPVISLQFSSDRNMLITGS-----FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI  425 (616)
Q Consensus       351 ~~~~v~~l~~~~~~~~l~~g~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  425 (616)
                      +...+..++|+|||++++.+.     ....|++||+.                ++..+.. .........++|+ |++.|
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------tg~~~~~-~~~~~k~~~~~Ws-Dg~~l  188 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------SKQPLET-PLKDVKFSGISWL-GNEGF  188 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------TCSEEEE-EEEEEESCCCEEE-TTTEE
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------CCCCCcc-ccCCceeccEEEe-CCCEE
Confidence            344677889999999888543     23579999997                3333222 1111123567899 99999


Q ss_pred             EEEeCCC-------------cEEEEeCCCCe----EEEEeec-CCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecCC
Q psy3640         426 ASSSLDG-------------TAKLWDVRTMC----CFYTLKN-HEDEVLDIAFDYSGSKLATASS----DQTANLWTVGG  483 (616)
Q Consensus       426 ~~~~~dg-------------~i~iwd~~~~~----~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~  483 (616)
                      +.++.+.             .|++|++.+..    .+..... +.....++.++|+|++|+....    ...++++++.+
T Consensus       189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTS
T ss_pred             EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCC
Confidence            9888774             39999998764    3333333 4456789999999998865543    24789999876


Q ss_pred             ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC----CCcEEEEecCCceE-EeEEeeccccCEEEEEEecCCCEEEE
Q psy3640         484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS----DQTAKLWTVGGAVE-LLQTFYGHSNEVSKVSFHPTGKLVLS  558 (616)
Q Consensus       484 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~s  558 (616)
                      .......+..+.....   .. +++++..|+..+.    .+.|..+++.+... ..+.+..|...+.  .|+++++.|+.
T Consensus       269 ~~~~~~~l~~~~~~~~---~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~  342 (693)
T 3iuj_A          269 ENAPLLTVQGDLDADV---SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFA  342 (693)
T ss_dssp             TTCCCEEEECSSSSCE---EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEE
T ss_pred             CCCceEEEeCCCCceE---EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEE
Confidence            5333334443333222   22 5667776665543    35788999876422 1234556666665  89999998877


Q ss_pred             EECCC---cEEEecCCcCeeeeEec-cCcccEEEEEEeeCCCEEEEeeCC----CcEEEcccCCC
Q psy3640         559 GSQDT---TCRLWSTESGECIQVLK-AHEDDVFSCGFNYNGDTIITASKD----NTCCIWRSMNR  615 (616)
Q Consensus       559 ~s~dg---~i~iwd~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~t~s~D----g~i~vW~~~~~  615 (616)
                      ...++   .|++|++..+. ...+. .+.+.+..+.++++++.|+....+    +++..||+.++
T Consensus       343 ~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g  406 (693)
T 3iuj_A          343 EYMVDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG  406 (693)
T ss_dssp             EEEETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred             EEEECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence            66543   68999987554 34443 344567788888888776655544    78999998654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=6.1e-11  Score=117.09  Aligned_cols=268  Identities=7%  Similarity=-0.048  Sum_probs=175.4

Q ss_pred             eEEEEeCCCcceeEEeee-ceeeEEEcCCCCEEEEEe----------CCCcEEEEECCCCceeEEeecCC-------cCE
Q psy3640         294 TLKLWASAKEECIQTYRG-HSAEVTFSPDQSTFCSCS----------MDHTARIFNTNSGQEMHTLKAHT-------GPV  355 (616)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~-------~~v  355 (616)
                      +|.+.|..+++.+.++.. ....+.++|+++.++++.          .++.|.+||+.+++.+.++....       ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence            888999999999988753 233789999999999886          36889999999999999986441       234


Q ss_pred             EEEEEcCCCCEEEEEEC--CCcEEE--EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCC-CEEEEEeC
Q psy3640         356 ISLQFSSDRNMLITGSF--DSSIVV--WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN-SMIASSSL  430 (616)
Q Consensus       356 ~~l~~~~~~~~l~~g~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~  430 (616)
                      ..++++|||++++++..  +..+.+  +|..                .   +..+... ..   ..+.|++ ..+++.+.
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~----------------t---v~~i~v~-~~---~~~~p~g~~~~~~~~~  183 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGAS----------------D---DQLTKSA-SC---FHIHPGAAATHYLGSC  183 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTE----------------E---EEEEECS-SC---CCCEEEETTEEECCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchh----------------h---ceEEECC-Cc---eEEccCCCeEEEEEcC
Confidence            68999999999998875  457888  8875                2   1222110 00   1112332 34455667


Q ss_pred             CCcEEEEeCCC-----CeEEE----EeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeeeEEeccC-----
Q psy3640         431 DGTAKLWDVRT-----MCCFY----TLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQTFYGHS-----  495 (616)
Q Consensus       431 dg~i~iwd~~~-----~~~~~----~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-----  495 (616)
                      ||.+.+.|+.+     ++...    .+.....+.   + .+++..++..+. +.+.+.|..... .....+....     
T Consensus       184 dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~  258 (368)
T 1mda_H          184 PASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKA  258 (368)
T ss_dssp             TTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred             CCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccc
Confidence            78888888876     43221    111122333   3 566666666666 899999986532 1211111100     


Q ss_pred             --CCeeeEEEEEEcCCCCEEEEEeC-C--------CcEEEEecCCceEEeEEeeccccCEEEEEEecCCC-EEEEEE-CC
Q psy3640         496 --NEVSKVLDIAFDYSGSKLATASS-D--------QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGS-QD  562 (616)
Q Consensus       496 --~~~~~i~~~~~s~~~~~l~~~~~-d--------g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s-~d  562 (616)
                        ........++++|+++.++++.. .        +.+.++|..+. +.+..+... .....++|+|||+ .+++.. .+
T Consensus       259 ~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG-QTSGPISNG-HDSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC-CEEECCEEE-EEECEEEECCSSSCEEEEEETTT
T ss_pred             cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC-eEEEEEECC-CCcceEEECCCCCEEEEEccCCC
Confidence              00011112689999998887643 2        35679999885 444444322 2588999999998 455566 58


Q ss_pred             CcEEEecCCcCeeeeEeccCcccEEEEEEe
Q psy3640         563 TTCRLWSTESGECIQVLKAHEDDVFSCGFN  592 (616)
Q Consensus       563 g~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  592 (616)
                      +.|.++|+.+++.+.++.....+ ..+++.
T Consensus       337 ~~VsVID~~t~kvv~~I~vg~~P-~~i~~~  365 (368)
T 1mda_H          337 EVLDIYDAASDQDQSSVELDKGP-ESLSVQ  365 (368)
T ss_dssp             TEEEEEESSSCEEEEECCCCSCC-CEEECC
T ss_pred             CeEEEEECCCCcEEEEEECCCCC-CEEEee
Confidence            99999999999999999866543 345543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.34  E-value=7.7e-10  Score=107.69  Aligned_cols=231  Identities=10%  Similarity=0.036  Sum_probs=156.2

Q ss_pred             EEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEe
Q psy3640         222 ICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA  299 (616)
Q Consensus       222 ~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd  299 (616)
                      +..+...........|+++++ ++ +...++.|..|+. +++ ...+..+...+..++++ ++++++++...++.|..|+
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d-~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVD-AQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEEC-TTSCEEEEETTTTEEEEEC
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeEC-CCCCEEEEECCCCEEEEEC
Confidence            334444556677899999998 43 6677899999998 454 34555567789999998 7888766665668999999


Q ss_pred             CCCcceeEEee---e----ceeeEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeEEeecCCcCE
Q psy3640         300 SAKEECIQTYR---G----HSAEVTFSPDQSTFCS----CSM-------------DHTARIFNTNSGQEMHTLKAHTGPV  355 (616)
Q Consensus       300 ~~~~~~~~~~~---~----~~~~v~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~v  355 (616)
                      .. ++......   +    ....+++.++++..++    |..             .+.|..+|..+++.....  .....
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence            86 54322211   1    1235789999998886    332             256777887666654433  34556


Q ss_pred             EEEEEcCCCCEEEEEECC------CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe
Q psy3640         356 ISLQFSSDRNMLITGSFD------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS  429 (616)
Q Consensus       356 ~~l~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  429 (616)
                      ..++|+|+++.|+++...      +.|.+|++.... .           . ...............+++.++|++.++ +
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l-----------~-~~~~~~~~~~~~pdgi~~d~~G~lwv~-~  256 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L-----------H-DRRHFASVPDGLPDGFCVDRGGWLWSS-S  256 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E-----------E-EEEEEECCSSSCCCSEEECTTSCEEEC-C
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c-----------c-CCeEEEECCCCCCCeEEECCCCCEEEe-c
Confidence            889999999988877765      689999886211 0           0 000011112334556888999985444 4


Q ss_pred             CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3640         430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT  475 (616)
Q Consensus       430 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  475 (616)
                      .+ .|.+|+. .++.+..+.... .+.+++|+++++.|+.++.++.
T Consensus       257 ~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l  299 (305)
T 3dr2_A          257 GT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL  299 (305)
T ss_dssp             SS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred             CC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence            44 4999998 566677776554 5889999999998888887643

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.32  E-value=7.5e-11  Score=116.23  Aligned_cols=299  Identities=13%  Similarity=0.075  Sum_probs=196.0

Q ss_pred             EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCC
Q psy3640         191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ  270 (616)
Q Consensus       191 ~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~  270 (616)
                      .+..++.+| .+..++.++.|..|| .+++.+.....+...+.++...+++.+..++.+  +..+|. +++.+..+....
T Consensus        23 ~~~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~   97 (330)
T 3hxj_A           23 SSPILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKK   97 (330)
T ss_dssp             CCCEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred             cCceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCC
Confidence            445565655 466677888899999 888887666655566788888888887766655  888886 666554444333


Q ss_pred             CcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q psy3640         271 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT  347 (616)
Q Consensus       271 ~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  347 (616)
                      .......+.   +..+..++.++.+..+|.. ++..........   .+...+++. +..++.++.+..+|.. ++....
T Consensus        98 ~~~~~~~~~---~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A           98 AIVSDFTIF---EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             ---CCEEEE---TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEE
T ss_pred             CcccCceEE---CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEE
Confidence            333333443   5778888889999999998 766655543322   235555665 6667788999999998 888777


Q ss_pred             eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640         348 LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS  427 (616)
Q Consensus       348 ~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  427 (616)
                      +......+.++...+++.+.+ ++  +.+..+| .                ..............+.++...+++. +..
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~----------------~g~~~~~~~~~~~~~~~~~~~~~g~-l~v  230 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-P----------------DGTEKWNFYAGYWTVTRPAISEDGT-IYV  230 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-T----------------TSCEEEEECCSSCCCSCCEECTTSC-EEE
T ss_pred             EecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-C----------------CCcEEEEEccCCcceeceEECCCCe-EEE
Confidence            776666677788877877544 44  7888888 4                3344444444445677777777765 555


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEc
Q psy3640         428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD  507 (616)
Q Consensus       428 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  507 (616)
                      ++.++.+..+|. ++..+..+......+.++...+++ .|..++.+|.+..+|.. +... .......   ..+.++..+
T Consensus       231 ~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~-g~~~-~~~~~~~---~~~~~~~~d  303 (330)
T 3hxj_A          231 TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD-GTEK-WNFETGS---WIIATPVID  303 (330)
T ss_dssp             EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT-SCEE-EEEECSS---CCCSCCEEC
T ss_pred             EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC-CcEE-EEEEcCC---ccccceEEc
Confidence            667788888884 566666665544444556666555 56677888889999963 3222 2222211   223345666


Q ss_pred             CCCCEEEEEeCCCcEEEEecCC
Q psy3640         508 YSGSKLATASSDQTAKLWTVGG  529 (616)
Q Consensus       508 ~~~~~l~~~~~dg~i~vwd~~~  529 (616)
                      +++. |..++.+|.+.+...+.
T Consensus       304 ~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          304 ENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             TTCC-EEEECTTSCEEEEEC--
T ss_pred             CCCE-EEEEcCCCeEEEEeccc
Confidence            6665 56688899988877644

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.28  E-value=2.7e-10  Score=112.52  Aligned_cols=250  Identities=12%  Similarity=-0.017  Sum_probs=167.7

Q ss_pred             cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEE----------CCCcEEEEeCCCCceEEEeeCC-------CC
Q psy3640         210 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGS----------YDRTCKLWDIKSGHEICTYRGH-------QN  271 (616)
Q Consensus       210 ~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s----------~d~~I~iwd~~~~~~~~~~~~h-------~~  271 (616)
                      +|.+.|..+++.+.++..-..+  .+.++||++.+ ++.          .++.|.+||+.+++.+.++..+       ..
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~  124 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence            7889999999999999866666  79999999944 333          3789999999999999998643       12


Q ss_pred             cEEEEEEeCCCCCEEEEEEC--CCeEEE--EeCCCcceeEEeeeceeeEEEcCCC-CEEEEEeCCCcEEEEECCC-----
Q psy3640         272 VVYAVAFSEPYGDKILTGSF--DKTLKL--WASAKEECIQTYRGHSAEVTFSPDQ-STFCSCSMDHTARIFNTNS-----  341 (616)
Q Consensus       272 ~V~~l~~~~~~~~~l~s~s~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~-~~l~~~~~dg~i~i~d~~~-----  341 (616)
                      ....++++ |++++++++..  +..+.+  +|..+   +..+.... ...+.|++ ..+++.+.||.+.+.|+.+     
T Consensus       125 ~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          125 RVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             CcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            35678999 88998888875  467888  99877   34443211 11223433 3445556788888888876     


Q ss_pred             CceeEE----eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec---------
Q psy3640         342 GQEMHT----LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG---------  408 (616)
Q Consensus       342 ~~~~~~----~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  408 (616)
                      ++....    +.....+.   . .+++..++..+. +.+.+.|......              ..+..+..         
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~--------------~v~~~~~~~~~~~~~~~  260 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA--------------TMKAAIDGNESGRKADN  260 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC--------------EEECCCCSSCTHHHHTT
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc--------------eEEEEEEeccccccccc
Confidence            332211    11122333   3 566666666666 8999999852100              00000000         


Q ss_pred             -CccceeEEEEccCCCEEEEEeC---------CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCE-EEEEe-CCCcE
Q psy3640         409 -HSQEISNCLFNFSNSMIASSSL---------DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSK-LATAS-SDQTA  476 (616)
Q Consensus       409 -~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~~~-~dg~i  476 (616)
                       .......++++++++.++++..         ++.+.++|+.+++.+..+.... ....++|+|+|++ +++.. .++.|
T Consensus       261 ~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~V  339 (368)
T 1mda_H          261 FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVL  339 (368)
T ss_dssp             EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEE
T ss_pred             cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeE
Confidence             0111222679999998887643         2356799999999988886443 6889999999984 55666 58999


Q ss_pred             EEEecCCcee
Q psy3640         477 NLWTVGGAVE  486 (616)
Q Consensus       477 ~iwd~~~~~~  486 (616)
                      .++|+.+...
T Consensus       340 sVID~~t~kv  349 (368)
T 1mda_H          340 DIYDAASDQD  349 (368)
T ss_dssp             EEEESSSCEE
T ss_pred             EEEECCCCcE
Confidence            9999988643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.20  E-value=5.1e-12  Score=126.52  Aligned_cols=256  Identities=11%  Similarity=-0.021  Sum_probs=140.7

Q ss_pred             CCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCc-EE-
Q psy3640         198 FGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNV-VY-  274 (616)
Q Consensus       198 ~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~-V~-  274 (616)
                      ++..+++++.||.|..||..+|+.+..+..  +.+.+..+..++. +++++.|+.|+.||.++|+.+..+..+... +. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            578999999999999999999999988876  5555555666775 456689999999999999987776543211 10 


Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcC
Q psy3640         275 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP  354 (616)
Q Consensus       275 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  354 (616)
                      +..+  ..+..+++++.++.+..||..+|+.+..+..+. ...++|++..+++++.++.|+.||..+|+.+..+..+.  
T Consensus        86 sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--  160 (369)
T 2hz6_A           86 SPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--  160 (369)
T ss_dssp             CSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--
T ss_pred             CceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--
Confidence            0011  135678888899999999999999887776543 34567788899999999999999999998877665321  


Q ss_pred             EEEEEEcCCC---CEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee-EEEEccCCCEE----E
Q psy3640         355 VISLQFSSDR---NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS-NCLFNFSNSMI----A  426 (616)
Q Consensus       355 v~~l~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l----~  426 (616)
                      ....++.++.   ..+++++.+|.+..||..                +++.+..... ..++. ...+++++...    +
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~----------------tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~~  223 (369)
T 2hz6_A          161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSE----------------SGDVLWIQNY-ASPVVAFYVWQREGLRKVMHIN  223 (369)
T ss_dssp             ECCBCCCCCTTCCCCEEEEETSCEEEEECTT----------------TCCEEEEEEC-SSCEEEEEECTTSSCEEECCEE
T ss_pred             ccCccccCCccccceEEEECCCCEEEEEECC----------------CCcEEEEecC-CCceEEEEEecCCceEecccee
Confidence            1223333332   567788999999999987                4444444332 22332 23334444321    1


Q ss_pred             EEeCCCcEEEEeCCCCe----EEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         427 SSSLDGTAKLWDVRTMC----CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       427 ~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      .+  ++.++.+|..+++    .+..+... ..+.+.  .-.+..++.++.+|.+..++..
T Consensus       224 ~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~sp--~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          224 VA--VETLRYLTFMSGEVGRITKWKYPFP-KETEAK--SKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             EE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHHHH--HHSEEEECBEECSSCEECCEEE
T ss_pred             ec--ccceeeeehhcCCcccceeeeeccC-cccccc--ccccceEEEecccCCEEecCcc
Confidence            11  3345556655554    33322211 111000  0123567778888888877764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.16  E-value=2.5e-11  Score=121.48  Aligned_cols=256  Identities=14%  Similarity=0.063  Sum_probs=135.9

Q ss_pred             CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee-EEE
Q psy3640         240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-VTF  318 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-v~~  318 (616)
                      ++.+++++.|+.|+.||..+|+.+..+..  +.+.+..+. .++..+++++.|+.|..||..+++.+..+..+... +..
T Consensus         9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            45577999999999999999999998886  444444444 55667788889999999999999887665443211 111


Q ss_pred             cC---CCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccc
Q psy3640         319 SP---DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       319 ~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      +|   .+..+++++.++.++.||..+|+.+..+..+.    ...++|++..+++++.|+.|+.||.+.            
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~t------------  149 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKT------------  149 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSS------------
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCC------------
Confidence            11   45677888889999999999999988876543    234566888999999999999999873            


Q ss_pred             cccCCcceEEEecCccceeEEEEccCC---CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEE-EEEcCCCCEEEE--
Q psy3640         396 YRASHKPIHILTGHSQEISNCLFNFSN---SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLD-IAFDYSGSKLAT--  469 (616)
Q Consensus       396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~~~~~~~l~~--  469 (616)
                          ++.+.......  ....++..+.   ..+++++.+|.+..||.++++.+..... ..++.. ..+++++...+.  
T Consensus       150 ----G~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~~~v~~~  222 (369)
T 2hz6_A          150 ----RELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGLRKVMHI  222 (369)
T ss_dssp             ----SSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSCEEECCE
T ss_pred             ----CCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCceEeccce
Confidence                22222221110  1112222221   5677788999999999999998888763 344433 344455532210  


Q ss_pred             EeCCCcEEEEecCCce----eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         470 ASSDQTANLWTVGGAV----ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG  528 (616)
Q Consensus       470 ~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  528 (616)
                      ...++.++.+|..++.    ............ ..+      -.+..+++++.+|.++.++..
T Consensus       223 ~~~~~~l~~ld~~tG~~~~~~~W~~~~~~~~~-sp~------~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          223 NVAVETLRYLTFMSGEVGRITKWKYPFPKETE-AKS------KLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHTSCCCCCCHHH-HHH------HSEEEECBEECSSCEECCEEE
T ss_pred             eecccceeeeehhcCCcccceeeeeccCcccc-ccc------cccceEEEecccCCEEecCcc
Confidence            0012334445543332    111100000000 000      134567778888888877764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.14  E-value=5e-08  Score=96.62  Aligned_cols=224  Identities=13%  Similarity=0.106  Sum_probs=148.6

Q ss_pred             CCCCEEEE-EeCCCcEEEEECCCC----ceeEEee-------cCCcCEEEEEEcCCCCEEEEEECC------CcEEEEec
Q psy3640         320 PDQSTFCS-CSMDHTARIFNTNSG----QEMHTLK-------AHTGPVISLQFSSDRNMLITGSFD------SSIVVWDI  381 (616)
Q Consensus       320 ~~~~~l~~-~~~dg~i~i~d~~~~----~~~~~~~-------~~~~~v~~l~~~~~~~~l~~g~~d------g~i~iwd~  381 (616)
                      ++++++++ +..++.|+++|+.+.    +....+.       .-...-..+...|+| ++++...+      |.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77777765 456788999998755    5566663       111234667888999 66665555      78999998


Q ss_pred             ccccCCcccccccccccCCcceEEEecCcc---ceeEEEEccCCCEEEEEe-------------------CCCcEEEEeC
Q psy3640         382 QYQFGTRNAYAESTYRASHKPIHILTGHSQ---EISNCLFNFSNSMIASSS-------------------LDGTAKLWDV  439 (616)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~  439 (616)
                      .                +.+.+........   .-..+.|+|+++.+++..                   .+.+|.+||+
T Consensus       172 ~----------------T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          172 Y----------------SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             T----------------TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             C----------------CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence            7                5555555542211   233578899999888885                   3678999999


Q ss_pred             CCCeEEEEeecC-C-CCEEEEEE--cCCCCEEEEEe------CCCcEEEEecCCcee-eeeEE--ecc--CC--------
Q psy3640         440 RTMCCFYTLKNH-E-DEVLDIAF--DYSGSKLATAS------SDQTANLWTVGGAVE-LLQTF--YGH--SN--------  496 (616)
Q Consensus       440 ~~~~~~~~~~~~-~-~~v~~l~~--~~~~~~l~~~~------~dg~i~iwd~~~~~~-~~~~~--~~~--~~--------  496 (616)
                      .+++.+.++... . .....+.|  +|+++++++++      .+++|.+|....+.- ..+.+  ...  ..        
T Consensus       236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~  315 (462)
T 2ece_A          236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP  315 (462)
T ss_dssp             TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred             CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence            999888888753 1 34455655  99999988777      456787766544211 11111  000  00        


Q ss_pred             ---CeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCc--eEEeEEeeccc--------------cCEEEEEEecCCCEE
Q psy3640         497 ---EVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGA--VELLQTFYGHS--------------NEVSKVSFHPTGKLV  556 (616)
Q Consensus       497 ---~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~--~~~~~~~~~h~--------------~~v~~l~~spdg~~l  556 (616)
                         .......+.+|+||++|.++.. .+.|.+||+...  .+.+.......              +....++++|||++|
T Consensus       316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L  395 (462)
T 2ece_A          316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV  395 (462)
T ss_dssp             GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred             cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence               0133567899999999988876 789999998532  23343332210              135789999999999


Q ss_pred             EEEE
Q psy3640         557 LSGS  560 (616)
Q Consensus       557 ~s~s  560 (616)
                      +++.
T Consensus       396 yVaN  399 (462)
T 2ece_A          396 YVTN  399 (462)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9887

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.12  E-value=6.9e-08  Score=104.20  Aligned_cols=297  Identities=14%  Similarity=0.108  Sum_probs=188.1

Q ss_pred             CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc----------E-EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640         240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------V-YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT  308 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~----------V-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  308 (616)
                      ++.+++++.++.|..+|..+|+.+.++......          + ..+++.   +..++.++.|+.|..+|..+|+.+-+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEE---CCEEEEEcCCCEEEEEECCCCCEeee
Confidence            566778888999999999999999988643221          0 122333   57888899999999999999998877


Q ss_pred             eeece----eeEEEcC--CCCEEEEEeC------CCcEEEEECCCCceeEEeecCC---c--------------------
Q psy3640         309 YRGHS----AEVTFSP--DQSTFCSCSM------DHTARIFNTNSGQEMHTLKAHT---G--------------------  353 (616)
Q Consensus       309 ~~~~~----~~v~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~---~--------------------  353 (616)
                      +....    ..+..+|  .+..++++..      +|.|..+|..+|+.+..+....   .                    
T Consensus       143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~  222 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccce
Confidence            65421    1111112  2345555543      5889999999999998875311   0                    


Q ss_pred             --------CEEEEEEcCCCCEEEEEECCCc-------------------EEEEecccccCCcccccccccccCCcceEEE
Q psy3640         354 --------PVISLQFSSDRNMLITGSFDSS-------------------IVVWDIQYQFGTRNAYAESTYRASHKPIHIL  406 (616)
Q Consensus       354 --------~v~~l~~~~~~~~l~~g~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (616)
                              ....++++|+...++.++.++.                   |..+|..                +++.....
T Consensus       223 w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~----------------tG~~~W~~  286 (668)
T 1kv9_A          223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----------------TGKLAWHY  286 (668)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----------------TCCEEEEE
T ss_pred             eeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC----------------CCceeeEe
Confidence                    1124688888888888887663                   7777776                44444444


Q ss_pred             ec--Cc-------cceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCC------------CCE-------
Q psy3640         407 TG--HS-------QEISNCLFNFSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHE------------DEV-------  455 (616)
Q Consensus       407 ~~--~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~v-------  455 (616)
                      ..  |.       .+.....+..+++   .++.++.+|.++++|..+|+.+.......            .++       
T Consensus       287 ~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~  366 (668)
T 1kv9_A          287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY  366 (668)
T ss_dssp             ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred             ecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccc
Confidence            32  11       1222222233564   68889999999999999999875443211            000       


Q ss_pred             -----------------EEEEEcCCCCEEEEEe------------------------------------CCCcEEEEecC
Q psy3640         456 -----------------LDIAFDYSGSKLATAS------------------------------------SDQTANLWTVG  482 (616)
Q Consensus       456 -----------------~~l~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~  482 (616)
                                       ..++++|+...+++..                                    .+|.|..||+.
T Consensus       367 ~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~  446 (668)
T 1kv9_A          367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV  446 (668)
T ss_dssp             SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred             cCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC
Confidence                             1267777766665421                                    23778999998


Q ss_pred             CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCC-EEEEEE
Q psy3640         483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGS  560 (616)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s  560 (616)
                      ++....+........     ...+...+.++++++.|+.++.||..++....+...+..-.-.-+.+..+|+ +++.++
T Consensus       447 tG~~~W~~~~~~~~~-----~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          447 KQKAAWKVPYPTHWN-----GGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             TTEEEEEEEESSSCC-----CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCcEEEEccCCCCCc-----CceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            876655443322211     1234456888999999999999999986554433222111112344456776 555544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.12  E-value=6.4e-08  Score=102.25  Aligned_cols=289  Identities=11%  Similarity=0.026  Sum_probs=177.5

Q ss_pred             CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeccCCc----------E-EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEE
Q psy3640         199 GTRCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV----------V-YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICT  265 (616)
Q Consensus       199 g~~lasgs~-dg~i~iwd~-~~~~~~~~~~~h~~~----------I-~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~  265 (616)
                      +..++.++. ++.|.-+|. .+|+.+-++......          + ..++. .++.+++++.|+.+..+|..+|+.+..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~  140 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE-ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence            566777777 899999999 999998877533210          0 11222 255677888999999999999999887


Q ss_pred             eeCCC----CcEEE-EEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEeeece---------------------
Q psy3640         266 YRGHQ----NVVYA-VAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYRGHS---------------------  313 (616)
Q Consensus       266 ~~~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~---------------------  313 (616)
                      .....    ..+.+ ....   +..++.++.      ++.|..+|..+++.+-++....                     
T Consensus       141 ~~~~~~~~~~~~~~~P~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          141 VEVCDPKVGSTLTQAPFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             ecCCCCCccceeccCCEEE---CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            75322    01111 1111   356666655      7999999999999887664321                     


Q ss_pred             --------------------eeEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEeecCC-----
Q psy3640         314 --------------------AEVTFSPDQSTFCSCSMD----------------HTARIFNTNSGQEMHTLKAHT-----  352 (616)
Q Consensus       314 --------------------~~v~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~~-----  352 (616)
                                          ..+++.++...++.++.+                +.|..+|..+|+.+..++...     
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                                124667777777776642                359999999999988876321     


Q ss_pred             -----cCEEEEEEcCCCC---EEEEEECCCcEEEEecccccCCccccccc-------ccccCCcceE-------------
Q psy3640         353 -----GPVISLQFSSDRN---MLITGSFDSSIVVWDIQYQFGTRNAYAES-------TYRASHKPIH-------------  404 (616)
Q Consensus       353 -----~~v~~l~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~-------------  404 (616)
                           .++. +....+|+   .++.++.+|.+.++|..+...........       .......++.             
T Consensus       298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~  376 (571)
T 2ad6_A          298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT  376 (571)
T ss_dssp             CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred             cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence                 2222 22224663   57778889999999986432211100000       0000001110             


Q ss_pred             -EEecCcc--ceeEEEEccCCCEEEEEe-------------------------------------CCCcEEEEeCCCCeE
Q psy3640         405 -ILTGHSQ--EISNCLFNFSNSMIASSS-------------------------------------LDGTAKLWDVRTMCC  444 (616)
Q Consensus       405 -~~~~~~~--~i~~~~~~~~~~~l~~~~-------------------------------------~dg~i~iwd~~~~~~  444 (616)
                       ...+..+  .-..++++|+..++++..                                     .+|.+..||+.+++.
T Consensus       377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~  456 (571)
T 2ad6_A          377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKA  456 (571)
T ss_dssp             EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCE
T ss_pred             EECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCE
Confidence             0000000  013456777777666653                                     347899999999998


Q ss_pred             EEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec
Q psy3640         445 FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG  493 (616)
Q Consensus       445 ~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  493 (616)
                      +.++.... .+.+..+...+..++.++.||.++.+|..++.........
T Consensus       457 ~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          457 KWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            88776432 2222222334667888999999999999888665544433

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.10  E-value=9.5e-08  Score=100.91  Aligned_cols=330  Identities=10%  Similarity=0.031  Sum_probs=193.6

Q ss_pred             CCCEEEEEC-CCcEEEEeC-CCCceEEEeeCCCCc-----------EEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee
Q psy3640         240 PYGCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV-----------VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI  306 (616)
Q Consensus       240 ~~~lls~s~-d~~I~iwd~-~~~~~~~~~~~h~~~-----------V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  306 (616)
                      ++.+++++. ++.|.-+|. .+|+.+..+......           -..+++.   +..++.++.|+.+..+|..+|+.+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~~~dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE---CCEEEEEeCCCEEEEEECCCCCEE
Confidence            566667777 899999999 999999887643210           0123333   678888899999999999999988


Q ss_pred             EEeeecee----eEEEcC--CCCEEEEEeC------CCcEEEEECCCCceeEEeecCCcC--------------------
Q psy3640         307 QTYRGHSA----EVTFSP--DQSTFCSCSM------DHTARIFNTNSGQEMHTLKAHTGP--------------------  354 (616)
Q Consensus       307 ~~~~~~~~----~v~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~--------------------  354 (616)
                      -+......    .+..+|  .+..+++++.      ++.|..+|..+|+.+.++......                    
T Consensus       139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~  218 (571)
T 2ad6_A          139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence            76543220    121122  2445666655      789999999999998877532110                    


Q ss_pred             ------------------EEEEEEcCCCCEEEEEECC----------------CcEEEEecccccCCcccccccccccCC
Q psy3640         355 ------------------VISLQFSSDRNMLITGSFD----------------SSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       355 ------------------v~~l~~~~~~~~l~~g~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                                        ...+++.++...++.++.+                +.|..+|..                ++
T Consensus       219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~----------------tG  282 (571)
T 2ad6_A          219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----------------TG  282 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----------------TC
T ss_pred             cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecC----------------CC
Confidence                              0135666766677766542                247777776                44


Q ss_pred             cceEEEecC----------ccceeEEEEccCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCC-------------CC
Q psy3640         401 KPIHILTGH----------SQEISNCLFNFSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHE-------------DE  454 (616)
Q Consensus       401 ~~~~~~~~~----------~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~  454 (616)
                      +.+......          ..++. +....+++   .++.++.+|.++++|..+++.+.......             .+
T Consensus       283 ~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p  361 (571)
T 2ad6_A          283 MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP  361 (571)
T ss_dssp             CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred             cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence            444333321          11111 12224663   57788889999999999999887765322             11


Q ss_pred             E--------------------------EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcC
Q psy3640         455 V--------------------------LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY  508 (616)
Q Consensus       455 v--------------------------~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~  508 (616)
                      +                          ..++++|+..++++...+....++.....      ......-...-..+..+|
T Consensus       362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~------~~~g~~~~g~~~~~~~~~  435 (571)
T 2ad6_A          362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP------YRAGQFFVGATLAMYPGP  435 (571)
T ss_dssp             EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------CCTTSCCCCEEEEEEECT
T ss_pred             ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc------cccCCccccccceeccCc
Confidence            1                          13466777667766665543333332210      000000000001122222


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCccc-EE
Q psy3640         509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD-VF  587 (616)
Q Consensus       509 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-V~  587 (616)
                      .+. +  ...+|.+..||..++...-+...+  .++....+...+..++.++.||.++.||.++|+.+..++..... -.
T Consensus       436 ~~~-~--~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~  510 (571)
T 2ad6_A          436 NGP-T--KKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS  510 (571)
T ss_dssp             TST-T--SCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccc-C--CCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence            211 0  023578888898876554433222  22323333445668888999999999999999999888644321 11


Q ss_pred             EEEEeeCCCEEEE
Q psy3640         588 SCGFNYNGDTIIT  600 (616)
Q Consensus       588 ~l~~s~~~~~l~t  600 (616)
                      .+.+..+|+.++.
T Consensus       511 p~~~~~~G~~yv~  523 (571)
T 2ad6_A          511 PMTYSFKGKQYIG  523 (571)
T ss_dssp             CEEEEETTEEEEE
T ss_pred             eEEEEECCEEEEE
Confidence            2345678764443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.07  E-value=1.6e-07  Score=92.99  Aligned_cols=227  Identities=11%  Similarity=0.075  Sum_probs=150.5

Q ss_pred             CCCCEE--EEECCCcEEEEeCCCC----ceEEEee------C-CCCcEEEEEEeCCCCCEEEEEECC------CeEEEEe
Q psy3640         239 EPYGCL--TGSYDRTCKLWDIKSG----HEICTYR------G-HQNVVYAVAFSEPYGDKILTGSFD------KTLKLWA  299 (616)
Q Consensus       239 ~~~~ll--s~s~d~~I~iwd~~~~----~~~~~~~------~-h~~~V~~l~~~~~~~~~l~s~s~d------g~i~iwd  299 (616)
                      .+.++|  .+..+++|.++|+.+.    +...+++      . ....-..+... |++ .++++..+      +.+.+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~-pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCG-PDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEEC-SSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeEC-CCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            667744  6678899999999766    5566663      1 11234556677 777 77776665      7899999


Q ss_pred             CCCcceeEEeeece------eeEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCceeEEeecC-C-
Q psy3640         300 SAKEECIQTYRGHS------AEVTFSPDQSTFCSCS-------------------MDHTARIFNTNSGQEMHTLKAH-T-  352 (616)
Q Consensus       300 ~~~~~~~~~~~~~~------~~v~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~-~-  352 (616)
                      ..+.+.+.++....      -.+.|+|+++.+++..                   .+.+|.+||+.+++.+.++... . 
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            99999999886331      2257899999888874                   3688999999998888887653 1 


Q ss_pred             cCEEEEEE--cCCCCEEEEEE------CCCcEEEEecccccCCcccccccccc-cCCcceEEEe-------cCccceeEE
Q psy3640         353 GPVISLQF--SSDRNMLITGS------FDSSIVVWDIQYQFGTRNAYAESTYR-ASHKPIHILT-------GHSQEISNC  416 (616)
Q Consensus       353 ~~v~~l~~--~~~~~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~i~~~  416 (616)
                      .....+.|  +|+++++.+++      .+++|.+|......    ........ ........+.       +.......+
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I  326 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI  326 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence            23445555  99999888777      45688877664210    00000000 0000000000       002346789


Q ss_pred             EEccCCCEEEEEeC-CCcEEEEeCC---CCeEEEEeecCC--------------CCEEEEEEcCCCCEEEEEe
Q psy3640         417 LFNFSNSMIASSSL-DGTAKLWDVR---TMCCFYTLKNHE--------------DEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       417 ~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~--------------~~v~~l~~~~~~~~l~~~~  471 (616)
                      .+++++++|.++.. .+.|.+||+.   +.+.+..+....              +....++++|+|++|+++.
T Consensus       327 ~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          327 DISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999999988876 5789999985   345555554321              1357899999999999886

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.07  E-value=8.5e-08  Score=103.47  Aligned_cols=289  Identities=11%  Similarity=0.099  Sum_probs=183.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEeccCCc----------E-EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640         199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV----------V-YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR  267 (616)
Q Consensus       199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~----------I-~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~  267 (616)
                      +..+++++.++.|.-+|..+|+.+-++......          + ..+++ .+++++.++.|+.|..+|..+|+.+..+.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            667888888999999999999999887643211          0 11222 24567788899999999999999998876


Q ss_pred             CCC----CcEEE-EEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEeeec---e--------------------
Q psy3640         268 GHQ----NVVYA-VAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYRGH---S--------------------  313 (616)
Q Consensus       268 ~h~----~~V~~-l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~---~--------------------  313 (616)
                      ...    ..+.+ ....   +..++++..      +|.|..+|..+|+.+-++...   .                    
T Consensus       145 ~~~~~~~~~~~~~P~v~---~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRVV---KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             CSCTTSSCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             cCCCCCcceecCCCEEE---CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            421    11111 1111   345555543      589999999999988776421   0                    


Q ss_pred             -----------eeEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEeec--CC-------cC
Q psy3640         314 -----------AEVTFSPDQSTFCSCSMDH-------------------TARIFNTNSGQEMHTLKA--HT-------GP  354 (616)
Q Consensus       314 -----------~~v~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~--~~-------~~  354 (616)
                                 ..+++.|+...++.++.++                   .|..+|..+|+.+..++.  |.       .+
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                       1257888888998888776                   399999999999988764  22       23


Q ss_pred             EEEEEEcCCCC---EEEEEECCCcEEEEecccccCCccccccc-----cc-ccCCcce------------EEEecCcc--
Q psy3640         355 VISLQFSSDRN---MLITGSFDSSIVVWDIQYQFGTRNAYAES-----TY-RASHKPI------------HILTGHSQ--  411 (616)
Q Consensus       355 v~~l~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-----~~-~~~~~~~------------~~~~~~~~--  411 (616)
                      .....+..+|+   .++.++.+|.++++|..+...........     .. .....++            ....+..+  
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~  381 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence            33333333564   68889999999999987543210000000     00 0000110            00000000  


Q ss_pred             ceeEEEEccCCCEEEEEe------------------------------------CCCcEEEEeCCCCeEEEEeecCCCCE
Q psy3640         412 EISNCLFNFSNSMIASSS------------------------------------LDGTAKLWDVRTMCCFYTLKNHEDEV  455 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~------------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~v  455 (616)
                      .-..++++|+..++++..                                    .+|.|..||+.+++.+....... +.
T Consensus       382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~  460 (668)
T 1kv9_A          382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HW  460 (668)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred             CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CC
Confidence            011256677666555421                                    23789999999999988876433 23


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEe
Q psy3640         456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY  492 (616)
Q Consensus       456 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  492 (616)
                      ....+...+.++++++.|+.++.||..++........
T Consensus       461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCceeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            3334445678899999999999999988765544433

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.06  E-value=5.7e-07  Score=85.31  Aligned_cols=246  Identities=10%  Similarity=0.011  Sum_probs=151.4

Q ss_pred             CEEEEEECCCcEEEEECCCCcE-----EEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCc
Q psy3640         200 TRCLTGSYDRTCKLWDIKSGHE-----ICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNV  272 (616)
Q Consensus       200 ~~lasgs~dg~i~iwd~~~~~~-----~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~  272 (616)
                      .+|..+.. +.|..+++.....     ...+......+..++|++++. ++ +-..++.|..++...+.....+......
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            44555543 3788888765432     112222234678999998655 44 5556789999999876554444433357


Q ss_pred             EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC---CCcEEEEECCCCceeE
Q psy3640         273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM---DHTARIFNTNSGQEMH  346 (616)
Q Consensus       273 V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~  346 (616)
                      ...+++.+..+..+++-...+.|.+++...........   .....++++|++..++.+..   .+.|..+++.... ..
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            88999993344455555567899999987543322222   23456799997776665554   3678888876432 23


Q ss_pred             Ee-ecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640         347 TL-KAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM  424 (616)
Q Consensus       347 ~~-~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  424 (616)
                      .+ .........+++++++..|..+. ..+.|.++|....                ........ ......++.. .+.+
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~----------------~~~~~~~~-~~~P~gi~~d-~~~l  221 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP----------------GRRKVLEG-LQYPFAVTSY-GKNL  221 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE----------------EEEEEEEC-CCSEEEEEEE-TTEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC----------------ceEEEecC-CCCceEEEEe-CCEE
Confidence            22 22334578999999877665555 4578999987521                11111121 1223455543 3444


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCC-CCEEEEEEcCCCC
Q psy3640         425 IASSSLDGTAKLWDVRTMCCFYTLKNHE-DEVLDIAFDYSGS  465 (616)
Q Consensus       425 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~~~~~~  465 (616)
                      +++...++.|..+|..+++.+..+.... .....+++.|++.
T Consensus       222 yva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          222 YYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            4444456899999999999888876433 2467777777653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.03  E-value=4.1e-07  Score=95.93  Aligned_cols=289  Identities=10%  Similarity=0.034  Sum_probs=177.0

Q ss_pred             CCEEEEEEC-CCcEEEEEC-CCCcEEEEEeccCCc-----------EEEEEEc-CCCC----EEEEECCCcEEEEeCCCC
Q psy3640         199 GTRCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV-----------VYAVAFS-EPYG----CLTGSYDRTCKLWDIKSG  260 (616)
Q Consensus       199 g~~lasgs~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------I~~l~fs-~~~~----lls~s~d~~I~iwd~~~~  260 (616)
                      +..|++++. ++.|.-+|. .+|+.+-++......           ...++++ .++.    ++.++.|+.+..+|..+|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            567777777 889999999 999998877643211           1234553 2455    778889999999999999


Q ss_pred             ceEEEeeCCCC----cEEE-EEEeCCCCCEEEEEE------CCCeEEEEeCCCcceeEEeeecee---------------
Q psy3640         261 HEICTYRGHQN----VVYA-VAFSEPYGDKILTGS------FDKTLKLWASAKEECIQTYRGHSA---------------  314 (616)
Q Consensus       261 ~~~~~~~~h~~----~V~~-l~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~---------------  314 (616)
                      +.+........    .+.+ -...   +..+++++      .++.|..+|..+|+.+-++.....               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~  218 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             CEEEeecCCCCCccceeecCCEEE---CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence            99887653220    1111 1112   34566655      379999999999998866643211               


Q ss_pred             --------------------------eEEEcCCCCEEEEEeCCC----------------cEEEEECCCCceeEEeecCC
Q psy3640         315 --------------------------EVTFSPDQSTFCSCSMDH----------------TARIFNTNSGQEMHTLKAHT  352 (616)
Q Consensus       315 --------------------------~v~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~~~  352 (616)
                                                ..++.++...++.++.++                .|..+|..+|+.+..++...
T Consensus       219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~  298 (599)
T 1w6s_A          219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (599)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence                                      235667788888877653                79999999999988876432


Q ss_pred             c----------CEEEEEEc-CCC---CEEEEEECCCcEEEEecccccCCccccccc-------ccccCCcce--------
Q psy3640         353 G----------PVISLQFS-SDR---NMLITGSFDSSIVVWDIQYQFGTRNAYAES-------TYRASHKPI--------  403 (616)
Q Consensus       353 ~----------~v~~l~~~-~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~--------  403 (616)
                      .          ++. +... .+|   ..++.++.+|.+.++|..+...........       .......++        
T Consensus       299 ~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~  377 (599)
T 1w6s_A          299 HDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTR  377 (599)
T ss_dssp             TCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCC
T ss_pred             CccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCC
Confidence            1          222 2222 467   467778899999999986432211100000       000000110        


Q ss_pred             ------EEEecCc--cceeEEEEccCCCEEEEEe---------------------------------------CCCcEEE
Q psy3640         404 ------HILTGHS--QEISNCLFNFSNSMIASSS---------------------------------------LDGTAKL  436 (616)
Q Consensus       404 ------~~~~~~~--~~i~~~~~~~~~~~l~~~~---------------------------------------~dg~i~i  436 (616)
                            ....+..  ..-..++++|+..++++..                                       ..|.+..
T Consensus       378 ~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A  457 (599)
T 1w6s_A          378 MDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKA  457 (599)
T ss_dssp             TTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEE
T ss_pred             CCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEE
Confidence                  0000000  0012344555544443321                                       3478999


Q ss_pred             EeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEe
Q psy3640         437 WDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY  492 (616)
Q Consensus       437 wd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  492 (616)
                      ||+.+++.+...... .+...-.+...+.+++.++.|+.++.||..++..+.+...
T Consensus       458 ~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          458 YNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             ECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            999999988877532 1221111223467888899999999999999876655533

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.03  E-value=7.2e-07  Score=84.61  Aligned_cols=248  Identities=10%  Similarity=0.022  Sum_probs=151.0

Q ss_pred             EEEEEeCCCcEEEEECCCCce-----eEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccc
Q psy3640         324 TFCSCSMDHTARIFNTNSGQE-----MHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYR  397 (616)
Q Consensus       324 ~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~  397 (616)
                      +|+.+.. +.|+.+++.....     ...+......+..++++++++.|+.+. ..+.|..++...              
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g--------------   67 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG--------------   67 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS--------------
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC--------------
Confidence            3444442 4677777765432     111222234568999999766665554 467899998752              


Q ss_pred             cCCcceEEEecCccceeEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC---C
Q psy3640         398 ASHKPIHILTGHSQEISNCLFNFSNSMIASS-SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS---D  473 (616)
Q Consensus       398 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~---d  473 (616)
                        ................+++++++..++.+ ...+.|.+++...................++++|++..|+.+..   .
T Consensus        68 --~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~  145 (267)
T 1npe_A           68 --GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDN  145 (267)
T ss_dssp             --CCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSS
T ss_pred             --CCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCC
Confidence              22222222223466789999876555544 45678999998654322222222256789999997666665554   3


Q ss_pred             CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640         474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT  552 (616)
Q Consensus       474 g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  552 (616)
                      +.|..+++.....  ..+..  ........+++++++..|+.+. ..+.|.+++.... ........ ......++..  
T Consensus       146 ~~I~~~~~dg~~~--~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~~-~~~P~gi~~d--  217 (267)
T 1npe_A          146 PKIETSHMDGTNR--RILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLEG-LQYPFAVTSY--  217 (267)
T ss_dssp             CEEEEEETTSCCC--EEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEEC-CCSEEEEEEE--
T ss_pred             cEEEEEecCCCCc--EEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEecC-CCCceEEEEe--
Confidence            6788888765322  11211  1223456789999877766555 4678999999763 22222222 2334566654  


Q ss_pred             CCEEEEEE-CCCcEEEecCCcCeeeeEeccCc-ccEEEEEEeeCCC
Q psy3640         553 GKLVLSGS-QDTTCRLWSTESGECIQVLKAHE-DDVFSCGFNYNGD  596 (616)
Q Consensus       553 g~~l~s~s-~dg~i~iwd~~~~~~~~~~~~h~-~~V~~l~~s~~~~  596 (616)
                      +..|..+. .++.|..+|..+++.+..+.... .....+++.|++.
T Consensus       218 ~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          218 GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            44555554 56899999999999998886543 2366788888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.01  E-value=2.9e-08  Score=101.94  Aligned_cols=219  Identities=12%  Similarity=0.030  Sum_probs=147.2

Q ss_pred             CCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecC-ccceeEEEE-c-cCCCEEEEEe---------
Q psy3640         363 DRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-SQEISNCLF-N-FSNSMIASSS---------  429 (616)
Q Consensus       363 ~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~-~-~~~~~l~~~~---------  429 (616)
                      ||+++.+... ++.|.+.|+.                ..+....+.-. ......+++ + |+++++++++         
T Consensus       100 DG~~lfVnd~~~~rVavIdl~----------------t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~d  163 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCD----------------VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVND  163 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETT----------------TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             CCCEEEEEcCCCCEEEEEECC----------------CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCC
Confidence            7777777665 4579999997                55555533322 234667776 5 8999998885         


Q ss_pred             ---------CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC--------------------------
Q psy3640         430 ---------LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ--------------------------  474 (616)
Q Consensus       430 ---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------------------------  474 (616)
                               .++.+.+.|..+.+...++.-.. ....++++|+|+++++.+.+.                          
T Consensus       164 g~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          164 GTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             SSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             CcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence                     24579999999999888887433 456788999999999988653                          


Q ss_pred             ------------cEEEEecCC--ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCce--------
Q psy3640         475 ------------TANLWTVGG--AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAV--------  531 (616)
Q Consensus       475 ------------~i~iwd~~~--~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~--------  531 (616)
                                  .+.+.|..+  .......+...    ....++.++|||+++++++ .+..|.++|+.+..        
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~  318 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENAD  318 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCC
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEecC----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccC
Confidence                        233444433  11101111111    1123589999999877766 58899999998532        


Q ss_pred             ---EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc----------CeeeeEeccCcccEE-----EEEEee
Q psy3640         532 ---ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES----------GECIQVLKAHEDDVF-----SCGFNY  593 (616)
Q Consensus       532 ---~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~h~~~V~-----~l~~s~  593 (616)
                         ...... .-......++|+|+|...++...|++|.+||+++          .+.+.++..|-.+-.     .+.++|
T Consensus       319 ~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~  397 (595)
T 1fwx_A          319 PRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA  397 (595)
T ss_dssp             GGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             cccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC
Confidence               122222 2335678999999994445566899999999987          567778877755421     124579


Q ss_pred             CCCEEEEeeC
Q psy3640         594 NGDTIITASK  603 (616)
Q Consensus       594 ~~~~l~t~s~  603 (616)
                      ||++|+++..
T Consensus       398 DGk~l~~~Nk  407 (595)
T 1fwx_A          398 TNDWLVCLSK  407 (595)
T ss_dssp             CSSEEEEEES
T ss_pred             CCCEEEEcCC
Confidence            9999998754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.98  E-value=9.1e-07  Score=93.32  Aligned_cols=299  Identities=10%  Similarity=0.025  Sum_probs=183.4

Q ss_pred             CCCEEEEEC-CCcEEEEeC-CCCceEEEeeCCCCc-----------EEEEEEeCCCCCE----EEEEECCCeEEEEeCCC
Q psy3640         240 PYGCLTGSY-DRTCKLWDI-KSGHEICTYRGHQNV-----------VYAVAFSEPYGDK----ILTGSFDKTLKLWASAK  302 (616)
Q Consensus       240 ~~~lls~s~-d~~I~iwd~-~~~~~~~~~~~h~~~-----------V~~l~~~~~~~~~----l~s~s~dg~i~iwd~~~  302 (616)
                      ++.+++++. ++.|.-+|. .+|+.+.++......           ...++++ |.+..    ++.++.|+.+..+|..+
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~-p~~g~~~~rV~v~t~dg~l~AlDa~T  140 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYW-PGDGKTPALILKTQLDGNVAALNAET  140 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEE-CCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEE-ecCCcceeEEEEEcCCCEEEEEECCC
Confidence            556667777 899999999 999999888643221           1234553 23444    88888999999999999


Q ss_pred             cceeEEeeecee----eEEEcC--CCCEEEEEe------CCCcEEEEECCCCceeEEeecCCcCE---------------
Q psy3640         303 EECIQTYRGHSA----EVTFSP--DQSTFCSCS------MDHTARIFNTNSGQEMHTLKAHTGPV---------------  355 (616)
Q Consensus       303 ~~~~~~~~~~~~----~v~~~~--~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~v---------------  355 (616)
                      |+.+-.......    .+.-.|  .+..+++++      .+|.|+.+|.++|+.+..+.......               
T Consensus       141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  220 (599)
T 1w6s_A          141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY  220 (599)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence            998866543220    111111  134555555      37999999999999988776322110               


Q ss_pred             -----------------------EEEEEcCCCCEEEEEECCC----------------cEEEEecccccCCccccccccc
Q psy3640         356 -----------------------ISLQFSSDRNMLITGSFDS----------------SIVVWDIQYQFGTRNAYAESTY  396 (616)
Q Consensus       356 -----------------------~~l~~~~~~~~l~~g~~dg----------------~i~iwd~~~~~~~~~~~~~~~~  396 (616)
                                             ..+++.++..+++.++.++                .|..+|.+              
T Consensus       221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~--------------  286 (599)
T 1w6s_A          221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD--------------  286 (599)
T ss_dssp             CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT--------------
T ss_pred             cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC--------------
Confidence                                   1346667777888877653                67777776              


Q ss_pred             ccCCcceEEEecCcc----------ceeEEEEc-cCC---CEEEEEeCCCcEEEEeCCCCeEEEEeecCC----------
Q psy3640         397 RASHKPIHILTGHSQ----------EISNCLFN-FSN---SMIASSSLDGTAKLWDVRTMCCFYTLKNHE----------  452 (616)
Q Consensus       397 ~~~~~~~~~~~~~~~----------~i~~~~~~-~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------  452 (616)
                        +++....+.....          ++. +... .++   ..++.++.+|.++++|.++++.+.......          
T Consensus       287 --TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~  363 (599)
T 1w6s_A          287 --TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL  363 (599)
T ss_dssp             --TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred             --CCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence              4444433332211          111 1111 456   467778899999999999999887665221          


Q ss_pred             ---CCE--------------------------EEEEEcCCCCEEEEEe--------------------------------
Q psy3640         453 ---DEV--------------------------LDIAFDYSGSKLATAS--------------------------------  471 (616)
Q Consensus       453 ---~~v--------------------------~~l~~~~~~~~l~~~~--------------------------------  471 (616)
                         .++                          ..++++|+..++++..                                
T Consensus       364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~  443 (599)
T 1w6s_A          364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK  443 (599)
T ss_dssp             TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred             CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence               111                          2456777766655432                                


Q ss_pred             -------CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCE
Q psy3640         472 -------SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEV  544 (616)
Q Consensus       472 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v  544 (616)
                             ..|.+..||+.++....+..........     .+...+..++.++.|+.++.||.+++..+-+...+.....
T Consensus       444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~  518 (599)
T 1w6s_A          444 GDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-----TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG  518 (599)
T ss_dssp             SBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-----ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence                   2367777888776554443322211111     1223577888899999999999999766554433322222


Q ss_pred             EEEEEecCCC-EEEEEEC
Q psy3640         545 SKVSFHPTGK-LVLSGSQ  561 (616)
Q Consensus       545 ~~l~~spdg~-~l~s~s~  561 (616)
                      .-+.+..+|+ ++++.+.
T Consensus       519 ~P~~y~~~G~qyv~~~~G  536 (599)
T 1w6s_A          519 YPMTYTHKGTQYVAIYYG  536 (599)
T ss_dssp             CCEEEEETTEEEEEEEEC
T ss_pred             ccEEEEeCCEEEEEEEcc
Confidence            3355667876 4444433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.96  E-value=7.6e-05  Score=79.30  Aligned_cols=366  Identities=7%  Similarity=0.028  Sum_probs=205.5

Q ss_pred             CcceEEEEECCCCCEEEEE-ECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEC--CCcEEEEeCCCCce
Q psy3640         187 LLPLTNITFDKFGTRCLTG-SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSY--DRTCKLWDIKSGHE  262 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasg-s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~--d~~I~iwd~~~~~~  262 (616)
                      ......+++++.+..|..+ ...+.|.+.+++.......+...-.....|++.|.+. +..+..  .+.|...+++....
T Consensus        83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~  162 (619)
T 3s94_A           83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  162 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce
Confidence            3568899999966655544 5578899999876544333334445677899988754 444442  45677777664433


Q ss_pred             EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3640         263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSMDHTARIFNT  339 (616)
Q Consensus       263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~dg~i~i~d~  339 (616)
                      .......-.....+++.+.++...++-...+.|...++..........   .+...+++..+ ..+++-...+.|...|.
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence            333333455788999994444445554556788888887543332222   33445666655 44444445678999998


Q ss_pred             CCCceeEEeecCCcCEEEEEEc--------------------------C-----------------CC--------CEEE
Q psy3640         340 NSGQEMHTLKAHTGPVISLQFS--------------------------S-----------------DR--------NMLI  368 (616)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~l~~~--------------------------~-----------------~~--------~~l~  368 (616)
                      .+++....+.........+++.                          |                 ++        .+|+
T Consensus       242 ~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll  321 (619)
T 3s94_A          242 YTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL  321 (619)
T ss_dssp             SSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEE
T ss_pred             CCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEE
Confidence            7776544432211111111110                          1                 10        0111


Q ss_pred             EEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEE
Q psy3640         369 TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYT  447 (616)
Q Consensus       369 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~  447 (616)
                      .+. .+.|+..++...              ...........-..+.+++|.+.+..|+.+. ..+.|+.+++........
T Consensus       322 ~~~-~~~i~~i~l~~~--------------~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v  386 (619)
T 3s94_A          322 LAR-RTDLRRISLDTP--------------DFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV  386 (619)
T ss_dssp             EEE-SSCEEEEESSST--------------TCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             EEc-ccceEEEecCCC--------------ccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEE
Confidence            111 223333333210              0001100001123456788888655555444 567888888875433333


Q ss_pred             eecCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC--CCcEEE
Q psy3640         448 LKNHEDEVLDIAFDYSGS-KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS--DQTAKL  524 (616)
Q Consensus       448 ~~~~~~~v~~l~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~v  524 (616)
                      +...-.....+++++.+. +.++-+..+.|.+.++.+...  ..+..  .......+++++|....|+....  ...|..
T Consensus       387 ~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r  462 (619)
T 3s94_A          387 VTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIER  462 (619)
T ss_dssp             ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             EECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEE
Confidence            333335677899997555 445555678899998876432  22221  12344678999998666666554  356777


Q ss_pred             EecCCceEEeEEeeccccCEEEEEEecCCCEEEEEEC-CCcEEEecCCcC
Q psy3640         525 WTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ-DTTCRLWSTESG  573 (616)
Q Consensus       525 wd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~~  573 (616)
                      .+++..... ......-...+.+++++++..|..+.. .+.|...++...
T Consensus       463 ~~~dG~~~~-~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          463 AALDGSDRV-VLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             EETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             EccCCCccE-EEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence            777653222 222333456889999998777776654 467888887543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.94  E-value=1.7e-06  Score=91.43  Aligned_cols=297  Identities=13%  Similarity=0.071  Sum_probs=181.7

Q ss_pred             CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCc---------EEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee
Q psy3640         240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV---------VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR  310 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~---------V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  310 (616)
                      ++.+++++.++.|.-+|..+|+.+.++......         -..+++.   +..++.++.|+.|.-+|..+|+.+-...
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~---~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEE---CCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            566667776555999999999999888644321         0122333   5788889999999999999999886654


Q ss_pred             ece---------eeEEEcC--CCC-EEEEEeC------CCcEEEEECCCCceeEEeecCCcCE-----------------
Q psy3640         311 GHS---------AEVTFSP--DQS-TFCSCSM------DHTARIFNTNSGQEMHTLKAHTGPV-----------------  355 (616)
Q Consensus       311 ~~~---------~~v~~~~--~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~v-----------------  355 (616)
                      ...         ..+....  +++ .+++++.      +|.|..+|..+|+.+.........+                 
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            322         1111111  233 5666553      7899999999999888664321100                 


Q ss_pred             ------------------------EEEEEcCCCCEEEEEECC------------------------CcEEEEecccccCC
Q psy3640         356 ------------------------ISLQFSSDRNMLITGSFD------------------------SSIVVWDIQYQFGT  387 (616)
Q Consensus       356 ------------------------~~l~~~~~~~~l~~g~~d------------------------g~i~iwd~~~~~~~  387 (616)
                                              ..++++|+..+++.+..+                        +.|..+|..     
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~-----  299 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPS-----  299 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTT-----
T ss_pred             cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCC-----
Confidence                                    134666777778777642                        467777776     


Q ss_pred             cccccccccccCCcceEEEec--Ccc----ce-eEEEEc---cCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCCC-
Q psy3640         388 RNAYAESTYRASHKPIHILTG--HSQ----EI-SNCLFN---FSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHED-  453 (616)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~--~~~----~i-~~~~~~---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-  453 (616)
                                 +++..-....  |..    .+ .-+...   .+++   .++.++.+|.++++|.++++.+........ 
T Consensus       300 -----------TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~  368 (582)
T 1flg_A          300 -----------SGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNI  368 (582)
T ss_dssp             -----------TCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCC
T ss_pred             -----------CCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCc
Confidence                       4444444332  210    01 111222   3563   788899999999999999998876653320 


Q ss_pred             ------------CE--------------------------------EEEEEcCCCCEEEEEe------------------
Q psy3640         454 ------------EV--------------------------------LDIAFDYSGSKLATAS------------------  471 (616)
Q Consensus       454 ------------~v--------------------------------~~l~~~~~~~~l~~~~------------------  471 (616)
                                  ++                                ..++++|+..++++..                  
T Consensus       369 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~  448 (582)
T 1flg_A          369 TWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS  448 (582)
T ss_dssp             CSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred             cccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence                        00                                1346666655555432                  


Q ss_pred             ---------------CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEE
Q psy3640         472 ---------------SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQT  536 (616)
Q Consensus       472 ---------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  536 (616)
                                     .+|.+..||+.++....+..........     .....+.+++.++.|+.++.||.+++..+.+.
T Consensus       449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-----~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG-----VLATAGNLVFTGTGDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCccc-----ceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence                           2577888998887655444332221111     11224778888999999999999997555443


Q ss_pred             eeccccCEEEEEEecCCC-EEEEEE
Q psy3640         537 FYGHSNEVSKVSFHPTGK-LVLSGS  560 (616)
Q Consensus       537 ~~~h~~~v~~l~~spdg~-~l~s~s  560 (616)
                      ..+......-+.+..+|+ ++++.+
T Consensus       524 ~~~~g~~a~P~~y~~~G~qYv~~~~  548 (582)
T 1flg_A          524 QTGSGIVSPPITWEQDGEQYLGVTV  548 (582)
T ss_dssp             ECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             cCCCCcccCceEEEECCEEEEEEEc
Confidence            332222223366677887 444443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.94  E-value=9.1e-08  Score=98.25  Aligned_cols=265  Identities=10%  Similarity=0.023  Sum_probs=179.1

Q ss_pred             EEEEECCCcEEEEECCCCcEEEEEec---------------------------------cC------CcEEEEEEcC---
Q psy3640         202 CLTGSYDRTCKLWDIKSGHEICTYRG---------------------------------HQ------NVVYAVAFSE---  239 (616)
Q Consensus       202 lasgs~dg~i~iwd~~~~~~~~~~~~---------------------------------h~------~~I~~l~fs~---  239 (616)
                      +.+|+..|.++|+-+.++++++.+.-                                 +.      +..-....|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            56788999999999999988877631                                 01      1112233443   


Q ss_pred             --CCCEE--EEECCCcEEEEeCCCCceEEEeeC-CCCcEEEEEEeC-CCCCEEEEEE------------------CCCeE
Q psy3640         240 --PYGCL--TGSYDRTCKLWDIKSGHEICTYRG-HQNVVYAVAFSE-PYGDKILTGS------------------FDKTL  295 (616)
Q Consensus       240 --~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~~-~~~~~l~s~s------------------~dg~i  295 (616)
                        ||+++  ....++.|.+.|+.+.+....+.- .......+++.. |++.++++++                  .++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence              67744  555677899999999998875542 235688899865 7888888885                  24579


Q ss_pred             EEEeCCCcceeEEee--eceeeEEEcCCCCEEEEEeCCC--------------------------------------cEE
Q psy3640         296 KLWASAKEECIQTYR--GHSAEVTFSPDQSTFCSCSMDH--------------------------------------TAR  335 (616)
Q Consensus       296 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~~~dg--------------------------------------~i~  335 (616)
                      .+.|.++.+...++.  +....++++|+++++++.+.+.                                      .|.
T Consensus       178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            999999998887765  4445678999999999888553                                      467


Q ss_pred             EEECCC--Cce-eEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640         336 IFNTNS--GQE-MHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ  411 (616)
Q Consensus       336 i~d~~~--~~~-~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (616)
                      +.|..+  ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.......    ..... ....+.....-..
T Consensus       258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~----~~~l~-~~~~v~~~v~vG~  331 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVF----YENAD-PRSAVVAEPELGL  331 (595)
T ss_dssp             EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHH----HSCCC-GGGGEEECCBCCS
T ss_pred             EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccc----ccccC-cccceEEEcCCCC
Confidence            777776  444 444543 23457899999999877665 57899999997431000    00000 1111222222334


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEeCCC----------CeEEEEeecCCCCEE-----EEEEcCCCCEEEEEeC
Q psy3640         412 EISNCLFNFSNSMIASSSLDGTAKLWDVRT----------MCCFYTLKNHEDEVL-----DIAFDYSGSKLATASS  472 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~-----~l~~~~~~~~l~~~~~  472 (616)
                      ....++|+++|...++.-.|+.|.+||+.+          .+.+..+..|-.+-.     .+.++|||++|+++..
T Consensus       332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            567889999995555666789999999977          566777776654321     1245799999998854

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.93  E-value=1.1e-06  Score=92.82  Aligned_cols=310  Identities=12%  Similarity=0.077  Sum_probs=181.1

Q ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEeccCCcE---------EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCC
Q psy3640         199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV---------YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGH  269 (616)
Q Consensus       199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I---------~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h  269 (616)
                      +..+++++.++.|.-+|.++|+.+-++.......         ..++. .++.++.++.|+.|..+|..+|+.+......
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            4566666664459999999999988876443210         11222 2566778899999999999999998887643


Q ss_pred             CC----cEE-E-EEEe-CCCCC-EEEEEE------CCCeEEEEeCCCcceeEEeeece----------------------
Q psy3640         270 QN----VVY-A-VAFS-EPYGD-KILTGS------FDKTLKLWASAKEECIQTYRGHS----------------------  313 (616)
Q Consensus       270 ~~----~V~-~-l~~~-~~~~~-~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~----------------------  313 (616)
                      ..    .+. + +... ..+++ .+++++      .++.|.-+|..+|+.+-......                      
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            21    111 1 1111 01223 566655      37899999999998776543210                      


Q ss_pred             ----------------------eeEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeEE
Q psy3640         314 ----------------------AEVTFSPDQSTFCSCSM--------------------D----HTARIFNTNSGQEMHT  347 (616)
Q Consensus       314 ----------------------~~v~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~~~~~~  347 (616)
                                            ...++.|+...++.+..                    |    +.|..+|..+|+.+..
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                                  11356677788877763                    2    5799999999999988


Q ss_pred             eec--CC--------cCEEEEEEc-CCCC---EEEEEECCCcEEEEecccccCCccccccc-------ccccCCcc----
Q psy3640         348 LKA--HT--------GPVISLQFS-SDRN---MLITGSFDSSIVVWDIQYQFGTRNAYAES-------TYRASHKP----  402 (616)
Q Consensus       348 ~~~--~~--------~~v~~l~~~-~~~~---~l~~g~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~----  402 (616)
                      ++.  |.        .++. +... .+|+   .++.++.+|.++++|..+...........       .......+    
T Consensus       307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~  385 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE  385 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred             EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence            753  21        1222 2222 4664   78889999999999986432211100000       00000000    


Q ss_pred             ----------------eEEEecCcc--ceeEEEEccCCCEEEEEe---------------------------------CC
Q psy3640         403 ----------------IHILTGHSQ--EISNCLFNFSNSMIASSS---------------------------------LD  431 (616)
Q Consensus       403 ----------------~~~~~~~~~--~i~~~~~~~~~~~l~~~~---------------------------------~d  431 (616)
                                      ........+  .-..++++|+..++++..                                 .+
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~  465 (582)
T 1flg_A          386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV  465 (582)
T ss_dssp             TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred             ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence                            001111000  012345566554444432                                 25


Q ss_pred             CcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC
Q psy3640         432 GTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS  511 (616)
Q Consensus       432 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  511 (616)
                      |.+..||+.+++.+....... ++..-.....+.+++.++.||.++.||..++..+.+..........+   +.+..+|+
T Consensus       466 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P---~~y~~~G~  541 (582)
T 1flg_A          466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             ceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCc---eEEEECCE
Confidence            789999999999887776432 22221122246688889999999999999886665544332222122   34455666


Q ss_pred             EEE
Q psy3640         512 KLA  514 (616)
Q Consensus       512 ~l~  514 (616)
                      .++
T Consensus       542 qYv  544 (582)
T 1flg_A          542 QYL  544 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.91  E-value=3.5e-07  Score=85.17  Aligned_cols=190  Identities=6%  Similarity=0.038  Sum_probs=134.6

Q ss_pred             eEEEEECCCCCEEEEEEC--CCcEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe
Q psy3640         190 LTNITFDKFGTRCLTGSY--DRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY  266 (616)
Q Consensus       190 i~~v~~s~~g~~lasgs~--dg~i~iwd~~~~~~~~~~~~h~-~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~  266 (616)
                      ...++|+|+|.+.++.+.  ++.|.+.|..+++.+..+.-.. .....+++..+.-+++.-.++.+.++|..+.+.+.++
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            689999999755555443  5799999999999998876322 2233556653322446667899999999999999888


Q ss_pred             eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec--------eeeEEEcCCCCEEEEEeCCCcEEEEE
Q psy3640         267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH--------SAEVTFSPDQSTFCSCSMDHTARIFN  338 (616)
Q Consensus       267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------~~~v~~~~~~~~l~~~~~dg~i~i~d  338 (616)
                      ......-..  ++ ++++.++++..++.|.++|..+.+.+..+.-.        ...+.+. ++...+....++.|.+.|
T Consensus       103 ~~g~~~g~g--lt-~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID  178 (266)
T 2iwa_A          103 THQMKDGWG--LA-TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARIS  178 (266)
T ss_dssp             ECCSSSCCE--EE-ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred             ECCCCCeEE--EE-ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEE
Confidence            633111133  44 45666666667899999999999888776532        2345666 665555555678999999


Q ss_pred             CCCCceeEEeecCC-------------cCEEEEEEcCCCCEEE-EEECCCcEEEEeccc
Q psy3640         339 TNSGQEMHTLKAHT-------------GPVISLQFSSDRNMLI-TGSFDSSIVVWDIQY  383 (616)
Q Consensus       339 ~~~~~~~~~~~~~~-------------~~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~  383 (616)
                      ..+++.+..+....             .....++|+|+++.++ ++...+.+...++..
T Consensus       179 ~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          179 AKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             TTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            99999988886321             3568999999987555 555678888888863

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.85  E-value=0.00011  Score=78.16  Aligned_cols=373  Identities=7%  Similarity=-0.048  Sum_probs=199.1

Q ss_pred             CCcEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCce-EEEeeCCCCcEEEEEEeCCCC
Q psy3640         208 DRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYG  283 (616)
Q Consensus       208 dg~i~iwd~~~~~-~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~-~~~~~~h~~~V~~l~~~~~~~  283 (616)
                      ...|+..|+.... ....+...-.....++|++.+. +. +-...+.|..+++..... ...+.........+++.+..+
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            3467888877543 2223333455678999998665 33 444578899999876542 233443346788999984455


Q ss_pred             CEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecCCcCEEEE
Q psy3640         284 DKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTLKAHTGPVISL  358 (616)
Q Consensus       284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l  358 (616)
                      ++.++-...+.|.+.++..........   .....+++.|.+..|+....  .+.|...++............-.....+
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence            556666667899999987654333221   23456899998776666553  3667777776433333333334567899


Q ss_pred             EEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy3640         359 QFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW  437 (616)
Q Consensus       359 ~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  437 (616)
                      ++++++..|..+. ..+.|...|+...                .......+.......+++..+ .+.++-...+.|...
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~----------------~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~  239 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGT----------------NRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILAC  239 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCC----------------EEC---------CCCEEESSS-EEEEECTTTCSEEEE
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCC----------------ccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEE
Confidence            9999766666554 4567888877521                111111111122235555544 344444455678888


Q ss_pred             eCCCCeEEEEeecCCCCEEE-------------------------EEE-----------cCCC---------------CE
Q psy3640         438 DVRTMCCFYTLKNHEDEVLD-------------------------IAF-----------DYSG---------------SK  466 (616)
Q Consensus       438 d~~~~~~~~~~~~~~~~v~~-------------------------l~~-----------~~~~---------------~~  466 (616)
                      |..+++....+........+                         +++           .|.|               .+
T Consensus       240 d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~  319 (619)
T 3s94_A          240 NKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATEL  319 (619)
T ss_dssp             ESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEE
T ss_pred             ECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceE
Confidence            87666443332211100111                         111           1111               11


Q ss_pred             EEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEeeccccCEE
Q psy3640         467 LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFYGHSNEVS  545 (616)
Q Consensus       467 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~h~~~v~  545 (616)
                      |+.+ ..+.|+..++.........  ..........++++++.+..|+.+. ..+.|..+++...... ......-....
T Consensus       320 Ll~~-~~~~i~~i~l~~~~~~~~~--~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~-~v~~~~~~~p~  395 (619)
T 3s94_A          320 LLLA-RRTDLRRISLDTPDFTDIV--LQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQ-FVVTAQIAHPD  395 (619)
T ss_dssp             EEEE-ESSCEEEEESSSTTCCCEE--CCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCC
T ss_pred             EEEE-cccceEEEecCCCccceeE--EeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccE-EEEECCCCCcC
Confidence            2222 2334555555432111100  0111223466789998766666555 5788888888763221 22222334677


Q ss_pred             EEEEecCCCEE-EEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640         546 KVSFHPTGKLV-LSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA  601 (616)
Q Consensus       546 ~l~~spdg~~l-~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~  601 (616)
                      .+++.+.+..| .+-+..+.|.+.++........+...-....++++.|....|..+
T Consensus       396 GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~t  452 (619)
T 3s94_A          396 GIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWT  452 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEE
T ss_pred             ceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEe
Confidence            89998755544 444566889999886443222223334567889999874444443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.85  E-value=5.1e-06  Score=80.41  Aligned_cols=239  Identities=10%  Similarity=-0.031  Sum_probs=143.5

Q ss_pred             ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCC
Q psy3640         343 QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN  422 (616)
Q Consensus       343 ~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  422 (616)
                      +.+..+.. ......++|+++++++++-..++.|..||...                 ..... .........+++.+++
T Consensus        23 ~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-----------------~~~~~-~~~~~~p~gia~~~dG   83 (306)
T 2p4o_A           23 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-----------------NQQIH-ATVEGKVSGLAFTSNG   83 (306)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-----------------CEEEE-EECSSEEEEEEECTTS
T ss_pred             eEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCC-----------------ceEEE-EeCCCCceeEEEcCCC
Confidence            34444432 24568899999998777766788999888641                 11111 1223457789999999


Q ss_pred             CEEEEEeCCC--cEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec------
Q psy3640         423 SMIASSSLDG--TAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG------  493 (616)
Q Consensus       423 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------  493 (616)
                      +++++.....  .|..+|..+++....... .......++..+++..+++-..++.|..+|.............      
T Consensus        84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A           84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence            9766654432  477778777765433221 2233455666665544555446888888887653211110000      


Q ss_pred             cCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCC-ce-EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640         494 HSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGG-AV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       494 ~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~-~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~  570 (616)
                      ..........+  +++++.|+++. ..+.|..+++.. +. .....+.. ......++++++|++.++....+.|.+++.
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            01111223334  78887766555 578899999864 11 01111111 134567899999988777777889999997


Q ss_pred             CcCeee--eEeccCcccEEEEEEe---eCCCEEEEeeCC
Q psy3640         571 ESGECI--QVLKAHEDDVFSCGFN---YNGDTIITASKD  604 (616)
Q Consensus       571 ~~~~~~--~~~~~h~~~V~~l~~s---~~~~~l~t~s~D  604 (616)
                      . |+..  ..+.......++++|.   |+++.|..++..
T Consensus       241 ~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          241 D-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             T-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             C-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            5 6653  2344334568899998   887777665543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.84  E-value=3.1e-06  Score=82.65  Aligned_cols=234  Identities=11%  Similarity=0.081  Sum_probs=149.2

Q ss_pred             CcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEec--------------------cCCcEEEEEEcC-CCCEEE
Q psy3640         187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG--------------------HQNVVYAVAFSE-PYGCLT  245 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~--------------------h~~~I~~l~fs~-~~~lls  245 (616)
                      -....+++++++|+++.++..++.|..||..+++.. .+..                    ....+..+++.+ ++.++.
T Consensus        18 ~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             SSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             cCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            345678999999998888989999999998766543 2321                    113578999997 788887


Q ss_pred             EECCCcEEEEeCCCCceEEEee---C-CCCcEEEEEEeCC-CCCEEEEEEC-----------------CCeEEEEeCCCc
Q psy3640         246 GSYDRTCKLWDIKSGHEICTYR---G-HQNVVYAVAFSEP-YGDKILTGSF-----------------DKTLKLWASAKE  303 (616)
Q Consensus       246 ~s~d~~I~iwd~~~~~~~~~~~---~-h~~~V~~l~~~~~-~~~~l~s~s~-----------------dg~i~iwd~~~~  303 (616)
                      +...+.|..+|..+++......   + .......+++. + +++..++-..                 ++.|..+|..++
T Consensus        97 ~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            7777779999987664322111   1 12357889998 6 7877666432                 367888888776


Q ss_pred             ceeEEee--eceeeEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeEEeecCCcCEEEEEEcCCCCEEEEEEC------
Q psy3640         304 ECIQTYR--GHSAEVTFSPDQSTFCSC-SMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSF------  372 (616)
Q Consensus       304 ~~~~~~~--~~~~~v~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~------  372 (616)
                      +......  .....++++|+++.++++ +..+.|..|++....  ....+....+ ...++++++|++.++...      
T Consensus       176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~  254 (322)
T 2fp8_A          176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNM  254 (322)
T ss_dssp             EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred             EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence            5433222  234568999999976665 556889999987521  1112211223 688999999986666543      


Q ss_pred             ----CCcEEEEecccccCCcccccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy3640         373 ----DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSSLDGTAKLWDVRT  441 (616)
Q Consensus       373 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  441 (616)
                          .+.|..+|..                 ...+..+...    ...+..+++ .++.+.++...++.|..+++..
T Consensus       255 ~~~~~~~v~~~d~~-----------------G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          255 HGRVDPKGIKFDEF-----------------GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             TSCEEEEEEEECTT-----------------SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             cCCCccEEEEECCC-----------------CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence                3556677642                 2333333322    234555555 3555555555677888888753

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.84  E-value=2e-06  Score=84.01  Aligned_cols=233  Identities=12%  Similarity=0.046  Sum_probs=146.4

Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEe--------------------cCccce
Q psy3640         354 PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--------------------GHSQEI  413 (616)
Q Consensus       354 ~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~i  413 (616)
                      ...++++++++++++++..++.|..|+....                . ...+.                    ......
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~----------------~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p   82 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNS----------------G-FVDFAYASPYWNKAFCENSTDAEKRPLCGRT   82 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTT----------------C-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCC----------------c-eEEEecccccccccccccccchhccccCCCC
Confidence            4467889999987888888999999987521                1 11111                    011246


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec-----CCCCEEEEEEcC-CCCEEEEEeC---------------
Q psy3640         414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN-----HEDEVLDIAFDY-SGSKLATASS---------------  472 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~~-~~~~l~~~~~---------------  472 (616)
                      ..+++.+++..|+++...+.+..+|..++.. ..+..     .......+++++ +|...++...               
T Consensus        83 ~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~  161 (322)
T 2fp8_A           83 YDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTS  161 (322)
T ss_dssp             EEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHT
T ss_pred             ceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehccc
Confidence            7788887334455555555688899776532 22211     123578899999 8977666433               


Q ss_pred             --CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEE-eCCCcEEEEecCCc----eEEeEEeeccccCEE
Q psy3640         473 --DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA-SSDQTAKLWTVGGA----VELLQTFYGHSNEVS  545 (616)
Q Consensus       473 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~  545 (616)
                        ++.+..|+..+..... ....    ......++++++++.|+++ ..++.|.+|++...    ......   ..+ ..
T Consensus       162 ~~~g~v~~~d~~~~~~~~-~~~~----~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~  232 (322)
T 2fp8_A          162 DKTGRLIKYDPSTKETTL-LLKE----LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PG  232 (322)
T ss_dssp             CCCEEEEEEETTTTEEEE-EEEE----ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EE
T ss_pred             CCCceEEEEeCCCCEEEE-eccC----CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CC
Confidence              3668888876542211 1111    1123358999999977666 45689999998642    122222   223 78


Q ss_pred             EEEEecCCCEEEEEEC----------CCcEEEecCCcCeeeeEeccCc----ccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         546 KVSFHPTGKLVLSGSQ----------DTTCRLWSTESGECIQVLKAHE----DDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       546 ~l~~spdg~~l~s~s~----------dg~i~iwd~~~~~~~~~~~~h~----~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      .+++.++|++.++...          .+.|..+|. .|+.+..+....    ..+..+++ .++++.++....+.|.+++
T Consensus       233 gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          233 NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred             CeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence            8999999987666544          467888887 477777665432    34666766 4677777777788999998


Q ss_pred             cCCC
Q psy3640         612 SMNR  615 (616)
Q Consensus       612 ~~~~  615 (616)
                      +..+
T Consensus       311 ~~~~  314 (322)
T 2fp8_A          311 YDKK  314 (322)
T ss_dssp             C---
T ss_pred             cccc
Confidence            7643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.83  E-value=1.1e-06  Score=81.82  Aligned_cols=200  Identities=6%  Similarity=0.016  Sum_probs=140.1

Q ss_pred             EEEEEeccCC--cEEEEEEcCCCCEEEEE-C--CCcEEEEeCCCCceEEEeeCCC-CcEEEEEEeCCCCCEEEEEE-CCC
Q psy3640         221 EICTYRGHQN--VVYAVAFSEPYGCLTGS-Y--DRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFSEPYGDKILTGS-FDK  293 (616)
Q Consensus       221 ~~~~~~~h~~--~I~~l~fs~~~~lls~s-~--d~~I~iwd~~~~~~~~~~~~h~-~~V~~l~~~~~~~~~l~s~s-~dg  293 (616)
                      .+.++. |..  ....++|++++.+..++ .  ++.|++.|+.+++.+..+.-.. .....+++.   ++.+..+. .++
T Consensus        11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~---g~~lyv~t~~~~   86 (266)
T 2iwa_A           11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL---NEKLYQVVWLKN   86 (266)
T ss_dssp             EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEETTCS
T ss_pred             EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe---CCEEEEEEecCC
Confidence            444553 443  36899999987765443 2  6899999999999988876322 233456665   44555444 578


Q ss_pred             eEEEEeCCCcceeEEeeec-eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEE
Q psy3640         294 TLKLWASAKEECIQTYRGH-SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNML  367 (616)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l  367 (616)
                      .+.++|..+.+.+.++... .....+++++..++++..++.|.++|..+.+.+..+....     .....+.|. ++...
T Consensus        87 ~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly  165 (266)
T 2iwa_A           87 IGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW  165 (266)
T ss_dssp             EEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence            9999999999999888654 4455677888888887788999999999998888776322     236678888 66544


Q ss_pred             EEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC-------------ccceeEEEEccCCCEEEE-EeCCCc
Q psy3640         368 ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-------------SQEISNCLFNFSNSMIAS-SSLDGT  433 (616)
Q Consensus       368 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~-~~~dg~  433 (616)
                      +....++.|.+.|..                +.+.+..+...             ......++++|+++.+++ +...+.
T Consensus       166 vn~~~~~~V~vID~~----------------tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~  229 (266)
T 2iwa_A          166 ANIWQTDCIARISAK----------------DGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK  229 (266)
T ss_dssp             EEETTSSEEEEEETT----------------TCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             EecCCCCeEEEEECC----------------CCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence            444457899999997                55555544321             134578999999875554 546677


Q ss_pred             EEEEeCCC
Q psy3640         434 AKLWDVRT  441 (616)
Q Consensus       434 i~iwd~~~  441 (616)
                      +...++..
T Consensus       230 v~~i~l~~  237 (266)
T 2iwa_A          230 LFEIKLHL  237 (266)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            87777654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.79  E-value=8.1e-07  Score=81.58  Aligned_cols=190  Identities=8%  Similarity=0.086  Sum_probs=133.0

Q ss_pred             hhhheecccCCcc--eEEEEECCCCCEEEEEECCC--cEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEECCCc
Q psy3640         177 YEKFKMLKSHLLP--LTNITFDKFGTRCLTGSYDR--TCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGCLTGSYDRT  251 (616)
Q Consensus       177 ~~~~~~l~~h~~~--i~~v~~s~~g~~lasgs~dg--~i~iwd~~~~~~~~~~~~h~~~-I~~l~fs~~~~lls~s~d~~  251 (616)
                      ++.++.+ .|...  ...+.|+ ++.+..+.+.+|  .|+++|+++++.+.++...... -..+++..+.-+.+.-.++.
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred             eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCE
Confidence            4445555 45444  4789998 677777777766  8999999999999888654332 12345543322446667999


Q ss_pred             EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece--------eeEEEcCCCC
Q psy3640         252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--------AEVTFSPDQS  323 (616)
Q Consensus       252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~  323 (616)
                      +.++|.++.+.+.++...... ..++   ++++.|+.+..++.|.++|..+.+.+.++....        ..+.+. ++.
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG-~glt---~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~  183 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEG-WGLT---HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE  183 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCC-CCEE---ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             EEEEECccCcEEEEEECCCCc-eEEe---cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence            999999999999998743322 3444   345666666667889999999998887765321        234555 665


Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEeecC------------CcCEEEEEEcCCCCEEEEEECC
Q psy3640         324 TFCSCSMDHTARIFNTNSGQEMHTLKAH------------TGPVISLQFSSDRNMLITGSFD  373 (616)
Q Consensus       324 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~l~~~~~~~~l~~g~~d  373 (616)
                      ..+....++.|.+.|.++++.+..+...            ..-.+.|+|+|+++.|++.+..
T Consensus       184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            5555556889999999999998887642            1345889999998888777743

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.76  E-value=1.4e-06  Score=80.04  Aligned_cols=189  Identities=11%  Similarity=0.080  Sum_probs=131.2

Q ss_pred             EEEEEeccCCc--EEEEEEcCCCCEE-EEECCC--cEEEEeCCCCceEEEeeCCCCc-EEEEEEeCCCCCEEEEEE-CCC
Q psy3640         221 EICTYRGHQNV--VYAVAFSEPYGCL-TGSYDR--TCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGDKILTGS-FDK  293 (616)
Q Consensus       221 ~~~~~~~h~~~--I~~l~fs~~~~ll-s~s~d~--~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s~s-~dg  293 (616)
                      .+.++ .|...  ...+.|+ ++.+. +.+.+|  .|+++|+++++.+..+...... --.++..   ++.+.... .++
T Consensus        33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~---g~~ly~ltw~~~  107 (262)
T 3nol_A           33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW---KDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE---TTEEEEEESSSS
T ss_pred             EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe---CCEEEEEEeeCC
Confidence            34455 45443  4788898 56644 666665  9999999999998888743322 2335544   45555554 488


Q ss_pred             eEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEEE
Q psy3640         294 TLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNMLI  368 (616)
Q Consensus       294 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~  368 (616)
                      .+.++|..+.+.+.++........+.+++..|+....++.|.++|..+.+.+.++....     ..++.+.|. +|...+
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            99999999999999988666556666788888877778889999999999888876422     334567776 665554


Q ss_pred             EEECCCcEEEEecccccCCcccccccccccCCcceEEEec------------CccceeEEEEccCCCEEEEEeCC
Q psy3640         369 TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG------------HSQEISNCLFNFSNSMIASSSLD  431 (616)
Q Consensus       369 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~d  431 (616)
                      ..-.+..|.+.|..                +++.+..+..            ...-...++++|+++.|++.+..
T Consensus       187 n~w~~~~I~vIDp~----------------tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          187 NVWQTNKIVRIDPE----------------TGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EETTSSEEEEECTT----------------TCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEccCCeEEEEECC----------------CCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            44457889999987                3333333322            12345789999998887777653

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.70  E-value=2.9e-06  Score=77.85  Aligned_cols=185  Identities=8%  Similarity=0.061  Sum_probs=131.0

Q ss_pred             hhheecccCCcc--eEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcE--EEEEEcCCCCEEEEECCCcEE
Q psy3640         178 EKFKMLKSHLLP--LTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV--YAVAFSEPYGCLTGSYDRTCK  253 (616)
Q Consensus       178 ~~~~~l~~h~~~--i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I--~~l~fs~~~~lls~s~d~~I~  253 (616)
                      +.++.+ .|...  ...+.|+. +.+.++.+.+|.|+++|+++++.+..+ -. ...  ..+++..+.-+++.-.++.+.
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred             EEEEEE-cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEEccCCEEE
Confidence            334444 34433  46888874 566677788889999999999988877 22 232  335665443355667899999


Q ss_pred             EEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece--------eeEEEcCCCCEE
Q psy3640         254 LWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--------AEVTFSPDQSTF  325 (616)
Q Consensus       254 iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~l  325 (616)
                      ++|.++.+.+.++..... -+.+++   +++.|+.+..++.|.++|..+.+.+.++.-..        ..+.+. ++...
T Consensus       120 V~D~~Tl~~~~ti~~~~e-GwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly  194 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGE-GWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY  194 (268)
T ss_dssp             EEETTTTEEEEEEECSSC-CCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEECCcCcEEEEEeCCCc-eeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence            999999999999875332 245554   36777777778999999999999888775422        234444 66555


Q ss_pred             EEEeCCCcEEEEECCCCceeEEeecC-------------CcCEEEEEEcCCCCEEEEEE
Q psy3640         326 CSCSMDHTARIFNTNSGQEMHTLKAH-------------TGPVISLQFSSDRNMLITGS  371 (616)
Q Consensus       326 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~~g~  371 (616)
                      +....++.|.+.|.++++.+..+...             ..-.+.|+++|+++.|++.+
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            55556789999999999998877532             13568899999876666555

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.67  E-value=0.00076  Score=71.68  Aligned_cols=421  Identities=10%  Similarity=-0.028  Sum_probs=232.1

Q ss_pred             CcceEEEEECCCCCEEEEE-ECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-E-EEEECCCcEEEEeCCCCceE
Q psy3640         187 LLPLTNITFDKFGTRCLTG-SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-C-LTGSYDRTCKLWDIKSGHEI  263 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasg-s~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-l-ls~s~d~~I~iwd~~~~~~~  263 (616)
                      ...+..++|++.+..|..+ ..++.|..+++........+...-.....+++.+.+. + ++-...+.|.+.+++.....
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~  115 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ  115 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence            3467899999976666554 4578899999876554444443334567888876554 4 35566788999998765443


Q ss_pred             EEeeCCCCcEEEEEEeCCCCCEEEEE-ECCCeEEEEeCCCcceeEEee--eceeeEEEcCCCCEEEEEe-CCCcEEEEEC
Q psy3640         264 CTYRGHQNVVYAVAFSEPYGDKILTG-SFDKTLKLWASAKEECIQTYR--GHSAEVTFSPDQSTFCSCS-MDHTARIFNT  339 (616)
Q Consensus       264 ~~~~~h~~~V~~l~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~~-~dg~i~i~d~  339 (616)
                      ..+...-.....+++.|..+.++++- +..+.|...++..........  .....+++++++..|+.+. ..+.|..+|+
T Consensus       116 ~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          116 VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence            33334456678999994455444443 225677777776554333332  2345679999877776665 4578999998


Q ss_pred             CCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc------------cccccC-------C
Q psy3640         340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE------------STYRAS-------H  400 (616)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~-------~  400 (616)
                      ..... ..+........++++.. +..+++-...+.|...|.............            ......       .
T Consensus       196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng  273 (628)
T 4a0p_A          196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNG  273 (628)
T ss_dssp             TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGG
T ss_pred             CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCC
Confidence            75443 33333344556788764 344444444677877775433211100000            000000       0


Q ss_pred             cce-EEEecCccceeEEE-----EccC-------CCEEEEEeCCCcEEEEeCCCCeE-EEEeec-CCCCEEEEEEcCCCC
Q psy3640         401 KPI-HILTGHSQEISNCL-----FNFS-------NSMIASSSLDGTAKLWDVRTMCC-FYTLKN-HEDEVLDIAFDYSGS  465 (616)
Q Consensus       401 ~~~-~~~~~~~~~i~~~~-----~~~~-------~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~~~~~~  465 (616)
                      .+. ..+....+...+.+     ..++       ..+++.+. ...|+-..+..... ...+.. .-..+..++|++...
T Consensus       274 ~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~  352 (628)
T 4a0p_A          274 HCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDK  352 (628)
T ss_dssp             GCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTT
T ss_pred             CcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccCceEEEEehhcCCceEEEEecCCC
Confidence            000 00000001111100     1111       12333333 23455554433211 111211 224578899998766


Q ss_pred             EEEEEe-CCCcEEEEecCCceeeeeEEec---cCCCeeeEEEEEEcCCCCEEE-EEeCCCcEEEEecCCceEEeEEeecc
Q psy3640         466 KLATAS-SDQTANLWTVGGAVELLQTFYG---HSNEVSKVLDIAFDYSGSKLA-TASSDQTAKLWTVGGAVELLQTFYGH  540 (616)
Q Consensus       466 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~h  540 (616)
                      .|+.+. ..+.|+.++...... ...+..   ..........++++..++.|+ +-+..+.|.+.+++.. .........
T Consensus       353 ~iy~sD~~~~~I~r~~~~g~~~-~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~-~~~~l~~~~  430 (628)
T 4a0p_A          353 QLYWIDSRQNMIRKAQEDGSQG-FTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGR-SVGVVLKGE  430 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSCSC-EEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-EEEEEEECT
T ss_pred             eEEEEecCcceEEEEEcCCCCc-eEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCC-eEEEEEeCC
Confidence            666554 457788888765321 111111   001233567899999877655 5556788999998764 222223334


Q ss_pred             ccCEEEEEEec-CCCEEEEEECCC--cEEEecCCcCeeeeEe-ccCcccEEEEEEeeCCCEEEEeeC-CCcEEEcccC
Q psy3640         541 SNEVSKVSFHP-TGKLVLSGSQDT--TCRLWSTESGECIQVL-KAHEDDVFSCGFNYNGDTIITASK-DNTCCIWRSM  613 (616)
Q Consensus       541 ~~~v~~l~~sp-dg~~l~s~s~dg--~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~t~s~-Dg~i~vW~~~  613 (616)
                      ......+++.| .|.+..+-....  .|...+++ |.....+ ...-...+.+++.++++.|..+.. .+.|...++.
T Consensus       431 l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~d  507 (628)
T 4a0p_A          431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS  507 (628)
T ss_dssp             TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            56789999999 454444433222  46555554 4333333 323445688999998777766654 4677777664

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.67  E-value=1.8e-06  Score=79.24  Aligned_cols=188  Identities=8%  Similarity=0.005  Sum_probs=129.3

Q ss_pred             EEEEEeccCC--cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcE--EEEEEeCCCCCEEEEEECCCeEE
Q psy3640         221 EICTYRGHQN--VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV--YAVAFSEPYGDKILTGSFDKTLK  296 (616)
Q Consensus       221 ~~~~~~~h~~--~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V--~~l~~~~~~~~~l~s~s~dg~i~  296 (616)
                      .+.++ .|..  -...+.|+.+.-+.+.+.+|.|+++|+++++.+..+ -. ...  -.+++.  .+...+..-.++.+.
T Consensus        45 Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~  119 (268)
T 3nok_A           45 IIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLF  119 (268)
T ss_dssp             EEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEE
T ss_pred             EEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEE
Confidence            33444 4443  347888875322458888899999999999988777 22 233  335553  345555555689999


Q ss_pred             EEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEEEEEE
Q psy3640         297 LWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNMLITGS  371 (616)
Q Consensus       297 iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~~g~  371 (616)
                      ++|..+.+.+.++........+.+++..|+.+..++.|.++|..+.+.+.++....     ..++.+.|. +|...+..-
T Consensus       120 V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw  198 (268)
T 3nok_A          120 TWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW  198 (268)
T ss_dssp             EEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred             EEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence            99999999999988665555666788888888888999999999999888876422     245667777 665444444


Q ss_pred             CCCcEEEEecccccCCcccccccccccCCcceEEEec-------------CccceeEEEEccCCCEEEEEeC
Q psy3640         372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-------------HSQEISNCLFNFSNSMIASSSL  430 (616)
Q Consensus       372 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~  430 (616)
                      .+..|.+.|..                +++.+..+..             ...-...++++|+++.|++.+.
T Consensus       199 ~s~~I~vIDp~----------------TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          199 HSSDVLEIDPA----------------TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TCSEEEEECTT----------------TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCCeEEEEeCC----------------CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            57889999987                3333333321             1235678999998766665553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.65  E-value=7.1e-05  Score=72.31  Aligned_cols=227  Identities=13%  Similarity=0.084  Sum_probs=133.9

Q ss_pred             eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEecccccCCccc
Q psy3640         313 SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--SIVVWDIQYQFGTRNA  390 (616)
Q Consensus       313 ~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~  390 (616)
                      ...++++++++.+++-..++.|..||.... ....+. .......+++.++|+++++.....  .|..+|..        
T Consensus        34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~--------  103 (306)
T 2p4o_A           34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS--------  103 (306)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT--------
T ss_pred             cceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC--------
Confidence            456789999887777667889999997753 333333 345678999999999666554433  35555543        


Q ss_pred             ccccccccCCcceEEEe-cCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-EEEee---------cCCCCEEEEE
Q psy3640         391 YAESTYRASHKPIHILT-GHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC-FYTLK---------NHEDEVLDIA  459 (616)
Q Consensus       391 ~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~---------~~~~~v~~l~  459 (616)
                              ......... ........++..+++..+++...++.|+.+|..++.. +....         ..-.....+ 
T Consensus       104 --------~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-  174 (306)
T 2p4o_A          104 --------DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-  174 (306)
T ss_dssp             --------TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE-
T ss_pred             --------CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc-
Confidence                    211111111 1111223344444444455444588999999876531 21111         111234555 


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEecCC-cee-eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEE
Q psy3640         460 FDYSGSKLATA-SSDQTANLWTVGG-AVE-LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQT  536 (616)
Q Consensus       460 ~~~~~~~l~~~-~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  536 (616)
                       ++++..|+.+ ...+.|..|++.. +.. ....+...    .....++++++|+++++....+.|.+++.......+..
T Consensus       175 -s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~~~~~~  249 (306)
T 2p4o_A          175 -KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQ  249 (306)
T ss_dssp             -EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEEC
T ss_pred             -CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCCCCEEEEee
Confidence             7788766555 4567899999864 211 11111111    12335799999998777777899999998643222222


Q ss_pred             eeccccCEEEEEEe---cCCCEEEEEECCC
Q psy3640         537 FYGHSNEVSKVSFH---PTGKLVLSGSQDT  563 (616)
Q Consensus       537 ~~~h~~~v~~l~~s---pdg~~l~s~s~dg  563 (616)
                      ........++++|.   |+++.|..++..+
T Consensus       250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          250 AEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cccccCCceEEEEecccCCCCEEEEECCCC
Confidence            32233568999998   8988777766543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.64  E-value=6.5e-06  Score=74.94  Aligned_cols=189  Identities=10%  Similarity=0.066  Sum_probs=129.5

Q ss_pred             EEEEEeccCC--cEEEEEEcCCCCEE-EEECC--CcEEEEeCCCCceEEEeeCCCCc-EEEEEEeCCCCCEEEEEECCCe
Q psy3640         221 EICTYRGHQN--VVYAVAFSEPYGCL-TGSYD--RTCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGDKILTGSFDKT  294 (616)
Q Consensus       221 ~~~~~~~h~~--~I~~l~fs~~~~ll-s~s~d--~~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~~~~~~~l~s~s~dg~  294 (616)
                      .+.++ +|..  -...+.|++ +.+. +.+.+  ..|+.+|+++++.+....-.... --.+++.  .+......-.++.
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~   86 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence            34455 5654  466899987 4544 66654  48999999999998887643322 2344544  2334444445889


Q ss_pred             EEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCC-----cCEEEEEEcCCCCEEEE
Q psy3640         295 LKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHT-----GPVISLQFSSDRNMLIT  369 (616)
Q Consensus       295 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~l~~  369 (616)
                      +.++|..+.+.+.++........+.+++..|+.+..++.|.++|..+.+.+.++....     ..++.+.+. +|...+.
T Consensus        87 v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyan  165 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLAN  165 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred             EEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEE
Confidence            9999999999999988666666677788888888788999999999999888876432     345667765 5655544


Q ss_pred             EECCCcEEEEecccccCCcccccccccccCCcceEEEe-------------cCccceeEEEEccCCCEEEEEeC
Q psy3640         370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT-------------GHSQEISNCLFNFSNSMIASSSL  430 (616)
Q Consensus       370 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~  430 (616)
                      .-.+..|.+.|..+                ++.+..+.             ....-...++++|+++.|++.+.
T Consensus       166 vw~s~~I~vIDp~t----------------G~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          166 VWLTSRIARIDPAS----------------GKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             ETTTTEEEEECTTT----------------CBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             ECCCCeEEEEECCC----------------CCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            44577899999873                33333222             12235678999998877776664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.64  E-value=1.5e-05  Score=72.49  Aligned_cols=187  Identities=7%  Similarity=0.044  Sum_probs=129.1

Q ss_pred             hheecccCCc--ceEEEEECCCCCEEEEEECCC--cEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEECCCcEE
Q psy3640         179 KFKMLKSHLL--PLTNITFDKFGTRCLTGSYDR--TCKLWDIKSGHEICTYRGHQNV-VYAVAFSEPYGCLTGSYDRTCK  253 (616)
Q Consensus       179 ~~~~l~~h~~--~i~~v~~s~~g~~lasgs~dg--~i~iwd~~~~~~~~~~~~h~~~-I~~l~fs~~~~lls~s~d~~I~  253 (616)
                      .++.+ .|..  -...+.|++ +.+..+.+.+|  .|+++|+++++.+.+..-.... --.+++..+.-+.+.-.++.+.
T Consensus        11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred             EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence            34444 4543  366899987 55556666654  8999999999999888644332 1334444322244666799999


Q ss_pred             EEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeece--------eeEEEcCCCCEE
Q psy3640         254 LWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS--------AEVTFSPDQSTF  325 (616)
Q Consensus       254 iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~l  325 (616)
                      ++|.++.+.+.++...... ..++.   ++..|+.+..++.|.++|..+.+.+.++....        ..+.+. ++...
T Consensus        89 v~D~~tl~~~~ti~~~~~G-wglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEG-WALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             EEETTTTEEEEEEECSSCC-CEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             EEECCcCcEEEEEeCCCCc-eEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence            9999999999998754332 45553   35666666678999999999998888775432        223333 55555


Q ss_pred             EEEeCCCcEEEEECCCCceeEEeecC-------------CcCEEEEEEcCCCCEEEEEEC
Q psy3640         326 CSCSMDHTARIFNTNSGQEMHTLKAH-------------TGPVISLQFSSDRNMLITGSF  372 (616)
Q Consensus       326 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~~~~~~l~~g~~  372 (616)
                      +....+..|.+.|.++++.+..+...             ..-.+.|+++|+++.|++.+.
T Consensus       164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            55556789999999999998887522             124688999998887777664

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.63  E-value=0.0018  Score=73.71  Aligned_cols=378  Identities=10%  Similarity=0.086  Sum_probs=194.5

Q ss_pred             cEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEe-eCCCCcEEEEEEeCC-----C
Q psy3640         210 TCKLWDIKSGHEICTYRGH-QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEP-----Y  282 (616)
Q Consensus       210 ~i~iwd~~~~~~~~~~~~h-~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~-~~h~~~V~~l~~~~~-----~  282 (616)
                      .|++.+......+..+... ...|.+.+.+. ..++.++ ++.+.++.+..++..... ..-...|.|+++.+.     .
T Consensus       493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~  570 (1158)
T 3ei3_A          493 SVRLVSQEPKALVSEWKEPQAKNISVASCNS-SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGL  570 (1158)
T ss_dssp             CEEEEESSSCCEEEEECCTTCCCCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTC
T ss_pred             EEEEEECCCCeEEEEEECCCCCEEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCccc
Confidence            3566665555555555533 23566666543 3444444 678888888766422111 123568999998742     2


Q ss_pred             CCEEEEEEC-CCeEEEEeCCCcceeEEeee----ceeeEEEc--CCCCEEEEEeCCCcEEEEEC--CCCceeEE--eecC
Q psy3640         283 GDKILTGSF-DKTLKLWASAKEECIQTYRG----HSAEVTFS--PDQSTFCSCSMDHTARIFNT--NSGQEMHT--LKAH  351 (616)
Q Consensus       283 ~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~----~~~~v~~~--~~~~~l~~~~~dg~i~i~d~--~~~~~~~~--~~~~  351 (616)
                      ++.++.|.+ |++++|+++.+.+.+....-    ....+.+.  ....+|.+|-.||.+.-+.+  .+|+....  ...-
T Consensus       571 s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG  650 (1158)
T 3ei3_A          571 SPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG  650 (1158)
T ss_dssp             CSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC
T ss_pred             ccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC
Confidence            478999997 99999999987766544321    12223221  24467889999998766554  44544322  1111


Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee-EEEEccC--CCEEEEE
Q psy3640         352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS-NCLFNFS--NSMIASS  428 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~--~~~l~~~  428 (616)
                      ..++.=..+...+..-+.+..+....++.-+                 .. .....-....+. ...|+..  ..-++..
T Consensus       651 ~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-----------------~~-l~~s~l~~~~v~~~~~F~se~~~~g~v~~  712 (1158)
T 3ei3_A          651 TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-----------------HK-LVFSNVNLKEVNYMCPLNSDGYPDSLALA  712 (1158)
T ss_dssp             SSCCEEEEEESSSCEEEEEESSSCEEEEESS-----------------SS-EEEEEBSSSCCCEEEEECCSSSTTEEEEE
T ss_pred             CCceEEEEEeeCCceeEEEECCCCEEEEEcC-----------------Cc-eEEeccChHHhceEeccCcccCCCcEEEE
Confidence            3344433444334333333334444444321                 11 111111111222 2333321  2234433


Q ss_pred             eCCCcEEEEeCCCC--eEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC--------------------------------
Q psy3640         429 SLDGTAKLWDVRTM--CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ--------------------------------  474 (616)
Q Consensus       429 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--------------------------------  474 (616)
                      + ++.+++..+...  -.++.+. -...+..++++|..+.++.+..+.                                
T Consensus       713 ~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1158)
T 3ei3_A          713 N-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFS  790 (1158)
T ss_dssp             C-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-
T ss_pred             c-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccc
Confidence            3 445888766432  2233333 346788888888877665544221                                


Q ss_pred             -----------------cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCC-CCEEEEEe----------CCCcEEEEe
Q psy3640         475 -----------------TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYS-GSKLATAS----------SDQTAKLWT  526 (616)
Q Consensus       475 -----------------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~----------~dg~i~vwd  526 (616)
                                       .+++.|..+.................+..+.|..+ ..++++|+          ..|.|.+|+
T Consensus       791 ~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~  870 (1158)
T 3ei3_A          791 SSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQ  870 (1158)
T ss_dssp             ---------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEE
T ss_pred             ccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEE
Confidence                             13333333221111111111122223333344433 46888887          357899999


Q ss_pred             cCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCc
Q psy3640         527 VGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNT  606 (616)
Q Consensus       527 ~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~  606 (616)
                      +.+..-....-....++|++++-- +| +|++|- ..++++|++...+.+..-..+-..|..+.....+++++.|..-..
T Consensus       871 v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~S  947 (1158)
T 3ei3_A          871 YSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRS  947 (1158)
T ss_dssp             EETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBC
T ss_pred             EECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhhe
Confidence            864322222223456889988744 45 455443 368999999866544311111111223333345778888887777


Q ss_pred             EEEccc
Q psy3640         607 CCIWRS  612 (616)
Q Consensus       607 i~vW~~  612 (616)
                      |.+...
T Consensus       948 v~~~~y  953 (1158)
T 3ei3_A          948 VLLLAY  953 (1158)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            766543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.60  E-value=7.7e-05  Score=73.43  Aligned_cols=243  Identities=6%  Similarity=-0.131  Sum_probs=148.5

Q ss_pred             CcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEE
Q psy3640         187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEIC  264 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~  264 (616)
                      .+..+|.+..+++ +|+.+. ...|+..++........+. ....+..++|.+... +. +-...+.|..+++..+....
T Consensus        33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~  109 (349)
T 3v64_C           33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE  109 (349)
T ss_dssp             TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence            3455677777743 444433 3458888887665544444 344578999997655 44 55567899999998776544


Q ss_pred             EeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEe-CC-CcEEEEEC
Q psy3640         265 TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCS-MD-HTARIFNT  339 (616)
Q Consensus       265 ~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~-~d-g~i~i~d~  339 (616)
                      .+.........+++.+..+.+.++-...+.|.+.++..........   .....+++.|.+..++... .. +.|..+++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            4443344567888884455566666667899999987654333332   2345678999766665554 34 77888887


Q ss_pred             CCCceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEE
Q psy3640         340 NSGQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF  418 (616)
Q Consensus       340 ~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  418 (616)
                      ............-.....++++|++..|..+. ..+.|..+|+..                ................+++
T Consensus       190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG----------------~~~~~~~~~~~~~P~giav  253 (349)
T 3v64_C          190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----------------SHRKAVISQGLPHPFAITV  253 (349)
T ss_dssp             TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------------CSCEEEECSSCSSEEEEEE
T ss_pred             CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC----------------CceEEEEeCCCCCceEEEE
Confidence            64332222222334568999998777666655 456788888752                1112222222334456666


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCeEEEEee
Q psy3640         419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLK  449 (616)
Q Consensus       419 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  449 (616)
                       ..+.+.++-...+.|..+|..+++....+.
T Consensus       254 -~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          254 -FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             -ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             -ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence             345555555566777777766665555444

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.59  E-value=0.0013  Score=69.89  Aligned_cols=376  Identities=9%  Similarity=-0.014  Sum_probs=213.1

Q ss_pred             CEEEEEECCCcEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEE
Q psy3640         200 TRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV  276 (616)
Q Consensus       200 ~~lasgs~dg~i~iwd~~~~~~~~~~~-~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l  276 (616)
                      .+|+.+ ....|+..++++......+. ..-..+..++|.+.+. +. +-..++.|..+++........+.........+
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM   85 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred             cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence            345444 34578999998765443332 2335688999998665 33 55678999999987665444444333456788


Q ss_pred             EEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecC
Q psy3640         277 AFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTLKAH  351 (616)
Q Consensus       277 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~  351 (616)
                      ++.+..+++.++-...+.|.+.++..........   .....+++.|....|+....  .+.|...++...... .+...
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~~~  164 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPN  164 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEECS
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEECC
Confidence            8884445555665667889999987654322221   23456789987666666553  467888887644433 33234


Q ss_pred             CcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC
Q psy3640         352 TGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL  430 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  430 (616)
                      -.....++++++++.|..+.. .+.|...|+..                ... ..+.........+++.. +.++++-..
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG----------------~~~-~v~~~~l~~P~glav~~-~~ly~tD~~  226 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG----------------LNR-EVIADDLPHPFGLTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS----------------CSC-EEEEECCSCEEEEEEET-TEEEEEETT
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCCC----------------Cce-EEeeccCCCceEEEEEC-CEEEEecCC
Confidence            456789999998777666654 57788888752                111 22222333344666654 444444445


Q ss_pred             CCcEEEEeCCCCeEEEEeecCCCCEEE------------------------EEE----------cCCCC-----------
Q psy3640         431 DGTAKLWDVRTMCCFYTLKNHEDEVLD------------------------IAF----------DYSGS-----------  465 (616)
Q Consensus       431 dg~i~iwd~~~~~~~~~~~~~~~~v~~------------------------l~~----------~~~~~-----------  465 (616)
                      .+.|...|..+++....+......+.+                        ++.          .|.|-           
T Consensus       227 ~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~  306 (628)
T 4a0p_A          227 RRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA  306 (628)
T ss_dssp             TTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC
T ss_pred             CCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc
Confidence            678888887666443333221111111                        111          11111           


Q ss_pred             ---EEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeec--
Q psy3640         466 ---KLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYG--  539 (616)
Q Consensus       466 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~--  539 (616)
                         +|+.+ ....|+-..+.......  ..........+..+++++....|+.+.. .+.|..++....... ..+..  
T Consensus       307 ~~~~Ll~s-~~~~i~~i~l~~~~~~~--~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~-~v~~~~~  382 (628)
T 4a0p_A          307 PTTFLLFS-QKSAINRMVIDEQQSPD--IILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGF-TVVVSSV  382 (628)
T ss_dssp             CSSEEEEE-ETTEEEEECCCTTCCCC--EECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEC---
T ss_pred             ccceeeee-ccceEEEEecccccCce--EEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCce-EEEEccc
Confidence               11111 11122222222110000  0001122344678899987777766654 677888887653211 11211  


Q ss_pred             ----cccCEEEEEEecCCCEEE-EEECCCcEEEecCCcCeeeeEe-ccCcccEEEEEEeeC-CCEEEE
Q psy3640         540 ----HSNEVSKVSFHPTGKLVL-SGSQDTTCRLWSTESGECIQVL-KAHEDDVFSCGFNYN-GDTIIT  600 (616)
Q Consensus       540 ----h~~~v~~l~~spdg~~l~-s~s~dg~i~iwd~~~~~~~~~~-~~h~~~V~~l~~s~~-~~~l~t  600 (616)
                          ....+..+++.+.++.|. +-+..+.|.+.++. |+....+ ........++++.|. |.+.+|
T Consensus       383 ~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~t  449 (628)
T 4a0p_A          383 PSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFT  449 (628)
T ss_dssp             -----CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred             ccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEe
Confidence                234688999999876554 55567889999885 5544333 334456889999984 444444

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.53  E-value=0.00046  Score=66.78  Aligned_cols=237  Identities=10%  Similarity=0.043  Sum_probs=143.1

Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640         325 FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI  403 (616)
Q Consensus       325 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  403 (616)
                      |+.+. ...|+..|+.+.+....+. ......+++|++.++.|+.. ...+.|..+++.....            .....
T Consensus         4 ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~------------~~~~~   69 (316)
T 1ijq_A            4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYD   69 (316)
T ss_dssp             EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CE
T ss_pred             EEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC------------CcccE
Confidence            33333 3568888988776555444 34567899999876655554 4468888888752100            01111


Q ss_pred             EEEecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEe
Q psy3640         404 HILTGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD--QTANLWT  480 (616)
Q Consensus       404 ~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d--g~i~iwd  480 (616)
                      ............+++.+.+. +.++-...+.|.+++.........+.........++++|.+..|+.+...  +.|..++
T Consensus        70 ~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            22222224457888886554 44555667889999987554333333344678999999977666655543  6788888


Q ss_pred             cCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceE-EeEEeeccccCEEEEEEecCCCEEEE
Q psy3640         481 VGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVE-LLQTFYGHSNEVSKVSFHPTGKLVLS  558 (616)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~l~~spdg~~l~s  558 (616)
                      +.....  ..+..  ........+++++++..|+.+. ..+.|..+|+..... .+............+++. .+.++++
T Consensus       150 ~dG~~~--~~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~  224 (316)
T 1ijq_A          150 LNGVDI--YSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWT  224 (316)
T ss_dssp             TTSCCE--EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEE
T ss_pred             CCCCCe--EEEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEE
Confidence            765322  11211  1233456899999877776665 467899999875322 221111123446778875 3555555


Q ss_pred             EECCCcEEEecCCcCeeeeEec
Q psy3640         559 GSQDTTCRLWSTESGECIQVLK  580 (616)
Q Consensus       559 ~s~dg~i~iwd~~~~~~~~~~~  580 (616)
                      -...+.|..++..+|+.+..+.
T Consensus       225 d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          225 DIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             ETTTTEEEEEETTTCCCCEEEE
T ss_pred             ECCCCeEEEEeCCCCcceEEEe
Confidence            5567889999887777665553

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.51  E-value=0.00015  Score=72.54  Aligned_cols=242  Identities=6%  Similarity=-0.106  Sum_probs=149.6

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCceEEEe
Q psy3640         189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHEICTY  266 (616)
Q Consensus       189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~~~~~  266 (616)
                      .-+|.+..+. .+|+.+. ...|+..++........+. ....+..++|.+.+. ++ +-...+.|..+++..+.....+
T Consensus        78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  154 (386)
T 3v65_B           78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  154 (386)
T ss_dssp             SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE
T ss_pred             CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE
Confidence            3456666663 3444433 3568888887766554444 345578999997555 44 5556789999999877654444


Q ss_pred             eCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC-C-CcEEEEECCC
Q psy3640         267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM-D-HTARIFNTNS  341 (616)
Q Consensus       267 ~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~-d-g~i~i~d~~~  341 (616)
                      .........+++.+..+.++++-...+.|.+.++........+.   .....+++.|.+..++.... . +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            43344556788884455555666667888888887554333332   23456789987776665543 3 6788888865


Q ss_pred             CceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640         342 GQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF  420 (616)
Q Consensus       342 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  420 (616)
                      ..........-.....|+++|++..|..+. ..+.|..+|+.                .................+++ .
T Consensus       235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d----------------G~~~~~~~~~~~~~P~giav-~  297 (386)
T 3v65_B          235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD----------------GSHRKAVISQGLPHPFAITV-F  297 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT----------------SCSCEEEECSSCSSEEEEEE-E
T ss_pred             CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC----------------CCeeEEEEECCCCCceEEEE-E
Confidence            433333333344568999998766666554 45678888875                21222222222334456666 4


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeec
Q psy3640         421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKN  450 (616)
Q Consensus       421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  450 (616)
                      .+.++++....+.|..+|..+++....+..
T Consensus       298 ~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          298 EDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            455566666677888888666665555543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.48  E-value=3.2e-06  Score=91.28  Aligned_cols=264  Identities=9%  Similarity=0.027  Sum_probs=150.9

Q ss_pred             EEEECC-CCCEEEEEECCC-----------cEEEEECCCCcE--EEEEe-ccCCcEEEEEEcCCCCEE-EEE-CCCcEEE
Q psy3640         192 NITFDK-FGTRCLTGSYDR-----------TCKLWDIKSGHE--ICTYR-GHQNVVYAVAFSEPYGCL-TGS-YDRTCKL  254 (616)
Q Consensus       192 ~v~~s~-~g~~lasgs~dg-----------~i~iwd~~~~~~--~~~~~-~h~~~I~~l~fs~~~~ll-s~s-~d~~I~i  254 (616)
                      +.++.| +|+.++.|+.+.           .+.+||..+++-  +..+. .+.....++++..+++++ .|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 889999988643           588999988753  22332 233334457788888865 555 4568999


Q ss_pred             EeCCCCceEEEeeCCCC-cEEEEEEeCCCCCEEEEEE-CC-----CeEEEEeCCCcceeEEee-------eceeeEEEcC
Q psy3640         255 WDIKSGHEICTYRGHQN-VVYAVAFSEPYGDKILTGS-FD-----KTLKLWASAKEECIQTYR-------GHSAEVTFSP  320 (616)
Q Consensus       255 wd~~~~~~~~~~~~h~~-~V~~l~~~~~~~~~l~s~s-~d-----g~i~iwd~~~~~~~~~~~-------~~~~~v~~~~  320 (616)
                      ||..+++-...-..+.. .-.+++.. ++++.++.|+ .+     ..+.+||..+.+....-.       .......+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            99988754332221111 11233443 5789999988 34     568999998876443210       0000012234


Q ss_pred             CCCEEEEEeCCC---------cEEEEECCCCceeEEeecCCc---------CEEEEEEcC-CCCEEEEEECCC-------
Q psy3640         321 DQSTFCSCSMDH---------TARIFNTNSGQEMHTLKAHTG---------PVISLQFSS-DRNMLITGSFDS-------  374 (616)
Q Consensus       321 ~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~---------~v~~l~~~~-~~~~l~~g~~dg-------  374 (616)
                      ++..++.++.+|         .+..||..+.........+..         .-.++.|.. ++++++.|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            555566665544         467888877654433322211         234444543 677788887532       


Q ss_pred             ----cEEEEecccccCCcccccccccccCCcceEEE--ecCccc-eeEEEEccCCCEEEEEeCC-----------CcEEE
Q psy3640         375 ----SIVVWDIQYQFGTRNAYAESTYRASHKPIHIL--TGHSQE-ISNCLFNFSNSMIASSSLD-----------GTAKL  436 (616)
Q Consensus       375 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-i~~~~~~~~~~~l~~~~~d-----------g~i~i  436 (616)
                          .+.+||...                ..-....  ...... -.+++..+++++++.|+.+           ..+.+
T Consensus       429 ~~~~~v~~yd~~~----------------~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~  492 (656)
T 1k3i_A          429 TNAHIITLGEPGT----------------SPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI  492 (656)
T ss_dssp             CCEEEEECCSTTS----------------CCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred             CcceEEEcCCCCC----------------CCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE
Confidence                466666542                1111111  111222 2344566799999999864           46899


Q ss_pred             EeCCCCeEEEE--eecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640         437 WDVRTMCCFYT--LKNHEDEVLDIAFDYSGSKLATASS  472 (616)
Q Consensus       437 wd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~  472 (616)
                      ||..+.+-...  ............+.|+++.++.|+.
T Consensus       493 ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          493 YVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            99887654321  1111122334556789999999885

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.48  E-value=0.00077  Score=67.56  Aligned_cols=249  Identities=10%  Similarity=0.016  Sum_probs=151.7

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcc
Q psy3640         324 TFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKP  402 (616)
Q Consensus       324 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  402 (616)
                      +++.+. ...|+..++.......... ....+..++|++.+..|.... ..+.|+.+++.....            ....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~------------~~~~  150 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSY  150 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------------------CCC
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC------------CCcc
Confidence            344333 4678888887665444433 456788999998666665554 467888888752100            0122


Q ss_pred             eEEEecCccceeEEEEccC-CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEE
Q psy3640         403 IHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS--DQTANLW  479 (616)
Q Consensus       403 ~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iw  479 (616)
                      .............+++.+. +.+.++-...+.|.+.++........+...-.....++++|.+..|+.+..  .+.|...
T Consensus       151 ~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~  230 (400)
T 3p5b_L          151 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG  230 (400)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred             eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence            2233334455678888874 445555556788999998766544444444556899999997666666553  3678888


Q ss_pred             ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeE-EeeccccCEEEEEEecCCCEEE
Q psy3640         480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQ-TFYGHSNEVSKVSFHPTGKLVL  557 (616)
Q Consensus       480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~-~~~~h~~~v~~l~~spdg~~l~  557 (616)
                      ++.......  +..  ........+++++++..|+.+.. .+.|..+|+........ .....-.....+++. .+.++.
T Consensus       231 ~~dG~~~~~--~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lyw  305 (400)
T 3p5b_L          231 GLNGVDIYS--LVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW  305 (400)
T ss_dssp             ETTSCSCEE--EEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEE
T ss_pred             eCCCCccEE--EEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEE
Confidence            887642221  111  12234567999988887777654 67899999876422211 111123345577763 344555


Q ss_pred             EEECCCcEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640         558 SGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF  591 (616)
Q Consensus       558 s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~  591 (616)
                      +-...+.|..++..+|+.+..+........++..
T Consensus       306 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v  339 (400)
T 3p5b_L          306 TDIINEAIFSANRLTGSDVNLLAENLLSPEDMVL  339 (400)
T ss_dssp             EESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred             ecCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence            6666788999998888877766544444555543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.47  E-value=9.1e-05  Score=75.14  Aligned_cols=239  Identities=12%  Similarity=0.089  Sum_probs=139.9

Q ss_pred             eeeEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC-C----cEEEEecccccC
Q psy3640         313 SAEVTFSP-DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD-S----SIVVWDIQYQFG  386 (616)
Q Consensus       313 ~~~v~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-g----~i~iwd~~~~~~  386 (616)
                      ...++++| ++..|+++...+.|+.+|+..+...... ........++|+++++.|+++... +    .+...+...   
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g---  214 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES---  214 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG---
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC---
Confidence            45678998 4666766666688999999876544433 345567899999999966666542 2    233333221   


Q ss_pred             CcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEeec-CCCCEEEEEEcCCC
Q psy3640         387 TRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTLKN-HEDEVLDIAFDYSG  464 (616)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~~~~~  464 (616)
                                  .......+. .......++++| ++.++++-..++.|..++...+........ .......++++|++
T Consensus       215 ------------~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG  281 (430)
T 3tc9_A          215 ------------GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSG  281 (430)
T ss_dssp             ------------TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTS
T ss_pred             ------------ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCC
Confidence                        111111221 123456788999 677666666778999999987764322222 22457889999999


Q ss_pred             CEEEEE-eCCCcEEEEecCCce-e--eeeEEeccC------------CCeeeEE-EEEEc--------CCCCEEEEEeCC
Q psy3640         465 SKLATA-SSDQTANLWTVGGAV-E--LLQTFYGHS------------NEVSKVL-DIAFD--------YSGSKLATASSD  519 (616)
Q Consensus       465 ~~l~~~-~~dg~i~iwd~~~~~-~--~~~~~~~~~------------~~~~~i~-~~~~s--------~~~~~l~~~~~d  519 (616)
                      ++|+.+ ...+.|..++..... .  ....+.+..            .....-. .++..        +++.++++-..+
T Consensus       282 ~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n  361 (430)
T 3tc9_A          282 NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN  361 (430)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred             CEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence            955544 566788888775421 1  111121110            0011122 34553        446666666667


Q ss_pred             CcEEEEecCCceEEeEEeecc------------------ccCEEEEEEecC-CCEEEEEECCCcEEEecCC
Q psy3640         520 QTAKLWTVGGAVELLQTFYGH------------------SNEVSKVSFHPT-GKLVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       520 g~i~vwd~~~~~~~~~~~~~h------------------~~~v~~l~~spd-g~~l~s~s~dg~i~iwd~~  571 (616)
                      +.|+.++...  ... .+.+.                  -.....++++|+ +.++++-..+..|+.++++
T Consensus       362 ~~I~~i~~~G--~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          362 HCIRILTPQG--RVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             TEEEEECTTS--EEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             cEEEEECCCC--cEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            8888888543  222 22211                  124788999995 5555554456677776653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.45  E-value=0.00076  Score=65.25  Aligned_cols=222  Identities=9%  Similarity=-0.062  Sum_probs=136.4

Q ss_pred             CcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCC----CceEEEeeCCCCcEEEEEEeCCC
Q psy3640         209 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKS----GHEICTYRGHQNVVYAVAFSEPY  282 (616)
Q Consensus       209 g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~----~~~~~~~~~h~~~V~~l~~~~~~  282 (616)
                      ..|+..|+.+.+....+. .-..+..++|.+++. +. +-..++.|..+++..    ......+.........+++.+..
T Consensus        10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            468999998876655444 345678999998654 44 555678999999876    22222333333455788888444


Q ss_pred             CCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeCC--CcEEEEECCCCceeEEe-ecCCcCEE
Q psy3640         283 GDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSMD--HTARIFNTNSGQEMHTL-KAHTGPVI  356 (616)
Q Consensus       283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~-~~~~~~v~  356 (616)
                      ++..++-...+.|.+.+...........   .....+++.|.+..++.+...  +.|..+++.. .....+ ...-....
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPN  167 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCce
Confidence            5555665678899999987654333332   244567899977766655543  6788888764 333333 22344678


Q ss_pred             EEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEe--cCccceeEEEEccCCCEEEEEeCCCc
Q psy3640         357 SLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFSNSMIASSSLDGT  433 (616)
Q Consensus       357 ~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~  433 (616)
                      .+++++++..|..+. ..+.|..+|+..                ........  ........+++. .+.++++....+.
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg----------------~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~  230 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  230 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTS----------------CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCC----------------CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence            999998877766655 456898988752                11111111  112334566664 4555555556678


Q ss_pred             EEEEeCCCCeEEEEee
Q psy3640         434 AKLWDVRTMCCFYTLK  449 (616)
Q Consensus       434 i~iwd~~~~~~~~~~~  449 (616)
                      |..+|..+++....+.
T Consensus       231 V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          231 IFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEETTTCCCCEEEE
T ss_pred             EEEEeCCCCcceEEEe
Confidence            8888877766555443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.43  E-value=0.00013  Score=67.35  Aligned_cols=205  Identities=12%  Similarity=0.124  Sum_probs=135.5

Q ss_pred             EEecCccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         405 ILTGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNH-EDEVLDIAFDYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       405 ~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      .+.+-...+..++++|++..| ++...++.|...|.. ++.++.+.-. ......+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            344566789999999976654 557778899999998 8777777532 3568889999988776766677889999876


Q ss_pred             Ccee--eeeEEe---ccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc--eEEeEEee-------ccccCEEEEE
Q psy3640         483 GAVE--LLQTFY---GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA--VELLQTFY-------GHSNEVSKVS  548 (616)
Q Consensus       483 ~~~~--~~~~~~---~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~-------~h~~~v~~l~  548 (616)
                      ....  ......   ...........++++|.++.|+++.......+|.++..  ...+....       .+...+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432  122221   11223344678999999988888877766666665410  00111111       1234678999


Q ss_pred             EecCCC-EEEEEECCCcEEEecCCcCeeeeEeccCc---------ccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640         549 FHPTGK-LVLSGSQDTTCRLWSTESGECIQVLKAHE---------DDVFSCGFNYNGDTIITASKDNTCCIWRS  612 (616)
Q Consensus       549 ~spdg~-~l~s~s~dg~i~iwd~~~~~~~~~~~~h~---------~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~  612 (616)
                      ++|... +++....+..+.++|.. |+.+..+.-..         ..--.++|.++|++.++ ++-+.+++++-
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence            999754 55566667788899975 66665543221         24578999999985555 77776666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.41  E-value=0.0006  Score=67.00  Aligned_cols=231  Identities=6%  Similarity=-0.096  Sum_probs=140.4

Q ss_pred             EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee--
Q psy3640         233 YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR--  310 (616)
Q Consensus       233 ~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--  310 (616)
                      +|.+..++ .++..+....|+..++........+. ....+..++|.+.++..+++-...+.|..+++..........  
T Consensus        37 ~C~~~~~~-~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~  114 (349)
T 3v64_C           37 SCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG  114 (349)
T ss_dssp             CEEESSSC-CEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             cccccccC-ceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC
Confidence            34444442 34444455668888887665544444 344578999995555555555567889999988765443332  


Q ss_pred             -eceeeEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-C-CcEEEEecccccC
Q psy3640         311 -GHSAEVTFSPDQSTFC-SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-D-SSIVVWDIQYQFG  386 (616)
Q Consensus       311 -~~~~~v~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-d-g~i~iwd~~~~~~  386 (616)
                       .....+++.+.+..|+ +-...+.|.+.++........+.........++++|.+..+..... . +.|..+++..   
T Consensus       115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG---  191 (349)
T 3v64_C          115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG---  191 (349)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS---
T ss_pred             CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC---
Confidence             2335678888655554 4455678999998755433333334456789999996665555443 3 6777777641   


Q ss_pred             CcccccccccccCCcceEEE-ecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCC
Q psy3640         387 TRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSG  464 (616)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~  464 (616)
                                    .....+ ...-.....+++++++..|..+. ..+.|..+|+........+.........+++. .+
T Consensus       192 --------------~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~  256 (349)
T 3v64_C          192 --------------SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED  256 (349)
T ss_dssp             --------------CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT
T ss_pred             --------------CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC
Confidence                          111111 12234467899998766665554 45789999986543333333334567778883 44


Q ss_pred             CEEEEEeCCCcEEEEecCC
Q psy3640         465 SKLATASSDQTANLWTVGG  483 (616)
Q Consensus       465 ~~l~~~~~dg~i~iwd~~~  483 (616)
                      ..+++-...+.|..++..+
T Consensus       257 ~ly~td~~~~~V~~~~~~~  275 (349)
T 3v64_C          257 SLYWTDWHTKSINSANKFT  275 (349)
T ss_dssp             EEEEEETTTTEEEEEETTT
T ss_pred             EEEEecCCCCeEEEEEccC
Confidence            5555555667777777433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.40  E-value=9.5e-06  Score=87.62  Aligned_cols=272  Identities=8%  Similarity=0.021  Sum_probs=148.5

Q ss_pred             eEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCce--eEEeec-CCcCEEEEEEcCCCCEEEEEEC-CCcEEE
Q psy3640         315 EVTFSP-DQSTFCSCSMDH-----------TARIFNTNSGQE--MHTLKA-HTGPVISLQFSSDRNMLITGSF-DSSIVV  378 (616)
Q Consensus       315 ~v~~~~-~~~~l~~~~~dg-----------~i~i~d~~~~~~--~~~~~~-~~~~v~~l~~~~~~~~l~~g~~-dg~i~i  378 (616)
                      ..++.+ +++.++.|+.+.           .+.+||..+++-  +..+.. +.....++++..++.+++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456777 788888887543           578899987753  222221 2233345777889999999984 458999


Q ss_pred             EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CC-----CcEEEEeCCCCeEEEEe----
Q psy3640         379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LD-----GTAKLWDVRTMCCFYTL----  448 (616)
Q Consensus       379 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~----  448 (616)
                      ||.....              ...+..+.. ...-.+++..+++++++.|+ .+     ..+.+||..+.+-...-    
T Consensus       270 yd~~t~~--------------W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~  334 (656)
T 1k3i_A          270 YDSSSDS--------------WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKV  334 (656)
T ss_dssp             EEGGGTE--------------EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCS
T ss_pred             ecCcCCc--------------eeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccc
Confidence            9986321              111111111 11123445567899999988 34     46999999887643320    


Q ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCC---------cEEEEecCCceeeeeEEeccCC------CeeeEEEEEEc-CCCCE
Q psy3640         449 KNHEDEVLDIAFDYSGSKLATASSDQ---------TANLWTVGGAVELLQTFYGHSN------EVSKVLDIAFD-YSGSK  512 (616)
Q Consensus       449 ~~~~~~v~~l~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~s-~~~~~  512 (616)
                      ......-....+..++..++.++.+|         .+..||.....-.. .......      ....-.++.+. .+++.
T Consensus       335 ~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~av~~~~~~~~i  413 (656)
T 1k3i_A          335 NPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAMCGNAVMYDAVKGKI  413 (656)
T ss_dssp             GGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred             cccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCCCCceEeccCCCCeE
Confidence            00000000011223455555555444         45677776543211 1111100      00111233443 47778


Q ss_pred             EEEEeCCC-----------cEEEEecCCceEEeEEe--eccccC-EEEEEEecCCCEEEEEECC-----------CcEEE
Q psy3640         513 LATASSDQ-----------TAKLWTVGGAVELLQTF--YGHSNE-VSKVSFHPTGKLVLSGSQD-----------TTCRL  567 (616)
Q Consensus       513 l~~~~~dg-----------~i~vwd~~~~~~~~~~~--~~h~~~-v~~l~~spdg~~l~s~s~d-----------g~i~i  567 (616)
                      +++|+.++           .+.+||..+..-. ...  ..+... -.+++..|++++++.|+.+           ..+.+
T Consensus       414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~  492 (656)
T 1k3i_A          414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPNT-VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEI  492 (656)
T ss_dssp             EEECCBSSSSSSBCCCCEEEEECCSTTSCCEE-EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEE
T ss_pred             EEEeCCCCCCCCCcCCcceEEEcCCCCCCCee-EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEE
Confidence            88887543           5778887653211 111  112222 2345667899999999854           46899


Q ss_pred             ecCCcCeee--eEeccCcccEEEEEEeeCCCEEEEeeC
Q psy3640         568 WSTESGECI--QVLKAHEDDVFSCGFNYNGDTIITASK  603 (616)
Q Consensus       568 wd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~t~s~  603 (616)
                      ||..+++-.  ..+...........+.|+++.++.|+.
T Consensus       493 ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          493 YVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            998876532  222222222233446789999999985

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.39  E-value=0.00075  Score=62.30  Aligned_cols=201  Identities=13%  Similarity=0.109  Sum_probs=132.4

Q ss_pred             EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee----eceeeEEEcCCCCEEEEEeCCCcEEEEEC
Q psy3640         264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR----GHSAEVTFSPDQSTFCSCSMDHTARIFNT  339 (616)
Q Consensus       264 ~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~l~~~~~dg~i~i~d~  339 (616)
                      +.+.+-...+..++|.|..+.++++...++.|...|.. ++.+..+.    .....+++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            34556667899999994444455567778899999998 88777764    24566888888877677667788999987


Q ss_pred             CCCce---eEEee------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE----
Q psy3640         340 NSGQE---MHTLK------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL----  406 (616)
Q Consensus       340 ~~~~~---~~~~~------~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----  406 (616)
                      .....   +....      ........++|+|.++.|+++.......+|.++....             ...+...    
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~-------------~~~l~i~~~~~  165 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS-------------SNELHISKDKA  165 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC-------------SSCCEEEECHH
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc-------------CCceeeecchh
Confidence            65442   22221      1234568999999998888887766667777651100             0011111    


Q ss_pred             ---ecCccceeEEEEccCCC-EEEEEeCCCcEEEEeCCCCeEEEEeecCC---------CCEEEEEEcCCCCEEEEEeCC
Q psy3640         407 ---TGHSQEISNCLFNFSNS-MIASSSLDGTAKLWDVRTMCCFYTLKNHE---------DEVLDIAFDYSGSKLATASSD  473 (616)
Q Consensus       407 ---~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~l~~~~~d  473 (616)
                         ..+...+.+++++|... +++....++.+..+|.. ++.+..+.-..         .....|+|+++|+..++ ++.
T Consensus       166 ~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~  243 (255)
T 3qqz_A          166 LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEP  243 (255)
T ss_dssp             HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETT
T ss_pred             hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCC
Confidence               11234578899998755 45555566778889965 44555554332         36789999999975554 666


Q ss_pred             CcEEEEe
Q psy3640         474 QTANLWT  480 (616)
Q Consensus       474 g~i~iwd  480 (616)
                      +.++.+.
T Consensus       244 n~~y~f~  250 (255)
T 3qqz_A          244 NRFYRFT  250 (255)
T ss_dssp             TEEEEEE
T ss_pred             ceEEEEE
Confidence            6666554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.38  E-value=0.0024  Score=63.96  Aligned_cols=241  Identities=8%  Similarity=-0.070  Sum_probs=149.8

Q ss_pred             CEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCC----ceEEEeeCCCCcE
Q psy3640         200 TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSG----HEICTYRGHQNVV  273 (616)
Q Consensus       200 ~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~----~~~~~~~~h~~~V  273 (616)
                      .+|+.+.. ..|+..++........+ ..-..+..++|.+.+. +. +-...+.|+.+++...    .....+.......
T Consensus        84 ~~ll~~~~-~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           84 AYLFFTNR-HEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             CEEEEEET-TEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             ceeEEecc-ceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            34444443 57888888876554443 3456788999998655 43 5556788999998762    2333444345678


Q ss_pred             EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee---ceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEe
Q psy3640         274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG---HSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTL  348 (616)
Q Consensus       274 ~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~  348 (616)
                      ..+++.+..+++.++-...+.|.+.++........+..   ....+++.|.+..|+....  .+.|...++.........
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            89999844566666666778999999876654444332   2456799997777766553  378888888754433333


Q ss_pred             ecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEec--CccceeEEEEccCCCEE
Q psy3640         349 KAHTGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG--HSQEISNCLFNFSNSMI  425 (616)
Q Consensus       349 ~~~~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l  425 (616)
                      ...-.....|++++++..|..+.. .+.|..+|+..                .........  .......+++ ..+.++
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG----------------~~~~~~~~~~~~l~~P~gl~v-~~~~ly  304 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAV-FEDKVF  304 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----------------CCCEEEEECSSTTSSEEEEEE-ETTEEE
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC----------------CccEEEEeCCCCCCCCEEEEE-eCCEEE
Confidence            333356789999988777766654 56788888752                111112221  2233345555 344555


Q ss_pred             EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEE
Q psy3640         426 ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA  459 (616)
Q Consensus       426 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~  459 (616)
                      ++....+.|..+|..+++.+..+........+++
T Consensus       305 wtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          305 WTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             EEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             EecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            5666667888888777776666654444444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.38  E-value=0.00087  Score=66.87  Aligned_cols=225  Identities=6%  Similarity=-0.104  Sum_probs=140.8

Q ss_pred             CEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEE
Q psy3640         242 GCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTF  318 (616)
Q Consensus       242 ~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~  318 (616)
                      .++..+....|+..++.......... ....+..++|.+.++.++++-...+.|..++.........+.   .....+++
T Consensus        88 ~~l~~~~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glav  166 (386)
T 3v65_B           88 PVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAV  166 (386)
T ss_dssp             CEEEEECBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEE
T ss_pred             ceeEeecCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEE
Confidence            35555556788999988776554444 345678999995555555565667899999988765433332   23355788


Q ss_pred             cCCCCEEE-EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC-C-CcEEEEecccccCCcccccccc
Q psy3640         319 SPDQSTFC-SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF-D-SSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       319 ~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-d-g~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      .+.+..|+ +-...+.|.+.++........+.........++++|.+..|+.... . +.|..+++.             
T Consensus       167 d~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-------------  233 (386)
T 3v65_B          167 DWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-------------  233 (386)
T ss_dssp             ETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-------------
T ss_pred             EeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-------------
Confidence            88665554 4455678888888754433333333456789999987666665544 3 567777764             


Q ss_pred             cccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640         396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ  474 (616)
Q Consensus       396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg  474 (616)
                         ...........-.....+++++++..|..+. ..+.|..+|+........+.........+++. .+..+++....+
T Consensus       234 ---G~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~  309 (386)
T 3v65_B          234 ---GSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTK  309 (386)
T ss_dssp             ---SCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTT
T ss_pred             ---CCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCC
Confidence               2222222223334567899998766665554 45789999986543333333334567788883 445556666677


Q ss_pred             cEEEEecCCc
Q psy3640         475 TANLWTVGGA  484 (616)
Q Consensus       475 ~i~iwd~~~~  484 (616)
                      .|..++..++
T Consensus       310 ~V~~~~~~~G  319 (386)
T 3v65_B          310 SINSANKFTG  319 (386)
T ss_dssp             EEEEEETTTC
T ss_pred             eEEEEECCCC
Confidence            7888874443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.34  E-value=0.0091  Score=67.91  Aligned_cols=398  Identities=11%  Similarity=0.093  Sum_probs=210.7

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEE-eccCCcEEEEEEcCCC------C-EEEEEC-CCcEEEEeCC
Q psy3640         188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVYAVAFSEPY------G-CLTGSY-DRTCKLWDIK  258 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~-~~h~~~I~~l~fs~~~------~-lls~s~-d~~I~iwd~~  258 (616)
                      ..|...+.+.  .+++.++ ++.+.++++.+++..... ..-...|.|+++.+..      . ++.|.. |++|+|+++.
T Consensus       514 ~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~  590 (1158)
T 3ei3_A          514 KNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP  590 (1158)
T ss_dssp             CCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence            3566666553  4566665 677888887765432211 2245689999998532      3 447775 9999999999


Q ss_pred             CCceEEEeeC-CCCcEEEEEEeC-CCCCEEEEEECCCeEEEEeC--CCcceeEE---eeece-eeE-EEcCCCCEEEEEe
Q psy3640         259 SGHEICTYRG-HQNVVYAVAFSE-PYGDKILTGSFDKTLKLWAS--AKEECIQT---YRGHS-AEV-TFSPDQSTFCSCS  329 (616)
Q Consensus       259 ~~~~~~~~~~-h~~~V~~l~~~~-~~~~~l~s~s~dg~i~iwd~--~~~~~~~~---~~~~~-~~v-~~~~~~~~l~~~~  329 (616)
                      +.+.+....- ......++.+.. ....+|..|-.||.+.-+.+  .+++....   +-|.. ..+ .+...+..-+.+.
T Consensus       591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~  670 (1158)
T 3ei3_A          591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC  670 (1158)
T ss_dssp             TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence            8776654332 123444554431 23457888999998865544  44443321   11211 111 2333444444444


Q ss_pred             CCCcEEEEECCCCceeEEeecCCcCEE-EEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE
Q psy3640         330 MDHTARIFNTNSGQEMHTLKAHTGPVI-SLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL  406 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (616)
                      .+....+|.-+ ++.... .....++. ...|+..  .+-++..+ ++.++|..+....              .-....+
T Consensus       671 s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~--------------~~~~~~i  733 (1158)
T 3ei3_A          671 SDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQ--------------KLHIRTV  733 (1158)
T ss_dssp             SSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSS--------------SEEEEEE
T ss_pred             CCCCEEEEEcC-CceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccC--------------CeeEEEE
Confidence            45555555543 332222 11122332 3345432  23344333 5568888775221              0011111


Q ss_pred             ecCccceeEEEEccCCCEEEEEeC-------------------------------------------------CCcEEEE
Q psy3640         407 TGHSQEISNCLFNFSNSMIASSSL-------------------------------------------------DGTAKLW  437 (616)
Q Consensus       407 ~~~~~~i~~~~~~~~~~~l~~~~~-------------------------------------------------dg~i~iw  437 (616)
                       .-...+..++++|..+.++.+..                                                 -+.+++.
T Consensus       734 -pL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~li  812 (1158)
T 3ei3_A          734 -PLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLII  812 (1158)
T ss_dssp             -ECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEE
T ss_pred             -eCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEE
Confidence             11223344444444433322221                                                 1347788


Q ss_pred             eCCCCeEEEEeecCC-CCEEEEE---EcCC-CCEEEEEe----------CCCcEEEEecCCceeeeeEEeccCCCeeeEE
Q psy3640         438 DVRTMCCFYTLKNHE-DEVLDIA---FDYS-GSKLATAS----------SDQTANLWTVGGAVELLQTFYGHSNEVSKVL  502 (616)
Q Consensus       438 d~~~~~~~~~~~~~~-~~v~~l~---~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~  502 (616)
                      |..+.+.+..+.-.. ..+.+++   |..+ ..++++|+          ..|.|.+|++.+............+   .+.
T Consensus       813 dp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g---~v~  889 (1158)
T 3ei3_A          813 DQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG---AVY  889 (1158)
T ss_dssp             ETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS---CEE
T ss_pred             eCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC---cCE
Confidence            888777766655333 3355554   3222 46888876          3578999998643211111111222   344


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec--CCcCeeeeEec
Q psy3640         503 DIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS--TESGECIQVLK  580 (616)
Q Consensus       503 ~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd--~~~~~~~~~~~  580 (616)
                      +++-- +| +|++| ..+.+++|++.....+..... +-..|..+.....+++++.|..-..|.++.  ...++....-+
T Consensus       890 al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~  965 (1158)
T 3ei3_A          890 SMVEF-NG-KLLAS-INSTVRLYEWTTEKELRTECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR  965 (1158)
T ss_dssp             EEEEE-TT-EEEEE-ETTEEEEEEECTTSCEEEEEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred             EEeee-CC-EEEEE-cCCEEEEEECCCCceEEEEee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence            44322 34 44443 357899999976433321111 112233334444577999998877777754  44444433222


Q ss_pred             -cCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         581 -AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       581 -~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                       .+...++++.|-.+ ..++.+..+|.+.+.+...
T Consensus       966 D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          966 DFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             CCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             ecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence             24556889988755 4778899999999987654

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.33  E-value=0.00034  Score=70.88  Aligned_cols=238  Identities=10%  Similarity=0.079  Sum_probs=140.2

Q ss_pred             eeeEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEeccccc
Q psy3640         313 SAEVTFSPD--QSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS-----SIVVWDIQYQF  385 (616)
Q Consensus       313 ~~~v~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg-----~i~iwd~~~~~  385 (616)
                      ...++++|+  ...|+.+...+.|+.+|..+++..... ........++++++|+ |+++...+     .+...+...  
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~--  216 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS--  216 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG--
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC--
Confidence            456789984  555666655588999999877655443 3455679999999999 55544322     122222211  


Q ss_pred             CCcccccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCCcEEEEeCCCCeEEEEe-ec-CCCCEEEEEEcC
Q psy3640         386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDGTAKLWDVRTMCCFYTL-KN-HEDEVLDIAFDY  462 (616)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-~~~~v~~l~~~~  462 (616)
                                   .......+. .......+++++ ++.+.++-..++.|+.+|..++.....+ .. .......++++|
T Consensus       217 -------------~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp  282 (433)
T 4hw6_A          217 -------------GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP  282 (433)
T ss_dssp             -------------TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT
T ss_pred             -------------Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC
Confidence                         111001111 223446678888 6666666667788999999877652222 21 122335799999


Q ss_pred             CCCEEEEE-eCCCcEEEEecCCceee---eeEEecc------------CCCeeeEEEEEE---------cCCCCEEEEEe
Q psy3640         463 SGSKLATA-SSDQTANLWTVGGAVEL---LQTFYGH------------SNEVSKVLDIAF---------DYSGSKLATAS  517 (616)
Q Consensus       463 ~~~~l~~~-~~dg~i~iwd~~~~~~~---~~~~~~~------------~~~~~~i~~~~~---------s~~~~~l~~~~  517 (616)
                      +++.|+.+ ...+.|..++.......   ...+.+.            ......-..+++         .+++.++++-.
T Consensus       283 dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~  362 (433)
T 4hw6_A          283 TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR  362 (433)
T ss_dssp             TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET
T ss_pred             CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC
Confidence            99955555 45678988886532110   1111111            011223456888         77777777777


Q ss_pred             CCCcEEEEecCCceEEeEEeecc------------------ccCEEEEEEe-cCCCEEEEEECCCcEEEecCC
Q psy3640         518 SDQTAKLWTVGGAVELLQTFYGH------------------SNEVSKVSFH-PTGKLVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       518 ~dg~i~vwd~~~~~~~~~~~~~h------------------~~~v~~l~~s-pdg~~l~s~s~dg~i~iwd~~  571 (616)
                      .++.|+.++...  .. ..+.+.                  -.....|+++ ++|.++++-..++.|+.++++
T Consensus       363 ~n~~I~~~~~~G--~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          363 DSHTVRVLTPEG--RV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TTTEEEEECTTS--EE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEECCCC--CE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            788999998643  22 222221                  1236788888 556555555556677776653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.32  E-value=0.0078  Score=66.04  Aligned_cols=387  Identities=10%  Similarity=0.020  Sum_probs=214.2

Q ss_pred             CcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe----ccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCce
Q psy3640         187 LLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE  262 (616)
Q Consensus       187 ~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~----~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~  262 (616)
                      ...|+++.-+++|. |-.|+.+| +..||-.+   ...+.    .....|.++....++.+..++.+| +..+|..+.+.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f   94 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRY   94 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEE
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEE
Confidence            45799999999874 45566777 55676322   22221    123568898888888777777655 78999887654


Q ss_pred             EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee-------eceeeEEEcCCCCEEEEEeCCCcEE
Q psy3640         263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-------GHSAEVTFSPDQSTFCSCSMDHTAR  335 (616)
Q Consensus       263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~l~~~~~dg~i~  335 (616)
                      ..........|.++...   ...+..++.+ .+..+|..+++......       .....+....++... .++.+| +.
T Consensus        95 ~~~~~~~~~~i~~i~~~---~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~G-l~  168 (758)
T 3ott_A           95 EQPETDFPTDVRTMALQ---GDTLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYNG-LC  168 (758)
T ss_dssp             CCCSCCCCSCEEEEEEE---TTEEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEE-EEETTE-EE
T ss_pred             ECcccCCCceEEEEEec---CCcEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCCC-Hh
Confidence            32111123457777543   3456666665 67888887665432201       111223444555544 455544 77


Q ss_pred             EEECCCCceeEEeec-----CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc
Q psy3640         336 IFNTNSGQEMHTLKA-----HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS  410 (616)
Q Consensus       336 i~d~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (616)
                      .++..+++.......     ....|.++...+++..|..|+. +-+..+|...                ...........
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~----------------~~~~~~~~l~~  231 (758)
T 3ott_A          169 RYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST----------------GQIKQTEAFHN  231 (758)
T ss_dssp             EEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT----------------TEEEEEEEEEE
T ss_pred             hCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC----------------CeEEeccCCCC
Confidence            888776654322111     1224888888877776666664 4577777642                11111111123


Q ss_pred             cceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-------cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-------NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG  483 (616)
Q Consensus       411 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  483 (616)
                      ..|.++....++.+.+ |+.+ -+.+++..+........       -....|.++..+.+|.+ ..|+..| +.++....
T Consensus       232 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~  307 (758)
T 3ott_A          232 NSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS  307 (758)
T ss_dssp             EEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC
T ss_pred             CeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC
Confidence            4577777776776555 4444 58888887654322211       12346899998887764 4455556 55544322


Q ss_pred             ceeeeeEEe-ccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-EEeEEee-------ccccCEEEEEEecCCC
Q psy3640         484 AVELLQTFY-GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV-ELLQTFY-------GHSNEVSKVSFHPTGK  554 (616)
Q Consensus       484 ~~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-------~h~~~v~~l~~spdg~  554 (616)
                      ......... ........|.++..+.+|.+.+. +.+ .+..++..++. .....+.       -....|.++.-.++|+
T Consensus       308 ~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~  385 (758)
T 3ott_A          308 ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ  385 (758)
T ss_dssp             -CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC
T ss_pred             ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC
Confidence            111110000 01112245778888887776554 444 46666654311 1111111       0123588888877776


Q ss_pred             EEEEEECCCcEEEecCCcCeeeeEe--cc----CcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         555 LVLSGSQDTTCRLWSTESGECIQVL--KA----HEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       555 ~l~s~s~dg~i~iwd~~~~~~~~~~--~~----h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      +- .|+ ++-+..|+..+++.....  ..    ....|.++....+|. |..|+..+-+.+++
T Consensus       386 lW-igt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~  445 (758)
T 3ott_A          386 LW-IAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVD  445 (758)
T ss_dssp             EE-EEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEE
T ss_pred             EE-EEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEc
Confidence            44 445 456999998887654321  11    224588887666655 44466555566665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=0.00016  Score=73.35  Aligned_cols=238  Identities=7%  Similarity=-0.006  Sum_probs=137.1

Q ss_pred             CEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC-
Q psy3640         354 PVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD-  431 (616)
Q Consensus       354 ~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-  431 (616)
                      ....++++| ++..|.++...+.|+.+|+.                 ...+..+.........++++++++.|+++... 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~-----------------~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~  200 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFE-----------------KEYVSTVYSGLSKVRTICWTHEADSMIITNDQN  200 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETT-----------------TTEEEEEECCCSCEEEEEECTTSSEEEEEECCS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECC-----------------CCEEEEEecCCCCcceEEEeCCCCEEEEEeCCC
Confidence            457889998 45566666655788888874                 22233333345567889999999966666542 


Q ss_pred             C----cEEEEeCCCC-eEEEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEE
Q psy3640         432 G----TAKLWDVRTM-CCFYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIA  505 (616)
Q Consensus       432 g----~i~iwd~~~~-~~~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~  505 (616)
                      +    .+..++.... .....+. .......++++| ++.++++-..++.|..++....... .......  ...-..++
T Consensus       201 ~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~--~~~P~gia  276 (430)
T 3tc9_A          201 NNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQD--SGWEFHIQ  276 (430)
T ss_dssp             CTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSS--SSCCEEEE
T ss_pred             CcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCC--CCcceeEE
Confidence            2    2333443221 1112222 123456788999 6776666667789999998765331 1111111  12345789


Q ss_pred             EcCCCCEEEEE-eCCCcEEEEecCCc-eEE--eEEeecc---------------ccCEE-EEEEe--------cCCCEEE
Q psy3640         506 FDYSGSKLATA-SSDQTAKLWTVGGA-VEL--LQTFYGH---------------SNEVS-KVSFH--------PTGKLVL  557 (616)
Q Consensus       506 ~s~~~~~l~~~-~~dg~i~vwd~~~~-~~~--~~~~~~h---------------~~~v~-~l~~s--------pdg~~l~  557 (616)
                      ++|++++|+.+ ...+.|..++.... ...  ...+.+.               -.... .++..        ++|.+.+
T Consensus       277 ~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyv  356 (430)
T 3tc9_A          277 FHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYF  356 (430)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEE
T ss_pred             EcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEE
Confidence            99999955554 46788999887532 111  1111111               01123 45553        3455555


Q ss_pred             EEECCCcEEEecCCcCeeeeEecc----C-------------cccEEEEEEeeC-CCEEEEeeCCCcEEEcccC
Q psy3640         558 SGSQDTTCRLWSTESGECIQVLKA----H-------------EDDVFSCGFNYN-GDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       558 s~s~dg~i~iwd~~~~~~~~~~~~----h-------------~~~V~~l~~s~~-~~~l~t~s~Dg~i~vW~~~  613 (616)
                      +-...+.|+.++ .+|......-.    .             -.....++++|+ +.++++-...+.|+.++++
T Consensus       357 aD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          357 CDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            555667899888 45654332211    0             124788999995 5555555556778777653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.28  E-value=0.0003  Score=71.30  Aligned_cols=237  Identities=8%  Similarity=0.023  Sum_probs=137.7

Q ss_pred             CEEEEEEcCC--CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC
Q psy3640         354 PVISLQFSSD--RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD  431 (616)
Q Consensus       354 ~v~~l~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  431 (616)
                      ....++|+|+  ...|+.+...+.|+.+|..                . ..+..+.........++++++++ |+.+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~----------------~-g~v~~~~~~~~~P~giavd~dG~-lyVad~~  201 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFV----------------N-QYVDIKTTNIGQCADVNFTLNGD-MVVVDDQ  201 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETT----------------T-TEEEEECCCCSCEEEEEECTTCC-EEEEECC
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECC----------------C-CEEEEeecCCCCccEEEECCCCC-EEEEcCC
Confidence            3468999984  4455555444889999874                2 23333334455678999999999 4444432


Q ss_pred             C-----cEEEEeCCCCeE-EEEeecCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEE
Q psy3640         432 G-----TAKLWDVRTMCC-FYTLKNHEDEVLDIAFDY-SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI  504 (616)
Q Consensus       432 g-----~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~  504 (616)
                      +     .+...+...+.. ...+. .......++++| ++.+.++-..++.|+.++..++............  ..-..+
T Consensus       202 ~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~--~~~~~i  278 (433)
T 4hw6_A          202 SSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK--GSNFHI  278 (433)
T ss_dssp             SCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC--SSCEEE
T ss_pred             CCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC--CCcccE
Confidence            1     233333222111 01111 234456788999 6666666667788999998744321122211111  112368


Q ss_pred             EEcCCCCEEEEEe-CCCcEEEEecCCc-eE--EeEEeecc---------------ccCEEEEEE---------ecCCCEE
Q psy3640         505 AFDYSGSKLATAS-SDQTAKLWTVGGA-VE--LLQTFYGH---------------SNEVSKVSF---------HPTGKLV  556 (616)
Q Consensus       505 ~~s~~~~~l~~~~-~dg~i~vwd~~~~-~~--~~~~~~~h---------------~~~v~~l~~---------spdg~~l  556 (616)
                      +++|++++|+.+. ..+.|..++.... ..  ....+.+.               -.....+++         .++|.+.
T Consensus       279 a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~ly  358 (433)
T 4hw6_A          279 VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFY  358 (433)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEE
T ss_pred             EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEE
Confidence            9999999665554 5688999886521 11  01111111               123667899         6777777


Q ss_pred             EEEECCCcEEEecCCcCeeeeEeccC------------------cccEEEEEEe-eCCCEEEEeeCCCcEEEcccC
Q psy3640         557 LSGSQDTTCRLWSTESGECIQVLKAH------------------EDDVFSCGFN-YNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       557 ~s~s~dg~i~iwd~~~~~~~~~~~~h------------------~~~V~~l~~s-~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      ++-...+.|+.++. +|.... +.+.                  -.....++++ ++|.++++=...+.|+..+++
T Consensus       359 vaD~~n~~I~~~~~-~G~v~t-~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          359 FCDRDSHTVRVLTP-EGRVTT-YAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEETTTTEEEEECT-TSEEEE-EECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEECCCCEEEEECC-CCCEEE-EEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            66667788999985 564432 2211                  1236789999 566666665566788877654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.27  E-value=5.1e-05  Score=83.13  Aligned_cols=188  Identities=11%  Similarity=0.097  Sum_probs=110.4

Q ss_pred             ceEEEEEC-CCCCEEEEEEC-CC----cEEEEECCCC-cEEE-EEeccCCcEEEEEEcCCCC-EEEEECC-----CcEEE
Q psy3640         189 PLTNITFD-KFGTRCLTGSY-DR----TCKLWDIKSG-HEIC-TYRGHQNVVYAVAFSEPYG-CLTGSYD-----RTCKL  254 (616)
Q Consensus       189 ~i~~v~~s-~~g~~lasgs~-dg----~i~iwd~~~~-~~~~-~~~~h~~~I~~l~fs~~~~-lls~s~d-----~~I~i  254 (616)
                      .+...+|| |||++||-+.. +|    +|+++|+.++ +.+. .+..   ....++|+||++ ++....+     ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57789999 99999886543 33    4999999998 6321 1111   134688999997 4444433     36888


Q ss_pred             EeCCCCce--EEEee-CCCCcEEEEEEeCCCCCEEEEEEC---CCeEEEEeCCCcc-ee--EEeeeceeeEEEcCC---C
Q psy3640         255 WDIKSGHE--ICTYR-GHQNVVYAVAFSEPYGDKILTGSF---DKTLKLWASAKEE-CI--QTYRGHSAEVTFSPD---Q  322 (616)
Q Consensus       255 wd~~~~~~--~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~---dg~i~iwd~~~~~-~~--~~~~~~~~~v~~~~~---~  322 (616)
                      +++.++..  ...+. ........+.|+ +++++|+..+.   ...|.++|+.++. ..  ..+........++++   +
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence            89987742  23333 233456788999 88988887663   3468888988762 22  333222222233333   6


Q ss_pred             CEEEEEeCC-----CcEEEEECCCCceeEE-eecCCc--CEEEEEEcCCCCEEEEEECCCcEEEEec
Q psy3640         323 STFCSCSMD-----HTARIFNTNSGQEMHT-LKAHTG--PVISLQFSSDRNMLITGSFDSSIVVWDI  381 (616)
Q Consensus       323 ~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~--~v~~l~~~~~~~~l~~g~~dg~i~iwd~  381 (616)
                      ..|+..+..     ..|..+|+.++..... +..+..  .+..+.+. .+.++++...++..++|-+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~  396 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTM  396 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEE
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            665554433     2577778765322222 222333  34555554 3345566667776555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.26  E-value=0.0024  Score=62.10  Aligned_cols=268  Identities=12%  Similarity=0.054  Sum_probs=142.8

Q ss_pred             CCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-------eeceeeEEEcCCCCEEEEEeCCCcEEEEECCCC
Q psy3640         270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-------RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG  342 (616)
Q Consensus       270 ~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~  342 (616)
                      ...+.++.|. +.+..++ ++.+|.|. ...+.++.-...       ..+...+.+.+ +. +++++..|.|.. ....|
T Consensus        35 ~~~~~~v~~~-~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFI-DRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG  108 (327)
T ss_dssp             SSCEEEEEES-SSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred             CCcEEEEEEC-CCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence            4578899987 4455666 55667653 333333322211       12334567765 33 444455664433 33334


Q ss_pred             ceeEEee---cCCcCEEEEEEcCCCCEEEEEECCCcEEE-EecccccCCcccccccccccCCcce-EEEecCccceeEEE
Q psy3640         343 QEMHTLK---AHTGPVISLQFSSDRNMLITGSFDSSIVV-WDIQYQFGTRNAYAESTYRASHKPI-HILTGHSQEISNCL  417 (616)
Q Consensus       343 ~~~~~~~---~~~~~v~~l~~~~~~~~l~~g~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~  417 (616)
                      +.-....   .+...+..+.+.+++..++++ .+|.|.. .|-                  ...- .........+..+.
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg------------------G~tW~~~~~~~~~~~~~~~  169 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS------------------GKNWQALVQEAIGVMRNLN  169 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST------------------TSSEEEEECSCCCCEEEEE
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC------------------CCCCEEeecCCCcceEEEE
Confidence            4333332   233557788877666655554 4565432 221                  1111 11223345678888


Q ss_pred             EccCCCEEEEEeCCCcEEEEeC--CCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc-
Q psy3640         418 FNFSNSMIASSSLDGTAKLWDV--RTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH-  494 (616)
Q Consensus       418 ~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  494 (616)
                      +.+++.+++++...+..+-.|-  .+.+.+.  ......+..+++.+++..+ .++.+|.+.+.+...+ ......... 
T Consensus       170 ~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G-~tW~~~~~~~  245 (327)
T 2xbg_A          170 RSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNS-ENWGELLSPL  245 (327)
T ss_dssp             ECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEE-EEECCCBCTT
T ss_pred             EcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCC-CeeEeccCCc
Confidence            9998888776654443444443  3344432  2345678999999988665 4556787776642222 222211111 


Q ss_pred             CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee---ccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640         495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY---GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       495 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~  570 (616)
                      ......+..+.+.+++..++++. ++.+ .+..+.+ .......   .+...+.++.|.+++. +++++.+|.|.-++-
T Consensus       246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            11113477888988877776654 5655 3333332 2222222   2345678898876654 666667887776653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.23  E-value=0.012  Score=64.51  Aligned_cols=401  Identities=9%  Similarity=-0.007  Sum_probs=217.3

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640         188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR  267 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~  267 (616)
                      ..|.++...++| .|-.|+.+| +..||..+.+...........|.++.. .++.+..++.+ .+..+|..+++......
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~~~~~~  138 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKLTSFDT  138 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCEEEECH
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeEEEecc
Confidence            468888888776 566666665 789998776432211112335777754 46666677766 68889988766433211


Q ss_pred             ----CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-ee-------ceeeEEEcCCCCEEEEEeCCCcEE
Q psy3640         268 ----GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-RG-------HSAEVTFSPDQSTFCSCSMDHTAR  335 (616)
Q Consensus       268 ----~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-------~~~~v~~~~~~~~l~~~~~dg~i~  335 (616)
                          .....|.++... .++...+ ++.. -+..++..+++..... ..       ....+...+++..|..|+. +-+.
T Consensus       139 ~~~~l~~~~i~~i~~d-~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~  214 (758)
T 3ott_A          139 RRNGLPNNTIYSIIRT-KDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF  214 (758)
T ss_dssp             HHHCCSCSCEEEEEEC-TTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred             CCCCcCCCeEEEEEEc-CCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence                123568888776 5555554 5554 5777887766533211 11       1223445556666666664 4588


Q ss_pred             EEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640         336 IFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN  415 (616)
Q Consensus       336 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  415 (616)
                      .+|..+++...........|.++...++|.+. .|+. +-+.+++.....-.  .....    ...+   ..-....|.+
T Consensus       215 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~--~~~~~----~~~~---~~l~~~~i~~  283 (758)
T 3ott_A          215 QYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQ--HIIHD----SRNI---QSLTNNIIWN  283 (758)
T ss_dssp             EEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCE--EECCC----TTCT---TSCSCSCEEE
T ss_pred             EEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEE--EEEcC----CCCc---CcCCcCeEEE
Confidence            88987765432222234468888888777644 4554 45777776421100  00000    0000   0012345777


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce-eeee
Q psy3640         416 CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-----NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV-ELLQ  489 (616)
Q Consensus       416 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~  489 (616)
                      +....++.+- .|+..| +.++.....-......     .....|.++..+.+|.+.+ |+.+| +..++..+.. ....
T Consensus       284 i~~D~~g~lW-iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~  359 (758)
T 3ott_A          284 IFADQEHNIW-LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAI  359 (758)
T ss_dssp             EEECTTCCEE-EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCE
T ss_pred             EEEcCCCCEE-EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeE
Confidence            7777666544 455556 5544432211111111     1234688998888876554 44554 6666654321 1111


Q ss_pred             EEec----cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeec-----cccCEEEEEEecCCCEEEEEE
Q psy3640         490 TFYG----HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYG-----HSNEVSKVSFHPTGKLVLSGS  560 (616)
Q Consensus       490 ~~~~----~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----h~~~v~~l~~spdg~~l~s~s  560 (616)
                      .+..    .......|.++.-+.+|.+.+ |+ ++.+..|+..+..-.......     ....|.++...++|+ |-.|+
T Consensus       360 ~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT  436 (758)
T 3ott_A          360 WYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWIST  436 (758)
T ss_dssp             EECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEE
T ss_pred             EeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEE
Confidence            1111    111224577888888877554 44 457899998764221111111     124578888777765 55566


Q ss_pred             CCCcEEEecCCcC-----eee---eEec---c-CcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         561 QDTTCRLWSTESG-----ECI---QVLK---A-HEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       561 ~dg~i~iwd~~~~-----~~~---~~~~---~-h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      ..+-+.++|..+.     ...   ..+.   + ....|.++...++|.+.+.++..+-+..++..+
T Consensus       437 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~  502 (758)
T 3ott_A          437 CLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRT  502 (758)
T ss_dssp             SSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTT
T ss_pred             CCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCC
Confidence            6666888886531     111   1111   1 123588888888888776333344466777654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.20  E-value=0.0012  Score=63.89  Aligned_cols=225  Identities=8%  Similarity=-0.040  Sum_probs=135.3

Q ss_pred             CCcEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCCce-EEEeeCCCCcEEEEEEeCCCC
Q psy3640         208 DRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYG  283 (616)
Q Consensus       208 dg~i~iwd~~~~~-~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~~~-~~~~~~h~~~V~~l~~~~~~~  283 (616)
                      ...|+..++.... ....+...-..+.+++|.+.+. +. +-...+.|..+++..+.. ...+...-.....+++.+..+
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g   91 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   91 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred             cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence            3578899987763 1112222224567899998544 43 556778999999877642 122222334566788884455


Q ss_pred             CEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecCCcCEEEE
Q psy3640         284 DKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTLKAHTGPVISL  358 (616)
Q Consensus       284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l  358 (616)
                      ..+++-...+.|.++++..........   .....+++.|.+..++....  .+.|...++............-.....+
T Consensus        92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence            666666667899999987654332221   23456789987777666653  5788888876433222222233456899


Q ss_pred             EEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy3640         359 QFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW  437 (616)
Q Consensus       359 ~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  437 (616)
                      ++++++..|..+. ..+.|..+|+..                ................+++. .+.++.+-...+.|..+
T Consensus       172 avd~~~~~lY~aD~~~~~I~~~d~dG----------------~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~  234 (318)
T 3sov_A          172 TLDYEEQKLYWADAKLNFIHKSNLDG----------------TNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILAC  234 (318)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTS----------------CSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEeccCCEEEEEECCCCEEEEEcCCC----------------CceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEE
Confidence            9999777666654 467888888752                11111222223344556664 34455555566788888


Q ss_pred             eCCCCeEEEEee
Q psy3640         438 DVRTMCCFYTLK  449 (616)
Q Consensus       438 d~~~~~~~~~~~  449 (616)
                      +..+++....+.
T Consensus       235 ~~~~G~~~~~i~  246 (318)
T 3sov_A          235 NKYTGEGLREIH  246 (318)
T ss_dssp             ETTTCCSCEEEE
T ss_pred             ECCCCCceEEEe
Confidence            887776555544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.18  E-value=0.0018  Score=62.59  Aligned_cols=225  Identities=9%  Similarity=-0.026  Sum_probs=136.6

Q ss_pred             EEEEECCCcEEEEeCCCCc-eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE-Eee---eceeeEE
Q psy3640         243 CLTGSYDRTCKLWDIKSGH-EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TYR---GHSAEVT  317 (616)
Q Consensus       243 lls~s~d~~I~iwd~~~~~-~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~---~~~~~v~  317 (616)
                      +|.-+....|+..++.... ....+........+++|.+.++..+.+-...+.|..++...+.... .+.   .....++
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            4444556788999988764 1111211223567899985455666666667889999987764221 111   2345678


Q ss_pred             EcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEecccccCCccccccc
Q psy3640         318 FSPDQSTF-CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF--DSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       318 ~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                      +.+.+..| ++-...+.|.++++..................++++|.+..++....  .+.|...++.            
T Consensus        86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d------------  153 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD------------  153 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT------------
T ss_pred             EEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC------------
Confidence            88755555 44456688999998754433333334456789999987666666553  4677777764            


Q ss_pred             ccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCC
Q psy3640         395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD  473 (616)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~d  473 (616)
                          ...........-.....+++++++..|..+. ..+.|..+|+..................+++.. +..+++-...
T Consensus       154 ----G~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~  228 (318)
T 3sov_A          154 ----GSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWST  228 (318)
T ss_dssp             ----SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTT
T ss_pred             ----CCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCC
Confidence                1111112222234457899998766665554 457899999864332222233345667788763 3455555566


Q ss_pred             CcEEEEecCCc
Q psy3640         474 QTANLWTVGGA  484 (616)
Q Consensus       474 g~i~iwd~~~~  484 (616)
                      +.|..++..++
T Consensus       229 ~~V~~~~~~~G  239 (318)
T 3sov_A          229 HSILACNKYTG  239 (318)
T ss_dssp             TEEEEEETTTC
T ss_pred             CeEEEEECCCC
Confidence            78888887554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.13  E-value=0.0076  Score=58.47  Aligned_cols=270  Identities=12%  Similarity=0.060  Sum_probs=142.3

Q ss_pred             CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee----CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc
Q psy3640         229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR----GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE  304 (616)
Q Consensus       229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~----~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~  304 (616)
                      ...+.++.|.+++..++++.++.| +...+.|+.-....    .....+.++.|. + +. ++.++.++.|.. ..+.++
T Consensus        35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~-~-~~-~~~~g~~g~i~~-S~DgG~  109 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQ-G-NE-GWIVGEPPIMLH-TTDGGQ  109 (327)
T ss_dssp             SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEE-T-TE-EEEEEETTEEEE-ESSTTS
T ss_pred             CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEec-C-Ce-EEEEECCCeEEE-ECCCCC
Confidence            457899999888876667777765 33344443222221    124578999997 4 34 444555665544 223233


Q ss_pred             eeEEee------eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy3640         305 CIQTYR------GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL-KAHTGPVISLQFSSDRNMLITGSFDSSIV  377 (616)
Q Consensus       305 ~~~~~~------~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~~~~~~l~~g~~dg~i~  377 (616)
                      .-....      +....+.+.+++..++++ .+|.|.. ....|+.-... ......+..+++.+++.+++++. +|.+.
T Consensus       110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~  186 (327)
T 2xbg_A          110 SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFY  186 (327)
T ss_dssp             SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEE
T ss_pred             CceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEE
Confidence            222211      222345555555555544 4554432 22234332222 34456789999999888777664 45443


Q ss_pred             E-EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec----CC
Q psy3640         378 V-WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN----HE  452 (616)
Q Consensus       378 i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~  452 (616)
                      . +|-...              ....+  .......+..+.+.+++..++ ++.+|.+++.+...++.-..+..    ..
T Consensus       187 ~S~d~gG~--------------tW~~~--~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~  249 (327)
T 2xbg_A          187 STWEPGQT--------------AWEPH--NRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNS  249 (327)
T ss_dssp             EEECTTCS--------------SCEEE--ECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCC
T ss_pred             EEeCCCCC--------------ceeEC--CCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCC
Confidence            3 332000              11221  123445677888888887654 45577777764332333222221    12


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTV  527 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  527 (616)
                      ..+.++++.+++..++++ .+|.+ ++..+.+ ...............+..+.+.+++ .+++++.+|.|.-++-
T Consensus       250 ~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          250 VGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT  320 (327)
T ss_dssp             SCEEEEEESSSSCEEEEE-STTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred             cceEEEEecCCCEEEEEe-CCCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence            358899999877766655 46666 3333332 2222222111111234566776444 4666677887766553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=0.0015  Score=66.43  Aligned_cols=251  Identities=12%  Similarity=0.117  Sum_probs=141.7

Q ss_pred             eeeEEEcCC-CCEEEEEe-CCCcEEEEECCCCceeEEeecC---CcCEEEEEE-------cCCCCEEEEEECCC-c----
Q psy3640         313 SAEVTFSPD-QSTFCSCS-MDHTARIFNTNSGQEMHTLKAH---TGPVISLQF-------SSDRNMLITGSFDS-S----  375 (616)
Q Consensus       313 ~~~v~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~---~~~v~~l~~-------~~~~~~l~~g~~dg-~----  375 (616)
                      ...++++|. ...|+++. ..+.|++.|+.++.........   ......++|       +++++.|+++...+ .    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            456789983 55455444 4467999998877665544322   235789999       99999777776654 2    


Q ss_pred             --EEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-CCEEEEEeCCCcEEEEeCC-------CCeE-
Q psy3640         376 --IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS-NSMIASSSLDGTAKLWDVR-------TMCC-  444 (616)
Q Consensus       376 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~-------~~~~-  444 (616)
                        |.+++......         .. .......+.. -.....++++|+ +.++++-..++.|..+|+.       ++.. 
T Consensus       221 ~~V~~i~r~~~G~---------~~-~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~  289 (496)
T 3kya_A          221 PSVYIIKRNADGT---------FD-DRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW  289 (496)
T ss_dssp             EEEEEEECCTTSC---------CS-TTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCC
T ss_pred             ceEEEEecCCCCc---------ee-ecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceee
Confidence              45554321000         00 0000011111 123456788885 5555566677889999987       4543 


Q ss_pred             ----------EEE-ee-cCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecCCceeee---eEEecc---C---------C
Q psy3640         445 ----------FYT-LK-NHEDEVLDIAFDYSGSKLATA-SSDQTANLWTVGGAVELL---QTFYGH---S---------N  496 (616)
Q Consensus       445 ----------~~~-~~-~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~---~~~~~~---~---------~  496 (616)
                                ... +. ........++|+|+|+.|..+ +....|+.++.......+   ..+.+.   .         .
T Consensus       290 tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a  369 (496)
T 3kya_A          290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEA  369 (496)
T ss_dssp             CCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGC
T ss_pred             cccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccc
Confidence                      111 21 223456899999999965544 566788886654321111   122221   0         0


Q ss_pred             CeeeEE-EEEEc-------CCCCEEEEEeCCCcEEEEecCCceEEeEEeecc------------------------ccCE
Q psy3640         497 EVSKVL-DIAFD-------YSGSKLATASSDQTAKLWTVGGAVELLQTFYGH------------------------SNEV  544 (616)
Q Consensus       497 ~~~~i~-~~~~s-------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h------------------------~~~v  544 (616)
                      ....-. .++..       +++.++++-..++.|+.++....   +.++.+.                        -...
T Consensus       370 ~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~G~---v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P  446 (496)
T 3kya_A          370 RMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGI---VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDV  446 (496)
T ss_dssp             BCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECTTCB---EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSE
T ss_pred             ccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeCCCC---EEEEecccccccccCccccccCCCCchhhhhcCCC
Confidence            111223 34554       45667777677889999985442   2223221                        1236


Q ss_pred             EEEEEecC-CCEEEEEECCCcEEEecCCcCeeee
Q psy3640         545 SKVSFHPT-GKLVLSGSQDTTCRLWSTESGECIQ  577 (616)
Q Consensus       545 ~~l~~spd-g~~l~s~s~dg~i~iwd~~~~~~~~  577 (616)
                      ..|+++++ |.+.++=..+..|+.++++....+.
T Consensus       447 ~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          447 SGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             cEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            78899987 6655555567788888887655544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.04  E-value=0.0026  Score=61.06  Aligned_cols=197  Identities=11%  Similarity=0.177  Sum_probs=123.1

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCC----CC---EEEEEEC---CCcEEEEecccccCCccc
Q psy3640         321 DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD----RN---MLITGSF---DSSIVVWDIQYQFGTRNA  390 (616)
Q Consensus       321 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~----~~---~l~~g~~---dg~i~iwd~~~~~~~~~~  390 (616)
                      ....++.....+-+.+||+ +|+.++.+..  +.+..+..-|+    |+   ++++...   +++|.+|++....     
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-----  110 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-----  110 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----
Confidence            4456666667788999999 7888888753  56677766652    22   2333333   5789999874211     


Q ss_pred             ccccccccCCcceEEEe-------cCccceeEEEE--ccC-CC-EEEEEeCCCcEEEEeC-------CCCeEEEEeecCC
Q psy3640         391 YAESTYRASHKPIHILT-------GHSQEISNCLF--NFS-NS-MIASSSLDGTAKLWDV-------RTMCCFYTLKNHE  452 (616)
Q Consensus       391 ~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~-------~~~~~~~~~~~~~  452 (616)
                                .++....       .....+..+++  ++. +. ++++...+|.+..|++       .+.+.++++.. .
T Consensus       111 ----------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-g  179 (355)
T 3amr_A          111 ----------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-N  179 (355)
T ss_dssp             ----------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-S
T ss_pred             ----------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-C
Confidence                      1122221       11145556666  664 43 6888888899999988       23466677763 4


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce----eeeeEEeccCCCeeeEEEEEE--cCCCC-EEEEEe-CCCcEEE
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAV----ELLQTFYGHSNEVSKVLDIAF--DYSGS-KLATAS-SDQTAKL  524 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~v  524 (616)
                      +.+..+..++....|+.+-++..|..++.....    ..+... ........+..+++  .++++ +|++.+ .++...+
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~-~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~V  258 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAI  258 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB-SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEE
T ss_pred             CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe-cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEE
Confidence            678899999998999999998766666644221    222222 22222224666666  56666 666666 5779999


Q ss_pred             EecCCceEEeEEe
Q psy3640         525 WTVGGAVELLQTF  537 (616)
Q Consensus       525 wd~~~~~~~~~~~  537 (616)
                      ||.+...+.+..+
T Consensus       259 ydr~~~~~~vg~f  271 (355)
T 3amr_A          259 YDRQGKNKYVADF  271 (355)
T ss_dssp             EESSTTCCEEEEE
T ss_pred             EECCCCCcEEEEE
Confidence            9997434455444

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.03  E-value=0.013  Score=57.41  Aligned_cols=261  Identities=10%  Similarity=0.121  Sum_probs=165.0

Q ss_pred             CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640         293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF  372 (616)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~  372 (616)
                      ..|.|.|+.++..+..-.-.....-.+|..+.+|.-. ...+.+||+++.+.++...-. .+|.--.|-.+ +.|+..+ 
T Consensus        48 ~~vvIiDl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~-~~l~lVT-  123 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-  123 (494)
T ss_dssp             CEEEEEETTSTTSCEEEECCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEET-TEEEEEC-
T ss_pred             CeEEEEECCCCCcceecccccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCC-CeEEEEc-
Confidence            4788889998877766555666667899999888776 788999999999999888754 45666677644 3454444 


Q ss_pred             CCcEEEEecccccCCcccccccccccCCcceEEEecCc----cceeEEEEccCCCEEEEEe-------CCCcEEEEeCCC
Q psy3640         373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS----QEISNCLFNFSNSMIASSS-------LDGTAKLWDVRT  441 (616)
Q Consensus       373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~  441 (616)
                      +..|+-|++..               ...|...+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.
T Consensus       124 ~taVyHWsi~~---------------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er  188 (494)
T 1bpo_A          124 DNAVYHWSMEG---------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (494)
T ss_dssp             SSEEEEEESSS---------------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT
T ss_pred             CCeeEEecccC---------------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc
Confidence            66899999863               234555554443    4455566677777766443       246788999876


Q ss_pred             CeEEEEeecCCCCEEEEEEcCCC---CEEEEEeCC---CcEEEEecCCc--------eeeeeEEeccCCCeeeEEEEEEc
Q psy3640         442 MCCFYTLKNHEDEVLDIAFDYSG---SKLATASSD---QTANLWTVGGA--------VELLQTFYGHSNEVSKVLDIAFD  507 (616)
Q Consensus       442 ~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~~d---g~i~iwd~~~~--------~~~~~~~~~~~~~~~~i~~~~~s  507 (616)
                      +. -+.+++|...-..+....+.   ..++.+...   +.+++-++...        .+....+........--.++..+
T Consensus       189 ~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs  267 (494)
T 1bpo_A          189 KV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS  267 (494)
T ss_dssp             CC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE
T ss_pred             cc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec
Confidence            53 45566666554444433211   233334332   78889888543        11222222232222334578889


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640         508 YSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE  574 (616)
Q Consensus       508 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~  574 (616)
                      +....+...+.-|.+++||+.++..... -+-...+|-..+-+....=++.....|.|.--.++...
T Consensus       268 ~kygviyviTK~G~i~lyDleTgt~i~~-nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          268 EKHDVVFLITKYGYIHLYDLETGTCIYM-NRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             TTTTEEEEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             ccCCEEEEEecCceEEEEecccceeeee-ecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence            9999999999999999999999644433 33344555544444444445555566665555544433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.02  E-value=0.00012  Score=80.25  Aligned_cols=193  Identities=10%  Similarity=0.035  Sum_probs=109.6

Q ss_pred             ceeEEEEc-cCCCEEEEEeC-CC----cEEEEeCCCC-eEEEE-eecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q psy3640         412 EISNCLFN-FSNSMIASSSL-DG----TAKLWDVRTM-CCFYT-LKNHEDEVLDIAFDYSGSKLATASSD-----QTANL  478 (616)
Q Consensus       412 ~i~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~i  478 (616)
                      .+....|+ |+|+.++.+.. +|    .|+++|+.++ +.+.. +.   ....+++|+|||+.|+....+     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            45678899 99998876544 23    4999999988 63211 11   113467899999988877655     25777


Q ss_pred             EecCCceee-eeEEeccCCCeeeEEEEEEcCCCCEEEEEeC---CCcEEEEecCCceEEe--EEe-eccccCEEEEEEec
Q psy3640         479 WTVGGAVEL-LQTFYGHSNEVSKVLDIAFDYSGSKLATASS---DQTAKLWTVGGAVELL--QTF-YGHSNEVSKVSFHP  551 (616)
Q Consensus       479 wd~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~--~~~-~~h~~~v~~l~~sp  551 (616)
                      +++.+.... ...+.....  .....+.|+|||++|+....   ...|.++|+.++....  ..+ ........++.|+.
T Consensus       252 ~~lgt~~~~~~lv~~~~~~--~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNP--LFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCT--TCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EECCCCchhcEEEEecCCC--ceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            787664322 112211111  12457899999999887663   3468888887642111  222 23344455555544


Q ss_pred             CCCEEE-EEECC----CcEEEecCCcCeeeeE-eccCcc--cEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         552 TGKLVL-SGSQD----TTCRLWSTESGECIQV-LKAHED--DVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       552 dg~~l~-s~s~d----g~i~iwd~~~~~~~~~-~~~h~~--~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                       |..|+ ....+    ..|..+++.++..... +-.|..  .+.++.+. .+.++++...||..++|-
T Consensus       330 -g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          330 -TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             -TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             -CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence             55544 44333    2566677765322222 223333  34444443 234556667777655543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.01  E-value=0.0098  Score=64.72  Aligned_cols=232  Identities=11%  Similarity=0.060  Sum_probs=138.7

Q ss_pred             CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640         330 MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLI-TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG  408 (616)
Q Consensus       330 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (616)
                      ....|+..++.......... ....+..++|++....|+ +-...+.|+.+++.....            .......+..
T Consensus       402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~------------~~~~~~vi~~  468 (791)
T 3m0c_C          402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYDTVISR  468 (791)
T ss_dssp             CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CEEEECS
T ss_pred             cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC------------CcceeEEEec
Confidence            44568888887655444333 456678999998655555 444567788888752100            0122233333


Q ss_pred             CccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecCCce
Q psy3640         409 HSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS-D-QTANLWTVGGAV  485 (616)
Q Consensus       409 ~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~iwd~~~~~  485 (616)
                      .......+++.+.+..| ++-...+.|.+.++........+...-.....|+++|.+..|+.+.. . +.|...++....
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            44556788998877544 45555688999998765544444444556899999998666666553 2 678888886643


Q ss_pred             eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeec--cccCEEEEEEecCCCEEEEEECC
Q psy3640         486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYG--HSNEVSKVSFHPTGKLVLSGSQD  562 (616)
Q Consensus       486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~--h~~~v~~l~~spdg~~l~s~s~d  562 (616)
                      ..  .+..  ........+++++.+..|+.+.. .+.|...++....... ....  .-.....|++..+ .+.++-...
T Consensus       549 ~~--~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~-v~~~~~~l~~P~glav~~~-~lYwtD~~~  622 (791)
T 3m0c_C          549 IY--SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT-ILEDEKRLAHPFSLAVFED-KVFWTDIIN  622 (791)
T ss_dssp             EE--EEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-EEECTTTTSSEEEEEEETT-EEEEEETTT
T ss_pred             eE--EEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE-EecCCCccCCCCEEEEeCC-EEEEEECCC
Confidence            22  1211  22234667999987777776654 5689999987643222 2222  2233456666433 333444456


Q ss_pred             CcEEEecCCcCeeeeEec
Q psy3640         563 TTCRLWSTESGECIQVLK  580 (616)
Q Consensus       563 g~i~iwd~~~~~~~~~~~  580 (616)
                      +.|...+..+|+.+..+.
T Consensus       623 ~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          623 EAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             TEEEEEETTTCCCCEEEE
T ss_pred             CEEEEEeCCCCcceEEee
Confidence            778888877786665554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0072  Score=61.39  Aligned_cols=250  Identities=8%  Similarity=-0.021  Sum_probs=141.7

Q ss_pred             cEEEEEEcCC--CCEEE-EECCCcEEEEeCCCCceEEEeeCC---CCcEEEEEE-------eCCCCCEEEEEECCC----
Q psy3640         231 VVYAVAFSEP--YGCLT-GSYDRTCKLWDIKSGHEICTYRGH---QNVVYAVAF-------SEPYGDKILTGSFDK----  293 (616)
Q Consensus       231 ~I~~l~fs~~--~~lls-~s~d~~I~iwd~~~~~~~~~~~~h---~~~V~~l~~-------~~~~~~~l~s~s~dg----  293 (616)
                      ....|+|.|.  +.++. ....+.|++.|++++.........   ......++|       + ++++.++++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d-~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYA-DEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTB-CTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccC-CCCCEEEEEeCCCCCcc
Confidence            4678899983  44444 444577999999888776555432   246899999       8 7788666666554    


Q ss_pred             ---eEEEEeCCC-ccee-----EEe--eeceeeEEEcCCC-CEEEEEeCCCcEEEEECC-------CCce----------
Q psy3640         294 ---TLKLWASAK-EECI-----QTY--RGHSAEVTFSPDQ-STFCSCSMDHTARIFNTN-------SGQE----------  344 (616)
Q Consensus       294 ---~i~iwd~~~-~~~~-----~~~--~~~~~~v~~~~~~-~~l~~~~~dg~i~i~d~~-------~~~~----------  344 (616)
                         .|.+.+... +...     ..+  -.+...++++|++ .++++-..++.|..+|+.       ++..          
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence               255665443 2221     122  1345567899954 555566677889999987       5543          


Q ss_pred             -eEE-ee-cCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCc---ccccccccccCCcc-eEEEecCcccee-E
Q psy3640         345 -MHT-LK-AHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTR---NAYAESTYRASHKP-IHILTGHSQEIS-N  415 (616)
Q Consensus       345 -~~~-~~-~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~i~-~  415 (616)
                       ... +. +.......++|+|+|+.|..+ +..+.|+.++........   ....... ...... -......-.... .
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~~P~~g  377 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQG  377 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCSSEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccCCCeEE
Confidence             112 11 123345799999999965554 456788887654211000   0000000 000000 000000001122 3


Q ss_pred             EEEc-------cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC------------------------CCCEEEEEEcCC-
Q psy3640         416 CLFN-------FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH------------------------EDEVLDIAFDYS-  463 (616)
Q Consensus       416 ~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~l~~~~~-  463 (616)
                      ++..       .++.+.++-..++.|+.++ .++. +.++.+.                        -.....|+++++ 
T Consensus       378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            4443       4566666666778899998 4553 4444322                        124678899986 


Q ss_pred             CCEEEEEeCCCcEEEEecCCc
Q psy3640         464 GSKLATASSDQTANLWTVGGA  484 (616)
Q Consensus       464 ~~~l~~~~~dg~i~iwd~~~~  484 (616)
                      +.++++=..+..|+.+++...
T Consensus       456 g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          456 EMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             TEEEEEETTTTEEEEEEECCC
T ss_pred             CEEEEEeCCCCEEEEEECCCC
Confidence            666666666778888887654

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.99  E-value=0.0018  Score=62.18  Aligned_cols=189  Identities=12%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC----CC---EEEEEeC---CCcEEEEecCCceeeeeE
Q psy3640         421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS----GS---KLATASS---DQTANLWTVGGAVELLQT  490 (616)
Q Consensus       421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~----~~---~l~~~~~---dg~i~iwd~~~~~~~~~~  490 (616)
                      ...+++.....+-+.+||+ +++.++.+..  +.++.+..-|.    |+   ++++...   ++++.+|++......+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4456666677788999999 8888888753  66777776663    22   2333333   578999977532222333


Q ss_pred             Eecc--C--CCeeeEEEEEE--cCC-CC-EEEEEeCCCcEEEEecCC------ceEEeEEeeccccCEEEEEEecCCCEE
Q psy3640         491 FYGH--S--NEVSKVLDIAF--DYS-GS-KLATASSDQTAKLWTVGG------AVELLQTFYGHSNEVSKVSFHPTGKLV  556 (616)
Q Consensus       491 ~~~~--~--~~~~~i~~~~~--s~~-~~-~l~~~~~dg~i~vwd~~~------~~~~~~~~~~h~~~v~~l~~spdg~~l  556 (616)
                      ....  .  .....+..+|+  +|. +. ++++...+|.+..|++..      ..+.++.+.- .+.+-.+...+....|
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~L  194 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRL  194 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeE
Confidence            3111  1  11134455677  774 44 688888899999998832      2344555543 4578888999988899


Q ss_pred             EEEECCCcEEEecCC-----cCeeeeEec-cCc-ccEEEEEEe--eCCC-EEEEee-CCCcEEEcccC
Q psy3640         557 LSGSQDTTCRLWSTE-----SGECIQVLK-AHE-DDVFSCGFN--YNGD-TIITAS-KDNTCCIWRSM  613 (616)
Q Consensus       557 ~s~s~dg~i~iwd~~-----~~~~~~~~~-~h~-~~V~~l~~s--~~~~-~l~t~s-~Dg~i~vW~~~  613 (616)
                      ..+-++..|..++.+     +++.+..+. ++- ..+..|++-  ++++ +|++++ .++++.+|+..
T Consensus       195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999998766666644     355665553 222 358888874  4555 666666 56799999985

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.91  E-value=0.012  Score=57.55  Aligned_cols=236  Identities=12%  Similarity=0.098  Sum_probs=124.7

Q ss_pred             CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceE--EEee---CCCCcEEEEEEeCCC---CCEE-EEEECC-----Ce
Q psy3640         229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEI--CTYR---GHQNVVYAVAFSEPY---GDKI-LTGSFD-----KT  294 (616)
Q Consensus       229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~--~~~~---~h~~~V~~l~~~~~~---~~~l-~s~s~d-----g~  294 (616)
                      -.....++|.|+++++++..++.|.+++  +++..  ..+.   ........++++ |+   +..| ++-+..     ..
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~-pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALH-PRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEEC-CCCCCCCEEEEEEecCCCCCccE
Confidence            3456799999999988888889999998  44422  2221   124578899998 55   3444 444432     56


Q ss_pred             EEEEeCCCcc-----ee-EEeee------ceeeEEEcCCCCEEEEEeC-------------CCcEEEEECCC--------
Q psy3640         295 LKLWASAKEE-----CI-QTYRG------HSAEVTFSPDQSTFCSCSM-------------DHTARIFNTNS--------  341 (616)
Q Consensus       295 i~iwd~~~~~-----~~-~~~~~------~~~~v~~~~~~~~l~~~~~-------------dg~i~i~d~~~--------  341 (616)
                      |..++...+.     .+ ..+..      ....++|.|++.+.++.+.             .|.|.-++...        
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf  186 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF  186 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence            7778776432     11 11221      1246799999976666432             14565565542        


Q ss_pred             ------CceeEEeecCCcCEEEEEEcC-CCCEEEEEECCCcE------EEEeccccc--CCcccccccccccCCcceEEE
Q psy3640         342 ------GQEMHTLKAHTGPVISLQFSS-DRNMLITGSFDSSI------VVWDIQYQF--GTRNAYAESTYRASHKPIHIL  406 (616)
Q Consensus       342 ------~~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i------~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~  406 (616)
                            ...+.. .++. ....++|+| ++.++++-.....+      .+.-+....  .-..............+...+
T Consensus       187 ~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          187 LGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                  011111 1232 246789999 66655554333331      122222111  000000000000011233333


Q ss_pred             ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCe----E--EEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640         407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC----C--FYTLKNHEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       407 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~--~~~~~~~~~~v~~l~~~~~~~~l~~~~  471 (616)
                      . +......++| .++.++++....+.|...++....    .  ...+......+..+++.|+|.++++..
T Consensus       265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            2 2234456666 567666666666777777765332    1  122222346789999999997766654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.89  E-value=0.0046  Score=58.75  Aligned_cols=199  Identities=9%  Similarity=0.142  Sum_probs=122.8

Q ss_pred             CccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEE-eec----CC--CCEEEEEE---cCCCCEEEEEe------
Q psy3640         409 HSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYT-LKN----HE--DEVLDIAF---DYSGSKLATAS------  471 (616)
Q Consensus       409 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~-~~~----~~--~~v~~l~~---~~~~~~l~~~~------  471 (616)
                      ....-.++.|.+....+..++ ..+.|..||...+..... +..    ..  ..+..+.+   +|+++++++..      
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence            333445678887666666666 689999999976543333 221    11  13678999   68877777544      


Q ss_pred             -------CCCcEEEEecC---CceeeeeEEe-ccC-C-------CeeeEEEEEEcCCCCEEEEEeCC-CcEEEEecCCce
Q psy3640         472 -------SDQTANLWTVG---GAVELLQTFY-GHS-N-------EVSKVLDIAFDYSGSKLATASSD-QTAKLWTVGGAV  531 (616)
Q Consensus       472 -------~dg~i~iwd~~---~~~~~~~~~~-~~~-~-------~~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~  531 (616)
                             .+..+..||+.   ++......-. ... .       .......++.+++|+..++++.. +.|...+.... 
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-  169 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-  169 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence                   25779999988   4433322221 111 0       22357789999999999999988 88888887653 


Q ss_pred             EEeEEeec-----cccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee--eeEec--cC---cccEEE-EEEeeCCCE-
Q psy3640         532 ELLQTFYG-----HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC--IQVLK--AH---EDDVFS-CGFNYNGDT-  597 (616)
Q Consensus       532 ~~~~~~~~-----h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~--~~~~~--~h---~~~V~~-l~~s~~~~~-  597 (616)
                      ........     .....+.|+++|+|+.|++....|.+..+|+.+...  +. ..  +.   -..... +.--.+|+. 
T Consensus       170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vl  248 (334)
T 2p9w_A          170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESV  248 (334)
T ss_dssp             CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred             EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEE
Confidence            22111111     112367999999999998887799999999875433  21 11  21   112233 344457777 


Q ss_pred             EEEeeCCCcEEE
Q psy3640         598 IITASKDNTCCI  609 (616)
Q Consensus       598 l~t~s~Dg~i~v  609 (616)
                      |++.+..+.+.+
T Consensus       249 lV~~~~~~~~~l  260 (334)
T 2p9w_A          249 LVGARAPYAISF  260 (334)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEcCCCCEEEE
Confidence            455545554333

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.89  E-value=0.023  Score=55.63  Aligned_cols=260  Identities=8%  Similarity=0.122  Sum_probs=165.8

Q ss_pred             CcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEE
Q psy3640         209 RTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILT  288 (616)
Q Consensus       209 g~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s  288 (616)
                      ..|.|-|+.++..+.+-.   -.--+.-.+|..++++--...++.|+|+++.+.+....-.. .|.--.|..  .+.|+.
T Consensus        48 ~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~l  121 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVAL  121 (494)
T ss_dssp             CEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEE
T ss_pred             CeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEE
Confidence            378889988765542211   01113345677776655568999999999999888887544 555666652  355555


Q ss_pred             EECCCeEEEEeCCCc-ceeEEeeecee----eE---EEcCCCCEEEEEe-------CCCcEEEEECCCCceeEEeecCCc
Q psy3640         289 GSFDKTLKLWASAKE-ECIQTYRGHSA----EV---TFSPDQSTFCSCS-------MDHTARIFNTNSGQEMHTLKAHTG  353 (616)
Q Consensus       289 ~s~dg~i~iwd~~~~-~~~~~~~~~~~----~v---~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~  353 (616)
                      .+ +..|.-|++... .+.+.+..|..    .+   ..+++.++++..+       -.|.+.+|..+. +..+.+.+|.+
T Consensus       122 VT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa  199 (494)
T 1bpo_A          122 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAA  199 (494)
T ss_dssp             EC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEE
T ss_pred             Ec-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeee
Confidence            54 478999999753 45555554332    22   5788888876443       237788999874 45667778877


Q ss_pred             CEEEEEEcCCC---CEEEEEECC---CcEEEEecccccCCcccccccccccCCcceEEE---ecCccceeEEEEccCCCE
Q psy3640         354 PVISLQFSSDR---NMLITGSFD---SSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL---TGHSQEISNCLFNFSNSM  424 (616)
Q Consensus       354 ~v~~l~~~~~~---~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~  424 (616)
                      ....+....+.   +.++.+...   +.+++.++.........+       ..+.....   ....+--.++..++....
T Consensus       200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f-------~kk~vdv~fppe~~~DFPvamqvs~kygv  272 (494)
T 1bpo_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKAVDVFFPPEAQNDFPVAMQISEKHDV  272 (494)
T ss_dssp             EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC-------CCEEEECCCCTTSTTCCEEEEEEETTTTE
T ss_pred             eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc-------cceeeeeeCCcccccCceeEEEecccCCE
Confidence            66555543221   244444432   789999886431111111       11111111   112334557788888889


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy3640         425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGG  483 (616)
Q Consensus       425 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~  483 (616)
                      +..-+.-|.+++||+.++.++..-+-....|..-+.+....-++.....|.+.--.++.
T Consensus       273 iyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          273 VFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             EEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            99999999999999999999998887778887776666655666666777776665544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.88  E-value=0.0045  Score=58.79  Aligned_cols=204  Identities=10%  Similarity=0.126  Sum_probs=127.0

Q ss_pred             CcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecC-------ccceeEEEE---cc
Q psy3640         352 TGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH-------SQEISNCLF---NF  420 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~---~~  420 (616)
                      ...-.++.|++....+..++ ..++|..||...                ..........       ...+..+.+   .+
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~----------------~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~   75 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT----------------QSHFNVVIDGASSNGDGEQQMSGLSLLTHDN   75 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTT----------------CCEEEECCTTTCCSSCCSEEEEEEEESSSSS
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC----------------CeEEEEecCCccccCCCcceeeEEEEeccCC
Confidence            33446789988767777777 689999999752                1111111111       113468888   57


Q ss_pred             CCCEEEEEeC-------------CCcEEEEeCC---CCeEEEEeec-------------CCCCEEEEEEcCCCCEEEEEe
Q psy3640         421 SNSMIASSSL-------------DGTAKLWDVR---TMCCFYTLKN-------------HEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       421 ~~~~l~~~~~-------------dg~i~iwd~~---~~~~~~~~~~-------------~~~~v~~l~~~~~~~~l~~~~  471 (616)
                      +++++++...             +..+..||+.   +++.+....-             ......+++.+++|+..++++
T Consensus        76 ~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s  155 (334)
T 2p9w_A           76 SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA  155 (334)
T ss_dssp             CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence            8777775442             5779999999   7776655441             113488999999999999988


Q ss_pred             CC-CcEEEEecCCceeeeeEEecc--CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee--cc---ccC
Q psy3640         472 SD-QTANLWTVGGAVELLQTFYGH--SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY--GH---SNE  543 (616)
Q Consensus       472 ~d-g~i~iwd~~~~~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~h---~~~  543 (616)
                      .. +.|...+.... .........  .........++++|+++.|++....|.+..+|+...........  +.   -..
T Consensus       156 ~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~  234 (334)
T 2p9w_A          156 LGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSG  234 (334)
T ss_dssp             ESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTT
T ss_pred             CCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccC
Confidence            88 88777777654 222111111  11222356789999999999988899999999875322001111  21   122


Q ss_pred             EEEE-EEecCCCE-EEEEECCCcEEEecCCc
Q psy3640         544 VSKV-SFHPTGKL-VLSGSQDTTCRLWSTES  572 (616)
Q Consensus       544 v~~l-~~spdg~~-l~s~s~dg~i~iwd~~~  572 (616)
                      ...+ ..-.+|+. |++....+.+.+.+.+.
T Consensus       235 ~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          235 TEKIVTVPVGNESVLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred             cccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence            3443 33457777 55555666666666544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.87  E-value=0.02  Score=62.26  Aligned_cols=224  Identities=8%  Similarity=-0.071  Sum_probs=135.3

Q ss_pred             CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCCC----ceEEEeeCCCCcEEEEEEeCC
Q psy3640         208 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKSG----HEICTYRGHQNVVYAVAFSEP  281 (616)
Q Consensus       208 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~~----~~~~~~~~h~~~V~~l~~~~~  281 (616)
                      ...|+..++.......... ....+..++|.+... ++ +-...+.|+.+++...    .....+.........|++.+.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            3468888887665544333 456678999998544 43 5556788999998753    233344434456678888844


Q ss_pred             CCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC-C-CcEEEEECCCCceeEEeecCCcCEE
Q psy3640         282 YGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM-D-HTARIFNTNSGQEMHTLKAHTGPVI  356 (616)
Q Consensus       282 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~v~  356 (616)
                      .++++++-...+.|.+.++........+.   .....|++.|....|+.... . +.|...++........+...-....
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCce
Confidence            44566666667899999987654433332   23567899998777666653 2 6788888875444333443345678


Q ss_pred             EEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEec--CccceeEEEEccCCCEEEEEeCCCc
Q psy3640         357 SLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG--HSQEISNCLFNFSNSMIASSSLDGT  433 (616)
Q Consensus       357 ~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~  433 (616)
                      .|++++.+..|+.+.. .+.|...++.                ..........  .-.....+++. .+.++++-...+.
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~d----------------G~~~~~v~~~~~~l~~P~glav~-~~~lYwtD~~~~~  624 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVN----------------GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA  624 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETT----------------SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecC----------------CCceEEEecCCCccCCCCEEEEe-CCEEEEEECCCCE
Confidence            9999987776666653 4678888875                2222222222  11223345542 2334444445577


Q ss_pred             EEEEeCCCCeEEEEee
Q psy3640         434 AKLWDVRTMCCFYTLK  449 (616)
Q Consensus       434 i~iwd~~~~~~~~~~~  449 (616)
                      |...|..+++.+..+.
T Consensus       625 I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          625 IFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EEEEETTTCCCCEEEE
T ss_pred             EEEEeCCCCcceEEee
Confidence            8878877776555554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.69  E-value=0.00013  Score=78.73  Aligned_cols=242  Identities=10%  Similarity=0.035  Sum_probs=134.3

Q ss_pred             CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                      .+.|+..++.+.+....+.. ...+..++|++.+..|+.+. ..+.|+.+++......            ......+...
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~------------~~~~~~i~~~  451 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV------------SSYDTVISRD  451 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------------CCCCCBCCSC
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCC------------cceEEEEeCC
Confidence            45677788776654433332 34567889998766666554 4578888887531000            0011111111


Q ss_pred             ccceeEEEEccCC-CEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC-C-CcEEEEecCCcee
Q psy3640         410 SQEISNCLFNFSN-SMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS-D-QTANLWTVGGAVE  486 (616)
Q Consensus       410 ~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~-d-g~i~iwd~~~~~~  486 (616)
                      ......+++.+.+ .++++-...+.|.++++........+.........++++|.+.+|+.+.. . +.|..+++.....
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~  531 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  531 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe
Confidence            1234457777544 44455455688999998765443333333345678899997665555443 2 6777777755322


Q ss_pred             eeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceEEeEEee--ccccCEEEEEEecCCCEEEEEECCC
Q psy3640         487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVELLQTFY--GHSNEVSKVSFHPTGKLVLSGSQDT  563 (616)
Q Consensus       487 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~--~h~~~v~~l~~spdg~~l~s~s~dg  563 (616)
                      .  .+..  ........++++|++..|+.+. ..+.|.++++...... ....  ........|++..+ .++++....+
T Consensus       532 ~--~l~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~-~lywtd~~~~  605 (699)
T 1n7d_A          532 Y--SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED-KVFWTDIINE  605 (699)
T ss_dssp             C--EESC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred             e--EEEe--CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence            1  1111  1122234689998866555544 5678999998653222 1111  11223445566544 4555555678


Q ss_pred             cEEEecCCcCeeeeEeccCcccEEEEEE
Q psy3640         564 TCRLWSTESGECIQVLKAHEDDVFSCGF  591 (616)
Q Consensus       564 ~i~iwd~~~~~~~~~~~~h~~~V~~l~~  591 (616)
                      .|..++..+|+.+..+.........|++
T Consensus       606 ~V~~~d~~~G~~~~~i~~~~~~P~~i~v  633 (699)
T 1n7d_A          606 AIFSANRLTGSDVNLLAENLLSPEDMVL  633 (699)
T ss_dssp             CEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred             eEEEEEccCCCceEEeecCCCCCcEEEE
Confidence            8999998888887776543333344443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.66  E-value=0.037  Score=54.18  Aligned_cols=228  Identities=11%  Similarity=0.027  Sum_probs=119.4

Q ss_pred             CCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEE--EEEe---ccCCcEEEEEEcCC----CCEE-EEECC-----C
Q psy3640         186 HLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI--CTYR---GHQNVVYAVAFSEP----YGCL-TGSYD-----R  250 (616)
Q Consensus       186 h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~--~~~~---~h~~~I~~l~fs~~----~~ll-s~s~d-----~  250 (616)
                      .-.....++|.|+|++++ +..+|.|.+++  +++..  ..+.   ........++|+|+    +.+. +....     +
T Consensus        29 ~l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           29 GLEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CCSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            344678999999998555 45679999998  44422  1111   12457899999998    4433 33332     6


Q ss_pred             cEEEEeCCCCc-----eE-EEee---CCCCcEEEEEEeCCCCCEEEEEECC-------------CeEEEEeCCCc-----
Q psy3640         251 TCKLWDIKSGH-----EI-CTYR---GHQNVVYAVAFSEPYGDKILTGSFD-------------KTLKLWASAKE-----  303 (616)
Q Consensus       251 ~I~iwd~~~~~-----~~-~~~~---~h~~~V~~l~~~~~~~~~l~s~s~d-------------g~i~iwd~~~~-----  303 (616)
                      .|..++...+.     .+ ..+.   +.......++|. +++.+.++.+..             |.|.-++....     
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n  184 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN  184 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence            78888877542     11 1132   111233688998 788776664421             45665665430     


Q ss_pred             --------ceeEEeeec--eeeEEEcC-CCCEEEEEeCCCcE------EEEECCCCc------------------eeEEe
Q psy3640         304 --------ECIQTYRGH--SAEVTFSP-DQSTFCSCSMDHTA------RIFNTNSGQ------------------EMHTL  348 (616)
Q Consensus       304 --------~~~~~~~~~--~~~v~~~~-~~~~l~~~~~dg~i------~i~d~~~~~------------------~~~~~  348 (616)
                              .......++  ...++|+| ++.++++-...+.+      .+.-+..+.                  ....+
T Consensus       185 pf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~  264 (352)
T 2ism_A          185 PFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW  264 (352)
T ss_dssp             TTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred             cccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence                    111111122  33468999 55555544333321      122222221                  22233


Q ss_pred             ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEE
Q psy3640         349 KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS  428 (616)
Q Consensus       349 ~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  428 (616)
                      . +......++| .+|+++++.-..+.|...++........          ......+......+..+++.|+|.+.++.
T Consensus       265 ~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~----------~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          265 P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR----------VLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE----------EEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee----------ecchheecccCCCeeEEEECCCCcEEEEE
Confidence            2 2234567777 3566665555566677766642110000          00011111223567889999998777665


Q ss_pred             e
Q psy3640         429 S  429 (616)
Q Consensus       429 ~  429 (616)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.58  E-value=0.00018  Score=77.71  Aligned_cols=234  Identities=9%  Similarity=-0.086  Sum_probs=131.7

Q ss_pred             CCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EE-EEECCCcEEEEeCCC----CceEEEeeCCCCcEEEEEEeCC
Q psy3640         208 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CL-TGSYDRTCKLWDIKS----GHEICTYRGHQNVVYAVAFSEP  281 (616)
Q Consensus       208 dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~-ll-s~s~d~~I~iwd~~~----~~~~~~~~~h~~~V~~l~~~~~  281 (616)
                      .+.|+..++.+.+....+.. ...+..++|.+.+. ++ +-...+.|+.+++..    ......+.........+++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            35688888877655443332 34566889988665 33 434568899999875    2222222212223456777644


Q ss_pred             CCCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeC-C-CcEEEEECCCCceeEEeecCCcCEE
Q psy3640         282 YGDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSM-D-HTARIFNTNSGQEMHTLKAHTGPVI  356 (616)
Q Consensus       282 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~v~  356 (616)
                      .++++++-...+.|.+.++........+.   .....+++.|.+..|+.+.. . +.|..+++........+...-....
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            45555655667889999987654433332   23456789987665555443 2 6788877754332222222233457


Q ss_pred             EEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEe--cCccceeEEEEccCCCEEEEEeCCCc
Q psy3640         357 SLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT--GHSQEISNCLFNFSNSMIASSSLDGT  433 (616)
Q Consensus       357 ~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~  433 (616)
                      .|+|+|++..|+.+ +..+.|..+++..                ........  ........+++..+ .++++....+.
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG----------------~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~  606 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNG----------------GNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA  606 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSS----------------SCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCC----------------CceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence            89999876555544 4567888888752                11111111  11122334444433 45555556688


Q ss_pred             EEEEeCCCCeEEEEeecCCCCEEEEE
Q psy3640         434 AKLWDVRTMCCFYTLKNHEDEVLDIA  459 (616)
Q Consensus       434 i~iwd~~~~~~~~~~~~~~~~v~~l~  459 (616)
                      |..+|..+++.+..+.........|+
T Consensus       607 V~~~d~~~G~~~~~i~~~~~~P~~i~  632 (699)
T 1n7d_A          607 IFSANRLTGSDVNLLAENLLSPEDMV  632 (699)
T ss_dssp             EEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred             EEEEEccCCCceEEeecCCCCCcEEE
Confidence            99999888887776654333333443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.57  E-value=0.07  Score=52.15  Aligned_cols=239  Identities=12%  Similarity=0.076  Sum_probs=128.3

Q ss_pred             CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCc-eEEEee---CCCCcEEEEEEeCCC----CCEEEEEEC---C----C
Q psy3640         229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGH-EICTYR---GHQNVVYAVAFSEPY----GDKILTGSF---D----K  293 (616)
Q Consensus       229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~-~~~~~~---~h~~~V~~l~~~~~~----~~~l~s~s~---d----g  293 (616)
                      -.....++|.|+++++++..++.|++++ .+++ .+..+.   ........|+++ |+    +...++-+.   +    .
T Consensus        28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALH-PEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeC-CCCCcCCEEEEEEeccCCCCCcce
Confidence            4557899999999988888889999997 4554 222221   223568899998 54    444444432   3    5


Q ss_pred             eEEEEeCCCc-------cee-EEeee----ceeeEEEcCCCCEEEEEeC-------------CCcEEEEECCCC------
Q psy3640         294 TLKLWASAKE-------ECI-QTYRG----HSAEVTFSPDQSTFCSCSM-------------DHTARIFNTNSG------  342 (616)
Q Consensus       294 ~i~iwd~~~~-------~~~-~~~~~----~~~~v~~~~~~~~l~~~~~-------------dg~i~i~d~~~~------  342 (616)
                      .|..|+....       +.+ ..+..    ....++|.|++.+.++.+.             .|.|.-++....      
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np  185 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP  185 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence            6777776543       111 11221    1245799999987766432             245555555421      


Q ss_pred             ---ceeEEeecCCcCEEEEEEcC-CCCEEEEEECCC---cEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640         343 ---QEMHTLKAHTGPVISLQFSS-DRNMLITGSFDS---SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN  415 (616)
Q Consensus       343 ---~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  415 (616)
                         ..+. ..++.. ...++|+| +++++++-....   .|.+........-..............+...+.........
T Consensus       186 f~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G  263 (354)
T 3a9g_A          186 FPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG  263 (354)
T ss_dssp             STTCCEE-EECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred             CCCCcEE-EEccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence               1122 123333 36899999 566554433222   23332211000000000000000011233333122335567


Q ss_pred             EEE-------ccCCCEEEEEeCCCcEEEEeCCCC-eEE--EEee-cCCCCEEEEEEcCCCCEEEEEe
Q psy3640         416 CLF-------NFSNSMIASSSLDGTAKLWDVRTM-CCF--YTLK-NHEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       416 ~~~-------~~~~~~l~~~~~dg~i~iwd~~~~-~~~--~~~~-~~~~~v~~l~~~~~~~~l~~~~  471 (616)
                      +++       ..++.++++....+.|...++... ...  ..+. .....+..+++.|+|.+.++..
T Consensus       264 ~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          264 ASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             eEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            777       356777777666778888888753 222  2222 2346789999999997666654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.40  E-value=0.073  Score=51.67  Aligned_cols=205  Identities=13%  Similarity=0.139  Sum_probs=110.6

Q ss_pred             EEEEEEcCCCCEEEEE------------ECCCcEEEEecccccCCcccccccccccCCcceEEEec-----CccceeEEE
Q psy3640         355 VISLQFSSDRNMLITG------------SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-----HSQEISNCL  417 (616)
Q Consensus       355 v~~l~~~~~~~~l~~g------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~  417 (616)
                      ...++..|+|..+++.            ..+|.|.++|.......            ...+ .+.+     ..-....+.
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~------------~~~l-~~~g~~~~~~~f~PhGi~  118 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA------------VSEL-EIIGNTLDISSFNPHGIS  118 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC------------EEEC-EEECSSCCGGGCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc------------eEEE-EccCCCCCcCceeeeeeE
Confidence            3566677776444443            16899999998632110            0111 1111     122344555


Q ss_pred             Ecc--CCC--EEEEEeC--CCcEEEEeCCC--C--eEEEEeecC-CCCEEEEEEcCCCCEEEEEeC--------------
Q psy3640         418 FNF--SNS--MIASSSL--DGTAKLWDVRT--M--CCFYTLKNH-EDEVLDIAFDYSGSKLATASS--------------  472 (616)
Q Consensus       418 ~~~--~~~--~l~~~~~--dg~i~iwd~~~--~--~~~~~~~~~-~~~v~~l~~~~~~~~l~~~~~--------------  472 (616)
                      +.+  ++.  ++++-..  +.++.+|++..  .  ..+..+.+. -...+++++.++|.+.++...              
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~  198 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL  198 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence            544  343  3444333  45677776644  2  223333322 246899999999987776541              


Q ss_pred             ---CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCc--eEEeEEeeccccCEEE
Q psy3640         473 ---DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGA--VELLQTFYGHSNEVSK  546 (616)
Q Consensus       473 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~--~~~~~~~~~h~~~v~~  546 (616)
                         .|.+..++...   .....    .....-..++|+||++.|+.+. ..+.|..|++...  ....+.+ ...+..-.
T Consensus       199 ~~~~g~vyr~d~~~---~~~~~----~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDG  270 (355)
T 3sre_A          199 GLAWSFVTYYSPND---VRVVA----EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDN  270 (355)
T ss_dssp             TCCCEEEEEECTTC---CEEEE----EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEE
T ss_pred             cCCccEEEEEECCe---EEEee----cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCce
Confidence               23444444421   11111    1122345789999999887766 4789999998632  2222233 23466788


Q ss_pred             EEEec-CCCEEEEEECC-CcEEEecCC--cCeeeeEec
Q psy3640         547 VSFHP-TGKLVLSGSQD-TTCRLWSTE--SGECIQVLK  580 (616)
Q Consensus       547 l~~sp-dg~~l~s~s~d-g~i~iwd~~--~~~~~~~~~  580 (616)
                      +++.+ +|++.+++..+ +.|..|+.+  .+..+..++
T Consensus       271 i~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          271 ISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            99999 59887766544 344445544  244444443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.30  E-value=0.02  Score=54.57  Aligned_cols=146  Identities=8%  Similarity=0.022  Sum_probs=74.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeecCC--CCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceeee
Q psy3640         421 SNSMIASSSLD-----GTAKLWDVRTMCCFYTLKNHE--DEVLDIAFDYSGSKLATASSD-----QTANLWTVGGAVELL  488 (616)
Q Consensus       421 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  488 (616)
                      ++.+++.|+.+     ..+.+||..+.+-...-....  .....+.  .++..++.|+.+     ..+.+||+.+..  .
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W  187 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGH--W  187 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTE--E
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCc--E
Confidence            57777777654     358899988765433221111  1112222  256666666644     458888886642  1


Q ss_pred             eEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEECC
Q psy3640         489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD  562 (616)
Q Consensus       489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d  562 (616)
                      ...............+.  .++..++.|+.+     ..+.+||+.+.. ..+..+.........+  .-++++++.|+.+
T Consensus       188 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~  263 (301)
T 2vpj_A          188 TNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYD  263 (301)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBC
T ss_pred             EeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcC
Confidence            11111111111111122  256777777764     568999987642 2221111111112222  2367777777755


Q ss_pred             -----CcEEEecCCcCe
Q psy3640         563 -----TTCRLWSTESGE  574 (616)
Q Consensus       563 -----g~i~iwd~~~~~  574 (616)
                           ..+.+||+++.+
T Consensus       264 ~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          264 GNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SSSBEEEEEEEETTTTE
T ss_pred             CCcccccEEEEcCCCCe
Confidence                 357788877654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.27  E-value=0.015  Score=55.44  Aligned_cols=186  Identities=6%  Similarity=0.012  Sum_probs=94.5

Q ss_pred             cCCCEEEEEeCC-----CcEEEEeCCCCe---EEE--EeecCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCc
Q psy3640         420 FSNSMIASSSLD-----GTAKLWDVRTMC---CFY--TLKNHEDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGA  484 (616)
Q Consensus       420 ~~~~~l~~~~~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~  484 (616)
                      .++.+++.|+.+     ..+.+||..+.+   -..  .+.........+..  ++..++.|+.+     ..+.+||..+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            356777777754     368999987765   222  22111112222222  56666666543     35778887664


Q ss_pred             eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640         485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLS  558 (616)
Q Consensus       485 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s  558 (616)
                      .-.  ...........-..+.  .+++.++.|+.+     ..+.+||..+.. ..+..+.........+.  -++++++.
T Consensus       139 ~W~--~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~  212 (301)
T 2vpj_A          139 QWS--MLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVV  212 (301)
T ss_dssp             EEE--EEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred             eEE--ECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEE
Confidence            211  1111111111111122  267777777654     468889986642 11111111111112222  36677777


Q ss_pred             EECC-----CcEEEecCCcCeeee--EeccCcccEEEEEEeeCCCEEEEeeCC-----CcEEEcccCCC
Q psy3640         559 GSQD-----TTCRLWSTESGECIQ--VLKAHEDDVFSCGFNYNGDTIITASKD-----NTCCIWRSMNR  615 (616)
Q Consensus       559 ~s~d-----g~i~iwd~~~~~~~~--~~~~h~~~V~~l~~s~~~~~l~t~s~D-----g~i~vW~~~~~  615 (616)
                      |+.+     ..+.+||+.+.+-..  .+........  +...++++++.|+.+     ..+.+||+.++
T Consensus       213 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          213 GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG--ATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             eCCCCCcccceEEEEeCCCCcEEECCCCCCccccee--EEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            7754     468999998765332  2221111112  223377788888766     35777887653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.26  E-value=0.16  Score=49.51  Aligned_cols=234  Identities=14%  Similarity=0.101  Sum_probs=122.5

Q ss_pred             CCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcc-eeEEee------eceeeEEEcCC---CCEEEEEeC----C----
Q psy3640         270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE-CIQTYR------GHSAEVTFSPD---QSTFCSCSM----D----  331 (616)
Q Consensus       270 ~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~------~~~~~v~~~~~---~~~l~~~~~----d----  331 (616)
                      -.....++|. ++++ ++.+..+|.|++++. +++ .+..+.      .....++++|+   +..|+++..    +    
T Consensus        28 l~~P~~ia~~-pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPL-GGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEE-ETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEc-CCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            4567899999 6776 555566799999973 444 222211      23455799997   555555443    2    


Q ss_pred             CcEEEEECCCC--c-----ee-EEeec-CCcCEEEEEEcCCCCEEEEEECC-------------CcEEEEecccccCCcc
Q psy3640         332 HTARIFNTNSG--Q-----EM-HTLKA-HTGPVISLQFSSDRNMLITGSFD-------------SSIVVWDIQYQFGTRN  389 (616)
Q Consensus       332 g~i~i~d~~~~--~-----~~-~~~~~-~~~~v~~l~~~~~~~~l~~g~~d-------------g~i~iwd~~~~~~~~~  389 (616)
                      +.|..|+....  .     .+ ..+.. .......++|.|||.+.++.+..             |.|..++........+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            56777877644  1     11 11221 11224679999999866664322             3344444321000000


Q ss_pred             cccccccccCCcceEEEecCccceeEEEEcc-CCCEEEEEeCCC---cEEEEeCCC--------C--------eEEEEee
Q psy3640         390 AYAESTYRASHKPIHILTGHSQEISNCLFNF-SNSMIASSSLDG---TAKLWDVRT--------M--------CCFYTLK  449 (616)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg---~i~iwd~~~--------~--------~~~~~~~  449 (616)
                      ..       . .......++ .....++|++ ++.++++-....   .|.+.....        +        .++..+.
T Consensus       185 pf-------~-~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  255 (354)
T 3a9g_A          185 PF-------P-NSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG  255 (354)
T ss_dssp             SS-------T-TCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             CC-------C-CCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC
Confidence            00       0 111122233 2345789999 565555433222   133322100        0        1222221


Q ss_pred             cCCCCEEEEEEc-------CCCCEEEEEeCCCcEEEEecCCceeee--eEEeccCCCeeeEEEEEEcCCCCEEEEEe
Q psy3640         450 NHEDEVLDIAFD-------YSGSKLATASSDQTANLWTVGGAVELL--QTFYGHSNEVSKVLDIAFDYSGSKLATAS  517 (616)
Q Consensus       450 ~~~~~v~~l~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  517 (616)
                      ........++|.       .+|.++++....+.|...++.......  ..+..  .....+..+++.|||.++++..
T Consensus       256 ~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          256 SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--NVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--TTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--CCCCCeeEEEECCCCcEEEEEe
Confidence            123457788883       567677766667788888887532221  22221  1234578899999998776654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0057  Score=58.89  Aligned_cols=109  Identities=11%  Similarity=0.043  Sum_probs=74.1

Q ss_pred             CCEEEEECCCcEEEEeCCCCceEEEeeCC--CCcEEEEEE-eCCCCCEEEEE--ECCCeEEEEeCCCcceeEEeeece--
Q psy3640         241 YGCLTGSYDRTCKLWDIKSGHEICTYRGH--QNVVYAVAF-SEPYGDKILTG--SFDKTLKLWASAKEECIQTYRGHS--  313 (616)
Q Consensus       241 ~~lls~s~d~~I~iwd~~~~~~~~~~~~h--~~~V~~l~~-~~~~~~~l~s~--s~dg~i~iwd~~~~~~~~~~~~~~--  313 (616)
                      +.+++++.||.|.-.|..+|+...+++..  ...+. ..- ..+.+..++.+  +.||.+..++..+|.....+....  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            44679999999999999999999998754  22222 110 00112244444  589999999998885544332211  


Q ss_pred             --eeEEEc-----------CCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q psy3640         314 --AEVTFS-----------PDQSTFCSCSMDHTARIFNTNSGQEMHTLKA  350 (616)
Q Consensus       314 --~~v~~~-----------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  350 (616)
                        ..+...           ..+..+++|+.+|.+...|+.+|+.+..+..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence              112211           1567888999999999999999999998864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.18  E-value=0.029  Score=53.50  Aligned_cols=185  Identities=10%  Similarity=0.051  Sum_probs=93.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeecC--CCCEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCceeee
Q psy3640         421 SNSMIASSSLD-----GTAKLWDVRTMCCFYTLKNH--EDEVLDIAFDYSGSKLATASSDQ-----TANLWTVGGAVELL  488 (616)
Q Consensus       421 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~  488 (616)
                      ++.+++.|+.+     ..+.+||..+.+-...-...  ........  .++..++.|+.++     .+.+||+.+..  .
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE--W  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE--E
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe--E
Confidence            66777777754     35889998877543322111  11112222  2566777776553     46677776542  1


Q ss_pred             eEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-------CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640         489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSD-------QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGS  560 (616)
Q Consensus       489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-------g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s  560 (616)
                      ...............+.  .+++.++.|+.+       ..+.+||..+.. ..+..+.........+.  -++++++.|+
T Consensus       137 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG  212 (302)
T 2xn4_A          137 FHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGG  212 (302)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred             eecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECC
Confidence            11111111111111112  256667776542       458889987642 22211111111122222  2677778877


Q ss_pred             CC-----CcEEEecCCcCeee--eEeccCcccEEEEEEeeCCCEEEEeeCCC-----cEEEcccCCC
Q psy3640         561 QD-----TTCRLWSTESGECI--QVLKAHEDDVFSCGFNYNGDTIITASKDN-----TCCIWRSMNR  615 (616)
Q Consensus       561 ~d-----g~i~iwd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg-----~i~vW~~~~~  615 (616)
                      .+     ..+.+||+.+.+-.  ..+......-.  +...++++++.|+.++     .+.+||+.+.
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAG--VCAVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE--EEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCCCccccCe--EEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            54     36889998876432  22221111111  2233778888888664     4788887654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.15  E-value=0.21  Score=48.65  Aligned_cols=244  Identities=12%  Similarity=0.080  Sum_probs=125.6

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC---CCEEEEEe
Q psy3640         353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS---NSMIASSS  429 (616)
Q Consensus       353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~  429 (616)
                      .....|+|.|+|+.++++...|.|++++.......  ..       ...+ ............++++|+   +..|....
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~--~~-------~~~~-~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSA--PL-------SGVP-DVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECC--CC-------BSCC-CCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceee--Ee-------cCCc-ccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            35589999999983445566899998874311000  00       0000 011122344578999985   44444443


Q ss_pred             -C-------CCcEEEEeCCCC----eEEEE-eecC------CCCEEEEEEcCCCCEEEEEeCC-------------CcEE
Q psy3640         430 -L-------DGTAKLWDVRTM----CCFYT-LKNH------EDEVLDIAFDYSGSKLATASSD-------------QTAN  477 (616)
Q Consensus       430 -~-------dg~i~iwd~~~~----~~~~~-~~~~------~~~v~~l~~~~~~~~l~~~~~d-------------g~i~  477 (616)
                       .       ...|..|+....    ..... +...      ......++|.|+|.+.++.+..             |.|.
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~  167 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV  167 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence             2       235666665432    11111 1111      1124579999999655554332             3455


Q ss_pred             EEecCCcee------------eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC--cEEEEecCCc-------------
Q psy3640         478 LWTVGGAVE------------LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ--TAKLWTVGGA-------------  530 (616)
Q Consensus       478 iwd~~~~~~------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~-------------  530 (616)
                      -++......            ......++    .....++|+|....|.++....  .=.|.-+..+             
T Consensus       168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~  243 (353)
T 2g8s_A          168 RLTDQGEIPDDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGIN  243 (353)
T ss_dssp             EEETTSCCCTTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBC
T ss_pred             EECCCCCCCCCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCC
Confidence            555543210            00011111    2356789999444444443321  1122211110             


Q ss_pred             -----------------eEEeEEeeccccCEEEEEEec-------CCCEEEEEECCCcEEEecCCcCeeeeE---eccCc
Q psy3640         531 -----------------VELLQTFYGHSNEVSKVSFHP-------TGKLVLSGSQDTTCRLWSTESGECIQV---LKAHE  583 (616)
Q Consensus       531 -----------------~~~~~~~~~h~~~v~~l~~sp-------dg~~l~s~s~dg~i~iwd~~~~~~~~~---~~~h~  583 (616)
                                       ......+ .+......++|..       +|+++++....+.|...+++.++.+..   +....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  322 (353)
T 2g8s_A          244 YSGFKIPEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRG  322 (353)
T ss_dssp             TTSSCCTTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGC
T ss_pred             CCCCccCcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCC
Confidence                             0111112 2234577788864       466777666778888888776654322   22223


Q ss_pred             ccEEEEEEeeCCCEEEEee-CCCcEEEcccC
Q psy3640         584 DDVFSCGFNYNGDTIITAS-KDNTCCIWRSM  613 (616)
Q Consensus       584 ~~V~~l~~s~~~~~l~t~s-~Dg~i~vW~~~  613 (616)
                      ..+..+++.|||.+.++.. .+|  +||++.
T Consensus       323 ~rp~~v~~~pdG~lyv~td~~~g--~I~ri~  351 (353)
T 2g8s_A          323 QRIRDVRTGPDGYLYVLTDESSG--ELLKVS  351 (353)
T ss_dssp             CCEEEEEECTTSCEEEEECSTTE--EEEEEE
T ss_pred             CceeEEEECCCCcEEEEEeCCCC--EEEEEe
Confidence            5789999999998766543 344  566654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.11  E-value=0.044  Score=52.25  Aligned_cols=146  Identities=12%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEecCCcee
Q psy3640         421 SNSMIASSSLDG-----TAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-------QTANLWTVGGAVE  486 (616)
Q Consensus       421 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~  486 (616)
                      ++.+++.|+.++     .+.+||..+.+-...-.  ........+.  .++..++.|+.+       ..+.+||+.+.. 
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-  184 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNE-  184 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTE-
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCc-
Confidence            677777777553     57889988775433211  1111112222  245566665532       357888887642 


Q ss_pred             eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640         487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGS  560 (616)
Q Consensus       487 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s  560 (616)
                       ................+.  .++..++.|+.+     ..+.+||..+.. ..+..+.........+  .-++++++.|+
T Consensus       185 -W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG  259 (302)
T 2xn4_A          185 -WTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGG  259 (302)
T ss_dssp             -EEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECC
T ss_pred             -EEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECC
Confidence             111111111111111122  256777777764     468899987642 2221111111111222  23677778877


Q ss_pred             CCC-----cEEEecCCcCe
Q psy3640         561 QDT-----TCRLWSTESGE  574 (616)
Q Consensus       561 ~dg-----~i~iwd~~~~~  574 (616)
                      .++     .+.+||+++.+
T Consensus       260 ~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          260 DDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BCSSSBCCCEEEEETTTTE
T ss_pred             cCCCcccccEEEEcCCCCe
Confidence            653     48888887664

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.05  E-value=0.026  Score=63.71  Aligned_cols=219  Identities=11%  Similarity=0.161  Sum_probs=132.3

Q ss_pred             CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640         293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF  372 (616)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~  372 (616)
                      .+|.|.|+.++..+..-+-.....-.+|..+.++.-. ..++.+||+++.+.+.+..- ..+|.--.|-.+. .|+..+ 
T Consensus        48 ~~vvIidl~~~~~~~rrpi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-  123 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-  123 (1630)
T ss_pred             ceEEEEECCCCCCcccccccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-
Confidence            4788888888766544444444456889888887765 78899999999888887764 4467777776553 344333 


Q ss_pred             CCcEEEEecccccCCcccccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEe-------CCCcEEEEeCCC
Q psy3640         373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSS-------LDGTAKLWDVRT  441 (616)
Q Consensus       373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~  441 (616)
                      +..|.-|++...               ..|...+..|    ...|..-..+++.++++..+       ..|.+.+|..+.
T Consensus       124 ~~aVyHW~~~~~---------------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er  188 (1630)
T 1xi4_A          124 DNAVYHWSMEGE---------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  188 (1630)
T ss_pred             CCeEEEeccCCC---------------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence            568999999631               1222222222    34555666677777766433       347888998765


Q ss_pred             CeEEEEeecCCCCEEEEEEc--CC-CCEEEEEeC---CCcEEEEecCCce--------eeeeEEeccCCCeeeEEEEEEc
Q psy3640         442 MCCFYTLKNHEDEVLDIAFD--YS-GSKLATASS---DQTANLWTVGGAV--------ELLQTFYGHSNEVSKVLDIAFD  507 (616)
Q Consensus       442 ~~~~~~~~~~~~~v~~l~~~--~~-~~~l~~~~~---dg~i~iwd~~~~~--------~~~~~~~~~~~~~~~i~~~~~s  507 (616)
                      +. .+.+.+|......+...  +. ...++.+..   .+.+++-++....        +....+........--.++..+
T Consensus       189 ~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs  267 (1630)
T 1xi4_A          189 KV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS  267 (1630)
T ss_pred             cc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec
Confidence            43 33455554433333222  11 122222221   2688888885430        1111122221112223467788


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCce
Q psy3640         508 YSGSKLATASSDQTAKLWTVGGAV  531 (616)
Q Consensus       508 ~~~~~l~~~~~dg~i~vwd~~~~~  531 (616)
                      +....+...+.-|.+.+||+.++.
T Consensus       268 ~k~g~iy~itk~G~~~~~d~~t~~  291 (1630)
T 1xi4_A          268 EKHDVVFLITKYGYIHLYDLETGT  291 (1630)
T ss_pred             cccCEEEEEecCceEEEEecccch
Confidence            888899999999999999998863

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.04  E-value=0.063  Score=51.22  Aligned_cols=225  Identities=7%  Similarity=0.003  Sum_probs=107.3

Q ss_pred             EEEEEeC--CCcEEEEECCCCceeEE--eecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEecccccCCcccccccc
Q psy3640         324 TFCSCSM--DHTARIFNTNSGQEMHT--LKAHTGPVISLQFSSDRNMLITGSFD----SSIVVWDIQYQFGTRNAYAEST  395 (616)
Q Consensus       324 ~l~~~~~--dg~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~g~~d----g~i~iwd~~~~~~~~~~~~~~~  395 (616)
                      .++.|+.  ...+..||..+.+-...  +.........+.+  ++.+++.|+.+    ..+.+||.....          
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~----------   81 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDS----------   81 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTE----------
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCe----------
Confidence            3444443  34677888776543221  1111111122222  55677777654    567777775321          


Q ss_pred             cccCCcceEEEecCccceeEEEEccCCCEEEEEeCC------CcEEEEeCCCCeEEEEeecCC--CCEEEEEEcCCCCEE
Q psy3640         396 YRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD------GTAKLWDVRTMCCFYTLKNHE--DEVLDIAFDYSGSKL  467 (616)
Q Consensus       396 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--~~v~~l~~~~~~~~l  467 (616)
                          ...+..+.......  .+...++.+++.|+.+      ..+.+||..+.+-...-....  .....+.  .++..+
T Consensus        82 ----W~~~~~~p~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy  153 (306)
T 3ii7_A           82 ----WYSKLGPPTPRDSL--AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIY  153 (306)
T ss_dssp             ----EEEEECCSSCCBSC--EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEE
T ss_pred             ----EEECCCCCccccce--eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEE
Confidence                11111111111111  1222367777777755      458899998875433211111  1112222  255566


Q ss_pred             EEEeC---------CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-E
Q psy3640         468 ATASS---------DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-E  532 (616)
Q Consensus       468 ~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~  532 (616)
                      +.|+.         -..+.+||+.+..  .............-..+.+  +++.++.|+.+     ..+.+||+.+.. .
T Consensus       154 v~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  229 (306)
T 3ii7_A          154 VCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK  229 (306)
T ss_dssp             EECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE
T ss_pred             EECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE
Confidence            66543         3458888887642  1222111111111111222  56677777653     468889987641 2


Q ss_pred             EeEEeeccccCEEEEEEecCCCEEEEEECC-----CcEEEecCCcCe
Q psy3640         533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQD-----TTCRLWSTESGE  574 (616)
Q Consensus       533 ~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iwd~~~~~  574 (616)
                      .+..+.........+.+  ++++++.|+.+     ..+.+||+++.+
T Consensus       230 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          230 MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            22111111112223333  67788888754     458888887754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.04  E-value=0.052  Score=51.80  Aligned_cols=186  Identities=10%  Similarity=0.055  Sum_probs=95.1

Q ss_pred             cCCCEEEEEeCC----CcEEEEeCCCCeEEEEeecC--CCCEEEEEEcCCCCEEEEEeCC------CcEEEEecCCceee
Q psy3640         420 FSNSMIASSSLD----GTAKLWDVRTMCCFYTLKNH--EDEVLDIAFDYSGSKLATASSD------QTANLWTVGGAVEL  487 (616)
Q Consensus       420 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~  487 (616)
                      .++.+++.|+.+    ..+.+||..+.+-...-...  ......+.+  ++..++.|+.+      ..+.+||..+..  
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--  129 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--  129 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--
Confidence            366777777754    56889999887543322111  111222222  56666777654      458888887642  


Q ss_pred             eeEEeccCCCeeeEEEEEEcCCCCEEEEEeC---------CCcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEE
Q psy3640         488 LQTFYGHSNEVSKVLDIAFDYSGSKLATASS---------DQTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVL  557 (616)
Q Consensus       488 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~  557 (616)
                      ................+.  .+++.++.|+.         ...+.+||..+.. ..+..+......-..+.  -++++++
T Consensus       130 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v  205 (306)
T 3ii7_A          130 WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFA  205 (306)
T ss_dssp             EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred             eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEE
Confidence            111111111111111112  25666676654         3458899987642 11111111111112222  2667777


Q ss_pred             EEECC-----CcEEEecCCcCe--eeeEeccCcccEEEEEEeeCCCEEEEeeCC-----CcEEEcccCCC
Q psy3640         558 SGSQD-----TTCRLWSTESGE--CIQVLKAHEDDVFSCGFNYNGDTIITASKD-----NTCCIWRSMNR  615 (616)
Q Consensus       558 s~s~d-----g~i~iwd~~~~~--~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D-----g~i~vW~~~~~  615 (616)
                      .|+.+     ..+.+||+.+.+  .+..+.........+.  -++.+++.|+.+     +.+.+||+.++
T Consensus       206 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          206 VGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            77653     358889987764  2322222222222222  267788888854     45788887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.01  E-value=0.17  Score=49.13  Aligned_cols=187  Identities=13%  Similarity=0.084  Sum_probs=110.1

Q ss_pred             cceeEEEEccCCCEEEEE------------eCCCcEEEEeCCC--CeEE-EEeec-----CCCCEEEEEEcC--CCC-EE
Q psy3640         411 QEISNCLFNFSNSMIASS------------SLDGTAKLWDVRT--MCCF-YTLKN-----HEDEVLDIAFDY--SGS-KL  467 (616)
Q Consensus       411 ~~i~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~l~~~~--~~~-~l  467 (616)
                      ...-.++..++|..++++            ..+|.|.++|..+  .+.. ..+.+     ..-....+.+.+  ++. +|
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            344566777876555544            2689999999873  2211 12222     123677777755  343 34


Q ss_pred             EEE-eC--CCcEEEEecCCcee---eeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-----------------CCcEEE
Q psy3640         468 ATA-SS--DQTANLWTVGGAVE---LLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-----------------DQTAKL  524 (616)
Q Consensus       468 ~~~-~~--dg~i~iwd~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------------dg~i~v  524 (616)
                      +++ ..  +.++.+|++.....   ....+.+  ........+.+.++|.+.++...                 .|.+.-
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECC--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEecccc--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            444 33  45777877654322   2222322  34456788999999998887641                 244555


Q ss_pred             EecCCceEEeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEecCCc-Cee--eeEeccCcccEEEEEEee-CCCEEE
Q psy3640         525 WTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLWSTES-GEC--IQVLKAHEDDVFSCGFNY-NGDTII  599 (616)
Q Consensus       525 wd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~h~~~V~~l~~s~-~~~~l~  599 (616)
                      ++...    ...+...-...+.++||||++.|..+. ..+.|..|++.. ++.  ...+. ..+..-.+++.+ +|++.+
T Consensus       208 ~d~~~----~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwv  282 (355)
T 3sre_A          208 YSPND----VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWV  282 (355)
T ss_dssp             ECTTC----CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEE
T ss_pred             EECCe----EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEE
Confidence            55432    122222335678999999998877765 467899999863 332  12332 234456788888 588877


Q ss_pred             EeeCC
Q psy3640         600 TASKD  604 (616)
Q Consensus       600 t~s~D  604 (616)
                      ++..+
T Consensus       283 a~~~~  287 (355)
T 3sre_A          283 GCHPN  287 (355)
T ss_dssp             EEESC
T ss_pred             EecCC
Confidence            66544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.92  E-value=0.35  Score=47.14  Aligned_cols=236  Identities=10%  Similarity=0.070  Sum_probs=125.6

Q ss_pred             CcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEE---e----eCCCCcEEEEEEeCC---CCCEEEEEEC-------
Q psy3640         230 NVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICT---Y----RGHQNVVYAVAFSEP---YGDKILTGSF-------  291 (616)
Q Consensus       230 ~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~---~----~~h~~~V~~l~~~~~---~~~~l~s~s~-------  291 (616)
                      .....|+|.|+++ ++++...|.|++++.. +.....   +    .........++++|.   ++...++-+.       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            4568999999999 8888899999999853 332111   1    122346789999832   3444444333       


Q ss_pred             CCeEEEEeCCCc--c--eeEE-e---e-----ec-eeeEEEcCCCCEEEEEeCC-------------CcEEEEECCCC--
Q psy3640         292 DKTLKLWASAKE--E--CIQT-Y---R-----GH-SAEVTFSPDQSTFCSCSMD-------------HTARIFNTNSG--  342 (616)
Q Consensus       292 dg~i~iwd~~~~--~--~~~~-~---~-----~~-~~~v~~~~~~~~l~~~~~d-------------g~i~i~d~~~~--  342 (616)
                      ...|..++....  .  .... +   .     .| ...++|.|++.+.++.+..             |.|.-++....  
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235666665432  1  1111 1   1     11 3458999999665554332             45666666532  


Q ss_pred             ------------ceeEEeecCCcCEEEEEEcC-CCCEEEEEECC--CcEEEEecccccCC----cc---cccc-------
Q psy3640         343 ------------QEMHTLKAHTGPVISLQFSS-DRNMLITGSFD--SSIVVWDIQYQFGT----RN---AYAE-------  393 (616)
Q Consensus       343 ------------~~~~~~~~~~~~v~~l~~~~-~~~~l~~g~~d--g~i~iwd~~~~~~~----~~---~~~~-------  393 (616)
                                  ..+.. .++. ....++|+| +++ |.++...  +.=.|.-+.....-    ..   ....       
T Consensus       177 ~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNA-LWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             TTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTE-EEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCC-EEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence                        11111 2333 357899999 554 4444322  11222222211100    00   0000       


Q ss_pred             -cccccCCcceEEEecCccceeEEEEc-------cCCCEEEEEeCCCcEEEEeCCCCeEEEEe---ecCCCCEEEEEEcC
Q psy3640         394 -STYRASHKPIHILTGHSQEISNCLFN-------FSNSMIASSSLDGTAKLWDVRTMCCFYTL---KNHEDEVLDIAFDY  462 (616)
Q Consensus       394 -~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~l~~~~  462 (616)
                       ........+...+..+ .....++|.       .++.++++....+.|...++..++.....   ......+..+++.|
T Consensus       254 ~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             BSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence             0000112333334333 345667765       35677777767788888887766443322   22345799999999


Q ss_pred             CCCEEEEE
Q psy3640         463 SGSKLATA  470 (616)
Q Consensus       463 ~~~~l~~~  470 (616)
                      +|.+.++.
T Consensus       333 dG~lyv~t  340 (353)
T 2g8s_A          333 DGYLYVLT  340 (353)
T ss_dssp             TSCEEEEE
T ss_pred             CCcEEEEE
Confidence            99866654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.71  E-value=0.07  Score=60.34  Aligned_cols=251  Identities=12%  Similarity=0.146  Sum_probs=133.7

Q ss_pred             CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcc
Q psy3640         332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ  411 (616)
Q Consensus       332 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (616)
                      .+|.|.|+..+..+....   -.--+.-.+|..+.++.-. ..++.++|+..                ...+....-.. 
T Consensus        48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~----------------k~klks~~~~e-  106 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEM----------------KSKMKAHTMTD-  106 (1630)
T ss_pred             ceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHH----------------hhhhcccccCC-
Confidence            368888888766542211   1223445678777776664 78999999973                22222222222 


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEeCCC-CeEEEEeecC----CCCEEEEEEcCCCCEEEEEe-------CCCcEEEE
Q psy3640         412 EISNCLFNFSNSMIASSSLDGTAKLWDVRT-MCCFYTLKNH----EDEVLDIAFDYSGSKLATAS-------SDQTANLW  479 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~-------~dg~i~iw  479 (616)
                      +|.-=.|-. .+.|+..+ +..|+-|++.. ..+...+..|    ...|..-..+++.++++..+       -.|.+.+|
T Consensus       107 ~VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLy  184 (1630)
T 1xi4_A          107 DVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY  184 (1630)
T ss_pred             CceEEEecC-CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeee
Confidence            222222322 22333333 34799999964 2344444433    45688888889988877544       34788888


Q ss_pred             ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC---CCcEEEEecCCc----eE----EeEEeec---cccCEE
Q psy3640         480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS---DQTAKLWTVGGA----VE----LLQTFYG---HSNEVS  545 (616)
Q Consensus       480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~----~~----~~~~~~~---h~~~v~  545 (616)
                      .....  ..+.+.+|......+.--...+....+..+..   .+.++|.++...    ..    ....+..   -.+-..
T Consensus       185 S~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv  262 (1630)
T 1xi4_A          185 SVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV  262 (1630)
T ss_pred             ecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcce
Confidence            87653  33333343332211100000111112222211   367888877442    01    1111111   123345


Q ss_pred             EEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcE
Q psy3640         546 KVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTC  607 (616)
Q Consensus       546 ~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i  607 (616)
                      ++..|+.-..+..-+.-|.+.++|++||.++..-+-...+|...+-.....-++.....|.|
T Consensus       263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v  324 (1630)
T 1xi4_A          263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (1630)
T ss_pred             EEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence            67777777788888889999999999999886555445555544443332233333344443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.71  E-value=0.067  Score=51.14  Aligned_cols=185  Identities=9%  Similarity=0.015  Sum_probs=92.6

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCc
Q psy3640         421 SNSMIASSSL----D-----GTAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGA  484 (616)
Q Consensus       421 ~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~  484 (616)
                      ++.+++.|+.    +     ..+.+||..+.+-...-.  ........+.+  ++..++.|+.+     ..+.+||..+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            5667777665    2     368899988775332211  11111222222  55666666533     35778888664


Q ss_pred             eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEE
Q psy3640         485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLS  558 (616)
Q Consensus       485 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s  558 (616)
                      .-  ............-..+.+  ++..++.|+.+     ..+.+||..+.. ..+..+.........+.+  ++++++.
T Consensus       148 ~W--~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  221 (308)
T 1zgk_A          148 EW--HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA  221 (308)
T ss_dssp             EE--EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             eE--eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE
Confidence            21  111111111111112222  66777777654     458889886632 111111111111222222  6777777


Q ss_pred             EECC-----CcEEEecCCcCeee--eEeccCcccEEEEEEeeCCCEEEEeeCC-----CcEEEcccCCC
Q psy3640         559 GSQD-----TTCRLWSTESGECI--QVLKAHEDDVFSCGFNYNGDTIITASKD-----NTCCIWRSMNR  615 (616)
Q Consensus       559 ~s~d-----g~i~iwd~~~~~~~--~~~~~h~~~V~~l~~s~~~~~l~t~s~D-----g~i~vW~~~~~  615 (616)
                      |+.+     ..+.+||+.+.+-.  ..+.........+  .-++++++.|+.+     ..+.+||+.++
T Consensus       222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT--VHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE--EECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            7654     45899998876432  2222111111122  2367788888754     35777887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.68  E-value=0.21  Score=48.94  Aligned_cols=147  Identities=12%  Similarity=0.132  Sum_probs=96.1

Q ss_pred             cCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecC----ccceeEEEEccCCCEEEEEeCCCcEEE
Q psy3640         361 SSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH----SQEISNCLFNFSNSMIASSSLDGTAKL  436 (616)
Q Consensus       361 ~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~dg~i~i  436 (616)
                      ..+|..++++- ++.||.-++..                ...-+.+...    -..+..+..+|+|++|+..+.. .|.+
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~----------------~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~V   90 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLT----------------DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFV   90 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTT----------------CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEE
T ss_pred             EcCCCEEEEEE-CCEEEEEECCC----------------CCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEE
Confidence            34555565554 56777777652                2222233222    2367889999999999998754 7888


Q ss_pred             EeCCCCe------------EEEEeec------CCCCEEEEEEcCC---CCEEEEEeCCCcEEEEecCCceeeeeEEe---
Q psy3640         437 WDVRTMC------------CFYTLKN------HEDEVLDIAFDYS---GSKLATASSDQTANLWTVGGAVELLQTFY---  492 (616)
Q Consensus       437 wd~~~~~------------~~~~~~~------~~~~v~~l~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---  492 (616)
                      -.+..+.            ..+.+.-      ...+|..+.|+|-   +..|++-..|+.|++||+.........+.   
T Consensus        91 v~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~  170 (452)
T 3pbp_A           91 MEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPN  170 (452)
T ss_dssp             EECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCC
T ss_pred             EEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccc
Confidence            8776221            1122322      2567999999995   56899999999999999986322111221   


Q ss_pred             ---ccCCCeeeEEEEEEcCCCCEEEEEe--CCCcEEEE
Q psy3640         493 ---GHSNEVSKVLDIAFDYSGSKLATAS--SDQTAKLW  525 (616)
Q Consensus       493 ---~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~vw  525 (616)
                         +.......+.+++|.+++-.|.+..  .+|.|+-.
T Consensus       171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          171 NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence               2223336688999999988888866  77877544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.66  E-value=0.31  Score=46.57  Aligned_cols=147  Identities=11%  Similarity=0.026  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCC--------CcEEEEeCCCCeEEEEeecCCCCE-EEEEEcCCCCEEEEEeC-C-----CcEEEEecCCce
Q psy3640         421 SNSMIASSSLD--------GTAKLWDVRTMCCFYTLKNHEDEV-LDIAFDYSGSKLATASS-D-----QTANLWTVGGAV  485 (616)
Q Consensus       421 ~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~  485 (616)
                      ++.+++.|+.+        ..+.+||..+.+-...-....... .+++. .+++.++.|+. +     ..+.+||..+..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            56677777632        358899998875332211111111 11222 34566666665 2     468888887642


Q ss_pred             eeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640         486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ-----TAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSG  559 (616)
Q Consensus       486 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~  559 (616)
                        ................+  .-+++.++.|+.++     .+.+||..+.. ..+..+.........+.  -++++++.|
T Consensus       177 --W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~G  250 (315)
T 4asc_A          177 --WKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIG  250 (315)
T ss_dssp             --EEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEE
T ss_pred             --EEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEEC
Confidence              11111111111111112  22667777877654     57888887641 12211111111122222  366777777


Q ss_pred             ECCC--------------cEEEecCCcCe
Q psy3640         560 SQDT--------------TCRLWSTESGE  574 (616)
Q Consensus       560 s~dg--------------~i~iwd~~~~~  574 (616)
                      +.++              .+.+||+++.+
T Consensus       251 G~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          251 GFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CccccCcCCccccccccCcEEEecCCCCh
Confidence            7532              36677877654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.54  E-value=0.091  Score=50.17  Aligned_cols=146  Identities=8%  Similarity=0.060  Sum_probs=72.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCceeee
Q psy3640         421 SNSMIASSSLD-----GTAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-----QTANLWTVGGAVELL  488 (616)
Q Consensus       421 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~  488 (616)
                      ++++++.|+.+     ..+.+||..+.+-...-.  .....-..+.+  ++..++.|+.+     ..+.+||+.+..-  
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW--  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE--
Confidence            56677776643     358889988765432211  11111122222  55666666544     4588888866421  


Q ss_pred             eEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEECC
Q psy3640         489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSD-----QTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD  562 (616)
Q Consensus       489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d  562 (616)
                      ...............+.+  ++..++.|+.+     ..+.+||+.+.. ..+..+.........+.  -++++++.|+.+
T Consensus       197 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~  272 (308)
T 1zgk_A          197 RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYD  272 (308)
T ss_dssp             EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred             eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcC
Confidence            111111111111112222  66777777764     568999987642 11111111111112222  266777777754


Q ss_pred             -----CcEEEecCCcCe
Q psy3640         563 -----TTCRLWSTESGE  574 (616)
Q Consensus       563 -----g~i~iwd~~~~~  574 (616)
                           ..+.+||+++.+
T Consensus       273 ~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          273 GHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SSCBCCEEEEEETTTTE
T ss_pred             CCcccceEEEEcCCCCE
Confidence                 346777776653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.50  E-value=0.16  Score=48.57  Aligned_cols=177  Identities=8%  Similarity=0.013  Sum_probs=88.1

Q ss_pred             CcEEEEeCCCCceEE-EeeCCCCcEEEEEEeCCCCCEEEEEEC-----C------CeEEEEeCCCcceeEEeeece--e-
Q psy3640         250 RTCKLWDIKSGHEIC-TYRGHQNVVYAVAFSEPYGDKILTGSF-----D------KTLKLWASAKEECIQTYRGHS--A-  314 (616)
Q Consensus       250 ~~I~iwd~~~~~~~~-~~~~h~~~V~~l~~~~~~~~~l~s~s~-----d------g~i~iwd~~~~~~~~~~~~~~--~-  314 (616)
                      ..+.+||..+++-.. .+..........+.. .++..++.|+.     .      ..+..||..+.+....-....  . 
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVT-KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEEC-TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEE-ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence            678999998887432 222111122222222 56788888874     1      126778888775432211111  0 


Q ss_pred             eEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEE--eecCCcCEEEEEEcCCCCEEEEEEC-C-----CcEEE
Q psy3640         315 EVTFSPDQSTFCSCSMD--------HTARIFNTNSGQEMHT--LKAHTGPVISLQFSSDRNMLITGSF-D-----SSIVV  378 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~g~~-d-----g~i~i  378 (616)
                      ..+..-++..++.|+.+        ..+.+||..+.+-...  +.........+.  .++.+++.|+. +     ..+.+
T Consensus        92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~  169 (315)
T 4asc_A           92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCV  169 (315)
T ss_dssp             CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEE
T ss_pred             eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEE
Confidence            11122256666666632        4588999887643221  111111112222  25567777765 2     35788


Q ss_pred             EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC-----cEEEEeCCCCeEE
Q psy3640         379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG-----TAKLWDVRTMCCF  445 (616)
Q Consensus       379 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~  445 (616)
                      ||.....              ...+..+..  ......+...++++++.|+.++     .+.+||+.+.+-.
T Consensus       170 yd~~~~~--------------W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          170 YDPKKFE--------------WKELAPMQT--ARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             EETTTTE--------------EEECCCCSS--CCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             EeCCCCe--------------EEECCCCCC--chhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            8875321              000000111  1111112223677788887654     5888999887543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.45  E-value=0.7  Score=44.54  Aligned_cols=245  Identities=12%  Similarity=0.050  Sum_probs=132.0

Q ss_pred             EEeccCCcEEEEEEcCCCCEEEEEC-CCcEEEEeCCCCceEE--Ee----eCCCCcEEEEEEeCC---CCCEEEEEE--C
Q psy3640         224 TYRGHQNVVYAVAFSEPYGCLTGSY-DRTCKLWDIKSGHEIC--TY----RGHQNVVYAVAFSEP---YGDKILTGS--F  291 (616)
Q Consensus       224 ~~~~h~~~I~~l~fs~~~~lls~s~-d~~I~iwd~~~~~~~~--~~----~~h~~~V~~l~~~~~---~~~~l~s~s--~  291 (616)
                      .+...-.....|+|.|++.++++.. .|.|++++..+++...  .+    .........|+++|.   ++...++-+  .
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            4444445678999999999888887 8999999876665422  22    123457889999842   244444322  3


Q ss_pred             CCeEEEEeCCCc----------cee-EEee---ec-eeeEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-
Q psy3640         292 DKTLKLWASAKE----------ECI-QTYR---GH-SAEVTFSPDQSTFCSCSM-------------DHTARIFNTNSG-  342 (616)
Q Consensus       292 dg~i~iwd~~~~----------~~~-~~~~---~~-~~~v~~~~~~~~l~~~~~-------------dg~i~i~d~~~~-  342 (616)
                      +..|.-|....+          +.+ ..+.   .| ...+.|.|++.+.++.+.             .|.|.-.+.... 
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            455666655441          111 1121   12 235899999987777542             355555554422 


Q ss_pred             --------ceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCC--cccccccccccCCcceEEEecCcc
Q psy3640         343 --------QEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGT--RNAYAESTYRASHKPIHILTGHSQ  411 (616)
Q Consensus       343 --------~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  411 (616)
                              ..+.. .+|.+ ...++|+|+|.+.++-. .++.-.|--+.....-  ..............++..+..+..
T Consensus       186 p~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          186 APGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             CTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             cCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence                    11222 24443 36899999877555432 2332222222211100  000000001112334444444333


Q ss_pred             ceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640         412 EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC----FYTLKNHEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       412 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~l~~~~  471 (616)
                      ....++|. ++..+......+.|....+.....    ...+......+.+++..|+|.++++.+
T Consensus       264 ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            45566665 456666666666676666654432    222333456899999999997766544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.37  E-value=1  Score=45.68  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecCCceE------------EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEec
Q psy3640         503 DIAFDYSGSKLATASS-DQTAKLWTVGGAVE------------LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS  569 (616)
Q Consensus       503 ~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd  569 (616)
                      .+..+|||+++++++. +.++.++|+..-..            ...... -.-.....+|.++|.-..|-.-|..|.-|+
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            5789999999887765 88999999863111            111111 234567889999995555666899999999


Q ss_pred             CCcC----------eeeeEeccCcccEEEEEE------eeCCCEEEEee
Q psy3640         570 TESG----------ECIQVLKAHEDDVFSCGF------NYNGDTIITAS  602 (616)
Q Consensus       570 ~~~~----------~~~~~~~~h~~~V~~l~~------s~~~~~l~t~s  602 (616)
                      +...          ..+..+..|-.+- .+.-      .|||++|++..
T Consensus       406 i~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          406 MEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             HHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred             ccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence            9764          4566776665533 3322      46788888864

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.36  E-value=0.24  Score=48.61  Aligned_cols=148  Identities=13%  Similarity=0.146  Sum_probs=96.0

Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee-------
Q psy3640         419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH----EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL-------  487 (616)
Q Consensus       419 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------  487 (616)
                      ..++..++.+- ++.||.-++......+.+...    -..|..+..+|+|++||..+.. .|.|-.+..+...       
T Consensus        29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHH
T ss_pred             EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccc
Confidence            44555565554 367887787754444455433    2368889999999999998654 7888887632110       


Q ss_pred             ----eeEEeccC---CCeeeEEEEEEcCC---CCEEEEEeCCCcEEEEecCCceEEeEEee---------ccccCEEEEE
Q psy3640         488 ----LQTFYGHS---NEVSKVLDIAFDYS---GSKLATASSDQTAKLWTVGGAVELLQTFY---------GHSNEVSKVS  548 (616)
Q Consensus       488 ----~~~~~~~~---~~~~~i~~~~~s~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------~h~~~v~~l~  548 (616)
                          ...+.-..   .....|..+.|+|-   +..|++-..|+.|++||+.........+.         .....|.+++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~  186 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLE  186 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEE
Confidence                11111111   12456899999995   56899999999999999975221111221         2236789999


Q ss_pred             EecCCCEEEEEE--CCCcEEEe
Q psy3640         549 FHPTGKLVLSGS--QDTTCRLW  568 (616)
Q Consensus       549 ~spdg~~l~s~s--~dg~i~iw  568 (616)
                      |.+++-.|...+  ..|.|+-.
T Consensus       187 Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          187 FSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ECTTSSCEEEEECTTSCEEEEE
T ss_pred             EcCCCcEEEEEecCCCCCEEEE
Confidence            999887666644  77877643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.30  E-value=0.78  Score=43.43  Aligned_cols=209  Identities=8%  Similarity=0.036  Sum_probs=111.5

Q ss_pred             CCEEEEEE--CCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCC--------------CcEEEEECCCCceeE
Q psy3640         283 GDKILTGS--FDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMD--------------HTARIFNTNSGQEMH  346 (616)
Q Consensus       283 ~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~~~~  346 (616)
                      +..+....  .++.|...+.......+....  .+--+++++..|+-....              ..|+..++..++...
T Consensus        25 g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~  102 (302)
T 3s25_A           25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV  102 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE
T ss_pred             CCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE
Confidence            45555443  244555555544332222221  123467888888766543              357777777654332


Q ss_pred             EeecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640         347 TLKAHTGPVISLQFSSDRNMLITGS--FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM  424 (616)
Q Consensus       347 ~~~~~~~~v~~l~~~~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  424 (616)
                       +..  ..  +..|++++++|+-..  .++.-.||.+..               .+.....+..+..    .+++++++.
T Consensus       103 -l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~---------------dGs~~~~lt~~~~----~~~~~~g~~  158 (302)
T 3s25_A          103 -LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRI---------------DGEEKKKIKNHYL----FTCNTSDRY  158 (302)
T ss_dssp             -EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEET---------------TSCCCEEEESSCC----CCSEEETTE
T ss_pred             -eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEEC---------------CCCCeEEEeCCCc----eEeeEECCE
Confidence             221  12  236677888888776  344445554432               2222233333322    345677887


Q ss_pred             EEEEeC-CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeEEeccCCCeeeE
Q psy3640         425 IASSSL-DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ--TANLWTVGGAVELLQTFYGHSNEVSKV  501 (616)
Q Consensus       425 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~i  501 (616)
                      |.-.+. ...|...++..+.....+.   +... ..++|++.+|+-....+  .|..-++.+...  ..+...     .+
T Consensus       159 iy~t~~g~~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--~~Lt~~-----~~  227 (302)
T 3s25_A          159 FYYNNPKNGQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP--VVLTEA-----NI  227 (302)
T ss_dssp             EEEECTTTCCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC--EECSCS-----CE
T ss_pred             EEEEeCCCceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe--EEEeCC-----Cc
Confidence            776665 5778888887765443332   2222 34568888888765443  455555554322  222111     11


Q ss_pred             EEEEEcCCCCEEEEEeC--CCcEEEEecCCc
Q psy3640         502 LDIAFDYSGSKLATASS--DQTAKLWTVGGA  530 (616)
Q Consensus       502 ~~~~~s~~~~~l~~~~~--dg~i~vwd~~~~  530 (616)
                        ..++|++.+|..+..  .+.|..-++...
T Consensus       228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          228 --EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             --EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             --ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence              347888888876543  356666666653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.24  E-value=0.63  Score=47.01  Aligned_cols=109  Identities=8%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee-eeeEEecc---CCCeeeEEEEEEcCC---CCEEEEEeC------
Q psy3640         452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE-LLQTFYGH---SNEVSKVLDIAFDYS---GSKLATASS------  518 (616)
Q Consensus       452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~---~~~~~~i~~~~~s~~---~~~l~~~~~------  518 (616)
                      -.....|+|.|+|+++++-...+.|.+++..++.. ....+...   ......+..++++|+   +..|.+...      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567999999998776654445688887643322 22222111   112345778999996   555554442      


Q ss_pred             -------CCcEEEEecCCc------eE-EeEEee-ccccCEEEEEEecCCCEEEEEE
Q psy3640         519 -------DQTAKLWTVGGA------VE-LLQTFY-GHSNEVSKVSFHPTGKLVLSGS  560 (616)
Q Consensus       519 -------dg~i~vwd~~~~------~~-~~~~~~-~h~~~v~~l~~spdg~~l~s~s  560 (616)
                             ...|.-++....      .+ ++..+. ........|+|.|||.+.++.+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                   234555554321      11 121122 1223578999999998777644

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.088  Score=50.59  Aligned_cols=181  Identities=14%  Similarity=0.088  Sum_probs=105.0

Q ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEecc-CCcEEEEEEc---CCCCEEEE--ECCCcEEEEeCCCCceEEEeeC----
Q psy3640         199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGH-QNVVYAVAFS---EPYGCLTG--SYDRTCKLWDIKSGHEICTYRG----  268 (616)
Q Consensus       199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h-~~~I~~l~fs---~~~~lls~--s~d~~I~iwd~~~~~~~~~~~~----  268 (616)
                      +..++.++.||.|.-.|.++|+.+-++... ..++....-.   .++..+.+  +.||.+..++..+|.....+..    
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            457899999999999999999999988754 1222221100   13344444  5899999999998866554431    


Q ss_pred             CCCcEEE---EEE-e---CCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee--------eEEEc-------CCCCEEE
Q psy3640         269 HQNVVYA---VAF-S---EPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA--------EVTFS-------PDQSTFC  326 (616)
Q Consensus       269 h~~~V~~---l~~-~---~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~-------~~~~~l~  326 (616)
                      ...++..   ... .   -..+..+++|+.+|.+...|+.+|+.+..+.....        ..+..       ..+..++
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence            2222221   000 0   01467889999999999999999999988864321        11111       1235677


Q ss_pred             EEeCCCcEEEEECCCCceeEEee-----cCCcC--EE-EEEEcCCCCEEEEEECCCcEEEEecc
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLK-----AHTGP--VI-SLQFSSDRNMLITGSFDSSIVVWDIQ  382 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~--v~-~l~~~~~~~~l~~g~~dg~i~iwd~~  382 (616)
                      .+..+..+.+.+ ++|+ ...+.     .....  +. ....+.++.+ ++++.||.|.-+|..
T Consensus       170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~  230 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD  230 (339)
T ss_dssp             EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred             EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence            777666666666 4453 22211     00000  00 0000123444 457778888888865

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.13  E-value=0.91  Score=42.96  Aligned_cols=162  Identities=10%  Similarity=0.030  Sum_probs=90.5

Q ss_pred             EEEccCCCEEEEEeCC--------------CcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe--CCCcEEEE
Q psy3640         416 CLFNFSNSMIASSSLD--------------GTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS--SDQTANLW  479 (616)
Q Consensus       416 ~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~--~dg~i~iw  479 (616)
                      --+++++..|+-....              ..|+..++...+.. .+..  ..  ...++++++.|+-..  .++.-.||
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDP--DP--CIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEEC--SC--EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eeec--CC--ccEEEEeCCEEEEEeecCCCCceEE
Confidence            3457788877766543              35777777665432 2221  12  236677888888765  34444444


Q ss_pred             --ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEE
Q psy3640         480 --TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLV  556 (616)
Q Consensus       480 --d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l  556 (616)
                        ++.+.  ....+..+..       .+++++++.|+-.+. ...|.+.++.+.... ....   +... ..++|++.+|
T Consensus       133 ~~~~dGs--~~~~lt~~~~-------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~-~l~~---~~~~-~~~~P~g~~i  198 (302)
T 3s25_A          133 RIRIDGE--EKKKIKNHYL-------FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA-LFYD---CNCY-KPVVLDDTNV  198 (302)
T ss_dssp             EEETTSC--CCEEEESSCC-------CCSEEETTEEEEECTTTCCEEEEETTTTEEE-EEEC---SCEE-EEEEEETTEE
T ss_pred             EEECCCC--CeEEEeCCCc-------eEeeEECCEEEEEeCCCceEEEEECCCCCEE-EEeC---CCcc-ceeeecCCEE
Confidence              44432  2222322221       345778888886665 678888888775332 2222   2222 3467999988


Q ss_pred             EEEECC--CcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEe
Q psy3640         557 LSGSQD--TTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA  601 (616)
Q Consensus       557 ~s~s~d--g~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~  601 (616)
                      +-...+  ..|..-++..+. ...+..  ..+.  .|+|++++|.-+
T Consensus       199 y~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~--~~~~~g~~Iy~~  240 (302)
T 3s25_A          199 YYMDVNRDNAIVHVNINNPN-PVVLTE--ANIE--HYNVYGSLIFYQ  240 (302)
T ss_dssp             EEEEGGGTTEEEEECSSSCC-CEECSC--SCEE--EEEEETTEEEEE
T ss_pred             EEEEcCCCcEEEEEECCCCC-eEEEeC--CCcc--eEEECCCEEEEE
Confidence            876544  356666665443 333432  2232  367777777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.09  E-value=0.12  Score=50.39  Aligned_cols=145  Identities=8%  Similarity=-0.068  Sum_probs=66.3

Q ss_pred             CcEEEEeCCCCeEEEEeecCC-CCE-EEEEEcCCCCEEEEEeC------CCcEEEEecCCceeeeeEEeccCCCeeeEEE
Q psy3640         432 GTAKLWDVRTMCCFYTLKNHE-DEV-LDIAFDYSGSKLATASS------DQTANLWTVGGAVELLQTFYGHSNEVSKVLD  503 (616)
Q Consensus       432 g~i~iwd~~~~~~~~~~~~~~-~~v-~~l~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~  503 (616)
                      ..+.+||..+.+-...-.... ..- .+++.. ++..++.|+.      ...+..|++...............+......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            468999998765433221111 111 223322 4556666543      2456777763222222222211111111111


Q ss_pred             EEEcCCCCEEEEEeCC----------------------CcEEEEecCCc-eEEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640         504 IAFDYSGSKLATASSD----------------------QTAKLWTVGGA-VELLQTFYGHSNEVSKVSFHPTGKLVLSGS  560 (616)
Q Consensus       504 ~~~s~~~~~l~~~~~d----------------------g~i~vwd~~~~-~~~~~~~~~h~~~v~~l~~spdg~~l~s~s  560 (616)
                      .+...++..++.|+.+                      ..+.+||+.+. ...+..+......-.  +...++++++.|+
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV--SLPWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSE--EEEETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccce--eEEeCCEEEEEee
Confidence            1223356777777632                      25778888653 222322222222222  2334778888888


Q ss_pred             CCC------cEEEecCCcCeeeeEe
Q psy3640         561 QDT------TCRLWSTESGECIQVL  579 (616)
Q Consensus       561 ~dg------~i~iwd~~~~~~~~~~  579 (616)
                      .++      .+.++++++++.+...
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeee
Confidence            653      3555677777766443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.00  E-value=0.43  Score=45.63  Aligned_cols=189  Identities=8%  Similarity=0.018  Sum_probs=92.4

Q ss_pred             EEccCCCEEEEEeC----CC-------cEEEEeCCCCeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCC-------CcE
Q psy3640         417 LFNFSNSMIASSSL----DG-------TAKLWDVRTMCCFYTLK--NHEDEVLDIAFDYSGSKLATASSD-------QTA  476 (616)
Q Consensus       417 ~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~d-------g~i  476 (616)
                      +...++.+++.|+.    ++       .+..||..+.+-...-.  ..........+  ++..++.|+.+       ..+
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence            34456778888873    11       27788988765433211  11111122222  56666676653       246


Q ss_pred             EEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC------CCcEEEEecCCce-EEeEEeeccccCEEEEEE
Q psy3640         477 NLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS------DQTAKLWTVGGAV-ELLQTFYGHSNEVSKVSF  549 (616)
Q Consensus       477 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~  549 (616)
                      .+||..+..  .............- +++ ..++..++.|+.      ...+.+||..+.. ..+..+.........+. 
T Consensus       130 ~~yd~~~~~--W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  204 (318)
T 2woz_A          130 LCYDPVAAK--WSEVKNLPIKVYGH-NVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-  204 (318)
T ss_dssp             EEEETTTTE--EEEECCCSSCEESC-EEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             EEEeCCCCC--EeECCCCCCccccc-EEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-
Confidence            777876532  11111111111111 112 246677777764      2458899987642 22211111111112222 


Q ss_pred             ecCCCEEEEEECC-----CcEEEecCCcCee--eeEeccCcccEEEEEEeeCCCEEEEeeCC--------------CcEE
Q psy3640         550 HPTGKLVLSGSQD-----TTCRLWSTESGEC--IQVLKAHEDDVFSCGFNYNGDTIITASKD--------------NTCC  608 (616)
Q Consensus       550 spdg~~l~s~s~d-----g~i~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l~t~s~D--------------g~i~  608 (616)
                       -++++++.|+.+     ..+.+||+.+.+-  +..+........  +...++++++.|+.+              ..+.
T Consensus       205 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~  281 (318)
T 2woz_A          205 -HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSIS--LVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIW  281 (318)
T ss_dssp             -ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCE--EEEETTEEEEECCBCCBC----CCBCCBCCCEE
T ss_pred             -ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceE--EEEECCEEEEECCeeccCCCCceeccceeeeEE
Confidence             366777777654     3477888876542  222222211111  223467788887754              3577


Q ss_pred             EcccCCC
Q psy3640         609 IWRSMNR  615 (616)
Q Consensus       609 vW~~~~~  615 (616)
                      +||+.++
T Consensus       282 ~yd~~~~  288 (318)
T 2woz_A          282 KYEDDKK  288 (318)
T ss_dssp             EEETTTT
T ss_pred             EEeCCCC
Confidence            7887653

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.80  E-value=0.41  Score=45.72  Aligned_cols=128  Identities=5%  Similarity=0.006  Sum_probs=63.9

Q ss_pred             cEEEEeCCCCceEE-EeeC-CCCcEEEEEEeCCCCCEEEEEEC----CC-------eEEEEeCCCcceeEEe--eece-e
Q psy3640         251 TCKLWDIKSGHEIC-TYRG-HQNVVYAVAFSEPYGDKILTGSF----DK-------TLKLWASAKEECIQTY--RGHS-A  314 (616)
Q Consensus       251 ~I~iwd~~~~~~~~-~~~~-h~~~V~~l~~~~~~~~~l~s~s~----dg-------~i~iwd~~~~~~~~~~--~~~~-~  314 (616)
                      .+..||..+++-.. .+.. ....-.+++ . .++..++.|+.    ++       .+..+|..+.+....-  .... .
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIV-T-QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEE-C-SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEE-E-ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            47888988877443 1221 112222332 2 56778888873    12       1677888776543221  1111 1


Q ss_pred             eEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeEEeecC--CcCEEEEEEcCCCCEEEEEEC------CCcEEEE
Q psy3640         315 EVTFSPDQSTFCSCSMD-------HTARIFNTNSGQEMHTLKAH--TGPVISLQFSSDRNMLITGSF------DSSIVVW  379 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~~~~~~l~~g~~------dg~i~iw  379 (616)
                      ..+..-++..++.|+.+       ..+.+||..+.+-...-...  ...- +++. .++.+++.|+.      -..+.+|
T Consensus       103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~y  180 (318)
T 2woz_A          103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDDKKCTNRVFIY  180 (318)
T ss_dssp             CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred             cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence            11222256677777653       24788888876533221111  1111 1222 35666676654      2357888


Q ss_pred             ecc
Q psy3640         380 DIQ  382 (616)
Q Consensus       380 d~~  382 (616)
                      |+.
T Consensus       181 d~~  183 (318)
T 2woz_A          181 NPK  183 (318)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            875

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.62  E-value=0.37  Score=42.60  Aligned_cols=151  Identities=10%  Similarity=-0.036  Sum_probs=79.6

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC
Q psy3640         353 GPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG  432 (616)
Q Consensus       353 ~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  432 (616)
                      ..+..++|+|+|.+.++  .+|.+.-.+....  ......       ......=..--....++.|.+++.+.++  .||
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~--~~~~W~-------~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG  107 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTH--DNDNWM-------GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKD  107 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCS--TTCCHH-------HHCEEEECSCGGGCSEEEECTTSCEEEE--ETT
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCC--Cccccc-------ccccEecccccccceEEEECCCCCEEEe--CCC
Confidence            36779999999987766  5776555543210  000000       0000110101112578899999988888  569


Q ss_pred             cEEEEeCCCCeEE------EEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCcee----eeeEEeccCCCeeeE
Q psy3640         433 TAKLWDVRTMCCF------YTL-KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE----LLQTFYGHSNEVSKV  501 (616)
Q Consensus       433 ~i~iwd~~~~~~~------~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~i  501 (616)
                      .|+-++-.+....      ..+ ..--..+..+.+.|+|.+.++.  |+.+.-........    ......... .-...
T Consensus       108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~-g~~~y  184 (236)
T 1tl2_A          108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG-GWDTF  184 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS-SGGGE
T ss_pred             EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC-CcceE
Confidence            9988876431110      111 1112468999999999887777  77654332221100    001111100 11123


Q ss_pred             EEEEEcCCCCEEEEEeCCCc
Q psy3640         502 LDIAFDYSGSKLATASSDQT  521 (616)
Q Consensus       502 ~~~~~s~~~~~l~~~~~dg~  521 (616)
                      ..+.|.+++...++.  ++.
T Consensus       185 r~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          185 KFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             EEEEECTTSCEEEEE--TTE
T ss_pred             EEEEECCCCcEEEEe--CCe
Confidence            346688888877776  553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.51  E-value=0.51  Score=41.76  Aligned_cols=176  Identities=7%  Similarity=-0.068  Sum_probs=94.1

Q ss_pred             CCCEEEEEECCCeEEEEeCCCcc------eeEEee----eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCce------e
Q psy3640         282 YGDKILTGSFDKTLKLWASAKEE------CIQTYR----GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQE------M  345 (616)
Q Consensus       282 ~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~----~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~  345 (616)
                      ...+|+....| +++.=...++.      ...++.    .....++|+|++.+.++  .+|.++-.+..+...      -
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34556666666 55554444333      111111    13346899998887776  678777766644211      1


Q ss_pred             EEee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640         346 HTLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM  424 (616)
Q Consensus       346 ~~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  424 (616)
                      ..+- .--....++.|.|+|.+.++  .||.|.-++....... ...        ......-...=..+..+.+.|+|.+
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~-~Wl--------~~a~~vg~~gw~~~~~lff~p~G~L  148 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD-NWI--------ARATEVGSGGWSGFKFLFFHPNGYL  148 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHH--------HHSEEEECSSGGGEEEEEECTTSCE
T ss_pred             cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC-cee--------ccccEeccCCCCceEEEEECCCceE
Confidence            1110 00111478999999988777  4698887764311000 000        0011111222356788999999988


Q ss_pred             EEEEeCCCcEEEEeCCCCe------EEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3640         425 IASSSLDGTAKLWDVRTMC------CFYTLK-NHEDEVLDIAFDYSGSKLATASSDQT  475 (616)
Q Consensus       425 l~~~~~dg~i~iwd~~~~~------~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~  475 (616)
                      .++.  |+.++-....+..      ....+- ..-..-..+.|.+++.+.++.  +|.
T Consensus       149 yav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~  202 (236)
T 1tl2_A          149 YAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK  202 (236)
T ss_dssp             EEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             EEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence            8877  7776544333211      011111 222234557788888777766  663

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.33  E-value=2.2  Score=41.12  Aligned_cols=233  Identities=11%  Similarity=0.058  Sum_probs=123.7

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEE----EecCccceeEEEEccC---CC
Q psy3640         351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI----LTGHSQEISNCLFNFS---NS  423 (616)
Q Consensus       351 ~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~---~~  423 (616)
                      .-.....|+|.|+|.++++--..|.|++++....              ....+..    ..........++++|+   +.
T Consensus        30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g--------------~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g   95 (347)
T 3das_A           30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTG--------------RKTELGEVPGVSPSGEGGLLGIALSPDYASDH   95 (347)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTC--------------CEEEEEECTTCCCBTTBSEEEEEECTTHHHHC
T ss_pred             CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCC--------------cEeeecccCceeecCCCCceeeEeccccccCC
Confidence            3445689999999987766655899998875311              0011111    1223456778999985   34


Q ss_pred             EEEEE-e--CCCcEEEEeCCC----------CeEEE-Eeec-CCCCEEEEEEcCCCCEEEEEeC-------------CCc
Q psy3640         424 MIASS-S--LDGTAKLWDVRT----------MCCFY-TLKN-HEDEVLDIAFDYSGSKLATASS-------------DQT  475 (616)
Q Consensus       424 ~l~~~-~--~dg~i~iwd~~~----------~~~~~-~~~~-~~~~v~~l~~~~~~~~l~~~~~-------------dg~  475 (616)
                      .|... +  .++.|.-|....          .+.+. .+.. .......|+|.|+|.+.++.+.             .|.
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~  175 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGK  175 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTC
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCE
Confidence            44433 2  345566665543          12221 2221 1123456999999987777543             244


Q ss_pred             EEEEecCCcee-------eeeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCc-----------------
Q psy3640         476 ANLWTVGGAVE-------LLQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGA-----------------  530 (616)
Q Consensus       476 i~iwd~~~~~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~-----------------  530 (616)
                      |.-.+......       ......++.    ....++|+|+|.+.++-. .++.-.+--+..+                 
T Consensus       176 IlRi~~dG~ip~~nPf~~~~i~a~G~R----Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~  251 (347)
T 3das_A          176 ILRMTPDGEPAPGNPFPGSPVYSYGHR----NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGF  251 (347)
T ss_dssp             EEEECTTSSBCTTCSSTTCCEEEBCCS----BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTC
T ss_pred             EEEEeCCCCccCCCCCCCCeEEeeCCC----CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccc
Confidence            44445443210       001111222    234689999877655432 2222222222111                 


Q ss_pred             eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee----eeEeccCcccEEEEEEeeCCCEEEEee
Q psy3640         531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC----IQVLKAHEDDVFSCGFNYNGDTIITAS  602 (616)
Q Consensus       531 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~----~~~~~~h~~~V~~l~~s~~~~~l~t~s  602 (616)
                      ...+..+..+......++|. +|..+...-..+.|....++.+..    ...+.+...++.+++..|||.++++.+
T Consensus       252 ~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          252 HDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            01122222222356677776 455666555566666666654432    233444457899999999998766644

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.97  E-value=1.2  Score=41.58  Aligned_cols=239  Identities=13%  Similarity=0.038  Sum_probs=120.0

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC
Q psy3640         189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG  268 (616)
Q Consensus       189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~  268 (616)
                      .|..++.... ..++. . ||.|..|-......+..-......|..++-.....++. . ||.|..|-....-.+..-..
T Consensus        25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~P~~   99 (282)
T 3qhy_B           25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTVPAE   99 (282)
T ss_dssp             SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCCCGG
T ss_pred             CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCCCcc
Confidence            4666666442 22333 4 88888887654222111111233567777665554545 4 89999997654222111111


Q ss_pred             CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE-EeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q psy3640         269 HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ-TYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT  347 (616)
Q Consensus       269 h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  347 (616)
                      -...|..++..   ..+.+.-. ||.|..|-......+. ..........+.....+.+.-. +|.++.|-......+..
T Consensus       100 ~~~~v~~ia~G---~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~  174 (282)
T 3qhy_B          100 ARSGVDAIAAG---AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV  174 (282)
T ss_dssp             GSSSEEEEEEE---TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC
T ss_pred             cCCCeEEEECc---CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC
Confidence            13468888876   35555556 9999999755422111 1111111223333333444444 78888886654222111


Q ss_pred             eecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEE
Q psy3640         348 LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS  427 (616)
Q Consensus       348 ~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  427 (616)
                      -......|..++...+ ..++.  .||.|..|-.........            +    ......|..++.......++ 
T Consensus       175 p~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~------------p----~~~~~~v~~i~~G~~h~~al-  234 (282)
T 3qhy_B          175 PAEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTV------------P----TEALSGVSAIASGEWYSLAL-  234 (282)
T ss_dssp             CGGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCC------------C----GGGGSSCCEEEECSSCEEEE-
T ss_pred             ceecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCC------------C----cccCCCceEEEcCCCEEEEE-
Confidence            1112356777776543 23444  499999997543211110            0    01122455555443333333 


Q ss_pred             EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640         428 SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS  463 (616)
Q Consensus       428 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  463 (616)
                       . ||.+..|-.....++.    ....|.+++....
T Consensus       235 -~-~g~v~~wG~n~~gq~~----v~~~v~~iaaG~~  264 (282)
T 3qhy_B          235 -K-NGKVIAWGSSRTAPSS----VQSGVSSIEAGPN  264 (282)
T ss_dssp             -E-TTEEEEESTTCCCCGG----GSSCEEEEEECSS
T ss_pred             -E-CCEEEEecCCCCcccc----CCCCcEEEEECcC
Confidence             3 8999999765432221    1235666655443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.88  E-value=0.73  Score=44.78  Aligned_cols=189  Identities=5%  Similarity=-0.031  Sum_probs=89.0

Q ss_pred             CCCEEEEEeC-C---------CcEEEEeCCCCeEEEEeecC-CCC-EEEEEEcCCCCEEEEEeCC---------------
Q psy3640         421 SNSMIASSSL-D---------GTAKLWDVRTMCCFYTLKNH-EDE-VLDIAFDYSGSKLATASSD---------------  473 (616)
Q Consensus       421 ~~~~l~~~~~-d---------g~i~iwd~~~~~~~~~~~~~-~~~-v~~l~~~~~~~~l~~~~~d---------------  473 (616)
                      ++.+++.|+. +         ..+.+||..+.+-...-... ... -.+++. .+++.++.|+.+               
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~  143 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAG  143 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcC
Confidence            5667777765 2         36889999887543322111 111 122222 466777777754               


Q ss_pred             ------------------------CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC------CCcEE
Q psy3640         474 ------------------------QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS------DQTAK  523 (616)
Q Consensus       474 ------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~  523 (616)
                                              ..+.+||..+..=.  ...........-.+++. -++++++.|+.      ...+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~  220 (357)
T 2uvk_A          144 KDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWS--YAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVF  220 (357)
T ss_dssp             TCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEE--EEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEE
T ss_pred             CcccchhhhhhhhccccccccCCcccEEEEeCCCCcEE--ECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceE
Confidence                                    46888888764211  11111111011011222 25666666653      34577


Q ss_pred             EEecCCceEEeEEeecc---ccCEEEEEEecCCCEEEEEECC----------------------CcEEEecCCcCe--ee
Q psy3640         524 LWTVGGAVELLQTFYGH---SNEVSKVSFHPTGKLVLSGSQD----------------------TTCRLWSTESGE--CI  576 (616)
Q Consensus       524 vwd~~~~~~~~~~~~~h---~~~v~~l~~spdg~~l~s~s~d----------------------g~i~iwd~~~~~--~~  576 (616)
                      .||++........+...   .......+...++++++.|+.+                      ..+.+||+.+.+  .+
T Consensus       221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~  300 (357)
T 2uvk_A          221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS  300 (357)
T ss_dssp             EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred             EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence            78762211222222111   1111222233466777777632                      247788887653  33


Q ss_pred             eEeccCcccEEEEEEeeCCCEEEEeeCCC------cEEEcccCCC
Q psy3640         577 QVLKAHEDDVFSCGFNYNGDTIITASKDN------TCCIWRSMNR  615 (616)
Q Consensus       577 ~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg------~i~vW~~~~~  615 (616)
                      ..+......  ..+...++++++.|+.++      .|.+++++++
T Consensus       301 ~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~  343 (357)
T 2uvk_A          301 GELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDN  343 (357)
T ss_dssp             EECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CC
T ss_pred             CCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCc
Confidence            333322222  222345788888888653      2444465543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.47  E-value=4.6  Score=40.65  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=61.3

Q ss_pred             CCcEEEEEEcCCCCEEEEECCC-cEEEEeCCCCceEE--EeeC------CCCcEEEEEEeCC---CCCEEEEEEC-----
Q psy3640         229 QNVVYAVAFSEPYGCLTGSYDR-TCKLWDIKSGHEIC--TYRG------HQNVVYAVAFSEP---YGDKILTGSF-----  291 (616)
Q Consensus       229 ~~~I~~l~fs~~~~lls~s~d~-~I~iwd~~~~~~~~--~~~~------h~~~V~~l~~~~~---~~~~l~s~s~-----  291 (616)
                      -.....|+|.|+++++++...+ .|++++..+++...  .+..      .......|+|+|.   ++.+.++-+.     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            3456799999999998888876 69999876665422  2221      2456789999932   4444444432     


Q ss_pred             -------CCeEEEEeCCCc-------ceeE-Eee---ec-eeeEEEcCCCCEEEEEeC
Q psy3640         292 -------DKTLKLWASAKE-------ECIQ-TYR---GH-SAEVTFSPDQSTFCSCSM  330 (616)
Q Consensus       292 -------dg~i~iwd~~~~-------~~~~-~~~---~~-~~~v~~~~~~~~l~~~~~  330 (616)
                             ...|.-++...+       +.+. .+.   .| ...++|.|++.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   134555554321       1111 121   12 356799999987776553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.15  E-value=2  Score=46.13  Aligned_cols=152  Identities=10%  Similarity=0.047  Sum_probs=81.1

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCeEEEEeecCCC-CEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceeeeeEE
Q psy3640         421 SNSMIASSSLDG------TAKLWDVRTMCCFYTLKNHED-EVLDIAFDYSGSKLATASSDQ--TANLWTVGGAVELLQTF  491 (616)
Q Consensus       421 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~-~v~~l~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~  491 (616)
                      ++.+++.|+.++      .+.+||..+.+-...-..... .-.+++.-.++..++.|+.++  .+.+||..+..  ....
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~  528 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDV  528 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEEC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEc
Confidence            677788877543      578899888643322111111 112233324777888877654  68889887642  1111


Q ss_pred             ec---cCCCeeeEEEEEEcCC-CCEEEEEeC--C-----CcEEEEecCCce-------EEeEEee-ccccCEEEEEEecC
Q psy3640         492 YG---HSNEVSKVLDIAFDYS-GSKLATASS--D-----QTAKLWTVGGAV-------ELLQTFY-GHSNEVSKVSFHPT  552 (616)
Q Consensus       492 ~~---~~~~~~~i~~~~~s~~-~~~l~~~~~--d-----g~i~vwd~~~~~-------~~~~~~~-~h~~~v~~l~~spd  552 (616)
                      ..   ..........+.+..+ +..++.|+.  +     +.+.+||+.+..       ..+.... ...... +++...+
T Consensus       529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~  607 (695)
T 2zwa_A          529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITP  607 (695)
T ss_dssp             CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEET
T ss_pred             cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCC
Confidence            11   1111111223455555 667777765  2     458899987653       2222211 111112 2233344


Q ss_pred             CCEEEEEEC--------CCcEEEecCCcCee
Q psy3640         553 GKLVLSGSQ--------DTTCRLWSTESGEC  575 (616)
Q Consensus       553 g~~l~s~s~--------dg~i~iwd~~~~~~  575 (616)
                      +++++.|+.        ...+.+||+.+.+-
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W  638 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSETL  638 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence            777788774        34589999987654

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.83  E-value=2  Score=40.06  Aligned_cols=221  Identities=14%  Similarity=0.088  Sum_probs=107.9

Q ss_pred             cEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-
Q psy3640         231 VVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-  309 (616)
Q Consensus       231 ~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-  309 (616)
                      .|..++-.....++. . ||.|..|-....-.+..-......|..++..   ..+.+.-. ||.|..|-......+..- 
T Consensus        25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G---~~hs~~l~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG---NYHSLALK-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC---SSEEEEEE-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC---CCEEEEEE-CCEEEEeeCCCCCCCCCCc
Confidence            466666554433334 4 8999999754432211111123357777764   23333335 899999975532111100 


Q ss_pred             eeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcc
Q psy3640         310 RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRN  389 (616)
Q Consensus       310 ~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~  389 (616)
                      ........+.....+.+.-. +|.|+.|-....-.+-........|..++...+  ..+.-. ||.|..|-........ 
T Consensus        99 ~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg-  173 (282)
T 3qhy_B           99 EARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTT-  173 (282)
T ss_dssp             GGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTS-
T ss_pred             ccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCC-
Confidence            00111223333344455555 888999976542211111123346777766433  222234 7999999765321110 


Q ss_pred             cccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEE
Q psy3640         390 AYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT  469 (616)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~  469 (616)
                                 .+    ......|..++...... ++.  .+|.++.|-....-.+-.-......|..++..... .++.
T Consensus       174 -----------~p----~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al  234 (282)
T 3qhy_B          174 -----------VP----AEAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL  234 (282)
T ss_dssp             -----------CC----GGGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE
T ss_pred             -----------Cc----eecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEE
Confidence                       00    00123455554433322 233  48889998654321111111122456677665433 3333


Q ss_pred             EeCCCcEEEEecCC
Q psy3640         470 ASSDQTANLWTVGG  483 (616)
Q Consensus       470 ~~~dg~i~iwd~~~  483 (616)
                       . ||.+..|-...
T Consensus       235 -~-~g~v~~wG~n~  246 (282)
T 3qhy_B          235 -K-NGKVIAWGSSR  246 (282)
T ss_dssp             -E-TTEEEEESTTC
T ss_pred             -E-CCEEEEecCCC
Confidence             3 88999997654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=91.38  E-value=5.3  Score=42.77  Aligned_cols=192  Identities=8%  Similarity=0.017  Sum_probs=99.1

Q ss_pred             cCCCEEEEEeCC----CcEEEEeCCCCeEEEEe-e------cCCCCEEEEEEcC-CCCEEEEEeCC------CcEEEEec
Q psy3640         420 FSNSMIASSSLD----GTAKLWDVRTMCCFYTL-K------NHEDEVLDIAFDY-SGSKLATASSD------QTANLWTV  481 (616)
Q Consensus       420 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~------~~~~~v~~l~~~~-~~~~l~~~~~d------g~i~iwd~  481 (616)
                      .++.+++.|+.+    ..+.+||..+.+-...- .      .....-.+++..+ ++..++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777653    45888998876543322 1      1111112233333 66777777643      34778887


Q ss_pred             CCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC--cEEEEecCCceE-EeEE---eeccccCEEEEEEecC-CC
Q psy3640         482 GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ--TAKLWTVGGAVE-LLQT---FYGHSNEVSKVSFHPT-GK  554 (616)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~vwd~~~~~~-~~~~---~~~h~~~v~~l~~spd-g~  554 (616)
                      .+..  ............ -.+++.-.++..++.|+.++  .+.+||..+..= .+..   .........++.+..+ ++
T Consensus       476 ~t~~--W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          476 KTRE--WSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TTTE--EEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             CCCc--EEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence            6632  111111111111 11233334888888888655  689999876421 1111   1111122233555555 66


Q ss_pred             EEEEEEC--C-----CcEEEecCCcCe--------eeeEec-cCcccEEEEEEeeCCCEEEEeeCC--------CcEEEc
Q psy3640         555 LVLSGSQ--D-----TTCRLWSTESGE--------CIQVLK-AHEDDVFSCGFNYNGDTIITASKD--------NTCCIW  610 (616)
Q Consensus       555 ~l~s~s~--d-----g~i~iwd~~~~~--------~~~~~~-~h~~~V~~l~~s~~~~~l~t~s~D--------g~i~vW  610 (616)
                      +++.|+.  +     ..+.+||+.+..        .+.... .....- +++...++.+++.|+.+        ..+.+|
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y  631 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISL  631 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence            7777765  2     358899988776        111111 111111 22333347788888753        458888


Q ss_pred             ccCCC
Q psy3640         611 RSMNR  615 (616)
Q Consensus       611 ~~~~~  615 (616)
                      |+.+.
T Consensus       632 d~~t~  636 (695)
T 2zwa_A          632 DPLSE  636 (695)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            87653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=88.44  E-value=24  Score=36.05  Aligned_cols=266  Identities=9%  Similarity=-0.001  Sum_probs=145.7

Q ss_pred             EEEEECCCcEEEEECCCCcEEEEEeccC-------------------------CcE--EEEEEc---CCCCEE-EEE-CC
Q psy3640         202 CLTGSYDRTCKLWDIKSGHEICTYRGHQ-------------------------NVV--YAVAFS---EPYGCL-TGS-YD  249 (616)
Q Consensus       202 lasgs~dg~i~iwd~~~~~~~~~~~~h~-------------------------~~I--~~l~fs---~~~~ll-s~s-~d  249 (616)
                      +.+|+..|.|+|+-+.+++.++.+.-.+                         +..  ..+.+.   .||+++ .-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            5688899999999999999988774110                         000  122232   245554 222 46


Q ss_pred             CcEEEEeCCCCceEEEee-CCCCcEEEEEEeC-CCCCEEEEEECC-------CeE---------EE---EeCCCcceeEE
Q psy3640         250 RTCKLWDIKSGHEICTYR-GHQNVVYAVAFSE-PYGDKILTGSFD-------KTL---------KL---WASAKEECIQT  308 (616)
Q Consensus       250 ~~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~-~~~~~l~s~s~d-------g~i---------~i---wd~~~~~~~~~  308 (616)
                      ..|...+++..+.-..+. .....+..+.|.. |+..+++.++..       |..         .+   .|..+.+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            678888888887665554 3566788888873 677788877652       221         11   12222221111


Q ss_pred             e--eeceeeEEEcCCCCEEEEEeCCC---------------cEEEE-------------------------ECCC----C
Q psy3640         309 Y--RGHSAEVTFSPDQSTFCSCSMDH---------------TARIF-------------------------NTNS----G  342 (616)
Q Consensus       309 ~--~~~~~~v~~~~~~~~l~~~~~dg---------------~i~i~-------------------------d~~~----~  342 (616)
                      +  .+....+...+++.+.++.+.+.               .+.++                         |.+.    +
T Consensus       233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~  312 (638)
T 3sbq_A          233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD  312 (638)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred             EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence            1  12222234566667666655321               13333                         3332    1


Q ss_pred             ceeEEeecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC
Q psy3640         343 QEMHTLKAHTGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS  421 (616)
Q Consensus       343 ~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  421 (616)
                      ..+..+-.-......+..+|||+++++++. +.++.++|++........   .... ....+.....-.-.....+|.++
T Consensus       313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~---k~~~-~~~~~~ae~e~GlGPlHt~Fd~~  388 (638)
T 3sbq_A          313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG---KLAD-PRDVIVGEPELGLGPLHTTFDGR  388 (638)
T ss_dssp             CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT---CCSC-GGGGEEECCBCCSCEEEEEECSS
T ss_pred             CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc---cccC-cccceEeeccCCCcccEEEECCC
Confidence            111111112233467889999998887664 789999998742110000   0000 11111111122334456788888


Q ss_pred             CCEEEEEeCCCcEEEEeCCCC----------eEEEEeecCCCCEEEEE-----EcCCCCEEEEEe
Q psy3640         422 NSMIASSSLDGTAKLWDVRTM----------CCFYTLKNHEDEVLDIA-----FDYSGSKLATAS  471 (616)
Q Consensus       422 ~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~-----~~~~~~~l~~~~  471 (616)
                      |....+---|..|..|++...          ..+..+.-|-.+-.-.+     -.++|++|++..
T Consensus       389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence            855556668999999998653          44555554543322221     257899999874

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.94  E-value=24  Score=34.40  Aligned_cols=171  Identities=8%  Similarity=-0.031  Sum_probs=87.3

Q ss_pred             CEEEEEECCCcEEEEECCC-CcEEEEE--eccCCcEEEEEEcC--CCCEEEEECCC----cEEEEeCCCCceEEEeeC--
Q psy3640         200 TRCLTGSYDRTCKLWDIKS-GHEICTY--RGHQNVVYAVAFSE--PYGCLTGSYDR----TCKLWDIKSGHEICTYRG--  268 (616)
Q Consensus       200 ~~lasgs~dg~i~iwd~~~-~~~~~~~--~~h~~~I~~l~fs~--~~~lls~s~d~----~I~iwd~~~~~~~~~~~~--  268 (616)
                      ..|.+|+..| +.+++... +..-..+  ......|.+|++.|  ++.+.+++..+    .|...+ +.++.-..+..  
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~  100 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPP  100 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCC
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccc
Confidence            4677788777 55555432 3222222  12346799999998  66677666555    444332 23322122110  


Q ss_pred             ------------CCCcEEEEEEeCCC-CCEEEEEECCCeEEEEeCCCcceeEEee----------------------ece
Q psy3640         269 ------------HQNVVYAVAFSEPY-GDKILTGSFDKTLKLWASAKEECIQTYR----------------------GHS  313 (616)
Q Consensus       269 ------------h~~~V~~l~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~----------------------~~~  313 (616)
                                  +...|.++++.+.+ .+.+..++..+.|...+-. ++.-..+.                      ...
T Consensus       101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i  179 (394)
T 3b7f_A          101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM  179 (394)
T ss_dssp             CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred             cCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCCce
Confidence                        11358889998544 5666666666655544322 22111111                      112


Q ss_pred             eeEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEeecC-------------CcCEEEEEEcCC-CCEEEEEECCC
Q psy3640         314 AEVTFSPD-QSTFCSCSMDHTARIFNTNSGQEMHTLKAH-------------TGPVISLQFSSD-RNMLITGSFDS  374 (616)
Q Consensus       314 ~~v~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~~~-~~~l~~g~~dg  374 (616)
                      ..+.+.|. ...+.++..++.|...+ ..++.-..+...             ...+.+++++|+ ...+.++...+
T Consensus       180 ~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          180 HSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             eEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            35677773 44555555444444332 223332222110             134889999885 46677776544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=86.62  E-value=28  Score=34.90  Aligned_cols=116  Identities=11%  Similarity=0.105  Sum_probs=60.1

Q ss_pred             cCEEEEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEE--EecCccceeEEEEccC----CCEE
Q psy3640         353 GPVISLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI--LTGHSQEISNCLFNFS----NSMI  425 (616)
Q Consensus       353 ~~v~~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~----~~~l  425 (616)
                      .....|+|.|+|. .++++...|.|++++...... ......     .......  ..........++++|+    +.+.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~-----~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY   87 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLD-----IHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY   87 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEE-----CTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecC-----CcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence            3457899999986 566667889999997431110 000000     0000000  0012345678899886    3333


Q ss_pred             EEEeC--C----------CcEEEEeCCC----------CeEEEEee--cCCCCEEEEEEcCCCCEEEEEeCCC
Q psy3640         426 ASSSL--D----------GTAKLWDVRT----------MCCFYTLK--NHEDEVLDIAFDYSGSKLATASSDQ  474 (616)
Q Consensus       426 ~~~~~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~~~~~~~l~~~~~dg  474 (616)
                      ++-+.  +          ..|.-|.+..          .+.+..+.  ........|+|.|||.+.++.+..+
T Consensus        88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            33221  1          1344454431          23333332  1223467899999998777766543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=86.12  E-value=26  Score=34.09  Aligned_cols=300  Identities=9%  Similarity=-0.045  Sum_probs=129.8

Q ss_pred             CCCEEEEECCCcEEEEeCCC-CceEEEe--eCCCCcEEEEEEeCCCCCEEEEEECCC----eEEEEeCCCcceeEEee--
Q psy3640         240 PYGCLTGSYDRTCKLWDIKS-GHEICTY--RGHQNVVYAVAFSEPYGDKILTGSFDK----TLKLWASAKEECIQTYR--  310 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~-~~~~~~~--~~h~~~V~~l~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~--  310 (616)
                      ++.+.+++..| +.+.+-.. ++.-..+  ......|.+|++.|.+...+..++..|    .|...+ ..++.-..+.  
T Consensus        22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~   99 (394)
T 3b7f_A           22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP   99 (394)
T ss_dssp             CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred             CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence            34466777766 44444332 2221211  123467999999854455555555555    343332 2222211111  


Q ss_pred             ----e-----------ceeeEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEeec-------------------CCcC
Q psy3640         311 ----G-----------HSAEVTFSPD--QSTFCSCSMDHTARIFNTNSGQEMHTLKA-------------------HTGP  354 (616)
Q Consensus       311 ----~-----------~~~~v~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------~~~~  354 (616)
                          .           +...+++.|.  ...+.+++..+.|...+ ..++.-..+..                   ....
T Consensus       100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~  178 (394)
T 3b7f_A          100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK  178 (394)
T ss_dssp             CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred             ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence                0           1224567762  45666666555554442 22333222211                   1235


Q ss_pred             EEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC-CCEEEEEeCCC
Q psy3640         355 VISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS-NSMIASSSLDG  432 (616)
Q Consensus       355 v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg  432 (616)
                      +.+|.++|. ...++++..++.|...+-.  ...-....... .....+.. .......+..+++.+. ...+.++...+
T Consensus       179 i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg--G~tW~~~~~~~-~~~~~p~~-~~~~g~~~~~i~~~~~~~~~l~vg~~~g  254 (394)
T 3b7f_A          179 MHSILVDPRDPKHLYIGMSSGGVFESTDA--GTDWKPLNRGC-AANFLPDP-NVEFGHDPHCVVQHPAAPDILYQQNHCG  254 (394)
T ss_dssp             EEEEEECTTCTTCEEEEEETBEEEEESST--TSSCEECCTTC-CCTTSSSS-SSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred             eeEEEECCCCCCEEEEEECCCCEEEECCC--CCCceECCCCc-cccccCCC-ccccCcceeEEEECCCCCCEEEEEcCCe
Confidence            788999873 4455555544444333211  00000000000 00000000 0000134777888875 35666666554


Q ss_pred             cEEEEeCCCCeEEEEeec--CC---CCEEEEEEcCC-CCEEEEEeC-----------CCcEEEEecCCceeeeeEEec-c
Q psy3640         433 TAKLWDVRTMCCFYTLKN--HE---DEVLDIAFDYS-GSKLATASS-----------DQTANLWTVGGAVELLQTFYG-H  494 (616)
Q Consensus       433 ~i~iwd~~~~~~~~~~~~--~~---~~v~~l~~~~~-~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~-~  494 (616)
                       |...+- .++.-..+..  ..   ..+.+++++|. ...+.++..           ++...+|...+.......+.. .
T Consensus       255 -l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~gl  332 (394)
T 3b7f_A          255 -IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGL  332 (394)
T ss_dssp             -EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTS
T ss_pred             -EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCC
Confidence             444432 2222222221  11   34677888863 344554432           333455555443222222211 1


Q ss_pred             CCCe--e--eEEEEEEcCCC-CEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEe
Q psy3640         495 SNEV--S--KVLDIAFDYSG-SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFH  550 (616)
Q Consensus       495 ~~~~--~--~i~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~s  550 (616)
                      ....  .  -...++++|.. ..|++++.++.|..-.-.  ......+..+-..+.+++|.
T Consensus       333 p~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~D~--G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          333 PTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASADE--GEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             CCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEESST--TSBCEEEECSCSCEEEEEEE
T ss_pred             CCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEECCC--CCCceEcccCCCCeeEEEEe
Confidence            1100  0  01246777753 456666656655433221  12233333344557777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	616
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-50
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-47
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-33
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-40
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-36
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-30
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-20
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-38
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-36
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-32
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-17
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-36
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-30
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-28
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-25
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-23
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-15
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-27
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-23
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-16
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-26
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-24
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-26
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-25
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-26
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-25
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-25
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-23
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-15
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-24
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-20
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-20
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-15
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-23
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-20
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-17
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-12
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-21
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-17
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-20
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-18
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-18
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-16
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	7e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-19
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-17
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-16
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-17
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-16
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-17
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-14
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-16
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-15
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-15
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-14
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-12
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-11
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	8e-13
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-07
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-07
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	8e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  175 bits (444), Expect = 1e-50
 Identities = 90/361 (24%), Positives = 148/361 (40%), Gaps = 48/361 (13%)

Query: 253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 312
           K W  +   E     GH++ V  V F  P    +++ S D T+K+W     +  +T +GH
Sbjct: 1   KEWIPR-PPEKYALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGH 58

Query: 313 SAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLIT 369
           +  V    F        SCS D T ++++    + + T+  H   V S+    + + +++
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS 429
            S D +I +W++Q                +   +   TGH + +     N   ++IAS S
Sbjct: 119 ASRDKTIKMWEVQ----------------TGYCVKTFTGHREWVRMVRPNQDGTLIASCS 162

Query: 430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQ 489
            D T ++W V T  C   L+ H   V  I++    S  + + +  +              
Sbjct: 163 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK---------- 212

Query: 490 TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF 549
                               G  L + S D+T K+W V      L T  GH N V  V F
Sbjct: 213 ----------------SGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLF 255

Query: 550 HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCI 609
           H  GK +LS + D T R+W  ++  C++ L AHE  V S  F+     ++T S D T  +
Sbjct: 256 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 610 W 610
           W
Sbjct: 316 W 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  167 bits (424), Expect = 1e-47
 Identities = 71/304 (23%), Positives = 121/304 (39%), Gaps = 7/304 (2%)

Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
           L  H  P+T + F    +  ++ S D T K+WD ++G    T +GH + V  ++F     
Sbjct: 13  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72

Query: 243 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 302
            L               G E        +   +     P GD I++ S DKT+K+W    
Sbjct: 73  LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132

Query: 303 EECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQ 359
             C++T+ GH      V  + D +   SCS D T R++   + +    L+ H   V  + 
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

Query: 360 FSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYR----ASHKPIHILTGHSQEISN 415
           ++ + +         S      +      +   + T +    ++   +  L GH   +  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 416 CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT 475
            LF+     I S + D T ++WD +   C  TL  HE  V  + F  +   + T S DQT
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312

Query: 476 ANLW 479
             +W
Sbjct: 313 VKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 2e-33
 Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 23/229 (10%)

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYA 234
           Q +E  + +  H   +++++    G   ++ S D+T K+W++++G+ + T+ GH+  V  
Sbjct: 89  QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 148

Query: 235 VAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF--------------- 278
           V  ++    + + S D+T ++W + +       R H++VV  +++               
Sbjct: 149 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 208

Query: 279 ----SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMD 331
               S   G  +L+GS DKT+K+W  +   C+ T  GH   V    F        SC+ D
Sbjct: 209 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 268

Query: 332 HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
            T R+++  + + M TL AH   V SL F      ++TGS D ++ VW+
Sbjct: 269 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.0 bits (232), Expect = 9e-22
 Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 5/214 (2%)

Query: 401 KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF 460
              + L+GH   ++  +F+   S++ S+S D T K+WD  T     TLK H D V DI+F
Sbjct: 8   PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISF 67

Query: 461 DYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ 520
           D+SG       +  +A++       +  +           V  ++   +G  + +AS D+
Sbjct: 68  DHSGKL----LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 521 TAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK 580
           T K+W V      ++TF GH   V  V  +  G L+ S S D T R+W   + EC   L+
Sbjct: 124 TIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

Query: 581 AHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
            H   V    +         +    +        
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKP 216

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.2 bits (165), Expect = 5e-13
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 523 KLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
           K W             GH + V++V FHP   +++S S+D T ++W  E+G+  + LK H
Sbjct: 1   KEWIPRP--PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58

Query: 583 EDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
            D V    F+++G  + + S D T  +W    
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQG 90

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  149 bits (376), Expect = 1e-40
 Identities = 67/313 (21%), Positives = 127/313 (40%), Gaps = 21/313 (6%)

Query: 302 KEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
           +    +T RGH A++    +  D     S S D    I+++ +  ++H +   +  V++ 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
            ++   N +  G  D+   +++++ + G      E      +         +Q +++   
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG- 162

Query: 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANL 478
                       D T  LWD+ T     T   H  +V+ ++         + + D +A L
Sbjct: 163 ------------DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210

Query: 479 WTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL-WTVGGAVELLQTF 537
           W V       QTF GH ++++    I F  +G+  AT S D T +L         +  + 
Sbjct: 211 WDVREG-MCRQTFTGHESDIN---AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 538 YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT 597
                 ++ VSF  +G+L+L+G  D  C +W     +   VL  H++ V   G   +G  
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 598 IITASKDNTCCIW 610
           + T S D+   IW
Sbjct: 327 VATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  136 bits (343), Expect = 3e-36
 Identities = 55/350 (15%), Positives = 116/350 (33%), Gaps = 39/350 (11%)

Query: 155 ITQLEQSIMKLQKKLKEG-------------------FAQRYEKFKMLKSHLLPLTNITF 195
           + QL Q   +L+ ++++                       +    + L+ HL  +  + +
Sbjct: 4   LDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHW 63

Query: 196 DKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLW 255
                  ++ S D    +WD  + +++       + V   A++     +           
Sbjct: 64  GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123

Query: 256 DIKSGHEICTYRGHQNV---VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH 312
                 E       +      Y         ++I+T S D T  LW     +   T+ GH
Sbjct: 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH 183

Query: 313 SAEVTFSPDQ---STFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLIT 369
           + +V           F S + D +A++++   G    T   H   + ++ F  + N   T
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243

Query: 370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS 429
           GS D++  ++D++                     +        I++  F+ S  ++ +  
Sbjct: 244 GSDDATCRLFDLRADQ--------------ELMTYSHDNIICGITSVSFSKSGRLLLAGY 289

Query: 430 LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
            D    +WD         L  H++ V  +     G  +AT S D    +W
Sbjct: 290 DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  120 bits (301), Expect = 1e-30
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 7/180 (3%)

Query: 207 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICT 265
            D TC LWDI++G +  T+ GH   V +++ +      ++G+ D + KLWD++ G    T
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

Query: 266 YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-----VTFSP 320
           + GH++ + A+ F  P G+   TGS D T +L+    ++ + TY   +       V+FS 
Sbjct: 222 FTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280

Query: 321 DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
                 +   D    +++         L  H   V  L  + D   + TGS+DS + +W+
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.8 bits (221), Expect = 4e-20
 Identities = 48/222 (21%), Positives = 82/222 (36%), Gaps = 2/222 (0%)

Query: 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE 452
           +   R   +    L GH  +I    +   + ++ S+S DG   +WD  T    + +    
Sbjct: 38  DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97

Query: 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSK 512
             V+  A+  SG+ +A    D   +++ +                          +    
Sbjct: 98  SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG--NVRVSRELAGHTGYLSCCRFLDDN 155

Query: 513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES 572
               SS  T          +   TF GH+ +V  +S  P  +L +SG+ D + +LW    
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

Query: 573 GECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
           G C Q    HE D+ +  F  NG+   T S D TC ++    
Sbjct: 216 GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.8 bits (169), Expect = 2e-13
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 168 KLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG 227
           +L +  A +        + +  +T+++F K G   L G  D  C +WD           G
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310

Query: 228 HQNVVYAVAFSEPYGCL--TGSYDRTCKLWD 256
           H N V  +  +   G    TGS+D   K+W+
Sbjct: 311 HDNRVSCLGVT-DDGMAVATGSWDSFLKIWN 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (357), Expect = 3e-38
 Identities = 60/336 (17%), Positives = 119/336 (35%), Gaps = 35/336 (10%)

Query: 298 WASAKEECIQTYRGHSAEVT--FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
           W   + +  +  +GH   V        +   S S D+T ++++  +G+ + TL  HTG V
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 356 ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG------- 408
            S Q   +  +  +      +   +      T   +  +          +++G       
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 409 -------------HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV 455
                             +     +    + S + D   K+WD  T  C +TL+ H + V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT 515
             + FD  G  + + S D +  +W V      + T  GH +  S       +   + L +
Sbjct: 181 YSLQFD--GIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQSLTS-----GMELKDNILVS 232

Query: 516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
            ++D T K+W +     L      + ++ +          V++ S D T +LW  ++GE 
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

Query: 576 IQVLKA-----HEDDVFSCGFNYNGDTIITASKDNT 606
           I+ L           V+    +         S++ T
Sbjct: 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (344), Expect = 2e-36
 Identities = 73/356 (20%), Positives = 128/356 (35%), Gaps = 33/356 (9%)

Query: 214 WDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVV 273
           W           +GH + V           ++GS D T K+W   +G  + T  GH   V
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 274 YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHT 333
           ++    +       T          A   E     Y   S        +    S S D T
Sbjct: 61  WSSQMRDNIIISGST--DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDAT 118

Query: 334 ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE 393
            R+++  +GQ +H L  H   V       D   +++G++D  + VWD +           
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPET---------- 166

Query: 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
                    +H L GH+         F    + S SLD + ++WDV T  C +TL  H+ 
Sbjct: 167 ------ETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 218

Query: 454 EVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL 513
               +      + L + ++D T  +W +     L      + ++ +        ++ + +
Sbjct: 219 LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA---VTCLQFNKNFV 273

Query: 514 ATASSDQTAKLWTVGGAVELLQTFY-----GHSNEVSKVSFHPTGKLVLSGSQDTT 564
            T+S D T KLW +    E ++        G    V ++    T  +   GS++ T
Sbjct: 274 ITSSDDGTVKLWDLKTG-EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 2e-32
 Identities = 74/346 (21%), Positives = 134/346 (38%), Gaps = 66/346 (19%)

Query: 176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV 235
             +  K+LK H   +        G R ++GS D T K+W   +G  + T  GH   V++ 
Sbjct: 5   ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS 63

Query: 236 AFSE---------------------------------------PYGCLTGSYDRTCKLWD 256
              +                                           ++GS D T ++WD
Sbjct: 64  QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWD 123

Query: 257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHS-AE 315
           I++G  +    GH     AV   +  G ++++G++D  +K+W    E C+ T +GH+   
Sbjct: 124 IETGQCLHVLMGHVA---AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS 375
            +   D     S S+D + R+++  +G  +HTL  H      ++     N+L++G+ DS+
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST 238

Query: 376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK 435
           + +WDI+                      +   +  + +     F+ + + +SS DGT K
Sbjct: 239 VKIWDIKTG---------------QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVK 283

Query: 436 LWDVRTMCCFYTLKN-----HEDEVLDIAFDYSGSKLATASSDQTA 476
           LWD++T      L           V  I    +    A  S + T 
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 6e-17
 Identities = 46/214 (21%), Positives = 76/214 (35%), Gaps = 14/214 (6%)

Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
           R   K   +L GH   +  C   F  + I S S D T K+W   T  C  TL  H   V 
Sbjct: 3   RGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61

Query: 457 DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA 516
                 +     +                        H+                ++ + 
Sbjct: 62  SSQMRDNIIISGSTDRTLKVWNAE--------TGECIHTLYGHTSTVRCMHLHEKRVVSG 113

Query: 517 SSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECI 576
           S D T ++W +    + L    GH   V        G+ V+SG+ D   ++W  E+  C+
Sbjct: 114 SRDATLRVWDIETG-QCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCL 170

Query: 577 QVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
             L+ H + V+S  F+  G  +++ S D +  +W
Sbjct: 171 HTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVW 202

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 5e-12
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 1/86 (1%)

Query: 529 GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFS 588
           G ++  +   GH + V        G  ++SGS D T ++WS  +G+C++ L  H   V+S
Sbjct: 4   GELKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 589 CGFNYNGDTIITASKDNTCCIWRSMN 614
                N     +  +        +  
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGE 88

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  138 bits (346), Expect = 3e-36
 Identities = 86/395 (21%), Positives = 142/395 (35%), Gaps = 69/395 (17%)

Query: 244 LTGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA 299
           L    +    L++         E+     H +VV  V FS   G+ + TG  +KT +++ 
Sbjct: 32  LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLATGC-NKTTQVYR 89

Query: 300 SAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQ 359
            +    +      SA      + +T                      +  +    + S+ 
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNT---------------------SSSPSSDLYIRSVC 128

Query: 360 FSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFN 419
           FS D   L TG+ D  I +WDI+                  K + IL GH Q+I +  + 
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIEN----------------RKIVMILQGHEQDIYSLDYF 172

Query: 420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
            S   + S S D T ++WD+RT  C  TL   +           G  +A  S D+   +W
Sbjct: 173 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVW 232

Query: 480 TVGGAV------ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL 533
                          ++  GH + V     + F   G  + + S D++ KLW +  A   
Sbjct: 233 DSETGFLVERLDSENESGTGHKDSVY---SVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

Query: 534 -----------LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAH 582
                        T+ GH + V  V+     + +LSGS+D     W  +SG  + +L+ H
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 349

Query: 583 EDDVFSCG------FNYNGDTIITASKDNTCCIWR 611
            + V S             +   T S D    IW+
Sbjct: 350 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  120 bits (301), Expect = 3e-30
 Identities = 62/331 (18%), Positives = 120/331 (36%), Gaps = 41/331 (12%)

Query: 186 HLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG------------------ 227
           H   +  + F   G    TG  ++T +++ +  G  +                       
Sbjct: 61  HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119

Query: 228 HQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDK 285
               + +V FS P G    TG+ DR  ++WDI++   +   +GH+  +Y++ +       
Sbjct: 120 SDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 286 ILTGSFD--KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQ 343
           +        +   L        +    G +       D     + S+D   R++++ +G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 344 EMHTLK-------AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
            +  L         H   V S+ F+ D   +++GS D S+ +W++Q      N  ++S  
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ----NANNKSDSKT 294

Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
             S        GH   + +     ++  I S S D     WD ++      L+ H + V+
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 354

Query: 457 DIA------FDYSGSKLATASSDQTANLWTV 481
            +A           +  AT S D  A +W  
Sbjct: 355 SVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (156), Expect = 8e-12
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE-----PYGCL- 244
            ++   +     L+GS DR    WD KSG+ +   +GH+N V +VA +      P   + 
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371

Query: 245 -TGSYDRTCKLWDIK 258
            TGS D   ++W  K
Sbjct: 372 ATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 40/220 (18%), Positives = 74/220 (33%), Gaps = 37/220 (16%)

Query: 402 PIHILTGHSQEISNCLFNF---SNSMIASSSLDGTAKLWDVRTMCCFY----TLKNHEDE 454
           P +    HS+ I   L +    S         +    L++               +H   
Sbjct: 5   PYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSV 64

Query: 455 VLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLA 514
           V  + F   G  LAT   ++T  ++ V     L+      S       ++          
Sbjct: 65  VCCVKFSNDGEYLATGC-NKTTQVYRVSD-GSLVARLSDDSAANKDPENLNT-------- 114

Query: 515 TASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE 574
                                +       +  V F P GK + +G++D   R+W  E+ +
Sbjct: 115 --------------------SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 154

Query: 575 CIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
            + +L+ HE D++S  +  +GD +++ S D T  IW    
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 194

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (276), Expect = 9e-28
 Identities = 57/311 (18%), Positives = 104/311 (33%), Gaps = 33/311 (10%)

Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 237
           ++          +  + +D    + ++G  D T K+WD  +        GH   V  + +
Sbjct: 6   QRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63

Query: 238 SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297
            E       S                      + V++    +          S       
Sbjct: 64  DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123

Query: 298 WASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVIS 357
             +            +A      D     S S D T +++NT++ + + TL  H   +  
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIAC 183

Query: 358 LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
           LQ+     ++++GS D++I +WDI+                    + +L GH +      
Sbjct: 184 LQYRD--RLVVSGSSDNTIRLWDIE----------------CGACLRVLEGHEE--LVRC 223

Query: 418 FNFSNSMIASSSLDGTAKLWDVRTM---------CCFYTLKNHEDEVLDIAFDYSGSKLA 468
             F N  I S + DG  K+WD+             C  TL  H   V  + FD    ++ 
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIV 281

Query: 469 TASSDQTANLW 479
           ++S D T  +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 2e-25
 Identities = 60/316 (18%), Positives = 105/316 (33%), Gaps = 37/316 (11%)

Query: 261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSP 320
             I         VY + +      KI++G  D T+K+W     EC +   GH+  V    
Sbjct: 6   QRIHCRSETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 321 DQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD 380
                       +       +  EM     H    +     ++  M+       SI VWD
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR-SIAVWD 121

Query: 381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVR 440
           +                                +  + +F +  I S+S D T K+W+  
Sbjct: 122 MASP---------------TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 166

Query: 441 TMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSK 500
           T     TL  H+  +  + +      + + SSD T  LW +     L         E  +
Sbjct: 167 TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL------RVLEGHE 218

Query: 501 VLDIAFDYSGSKLATASSDQTAKLWTVGGAVE--------LLQTFYGHSNEVSKVSFHPT 552
            L     +   ++ + + D   K+W +  A++         L+T   HS  V ++ F   
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-- 276

Query: 553 GKLVLSGSQDTTCRLW 568
              ++S S D T  +W
Sbjct: 277 EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 1e-23
 Identities = 61/320 (19%), Positives = 109/320 (34%), Gaps = 46/320 (14%)

Query: 304 ECIQTYRGHSAEVT-FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSS 362
           + I      S  V     D     S   D+T +I++ N+ +    L  HTG V+ LQ+  
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 363 DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN 422
              +  +      +   +      T   + E+          ++T               
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD----------- 114

Query: 423 SMIASSSLDGTAKLWDVRTM---CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
                     +  +WD+ +         L  H   V  + FD     + +AS D+T  +W
Sbjct: 115 ---------RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVW 163

Query: 480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYG 539
                 E ++T  GH   ++        Y    + + SSD T +LW +     L      
Sbjct: 164 NTSTC-EFVRTLNGHKRGIAC-----LQYRDRLVVSGSSDNTIRLWDIECGACL---RVL 214

Query: 540 HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE---------CIQVLKAHEDDVFSCG 590
             +E          K ++SG+ D   ++W   +           C++ L  H   VF   
Sbjct: 215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 274

Query: 591 FNYNGDTIITASKDNTCCIW 610
           F+     I+++S D+T  IW
Sbjct: 275 FD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.7 bits (184), Expect = 1e-15
 Identities = 42/214 (19%), Positives = 83/214 (38%), Gaps = 12/214 (5%)

Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
           R S + IH  +  S+ +  CL  + +  I S   D T K+WD  T+ C   L  H   VL
Sbjct: 2   RHSLQRIHCRSETSKGV-YCL-QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL 59

Query: 457 DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA 516
            + +D       ++ S         G           ++        +   ++   + T 
Sbjct: 60  CLQYDERVIITGSSDSTVRVWDVNTG--------EMLNTLIHHCEAVLHLRFNNGMMVTC 111

Query: 517 SSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECI 576
           S D++  +W +    ++        +  +        K ++S S D T ++W+T + E +
Sbjct: 112 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV 171

Query: 577 QVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           + L  H+  +    +      +++ S DNT  +W
Sbjct: 172 RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 203

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  110 bits (275), Expect = 4e-27
 Identities = 27/364 (7%), Positives = 73/364 (20%), Gaps = 32/364 (8%)

Query: 232 VYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGS 290
            +A  FS   G  +         + D+   + +         +  V              
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRG-GDTKVAFIHG 61

Query: 291 FD--KTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEM 345
                 L ++     +  + +  +   V       +       +        +  +G+  
Sbjct: 62  TREGDFLGIYDYRTGK-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 120

Query: 346 HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
              ++    +     S +   +  G             +       A   Y    + I  
Sbjct: 121 VIERSREAMITDFTISDNSRFIAYGF-------PLKHGETDGYVMQAIHVYDMEGRKIFA 173

Query: 406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTM-------CCFYTLKNHEDEVLDI 458
            T  +       F+  +  +   S        D   +          + +          
Sbjct: 174 ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPT 233

Query: 459 AFDYSGSKLATASSDQTA---NLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT 515
                         D          +       +      + +            +    
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG 293

Query: 516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
           A        + V       +      N ++ +      K V+    D     +  E  E 
Sbjct: 294 APEKGVLLKYDVKT-----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348

Query: 576 IQVL 579
            + +
Sbjct: 349 ERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score =  100 bits (248), Expect = 1e-23
 Identities = 27/355 (7%), Positives = 73/355 (20%), Gaps = 23/355 (6%)

Query: 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-VTFSPDQSTFCSCSMD 331
            +A  FS   GD I   S  +   +   +    ++         V    D          
Sbjct: 5   KFAEDFSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 332 HTARIFNTN-SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390
               +   +    +    + + G V ++    +    +  +                   
Sbjct: 64  EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND------RFEIMTVDLETG 117

Query: 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN 450
                 R+    I   T                      +     ++D+     F     
Sbjct: 118 KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177

Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLW------TVGGAVELLQTFYGHSNEVSKV--- 501
           +       AFD     L   S                   V             +     
Sbjct: 178 NSH-DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236

Query: 502 LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ 561
                  +G         +++ +    G   ++          S               +
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296

Query: 562 DTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
                 +  ++ +    +   ++++     + +  T++    D     +     +
Sbjct: 297 KGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 78.4 bits (191), Expect = 3e-16
 Identities = 14/194 (7%), Positives = 41/194 (21%), Gaps = 22/194 (11%)

Query: 206 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSG----- 260
              +   ++D++          + +       ++       SY       D         
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215

Query: 261 --HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW-------ASAKEECIQTYRG 311
              +                  P       G +D                    I     
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLV-PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 274

Query: 312 HSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLI 368
                +        + +           ++  + +    +      +  L+ S+DR  ++
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLRLSADRKTVM 330

Query: 369 TGSFDSSIVVWDIQ 382
               D  I  + ++
Sbjct: 331 VRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 73.7 bits (179), Expect = 9e-15
 Identities = 16/174 (9%), Positives = 33/174 (18%), Gaps = 17/174 (9%)

Query: 198 FGTRCLTGSYDRTCKLWDIKSG-------HEICTYRGHQNVVYAVAFS-EPYGCLTGSYD 249
                   SY       D            +                         G YD
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 250 RTCKLW-------DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAK 302
                        D      I        +         +            L  +    
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG-EFAAYYQGAPEKGVLLKYDVKT 307

Query: 303 EECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVI 356
            + +   + +  ++  S D+ T      D     F     ++  T++    P++
Sbjct: 308 RK-VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLV 360

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (268), Expect = 3e-26
 Identities = 36/339 (10%), Positives = 102/339 (30%), Gaps = 25/339 (7%)

Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR---GHQNVVYA 234
           +  ++ ++    +++I      +  L  S+D +  ++      +         +++ +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 235 VAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD 292
             F +        G+        D+           ++  +      +   DK++  S+D
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSM---------DHTARIFNTNSGQ 343
             +++              +            F   +          +   + F     +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 344 EMHTLKAHTG----PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS 399
           + +     +G             ++      S D  + V     Q    N+     +R  
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR-C 240

Query: 400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIA 459
           H+     T  +  +++  F+  +  + ++  DG    W+++T           +E   + 
Sbjct: 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVK 299

Query: 460 FDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEV 498
              S + L  A+SD T           + QT   +++ +
Sbjct: 300 IACSDNILCLATSDDTFKTNAA-----IDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (255), Expect = 2e-24
 Identities = 29/333 (8%), Positives = 85/333 (25%), Gaps = 29/333 (8%)

Query: 304 ECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA---HTGPVIS 357
           + +Q  +     ++     P +S     S D +  ++  +   +   L     +  P++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 358 LQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL 417
             F  + ++ I        ++        +  A   +        I          ++  
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN 477
                    +      A                          D + S+L    ++    
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT--------MDTNSSRLIVGMNNSQVQ 173

Query: 478 LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL---- 533
            + +    +   T      +                A +S D    +       +     
Sbjct: 174 WFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233

Query: 534 ----------LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHE 583
                            +  V+ + F P  K + +   D     W+ ++ + I+      
Sbjct: 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF- 292

Query: 584 DDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD 616
           ++        + + +  A+ D+T     ++++ 
Sbjct: 293 NEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 3/87 (3%)

Query: 531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKA---HEDDVF 587
           ++++Q      + +S +   P+  L+L  S D +  ++  +       L     ++  + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 588 SCGFNYNGDTIITASKDNTCCIWRSMN 614
            C F  N D  I         +   + 
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLI 87

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 20/182 (10%), Positives = 49/182 (26%), Gaps = 12/182 (6%)

Query: 442 MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV--GGAVELLQTFYGHSNEVS 499
           M      +  +D + DI    S S L   S D +  ++          L     + +   
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP-- 58

Query: 500 KVLDIAF-DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLS 558
            +L   F D +  ++   +         + G+          +N             +++
Sbjct: 59  -LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA 117

Query: 559 GSQDTTCRLWSTESGECIQVLKAHEDDV------FSCGFNYNGDTIITASKDNTCCIWRS 612
            S D    +    +     +   + +             + N   +I    ++    +R 
Sbjct: 118 ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRL 177

Query: 613 MN 614
             
Sbjct: 178 PL 179

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 6e-07
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 175 QRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTY-RGHQNVVY 233
           + +       +   P+ +I F        T   D     W++++  +I  + + +++ V 
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV 298

Query: 234 AVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 280
            +A S+   CL  S D         +     T   + + +Y +   E
Sbjct: 299 KIACSDNILCLATSDD-----TFKTNAAIDQTIELNASSIYIIFDYE 340

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (270), Expect = 4e-26
 Identities = 52/405 (12%), Positives = 113/405 (27%), Gaps = 75/405 (18%)

Query: 224 TYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR------------GHQN 271
             + H   +++V+    +  ++ S D   K+WD K                      H +
Sbjct: 9   AGKAHDADIFSVSACNSF-TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 272 VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-------------VTF 318
           V+ A+         + T SF   L  +   +E+  +       +             + +
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 319 SPD-----QSTFCSCSMDHTARIFNTNSGQEM------------------HTLKAHTGPV 355
                        +  +  T  I+  +   +                    +    +   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 356 ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN 415
            S+  S    ++ TG  + ++ + ++       N  ++ +   +   I  +    Q    
Sbjct: 188 TSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 416 CLFNFSNSMIASSSLDGTAKLW------DVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT 469
            + + SNS    +  +               +         H   V+ ++F+ SG  L +
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLD-IAFDYSGSKLATASSDQTAKLWTVG 528
           A  D     W V    E + T   H +++    D +A D  G  LA         L    
Sbjct: 307 AGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK--- 362

Query: 529 GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG 573
                                    + +     D + R +  E+G
Sbjct: 363 -------------KGWRSGMGADLNESLCCVCLDRSIRWF-REAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  104 bits (259), Expect = 8e-25
 Identities = 56/406 (13%), Positives = 117/406 (28%), Gaps = 81/406 (19%)

Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR------------GHQN 230
            K+H   + +++     +  ++ S D   K+WD K                      H +
Sbjct: 10  GKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67

Query: 231 VVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGHQNV----------VYAVAF 278
           V+ A+       CL  T S+      + I    E       +             +A+ +
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 279 S----EPYGDKILTGSFDKTLKLW-ASAKEECIQTYRGHSAE------------------ 315
                     +++      T  +W      +   +   + +                   
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 316 --VTFSPDQSTFCSCSMDHTARIFNTNSGQEMH------TLKAHTGPVISLQFSSDRNML 367
             V  S       +   + T +I   ++ + ++      ++  ++  + S++FS   ++L
Sbjct: 188 TSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 368 ITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIAS 427
                 +S     +          + S    S +       HS  + +  FN S   + S
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 428 SSLDGTAKLWDVRTMCCFYTLKNHEDEV----LDIAFDYSGSKLATASSDQTANLWTVGG 483
           +  DG  + WDV+T     TL  H D++      +A D  G  LA         L     
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR 366

Query: 484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGG 529
           +                            L     D++ + +   G
Sbjct: 367 SG-------------------MGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 3e-10
 Identities = 13/133 (9%), Positives = 35/133 (26%), Gaps = 17/133 (12%)

Query: 493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLW-----TVGGAVELLQTFYGHSNEVSKV 547
            H  ++     ++     S   + S D   K+W           +   + + H + +  V
Sbjct: 12  AHDADI---FSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 548 SF-------HPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIIT 600
                         LV + S       +     +  + +   + D+       +    + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 601 ASKDNTCCIWRSM 613
               N   +   +
Sbjct: 127 WGASNDRLLSHRL 139

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 15/91 (16%)

Query: 539 GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGE-----------CIQVLKAHEDDVF 587
            H  ++  VS        +S S D   ++W  +  +            +     H  DV 
Sbjct: 12  AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 588 SCG--FNYNGDTIITASKDNTCCIWRSMNRD 616
                  +    + T S       +R    D
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITRED 100

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (265), Expect = 9e-26
 Identities = 60/358 (16%), Positives = 125/358 (34%), Gaps = 21/358 (5%)

Query: 221 EICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE 280
           +  T RGH   V      E    +TG+ D+  +++D  +   +    GH   V+A+ ++ 
Sbjct: 4   QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63

Query: 281 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC-----SCSMDHTAR 335
             G  +++GS D+T+++W   K  C   + GH++ V               + S D+T  
Sbjct: 64  --GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 336 IFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQ-----FGTRNA 390
           ++       +          +      +    +         V  +         G+ + 
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN 450
                  A  K ++IL+GH+  I + +++       S+S+D T ++WD+      YTL+ 
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSG 510
           H   V  +         A A                        S   + +  I   Y  
Sbjct: 242 HTALVGLLRLSDKFLVSAAADGSIRGWDAN--------DYSRKFSYHHTNLSAITTFYVS 293

Query: 511 SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLW 568
             +  + S+    ++ +     +       ++++  V+F     LV +  +D    L 
Sbjct: 294 DNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (263), Expect = 1e-25
 Identities = 62/360 (17%), Positives = 126/360 (35%), Gaps = 24/360 (6%)

Query: 262 EICTYRGHQN-VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT--- 317
           +  T RGH   V+  + F     + ++TG+ DK ++++ S  ++ +    GH   V    
Sbjct: 4   QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60

Query: 318 FSPDQSTF-CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
           ++        S                 +      T   + +    +   ++TGS D+++
Sbjct: 61  YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 120

Query: 377 VVWDIQ-----YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD 431
            VW +         G  + Y    +     P  +        S    +   +++ S S D
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180

Query: 432 GTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTF 491
            T  +WDV  M C Y L  H D +    +D+   +  +AS D T  +W +     +    
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240

Query: 492 YGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHP 551
              +      L   F  S              +          +  Y H+N  +  +F+ 
Sbjct: 241 GHTALVGLLRLSDKFLVSA--------AADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292

Query: 552 TGKLVLSGSQDTTCRLWSTESGECIQV-LKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
           +  +++SGS +    +++  SG+ +   +    D ++S  F      +    KD    + 
Sbjct: 293 SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 2e-11
 Identities = 42/304 (13%), Positives = 94/304 (30%), Gaps = 9/304 (2%)

Query: 183 LKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG 242
           L  H   +  + +   G   ++GS DRT ++WDIK G     + GH + V  +   E   
Sbjct: 49  LSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 107

Query: 243 C---LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-DKTLKLW 298
               +TGS D T  +W +     +  +    +        E     +        +++  
Sbjct: 108 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 167

Query: 299 ASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
           +      +     ++  V            S             +    + A     I +
Sbjct: 168 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 227

Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ--EISNC 416
               +  ++ T    +++V           +A A+ + R      +          +S  
Sbjct: 228 WDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAI 287

Query: 417 LFNFSNSMIASSSLDGTAKLWDVRTM-CCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT 475
              + +  I  S  +    ++++R+       +    D++  + F      +A    D  
Sbjct: 288 TTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQ 346

Query: 476 ANLW 479
           + L 
Sbjct: 347 SFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.0 bits (151), Expect = 3e-11
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNG 595
           T  GH   V           V++G+ D   R++ + + + +  L  H+  V++  +  +G
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HG 64

Query: 596 DTIITASKDNTCCIWRSMN 614
             +++ S D T  +W    
Sbjct: 65  GILVSGSTDRTVRVWDIKK 83

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 3e-10
 Identities = 44/261 (16%), Positives = 90/261 (34%), Gaps = 42/261 (16%)

Query: 201 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGC----------------- 243
             +TGS D T  +W +     +  +    +        E                     
Sbjct: 110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 169

Query: 244 -----LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 298
                ++GSYD T  +WD+     +    GH + +Y     +    + ++ S D T+++W
Sbjct: 170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIW 228

Query: 299 ASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
                E + T +GH+A V        F   +    +      +         HT      
Sbjct: 229 DLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 288

Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH-ILTGHSQEISNCL 417
            F    N+L++GS ++   +++++                S K +H  +   + +I +  
Sbjct: 289 TFYVSDNILVSGS-ENQFNIYNLR----------------SGKLVHANILKDADQIWSVN 331

Query: 418 FNFSNSMIASSSLDGTAKLWD 438
           F    +++A+   DG + L  
Sbjct: 332 FK-GKTLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (140), Expect = 7e-10
 Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 3/187 (1%)

Query: 198 FGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDI 257
            G   ++GSYD T  +WD+     +    GH + +Y+  +         +   T      
Sbjct: 170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 229

Query: 258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT 317
               E+         +  +                           +    +   SA  T
Sbjct: 230 LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITT 289

Query: 318 FSPDQSTFCSCSMDHTARIFNTNSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSFDSSI 376
           F    +   S S ++   I+N  SG+ +H  +      + S+ F     ++     D   
Sbjct: 290 FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQS 347

Query: 377 VVWDIQY 383
            +  + +
Sbjct: 348 FLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEI-CTYRGHQNVVYAVAFSEPYGCLTGSYD 249
           + IT        L    +    +++++SG  +        + +++V F           D
Sbjct: 285 SAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKD 344

Query: 250 RTCKLWDI 257
               L  +
Sbjct: 345 GQSFLEIL 352

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 61/377 (16%), Positives = 114/377 (30%), Gaps = 29/377 (7%)

Query: 224 TYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFS 279
            +      +   A++            +    +++       ++   + H   V  V ++
Sbjct: 2   YHSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60

Query: 280 EPYGDKILTGSFDKTLKLWASAKEEC-----IQTYRGHSAEVTFSPDQSTFCSCSMDHTA 334
            P  ++I+T   D+   +W            I      +  V ++P++  F   S     
Sbjct: 61  -PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 335 RIFNTNSGQEMHTLKAHTG----PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390
            I       +    K         V+SL +  +  +L  GS D    ++    +      
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179

Query: 391 YAESTYRASHKPIHILTGHSQ--EISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTL 448
                         +    S    +    F+ + S +A  S D T  L D        TL
Sbjct: 180 APTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239

Query: 449 KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY 508
            +    +L + F    S +A         L+T   A   L +F G  +   +        
Sbjct: 240 ASETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKL-SFGGRLDVPKQSSQRGLTA 297

Query: 509 SGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK----LVLSGSQDTT 564
                   + D+ A       A   L +   H N VS++S    GK       +   D  
Sbjct: 298 RER---FQNLDKKASSEGSAAAGAGLDS--LHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352

Query: 565 CRLWSTESGE-CIQVLK 580
             +W   S E  ++ LK
Sbjct: 353 MSIWDVRSLESALKDLK 369

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (249), Expect = 1e-23
 Identities = 50/351 (14%), Positives = 104/351 (29%), Gaps = 63/351 (17%)

Query: 316 VTFSPDQSTFCSCSMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFD 373
             ++ D++    C  +H   I+  +  +  ++H LK H G V  + ++ D N ++T   D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 374 SSIVVWDIQYQF--------------------------------GTRNAYAESTYRASHK 401
            +  VW ++ +                                    +            
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 402 PIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT------------------MC 443
             HI       + +  ++ ++ ++A+ S D   +++                        
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 192

Query: 444 CFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLD 503
             +   +    V  + F  +GS++A  S D T  L       +        ++E   +L 
Sbjct: 193 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVATLASETLPLLA 248

Query: 504 IAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDT 563
           + F    S +A         L+T   A   L +F G  +   + S           + D 
Sbjct: 249 VTFITESSLVAAGHDCFP-VLFTYDSAAGKL-SFGGRLDVPKQSSQRGLTARERFQNLDK 306

Query: 564 TCRLWSTESGECIQVLKAHEDDV----FSCGFNYNGDTIITASKDNTCCIW 610
                 + +     +   H++ V       G         T   D    IW
Sbjct: 307 KASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.5 bits (181), Expect = 6e-15
 Identities = 34/279 (12%), Positives = 81/279 (29%), Gaps = 34/279 (12%)

Query: 351 HTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS 410
              P+    ++ DR  +     +  + +++                      +H L  H+
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--------------KWVQVHELKEHN 51

Query: 411 QEISNCLFNFSNSMIASSSLDGTAKLWDVRTMC--CFYTLKNHEDEVLDIAFDYSGSKLA 468
            +++   +   ++ I +   D  A +W ++         +         + +  +  K A
Sbjct: 52  GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111

Query: 469 TASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG 528
             S  +  ++       +     +      S VL + +  +   LA  S D   ++++  
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171

Query: 529 GA-----------------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE 571
                               EL+         V  V F   G  V   S D+T  L   +
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231

Query: 572 SGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
               +  L +    + +  F      +     D    ++
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.6 bits (163), Expect = 1e-12
 Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 540 HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG--ECIQVLKAHEDDVFSCGFNYNGDT 597
               +S  +++     +     +    ++         +  LK H   V    +  + + 
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65

Query: 598 IITASKDNTCCIWRSMN 614
           I+T   D    +W    
Sbjct: 66  IVTCGTDRNAYVWTLKG 82

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 16/120 (13%)

Query: 201 RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIK-- 258
             +   +D    L+   S     ++ G  +V    +          +     +  D K  
Sbjct: 256 SLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQR------GLTARERFQNLDKKAS 309

Query: 259 ----SGHEICTYRGHQNVVYAVAFSEPYGD---KILTGSFDKTLKLW-ASAKEECIQTYR 310
               +         H+N V  ++          +  T   D  + +W   + E  ++  +
Sbjct: 310 SEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLK 369

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 4e-24
 Identities = 49/346 (14%), Positives = 96/346 (27%), Gaps = 32/346 (9%)

Query: 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFCSCS 329
            Y+   +     + +    D  +          I T   H   V     S       +  
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG 70

Query: 330 MDHTARIFNTNSGQEMHTL-----KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQ 384
                ++++ +       +           + S +   D   LI G   S++ +WD+   
Sbjct: 71  -KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129

Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC 444
                A   S+  A +                  N +   + + +L    +       C 
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189

Query: 445 FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504
             +    +                T   D T   W +              +  S++  +
Sbjct: 190 DISNDGTKLW--------------TGGLDNTVRSWDLRE-----GRQLQQHDFTSQIFSL 230

Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
            +  +G  LA        ++  V    +     + H + V  + F   GK  +S  +D  
Sbjct: 231 GYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNL 288

Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
              W T  G  I   K     V SC  + +   I+T S D    ++
Sbjct: 289 LNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (223), Expect = 2e-20
 Identities = 53/313 (16%), Positives = 92/313 (29%), Gaps = 37/313 (11%)

Query: 203 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE 262
           +    D        +   +I T   H  VV AV  S P   +        K+WDI     
Sbjct: 26  VPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN 84

Query: 263 ICT-----YRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE-- 315
                        N + +     P G  ++ G    TL +W  A           S+   
Sbjct: 85  KSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143

Query: 316 ---VTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF 372
              +  SPD     SC  D    +++ ++   +   + HT     +  S+D   L TG  
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203

Query: 373 DSSIVVWDI------------------------QYQFGTRNAYAESTYRASHKPIHILTG 408
           D+++  WD+                        ++      +        +    + L  
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL 263

Query: 409 HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLA 468
           H   + +  F +      S+  D     W        +  K     VL          + 
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV 322

Query: 469 TASSDQTANLWTV 481
           T S D+ A ++ V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 6e-20
 Identities = 48/334 (14%), Positives = 89/334 (26%), Gaps = 33/334 (9%)

Query: 244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKE 303
           +    D        +   +I T   H  VV AV  S      + TG     +K+W  +  
Sbjct: 26  VPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTIS-NPTRHVYTGG-KGCVKVWDISHP 82

Query: 304 ECIQT-----YRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
                            +      PD  T        T  I++  +       +      
Sbjct: 83  GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT---- 138

Query: 356 ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN 415
                           +  +I            +         +   +    GH+   S 
Sbjct: 139 ----------SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188

Query: 416 CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT 475
              +   + + +  LD T + WD+R         +   ++  + +  +G  LA       
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSN 247

Query: 476 ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535
             +  V          Y      S VL + F Y G    +   D     W       + Q
Sbjct: 248 VEVLHVNK-----PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ 302

Query: 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWS 569
           +    S+ V         K +++GS D    ++ 
Sbjct: 303 S--KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (186), Expect = 1e-15
 Identities = 35/305 (11%), Positives = 74/305 (24%), Gaps = 68/305 (22%)

Query: 185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICT-----YRGHQNVVYAVAFSE 239
           +H   +  +T         TG      K+WDI                  N + +     
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 240 -----PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
                  G    +                 T         A++          +      
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167

Query: 295 LKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK----- 349
             L         Q +   ++ +  S D +   +  +D+T R ++   G+++         
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI 227

Query: 350 -----------------------------------AHTGPVISLQFSSDRNMLITGSFDS 374
                                               H   V+SL+F+      ++   D+
Sbjct: 228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287

Query: 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA 434
            +  W                       I   +  S  + +C  +  +  I + S D  A
Sbjct: 288 LLNAWRTP----------------YGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKA 330

Query: 435 KLWDV 439
            +++V
Sbjct: 331 TVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (185), Expect = 1e-15
 Identities = 29/179 (16%), Positives = 62/179 (34%), Gaps = 4/179 (2%)

Query: 207 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY 266
            D    +WD+ +   +  ++GH +    +  S     L                      
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220

Query: 267 RGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY--RGHSAEVTFSPDQST 324
               + ++++ +  P G+ +  G     +++    K +  Q +        + F+     
Sbjct: 221 HDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW 279

Query: 325 FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQY 383
           F S   D+    + T  G  +   K  +  V+S   S D   ++TGS D    V+++ Y
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 41/281 (14%), Positives = 76/281 (27%), Gaps = 18/281 (6%)

Query: 331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA 390
           D           ++++TL  H   V ++  S+    + TG     + VWDI         
Sbjct: 31  DALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI--------- 79

Query: 391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN 450
                   S             I +C        +       T  +WD+         + 
Sbjct: 80  --SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL 137

Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSG 510
                   A   S       S     N+                  +         D S 
Sbjct: 138 TSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISN 193

Query: 511 SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570
                 +      + +           +  ++++  + + PTG+ +  G + +   +   
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253

Query: 571 ESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR 611
              +  Q+   HE  V S  F Y G   ++  KDN    WR
Sbjct: 254 NKPDKYQL-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 17/156 (10%), Positives = 35/156 (22%), Gaps = 9/156 (5%)

Query: 463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTA 522
            G                +      + T   H   V  V           + T       
Sbjct: 20  DGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAV---TISNPTRHVYTGG-KGCV 74

Query: 523 KLWTV----GGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQV 578
           K+W +      +           N +      P G  ++ G + +T  +W   +      
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 579 LKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
            +             + D+ +  S  +   I     
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL 170

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 98.1 bits (242), Expect = 5e-23
 Identities = 27/305 (8%), Positives = 71/305 (23%), Gaps = 11/305 (3%)

Query: 307 QTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM 366
           +T RG +  +  +P       C+   +       S  +      H+      + S     
Sbjct: 14  RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIA 426
             +G    ++ +WD               +    K I   +   +  +          + 
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESKRIAAVGEGRERFGHVF 131

Query: 427 SSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE 486
                 +      +                 I+     +                     
Sbjct: 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF 191

Query: 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
           +    Y     +                  +     +  +             HS  V  
Sbjct: 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--------LKNVAHSGSVFG 243

Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED-DVFSCGFNYNGDTIITASKDN 605
           +++ P G  + S S D T ++W+  + +  + +      +    G  +    +++ S + 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 606 TCCIW 610
                
Sbjct: 304 FINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 91.1 bits (224), Expect = 1e-20
 Identities = 34/292 (11%), Positives = 69/292 (23%), Gaps = 7/292 (2%)

Query: 191 TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG--CLTGSY 248
             +     G +    +   +     + S  +   Y  H +       S P G  C +G  
Sbjct: 21  VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDV 78

Query: 249 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT 308
               ++WD      I               S     K +    +   +       +   +
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138

Query: 309 YRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLI 368
               + +           S      +   +                              
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR-- 196

Query: 369 TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS 428
                S              N    +              HS  +    ++   + IAS+
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256

Query: 429 SLDGTAKLWDVRTMCCFYTLKNHED-EVLDIAFDYSGSKLATASSDQTANLW 479
           S D T K+W+V T+    T+      E   +   ++   L + S++   N  
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.9 bits (200), Expect = 1e-17
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 19/308 (6%)

Query: 270 QNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT---FSPDQSTFC 326
           +     +  + P GDKI   +   ++           + Y  HS + T    SP      
Sbjct: 17  RGTAVVLGNT-PAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74

Query: 327 SCSMDHTARIFNTNSGQEM--HTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQ 384
           S  +    RI++T     +   T+   +GPV  + + S+   +               + 
Sbjct: 75  SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD 134

Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC 444
            GT N       RA +      +   + IS    N             +      + +  
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194

Query: 445 FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504
                +                     +                     +      V  +
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD----------SLKNVAHSGSVFGL 244

Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSN-EVSKVSFHPTGKLVLSGSQDT 563
            +   G+K+A+AS+D+T K+W V    ++ +T    +  E  ++    T + ++S S + 
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 564 TCRLWSTE 571
                + E
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.2 bits (162), Expect = 1e-12
 Identities = 38/274 (13%), Positives = 78/274 (28%), Gaps = 32/274 (11%)

Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICT--YRGHQNVVYAVAFS 238
           ++   H    T       G  C +G      ++WD      I           V  +++ 
Sbjct: 52  EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

Query: 239 EPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 298
                +    +   +   +       +         A+   +    +             
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171

Query: 299 ASAKEECIQTYRGH------SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHT----- 347
           A  +    +              V ++PD S F S   D T  ++N   G +        
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231

Query: 348 --LKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI 405
               AH+G V  L +S D   + + S D +I +W++                A+ K    
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV----------------ATLKVEKT 275

Query: 406 LTGHSQEISNCL-FNFSNSMIASSSLDGTAKLWD 438
           +   ++     L   ++   + S S +G     +
Sbjct: 276 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 59.9 bits (143), Expect = 2e-10
 Identities = 26/230 (11%), Positives = 55/230 (23%), Gaps = 1/230 (0%)

Query: 153 SVITQLEQSIMKLQKKLKEGFAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCK 212
           +V          + K     F+   +                  +            +  
Sbjct: 81  NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140

Query: 213 LWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNV 272
               ++                ++ S+                      +      +   
Sbjct: 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD 200

Query: 273 VYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDH 332
               A +   G  +L    D T              + G    +T+SPD +   S S D 
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 260

Query: 333 TARIFNTNSGQEMHTLKAHTG-PVISLQFSSDRNMLITGSFDSSIVVWDI 381
           T +I+N  + +   T+   T      L     +  L++ S +  I   + 
Sbjct: 261 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.2 bits (123), Expect = 7e-08
 Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 1/73 (1%)

Query: 542 NEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITA 601
                +   P G  +   +  T+       S    ++   H         + +G    + 
Sbjct: 18  GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 602 SKDNTCCIWRSMN 614
                  IW +  
Sbjct: 77  DVHGNVRIWDTTQ 89

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 4e-07
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 500 KVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG 559
             + +    +G K+   +   +     VG      + +  HS++ +     P+G    SG
Sbjct: 19  TAVVLGNTPAGDKIQYCNGT-SVYTVPVGSL-TDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 560 SQDTTCRLWSTESGECIQVL--KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
                 R+W T     I           V    ++     I    +         + 
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 94.8 bits (234), Expect = 1e-21
 Identities = 28/346 (8%), Positives = 73/346 (21%), Gaps = 40/346 (11%)

Query: 276 VAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE----VTFSPDQST-FCSCSM 330
            A      + ++  ++   L +   A +   ++              +PD  T +   + 
Sbjct: 2   PALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60

Query: 331 DHTARIFNTNSGQEMHTL------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQ 384
                  + ++ +                 + S   S D   +      +  +      +
Sbjct: 61  YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120

Query: 385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC 444
                 ++ +           +          L   ++      +        DV+T   
Sbjct: 121 PPRLEVFSTAD----GLEAKPVRTFPMPRQVYLMRAADDGSLYVA-GPDIYKMDVKTGKY 175

Query: 445 FYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI 504
              L    +                  S +                              
Sbjct: 176 TVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLY--------------------TIA 214

Query: 505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT 564
            F       ATA          +       Q F   +         P     + G  +  
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR- 273

Query: 565 CRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
              +  +  + I+     +   +   F+  GD +      N   ++
Sbjct: 274 LAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 81.7 bits (200), Expect = 2e-17
 Identities = 38/400 (9%), Positives = 87/400 (21%), Gaps = 83/400 (20%)

Query: 199 GTRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYG---CLTGSYDRTCKL 254
               +  +Y     + D+ S     +     +        + P      +  ++      
Sbjct: 8   HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA-PDNRTAYVLNNHYGDIYG 66

Query: 255 WDIKSGHEIC------TYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT 308
            D+ +                   +Y+ A S P G ++                      
Sbjct: 67  IDLDTCKNTFHANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDH--------- 116

Query: 309 YRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGP--VISLQFSSDRNM 366
                                      +F+T  G E   ++    P  V  ++ + D ++
Sbjct: 117 ------------------YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL 158

Query: 367 LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIA 426
            + G     + V                    + K    L   +                
Sbjct: 159 YVAGPDIYKMDVK-------------------TGKYTVALPLRNWNRKGYSAPDVLYFWP 199

Query: 427 SSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVE 486
             S      +                       F       ATA          +     
Sbjct: 200 HQSPRHEFSMLYTIA-----------------RFKDDKQDPATADLLYGYLSVDLKTGKT 242

Query: 487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSK 546
             Q F   +                       ++ AK        +L++      +    
Sbjct: 243 HTQEFADLTELYFTG---LRSPKDPNQIYGVLNRLAKYDLKQR--KLIKAA-NLDHTYYC 296

Query: 547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDV 586
           V+F   G  +  G       +++ ++ E ++ +K    D+
Sbjct: 297 VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.1 bits (216), Expect = 8e-20
 Identities = 44/306 (14%), Positives = 91/306 (29%), Gaps = 25/306 (8%)

Query: 178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAF 237
           E  K +  H   +T +T +      ++GSYD     W   S H+      H N++ ++  
Sbjct: 4   EVLKTISGHNKGITALTVNPL----ISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDN 54

Query: 238 SEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKL 297
           S+              +    +       +        VA +   G   +  + D  L L
Sbjct: 55  SKA--------QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL 106

Query: 298 WASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQ-EMHTLKAHTGPVI 356
            +   +                            +T ++F  +  +              
Sbjct: 107 QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS 166

Query: 357 SLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNC 416
            +  S            +  V+  I            S +      I+ ++    E    
Sbjct: 167 YISISPSETY-----IAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221

Query: 417 LFNFSNSMIASSSLDGTAKLWDVRT-MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQT 475
                  ++A+ SLD    ++ V+  M     L  H+D V ++ ++ + S L ++ +D  
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE-TPSTLVSSGADAC 280

Query: 476 ANLWTV 481
              W V
Sbjct: 281 IKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.7 bits (202), Expect = 4e-18
 Identities = 37/315 (11%), Positives = 89/315 (28%), Gaps = 35/315 (11%)

Query: 260 GHE--ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVT 317
           GH+  + T  GH   + A+  +      +++GS+D  +  W+S+       ++ HS  + 
Sbjct: 1   GHDEVLKTISGHNKGITALTVN-----PLISGSYDGRIMEWSSSS-----MHQDHSNLIV 50

Query: 318 ---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS 374
               S  Q        D       T          A           ++ + L+     +
Sbjct: 51  SLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFT 110

Query: 375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTA 434
             ++  ++             Y A            +     +     + + +     + 
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 435 KLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH 494
              +          K    ++       S     T                         
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT-------------------SKINAI 211

Query: 495 SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK 554
           S + ++      +     +AT S D    +++V   +++++    H + V+ + +     
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 271

Query: 555 LVLSGSQDTTCRLWS 569
           LV S   D   + W+
Sbjct: 272 LV-SSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.7 bits (202), Expect = 4e-18
 Identities = 38/311 (12%), Positives = 95/311 (30%), Gaps = 27/311 (8%)

Query: 219 GHE--ICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAV 276
           GH+  + T  GH   + A+  +     ++GSYD     W   S H+      H N++ ++
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52

Query: 277 AFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARI 336
             S+               +  + + ++ ++       E    P  ++  +         
Sbjct: 53  DNSKAQ-------------EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 99

Query: 337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY 396
            +     +  T        ++   S+        +           ++        +   
Sbjct: 100 DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT 159

Query: 397 RASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVL 456
               KP +I    S+            ++                      +     E  
Sbjct: 160 PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG 219

Query: 457 DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATA 516
               +     +AT S D    +++V   +++++    H + V+   ++ ++ + S L ++
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVN---NLLWE-TPSTLVSS 275

Query: 517 SSDQTAKLWTV 527
            +D   K W V
Sbjct: 276 GADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.3 bits (188), Expect = 3e-16
 Identities = 50/315 (15%), Positives = 97/315 (30%), Gaps = 36/315 (11%)

Query: 302 KEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS 361
            +E ++T  GH+  +T +   +   S S D     ++++S  +      H+  ++SL  S
Sbjct: 2   HDEVLKTISGHNKGIT-ALTVNPLISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNS 55

Query: 362 SDRNMLITGSFDSSIVVWDIQYQFGTRN----AYAESTYRASHKPIHILTGHSQEISNCL 417
             +        D+  V    +++FG++     A  +           +L   S       
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN 477
               NS  ++ SL        +         K  + EV         +K +  S   +  
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 478 LWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537
               G  +  +  +   S EV                                       
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI------------------------NAI 211

Query: 538 YGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES-GECIQVLKAHEDDVFSCGFNYNGD 596
                E           LV +GS DT   ++S +   + I+ L AH+D V +  +     
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS- 270

Query: 597 TIITASKDNTCCIWR 611
           T++++  D     W 
Sbjct: 271 TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (122), Expect = 7e-08
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 529 GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFS 588
           G  E+L+T  GH+  ++ ++ +P    ++SGS D     WS+ S         H + + S
Sbjct: 1   GHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVS 51

Query: 589 CGFNYNGDTIITASKDNTCCIWRSMN 614
              +   +    +  D       + +
Sbjct: 52  LDNSKAQEYSSISWDDTLKVNGITKH 77

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 87.7 bits (215), Expect = 1e-19
 Identities = 38/305 (12%), Positives = 95/305 (31%), Gaps = 17/305 (5%)

Query: 181 KMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSE 239
           ++   H   +T ++    G    +   +     WDI +G     +   H  ++  +  + 
Sbjct: 6   QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 240 PYGCLTGSYDRTCKLWDI-KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW 298
                T S+D   K+     SG +      ++     +  +      I   +  K + ++
Sbjct: 66  KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 299 ASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISL 358
           +  K   +      S     +  Q                + +         H   + S+
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185

Query: 359 QFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLF 418
            FS++   L+       ++ + +   F                  +  T H+ +++   +
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNF-------------ELAHTNSWTFHTAKVACVSW 232

Query: 419 NFSNSMIASSSLDGTAKLWDVRT--MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTA 476
           +  N  +A+ SLD +  +W++             H    ++     + + + +A  D   
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 292

Query: 477 NLWTV 481
             W V
Sbjct: 293 KFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.6 bits (199), Expect = 1e-17
 Identities = 43/314 (13%), Positives = 94/314 (29%), Gaps = 26/314 (8%)

Query: 304 ECIQTYRGHSAEVT---FSPDQSTFCSCSMDHTARIFNTNSGQEMHTL-KAHTGPVISLQ 359
              Q   GH+  +T    S D  T  S   +     ++ ++G         H   +  ++
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 360 FSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFN 419
            +  +  L T S+D  + V          +    +   +    + +       ++ C   
Sbjct: 63  TT-SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK- 120

Query: 420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW 479
                                      T          +A       +A    D   +++
Sbjct: 121 -----------------HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 163

Query: 480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYG 539
            + GA         H  E++ V   + + +       S             +    ++  
Sbjct: 164 KLSGASVSEVKTIVHPAEITSV-AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 222

Query: 540 HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL--KAHEDDVFSCGFNYNGDT 597
           H+ +V+ VS+ P    + +GS D +  +W+        ++   AH     +     N  T
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282

Query: 598 IITASKDNTCCIWR 611
           I++A +D+    W 
Sbjct: 283 IVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 76.2 bits (185), Expect = 9e-16
 Identities = 35/308 (11%), Positives = 84/308 (27%), Gaps = 21/308 (6%)

Query: 224 TYRGHQNVVYAVAFSEPYG--CLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSE 280
              GH   + A++ S   G    +   +     WDI +G     +   H  ++  +  + 
Sbjct: 7   VRYGHNKAITALSSS-ADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 65

Query: 281 PYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTN 340
                           L+  + ++ ++      + V  S   +   S      A   + +
Sbjct: 66  KG-------------DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 112

Query: 341 SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH 400
                            L            +  +      +  Q    + Y  S    S 
Sbjct: 113 IAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE 172

Query: 401 KPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF 460
               +       ++             S       + +   +    +   H  +V  +++
Sbjct: 173 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW 232

Query: 461 DYSGSKLATASSDQTANLWTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD 519
                +LAT S D +  +W +   +   +     H+      ++     + + + +A  D
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS---VNSVIWLNETTIVSAGQD 289

Query: 520 QTAKLWTV 527
              K W V
Sbjct: 290 SNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 67.3 bits (162), Expect = 7e-13
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL-KAHEDDVFSCG 590
            + Q  YGH+  ++ +S    GK + S   +     W   +G   +V    H   +    
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 591 FNYNGDTIITASKDNTCCIWRSMNR 615
               GD    +  D+   +    + 
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSG 87

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.1 bits (133), Expect = 3e-09
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 3/129 (2%)

Query: 486 ELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVS 545
            + Q  YGH+  ++    ++    G  L +A ++     W +   +        H+  ++
Sbjct: 3   SIDQVRYGHNKAIT---ALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59

Query: 546 KVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDN 605
            +     G L      D    + +  SG       A++      G   + D  I  +   
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119

Query: 606 TCCIWRSMN 614
                 S  
Sbjct: 120 KHIAIYSHG 128

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.1 bits (125), Expect = 4e-08
 Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 305 CIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL--KAHTGPVISLQFSS 362
               +    A V++SPD     + S+D++  ++N N   +   +   AH    ++     
Sbjct: 219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 278

Query: 363 DRNMLITGSFDSSIVVWDIQY 383
           +   +++   DS+I  W++ +
Sbjct: 279 NETTIVSAGQDSNIKFWNVPF 299

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 82.5 bits (202), Expect = 1e-17
 Identities = 29/338 (8%), Positives = 69/338 (20%), Gaps = 44/338 (13%)

Query: 284 DKILTGSFDKTLKLWASAKEECIQTYRGHSA-----EVTFSPDQST-FCSCSMDHTARIF 337
           D IL  +    L +  + K    +      A         +P     + + +   +    
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 338 NTNSGQEMHTLKAHTGPVI-----SLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA 392
           +  +G+ +  +   T             S D   L        + +   + Q        
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRV---- 117

Query: 393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHE 452
            + Y A            ++I+   +    S +     D    + D              
Sbjct: 118 -ALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL--HVMDPEAGTLVEDKPIQS 174

Query: 453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSK 512
            E    A     +                             S+ V              
Sbjct: 175 WEAETYAQPDVLAVWNQ-----------------------HESSGVMATPFYTARKDIDP 211

Query: 513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES 572
               +         +      ++            + +P                +  E 
Sbjct: 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEK 269

Query: 573 GECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
              I+ +       +S   + +G T+           +
Sbjct: 270 NASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 78.7 bits (192), Expect = 2e-16
 Identities = 25/305 (8%), Positives = 60/305 (19%), Gaps = 31/305 (10%)

Query: 203 LTGSYDRTCKLWDIKSGHEICTYR--GHQNVVYAVAFSEPYG---CLTGSYDRTCKLWDI 257
           L  +      + D +                      + P G     T +   +    D+
Sbjct: 5   LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDL 63

Query: 258 KSGHEICTYRGHQN-----VVYAVAFSEPYGDKILTGSFDKTLKLWASA----------- 301
            +G  +              ++  A S P G  +        L+L               
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 302 ---KEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL----KAHTGP 354
                            + ++ D S       D         +  E   +          
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 355 VISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS 414
              L   +        +        DI     T       T       + +      ++ 
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ 474
                 + +   +       + +D+        +         +     GS +    +  
Sbjct: 243 YFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALG 301

Query: 475 TANLW 479
               +
Sbjct: 302 DLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 8/159 (5%)

Query: 211 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ 270
               D+ +        G     +  A  +       +Y       D+++G          
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 271 NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-GHSAE-VTFSPDQSTFCSC 328
           +V Y      P   +         L+ +   K   I+     HS   V  S D ST    
Sbjct: 240 DVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQ----FSSD 363
                   ++  + ++   +       +SL     F+ D
Sbjct: 298 GALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 80.2 bits (196), Expect = 7e-17
 Identities = 33/324 (10%), Positives = 69/324 (21%), Gaps = 37/324 (11%)

Query: 204 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFS-----------EPYGCLTGSYDRTC 252
             +      + D ++G  I    G    +     +                  G      
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYV 80

Query: 253 KLWDIKSGHEICTYRGHQNVVYAVAFS------EPYGDKILTGSF--DKTLKLWASAKEE 304
           +++D  +              + V          P G  +L   F     + +     + 
Sbjct: 81  EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140

Query: 305 CIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTG------PVISL 358
             +          F     TF     D +       +                   +   
Sbjct: 141 FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHP 200

Query: 359 QFSSDRNMLITGSFDSSIVVWDIQ------YQFGTRNAYAESTYRASHKPIHILTGHSQE 412
            +S     L+  ++   I   D+                AE            +  H   
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 413 ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKL--ATA 470
               L           +      + D +T       +    E+  I        L  A +
Sbjct: 261 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALS 319

Query: 471 SSDQTANLWTVGGAVELLQTFYGH 494
           + D+T  +       E L++    
Sbjct: 320 TGDKTLYIHDAESG-EELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 71.4 bits (173), Expect = 5e-14
 Identities = 22/283 (7%), Positives = 63/283 (22%), Gaps = 32/283 (11%)

Query: 196 DKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNV-------VYAVAFSEPYGCL---T 245
               +R   G      +++D  +                     +  + +     L    
Sbjct: 65  STVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQ 124

Query: 246 GSYDRTCKLWDIKSGHEICTYRGHQNV-------VYAVAFSEPYGDKILTGSFDKTLKLW 298
            S      + D++                                   +    + T ++ 
Sbjct: 125 FSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 184

Query: 299 ASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSG--QEMHTLKAHTGPVI 356
            +                 +S         +        + +SG  + +  ++A T    
Sbjct: 185 HTEVFHPE--DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER 242

Query: 357 SLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYR----ASHKPIHILTGHSQE 412
           +  +       +        +   +  +   R+  A          + + +       + 
Sbjct: 243 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI 302

Query: 413 ISNCLFNFS----NSMIASSSLDGTAKLWDVRTMCCFYTLKNH 451
            S    N S      + A S+ D T  + D  +     ++   
Sbjct: 303 DS---INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 32/219 (14%)

Query: 177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR------GHQN 230
            E     +   +P     F            D +       +                + 
Sbjct: 136 LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF 195

Query: 231 VVYAVAFSEPYGCL-TGSYDRTCKLWDIKSG--HEICTYRGHQNVVYAVAF--------- 278
           ++   A+S+  G L   +Y       D+ SG    +           A  +         
Sbjct: 196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255

Query: 279 ----------SEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQST-- 324
                          D+    +  + + +  +   E +  +        +  S D+    
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315

Query: 325 FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD 363
           +   + D T  I +  SG+E+ ++         +  +  
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.4 bits (191), Expect = 2e-16
 Identities = 36/318 (11%), Positives = 85/318 (26%), Gaps = 22/318 (6%)

Query: 307 QTYRGHSAEVTFSPDQSTFCSCSMDHTA-RIFNTNSG--QEMHTLKAH-TGPVISLQFS- 361
            T R  +  +++ P  +            R  +        +     H +  V +++FS 
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 362 -SDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF 420
                 L +G     ++VW   +   + +                    +  IS+  ++F
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPISDISWDF 125

Query: 421 SNSMIASSSL--DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANL 478
               +       D         +      +  H   +       S    +    D  + +
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185

Query: 479 WTVGGAVELLQTFY---GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ 535
           +  G   +   +        + V  V              +    +      G  ++ ++
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245

Query: 536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVF--SCGFNY 593
                             +   +   D T R+W   + +C+Q     +  +     G   
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305

Query: 594 NGD-TIITASKDNTCCIW 610
            G+  II+ S D T   +
Sbjct: 306 TGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.5 bits (186), Expect = 1e-15
 Identities = 33/309 (10%), Positives = 78/309 (25%), Gaps = 22/309 (7%)

Query: 191 TNITFDKFGTRCLTGSYDRTC-KLWDIKSG--HEICTYRGHQ-NVVYAVAFSEPYG---C 243
           T++++D                +  D        +  + GH  +VV  V FS   G    
Sbjct: 21  THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYL 80

Query: 244 LTGSYDRTCKLWDIKSGHEICT--------YRGHQNVVYAVAFSEPYGDKILTGSFDKTL 295
            +G       +W      E  +        ++     +  +++    G ++      +  
Sbjct: 81  CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDN 139

Query: 296 KLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV 355
                + +               +             T     +    +    K      
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199

Query: 356 ISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN 415
              +  S    +         V+     +  +        +    +         Q    
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE---PVQGGIF 256

Query: 416 CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS---GSKLATASS 472
            L    +   A+   D T ++WDV T  C       + ++ +           ++ + S 
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 473 DQTANLWTV 481
           D T N + +
Sbjct: 317 DGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.5 bits (160), Expect = 2e-12
 Identities = 29/320 (9%), Positives = 82/320 (25%), Gaps = 26/320 (8%)

Query: 226 RGHQNVVYAVAFSEP-----YGCLTGSYDRTCKLWDIKSGHEICTYRGHQ-NVVYAVAFS 279
              +N    +++        Y C   ++ R     D      +  + GH  +VV  V FS
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGD-SKVPPVVQFTGHGSSVVTTVKFS 72

Query: 280 -EPYGDKILTGSFDKTLKLWASAKEECIQT--------YRGHSAEVT---FSPDQSTFCS 327
                  + +G     + +W    ++   +        ++  +  ++   +  +    C 
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 328 CSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGT 387
                       +        +              ++  +                   
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192

Query: 388 RNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT 447
           + + ++ T+      +  +          +   S+  I                +     
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKI------SCFDGKSGEFLKYIED 246

Query: 448 LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD 507
            +      +         K AT  +D T  +W V  + + +Q +     ++         
Sbjct: 247 DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKWTLDKQQLGNQQVGVVA 305

Query: 508 YSGSKLATASSDQTAKLWTV 527
               ++ + S D T   + +
Sbjct: 306 TGNGRIISLSLDGTLNFYEL 325

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 75.2 bits (184), Expect = 6e-15
 Identities = 39/338 (11%), Positives = 77/338 (22%), Gaps = 34/338 (10%)

Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQ-- 343
           T      + L   +  E         A      S           D    + +    +  
Sbjct: 37  TLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT 96

Query: 344 ---EMHTLKAHTGPVISLQFSSDRNMLI-TGSFDSSIVVWD------IQYQFGTRNAYAE 393
              E+           S     +    I    +    V+ D       + Q      Y E
Sbjct: 97  TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE 156

Query: 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED 453
             Y    +   IL  H          +    I +    G   L D   +    T +   +
Sbjct: 157 QEYHPEPRVAAILASH----------YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206

Query: 454 EVL-DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSK 512
             L D   D S     TA++ +   +       +L+                 F +    
Sbjct: 207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 266

Query: 513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES 572
              A+S        + G     +    ++ ++        G  +   +   +  L+    
Sbjct: 267 PVWATSHMGDDSVALIGTDP--EGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY---- 320

Query: 573 GECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIW 610
                 L    +   S    ++   +     D      
Sbjct: 321 --VDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTL 355

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 23/198 (11%), Positives = 47/198 (23%), Gaps = 15/198 (7%)

Query: 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANL 478
           +  N    +    G   L D  T      L      V       SG  L     D   N+
Sbjct: 29  DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNM 87

Query: 479 WTV-GGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537
             +       +      S   S        +        +      +   G  +E  +  
Sbjct: 88  IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147

Query: 538 YGHSNEVSKVSFHPTGK------------LVLSGSQDTTCRLWSTESGECIQVLKAHEDD 585
                   +  +HP  +             +++  +     L        ++  +   + 
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 207

Query: 586 VFSCG-FNYNGDTIITAS 602
               G  + +    ITA+
Sbjct: 208 FLHDGGLDGSHRYFITAA 225

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 28/409 (6%), Positives = 77/409 (18%), Gaps = 92/409 (22%)

Query: 189 PLTNITFDKFGTR---CLTGSYDRTCKLW--DIKSGHEICTYRGHQNVVYAV-------A 236
              +        R    L   +  T + W      G  +    G    +          A
Sbjct: 21  SSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFA 80

Query: 237 FSEPYG--CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKT 294
            +         G      +++D  +   I                               
Sbjct: 81  LASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP------------------------- 115

Query: 295 LKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSM-DHTARIFNTNSGQEMHTLKAHTG 353
                   +    +       +      +           A   +     +    K+ + 
Sbjct: 116 --------DAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASC 167

Query: 354 PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI 413
             I             GS  +S+   D           A +   A           +   
Sbjct: 168 FHI---HPGAAATHYLGSCPASLAASD----------LAAAPAAAGIVGAQCTGAQNCSS 214

Query: 414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSD 473
                N+   ++ + +                  +  +E       F  +G ++     +
Sbjct: 215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274

Query: 474 QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVEL 533
               +           +    +   S  +  +    G      S                
Sbjct: 275 TDGIMILTVEHSR---SCLAAAENTS-SVTAS---VGQTSGPIS---------------- 311

Query: 534 LQTFYGHSNEVSKVSFHPTGK--LVLSGSQDTTCRLWSTESGECIQVLK 580
                 + ++   +     G      + +      ++   S +    ++
Sbjct: 312 ------NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 33/271 (12%), Positives = 66/271 (24%), Gaps = 25/271 (9%)

Query: 350 AHTGPVISLQFSSD-RNMLIT--GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL 406
           A  G        +  R   IT    F  +   W      G            +   + + 
Sbjct: 17  ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLG----HSLGAFLSLAVA 72

Query: 407 TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLD-------IA 459
                +    L + S +  A        +++D  T      ++  +            I 
Sbjct: 73  GHSGSDF--ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130

Query: 460 FDYSGSKLATAS-SDQTANLWTV--GGAVELLQTFYG-HSNEVSKVLDIAFDYSGSKLAT 515
              S + L         A   +V      +L ++    H +  +           S  A+
Sbjct: 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAAS 190

Query: 516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC 575
             +   A    VG      Q     +        +  G LV + +               
Sbjct: 191 DLAAAPAAAGIVGA-----QCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245

Query: 576 IQVLKAHEDDVFSCGFNYNGDTIITASKDNT 606
              +  +E    +  F   G  ++   K+  
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 62.3 bits (150), Expect = 6e-11
 Identities = 20/291 (6%), Positives = 58/291 (19%), Gaps = 36/291 (12%)

Query: 182 MLKSHLLPLTNITFD--------KFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVY 233
                 L L                  R   G      +++D  +   I          +
Sbjct: 61  HSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF 120

Query: 234 AVAFSEPYGCL---------TGSYDRTCKLWDIKSGHEICTYRGHQNVV-------YAVA 277
           +V                              +    +    +                 
Sbjct: 121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYL 180

Query: 278 FSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIF 337
            S P        +          A+    Q     +     +       + +        
Sbjct: 181 GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA--AQANYPGMLVWAVASSILQGDI 238

Query: 338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTY- 396
                     +  +     +  F S    ++    ++  ++        +  A AE+T  
Sbjct: 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298

Query: 397 --RASHKPIHILTGHSQEISNCLFNFS----NSMIASSSLDGTAKLWDVRT 441
              +  +    ++      +      +    +   A+S+      ++D  +
Sbjct: 299 VTASVGQTSGPISNGHDSDA---IIAAQDGASDNYANSAGTEVLDIYDAAS 346

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 68.4 bits (166), Expect = 8e-13
 Identities = 34/369 (9%), Positives = 78/369 (21%), Gaps = 58/369 (15%)

Query: 288 TGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSCSMDHTARIFNTNSGQ-- 343
           T      + L     ++ ++      A      S           D    + +  + +  
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 96

Query: 344 ---EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWD-------IQYQFGTRNAYAE 393
              E+           S     +    I G++                Q           
Sbjct: 97  KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 156

Query: 394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT---MCCFYTLKN 450
            TY    +   I+  H                   ++  T K+  V          T   
Sbjct: 157 QTYHPEPRVAAIIASHEHPEFIV------------NVKETGKVLLVNYKDIDNLTVTSIG 204

Query: 451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSG 510
               + D  +D S     TA+++             L                       
Sbjct: 205 AAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264

Query: 511 SKLATASSDQTAKLWTVGG--------AVELLQTFYGHSNEVSKVSFHPTGKLVL----- 557
             + + S      +  +G         A + +    G       +  HP    +      
Sbjct: 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTF 324

Query: 558 --SGSQDTTCRLWSTESGECIQVLKAHEDD---------VFSCGFNYNGDTII-----TA 601
                   +  ++  ++ +    +    +          V    +N  GD +        
Sbjct: 325 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 384

Query: 602 SKDNTCCIW 610
           +  +   + 
Sbjct: 385 NDSSALVVV 393

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 21/210 (10%), Positives = 50/210 (23%), Gaps = 15/210 (7%)

Query: 419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANL 478
           +  N    +    G   L D  +      +      V       SG  L     D   ++
Sbjct: 29  DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDM 87

Query: 479 W-TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTF 537
                     +          S        Y        +          G  +E  Q  
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 538 YGHSNEVSKVSFHPTGKL-VLSGSQDTTCRLWSTESGECIQVLK------------AHED 584
                 V   ++HP  ++  +  S +    + + +    + ++                 
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207

Query: 585 DVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
            +   G++ +    +TA+ ++         
Sbjct: 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSK 237

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 13/120 (10%), Positives = 26/120 (21%), Gaps = 9/120 (7%)

Query: 503 DIAFDYSGSKLA--TASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS 560
               D     L   T        L       ++++        V       +G+ +L   
Sbjct: 23  KQLNDLDLPNLFSVTLRDAGQIALVDGDSK-KIVKVIDTG-YAVHISRMSASGRYLLVIG 80

Query: 561 QDTTCRLWSTESGEC-----IQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNR 615
           +D    +    + E      I++         S    Y     I  +             
Sbjct: 81  RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET 140

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 57.2 bits (136), Expect = 2e-09
 Identities = 24/281 (8%), Positives = 76/281 (27%), Gaps = 27/281 (9%)

Query: 325 FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQ- 382
           + + S      + +  S +   T+   + P+     S D   + +  +  + + + D   
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 383 --------------YQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS 428
                             + +         +   + ++   S  ++  +    + +  + 
Sbjct: 64  NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123

Query: 429 SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELL 488
           S DG               +      V++        K    + D T        ++ + 
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183

Query: 489 QTFYGHSNEVSKVLDIAF--------DYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH 540
                 ++ +  V   A         + + + +               G  ++       
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243

Query: 541 SNEVSKVSFHPTGK-LVLSGSQDTTCRLWSTESGECIQVLK 580
            +  + ++  P GK + ++ S   T  +  T +      + 
Sbjct: 244 PD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 49.5 bits (116), Expect = 5e-07
 Identities = 33/282 (11%), Positives = 70/282 (24%), Gaps = 23/282 (8%)

Query: 204 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYG---CLTGSYDRTCKLWDIKSG 260
             S      + D+ S     T     N       S P G    +  ++     + D  + 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVIS-PDGTKVYVANAHSNDVSIIDTATN 64

Query: 261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEE--CIQTYRGHSAEVTF 318
           + I T     +        +     +   +      +  ++      ++T +        
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 319 SPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVV 378
              +  + + + D T  + NT +   ++T+     P           + +      SI V
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWD 438
            D                         +      I+         +        T  + D
Sbjct: 185 IDTVTNS--------------VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230

Query: 439 VRTMCCFYTLKNHEDEVLDIAFDYSGSKL-ATASSDQTANLW 479
             T      +    D    IA    G K+    S   T ++ 
Sbjct: 231 TGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVI 271

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 15/153 (9%), Positives = 43/153 (28%), Gaps = 5/153 (3%)

Query: 207 YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTY 266
            D+T  + +  +   I T    ++        +       ++D           + +   
Sbjct: 136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDT 195

Query: 267 RGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTYRGHSA--EVTFSPDQ 322
              +     +A +       +T       T+ +  +   +             +  +PD 
Sbjct: 196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG 255

Query: 323 ST-FCSCSMDHTARIFNTNSGQEMHTLKAHTGP 354
              + + S  +T  + +T +     T+     P
Sbjct: 256 KKVYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 34/272 (12%), Positives = 59/272 (21%), Gaps = 62/272 (22%)

Query: 311 GHSAEVTFSPDQST-FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLIT 369
           G+               +C     A         +   +       I        N    
Sbjct: 176 GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERI-AAAVKAGNFKTI 234

Query: 370 GSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS 429
           G      VV                  R   +    +                  IA+  
Sbjct: 235 GD-SKVPVVDG----------------RGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK 277

Query: 430 LDGTAKLWDVRTM-CCFYTLKNHEDEV----------LDIAFDYSGSKLATASSDQTANL 478
           L  T  +  +  +   F       D +          L   FD  G+   T   D     
Sbjct: 278 LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCK 337

Query: 479 WTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY 538
           W +  A++       + + V+ +          KL                     Q   
Sbjct: 338 WNIADAIKH-----YNGDRVNYIRQ--------KLDV-------------------QYQP 365

Query: 539 GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST 570
           GH++     S    GK ++  S+ +  R    
Sbjct: 366 GHNHASLTESRDADGKWLVVLSKFSKDRFLPV 397

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 7/106 (6%)

Query: 515 TASSDQTAKLWTV--GGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGSQDTTCRLWSTE 571
            +   Q   +W +   GA+ L Q       +V  +   P  + L +    +     +   
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 572 SGECIQVLKAHE---DDVFSCGFNYNGDTIITASKDNTCCIWRSMN 614
             +      A       +     ++ G  +   S +        + 
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	616
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.91
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.9
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.9
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.81
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.69
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.58
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.46
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.14
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.12
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.12
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.12
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.1
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.09
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.08
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.01
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.99
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.87
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.85
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.6
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.52
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.3
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.16
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.13
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.11
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.04
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.0
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.0
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.96
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.94
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.79
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.77
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.77
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.58
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.55
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.47
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.44
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.38
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.36
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.09
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.8
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.57
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.37
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	95.13
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.26
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.14
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.64
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.81
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.95
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.49
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	86.88
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.3
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	85.34
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	83.54

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-41  Score=330.66  Aligned_cols=291  Identities=30%  Similarity=0.507  Sum_probs=272.3

Q ss_pred             hhhhhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCc
Q psy3640         173 FAQRYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRT  251 (616)
Q Consensus       173 ~~~~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~  251 (616)
                      |.++......|+||.++|++++|+|++++||||+.||+|+|||+.+++.+.++.+|...|.+++|+|++.++ ++..++.
T Consensus         3 w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~   82 (317)
T d1vyhc1           3 WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMT   82 (317)
T ss_dssp             CCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccc
Confidence            334455667899999999999999999999999999999999999999999999999999999999999966 8889999


Q ss_pred             EEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCEEEEE
Q psy3640         252 CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQSTFCSC  328 (616)
Q Consensus       252 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~l~~~  328 (616)
                      +.+|+....+....+.+|...+.++.|+ ++++.+++++.|+.+++||+.+++....+.++..   .++++|++.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  161 (317)
T d1vyhc1          83 IKLWDFQGFECIRTMHGHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC  161 (317)
T ss_dssp             CCEEETTSSCEEECCCCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccceeeecc-CCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence            9999999999999999999999999999 8899999999999999999999999998887654   45899999999999


Q ss_pred             eCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCC--------------------CCEEEEEECCCcEEEEecccccCCc
Q psy3640         329 SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSD--------------------RNMLITGSFDSSIVVWDIQYQFGTR  388 (616)
Q Consensus       329 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~--------------------~~~l~~g~~dg~i~iwd~~~~~~~~  388 (616)
                      +.|+.+++|+..+++....+..|...+.+++|+|+                    +..+++++.|+.|++||++      
T Consensus       162 ~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~------  235 (317)
T d1vyhc1         162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS------  235 (317)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT------
T ss_pred             eCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECC------
Confidence            99999999999999999999999999999999874                    3578999999999999998      


Q ss_pred             ccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEE
Q psy3640         389 NAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLA  468 (616)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~  468 (616)
                                ...++..+.+|...|.+++++|++++|++|+.||.|++||+++++++..+.+|.++|++++|+|++++|+
T Consensus       236 ----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~  305 (317)
T d1vyhc1         236 ----------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV  305 (317)
T ss_dssp             ----------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE
T ss_pred             ----------CCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence                      7788889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCcEEEEe
Q psy3640         469 TASSDQTANLWT  480 (616)
Q Consensus       469 ~~~~dg~i~iwd  480 (616)
                      +++.||+|++||
T Consensus       306 s~s~Dg~i~iWd  317 (317)
T d1vyhc1         306 TGSVDQTVKVWE  317 (317)
T ss_dssp             EEETTSEEEEEC
T ss_pred             EEeCCCeEEEeC
Confidence            999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-41  Score=331.27  Aligned_cols=307  Identities=28%  Similarity=0.456  Sum_probs=276.1

Q ss_pred             ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEEEeCCCcEEEE
Q psy3640         261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCSCSMDHTARIF  337 (616)
Q Consensus       261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~~~~dg~i~i~  337 (616)
                      ....++++|.++|++++|+ |++++|++|+.||+|++||+.+++.+.++.+|...   ++++|++..++++..++.+..|
T Consensus         8 ~~~~~L~GH~~~I~~l~~s-p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFH-PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             SCSCEEECCSSCEEEEEEC-SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             CccEEEcCCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            3446899999999999999 78999999999999999999999999999887665   4899999999999999999999


Q ss_pred             ECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEE
Q psy3640         338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCL  417 (616)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  417 (616)
                      +....+....+..|...+.++.++|+++.+++++.|+.+++||++                .......+..|...+.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~  150 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ----------------TGYCVKTFTGHREWVRMVR  150 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT----------------TCCEEEEEECCSSCEEEEE
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecc----------------cceeeeEEccCCCcceeee
Confidence            999999998899999999999999999999999999999999998                7778888899999999999


Q ss_pred             EccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCC
Q psy3640         418 FNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNE  497 (616)
Q Consensus       418 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  497 (616)
                      +++++.++++++.|+.+++|+..++.....+..+...+.+++++|++.........+..                     
T Consensus       151 ~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------------  209 (317)
T d1vyhc1         151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE---------------------  209 (317)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---------------------
T ss_pred             cccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce---------------------
Confidence            99999999999999999999999999999999999999999999976544332222211                     


Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeee
Q psy3640         498 VSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ  577 (616)
Q Consensus       498 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~  577 (616)
                           .......+.++++++.|+.|++|++.++ ..+..+.+|...|++++|+|++++|++|+.||.|++||+.+++++.
T Consensus       210 -----~~~~~~~~~~~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  283 (317)
T d1vyhc1         210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK  283 (317)
T ss_dssp             ------------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred             -----eeeeccCCceeEeccCCCEEEEEECCCC-cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence                 1233456788999999999999999885 6778889999999999999999999999999999999999999999


Q ss_pred             EeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         578 VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       578 ~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      .+.+|.++|++++|+|++++|+||+.||+|+|||
T Consensus       284 ~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-40  Score=325.43  Aligned_cols=284  Identities=18%  Similarity=0.305  Sum_probs=251.3

Q ss_pred             hhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcE-----EEEEeccCCcEEEEEEcCCCCEE-EEECC
Q psy3640         176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHE-----ICTYRGHQNVVYAVAFSEPYGCL-TGSYD  249 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~-----~~~~~~h~~~I~~l~fs~~~~ll-s~s~d  249 (616)
                      +.+.++.+ +|..+|++++|+|+|++||+|+ ||.|+|||+.++..     .....+|.+.|.+++|+|++.++ +++.|
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            33445555 7999999999999999999997 89999999976532     22345899999999999999955 89999


Q ss_pred             CcEEEEeCCCC--ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeecee---eEEEcCCCCE
Q psy3640         250 RTCKLWDIKSG--HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSA---EVTFSPDQST  324 (616)
Q Consensus       250 ~~I~iwd~~~~--~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~  324 (616)
                      ++|++||+...  +....+..|...+..++|+ +++..+++++.|+.+++|++.++++.....++..   .++|++++..
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTSSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998754  4567788999999999999 8899999999999999999999998888776654   4589999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceE
Q psy3640         325 FCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH  404 (616)
Q Consensus       325 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  404 (616)
                      +++++.|+.+++||+++++.+..+. |...|.+++|+|+++++++|+.|+.+++||++                .. ...
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~----------------~~-~~~  259 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN----------------KP-DKY  259 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------SS-CEE
T ss_pred             cccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccc----------------cc-ccc
Confidence            9999999999999999999887775 88999999999999999999999999999996                22 334


Q ss_pred             EEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         405 ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV  481 (616)
Q Consensus       405 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  481 (616)
                      ....|...|.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++++|++++.||.|++||+
T Consensus       260 ~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            567889999999999999999999999999999999999887765 7889999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-40  Score=324.89  Aligned_cols=287  Identities=22%  Similarity=0.338  Sum_probs=246.9

Q ss_pred             EEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCce-----EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeE
Q psy3640         221 EICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHE-----ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTL  295 (616)
Q Consensus       221 ~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i  295 (616)
                      .+..+ .|...|.+++|+|++++++++.||.|+|||+.++..     .....+|.+.|.+++|+ |++++|++++.||.|
T Consensus        44 ~~~~~-~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s-~dg~~l~s~~~dg~i  121 (337)
T d1gxra_          44 QINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTL  121 (337)
T ss_dssp             EEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEE
T ss_pred             EEEEC-CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-CCCCEEEEeeccccc
Confidence            34444 799999999999999988556699999999976542     23345789999999999 788899999988888


Q ss_pred             EEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy3640         296 KLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS  375 (616)
Q Consensus       296 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~  375 (616)
                      ++||+....                                     ++....+..|...+.+++|+|++.++++++.|+.
T Consensus       122 ~iwd~~~~~-------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~  164 (337)
T d1gxra_         122 SIWDLAAPT-------------------------------------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGN  164 (337)
T ss_dssp             EEEECCCC---------------------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             ccccccccc-------------------------------------cccccccccccccccccccccccccccccccccc
Confidence            888865322                                     2334556678899999999999999999999999


Q ss_pred             EEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCE
Q psy3640         376 IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEV  455 (616)
Q Consensus       376 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  455 (616)
                      |++|++.                ..........|...+.+++|++++..+++++.|+.+++||+++++.+..+. +...|
T Consensus       165 i~~~~~~----------------~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i  227 (337)
T d1gxra_         165 IAVWDLH----------------NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQI  227 (337)
T ss_dssp             EEEEETT----------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred             ccccccc----------------cccccccccccccccccccccccccccccccccccccccccccceeecccc-cccce
Confidence            9999997                667778888899999999999999999999999999999999998887765 77889


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640         456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ  535 (616)
Q Consensus       456 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  535 (616)
                      .+++|+|+++++++++.|+.+++||+....                                               . .
T Consensus       228 ~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-----------------------------------------------~-~  259 (337)
T d1gxra_         228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPD-----------------------------------------------K-Y  259 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSSC-----------------------------------------------E-E
T ss_pred             EEEEEcccccccceeccccccccccccccc-----------------------------------------------c-c
Confidence            999999999999999999999999886531                                               1 1


Q ss_pred             EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640         536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS  612 (616)
Q Consensus       536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~  612 (616)
                      ....|...|++++|+|++++|++++.||.|++||+.+++.+..+. |.++|.+++|+|++++|+||+.||+|+|||+
T Consensus       260 ~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            234688999999999999999999999999999999999988765 7789999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-40  Score=331.34  Aligned_cols=318  Identities=24%  Similarity=0.372  Sum_probs=263.5

Q ss_pred             EEEEECCCcEEEEeCCCCceE----EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec------
Q psy3640         243 CLTGSYDRTCKLWDIKSGHEI----CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH------  312 (616)
Q Consensus       243 lls~s~d~~I~iwd~~~~~~~----~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------  312 (616)
                      .+....++...+|+....+..    ....+|.+.|++++|+ +++++|++|+ |++|++||+.+++.+..+..+      
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs-~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEEC-TTSSEEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEEC-CCCCEEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence            457888899999998765432    2333699999999999 8899999986 899999999999887776432      


Q ss_pred             ---------------eeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy3640         313 ---------------SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIV  377 (616)
Q Consensus       313 ---------------~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~  377 (616)
                                     ...++|+|++++|++|+.||.|++||...++.+....+|...|.++++++++..+++++.++.++
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             ----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence                           34568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee-------c
Q psy3640         378 VWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK-------N  450 (616)
Q Consensus       378 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~  450 (616)
                      +||.+                ..........+...+....+.+++.++++++.||.|++||.+++.....+.       +
T Consensus       189 ~~d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~  252 (388)
T d1erja_         189 IWDLR----------------TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG  252 (388)
T ss_dssp             EEETT----------------TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC
T ss_pred             eeecc----------------ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccC
Confidence            99987                555555555555555555555688999999999999999999987776653       4


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA  530 (616)
Q Consensus       451 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  530 (616)
                      |...|.+++|+|++++|++++.||.+++||+............                                   ..
T Consensus       253 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------------------------~~  297 (388)
T d1erja_         253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP-----------------------------------NS  297 (388)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------------------------------------------
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc-----------------------------------cc
Confidence            7789999999999999999999999999999764322111000                                   00


Q ss_pred             eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEE------eeCCCEEEEeeCC
Q psy3640         531 VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGF------NYNGDTIITASKD  604 (616)
Q Consensus       531 ~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~------s~~~~~l~t~s~D  604 (616)
                      .........|...|++++|+|++++|++|+.||.|++||+++++++.++++|.+.|.++++      +|++++||||+.|
T Consensus       298 ~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~D  377 (388)
T d1erja_         298 GTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD  377 (388)
T ss_dssp             -CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred             cceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCC
Confidence            2334456679999999999999999999999999999999999999999999999999975      5688999999999


Q ss_pred             CcEEEcccC
Q psy3640         605 NTCCIWRSM  613 (616)
Q Consensus       605 g~i~vW~~~  613 (616)
                      |+|+||+++
T Consensus       378 g~I~iW~~~  386 (388)
T d1erja_         378 CKARIWKYK  386 (388)
T ss_dssp             SEEEEEEEE
T ss_pred             CEEEEEeee
Confidence            999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-39  Score=321.82  Aligned_cols=287  Identities=20%  Similarity=0.350  Sum_probs=255.6

Q ss_pred             hhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEE
Q psy3640         176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKL  254 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~i  254 (616)
                      ..+..++|+||.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|..+|.+++|+|++.++ +++.|+.+++
T Consensus        44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~  123 (340)
T d1tbga_          44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence            345567899999999999999999999999999999999999999999999999999999999999955 8999999999


Q ss_pred             EeCCCC----ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee---EEEcCCCCEEEE
Q psy3640         255 WDIKSG----HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE---VTFSPDQSTFCS  327 (616)
Q Consensus       255 wd~~~~----~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~l~~  327 (616)
                      |+....    .....+.+|..........  .+..+.....+.....|.............+...   ..+.+....+++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         124 YNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EESSSSCSCCCEEEEECCCSSCEEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccceecccccccccccccc--cccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            997654    3556777888877776664  4678888999999999998887766665554433   468889999999


Q ss_pred             EeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEE-
Q psy3640         328 CSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-  406 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-  406 (616)
                      ++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|++||++                ........ 
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~----------------~~~~~~~~~  265 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR----------------ADQELMTYS  265 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEEEEC
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeec----------------ccccccccc
Confidence            9999999999999999999999999999999999999999999999999999997                44444333 


Q ss_pred             -ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640         407 -TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT  480 (616)
Q Consensus       407 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  480 (616)
                       ..+...+.+++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|++|+.||.|++||
T Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence             45667799999999999999999999999999999999999999999999999999999999999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-39  Score=322.70  Aligned_cols=342  Identities=23%  Similarity=0.413  Sum_probs=267.5

Q ss_pred             heecccCCcce-EEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCC
Q psy3640         180 FKMLKSHLLPL-TNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIK  258 (616)
Q Consensus       180 ~~~l~~h~~~i-~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~  258 (616)
                      ..+|+||...| +|++|  +|++||||+.||+|+|||+.+++.+.++.+|.++|++++|+|++.+++++.|++|++|++.
T Consensus         5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEeccccccccccc
Confidence            46799999885 66665  6799999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCceEEEeeCCCC--cEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEE
Q psy3640         259 SGHEICTYRGHQN--VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARI  336 (616)
Q Consensus       259 ~~~~~~~~~~h~~--~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i  336 (616)
                      ..+.......+..  ......+. +++..+++++.|+.|++||+.+..............                 ...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-----------------~~~  144 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-----------------LVF  144 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCC-----------------EEE
T ss_pred             ccccccccccccccccccccccc-cccceeeeecCCCcEEEEEccCCceeccccccceec-----------------cce
Confidence            9988776654443  34445555 788899999999999999998876554332211100                 000


Q ss_pred             EE-CCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640         337 FN-TNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN  415 (616)
Q Consensus       337 ~d-~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  415 (616)
                      +. ............|...+...  .++++.++++..|+.+++||++                ....+....++...+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~d~~i~~~d~~----------------~~~~~~~~~~~~~~~~~  206 (355)
T d1nexb2         145 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVA----------------QMKCLYILSGHTDRIYS  206 (355)
T ss_dssp             SCTTTCTTEEEEEECCSSCEEEE--EEETTEEEEEETTSCEEEEETT----------------TTEEEEEECCCSSCEEE
T ss_pred             eccccccceeeeeeecccccccc--ccccceeeeecccceeeeeecc----------------cccceeeeecccccccc
Confidence            00 11122334444566666554  4567899999999999999998                67777888889999999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccC
Q psy3640         416 CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHS  495 (616)
Q Consensus       416 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  495 (616)
                      +.+++++..+++++.|+.|++||.+++..+..+.+|...|.++++++  ++|++++.||.|++||+.+...         
T Consensus       207 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~---------  275 (355)
T d1nexb2         207 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR---------  275 (355)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCE---------
T ss_pred             ccccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccccccccccccce---------
Confidence            99999999999999999999999999999999999999999999874  6899999999999999865311         


Q ss_pred             CCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEE-EEecCCCEEEEEECCCcEEEecCCcCe
Q psy3640         496 NEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKV-SFHPTGKLVLSGSQDTTCRLWSTESGE  574 (616)
Q Consensus       496 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s~s~dg~i~iwd~~~~~  574 (616)
                                                              .+..|...+.++ .+++++++|++| .||.|++||+++|+
T Consensus       276 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~  314 (355)
T d1nexb2         276 ----------------------------------------KFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGK  314 (355)
T ss_dssp             ----------------------------------------EEEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCC
T ss_pred             ----------------------------------------ecccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCC
Confidence                                                    122344445444 467777777666 48999999999999


Q ss_pred             eee-EeccCcccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640         575 CIQ-VLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRS  612 (616)
Q Consensus       575 ~~~-~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~  612 (616)
                      ++. .+.+|.++|++++|+|+ .++++++.||+++||.+
T Consensus       315 ~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         315 LVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             BCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             EEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            885 57889999999999986 57888999999877654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-39  Score=326.24  Aligned_cols=293  Identities=23%  Similarity=0.419  Sum_probs=250.9

Q ss_pred             ccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe------------------ccCCcEEEEEEcCCCCEE-
Q psy3640         184 KSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR------------------GHQNVVYAVAFSEPYGCL-  244 (616)
Q Consensus       184 ~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~------------------~h~~~I~~l~fs~~~~ll-  244 (616)
                      .+|.++|+|++|||||++||+|+ |++|+|||+.+++.+..+.                  .|...|++++|+|+++++ 
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            47999999999999999999987 8999999999998877664                  466779999999999855 


Q ss_pred             EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE--EE-cCC
Q psy3640         245 TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV--TF-SPD  321 (616)
Q Consensus       245 s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v--~~-~~~  321 (616)
                      +++.||.|++||..+++.+..+.+|...|.+++++ +++..+++++.++.+++||..+.........+....  .+ .++
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  216 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  216 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             ecccccccccccccccccccccccccccccccccc-cccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence            89999999999999999999999999999999999 789999999999999999999988877766555443  44 458


Q ss_pred             CCEEEEEeCCCcEEEEECCCCceeEEe-------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640         322 QSTFCSCSMDHTARIFNTNSGQEMHTL-------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       322 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                      +.++++++.||.|++||..++.....+       .+|...|.+++|+|++++|++++.||.|++||++........    
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----  292 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS----  292 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc----
Confidence            899999999999999999998876655       357889999999999999999999999999998744322111    


Q ss_pred             ccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEE------cCCCCEEE
Q psy3640         395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAF------DYSGSKLA  468 (616)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~------~~~~~~l~  468 (616)
                      ..............|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|.+.|.++++      +|++.+|+
T Consensus       293 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~  372 (388)
T d1erja_         293 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA  372 (388)
T ss_dssp             ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred             ccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEE
Confidence            111134456667789999999999999999999999999999999999999999999999999975      56889999


Q ss_pred             EEeCCCcEEEEecC
Q psy3640         469 TASSDQTANLWTVG  482 (616)
Q Consensus       469 ~~~~dg~i~iwd~~  482 (616)
                      +++.||+|++|+++
T Consensus       373 s~s~Dg~I~iW~~~  386 (388)
T d1erja_         373 TGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCEEEEEeee
Confidence            99999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2e-38  Score=310.14  Aligned_cols=293  Identities=16%  Similarity=0.205  Sum_probs=244.7

Q ss_pred             ccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee
Q psy3640         227 GHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI  306 (616)
Q Consensus       227 ~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  306 (616)
                      .+++.+..++++|++..++.+.++.|.+||+.+++....+.+|.+.|++++|+ |++++|++|+.||+|++||+.+++..
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~s-p~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEe-CCCCeEeccccCceEeeeeeeccccc
Confidence            34556778899999998866778899999999999999999999999999999 78999999999888888887654421


Q ss_pred             EEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC--CcEEEEecccc
Q psy3640         307 QTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD--SSIVVWDIQYQ  384 (616)
Q Consensus       307 ~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d--g~i~iwd~~~~  384 (616)
                                                           ....+..|..+|.+++|+|+++++++++.+  ..+++|++.  
T Consensus        94 -------------------------------------~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~--  134 (311)
T d1nr0a1          94 -------------------------------------LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--  134 (311)
T ss_dssp             -------------------------------------EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--
T ss_pred             -------------------------------------cccccccccCccccccccccccccccccccccccccccccc--
Confidence                                                 123456788999999999999999999864  569999997  


Q ss_pred             cCCcccccccccccCCcceEEEecCccceeEEEEccCCCE-EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640         385 FGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM-IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS  463 (616)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  463 (616)
                                    .......+.+|...|.+++|+|++++ +++|+.|+.|++||+++++....+..|..+|.+++|+|+
T Consensus       135 --------------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~  200 (311)
T d1nr0a1         135 --------------TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD  200 (311)
T ss_dssp             --------------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTT
T ss_pred             --------------cccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcc
Confidence                          55666677889999999999999884 888999999999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccC
Q psy3640         464 GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNE  543 (616)
Q Consensus       464 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~  543 (616)
                      ++++++++.|+.+++||........ .+...                                       .....+|.+.
T Consensus       201 ~~~l~~~~~d~~v~~~d~~~~~~~~-~~~~~---------------------------------------~~~~~~h~~~  240 (311)
T d1nr0a1         201 GSLFASTGGDGTIVLYNGVDGTKTG-VFEDD---------------------------------------SLKNVAHSGS  240 (311)
T ss_dssp             SSEEEEEETTSCEEEEETTTCCEEE-ECBCT---------------------------------------TSSSCSSSSC
T ss_pred             ccccccccccccccccccccccccc-ccccc---------------------------------------cccccccccc
Confidence            9999999999999999987653221 11000                                       0123468999


Q ss_pred             EEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcc-cEEEEEEeeCCCEEEEeeCCCcEEEcccC
Q psy3640         544 VSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHED-DVFSCGFNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       544 v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~-~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      |++++|+|++++|++|+.||.|+|||+++++++.++..|.. ....+.+.++++.|++++.||.|++||.+
T Consensus       241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999999999999999999999987653 22234455567789999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-37  Score=305.57  Aligned_cols=294  Identities=27%  Similarity=0.452  Sum_probs=252.5

Q ss_pred             cEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEE
Q psy3640         220 HEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW  298 (616)
Q Consensus       220 ~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iw  298 (616)
                      +..++|+||.++|++++|+|++.++ +|+.||+|+|||+.+++.+..+..|...|.+++|+ |++.++++++.|+.+++|
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~-~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEEC-TTSSEEEEEETTCCEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEee-ccceeeeeecccceeecc
Confidence            4567899999999999999999955 99999999999999999999999999999999999 889999999999999999


Q ss_pred             eCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy3640         299 ASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVV  378 (616)
Q Consensus       299 d~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~i  378 (616)
                      +.......                                   ......+.+|.......... .+..+.....+.....
T Consensus       125 ~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  168 (340)
T d1tbga_         125 NLKTREGN-----------------------------------VRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCAL  168 (340)
T ss_dssp             ESSSSCSC-----------------------------------CCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEE
T ss_pred             cccccccc-----------------------------------cccceecccccccccccccc-cccccccccccccccc
Confidence            87654321                                   12223344555555554444 3457778888999998


Q ss_pred             EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEE
Q psy3640         379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDI  458 (616)
Q Consensus       379 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l  458 (616)
                      +...                ..........+...+....+.+.+.++++++.|+.+++||+++++++..+.+|...|+++
T Consensus       169 ~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v  232 (340)
T d1tbga_         169 WDIE----------------TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI  232 (340)
T ss_dssp             EETT----------------TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             cccc----------------cccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEE
Confidence            8876                556666777788889999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEee
Q psy3640         459 AFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFY  538 (616)
Q Consensus       459 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  538 (616)
                      +|+|++++|++++.||.+++|++......                                             ......
T Consensus       233 ~~~p~~~~l~s~s~d~~i~~~~~~~~~~~---------------------------------------------~~~~~~  267 (340)
T d1tbga_         233 CFFPNGNAFATGSDDATCRLFDLRADQEL---------------------------------------------MTYSHD  267 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEE---------------------------------------------EEECCT
T ss_pred             EECCCCCEEEEEeCCCeEEEEeecccccc---------------------------------------------cccccc
Confidence            99999999999999999999998764211                                             111123


Q ss_pred             ccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         539 GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       539 ~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      .|...|++++|+|++++|++|+.||.|++||+.+++++..+.+|.++|++++|+|++++|+||+.||+|+|||
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            4667899999999999999999999999999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.2e-38  Score=306.63  Aligned_cols=285  Identities=18%  Similarity=0.163  Sum_probs=242.2

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceE
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEI  263 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~  263 (616)
                      .+.+.+..++++|+|+.||.++ ++.|.+||+.+++....+.+|...|++++|+|+++++ +|+.||+|++||+.+++..
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            4556778899999999999986 5579999999999999999999999999999999966 8999999999999988644


Q ss_pred             --EEeeCCCCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEEeeeceee---EEEcCCCCE-EEEEeCCCcEE
Q psy3640         264 --CTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTYRGHSAE---VTFSPDQST-FCSCSMDHTAR  335 (616)
Q Consensus       264 --~~~~~h~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~-l~~~~~dg~i~  335 (616)
                        ..+..|.++|.+++|+ ++++++++++.  +..+++|++++++....+.+|...   ++|+|++++ +++|+.||.|+
T Consensus        94 ~~~~~~~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             EEEEEECSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             cccccccccCcccccccc-ccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccc
Confidence              5678899999999999 88999999986  456999999999988888776654   579999885 78899999999


Q ss_pred             EEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeE
Q psy3640         336 IFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISN  415 (616)
Q Consensus       336 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  415 (616)
                      +||+++++....+..|..+|.++.|+|+++++++++.|+.|++||.........         -........+|...|.+
T Consensus       173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~---------~~~~~~~~~~h~~~V~~  243 (311)
T d1nr0a1         173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV---------FEDDSLKNVAHSGSVFG  243 (311)
T ss_dssp             EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE---------CBCTTSSSCSSSSCEEE
T ss_pred             cccccccccccccccccccccccccCcccccccccccccccccccccccccccc---------ccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999873211100         00111123468889999


Q ss_pred             EEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCC---CEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         416 CLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHED---EVLDIAFDYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       416 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      ++|+|++++|++|+.||.|++||+++++++.++..+..   .+.++.|  ++..+++++.||.|++||.+
T Consensus       244 ~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             cccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence            99999999999999999999999999999998876643   4445555  46689999999999999973

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-37  Score=302.04  Aligned_cols=327  Identities=29%  Similarity=0.485  Sum_probs=269.1

Q ss_pred             hhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEE
Q psy3640         176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLW  255 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iw  255 (616)
                      .++..++|+||.++|.+ +++++|++||||+.||+|+|||+.++++++++.+|...|.+++|+++ .+++++.|+.+++|
T Consensus         5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-~l~s~s~D~~~~~~   82 (342)
T d2ovrb2           5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVW   82 (342)
T ss_dssp             CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEE
T ss_pred             CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-ccccceeccccccc
Confidence            34567889999999865 46678999999999999999999999999999999999999999975 57799999999999


Q ss_pred             eCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcE
Q psy3640         256 DIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       256 d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i  334 (616)
                      +............+...+......   ...++.+..|+.+.+|+..+++....+....... ...+....++.++.++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             ccccccceecccccceeEeeeecc---cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            999998888888788888877766   5788999999999999999998877765544433 566677889999999999


Q ss_pred             EEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         335 RIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       335 ~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                      ++||....+.+..+.+|...+..+.+  ++..+++++.||.|++||++                ....+.....|...+.
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~----------------~~~~~~~~~~~~~~v~  221 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE----------------TGNCIHTLTGHQSLTS  221 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT----------------TCCEEEEECCCCSCEE
T ss_pred             EEeecccceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecc----------------cceeeeEeccccccee
Confidence            99999999999999999888777665  67899999999999999998                7778888899999988


Q ss_pred             EEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEE
Q psy3640         415 NCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN---HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTF  491 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  491 (616)
                      ++.++  ++++++++.||.|++||+...+....+..   |...+.++.++  ++++++++.||.|++||+.++..... +
T Consensus       222 ~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~-~  296 (342)
T d2ovrb2         222 GMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRN-L  296 (342)
T ss_dssp             EEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE-E
T ss_pred             EEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEE-E
Confidence            87765  56999999999999999999888777764   44566666665  46889999999999999876522111 1


Q ss_pred             eccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCc----EEE
Q psy3640         492 YGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT----CRL  567 (616)
Q Consensus       492 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~----i~i  567 (616)
                      ..                                         ....+|...|++++|+|++.+|++|+.||+    |++
T Consensus       297 ~~-----------------------------------------~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~  335 (342)
T d2ovrb2         297 VT-----------------------------------------LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV  335 (342)
T ss_dssp             EE-----------------------------------------CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred             ec-----------------------------------------ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEE
Confidence            00                                         001246677888888888888888877775    778


Q ss_pred             ecCC
Q psy3640         568 WSTE  571 (616)
Q Consensus       568 wd~~  571 (616)
                      ||++
T Consensus       336 ~Df~  339 (342)
T d2ovrb2         336 LDFD  339 (342)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            8764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=300.88  Aligned_cols=329  Identities=26%  Similarity=0.458  Sum_probs=268.8

Q ss_pred             EECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECC
Q psy3640         214 WDIKSGHEICTYRGHQNVVYAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFD  292 (616)
Q Consensus       214 wd~~~~~~~~~~~~h~~~I~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~d  292 (616)
                      |+..+.+..+.++||.+.|.+ +++++++ +++|+.||+|+|||+.+++++.++.+|.+.|.+++|+ +  +++++++.|
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~-~--~~l~s~s~D   76 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-D--NIIISGSTD   76 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE-T--TEEEEEETT
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC-C--Cccccceec
Confidence            555666778899999999864 3555666 5599999999999999999999999999999999998 3  599999999


Q ss_pred             CeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE
Q psy3640         293 KTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS  371 (616)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~  371 (616)
                      +.+++|+................+ ........+..+..|+.+.+|+..+++....+..+......  ..+....+++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  154 (342)
T d2ovrb2          77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC--VQYDGRRVVSGA  154 (342)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEE--EEECSSCEEEEE
T ss_pred             ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeeccccccee--eccccceeeeec
Confidence            999999999887777666555554 34556678889999999999999999888877755554443  334567899999


Q ss_pred             CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecC
Q psy3640         372 FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNH  451 (616)
Q Consensus       372 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  451 (616)
                      .|+.+++||..                ....+..+.+|...+..  +.+++..+++++.||.|++||++.++.+..+..|
T Consensus       155 ~d~~i~~~d~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~  216 (342)
T d2ovrb2         155 YDFMVKVWDPE----------------TETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH  216 (342)
T ss_dssp             TTSCEEEEEGG----------------GTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             CCCeEEEeecc----------------cceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEeccc
Confidence            99999999997                66667777777766554  4557889999999999999999999999999999


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640         452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAV  531 (616)
Q Consensus       452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~  531 (616)
                      ...+.++++++  ++|++++.|+.|++||.......                                            
T Consensus       217 ~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~--------------------------------------------  250 (342)
T d2ovrb2         217 QSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCL--------------------------------------------  250 (342)
T ss_dssp             CSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEE--------------------------------------------
T ss_pred             ccceeEEecCC--CEEEEEcCCCEEEEEeccccccc--------------------------------------------
Confidence            99998888764  58999999999999998663211                                            


Q ss_pred             EEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEec-----cCcccEEEEEEeeCCCEEEEeeCCCc
Q psy3640         532 ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLK-----AHEDDVFSCGFNYNGDTIITASKDNT  606 (616)
Q Consensus       532 ~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~h~~~V~~l~~s~~~~~l~t~s~Dg~  606 (616)
                      ........|...+.++.++  ++++++|+.||.|++||+++++++..+.     +|.+.|++++|+|++.+|++|+.||+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt  328 (342)
T d2ovrb2         251 QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT  328 (342)
T ss_dssp             EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred             ccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence            1111123356667777665  5699999999999999999999988774     57788999999999999999999996


Q ss_pred             ----EEEcccCC
Q psy3640         607 ----CCIWRSMN  614 (616)
Q Consensus       607 ----i~vW~~~~  614 (616)
                          |++||++.
T Consensus       329 ~~~~l~~~Df~~  340 (342)
T d2ovrb2         329 EETKLLVLDFDV  340 (342)
T ss_dssp             SCCEEEEEECCC
T ss_pred             CeeEEEEEeCCC
Confidence                99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-37  Score=301.36  Aligned_cols=287  Identities=15%  Similarity=0.222  Sum_probs=234.0

Q ss_pred             hheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEECCCcEEEEeC
Q psy3640         179 KFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGCLTGSYDRTCKLWDI  257 (616)
Q Consensus       179 ~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~-~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~  257 (616)
                      ..+.++||..+|++++|+|+|++||+|+.||+|++||+++++.+..+. +|...|++++|+|++.+++++.|+.+++|+.
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence            468899999999999999999999999999999999999999988874 7999999999999999999999999999998


Q ss_pred             CCCce---EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcE
Q psy3640         258 KSGHE---ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTA  334 (616)
Q Consensus       258 ~~~~~---~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i  334 (616)
                      .....   ......+...+.+++|+ ++++.+++++ ++.+++|+...... .........++++|++.++++++.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSHGKLTE-VPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEETTEEEE-EECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             CCccccccccccccccccccccccc-cccccccccc-cccccccccccccc-cccccccccccccccccccccccccccc
Confidence            65432   22334577889999999 7777666655 57899999543221 1223344567999999999999999999


Q ss_pred             EEEECCCCceeE-EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccce
Q psy3640         335 RIFNTNSGQEMH-TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEI  413 (616)
Q Consensus       335 ~i~d~~~~~~~~-~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  413 (616)
                      ++||+++++... ....|...|.+++|+|+++++++++.|+.|++||+....             .......+..|...|
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------~~~~~~~~~~h~~~v  227 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF-------------ELAHTNSWTFHTAKV  227 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT-------------EESCCCCCCCCSSCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-------------ccccccccccccccc
Confidence            999998877544 345689999999999999999999999999999987321             112233456788999


Q ss_pred             eEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE--EeecC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         414 SNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY--TLKNH-EDEVLDIAFDYSGSKLATASSDQTANLWTVG  482 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~-~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~  482 (616)
                      .+++|+|+++++++|+.||.|++||++++....  ....| ...+.++.+ +++.+|++++.|+.|++||+.
T Consensus       228 ~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         228 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             ccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            999999999999999999999999998764332  22233 355666655 567899999999999999973

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.9e-37  Score=309.42  Aligned_cols=345  Identities=17%  Similarity=0.142  Sum_probs=246.9

Q ss_pred             CCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc--EEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCce
Q psy3640         186 HLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH--EICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHE  262 (616)
Q Consensus       186 h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~--~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~  262 (616)
                      +..||+|++|+|+|++||+|+.||.|+|||.++++  .+..+++|.++|.+++|+|++.++ +++.|++|++||+.++..
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            34789999999999999999999999999998775  567789999999999999999955 899999999999988764


Q ss_pred             --EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECC
Q psy3640         263 --ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTN  340 (616)
Q Consensus       263 --~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~  340 (616)
                        ...+.+|...|.+++|+ |+++.+++++.|+++++|++........                                
T Consensus        86 ~~~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~--------------------------------  132 (371)
T d1k8kc_          86 KPTLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWV--------------------------------  132 (371)
T ss_dssp             EEEEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEE--------------------------------
T ss_pred             ccccccccccccccccccc-cccccceeecccCcceeeeeeccccccc--------------------------------
Confidence              44556889999999999 7889999999998888887654321110                                


Q ss_pred             CCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccc--ccccccCCcceEEEecCccceeEEEE
Q psy3640         341 SGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA--ESTYRASHKPIHILTGHSQEISNCLF  418 (616)
Q Consensus       341 ~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~  418 (616)
                         .......|...|.+++|+|++++|++|+.|+++++|+............  ................|...+.+++|
T Consensus       133 ---~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  209 (371)
T d1k8kc_         133 ---CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF  209 (371)
T ss_dssp             ---EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE
T ss_pred             ---ccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe
Confidence               1223345888999999999999999999999999999864332211111  11111234556677889999999999


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCe
Q psy3640         419 NFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEV  498 (616)
Q Consensus       419 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  498 (616)
                      +|+++.+++++.|+.|++||+.++..+..+..|..+|.+++|+|+++++++| .|+.+++|........... .......
T Consensus       210 s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~-~~~~~~~  287 (371)
T d1k8kc_         210 SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF-GGRLDVP  287 (371)
T ss_dssp             CSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE-CCCCCCC
T ss_pred             ecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEE-eeeecCc
Confidence            9999999999999999999999999999999999999999999999777765 5777777765443222111 1110000


Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCC----CEEEEEECCCcEEEecCCcC
Q psy3640         499 SKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG----KLVLSGSQDTTCRLWSTESG  573 (616)
Q Consensus       499 ~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg----~~l~s~s~dg~i~iwd~~~~  573 (616)
                      ........+....+   ...+.........  .........|.+.|+++++.|.+    ..++|++.||.|++||+++.
T Consensus       288 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~  361 (371)
T d1k8kc_         288 KQSSQRGLTARERF---QNLDKKASSEGSA--AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  361 (371)
T ss_dssp             --------CHHHHH---HHCCCCC-----------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             cccccccccceeeE---ecccceeEEeccc--cccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence            00000000000000   0000001110000  01111223599999999998865    36899999999999998653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-35  Score=288.76  Aligned_cols=291  Identities=19%  Similarity=0.259  Sum_probs=227.0

Q ss_pred             CcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEee-CCCCcEEEEEEeCCCCCEEEEEECCCeEE
Q psy3640         219 GHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGDKILTGSFDKTLK  296 (616)
Q Consensus       219 ~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~~~~~~l~s~s~dg~i~  296 (616)
                      |+..+.+.||..+|++++|+|+++++ +|+.||+|++||+++++.+..+. +|...|++++|+ +++. +++++.|+.++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~-~~g~-~~~~~~d~~v~   79 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-SKGD-LFTVSWDDHLK   79 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC-TTSC-EEEEETTTEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEee-ccce-eecccceeeEE
Confidence            56778999999999999999999955 89999999999999999888874 789999999999 6665 56677889999


Q ss_pred             EEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy3640         297 LWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSI  376 (616)
Q Consensus       297 iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i  376 (616)
                      +|+.......                                    ........+...+.+++|+|++..+++++ ++.+
T Consensus        80 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i  122 (299)
T d1nr0a2          80 VVPAGGSGVD------------------------------------SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHI  122 (299)
T ss_dssp             EECSSSSSSC------------------------------------TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEE
T ss_pred             EeccCCcccc------------------------------------ccccccccccccccccccccccccccccc-cccc
Confidence            9986543210                                    00011123566788899999998777665 6689


Q ss_pred             EEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE-EeecCCCCE
Q psy3640         377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY-TLKNHEDEV  455 (616)
Q Consensus       377 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v  455 (616)
                      ++|+...                  ....  .....+.+++++|+++++++|+.||.+++||+++++... ....|..+|
T Consensus       123 ~~~~~~~------------------~~~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i  182 (299)
T d1nr0a2         123 AIYSHGK------------------LTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI  182 (299)
T ss_dssp             EEEETTE------------------EEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCE
T ss_pred             ccccccc------------------cccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9998531                  1111  233456788999999999999999999999998876544 344688899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640         456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ  535 (616)
Q Consensus       456 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  535 (616)
                      .+++|+|+++++++++.|+.+++|++.+....                                            ....
T Consensus       183 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--------------------------------------------~~~~  218 (299)
T d1nr0a2         183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFEL--------------------------------------------AHTN  218 (299)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEGGGTTEE--------------------------------------------SCCC
T ss_pred             cccccccccccccccccccccccccccccccc--------------------------------------------cccc
Confidence            99999999999999999999999998653211                                            1122


Q ss_pred             EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeee--EeccC-cccEEEEEEeeCCCEEEEeeCCCcEEEccc
Q psy3640         536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQ--VLKAH-EDDVFSCGFNYNGDTIITASKDNTCCIWRS  612 (616)
Q Consensus       536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~--~~~~h-~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~  612 (616)
                      .+.+|..+|++++|+|++++|++|+.||.|++||++++....  ....| ...|.++. ++++++|+|++.||+|++||+
T Consensus       219 ~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         219 SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEEEC
T ss_pred             cccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEEec
Confidence            345689999999999999999999999999999998875443  33334 45566665 466789999999999999998


Q ss_pred             C
Q psy3640         613 M  613 (616)
Q Consensus       613 ~  613 (616)
                      .
T Consensus       298 ~  298 (299)
T d1nr0a2         298 P  298 (299)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-36  Score=302.50  Aligned_cols=286  Identities=19%  Similarity=0.254  Sum_probs=223.8

Q ss_pred             eeeEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccc
Q psy3640         313 SAEVTFSPDQSTFCSCSMDHTARIFNTNSGQ--EMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNA  390 (616)
Q Consensus       313 ~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~  390 (616)
                      ..+++|+|+++++++|+.||.|++||..+++  .+..+.+|.++|.+++|+|++++|++++.|++|++||+...      
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~------   83 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR------   83 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT------
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc------
Confidence            3455677777777777777777777776654  56677899999999999999999999999999999999732      


Q ss_pred             ccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecCCCCEEEEEEcCCCCE
Q psy3640         391 YAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC----FYTLKNHEDEVLDIAFDYSGSK  466 (616)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~~~~~~~  466 (616)
                              ...+...+.+|...+.+++|+|+++.+++++.|+.+++|++.....    ......|...|.+++|+|++++
T Consensus        84 --------~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~  155 (371)
T d1k8kc_          84 --------TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL  155 (371)
T ss_dssp             --------EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred             --------ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccc
Confidence                    2234455677889999999999999999999999999998765432    3334568889999999999999


Q ss_pred             EEEEeCCCcEEEEecCCceee--------------eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceE
Q psy3640         467 LATASSDQTANLWTVGGAVEL--------------LQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE  532 (616)
Q Consensus       467 l~~~~~dg~i~iwd~~~~~~~--------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~  532 (616)
                      |++++.|+.+++|+.......              .............+.+++|+|++++|++++.|+.|++||+... .
T Consensus       156 l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~-~  234 (371)
T d1k8kc_         156 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-M  234 (371)
T ss_dssp             EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-T
T ss_pred             eeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc-c
Confidence            999999999999998542110              0111222333455889999999999999999999999999885 5


Q ss_pred             EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc--Ceeee---------------------------------
Q psy3640         533 LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES--GECIQ---------------------------------  577 (616)
Q Consensus       533 ~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~--~~~~~---------------------------------  577 (616)
                      .+..+..|..+|.+++|+|++++|++| .|+.+++|....  +....                                 
T Consensus       235 ~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (371)
T d1k8kc_         235 AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS  313 (371)
T ss_dssp             EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred             ceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecc
Confidence            677788999999999999999887765 477777765432  21100                                 


Q ss_pred             ------EeccCcccEEEEEEeeCC----CEEEEeeCCCcEEEcccCC
Q psy3640         578 ------VLKAHEDDVFSCGFNYNG----DTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       578 ------~~~~h~~~V~~l~~s~~~----~~l~t~s~Dg~i~vW~~~~  614 (616)
                            ....|.+.|+++++.+.+    ..++|+|.||.|++|++++
T Consensus       314 ~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         314 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             ----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                  001388899999998865    3699999999999999865

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-33  Score=272.27  Aligned_cols=291  Identities=15%  Similarity=0.208  Sum_probs=228.5

Q ss_pred             ceeeEEEcCCCCEEEEEeCCC-cEEEEECCCC--ceeEEeecCC-cCEEEEEEcC--CCCEEEEEECCCcEEEEeccccc
Q psy3640         312 HSAEVTFSPDQSTFCSCSMDH-TARIFNTNSG--QEMHTLKAHT-GPVISLQFSS--DRNMLITGSFDSSIVVWDIQYQF  385 (616)
Q Consensus       312 ~~~~v~~~~~~~~l~~~~~dg-~i~i~d~~~~--~~~~~~~~~~-~~v~~l~~~~--~~~~l~~g~~dg~i~iwd~~~~~  385 (616)
                      +...++|+|+++.++.++.+. .++.|+....  .....+.+|. ..|++++|+|  ++.+|++|+.||+|++||+....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            445568888888888876554 3455654433  3466677774 6799999998  56799999999999999987432


Q ss_pred             CCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeC--CCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCC
Q psy3640         386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSL--DGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYS  463 (616)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~  463 (616)
                      .....        ..........|..+|.+++|+++++.+++++.  ++.+.+|+..+++.+..+.+|...|.+++|+|+
T Consensus        99 ~~~~~--------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  170 (325)
T d1pgua1          99 ESNSV--------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQS  170 (325)
T ss_dssp             GGTEE--------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSS
T ss_pred             ceeee--------ecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccccccc
Confidence            21110        11222345678899999999999999988765  567999999999999999999999999999999


Q ss_pred             CCE-EEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEecCCceEEeEEeeccc
Q psy3640         464 GSK-LATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYS-GSKLATASSDQTAKLWTVGGAVELLQTFYGHS  541 (616)
Q Consensus       464 ~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~  541 (616)
                      +.. +++++.|+.+++|+..... .......+......|.+++|+|+ +.++++++.|+.|++||++++ +.+..+.+|.
T Consensus       171 ~~~~~~~~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~-~~~~~l~~~~  248 (325)
T d1pgua1         171 RPMRSMTVGDDGSVVFYQGPPFK-FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQ  248 (325)
T ss_dssp             SSCEEEEEETTTEEEEEETTTBE-EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTT
T ss_pred             ccceEEEeecccccccccccccc-cceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc-cccccccccc
Confidence            875 6789999999999987653 33444445555567899999996 689999999999999999884 6778888898


Q ss_pred             cCEEEEEEe---cCCCEEEEEECCCcEEEecCCcCeeeeEeccCccc--EEEEEEeeC-CCEEEEeeCCCcEEEccc
Q psy3640         542 NEVSKVSFH---PTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD--VFSCGFNYN-GDTIITASKDNTCCIWRS  612 (616)
Q Consensus       542 ~~v~~l~~s---pdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~--V~~l~~s~~-~~~l~t~s~Dg~i~vW~~  612 (616)
                      .++..+.|+   |+|++|++++.|+.|+|||+++++++..+..|...  +..+++.+. +.+|++++.||+|++||+
T Consensus       249 ~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            888777766   78999999999999999999999999888766543  333444433 348999999999999996

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=266.00  Aligned_cols=269  Identities=20%  Similarity=0.254  Sum_probs=226.7

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeC
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDI  257 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~  257 (616)
                      +++++|+||..+|++++|+|    |+||+.||+|++||+.++     ..+|...|.+++++++..+++++.|+++++|++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTTCCEEEETTTEEEETTE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCCeEEEEeeccccccccc
Confidence            46789999999999999998    999999999999998764     368999999999999988999999999999996


Q ss_pred             CCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCC-cEEE
Q psy3640         258 KSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDH-TARI  336 (616)
Q Consensus       258 ~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg-~i~i  336 (616)
                      .+.       .....+..+++. +++..+ ..+.++.+.+|+..+++.+..+.......++++++..+++++.++ .+++
T Consensus        75 ~~~-------~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~  145 (287)
T d1pgua2          75 TKH-------EFGSQPKVASAN-NDGFTA-VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQV  145 (287)
T ss_dssp             EEE-------ECSSCEEEEEEC-SSSEEE-EEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEE
T ss_pred             ccc-------ccccceeeeeec-cCCceE-EEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeee
Confidence            532       234557778876 555444 456677899999999999999888888888999999999888875 6999


Q ss_pred             EECCCCceeEEee-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcce-EEEecCcccee
Q psy3640         337 FNTNSGQEMHTLK-AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI-HILTGHSQEIS  414 (616)
Q Consensus       337 ~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~  414 (616)
                      |++...+....+. .|..++.+++|+|++.+|++|+.||.|++||+.                ..... ..+..|...|.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~----------------~~~~~~~~~~~h~~~v~  209 (287)
T d1pgua2         146 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ----------------SREVKTSRWAFRTSKIN  209 (287)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT----------------TTEEEECCSCCCSSCEE
T ss_pred             eeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeec----------------ccccccccccccccccc
Confidence            9998766655554 477899999999999999999999999999986                33322 23567889999


Q ss_pred             EEEEccC----------CCEEEEEeCCCcEEEEeCCC-CeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy3640         415 NCLFNFS----------NSMIASSSLDGTAKLWDVRT-MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTV  481 (616)
Q Consensus       415 ~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~  481 (616)
                      +++|+|.          +.++++|+.|+.|++||+++ .+.+..+.+|...|++++|+|++ .+++++.|+.|++|++
T Consensus       210 ~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             eeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            9999864          56899999999999999976 56677778899999999999986 6889999999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-32  Score=270.13  Aligned_cols=301  Identities=21%  Similarity=0.408  Sum_probs=226.6

Q ss_pred             EEEEeccCCcE-EEEEEcCCCC-EEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEe
Q psy3640         222 ICTYRGHQNVV-YAVAFSEPYG-CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA  299 (616)
Q Consensus       222 ~~~~~~h~~~I-~~l~fs~~~~-lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd  299 (616)
                      ..+++||...| +|++|+  ++ +++|+.||+|+|||+.+++.+.++.+|.++|++++|+ + ++.|++++.|++|++|+
T Consensus         5 ~~tL~GH~~~vitc~~~~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s-~-~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-H-GGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEEEEEE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEE-T-TTEEEEEETTCCEEEEE
T ss_pred             cEEECCcCCCcEEEEEEC--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEc-C-CCEEEEEeccccccccc
Confidence            45789998875 677765  45 6699999999999999999999999999999999998 4 46899999999999999


Q ss_pred             CCCcceeEEeeecee-----eEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC
Q psy3640         300 SAKEECIQTYRGHSA-----EVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS  374 (616)
Q Consensus       300 ~~~~~~~~~~~~~~~-----~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg  374 (616)
                      ....+..........     ...+.+++..+++++.|+.|++||+.+.............. .....+..          
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~----------  149 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEE----------  149 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTTT----------
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceecccc----------
Confidence            999887766543332     23578899999999999999999998776544333211111 11111110          


Q ss_pred             cEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCC
Q psy3640         375 SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDE  454 (616)
Q Consensus       375 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  454 (616)
                                              ..........|...+.  .+.++++.++++..|+.+++||+++++.+.....+...
T Consensus       150 ------------------------~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  203 (355)
T d1nexb2         150 ------------------------NPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR  203 (355)
T ss_dssp             ------------------------CTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             ------------------------ccceeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccc
Confidence                                    1112222233333333  34567889999999999999999999999999888899


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEe
Q psy3640         455 VLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL  534 (616)
Q Consensus       455 v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~  534 (616)
                      +.++.++|++..+++++.|+.+++|+..+.                                               ..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-----------------------------------------------~~~  236 (355)
T d1nexb2         204 IYSTIYDHERKRCISASMDTTIRIWDLENG-----------------------------------------------ELM  236 (355)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEETTTC-----------------------------------------------CEE
T ss_pred             cccccccccceeeecccccceEEeeecccc-----------------------------------------------ccc
Confidence            999999999999999999999999988653                                               344


Q ss_pred             EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEE-EeeCCCEEEEeeCCCcEEEcccC
Q psy3640         535 QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCG-FNYNGDTIITASKDNTCCIWRSM  613 (616)
Q Consensus       535 ~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~-~s~~~~~l~t~s~Dg~i~vW~~~  613 (616)
                      ..+.+|...|+++++++  ++|++|+.||.|++||+.++...  +..|...+.+++ +++++.+|++| .||+|++||++
T Consensus       237 ~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         237 YTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             EEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETT
T ss_pred             ccccccccccccccccc--ceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECC
Confidence            55678999999999865  59999999999999999887654  445666666654 56677766655 58999999998


Q ss_pred             CC
Q psy3640         614 NR  615 (616)
Q Consensus       614 ~~  615 (616)
                      +.
T Consensus       312 tg  313 (355)
T d1nexb2         312 SG  313 (355)
T ss_dssp             TC
T ss_pred             CC
Confidence            75

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-31  Score=255.12  Aligned_cols=276  Identities=26%  Similarity=0.474  Sum_probs=231.6

Q ss_pred             hhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEe
Q psy3640         177 YEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWD  256 (616)
Q Consensus       177 ~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd  256 (616)
                      .+.++...+|...|+|++|  +|++||||+.||+|+|||+.+++.+.++.+|.++|++++|.+ ..+++++.|+.|++|+
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~-~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-RVIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS-SEEEEEETTSCEEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeeccc-ceeecccccccccccc
Confidence            3455667789999999765  789999999999999999999999999999999999999842 2366999999999999


Q ss_pred             CCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE---EeeeceeeE-EEcCCCCEEEEEeCCC
Q psy3640         257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ---TYRGHSAEV-TFSPDQSTFCSCSMDH  332 (616)
Q Consensus       257 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~v-~~~~~~~~l~~~~~dg  332 (616)
                      +..+........+........   .....++++..++.+.+|+........   .+..+...+ ...+....+++++.|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~  158 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLR---FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR  158 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEE---CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred             ccccccccccccccccccccc---ccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCC
Confidence            999998887776665554433   457889999999999999998775433   334444444 4556678899999999


Q ss_pred             cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccc
Q psy3640         333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE  412 (616)
Q Consensus       333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (616)
                      .+++||..+++.+..+.++...+..+.++  +..+++++.||.|++||++                ....+....++...
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~----------------~~~~~~~~~~~~~~  220 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE----------------CGACLRVLEGHEEL  220 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETT----------------TCCEEEEECCCSSC
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecc----------------cceeeeeeccccee
Confidence            99999999999999999999999888875  4689999999999999998                66777778888777


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEeCCC---------CeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy3640         413 ISNCLFNFSNSMIASSSLDGTAKLWDVRT---------MCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWT  480 (616)
Q Consensus       413 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd  480 (616)
                      +..  +++++.++++|+.||.|++||+.+         ..++..+.+|.+.|.+++|+  +.+|++++.||+|++||
T Consensus       221 v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         221 VRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             eee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            764  566788999999999999999643         35678889999999999995  56899999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.7e-32  Score=259.43  Aligned_cols=281  Identities=18%  Similarity=0.250  Sum_probs=224.6

Q ss_pred             CcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEE
Q psy3640         219 GHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLW  298 (616)
Q Consensus       219 ~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iw  298 (616)
                      .++++++++|..+|++++|+|   +++|+.||+|++||+.++     ..+|...|.+++++ + +..+++++.|+++++|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~---l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~-~-~~~~~s~s~D~~v~~w   72 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS-K-AQEYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT---TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECC-S-TTCCEEEETTTEEEET
T ss_pred             cceeEEECCCCCceEEEEECc---EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEec-C-CCeEEEEeeccccccc
Confidence            467889999999999999987   889999999999998764     46799999999997 4 4678999999999999


Q ss_pred             eCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC-cEE
Q psy3640         299 ASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS-SIV  377 (616)
Q Consensus       299 d~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg-~i~  377 (616)
                      +....+    +......+++++++..++++ .++.+.+|+..+++.+..+..+ .++  .+++++++.+++++.++ .++
T Consensus        73 ~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~~~~~v~  144 (287)
T d1pgua2          73 GITKHE----FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLEEGNTIQ  144 (287)
T ss_dssp             TEEEEE----CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEETTTSCEE
T ss_pred             cccccc----cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeeeccccceee
Confidence            976533    23334456778877666665 5667889999999888887643 344  35566778888888775 799


Q ss_pred             EEecccccCCcccccccccccCCcceEE-EecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCE
Q psy3640         378 VWDIQYQFGTRNAYAESTYRASHKPIHI-LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT-LKNHEDEV  455 (616)
Q Consensus       378 iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v  455 (616)
                      +|++.                ....... ...+...+++++|+|++.+|++|+.||.|++||+.++..... +..|..+|
T Consensus       145 ~~~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v  208 (287)
T d1pgua2         145 VFKLS----------------DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKI  208 (287)
T ss_dssp             EEETT----------------EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCE
T ss_pred             eeecc----------------ccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccccccccc
Confidence            99986                2222222 234677899999999999999999999999999999876654 56889999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeE
Q psy3640         456 LDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQ  535 (616)
Q Consensus       456 ~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~  535 (616)
                      .+++|+|.+....                                    .+.+++.++++|+.|+.|++||++.....+.
T Consensus       209 ~~~~~~p~~~~~~------------------------------------~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~  252 (287)
T d1pgua2         209 NAISWKPAEKGAN------------------------------------EEEIEEDLVATGSLDTNIFIYSVKRPMKIIK  252 (287)
T ss_dssp             EEEEECCCC------------------------------------------CCSCCEEEEEETTSCEEEEESSCTTCCEE
T ss_pred             ceeeecccccccc------------------------------------cccCCCCeeEeecCCCeEEEEECCCCCeEEE
Confidence            9999998765322                                    2344677899999999999999877667778


Q ss_pred             EeeccccCEEEEEEecCCCEEEEEECCCcEEEecC
Q psy3640         536 TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWST  570 (616)
Q Consensus       536 ~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~  570 (616)
                      .+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus       253 ~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         253 ALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             ETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            888999999999999986 6899999999999986

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-31  Score=261.32  Aligned_cols=276  Identities=16%  Similarity=0.220  Sum_probs=223.9

Q ss_pred             ceEEEEECCCCCEEEEEECCC-cEEEEECCCC--cEEEEEeccC-CcEEEEEEcCC--CCEE-EEECCCcEEEEeCCCCc
Q psy3640         189 PLTNITFDKFGTRCLTGSYDR-TCKLWDIKSG--HEICTYRGHQ-NVVYAVAFSEP--YGCL-TGSYDRTCKLWDIKSGH  261 (616)
Q Consensus       189 ~i~~v~~s~~g~~lasgs~dg-~i~iwd~~~~--~~~~~~~~h~-~~I~~l~fs~~--~~ll-s~s~d~~I~iwd~~~~~  261 (616)
                      .+++++|+|+|+.||.++.+. .|+.|+....  .....+.+|. ..|++++|+|+  +.++ +|+.||+|++||+..++
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            468899999999999987664 3566765443  4567788885 68999999984  4555 89999999999997654


Q ss_pred             eE--------EEeeCCCCcEEEEEEeCCCCCEEEEEEC--CCeEEEEeCCCcceeEEeeeceee---EEEcCCCCE-EEE
Q psy3640         262 EI--------CTYRGHQNVVYAVAFSEPYGDKILTGSF--DKTLKLWASAKEECIQTYRGHSAE---VTFSPDQST-FCS  327 (616)
Q Consensus       262 ~~--------~~~~~h~~~V~~l~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~~~~-l~~  327 (616)
                      ..        ..+..|.++|.+++|+ +++.++++++.  ++.+++|+..+++++..+.+|...   ++|+|++.. +++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          99 ESNSVEVNVKSEFQVLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGTEEEEEEEEEEECCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             ceeeeecccccccccccCcEEEEEEC-CCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            22        3356788999999999 88999888765  678999999999999999877654   579998875 678


Q ss_pred             EeCCCcEEEEECCCCceeEEee---cCCcCEEEEEEcCC-CCEEEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640         328 CSMDHTARIFNTNSGQEMHTLK---AHTGPVISLQFSSD-RNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI  403 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~~~-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  403 (616)
                      ++.|+.+++||..+.+......   .|...|.+++|+|+ +.++++++.|+.|++||++                ....+
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~----------------~~~~~  241 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK----------------SGEFL  241 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT----------------TCCEE
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec----------------ccccc
Confidence            9999999999998887766653   56778999999996 6899999999999999997                77778


Q ss_pred             EEEecCccceeEEEEc---cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCC--EEEEEEcCC-CCEEEEEeCCCcEE
Q psy3640         404 HILTGHSQEISNCLFN---FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDE--VLDIAFDYS-GSKLATASSDQTAN  477 (616)
Q Consensus       404 ~~~~~~~~~i~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~~~~-~~~l~~~~~dg~i~  477 (616)
                      ..+.+|..++..+.|+   +++++|++++.|+.|++||+++++++..+..+...  +..+++.+. +.++++++.||.|+
T Consensus       242 ~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~  321 (325)
T d1pgua1         242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN  321 (325)
T ss_dssp             EECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEE
T ss_pred             ccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEE
Confidence            8888888888777666   68999999999999999999999999888766543  333333332 34789999999999


Q ss_pred             EEec
Q psy3640         478 LWTV  481 (616)
Q Consensus       478 iwd~  481 (616)
                      +||+
T Consensus       322 vwdl  325 (325)
T d1pgua1         322 FYEL  325 (325)
T ss_dssp             EEET
T ss_pred             EEEC
Confidence            9996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-31  Score=263.98  Aligned_cols=303  Identities=11%  Similarity=0.072  Sum_probs=230.1

Q ss_pred             hhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEECCCcE
Q psy3640         178 EKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEIC---TYRGHQNVVYAVAFSEPYG--CLTGSYDRTC  252 (616)
Q Consensus       178 ~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~---~~~~h~~~I~~l~fs~~~~--lls~s~d~~I  252 (616)
                      ++++.+++|.+.|++|+|+|+|++||+|+.||+|+|||+.++....   ...+|..+|.+++|+|++.  +++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            4567889999999999999999999999999999999997765433   3347999999999998764  5589999999


Q ss_pred             EEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee---------ceeeEEEcCCCC
Q psy3640         253 KLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG---------HSAEVTFSPDQS  323 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~v~~~~~~~  323 (616)
                      ++|++..+........+...+....+.+++...+++++.++++++||++.+........         ......+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99999999887777766655544444447889999999999999999876654433321         112346788999


Q ss_pred             EEEEEeCCCcEEEEECCCCcee---EEeecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEecccccCCcccccccccccC
Q psy3640         324 TFCSCSMDHTARIFNTNSGQEM---HTLKAHTGPVISLQFSS-DRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRAS  399 (616)
Q Consensus       324 ~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  399 (616)
                      .+++++.|+.|++||+...+..   .....+...+.+..+.+ ++..+++++.||.+.+|+................. .
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~-~  240 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR-C  240 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE-C
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee-e
Confidence            9999999999999999876543   22334455566666654 67899999999999999987443222111110000 1


Q ss_pred             CcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3640         400 HKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW  479 (616)
Q Consensus       400 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw  479 (616)
                      .........|...+.+++|+|++.+|++|+.||.|++||+++++.+..+..+ ..+..++|+|+++.+++++.|+.+++|
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~  319 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTN  319 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHC
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEe
Confidence            1111123456778899999999999999999999999999999999887643 345567788899999999999888887


Q ss_pred             ecC
Q psy3640         480 TVG  482 (616)
Q Consensus       480 d~~  482 (616)
                      ...
T Consensus       320 ~~~  322 (342)
T d1yfqa_         320 AAI  322 (342)
T ss_dssp             SSS
T ss_pred             eee
Confidence            653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-30  Score=245.06  Aligned_cols=276  Identities=28%  Similarity=0.488  Sum_probs=223.6

Q ss_pred             EEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEEEECCC
Q psy3640         263 ICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTNS  341 (616)
Q Consensus       263 ~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~~  341 (616)
                      +.....|...|+|++|   ++++|++|+.||+|++||+.+++++.++.+|...| ++++++++|++|+.|+.|++|++..
T Consensus         8 i~~~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             EECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS
T ss_pred             EeccCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc
Confidence            4455678889998765   58999999999999999999999999999998877 6888999999999999999999999


Q ss_pred             CceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccC
Q psy3640         342 GQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFS  421 (616)
Q Consensus       342 ~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  421 (616)
                      +........+.....  .+.+....++++..++.+.+|+.....             ..........|...+....+.  
T Consensus        85 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~v~~~~~~--  147 (293)
T d1p22a2          85 GEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAAVNVVDFD--  147 (293)
T ss_dssp             CCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSS-------------CCEEEEEECCCSSCEEEEEEE--
T ss_pred             ccccccccccccccc--cccccccceeecccccceeEeeccccc-------------cccccccccccccccccceec--
Confidence            988777765554433  344566789999999999999987321             233345556677777666654  


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeE
Q psy3640         422 NSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKV  501 (616)
Q Consensus       422 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i  501 (616)
                      ...+++++.|+.+++||.++++.+..+.++...+..+.++  +..+++++.||.|++||+.+.                 
T Consensus       148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~-----------------  208 (293)
T d1p22a2         148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-----------------  208 (293)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC-----------------
T ss_pred             ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc-----------------
Confidence            5678899999999999999999999999888888887775  457888888888888888653                 


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc---------
Q psy3640         502 LDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES---------  572 (616)
Q Consensus       502 ~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~---------  572 (616)
                                                    ..+....+|...+..  +++++.+|++|+.||.|++||+.+         
T Consensus       209 ------------------------------~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~  256 (293)
T d1p22a2         209 ------------------------------ACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG  256 (293)
T ss_dssp             ------------------------------CEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT
T ss_pred             ------------------------------eeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCC
Confidence                                          233344556666654  566788999999999999999754         


Q ss_pred             CeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcc
Q psy3640         573 GECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       573 ~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~  611 (616)
                      ..++..+.+|.++|++++|  ++++|+|+|.||+|++||
T Consensus       257 ~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         257 TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             ceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            3467888999999999988  567899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.7e-30  Score=258.81  Aligned_cols=311  Identities=17%  Similarity=0.243  Sum_probs=217.7

Q ss_pred             EEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcce------eEEeeece------eeEE-Ec---CCCCEEEE
Q psy3640         264 CTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEEC------IQTYRGHS------AEVT-FS---PDQSTFCS  327 (616)
Q Consensus       264 ~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------~~~~~~~~------~~v~-~~---~~~~~l~~  327 (616)
                      ...++|.+.|.+++++   +++++++|.|++|++||..+.+.      ......+.      .... ..   .+...+++
T Consensus         8 ~~~~~H~~~I~~v~~~---~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           8 NAGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EESSCSSSCEEEEEEC---SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ecCCcccCccEEEEEe---CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            4557999999999987   47999999999999999765432      11111111      1111 11   13356789


Q ss_pred             EeCCCcEEEEECCCCceeEE-----e-----ecCCcCEEEEEEcCC-----CCEEEEEECCCcEEEEecccccCCccccc
Q psy3640         328 CSMDHTARIFNTNSGQEMHT-----L-----KAHTGPVISLQFSSD-----RNMLITGSFDSSIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~-----~-----~~~~~~v~~l~~~~~-----~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  392 (616)
                      ++.||.+++|++........     .     ..+...+..++|.++     +.++++++.||.+++|++...........
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            99999999998764432111     1     124556778888765     46889999999999999864321111100


Q ss_pred             ccccc--cCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee------cCCCCEEEEEEcCCC
Q psy3640         393 ESTYR--ASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK------NHEDEVLDIAFDYSG  464 (616)
Q Consensus       393 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~l~~~~~~  464 (616)
                      .....  ...........+...+.+++|+|++ ++++|+.||.|++||+.+++++..+.      +|..+|.+++|+|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence            00000  0001111223345568899999987 88999999999999999998876554      578899999999999


Q ss_pred             CEEEEEeCCCc---EEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccc
Q psy3640         465 SKLATASSDQT---ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHS  541 (616)
Q Consensus       465 ~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~  541 (616)
                      ++|++++.|++   +++||+..+.... .+....                                 ........+.+|.
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~-~l~~~~---------------------------------~~~~~~~~~~gH~  289 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIG-SLSVPT---------------------------------HSSQASLGEFAHS  289 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEE-EECBC-----------------------------------------CCBSBS
T ss_pred             ceeeeecCCCCcceeeecccccceeee-eecccc---------------------------------ccccceeeeeccc
Confidence            99999999875   8999998753221 111110                                 0023444567899


Q ss_pred             cCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCccc---------------------EEEEEEeeCC-----
Q psy3640         542 NEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDD---------------------VFSCGFNYNG-----  595 (616)
Q Consensus       542 ~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~---------------------V~~l~~s~~~-----  595 (616)
                      +.|++++|+|++++|++|+.|++|++||+++|+++.++++|.+.                     +.++.|.+.+     
T Consensus       290 ~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (393)
T d1sq9a_         290 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGM  369 (393)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBST
T ss_pred             CceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceecc
Confidence            99999999999999999999999999999999999999998654                     4566666542     


Q ss_pred             -----CEEEEeeCCCcEEEccc
Q psy3640         596 -----DTIITASKDNTCCIWRS  612 (616)
Q Consensus       596 -----~~l~t~s~Dg~i~vW~~  612 (616)
                           +.|++++.|+.|++|+-
T Consensus       370 ~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         370 GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             TCTTSCEEEEEETTTEEEEEEE
T ss_pred             ccCCCCEEEEEEcCCeEEEEeC
Confidence                 35888889999999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-30  Score=261.54  Aligned_cols=323  Identities=16%  Similarity=0.153  Sum_probs=225.4

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCc------EEEEEeccCCcEEEEEEc------CC-CCE-EE
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGH------EICTYRGHQNVVYAVAFS------EP-YGC-LT  245 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~------~~~~~~~h~~~I~~l~fs------~~-~~l-ls  245 (616)
                      ....++|...|.++++++  ++++|+|.|++|+|||..+.+      .......|...+..+...      +. ..+ ++
T Consensus         7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            356789999999999975  799999999999999986653      233444565554433321      11 123 38


Q ss_pred             EECCCcEEEEeCCCCceEE-----Ee-----eCCCCcEEEEEEeCC----CCCEEEEEECCCeEEEEeCCCcc-------
Q psy3640         246 GSYDRTCKLWDIKSGHEIC-----TY-----RGHQNVVYAVAFSEP----YGDKILTGSFDKTLKLWASAKEE-------  304 (616)
Q Consensus       246 ~s~d~~I~iwd~~~~~~~~-----~~-----~~h~~~V~~l~~~~~----~~~~l~s~s~dg~i~iwd~~~~~-------  304 (616)
                      ++.||.|++|++.......     ..     ..+...+..+++.+.    .+.++++++.||++++|++....       
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~  164 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  164 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceee
Confidence            8899999999976543211     11     124556888888732    24689999999999999974321       


Q ss_pred             ----ee----EEe------eeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe------ecCCcCEEEEEEcCCC
Q psy3640         305 ----CI----QTY------RGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTL------KAHTGPVISLQFSSDR  364 (616)
Q Consensus       305 ----~~----~~~------~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~l~~~~~~  364 (616)
                          ..    ...      ......++|+|++ ++++|+.||.|++||+.+++.+..+      .+|..+|.+++|+|+|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg  243 (393)
T d1sq9a_         165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG  243 (393)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred             eeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccc
Confidence                00    111      1123457899987 8899999999999999999877654      4688999999999999


Q ss_pred             CEEEEEECCCc---EEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy3640         365 NMLITGSFDSS---IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRT  441 (616)
Q Consensus       365 ~~l~~g~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  441 (616)
                      ++|++|+.|++   |++||+..........   ...........+.+|...|++++|+|++++|++|+.|++|++||+++
T Consensus       244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~---~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         244 SLLAIAHDSNSFGCITLYETEFGERIGSLS---VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             TEEEEEEEETTEEEEEEEETTTCCEEEEEC---BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             ceeeeecCCCCcceeeecccccceeeeeec---cccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence            99999999875   8999987432111100   00012233334468999999999999999999999999999999999


Q ss_pred             CeEEEEeecCCCCEE----EEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEe
Q psy3640         442 MCCFYTLKNHEDEVL----DIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATAS  517 (616)
Q Consensus       442 ~~~~~~~~~~~~~v~----~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  517 (616)
                      ++++.++.+|.+.|.    .++|+|++..+++++   ...++.+......         .       ........+++++
T Consensus       321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~~  381 (393)
T d1sq9a_         321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRS---------G-------MGADLNESLCCVC  381 (393)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC---EEEEEEECTTTSB---------S-------TTCTTSCEEEEEE
T ss_pred             CCEEEEECCcCCcccCCccEEEECCCCCEEEEcc---cceEEECccCcee---------c-------cccCCCCEEEEEE
Confidence            999999999998876    478999998876443   2222222111000         0       0012345688999


Q ss_pred             CCCcEEEEec
Q psy3640         518 SDQTAKLWTV  527 (616)
Q Consensus       518 ~dg~i~vwd~  527 (616)
                      .|+.|++|..
T Consensus       382 ~d~~ir~~~~  391 (393)
T d1sq9a_         382 LDRSIRWFRE  391 (393)
T ss_dssp             TTTEEEEEEE
T ss_pred             cCCeEEEEeC
Confidence            9999999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.2e-30  Score=253.00  Aligned_cols=300  Identities=12%  Similarity=0.133  Sum_probs=219.5

Q ss_pred             ceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECC
Q psy3640         261 HEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTN  340 (616)
Q Consensus       261 ~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~  340 (616)
                      +.++..++|.+.|++++|+ |++++|++|+.||+|++||+.++....                                 
T Consensus         2 ~~v~~~~~h~d~I~~l~fs-p~~~~L~s~s~Dg~v~iwd~~~~~~~~---------------------------------   47 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKII-PSKSLLLITSWDGSLTVYKFDIQAKNV---------------------------------   47 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEE-GGGTEEEEEETTSEEEEEEEETTTTEE---------------------------------
T ss_pred             CeEEcCCCCCCCEEEEEEe-CCCCEEEEEECCCeEEEEEccCCCcce---------------------------------
Confidence            3456678899999999999 788999999999998888865433211                                 


Q ss_pred             CCceeEEeecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCcc-ceeEEEE
Q psy3640         341 SGQEMHTLKAHTGPVISLQFSSDR-NMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQ-EISNCLF  418 (616)
Q Consensus       341 ~~~~~~~~~~~~~~v~~l~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~  418 (616)
                         .+.....|..+|.+++|+|++ .+|++|+.||.|++|++.                ..........+.. ......+
T Consensus        48 ---~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~----------------~~~~~~~~~~~~~~~~~~~~~  108 (342)
T d1yfqa_          48 ---DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI----------------GSPSFQALTNNEANLGICRIC  108 (342)
T ss_dssp             ---EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS----------------SSSSEEECBSCCCCSCEEEEE
T ss_pred             ---EEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc----------------ccccccccccccccccccccc
Confidence               112223589999999999864 589999999999999997                3334444433333 3345556


Q ss_pred             ccCCCEEEEEeCCCcEEEEeCCCCeE----EEEeecC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEe
Q psy3640         419 NFSNSMIASSSLDGTAKLWDVRTMCC----FYTLKNH--EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFY  492 (616)
Q Consensus       419 ~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~--~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  492 (616)
                      .++...+++++.++.+++||++++..    ......+  ........+.+.+..+++++.|+.+++|++...........
T Consensus       109 ~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  188 (342)
T d1yfqa_         109 KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE  188 (342)
T ss_dssp             EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred             ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeee
Confidence            77889999999999999999865422    2222222  23345567778889999999999999999976544333222


Q ss_pred             ccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceE--------EeE------EeeccccCEEEEEEecCCCEEEE
Q psy3640         493 GHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVE--------LLQ------TFYGHSNEVSKVSFHPTGKLVLS  558 (616)
Q Consensus       493 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~--------~~~------~~~~h~~~v~~l~~spdg~~l~s  558 (616)
                      .............+..++..+++++.||.+.+|+......        ...      ....|...|++++|+|++++||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~las  268 (342)
T d1yfqa_         189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT  268 (342)
T ss_dssp             ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred             ecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEE
Confidence            2222222233344556788999999999999998754211        111      12346678999999999999999


Q ss_pred             EECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         559 GSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       559 ~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      |+.||.|++||+++++.+..+..+. .+..++|+|++++|++++.|+++++|....
T Consensus       269 g~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         269 AGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             ECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence            9999999999999999998886543 345678899999999999999888887643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=8.5e-31  Score=261.06  Aligned_cols=328  Identities=8%  Similarity=-0.009  Sum_probs=245.2

Q ss_pred             EEEEcC-CCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCC--eEEEEeCCCcceeEEee
Q psy3640         234 AVAFSE-PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDK--TLKLWASAKEECIQTYR  310 (616)
Q Consensus       234 ~l~fs~-~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~  310 (616)
                      .-.||| ||++++.+.+|.|++||+.++..++.  +|...|.+++|+ |+++.|++++.+.  .|++||..+++......
T Consensus         7 ~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~s-pDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRG-GDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             EEEEEECGGGCEEEEETTEEEEECTTSSBEEEC--SCCSCEEEEEEC-SSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             cccccCCCCCEEEEEECCeEEEEECCCCcEEEc--cCCCCEEEEEEC-CCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            467999 99988777889999999998877653  699999999999 8899988877654  79999999887654332


Q ss_pred             --eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEE
Q psy3640         311 --GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS----------FDSSIVV  378 (616)
Q Consensus       311 --~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~----------~dg~i~i  378 (616)
                        .....++|+|+++++++++.++.+.+|++.+++....+..|...+.+++|+|+|++|+.+.          .++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence              2234568999999999999999999999999999999999999999999999999998654          3456889


Q ss_pred             EecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-------EEEeecC
Q psy3640         379 WDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC-------FYTLKNH  451 (616)
Q Consensus       379 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~  451 (616)
                      ||+.                 .........+...+..++|+|+|+.|++++.++.+.+||......       ...+..+
T Consensus       164 ~d~~-----------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  226 (360)
T d1k32a3         164 YDME-----------------GRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI  226 (360)
T ss_dssp             EETT-----------------TTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESS
T ss_pred             eccc-----------------cCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecc
Confidence            9985                 233445566777888999999999999999999999999765432       2333344


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCc---EEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy3640         452 EDEVLDIAFDYSGSKLATASSDQT---ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVG  528 (616)
Q Consensus       452 ~~~v~~l~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~  528 (616)
                      ...+..+.+++++..++++..+..   .++|.+.........+..+......+.....++.+.+++.++.++.+++||+.
T Consensus       227 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  306 (360)
T d1k32a3         227 PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK  306 (360)
T ss_dssp             TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETT
T ss_pred             cCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECC
Confidence            455555666777666655443321   22333322111222233333332223333333444567888889999999998


Q ss_pred             CceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccE
Q psy3640         529 GAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDV  586 (616)
Q Consensus       529 ~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V  586 (616)
                      +...     ..|.+.|.+++|||||++|++++.||.|++||+++++...++..+..|+
T Consensus       307 ~~~~-----~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~~  359 (360)
T d1k32a3         307 TRKV-----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPL  359 (360)
T ss_dssp             TCCE-----EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred             CCeE-----EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEEeccccc
Confidence            7532     2355679999999999999999999999999999999988887776665

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=4.6e-29  Score=248.39  Aligned_cols=314  Identities=11%  Similarity=0.035  Sum_probs=236.1

Q ss_pred             EEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe-eeceeeEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEeecC
Q psy3640         275 AVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY-RGHSAEVTFSPDQSTFCSCSMDH--TARIFNTNSGQEMHTLKAH  351 (616)
Q Consensus       275 ~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~  351 (616)
                      .-.|||.+|+++++++. |.|.+||..++...+.. ......++|+||++.|++++.+.  .|++||.++++. ..+..|
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~   84 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEEN   84 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCC
Confidence            45699559999999875 79999999988776542 12234568999999998776553  799999987765 456779


Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe--
Q psy3640         352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS--  429 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--  429 (616)
                      ...+.+++|+|++++|++++.++.+++|+..                .......+..+...+.+++|+|++++|+.+.  
T Consensus        85 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~  148 (360)
T d1k32a3          85 LGNVFAMGVDRNGKFAVVANDRFEIMTVDLE----------------TGKPTVIERSREAMITDFTISDNSRFIAYGFPL  148 (360)
T ss_dssp             CCSEEEEEECTTSSEEEEEETTSEEEEEETT----------------TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred             CceEEeeeecccccccceecccccccccccc----------------ccceeeeeecccccccchhhccceeeeeeeccc
Confidence            9999999999999999999999999999997                6677778888999999999999999998654  


Q ss_pred             --------CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceee------eeEEeccC
Q psy3640         430 --------LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVEL------LQTFYGHS  495 (616)
Q Consensus       430 --------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~  495 (616)
                              .++.+++||+.+++.... ..+...+..++|+|+|+.|++++.++.+.+|+.......      ......+.
T Consensus       149 ~~~~~~~~~~~~~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  227 (360)
T d1k32a3         149 KHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP  227 (360)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST
T ss_pred             cccceeeccccceeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc
Confidence                    345699999998876544 456778899999999999999999999999997543211      11111111


Q ss_pred             CCeeeEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCceEEeEEeeccccCEEEEEEecCC---CEEEEEECCCcEEE
Q psy3640         496 NEVSKVLDIAFDYSGSKLATASSDQ-----TAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTG---KLVLSGSQDTTCRL  567 (616)
Q Consensus       496 ~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg---~~l~s~s~dg~i~i  567 (616)
                      ..   ...+.+++++..++.+..+.     .+..++...+  ....+..+.+.+..+.+.+.+   .++++++.++.+++
T Consensus       228 ~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         228 GS---PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPG--DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             TC---CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCB--CEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred             Cc---cccceECCCcCcccccceeecccccceeecccCcC--ceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEE
Confidence            11   12235666666666554332     2333333332  223344555666666665554   47788899999999


Q ss_pred             ecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCCC
Q psy3640         568 WSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD  616 (616)
Q Consensus       568 wd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~e  616 (616)
                      ||+++++..    .|.+.|.+++|||||++|++++.||.|++|++..+|
T Consensus       303 ~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         303 YDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             EECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            999887653    345669999999999999999999999999998754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=2.2e-28  Score=249.21  Aligned_cols=352  Identities=11%  Similarity=0.022  Sum_probs=256.9

Q ss_pred             CCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceE--EEee---CC
Q psy3640         196 DKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEI--CTYR---GH  269 (616)
Q Consensus       196 s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~--~~~~---~h  269 (616)
                      +++.-++++.+.+|+|.|||.++++.+..+..|. .+..++|||||+++ +++.|++|++||+.+++..  ..+.   +|
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            3333445888899999999999999999998774 69999999999966 7889999999999987643  3332   45


Q ss_pred             CCcEEEEEEeCCCCCEE-EEEECCCeEEEEeCCCcceeEEeeeceeeE---EEcCCCCEEEEEeCCCcEEEEECCCCcee
Q psy3640         270 QNVVYAVAFSEPYGDKI-LTGSFDKTLKLWASAKEECIQTYRGHSAEV---TFSPDQSTFCSCSMDHTARIFNTNSGQEM  345 (616)
Q Consensus       270 ~~~V~~l~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v---~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  345 (616)
                      .+.+.+..|+ |+|+++ ++++.++++++||..+++.+..+..+...+   .+.                          
T Consensus       108 ~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~--------------------------  160 (432)
T d1qksa2         108 RSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH--------------------------  160 (432)
T ss_dssp             EEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE--------------------------
T ss_pred             CCeEEecccC-CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc--------------------------
Confidence            5556666666 778875 677888999999999888887766544321   222                          


Q ss_pred             EEeecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEecccccCCcccccccccccCCcceEEE-ecCccceeEEEEccCCC
Q psy3640         346 HTLKAHTGPVISLQFSSDRNMLI-TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNS  423 (616)
Q Consensus       346 ~~~~~~~~~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~  423 (616)
                           +......+.++|++..++ +...++.|.+||..                ........ ..+......++++|+++
T Consensus       161 -----~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~----------------~~~~~~~~~i~~g~~~~~~~~spdg~  219 (432)
T d1qksa2         161 -----PEPRVAAILASHYRPEFIVNVKETGKILLVDYT----------------DLNNLKTTEISAERFLHDGGLDGSHR  219 (432)
T ss_dssp             -----SCCCEEEEEECSSSSEEEEEETTTTEEEEEETT----------------CSSEEEEEEEECCSSEEEEEECTTSC
T ss_pred             -----CCCceeEEEECCCCCEEEEEEccCCeEEEEEcc----------------CCCcceEEEEcccCccccceECCCCC
Confidence                 334455678899888764 45567899999986                33332222 23455678899999999


Q ss_pred             EEEEEeCC-CcEEEEeCCCCeEEEEeec-----CCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeEEeccCC
Q psy3640         424 MIASSSLD-GTAKLWDVRTMCCFYTLKN-----HEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGGAVELLQTFYGHSN  496 (616)
Q Consensus       424 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~-----~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~  496 (616)
                      ++++++.+ +.+.++|..+++....+..     +........+...+...++.. .++.+.+|......        +..
T Consensus       220 ~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~--------~~~  291 (432)
T d1qksa2         220 YFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG--------HPD  291 (432)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------CTT
T ss_pred             EEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc--------ccc
Confidence            88777754 5799999999988877653     333445555555555554443 37788888765431        222


Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeee
Q psy3640         497 EVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECI  576 (616)
Q Consensus       497 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~  576 (616)
                      ....+....++|++..+++++.++..++|+....       ..|......+++ ||++.|++++.|+.+++|++.++..+
T Consensus       292 ~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l  363 (432)
T d1qksa2         292 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL-------NPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI  363 (432)
T ss_dssp             TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT-------CSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC
T ss_pred             cccEEEEEEEcCCCCeEEEEecCCccceeecccC-------CCCCCeeeEEEE-EechhhcccccCCceEeccccccccc
Confidence            3345777899999999999999999999987542       234444445665 99999999999999999998666433


Q ss_pred             eEeccCcccEEEEEEeeCCCEEEEee-----CCCcEEEcccCCC
Q psy3640         577 QVLKAHEDDVFSCGFNYNGDTIITAS-----KDNTCCIWRSMNR  615 (616)
Q Consensus       577 ~~~~~h~~~V~~l~~s~~~~~l~t~s-----~Dg~i~vW~~~~~  615 (616)
                         ..|...|.+++|||||++++.+.     .||.|+|||..+.
T Consensus       364 ---~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~  404 (432)
T d1qksa2         364 ---TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  404 (432)
T ss_dssp             ---CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             ---CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence               35677899999999999886553     4688999998774

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=4.4e-27  Score=239.99  Aligned_cols=342  Identities=12%  Similarity=-0.001  Sum_probs=230.4

Q ss_pred             ECCCCC--EEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EEECCCcEEEEeCCCCceEEEe-----
Q psy3640         195 FDKFGT--RCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TGSYDRTCKLWDIKSGHEICTY-----  266 (616)
Q Consensus       195 ~s~~g~--~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~s~d~~I~iwd~~~~~~~~~~-----  266 (616)
                      +++|.+  ++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||+++ +++.|++|++||+.+++.....     
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            455533  56778889999999999999999999875 58999999999965 8889999999999999754432     


Q ss_pred             eCCCCcEEEEEEeCCCCCEEE-EEECCCeEEEEeCCCcceeEEeeeceee--------------EEEcCCCCEEEEEeCC
Q psy3640         267 RGHQNVVYAVAFSEPYGDKIL-TGSFDKTLKLWASAKEECIQTYRGHSAE--------------VTFSPDQSTFCSCSMD  331 (616)
Q Consensus       267 ~~h~~~V~~l~~~~~~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~~~~~--------------v~~~~~~~~l~~~~~d  331 (616)
                      .+|.+.+.+++|+ |++++++ ++..++.+++||..++++......+...              +..++++..++....+
T Consensus       105 ~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~  183 (426)
T d1hzua2         105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  183 (426)
T ss_dssp             SEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence            2455666677777 7888765 4557999999999999888777654432              3455565555544433


Q ss_pred             -CcEEEEECCCCce-eEEeecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEec
Q psy3640         332 -HTARIFNTNSGQE-MHTLKAHTGPVISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG  408 (616)
Q Consensus       332 -g~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (616)
                       +.+.+++...... ......+...+..+.|+|++++++++.. +..+.+++...                .........
T Consensus       184 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~~~  247 (426)
T d1hzua2         184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKD----------------RRLSALVDV  247 (426)
T ss_dssp             TTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTT----------------TEEEEEEEC
T ss_pred             CCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeeccc----------------ccEEEEecc
Confidence             4455555554432 2233457778899999999998887765 45688888763                222222221


Q ss_pred             C--ccceeEEEEccCCC-EE--EEEeCCCcEEEEeCC-------CCeEEEEeecCCCCEEEEEEcCCCCEEEE-------
Q psy3640         409 H--SQEISNCLFNFSNS-MI--ASSSLDGTAKLWDVR-------TMCCFYTLKNHEDEVLDIAFDYSGSKLAT-------  469 (616)
Q Consensus       409 ~--~~~i~~~~~~~~~~-~l--~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-------  469 (616)
                      .  ........+...+. .+  +..+.++.+.+|+..       .++....+.+|...+..++|+|++++|++       
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s  327 (426)
T d1hzua2         248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPD  327 (426)
T ss_dssp             SSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSS
T ss_pred             CCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCC
Confidence            1  11111222222221 11  122335566666543       34778889999999999999999999995       


Q ss_pred             EeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEE
Q psy3640         470 ASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSF  549 (616)
Q Consensus       470 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~  549 (616)
                      ++.++++++||+.+......... +                                     .....+..|...|.+++|
T Consensus       328 ~~~~~tv~vwd~~t~~~~~~~~~-~-------------------------------------~~~~~~~~~~~rv~~~~f  369 (426)
T d1hzua2         328 ARISQSVAVFDLKNLDAKYQVLP-I-------------------------------------AEWADLGEGAKRVVQPEY  369 (426)
T ss_dssp             HHHHTCEEEEETTCTTSCCEEEC-H-------------------------------------HHHHCCCSSCCCEEEEEE
T ss_pred             cccCCEEEEEECCCCCcCeEEec-c-------------------------------------chhcccCCCCccEEEEEE
Confidence            33466788888765432211100 0                                     000112346677999999


Q ss_pred             ecCCCEEEEE-----ECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEE
Q psy3640         550 HPTGKLVLSG-----SQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI  598 (616)
Q Consensus       550 spdg~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l  598 (616)
                      ||||++++.+     +.+|.|+|||.++++....+.++.      .++|+|++-
T Consensus       370 SpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             CSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT------CCSEEEEEE
T ss_pred             CCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC------ccCCCceEe
Confidence            9999977543     357889999999999999998764      345776653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.4e-25  Score=228.75  Aligned_cols=321  Identities=10%  Similarity=0.038  Sum_probs=227.7

Q ss_pred             EEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee-----eceee---
Q psy3640         244 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR-----GHSAE---  315 (616)
Q Consensus       244 ls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~---  315 (616)
                      ++.+.||+|++||+.+++.+.++..|. .+..++|+ |+|+++++++.|+++++||+.+++.....+     ++...   
T Consensus        36 V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafS-PDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s  113 (426)
T d1hzua2          36 VTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS  113 (426)
T ss_dssp             EEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEEC-CCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence            477789999999999999999999774 68999999 899999999999999999999987554332     22222   


Q ss_pred             EEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEecccccCCcccccc
Q psy3640         316 VTFSPDQSTFCSC-SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM-LITGSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       316 v~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      ++|+|||++++++ ..++.+.+||..++.....+..|...+....+.+++.. .++++.|+...++...           
T Consensus       114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~-----------  182 (426)
T d1hzua2         114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------  182 (426)
T ss_dssp             CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------
T ss_pred             eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC-----------
Confidence            2578899987554 57899999999999999999888887777777777663 4455556655555432           


Q ss_pred             cccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeE-EEEeecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640         394 STYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCC-FYTLKNHEDEVLDIAFDYSGSKLATASS  472 (616)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~l~~~~~~~~l~~~~~  472 (616)
                                                          ..+.+.+++...... ......+...+..++++|++++++++..
T Consensus       183 ------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         183 ------------------------------------ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             ------------------------------------TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEET
T ss_pred             ------------------------------------CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeee
Confidence                                                112333333333321 1223356778999999999998887764


Q ss_pred             -CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcC-CCCEE--EEEeCCCcEEEEecCCc------eEEeEEeecccc
Q psy3640         473 -DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDY-SGSKL--ATASSDQTAKLWTVGGA------VELLQTFYGHSN  542 (616)
Q Consensus       473 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l--~~~~~dg~i~vwd~~~~------~~~~~~~~~h~~  542 (616)
                       +..+.+++....................  ...+.. ....+  +....++.+.+|+....      .+....+.+|..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~  304 (426)
T d1hzua2         227 NSNKVAVIDSKDRRLSALVDVGKTPHPGR--GANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG  304 (426)
T ss_dssp             TCSEEEEEETTTTEEEEEEECSSCCCCSC--CEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSS
T ss_pred             cccceeeeecccccEEEEeccCCcccccc--eeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCC
Confidence             4568888888764443332222111111  112222 22222  22334677777766432      256778899999


Q ss_pred             CEEEEEEecCCCEEEE-------EECCCcEEEecCCcCeeeeEe---------ccCcccEEEEEEeeCCCEEEEe-----
Q psy3640         543 EVSKVSFHPTGKLVLS-------GSQDTTCRLWSTESGECIQVL---------KAHEDDVFSCGFNYNGDTIITA-----  601 (616)
Q Consensus       543 ~v~~l~~spdg~~l~s-------~s~dg~i~iwd~~~~~~~~~~---------~~h~~~V~~l~~s~~~~~l~t~-----  601 (616)
                      .+..++|+||+++|++       ++.|++|+|||+++++...++         ..|...|.+++|||||++++.+     
T Consensus       305 ~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~  384 (426)
T d1hzua2         305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK  384 (426)
T ss_dssp             CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT
T ss_pred             ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCC
Confidence            9999999999999995       456789999999999877554         2456679999999999977432     


Q ss_pred             eCCCcEEEcccCCC
Q psy3640         602 SKDNTCCIWRSMNR  615 (616)
Q Consensus       602 s~Dg~i~vW~~~~~  615 (616)
                      +.||.|+|||..+.
T Consensus       385 ~~~~~i~v~D~~T~  398 (426)
T d1hzua2         385 NDSSALVVVDDKTL  398 (426)
T ss_dssp             TSCCEEEEEETTTT
T ss_pred             CCCCeEEEEECCCC
Confidence            46789999998874

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.6e-26  Score=233.78  Aligned_cols=342  Identities=12%  Similarity=0.060  Sum_probs=247.2

Q ss_pred             hhhhheecccCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcE--EEEE---eccCCcEEEEEEcCCCCEE--EEEC
Q psy3640         176 RYEKFKMLKSHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHE--ICTY---RGHQNVVYAVAFSEPYGCL--TGSY  248 (616)
Q Consensus       176 ~~~~~~~l~~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~--~~~~---~~h~~~I~~l~fs~~~~ll--s~s~  248 (616)
                      ..+..+.+..|. .+..++|||||+++++++.||+|.+||+.+++.  ...+   .+|.+.+.+..|+|||+++  +++.
T Consensus        51 t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~  129 (432)
T d1qksa2          51 TYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYW  129 (432)
T ss_dssp             TCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             CCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCC
Confidence            445567777764 699999999999999999999999999988763  3333   3677778888899999943  7788


Q ss_pred             CCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEE-E
Q psy3640         249 DRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC-S  327 (616)
Q Consensus       249 d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~-~  327 (616)
                      +++|++||..+++.+..+..|...+....+. ++++..+                            +.++|++..++ +
T Consensus       130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------------v~~s~dg~~~~vs  180 (432)
T d1qksa2         130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYH-PEPRVAA----------------------------ILASHYRPEFIVN  180 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEE-SCCCEEE----------------------------EEECSSSSEEEEE
T ss_pred             CCeEEEEeCccccceeeeccCCccccceecc-CCCceeE----------------------------EEECCCCCEEEEE
Confidence            9999999999999999988776665555555 3333322                            34677777654 4


Q ss_pred             EeCCCcEEEEECCCCceeEEee-cCCcCEEEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         328 CSMDHTARIFNTNSGQEMHTLK-AHTGPVISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       328 ~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      ...++.|.+||..+++...... .+...+..++|+|+|+++++++.+ +.+.++|..                .......
T Consensus       181 ~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~----------------~~~~~~~  244 (432)
T d1qksa2         181 VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK----------------EGKLVAI  244 (432)
T ss_dssp             ETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT----------------TTEEEEE
T ss_pred             EccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc----------------cceEEEE
Confidence            4556889999988776544333 345678899999999988887764 578888876                3333332


Q ss_pred             Eec-----CccceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy3640         406 LTG-----HSQEISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLW  479 (616)
Q Consensus       406 ~~~-----~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iw  479 (616)
                      ...     +........+...+....+.. .++.+.+|+.....    ...+...+....++|++..+++++.+...++|
T Consensus       245 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw  320 (432)
T d1qksa2         245 EDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  320 (432)
T ss_dssp             EECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             eccCccccccCcccceecCCCCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCcccee
Confidence            221     223333344444444444443 37789999876542    23566789999999999999999999999999


Q ss_pred             ecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEE
Q psy3640         480 TVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSG  559 (616)
Q Consensus       480 d~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~  559 (616)
                      .......       +...   ...+++ ||++.+++++.|+.+++|++.+..    .+..|...+.+++|||||++++.+
T Consensus       321 ~~~~~~~-------~~~~---~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~----~l~~~~~~v~~~~fS~DG~~v~~S  385 (432)
T d1qksa2         321 VDATLNP-------EAEI---SGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA----GITEGQPRVVQGEFNKDGTEVWFS  385 (432)
T ss_dssp             EECTTCS-------SHHH---HTCEEE-EEGGGCCCSSSCCCEEEECHHHHH----TCCSSCCEEEEEEECTTSSEEEEE
T ss_pred             ecccCCC-------CCCe---eeEEEE-EechhhcccccCCceEeccccccc----ccCCCCCcEEEeEECCCCCEEEEE
Confidence            8654211       1111   112344 899999999999999999985531    233577789999999999988665


Q ss_pred             E-----CCCcEEEecCCcCeeeeEeccC
Q psy3640         560 S-----QDTTCRLWSTESGECIQVLKAH  582 (616)
Q Consensus       560 s-----~dg~i~iwd~~~~~~~~~~~~h  582 (616)
                      .     .+|.|.|||..++++...+++.
T Consensus       386 ~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         386 VWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             EECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             EecCCCCCCcEEEEECCCceEEeEecCC
Confidence            4     4688999999999998888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.1e-21  Score=189.29  Aligned_cols=263  Identities=17%  Similarity=0.144  Sum_probs=208.1

Q ss_pred             EEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeC
Q psy3640         203 LTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSE  280 (616)
Q Consensus       203 asgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~  280 (616)
                      ++++.|++|.|||+++++.++++... ..+..++|+||++++  +++.++.|++||+.+++.+..+..+. .+..++|+ 
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~-   82 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS-   82 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC-
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccc-
Confidence            46678899999999999999988754 457899999999944  66688999999999999999998775 46889999 


Q ss_pred             CCCC-EEEEEECCCeEEEEeCCCcceeEEeeecee--eEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecCCcCEE
Q psy3640         281 PYGD-KILTGSFDKTLKLWASAKEECIQTYRGHSA--EVTFSPDQSTFCSC-SMDHTARIFNTNSGQEMHTLKAHTGPVI  356 (616)
Q Consensus       281 ~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~  356 (616)
                      +++. .++++..++.+.+|+..+++....+..+..  .++++|++..++.. ..++.+.+|+..+++....+..+ ..+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  161 (301)
T d1l0qa2          83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPK  161 (301)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEE
T ss_pred             cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCce
Confidence            5565 455566788999999999998888776543  46899999987654 45778999999999988887744 5578


Q ss_pred             EEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC---C
Q psy3640         357 SLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD---G  432 (616)
Q Consensus       357 ~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g  432 (616)
                      .++++|++..+++++.+ +.+.+|+..                ...... ..........+++++++..++++..+   +
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  224 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTV----------------TNSVID-TVKVEAAPSGIAVNPEGTKAYVTNVDKYFN  224 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETT----------------TTEEEE-EEECSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred             EEEeeccccceeeeccccccccccccc----------------ceeeee-cccccCCcceeeccccccccccccccceee
Confidence            99999999988888776 456666654                333333 33344556788999999988766543   6


Q ss_pred             cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEecCCceee
Q psy3640         433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKL-ATASSDQTANLWTVGGAVEL  487 (616)
Q Consensus       433 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~  487 (616)
                      .|++||+.+++.+..+.. ...+.+++|+|+|++| ++++.++.|++||+.++...
T Consensus       225 ~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         225 TVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             EEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             eeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            799999999999888764 4568999999999987 56677899999999887433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=1.2e-21  Score=188.94  Aligned_cols=263  Identities=14%  Similarity=0.126  Sum_probs=203.6

Q ss_pred             EEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEecccccCCcccccccccccCCcceE
Q psy3640         326 CSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLI-TGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIH  404 (616)
Q Consensus       326 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  404 (616)
                      ++++.++.|.+||+.+++.+.++... ..+..++|+|||++++ +++.++.|++||+.                ....+.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~----------------t~~~~~   68 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA----------------TNNVIA   68 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT----------------TTEEEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECC----------------CCceee
Confidence            45678899999999999999888744 5578999999999875 56678999999997                666666


Q ss_pred             EEecCccceeEEEEccCCCEEEE-EeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEecC
Q psy3640         405 ILTGHSQEISNCLFNFSNSMIAS-SSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA-SSDQTANLWTVG  482 (616)
Q Consensus       405 ~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~iwd~~  482 (616)
                      .+..+. ....+++++++..+++ +..++.+.+|+..+++....+.. ......++++|++..++.+ ..++.+.+|+..
T Consensus        69 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~  146 (301)
T d1l0qa2          69 TVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTV  146 (301)
T ss_dssp             EEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             eeeccc-cccccccccccccccccccccceeeecccccceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeecc
Confidence            666655 4578999999986655 45667899999999998888774 4567889999999987654 557789999998


Q ss_pred             CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCC-CcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEEC
Q psy3640         483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSD-QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQ  561 (616)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~  561 (616)
                      +...... ....    .....++++|++..++++..+ +.+.+|+... ........ +...+..++|+++++.++.++.
T Consensus       147 ~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~  219 (301)
T d1l0qa2         147 TKAVINT-VSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT-NSVIDTVK-VEAAPSGIAVNPEGTKAYVTNV  219 (301)
T ss_dssp             TTEEEEE-EECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTT-TEEEEEEE-CSSEEEEEEECTTSSEEEEEEE
T ss_pred             ccceeee-cccC----CCceEEEeeccccceeeecccccccccccccc-eeeeeccc-ccCCcceeeccccccccccccc
Confidence            7643332 2222    225678999999998888876 5566666665 34444444 3456788999999998876643


Q ss_pred             ---CCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEE-EEeeCCCcEEEcccCCC
Q psy3640         562 ---DTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTI-ITASKDNTCCIWRSMNR  615 (616)
Q Consensus       562 ---dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~t~s~Dg~i~vW~~~~~  615 (616)
                         ++.|++||..+++.+..+..+ ..+.+++|+|||++| ++++.|++|++||+.+.
T Consensus       220 ~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         220 DKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             CSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence               467999999999999888765 457999999999977 57778999999999875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.91  E-value=4.5e-23  Score=203.21  Aligned_cols=306  Identities=10%  Similarity=0.008  Sum_probs=221.7

Q ss_pred             EEECCCCCEEEEEECCCcEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEeeCC
Q psy3640         193 ITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYR-GHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGH  269 (616)
Q Consensus       193 v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~-~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~h  269 (616)
                      ++|++++++|++++.+++|.|||+++++.+.++. .|...+.+++|+||++++  +++.++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            5789999999999999999999999999999987 566778999999999954  5668899999999999998877643


Q ss_pred             CC------cEEEEEEeCCCCCEEEEEE------------CCCeEEEEeCCCcceeEEeeec-----eeeEEEcCCCCEEE
Q psy3640         270 QN------VVYAVAFSEPYGDKILTGS------------FDKTLKLWASAKEECIQTYRGH-----SAEVTFSPDQSTFC  326 (616)
Q Consensus       270 ~~------~V~~l~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~l~  326 (616)
                      ..      .+..++|+ ++++++++++            .++.+.+|+..+++....+..+     ...+.+++++..++
T Consensus        82 ~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             ccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            22      34578999 8898887765            4678999999888765444322     22345667776655


Q ss_pred             EEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcceEE
Q psy3640         327 SCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHI  405 (616)
Q Consensus       327 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  405 (616)
                      .   ++.+.+|++.+++.+..+..+. ....+.++|++..++.. ..++.+.+++...                      
T Consensus       161 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  214 (346)
T d1jmxb_         161 A---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA----------------------  214 (346)
T ss_dssp             E---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE----------------------
T ss_pred             e---CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeee----------------------
Confidence            4   3568999999999888887544 34566778887765443 3345555554321                      


Q ss_pred             EecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEE-eecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         406 LTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYT-LKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGA  484 (616)
Q Consensus       406 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~  484 (616)
                                 .+......++++..++.+.+||..++..... ...+...+..+.+++++..++.... +.+.+||..+.
T Consensus       215 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~  282 (346)
T d1jmxb_         215 -----------RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQR  282 (346)
T ss_dssp             -----------EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTT
T ss_pred             -----------eeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCC
Confidence                       1122233445555667899999988765543 4457777888888888777766543 35677776543


Q ss_pred             eeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCc
Q psy3640         485 VELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT  564 (616)
Q Consensus       485 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~  564 (616)
                                                                     +.+..+. +...+.+++|+|||++|++++.|+.
T Consensus       283 -----------------------------------------------~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         283 -----------------------------------------------KLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND  314 (346)
T ss_dssp             -----------------------------------------------EEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             -----------------------------------------------cEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc
Confidence                                                           2222222 3456889999999999999999999


Q ss_pred             EEEecCCcCeeeeEeccCccc
Q psy3640         565 CRLWSTESGECIQVLKAHEDD  585 (616)
Q Consensus       565 i~iwd~~~~~~~~~~~~h~~~  585 (616)
                      |++||+++++.+.+++.+.++
T Consensus       315 v~v~D~~t~~~i~~i~~p~g~  335 (346)
T d1jmxb_         315 LAVFNPDTLEKVKNIKLPGGD  335 (346)
T ss_dssp             EEEEETTTTEEEEEEECSSSC
T ss_pred             EEEEECccCCEEEEEECCCCC
Confidence            999999999999998865543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=8.6e-23  Score=200.33  Aligned_cols=287  Identities=8%  Similarity=0.006  Sum_probs=213.3

Q ss_pred             CEEEEEECCCeEEEEeCCCcceeEEeeec-----eeeEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeecCCc----
Q psy3640         284 DKILTGSFDKTLKLWASAKEECIQTYRGH-----SAEVTFSPDQSTFC-SCSMDHTARIFNTNSGQEMHTLKAHTG----  353 (616)
Q Consensus       284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~v~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~----  353 (616)
                      +++++++.|++|.+||+.+++.+.++..+     ...++++||+++++ +++.++.|.+||+.+++.+..+..+..    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57999999999999999999999988643     34689999999875 566789999999999999988876543    


Q ss_pred             -CEEEEEEcCCCCEEEEEEC------------CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEcc
Q psy3640         354 -PVISLQFSSDRNMLITGSF------------DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNF  420 (616)
Q Consensus       354 -~v~~l~~~~~~~~l~~g~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  420 (616)
                       .+..++|+|+++.++++..            +..+.+||..                .......+. +...+..++++|
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~----------------~~~~~~~~~-~~~~~~~~~~s~  144 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE----------------TLSRRKAFE-APRQITMLAWAR  144 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT----------------TTEEEEEEE-CCSSCCCEEECT
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc----------------CCeEEEecc-ccCCceEEEEcC
Confidence             3457899999999988764            5667778875                444444444 445678899999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEecCCceeeeeEEeccCCCee
Q psy3640         421 SNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ-TANLWTVGGAVELLQTFYGHSNEVS  499 (616)
Q Consensus       421 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~  499 (616)
                      +++++++++.  .+.+||..+++....+..+... ....++|++..+....... ....+.                   
T Consensus       145 dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------  202 (337)
T d1pbyb_         145 DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPF-------------------  202 (337)
T ss_dssp             TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEE-------------------
T ss_pred             CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeee-------------------
Confidence            9999999864  4788999999888877644322 2223444443332222221 111111                   


Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640         500 KVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL  579 (616)
Q Consensus       500 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~  579 (616)
                          .....+......+..++.+.+|+...+.........+...+..++++|++.+++.+  ++.+++||+.+++.+..+
T Consensus       203 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~  276 (337)
T d1pbyb_         203 ----YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             ----EEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             ----eeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEE
Confidence                11112222223334456788899888766666677788889999999999998876  478999999999999888


Q ss_pred             ccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCCC
Q psy3640         580 KAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD  616 (616)
Q Consensus       580 ~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~e  616 (616)
                      . +...+.+++|+|||++|++++.||+|+|||+.+.|
T Consensus       277 ~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         277 P-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             E-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             c-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            6 45668899999999999999999999999998753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=1.9e-22  Score=198.64  Aligned_cols=299  Identities=10%  Similarity=0.025  Sum_probs=219.1

Q ss_pred             EEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeec----eeeEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeec
Q psy3640         276 VAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGH----SAEVTFSPDQSTFC-SCSMDHTARIFNTNSGQEMHTLKA  350 (616)
Q Consensus       276 l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~  350 (616)
                      ++|+ ++++++++++.+++|.+||+.+++.+.++..+    ...++|+||+++++ ++..++.|.+||+.+++.+..+..
T Consensus         2 ~a~~-~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCC-CCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            3566 88999999999999999999999999887632    34789999999875 455789999999999998887754


Q ss_pred             CC------cCEEEEEEcCCCCEEEEEE------------CCCcEEEEecccccCCcccccccccccCCcceEEEecCccc
Q psy3640         351 HT------GPVISLQFSSDRNMLITGS------------FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE  412 (616)
Q Consensus       351 ~~------~~v~~l~~~~~~~~l~~g~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (616)
                      ..      ..+..++|+|||+++++++            .++.+.+|+......             ...+.. ......
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~-~~~~~~  146 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE-------------AKPVRT-FPMPRQ  146 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG-------------BCCSEE-EECCSS
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee-------------eeEEEe-eeccCc
Confidence            32      2356789999999988775            466788888763211             111111 112234


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeEE
Q psy3640         413 ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGGAVELLQTF  491 (616)
Q Consensus       413 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~  491 (616)
                      +..+.+++++..+++   ++.+.+|++.+++.+..+..+ .....+.++|++..++... .++.+.+++..         
T Consensus       147 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  213 (346)
T d1jmxb_         147 VYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTI---------  213 (346)
T ss_dssp             CCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEE---------
T ss_pred             eEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeee---------
Confidence            455666777766654   356899999999988887644 3455667788877665443 33444444321         


Q ss_pred             eccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640         492 YGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       492 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~  571 (616)
                                  ..+.+....++++..++.+.+|+..+..........|...+..+.+++++.+++.+.. +.|.+||..
T Consensus       214 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~  280 (346)
T d1jmxb_         214 ------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLK  280 (346)
T ss_dssp             ------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETT
T ss_pred             ------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECC
Confidence                        1223344456666677889999999877777778889999999999999988887765 579999999


Q ss_pred             cCeeeeEeccCcccEEEEEEeeCCCEEEEeeCCCcEEEcccCCCC
Q psy3640         572 SGECIQVLKAHEDDVFSCGFNYNGDTIITASKDNTCCIWRSMNRD  616 (616)
Q Consensus       572 ~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~~e  616 (616)
                      +++.+..+. +...+.+++|+|||++|++++.||.|+|||+.+.+
T Consensus       281 ~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         281 QRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             TTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             CCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            999998876 34568999999999999999999999999998753

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.6e-21  Score=189.58  Aligned_cols=266  Identities=7%  Similarity=0.022  Sum_probs=202.9

Q ss_pred             CEEEEEECCCcEEEEECCCCcEEEEEecc--CCcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEeeCCCCc---
Q psy3640         200 TRCLTGSYDRTCKLWDIKSGHEICTYRGH--QNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGHQNV---  272 (616)
Q Consensus       200 ~~lasgs~dg~i~iwd~~~~~~~~~~~~h--~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~h~~~---  272 (616)
                      +++++++.|++|.|||+++++.+.++..+  ...+.+++|+|||+++  +++.++.|.+||+.+++.+..+..+...   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999999988754  4567899999999954  5678999999999999999888766443   


Q ss_pred             --EEEEEEeCCCCCEEEEEE------------CCCeEEEEeCCCcceeEEeeece--eeEEEcCCCCEEEEEeCCCcEEE
Q psy3640         273 --VYAVAFSEPYGDKILTGS------------FDKTLKLWASAKEECIQTYRGHS--AEVTFSPDQSTFCSCSMDHTARI  336 (616)
Q Consensus       273 --V~~l~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~l~~~~~dg~i~i  336 (616)
                        +..++|+ |+++.++++.            .+..+.+||..+++....+..+.  ..++++|+++++++++.  .+.+
T Consensus        82 ~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~  158 (337)
T d1pbyb_          82 KSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHV  158 (337)
T ss_dssp             ECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred             cceeeEEEc-CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence              3478898 8888888776            46788999999999888776543  46799999999998864  4788


Q ss_pred             EECCCCceeEEeecCCcCEEEEEEcCCCCEEE------------------------EEECCCcEEEEecccccCCccccc
Q psy3640         337 FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLI------------------------TGSFDSSIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       337 ~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~------------------------~g~~dg~i~iwd~~~~~~~~~~~~  392 (616)
                      ||..+++....+..+... ....+.|++..+.                        .+..++.+.+|+..          
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  227 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLE----------  227 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----------
T ss_pred             eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcC----------
Confidence            999999888877644322 1122223222111                        11112345556554          


Q ss_pred             ccccccCCc-ceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640         393 ESTYRASHK-PIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       393 ~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  471 (616)
                            ... .......+......+.+++++.+++.+  ++.+++||+.+++.+..+. +...+.+++|+|+|++|++++
T Consensus       228 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~  298 (337)
T d1pbyb_         228 ------TGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGG  298 (337)
T ss_dssp             ------TCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEES
T ss_pred             ------CCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEe
Confidence                  222 223445567778888899999988776  4789999999999998886 567789999999999999999


Q ss_pred             CCCcEEEEecCCceeee
Q psy3640         472 SDQTANLWTVGGAVELL  488 (616)
Q Consensus       472 ~dg~i~iwd~~~~~~~~  488 (616)
                      .++.|.+||..+.....
T Consensus       299 ~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         299 ALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             BSSEEEEEETTTCCEEE
T ss_pred             CCCcEEEEECCCCcEEE
Confidence            99999999998864443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=5.3e-19  Score=176.01  Aligned_cols=328  Identities=9%  Similarity=-0.049  Sum_probs=227.1

Q ss_pred             cccCCcceEEEEECCCCCEEEEEE-----CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EE----------
Q psy3640         183 LKSHLLPLTNITFDKFGTRCLTGS-----YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TG----------  246 (616)
Q Consensus       183 l~~h~~~i~~v~~s~~g~~lasgs-----~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~----------  246 (616)
                      ...|..++.+++++|||++++...     ..+.|.+||.++++.+.++..+..+  .++|+|||+.+ ++          
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~   93 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG   93 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccccc
Confidence            346889999999999999987652     3467999999999999998877655  79999999965 33          


Q ss_pred             ECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEE
Q psy3640         247 SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFC  326 (616)
Q Consensus       247 s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~  326 (616)
                      ..++.|.+||..+++.+..+..+......+... +  .                              .+.++++++.++
T Consensus        94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-~--~------------------------------~~~~s~dg~~~~  140 (373)
T d2madh_          94 KRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY-S--W------------------------------MNANTPNNADLL  140 (373)
T ss_pred             ccceEEEEEECCCCcEEEEEecCCcceeEeccC-C--C------------------------------cEEEEeCCCcEE
Confidence            245789999999998888877666555444332 1  1                              123455555444


Q ss_pred             EEe--CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEecccccCCcccccccccccCCcce
Q psy3640         327 SCS--MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNM-LITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPI  403 (616)
Q Consensus       327 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  403 (616)
                      ...  .++.+.+|+..+.+.....    ....++.++|+++. +++.+.|+.+.+|+...                ....
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~----------------~~~~  200 (373)
T d2madh_         141 FFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG----------------GAAG  200 (373)
T ss_pred             EEEEcCCCceEEeeccCCeEEEEe----ccceeEEEecCCCcEEEEEcCCCeEEEEEcCC----------------ceee
Confidence            332  3456778887776654433    34567888998865 46788899999999862                2222


Q ss_pred             EEEec------CccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE--EEeecCCCCEEEEEEcCCCCEEEEEeCCCc
Q psy3640         404 HILTG------HSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF--YTLKNHEDEVLDIAFDYSGSKLATASSDQT  475 (616)
Q Consensus       404 ~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~  475 (616)
                      .....      .........+.+++ .++..+.++.+.+|+..+....  .....+........+.|.+...+..+.|+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  279 (373)
T d2madh_         201 AGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             EEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC
Confidence            22211      11122334445444 4455667889999998877543  333344555666667776666666666654


Q ss_pred             EEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCE
Q psy3640         476 ANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKL  555 (616)
Q Consensus       476 i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~  555 (616)
                      ...+                          ....+..++....++.+.+||..++.. +..+ .+...+..++|+|||+.
T Consensus       280 ~~~~--------------------------~~~~~~~~~~~~~~~~v~~~d~~t~~~-~~~~-~~~~~~~~~a~spDG~~  331 (373)
T d2madh_         280 GIYL--------------------------LTSEQSAWKLHAAAKEVTSVTGLVGQT-SSQI-SLGHDVDAISVAQDGGP  331 (373)
T ss_pred             eEEE--------------------------ecCCCceEEeecCCCeEEEEECCCCcE-EEEe-cCCCCeeEEEECCCCCE
Confidence            3322                          233456677788889999999988643 3333 36678999999999984


Q ss_pred             --EEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeC
Q psy3640         556 --VLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN  594 (616)
Q Consensus       556 --l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~  594 (616)
                        +++++.|++|++||+.+++.+..+..+....+.+++.++
T Consensus       332 ~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         332 DLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             EEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence              467889999999999999999999988777778877654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=1.5e-17  Score=165.34  Aligned_cols=312  Identities=8%  Similarity=-0.102  Sum_probs=206.3

Q ss_pred             eccCCcEEEEEEcCCCCEEEE------ECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEe
Q psy3640         226 RGHQNVVYAVAFSEPYGCLTG------SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA  299 (616)
Q Consensus       226 ~~h~~~I~~l~fs~~~~lls~------s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd  299 (616)
                      ..+.+++..++++||++.+..      +..+.|.+||..+++.+..+..+..+  .++|+ |+++++++++.+.      
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~S-pDG~~l~va~~~~------   87 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAA-HSGSEFALASTSF------   87 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEc-CCCCEEEEEeecC------
Confidence            357889999999999995422      23467999999999999998876654  78999 8899988876532      


Q ss_pred             CCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCE-------EEEEEcCCCCEEEEEE-
Q psy3640         300 SAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPV-------ISLQFSSDRNMLITGS-  371 (616)
Q Consensus       300 ~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v-------~~l~~~~~~~~l~~g~-  371 (616)
                                             .....+..++.|.+||..+++.+..+..+....       ..+.|+++++.+++.. 
T Consensus        88 -----------------------~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~  144 (373)
T d2madh_          88 -----------------------SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF  144 (373)
T ss_pred             -----------------------CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEE
Confidence                                   223344556677777777777776665554433       3467788887665554 


Q ss_pred             -CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEE-EEEeCCCcEEEEeCCCCeEEEEee
Q psy3640         372 -FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMI-ASSSLDGTAKLWDVRTMCCFYTLK  449 (616)
Q Consensus       372 -~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~  449 (616)
                       .++.+.+|+..                .....    .+......+.++++++.+ ++.+.|+.+.+|+...+.......
T Consensus       145 ~~~~~~~~~~~~----------------~~~~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~  204 (373)
T d2madh_         145 AAGPAVGLVVQG----------------GSSDD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV  204 (373)
T ss_pred             cCCCceEEeecc----------------CCeEE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence             35677788765                22222    222335577888888754 678889999999999887766554


Q ss_pred             cCC------CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640         450 NHE------DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAK  523 (616)
Q Consensus       450 ~~~------~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  523 (616)
                      .+.      .......+++++. ++..+.++.+.+|+............  ...........+.|.+...+..+.++.  
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~--  279 (373)
T d2madh_         205 GAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPI--DALSGGRKADTWRPGGWQQVAYLKSSD--  279 (373)
T ss_pred             eeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEee--ccccCcEEeeeeccCcceeeEEecCCC--
Confidence            322      2234455666554 44556788999999876532211111  111111222333333333333322221  


Q ss_pred             EEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCCE--EEEe
Q psy3640         524 LWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDT--IITA  601 (616)
Q Consensus       524 vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~--l~t~  601 (616)
                                           ....+.+++..+++...++.+.+||..+++.+..+. +...+.+++|+|||+.  ++++
T Consensus       280 ---------------------~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~  337 (373)
T d2madh_         280 ---------------------GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             ---------------------eEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEe
Confidence                                 112233455566777788899999999999998886 4566899999999984  4688


Q ss_pred             eCCCcEEEcccCCCC
Q psy3640         602 SKDNTCCIWRSMNRD  616 (616)
Q Consensus       602 s~Dg~i~vW~~~~~e  616 (616)
                      +.|++|++||+.+.+
T Consensus       338 ~~d~~v~v~D~~tg~  352 (373)
T d2madh_         338 AGTEVLHIYDAGAGD  352 (373)
T ss_pred             CCCCeEEEEECCCCC
Confidence            999999999998753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=1.8e-19  Score=177.97  Aligned_cols=313  Identities=11%  Similarity=0.022  Sum_probs=192.8

Q ss_pred             ceEEEEECCCCCEEEEEE-----CCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EE----------ECCCcE
Q psy3640         189 PLTNITFDKFGTRCLTGS-----YDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TG----------SYDRTC  252 (616)
Q Consensus       189 ~i~~v~~s~~g~~lasgs-----~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~----------s~d~~I  252 (616)
                      |+.-.+.+|||+++++..     .+++|.+||..+++.+.++..+..+  .++|+||++.+ ++          ..++.|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            444556799999998764     3557999999999999998876655  69999999944 32          347899


Q ss_pred             EEEeCCCCceEEEeeCCCC-------cEEEEEEeCCCCCEEEEEE--CCCeEEEEeCCCcceeEEeeeceee--------
Q psy3640         253 KLWDIKSGHEICTYRGHQN-------VVYAVAFSEPYGDKILTGS--FDKTLKLWASAKEECIQTYRGHSAE--------  315 (616)
Q Consensus       253 ~iwd~~~~~~~~~~~~h~~-------~V~~l~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~--------  315 (616)
                      ++||..+++.+..+..+..       ....++|+ ++++.++.++  .+..+.+|+..+++.+..+..+...        
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD  159 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEe-cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCc
Confidence            9999999998887764432       23467898 8888887775  4578999999999888877654433        


Q ss_pred             --EEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccc
Q psy3640         316 --VTFSPDQSTFCSCS-MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       316 --v~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~  392 (616)
                        +.+++++..++... .++.+.+++......     .+...+....+.+++..++.++.++.+++|++....       
T Consensus       160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------  227 (355)
T d2bbkh_         160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGD-------  227 (355)
T ss_dssp             EEEEEETTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSS-------
T ss_pred             ceEEEcCCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEecCCCc-------
Confidence              24445544444332 223333333332221     233345556778888889999999999999986210       


Q ss_pred             ccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC
Q psy3640         393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS  472 (616)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~  472 (616)
                             ...+.....+........+.|.+                                ...+++++++..++....
T Consensus       228 -------~~~~~~~~~~~~~~~~~~~~p~~--------------------------------~~~~~~~~d~~~~~~~~~  268 (355)
T d2bbkh_         228 -------AKFLPAVEALTEAERADGWRPGG--------------------------------WQQVAYHRALDRIYLLVD  268 (355)
T ss_dssp             -------CEECCCEESSCHHHHHTTEEECS--------------------------------SSCEEEETTTTEEEEEEE
T ss_pred             -------EEEEeccCCcccceEeeeeeccc--------------------------------eEEEEEeCCCCeEEEEec
Confidence                   00000011111111111111111                                122444555554444332


Q ss_pred             CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640         473 DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT  552 (616)
Q Consensus       473 dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  552 (616)
                      ++....                                    .....+.|.+||..+. +.+..+. +...+.+++|+||
T Consensus       269 ~~~~~~------------------------------------~~~~~~~v~v~d~~t~-~~~~~~~-~~~~~~~~a~spD  310 (355)
T d2bbkh_         269 QRDEWR------------------------------------HKTASRFVVVLDAKTG-ERLAKFE-MGHEIDSINVSQD  310 (355)
T ss_dssp             ECCTTC------------------------------------TTSCEEEEEEEETTTC-CEEEEEE-EEEEECEEEECCS
T ss_pred             cCCcee------------------------------------ecCCCCeEEEEeCCCC-cEEEEec-CCCCEEEEEEcCC
Confidence            211000                                    0001124566666654 3333332 3355789999999


Q ss_pred             CC--EEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEee
Q psy3640         553 GK--LVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNY  593 (616)
Q Consensus       553 g~--~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~  593 (616)
                      |+  ++++++.|+.|++||.++++.+.++.++...-..+.+.+
T Consensus       311 G~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d  353 (355)
T d2bbkh_         311 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD  353 (355)
T ss_dssp             SSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCC
T ss_pred             CCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCC
Confidence            98  456677899999999999999999987655444554443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=9.1e-18  Score=163.86  Aligned_cols=277  Identities=11%  Similarity=0.136  Sum_probs=188.2

Q ss_pred             EEEEEeCCCcEEEEECCCCceeEEe--ecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCC
Q psy3640         324 TFCSCSMDHTARIFNTNSGQEMHTL--KAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       324 ~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                      .+++++.+++|++|++.+...+..+  ..|.+.+..++|+|||++|++++ .|+.|++|++....             ..
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~-------------~~   72 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-------------GA   72 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-------------CC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC-------------Cc
Confidence            3567778899999998765433322  35788999999999999986665 48999999986321             11


Q ss_pred             cceEEEecCccceeEEEEccCCCEEEEEeC-CCcEEEEeCCCCeEEEE--eecCCCCEEEEEEcCCCCEEEEEeCC-CcE
Q psy3640         401 KPIHILTGHSQEISNCLFNFSNSMIASSSL-DGTAKLWDVRTMCCFYT--LKNHEDEVLDIAFDYSGSKLATASSD-QTA  476 (616)
Q Consensus       401 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~~~~~~~l~~~~~d-g~i  476 (616)
                      ........+...+..++|+|+|+++++++. ++.+.+|+.........  ...+...+.++.++|+++++++++.+ ..+
T Consensus        73 ~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i  152 (333)
T d1ri6a_          73 LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRI  152 (333)
T ss_dssp             EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEE
T ss_pred             EEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccccccee
Confidence            112222334456778999999999998885 66889998776654433  34566778899999999988877744 568


Q ss_pred             EEEecCCceeeeeEEe--ccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceE---EeEEee------ccccCE
Q psy3640         477 NLWTVGGAVELLQTFY--GHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVE---LLQTFY------GHSNEV  544 (616)
Q Consensus       477 ~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~---~~~~~~------~h~~~v  544 (616)
                      .+|+............  ...........++|++++.+++... ..+...+|+......   ......      ......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (333)
T d1ri6a_         153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA  232 (333)
T ss_dssp             EEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCE
T ss_pred             eEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccc
Confidence            8999866433322111  1122223356789999999887665 456778887643221   111211      123456


Q ss_pred             EEEEEecCCCEEEEE-ECCCcEEEecCCcCeeeeEec---cCcccEEEEEEeeCCCEEEEee-CCCcEEEcccC
Q psy3640         545 SKVSFHPTGKLVLSG-SQDTTCRLWSTESGECIQVLK---AHEDDVFSCGFNYNGDTIITAS-KDNTCCIWRSM  613 (616)
Q Consensus       545 ~~l~~spdg~~l~s~-s~dg~i~iwd~~~~~~~~~~~---~h~~~V~~l~~s~~~~~l~t~s-~Dg~i~vW~~~  613 (616)
                      ..+++++++++++.+ ..++.+.+|++..........   .+...+.+++|+|||++|++++ .++.|++|++.
T Consensus       233 ~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         233 ADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            788999999977665 456789999887654433332   2335577899999999887765 46899999764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.9e-16  Score=154.36  Aligned_cols=277  Identities=11%  Similarity=0.160  Sum_probs=187.9

Q ss_pred             EEEEEECCCeEEEEeCCCcce---eEEee--eceeeEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEEe---ecCCcCE
Q psy3640         285 KILTGSFDKTLKLWASAKEEC---IQTYR--GHSAEVTFSPDQSTFCSCS-MDHTARIFNTNSGQEMHTL---KAHTGPV  355 (616)
Q Consensus       285 ~l~s~s~dg~i~iwd~~~~~~---~~~~~--~~~~~v~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~---~~~~~~v  355 (616)
                      .+++++.|++|++|++.....   ++.+.  +....++|+||+++|++++ .++.|.+|++........+   ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            457778999999999876533   33332  4456789999999996655 4799999999866433322   2344556


Q ss_pred             EEEEEcCCCCEEEEEEC-CCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC-Cc
Q psy3640         356 ISLQFSSDRNMLITGSF-DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD-GT  433 (616)
Q Consensus       356 ~~l~~~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~  433 (616)
                      ..++|+|||++|++++. ++.+.+|+....              ..........+...+.++.++|+++.+++++.+ ..
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~  151 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDG--------------LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR  151 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETT--------------EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccc--------------cceecccccCCCccceEEEeeecceeeeccccccce
Confidence            78999999999999885 668899987621              112233344566678889999999988888754 56


Q ss_pred             EEEEeCCCCeEEEE------eecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeee---EE---eccCCCeee
Q psy3640         434 AKLWDVRTMCCFYT------LKNHEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGGAVELLQ---TF---YGHSNEVSK  500 (616)
Q Consensus       434 i~iwd~~~~~~~~~------~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~---~~---~~~~~~~~~  500 (616)
                      +.+|+.........      ..........++|++++..++... ..+...+|+.........   ..   .........
T Consensus       152 i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (333)
T d1ri6a_         152 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW  231 (333)
T ss_dssp             EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred             eeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence            88998766432221      122445678899999998877665 456677887654322111   11   111223344


Q ss_pred             EEEEEEcCCCCEEEEEe-CCCcEEEEecCCceE--EeEEeeccccCEEEEEEecCCCEEEEEE-CCCcEEEe--cCCcCe
Q psy3640         501 VLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVE--LLQTFYGHSNEVSKVSFHPTGKLVLSGS-QDTTCRLW--STESGE  574 (616)
Q Consensus       501 i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~~h~~~v~~l~~spdg~~l~s~s-~dg~i~iw--d~~~~~  574 (616)
                      ...+++++++++++... .++.+.+|++.....  .......+...+..++|+|||++|++++ .++.|++|  |.++|+
T Consensus       232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             ceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            56789999999776654 577899998865432  2223334456678899999999887765 45889999  456675


Q ss_pred             e
Q psy3640         575 C  575 (616)
Q Consensus       575 ~  575 (616)
                      +
T Consensus       312 l  312 (333)
T d1ri6a_         312 L  312 (333)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=1.1e-16  Score=157.81  Aligned_cols=272  Identities=10%  Similarity=0.037  Sum_probs=186.4

Q ss_pred             EEcCCCCEEEEEe-----CCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEec
Q psy3640         317 TFSPDQSTFCSCS-----MDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS----------FDSSIVVWDI  381 (616)
Q Consensus       317 ~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~----------~dg~i~iwd~  381 (616)
                      +.+|+++.+++..     .++.+.+||..+++.+.++..+..+  .++|+|||++|++.+          .|+.|++||.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            4578999887764     3457999999999999988766554  799999999887643          4789999999


Q ss_pred             ccccCCcccccccccccCCcceEEEecCc-------cceeEEEEccCCCEEEEEe--CCCcEEEEeCCCCeEEEEeecCC
Q psy3640         382 QYQFGTRNAYAESTYRASHKPIHILTGHS-------QEISNCLFNFSNSMIASSS--LDGTAKLWDVRTMCCFYTLKNHE  452 (616)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~  452 (616)
                      .                ..........+.       .....++|+++++.+++++  .+..+.+|+..+++.+..+..+.
T Consensus        86 ~----------------t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (355)
T d2bbkh_          86 V----------------TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD  149 (355)
T ss_dssp             T----------------TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             C----------------CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence            7                444444443222       2235678999999888775  45679999999999888776543


Q ss_pred             CC-------EEEEEEcCCCCEEEEEe-CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEE
Q psy3640         453 DE-------VLDIAFDYSGSKLATAS-SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKL  524 (616)
Q Consensus       453 ~~-------v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  524 (616)
                      ..       ...+.+++++..++... .++.+.+++....         .......+....+.+++..++.++.++.+++
T Consensus       150 ~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  220 (355)
T d2bbkh_         150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVF---------HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQ  220 (355)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCC---------SCTTSCBCSCCEEETTTTEEEEEBTTSEEEE
T ss_pred             cceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccc---------cceecceeeeccccCCCCeEEEecCCCeEEE
Confidence            22       22344555554444332 2223333333221         1111112334567888889999999999999


Q ss_pred             EecCCceEE-eEEeeccc----------cCEEEEEEecCCCEEEEEECC----------CcEEEecCCcCeeeeEeccCc
Q psy3640         525 WTVGGAVEL-LQTFYGHS----------NEVSKVSFHPTGKLVLSGSQD----------TTCRLWSTESGECIQVLKAHE  583 (616)
Q Consensus       525 wd~~~~~~~-~~~~~~h~----------~~v~~l~~spdg~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~h~  583 (616)
                      |+...+... +.....+.          .....++++|++..++....+          ..|.+||..+++.+..+..+ 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-  299 (355)
T d2bbkh_         221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-  299 (355)
T ss_dssp             EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-
T ss_pred             EecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-
Confidence            999765322 22222221          223458899999988776543          36999999999999888743 


Q ss_pred             ccEEEEEEeeCCC--EEEEeeCCCcEEEcccCCCC
Q psy3640         584 DDVFSCGFNYNGD--TIITASKDNTCCIWRSMNRD  616 (616)
Q Consensus       584 ~~V~~l~~s~~~~--~l~t~s~Dg~i~vW~~~~~e  616 (616)
                      ..+.+++|+|||+  ++++++.|+.|++||+.+.+
T Consensus       300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            5588999999997  45677789999999998753

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.69  E-value=3.8e-16  Score=160.36  Aligned_cols=370  Identities=9%  Similarity=0.042  Sum_probs=213.0

Q ss_pred             EEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEec-----cCCcEEEEEEcCCCCEE-EEE---------CCCcEEEEe
Q psy3640         192 NITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRG-----HQNVVYAVAFSEPYGCL-TGS---------YDRTCKLWD  256 (616)
Q Consensus       192 ~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~-----h~~~I~~l~fs~~~~ll-s~s---------~d~~I~iwd  256 (616)
                      .+.|.++++++.  ..|+.+.+||+.+++....+..     |...|.++.||||++.| .++         .++.+.+||
T Consensus        21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            477999998776  4578899999999998776654     45789999999999955 332         257889999


Q ss_pred             CCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee---------------------ceee
Q psy3640         257 IKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG---------------------HSAE  315 (616)
Q Consensus       257 ~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------------------~~~~  315 (616)
                      +.+++. ..+..|...+..+.|+ |+|+.+|.. .++.+.+|+..+++..+....                     ....
T Consensus        99 ~~~~~~-~~l~~~~~~~~~~~~S-PDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          99 LNKRQL-ITEERIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             TTTTEE-CCSSCCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             CCCCcc-cccccCCccccccccc-cCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            999875 5678899999999999 899999986 467899999998876554321                     1234


Q ss_pred             EEEcCCCCEEEEEeCCCc-EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640         316 VTFSPDQSTFCSCSMDHT-ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       316 v~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                      +.|+|||+.++....|.. +..|.+.....   ..........+.+...+.    ...+..+.+|++.............
T Consensus       176 ~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~  248 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSD---ESLQYPKTVRVPYPKAGA----VNPTVKFFVVNTDSLSSVTNATSIQ  248 (470)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEEEEECCS---TTCSSCEEEEEECCBTTS----CCCEEEEEEEEGGGCCSSSCCCEEE
T ss_pred             cEECCCCCccceeEecCCcCceEEEEeecc---CCCCCCeeeeeccccccc----cCCcceEEEEECCCcceeeeccccc
Confidence            579999999998876533 44333210000   000111122222222221    1123457788876432211100000


Q ss_pred             ccccCCcceEEEecCccceeEEEEccCCCEEEEEe-CCC-----cEEEEeCCCCeEEEEeec------CCC-----CEEE
Q psy3640         395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS-LDG-----TAKLWDVRTMCCFYTLKN------HED-----EVLD  457 (616)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg-----~i~iwd~~~~~~~~~~~~------~~~-----~v~~  457 (616)
                           .............+..+.|.+++..++... ..+     .+..+|..++........      ...     .-..
T Consensus       249 -----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~  323 (470)
T d2bgra1         249 -----ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE  323 (470)
T ss_dssp             -----ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred             -----cCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCC
Confidence                 000000112233456778888887665543 222     234455666654332210      011     0112


Q ss_pred             EEEcCC--CCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEE-EEEeCCC----cEEEE--ecC
Q psy3640         458 IAFDYS--GSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKL-ATASSDQ----TAKLW--TVG  528 (616)
Q Consensus       458 l~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg----~i~vw--d~~  528 (616)
                      ..+.++  +..++.+..+|..++|...........+......   +..+ ++++++.+ +++..++    .-.+|  ++.
T Consensus       324 ~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~---v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~  399 (470)
T d2bgra1         324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE---VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLS  399 (470)
T ss_dssp             CEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSC---EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred             ceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCee---EEEE-EEECCCEEEEEEecCCCCcceEEEEEEECC
Confidence            233443  3346677788877776543322333333222322   3333 33334443 3333322    22344  444


Q ss_pred             CceE--Ee-EEeeccccCEEEEEEecCCCEEEE---EECCCcEEEecCCcCeeeeEeccC
Q psy3640         529 GAVE--LL-QTFYGHSNEVSKVSFHPTGKLVLS---GSQDTTCRLWSTESGECIQVLKAH  582 (616)
Q Consensus       529 ~~~~--~~-~~~~~h~~~v~~l~~spdg~~l~s---~s~dg~i~iwd~~~~~~~~~~~~h  582 (616)
                      ....  ++ ..+.+|...+..++|||||++++.   +...-.+.+|+..+++.+..+..+
T Consensus       400 g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n  459 (470)
T d2bgra1         400 DYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN  459 (470)
T ss_dssp             CTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred             CCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence            3222  11 123467888999999999998773   334456899999999999988653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.63  E-value=1.5e-15  Score=155.90  Aligned_cols=355  Identities=9%  Similarity=0.038  Sum_probs=202.8

Q ss_pred             EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC-----CCCcEEEEEEeCCCCCEEEEEEC---------CCeEEEE
Q psy3640         233 YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG-----HQNVVYAVAFSEPYGDKILTGSF---------DKTLKLW  298 (616)
Q Consensus       233 ~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~-----h~~~V~~l~~~~~~~~~l~s~s~---------dg~i~iw  298 (616)
                      ..+.|.+++.++. ..++.+.+||+.+++....+..     |...|.++.|+ ||+++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S-pDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-PDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC-TTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC-CCCCEEEEEECCcceeeeccCceEEEE
Confidence            3577999998775 4578999999999998766654     45789999999 89999998854         5678899


Q ss_pred             eCCCcceeEE--eeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecC------------------CcCEEEE
Q psy3640         299 ASAKEECIQT--YRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAH------------------TGPVISL  358 (616)
Q Consensus       299 d~~~~~~~~~--~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------~~~v~~l  358 (616)
                      |+.+++....  .......+.|+|||+.+|.. .++.+.+|+..+++.......+                  .+....+
T Consensus        98 d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~  176 (470)
T d2bgra1          98 DLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL  176 (470)
T ss_dssp             ETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred             ECCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcccc
Confidence            9998875432  12233456899999999986 4678999999988766543221                  2234568


Q ss_pred             EEcCCCCEEEEEECCCc-EEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEE
Q psy3640         359 QFSSDRNMLITGSFDSS-IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLW  437 (616)
Q Consensus       359 ~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  437 (616)
                      .|+|||+.|+....|.+ +..|++.......          ...         .....+.+...+.    ...+..+.+|
T Consensus       177 ~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~----------~~~---------~~~~~~~~~~~g~----~~~~~~~~v~  233 (470)
T d2bgra1         177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDES----------LQY---------PKTVRVPYPKAGA----VNPTVKFFVV  233 (470)
T ss_dssp             EECTTSSEEEEEEEECTTCCEEEEEECCSTT----------CSS---------CEEEEEECCBTTS----CCCEEEEEEE
T ss_pred             EECCCCCccceeEecCCcCceEEEEeeccCC----------CCC---------Ceeeeeccccccc----cCCcceEEEE
Confidence            89999999999876544 6655543211000          000         0011111111111    1122356778


Q ss_pred             eCCCCeEEEEe-----------ecCCCCEEEEEEcCCCCEEEEEe-CCC---cEEEEec--CCceeeee-----EEeccC
Q psy3640         438 DVRTMCCFYTL-----------KNHEDEVLDIAFDYSGSKLATAS-SDQ---TANLWTV--GGAVELLQ-----TFYGHS  495 (616)
Q Consensus       438 d~~~~~~~~~~-----------~~~~~~v~~l~~~~~~~~l~~~~-~dg---~i~iwd~--~~~~~~~~-----~~~~~~  495 (616)
                      ++..+......           ......+..+.|.+++..++... ..+   .+.+++.  .++.....     ......
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~  313 (470)
T d2bgra1         234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT  313 (470)
T ss_dssp             EGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred             ECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeecc
Confidence            77655332211           11233467788888887655432 222   2334433  33221110     000000


Q ss_pred             C--CeeeEEEEEEcCCC--CEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEE-EEEECCC----cEE
Q psy3640         496 N--EVSKVLDIAFDYSG--SKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLV-LSGSQDT----TCR  566 (616)
Q Consensus       496 ~--~~~~i~~~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l-~s~s~dg----~i~  566 (616)
                      .  ....-....+.+++  .+++....+|..++|...........+..+...|..+ ++++++.+ +++..++    .-.
T Consensus       314 ~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~  392 (470)
T d2bgra1         314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRN  392 (470)
T ss_dssp             SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBE
T ss_pred             ceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEE
Confidence            0  00000112344443  3456677788766665433333444555556677776 55555554 3443332    113


Q ss_pred             Ee--cCCcCeeee----EeccCcccEEEEEEeeCCCEEEE---eeCCCcEEEcccCC
Q psy3640         567 LW--STESGECIQ----VLKAHEDDVFSCGFNYNGDTIIT---ASKDNTCCIWRSMN  614 (616)
Q Consensus       567 iw--d~~~~~~~~----~~~~h~~~V~~l~~s~~~~~l~t---~s~Dg~i~vW~~~~  614 (616)
                      ||  ++..+....    .+.+|...+.+++|||||++++.   +...-.+.+|+..+
T Consensus       393 ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~  449 (470)
T d2bgra1         393 LYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN  449 (470)
T ss_dssp             EEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred             EEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCC
Confidence            44  333333332    24468888999999999998772   33334577777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=7.9e-15  Score=145.13  Aligned_cols=293  Identities=9%  Similarity=-0.077  Sum_probs=191.6

Q ss_pred             cCCcceEEEEECCCCCEEEE---EECCCc--EEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE-EE----------EC
Q psy3640         185 SHLLPLTNITFDKFGTRCLT---GSYDRT--CKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL-TG----------SY  248 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~las---gs~dg~--i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll-s~----------s~  248 (616)
                      .+.++...++..++++....   ...+|+  +.+||..+++.+..+.++..+  .++|+||++.+ ++          +.
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~   94 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR   94 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence            45666667778889886432   334444  777799999999998877766  58999999955 32          23


Q ss_pred             CCcEEEEeCCCCceEEEeeCCCC-------cEEEEEEeCCCCCEEEEEE-CCCeEEEEeCCCcceeEEeeeceeeEEEcC
Q psy3640         249 DRTCKLWDIKSGHEICTYRGHQN-------VVYAVAFSEPYGDKILTGS-FDKTLKLWASAKEECIQTYRGHSAEVTFSP  320 (616)
Q Consensus       249 d~~I~iwd~~~~~~~~~~~~h~~-------~V~~l~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  320 (616)
                      |+.|.+||..+++++..+..+..       ....++|+ +++++++++. .++.+.+||+.+++....+..+........
T Consensus        95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~  173 (368)
T d1mdah_          95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPG  173 (368)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEE
T ss_pred             CCeEEEEECCCCcEeeeecCCccceecccCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccC
Confidence            67899999999999888764432       22468899 8898888776 579999999999998888766544333333


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCceeEEe------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCccccccc
Q psy3640         321 DQSTFCSCSMDHTARIFNTNSGQEMHTL------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAES  394 (616)
Q Consensus       321 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~  394 (616)
                      ....++..+.||.+..+++.........      ..+...+....+.+++..+.+.  .+.+.+++..............
T Consensus       174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~  251 (368)
T d1mdah_         174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDG  251 (368)
T ss_dssp             ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCS
T ss_pred             CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeeccc
Confidence            4456666777888888877654432221      2234445567777777655443  4556666654221110000000


Q ss_pred             ccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC---------CcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC
Q psy3640         395 TYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD---------GTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS  465 (616)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  465 (616)
                          .................+++++++..++....+         ..+.+||..+++.+..+. ....+.+++|+|||+
T Consensus       252 ----~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~  326 (368)
T d1mdah_         252 ----NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGA  326 (368)
T ss_dssp             ----SCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSS
T ss_pred             ----ccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCC
Confidence                000000000011123457788888877665432         358999999999888776 345788999999997


Q ss_pred             E--EEEEeCCCcEEEEecCCceee
Q psy3640         466 K--LATASSDQTANLWTVGGAVEL  487 (616)
Q Consensus       466 ~--l~~~~~dg~i~iwd~~~~~~~  487 (616)
                      .  ++++..++.|++||..+++..
T Consensus       327 ~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         327 SDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSSCEEE
T ss_pred             EEEEEEeCCCCeEEEEECCCCCEE
Confidence            3  456667899999999887543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.59  E-value=2e-16  Score=155.65  Aligned_cols=328  Identities=9%  Similarity=-0.001  Sum_probs=211.7

Q ss_pred             EEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCC
Q psy3640         202 CLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEP  281 (616)
Q Consensus       202 lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~  281 (616)
                      +++|+.+|.|+||++.+++.++++.         .|+|++....+..+.+.+++.  ++........|........+. +
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~Ip---------Vfspd~~~g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gt-p   81 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIP---------VFNVDSATGWGITNESKEILG--GDQQYLNGDCHHPHISMTDGR-Y   81 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEEC---------SSSBCTTTCTTTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTE-E
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEE---------eEcCCCCEEEEECCccceEEe--cccccccCcccCCCcceeccc-C
Confidence            5678889999999999999998875         267776543333322222221  111111123344455555556 7


Q ss_pred             CCCEEEEE-ECCCeEEEEeCCCcceeEEeee----ceeeEEEcCCCCE--EEEEeCCC-----------------cEEEE
Q psy3640         282 YGDKILTG-SFDKTLKLWASAKEECIQTYRG----HSAEVTFSPDQST--FCSCSMDH-----------------TARIF  337 (616)
Q Consensus       282 ~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~--l~~~~~dg-----------------~i~i~  337 (616)
                      ||+++++. ..+.+|.++|+.+++....+..    ....++++|+++.  ++..+.+.                 .+..+
T Consensus        82 DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          82 DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence            78888655 4688999999999988876653    2345789999884  44444332                 23558


Q ss_pred             ECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCc-EEEEecccccCCcccccccccccCCcceEEEecCccceeEE
Q psy3640         338 NTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSS-IVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNC  416 (616)
Q Consensus       338 d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  416 (616)
                      |..+.+...++... +....+.++|+|+++++++.+.. +..++..                ............ .-..+
T Consensus       162 D~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~----------------t~~~~d~i~v~n-~p~~~  223 (441)
T d1qnia2         162 DAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGT----------------MRNDRDWVVVFN-VERIA  223 (441)
T ss_dssp             ETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHH----------------TCSSBCEEEEEE-HHHHH
T ss_pred             cCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEecc----------------CcceEEEEEeCC-ccceE
Confidence            88888887777654 45688999999999998887642 2222222                111111111110 11223


Q ss_pred             EEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEecCCceee-------e
Q psy3640         417 LFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLAT-ASSDQTANLWTVGGAVEL-------L  488 (616)
Q Consensus       417 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~-------~  488 (616)
                      .+.++|+++..+ .++.+.+++......+..+.... ....+.++|||+++++ +..++++.+||+.+....       .
T Consensus       224 ~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         224 AAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             EEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence            456788877654 35677888777766777776544 4678999999998754 567899999998653211       1


Q ss_pred             eEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCC---------ceEEeEEe-----eccccCEEEEEEecCCC
Q psy3640         489 QTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGG---------AVELLQTF-----YGHSNEVSKVSFHPTGK  554 (616)
Q Consensus       489 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~-----~~h~~~v~~l~~spdg~  554 (616)
                      ..+.......-.....+|+++|..+.+...|..|..|++..         ....+..+     .+|...+.+.+++|||+
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            12222222223345678999999999999999999999731         12344444     46777777778999999


Q ss_pred             EEEEEEC
Q psy3640         555 LVLSGSQ  561 (616)
Q Consensus       555 ~l~s~s~  561 (616)
                      +|++++.
T Consensus       382 ~l~s~~k  388 (441)
T d1qnia2         382 WLVVLSK  388 (441)
T ss_dssp             EEEEEES
T ss_pred             EEEecCc
Confidence            9999953

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.58  E-value=4e-14  Score=139.97  Aligned_cols=276  Identities=8%  Similarity=-0.069  Sum_probs=178.3

Q ss_pred             EEEcCCCCEEEE---EeCCC--cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEe
Q psy3640         316 VTFSPDQSTFCS---CSMDH--TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS----------FDSSIVVWD  380 (616)
Q Consensus       316 v~~~~~~~~l~~---~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~----------~dg~i~iwd  380 (616)
                      ++..++++....   ...+|  .+.++|..+++.+..+..+..+  .++|+|||+.+++.+          .|+.|.+||
T Consensus        25 ~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D  102 (368)
T d1mdah_          25 HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD  102 (368)
T ss_dssp             CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEEC
T ss_pred             cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEE
Confidence            345667765432   23344  4777799999999888877665  589999999888765          367799999


Q ss_pred             cccccCCcccccccccccCCcceEEEecCcc-------ceeEEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEEEeecCC
Q psy3640         381 IQYQFGTRNAYAESTYRASHKPIHILTGHSQ-------EISNCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFYTLKNHE  452 (616)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  452 (616)
                      ..                ..++...+..+..       ....++|+|||++++++. .++.+.+||+.+++....+..+.
T Consensus       103 ~~----------------t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_         103 PV----------------TFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             TT----------------TCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS
T ss_pred             CC----------------CCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccC
Confidence            87                5555555543322       234689999999998876 56899999999999988887654


Q ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEec--cCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc
Q psy3640         453 DEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYG--HSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA  530 (616)
Q Consensus       453 ~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~  530 (616)
                      .....   ......++..+.||.+.++++............  ............+.+++..+...  .+.+.+++....
T Consensus       167 ~~~~~---~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~  241 (368)
T d1mdah_         167 CFHIH---PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAA  241 (368)
T ss_dssp             CCCCE---EEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSS
T ss_pred             cceEc---cCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCC
Confidence            43211   112345666677788877777654332211111  11111222345666666655443  445555555432


Q ss_pred             eEEeE-Eeecc----------ccCEEEEEEecCCCEEEEEECC---------CcEEEecCCcCeeeeEeccCcccEEEEE
Q psy3640         531 VELLQ-TFYGH----------SNEVSKVSFHPTGKLVLSGSQD---------TTCRLWSTESGECIQVLKAHEDDVFSCG  590 (616)
Q Consensus       531 ~~~~~-~~~~h----------~~~v~~l~~spdg~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~h~~~V~~l~  590 (616)
                      ..... ....+          ......++++|++..++....+         ..|.+||..+++.+..+.. ...+.+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a  320 (368)
T d1mdah_         242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAII  320 (368)
T ss_dssp             CCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEE
T ss_pred             ceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEE
Confidence            22111 11111          1123457889998877665332         3589999999999988764 45688999


Q ss_pred             EeeCCC--EEEEeeCCCcEEEcccCCC
Q psy3640         591 FNYNGD--TIITASKDNTCCIWRSMNR  615 (616)
Q Consensus       591 ~s~~~~--~l~t~s~Dg~i~vW~~~~~  615 (616)
                      |+|||+  +++++..|+.|++||..+.
T Consensus       321 ~spDG~~~ly~s~~~~~~v~v~D~~tg  347 (368)
T d1mdah_         321 AAQDGASDNYANSAGTEVLDIYDAASD  347 (368)
T ss_dssp             ECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred             ECCCCCEEEEEEeCCCCeEEEEECCCC
Confidence            999997  3467778999999998764

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.46  E-value=3.2e-13  Score=132.54  Aligned_cols=287  Identities=12%  Similarity=0.080  Sum_probs=180.4

Q ss_pred             EEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCC
Q psy3640         285 KILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDR  364 (616)
Q Consensus       285 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~  364 (616)
                      .+++++.+|.|++|++.+++.++++.-      |+|++... .|..+.+..++.  ++.....-..|.........+|||
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpV------fspd~~~g-~g~~~es~~vl~--~~~~~~~gd~hhP~~s~t~gtpDG   83 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPV------FNVDSATG-WGITNESKEILG--GDQQYLNGDCHHPHISMTDGRYDG   83 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECS------SSBCTTTC-TTTSHHHHHHHC--SSSCCSCCCBCCCEEEEETTEEEE
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEe------EcCCCCEE-EEECCccceEEe--cccccccCcccCCCcceecccCCC
Confidence            367778899999999999998887753      56665432 111111111110  011111112344444555567899


Q ss_pred             CEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEe-cCccceeEEEEccCCC--EEEEEeCCC--------
Q psy3640         365 NMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT-GHSQEISNCLFNFSNS--MIASSSLDG--------  432 (616)
Q Consensus       365 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~--~l~~~~~dg--------  432 (616)
                      ++|++.. .+++|.++|+.                ..+....+. ........++|+|+++  +++..+.+.        
T Consensus        84 r~lfV~d~~~~rVavIDl~----------------t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          84 KYLFINDKANTRVARIRLD----------------IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             EEEEEEETTTTEEEEEETT----------------TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             CEEEEEcCCCCEEEEEECC----------------CCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            9886664 67899999997                555555543 3566788899999988  455444332        


Q ss_pred             ---------cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC-----------------------------
Q psy3640         433 ---------TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ-----------------------------  474 (616)
Q Consensus       433 ---------~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg-----------------------------  474 (616)
                               .+..+|..+.+...++... +....++++|+|+++++++.+.                             
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                     2355888888877776643 4578899999999998887542                             


Q ss_pred             ------------cEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE-EeCCCcEEEEecCCceEE--------
Q psy3640         475 ------------TANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT-ASSDQTAKLWTVGGAVEL--------  533 (616)
Q Consensus       475 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~dg~i~vwd~~~~~~~--------  533 (616)
                                  .+.+++.... .....+.....    ...+.++|||+++++ +..+++|.|||+....+.        
T Consensus       227 ~dGk~~~v~~~~v~vvd~~~~~-~v~~~IPvgks----PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~  301 (441)
T d1qnia2         227 KAGNFKTIGDSKVPVVDGRGES-EFTRYIPVPKN----PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR  301 (441)
T ss_dssp             HTTCCBCCTTCCCCEEECSSSC-SSEEEECCBSS----CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG
T ss_pred             cCCCEEEeCCCCcEEEEcccCC-ceEEEEeCCCC----ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc
Confidence                        1122221111 11222222111    245899999998765 567999999998542111        


Q ss_pred             --eEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC----------eeeeEe-----ccCcccEEEEEEeeCCC
Q psy3640         534 --LQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG----------ECIQVL-----KAHEDDVFSCGFNYNGD  596 (616)
Q Consensus       534 --~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~----------~~~~~~-----~~h~~~V~~l~~s~~~~  596 (616)
                        +.......-.....+|+++|..+.+.+.|..|..|++...          ..+..+     .+|...+.+.+++|||+
T Consensus       302 ~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         302 DTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             eEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence              0000111122455689999988888899999999997521          233444     46766667778999999


Q ss_pred             EEEEee
Q psy3640         597 TIITAS  602 (616)
Q Consensus       597 ~l~t~s  602 (616)
                      +|++++
T Consensus       382 ~l~s~~  387 (441)
T d1qnia2         382 WLVVLS  387 (441)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999994

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.18  E-value=3.5e-09  Score=97.94  Aligned_cols=236  Identities=8%  Similarity=0.050  Sum_probs=155.2

Q ss_pred             CEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC
Q psy3640         354 PVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG  432 (616)
Q Consensus       354 ~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  432 (616)
                      ...+++++++|+..++.. ..+.+..++...                ................+++++++.++++....+
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~----------------~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~   78 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS----------------TGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNR   78 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC--------------------CEEECCCCSCCSCCCEEECTTCCEEEEETTTE
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCC----------------ceEEEeccCCccCceEEEEcCCCCEEEeeeeec
Confidence            458999999999766654 456777776541                111111112223456788999999888877777


Q ss_pred             cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCE
Q psy3640         433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSK  512 (616)
Q Consensus       433 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  512 (616)
                      .+++++..+...+.... ......+++++++++++++-..+..+..++.............    ......++++++++.
T Consensus        79 ~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~~  153 (260)
T d1rwia_          79 VVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG----LNDPDGVAVDNSGNV  153 (260)
T ss_dssp             EEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS----CCSCCEEEECTTCCE
T ss_pred             eeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeeecc----cCCcceeeecCCCCE
Confidence            77777666555443332 2356789999999988887766777777776554322221111    122346899999998


Q ss_pred             EEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEe
Q psy3640         513 LATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFN  592 (616)
Q Consensus       513 l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  592 (616)
                      +++...++.|..++........ ...........+++.++|+++++....+.|..++.............-.....|+++
T Consensus       154 ~v~~~~~~~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d  232 (260)
T d1rwia_         154 YVTDTDNNRVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD  232 (260)
T ss_dssp             EEEEGGGTEEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEEC
T ss_pred             eeeccccccccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEe
Confidence            8888889999999987643322 222444567899999999988888788888888865443222222233457899999


Q ss_pred             eCCCEEEEeeCCCcEEEcc
Q psy3640         593 YNGDTIITASKDNTCCIWR  611 (616)
Q Consensus       593 ~~~~~l~t~s~Dg~i~vW~  611 (616)
                      ++|.++++-..+++|+..+
T Consensus       233 ~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         233 SDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEe
Confidence            9999888767777655443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=1.3e-08  Score=99.18  Aligned_cols=273  Identities=8%  Similarity=-0.012  Sum_probs=154.1

Q ss_pred             EEEEeC--CCcEEEE--ECCCCcee--EEe-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccc
Q psy3640         325 FCSCSM--DHTARIF--NTNSGQEM--HTL-KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYR  397 (616)
Q Consensus       325 l~~~~~--dg~i~i~--d~~~~~~~--~~~-~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~  397 (616)
                      |++|+.  .+.|..+  |.++++..  ... ......+..|+++|+++.|.+.. .+.+..|.+...             
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~-~~~~~~~~i~~~-------------   70 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAA-MKKWSSFAVKSP-------------   70 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEE-BTEEEEEEEEET-------------
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEe-CCcEEEEEEeCC-------------
Confidence            455543  4456554  55555432  222 22344567799999999998876 456888877531             


Q ss_pred             cCCcceEE-EecCccceeEEEEccCCCEEEEEe---CCCcEEEEeCCC-------------Ce---EEEE-eecCCCCEE
Q psy3640         398 ASHKPIHI-LTGHSQEISNCLFNFSNSMIASSS---LDGTAKLWDVRT-------------MC---CFYT-LKNHEDEVL  456 (616)
Q Consensus       398 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~-------------~~---~~~~-~~~~~~~v~  456 (616)
                        ...... ..........+.++++++.+....   ..+.+..+.+..             +.   .... -......+.
T Consensus        71 --~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h  148 (365)
T d1jofa_          71 --TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH  148 (365)
T ss_dssp             --TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred             --CCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce
Confidence              111111 111122334555666666432222   124444433211             11   1111 112234578


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecCCceee--eeEEeccCCCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceE
Q psy3640         457 DIAFDYSGSKLATASS-DQTANLWTVGGAVEL--LQTFYGHSNEVSKVLDIAFDYSGSKLATAS-SDQTAKLWTVGGAVE  532 (616)
Q Consensus       457 ~l~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~  532 (616)
                      +++|+|+|+++++++. ...|.+|+.......  ....... ........++|+|+++++++.. .++.|.+|++.....
T Consensus       149 ~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~-~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~  227 (365)
T d1jofa_         149 GMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAP-DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH  227 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS-STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeec-CCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence            9999999999888764 347888876543222  2222222 2234567899999999886665 578999999865321


Q ss_pred             -Ee---EEee--------------ccccCEEEEEEecCCCEEEEEEC------CCcEEEecCCcCeeeeE------eccC
Q psy3640         533 -LL---QTFY--------------GHSNEVSKVSFHPTGKLVLSGSQ------DTTCRLWSTESGECIQV------LKAH  582 (616)
Q Consensus       533 -~~---~~~~--------------~h~~~v~~l~~spdg~~l~s~s~------dg~i~iwd~~~~~~~~~------~~~h  582 (616)
                       ..   ....              .+......+.++|||++|+++..      .+.|..|++.....+..      ....
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~  307 (365)
T d1jofa_         228 MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS  307 (365)
T ss_dssp             CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC
T ss_pred             eEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcC
Confidence             11   1111              11223567899999999988642      12377777654322211      1112


Q ss_pred             cccEEEEEEee-CCCEEEEe-eCCCcEEEcccCC
Q psy3640         583 EDDVFSCGFNY-NGDTIITA-SKDNTCCIWRSMN  614 (616)
Q Consensus       583 ~~~V~~l~~s~-~~~~l~t~-s~Dg~i~vW~~~~  614 (616)
                      ......++++| +|++|+++ ..++.|.+|++..
T Consensus       308 G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         308 GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence            23456788998 78977666 5679999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.14  E-value=3e-08  Score=94.11  Aligned_cols=238  Identities=13%  Similarity=0.145  Sum_probs=152.1

Q ss_pred             CEEEEEEcCCCCEEEEEEC-------CCcEEEEecccccCCcccccccccccCCcceEEEec----CccceeEEEEccCC
Q psy3640         354 PVISLQFSSDRNMLITGSF-------DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG----HSQEISNCLFNFSN  422 (616)
Q Consensus       354 ~v~~l~~~~~~~~l~~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~  422 (616)
                      ....++|.++|++.++...       +|+|..||...                .........    ....-..+++.+++
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~----------------~~~~~~~~~~~~~~~g~P~Gl~~~~dg   82 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------GKKTVICKPEVNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------CCEEEEECCEETTEECCEEEEEECSSS
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCC----------------CcEEEEECCccccCCCcceeEEEeCCC
Confidence            3467899999997776432       35677787652                221111111    11234679999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCeEEEEeecCCC----CEEEEEEcCCCCEEEEEeC---------------CCcEEEEecCC
Q psy3640         423 SMIASSSLDGTAKLWDVRTMCCFYTLKNHED----EVLDIAFDYSGSKLATASS---------------DQTANLWTVGG  483 (616)
Q Consensus       423 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~l~~~~~~~~l~~~~~---------------dg~i~iwd~~~  483 (616)
                      +.++++...+.+..++..............+    ..+.++++++|.+.++-..               .|.+..++...
T Consensus        83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg  162 (314)
T d1pjxa_          83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG  162 (314)
T ss_dssp             SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS
T ss_pred             CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC
Confidence            9888888777888999776543222121111    3578999999988776432               23344444333


Q ss_pred             ceeeeeEEeccCCCeeeEEEEEEcCCCC-----EEEEEeCCCcEEEEecCCceEEe-----EEeec-cccCEEEEEEecC
Q psy3640         484 AVELLQTFYGHSNEVSKVLDIAFDYSGS-----KLATASSDQTAKLWTVGGAVELL-----QTFYG-HSNEVSKVSFHPT  552 (616)
Q Consensus       484 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~-----~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~-h~~~v~~l~~spd  552 (616)
                      .  .......    ...-..++|+|++.     ++++-+..+.|..|++.......     ..+.+ +......+++.++
T Consensus       163 ~--~~~~~~~----~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~  236 (314)
T d1pjxa_         163 Q--MIQVDTA----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED  236 (314)
T ss_dssp             C--EEEEEEE----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred             c--eeEeeCC----cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence            2  1111111    11124678888765     44455668889998875432221     11111 2234568999999


Q ss_pred             CCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEeeCCC-EEEEeeCCCcEEEcccC
Q psy3640         553 GKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFNYNGD-TIITASKDNTCCIWRSM  613 (616)
Q Consensus       553 g~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~t~s~Dg~i~vW~~~  613 (616)
                      |++.++....+.|.+||.+.++.+..+..+....++++|.||++ +.+|.+.+|.|...++.
T Consensus       237 GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         237 NNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            99888888889999999998888887877767789999999987 45666777877776654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=9.5e-08  Score=89.05  Aligned_cols=236  Identities=12%  Similarity=0.213  Sum_probs=159.6

Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEec------CccceeEEEEccCC-CEEE
Q psy3640         354 PVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG------HSQEISNCLFNFSN-SMIA  426 (616)
Q Consensus       354 ~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~-~~l~  426 (616)
                      ....++++++++.+++-..++.|++||..                 ...+..+..      .......+++..+. ..++
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-----------------G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~   86 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-----------------GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIV   86 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-----------------SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-----------------CCEEEEecccCCCcccccccccccccccccccce
Confidence            35899999999988887778899999864                 222222211      11122334444443 3333


Q ss_pred             EE-eCCCcEEEEeCCCCeEEEEee-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEE
Q psy3640         427 SS-SLDGTAKLWDVRTMCCFYTLK-NHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDI  504 (616)
Q Consensus       427 ~~-~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~  504 (616)
                      +. +.++.|..++. .+.....+. ........+++.+++..+++....+.+.+++....  ....+.. .........+
T Consensus        87 ~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~--~~~~~g~-~~~~~~~~~i  162 (279)
T d1q7fa_          87 TERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGC-SKHLEFPNGV  162 (279)
T ss_dssp             EECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEEC-TTTCSSEEEE
T ss_pred             eccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--eeecccc-ccccccccee
Confidence            33 34456777775 455555553 33466789999999998888888788888887653  3333322 2334456778


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCceEEeEEe--eccccCEEEEEEecCCCEEEEEEC-CCcEEEecCCcCeeeeEecc
Q psy3640         505 AFDYSGSKLATASSDQTAKLWTVGGAVELLQTF--YGHSNEVSKVSFHPTGKLVLSGSQ-DTTCRLWSTESGECIQVLKA  581 (616)
Q Consensus       505 ~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~h~~~v~~l~~spdg~~l~s~s~-dg~i~iwd~~~~~~~~~~~~  581 (616)
                      ++++++..+++....+.|.+|+....  .+..+  .++......|++.|+|+++++-.. ++.|.+|+. +|+.+.++..
T Consensus       163 ~~d~~g~i~v~d~~~~~V~~~d~~G~--~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~  239 (279)
T d1q7fa_         163 VVNDKQEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES  239 (279)
T ss_dssp             EECSSSEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE
T ss_pred             eeccceeEEeeeccccceeeeecCCc--eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeC
Confidence            99999999999889999999998763  33333  234456889999999997776543 457999985 6888777643


Q ss_pred             C--cccEEEEEEeeCCCEEEEeeCCCcEEEcccCC
Q psy3640         582 H--EDDVFSCGFNYNGDTIITASKDNTCCIWRSMN  614 (616)
Q Consensus       582 h--~~~V~~l~~s~~~~~l~t~s~Dg~i~vW~~~~  614 (616)
                      .  ......+++.++|.+++ ++.+++|++|+...
T Consensus       240 ~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         240 KVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             SSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             CCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            3  23578899999997554 56789999998753

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.12  E-value=2.9e-08  Score=93.94  Aligned_cols=241  Identities=9%  Similarity=-0.026  Sum_probs=158.8

Q ss_pred             ceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCC
Q psy3640         343 QEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSN  422 (616)
Q Consensus       343 ~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  422 (616)
                      +.+..+.. ...+..++++|||+++++...+++|..|+..                  .....+......+..+++++++
T Consensus        19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~------------------g~~~~~~~~~~~~~gla~~~dG   79 (302)
T d2p4oa1          19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPD------------------GNQQIHATVEGKVSGLAFTSNG   79 (302)
T ss_dssp             EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTT------------------CCEEEEEECSSEEEEEEECTTS
T ss_pred             cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCC------------------CCEEEEEcCCCCcceEEEcCCC
Confidence            34444432 2357899999999999998889988888753                  2233445566778999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCC--eEEEEe-ecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEecc-----
Q psy3640         423 SMIASSSLDGTAKLWDVRTM--CCFYTL-KNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGH-----  494 (616)
Q Consensus       423 ~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----  494 (616)
                      +++++...++.+..++....  ...... .........+++.++++++++.+.++.+..++..............     
T Consensus        80 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  159 (302)
T d2p4oa1          80 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  159 (302)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             CeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceee
Confidence            99999888888888876432  222111 1244568899999999999988888888888887654333222111     


Q ss_pred             -CCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEe-EEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCc
Q psy3640         495 -SNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELL-QTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTES  572 (616)
Q Consensus       495 -~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~  572 (616)
                       .........+.++. +.++++.+..+.|..++........ ............+++.++|++.++...++.|..++...
T Consensus       160 ~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         160 SESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             TTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             ccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence             11122334455543 3455556678888888875532211 11111234456799999999888888889999998753


Q ss_pred             Ce-eeeEeccCcccEEEEEE---eeCCCEEEEeeC
Q psy3640         573 GE-CIQVLKAHEDDVFSCGF---NYNGDTIITASK  603 (616)
Q Consensus       573 ~~-~~~~~~~h~~~V~~l~~---s~~~~~l~t~s~  603 (616)
                      .. .+......-...++++|   ++|++.|..++.
T Consensus       239 ~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         239 STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            32 23333434456899999   678887765544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.12  E-value=3.4e-08  Score=93.40  Aligned_cols=228  Identities=12%  Similarity=0.055  Sum_probs=157.4

Q ss_pred             eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccc
Q psy3640         314 AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAE  393 (616)
Q Consensus       314 ~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~  393 (616)
                      ..+++.|||+++++...+++|..++... + ...+......+.+++|+++|+++++...++.+..|+....         
T Consensus        31 e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~---------   99 (302)
T d2p4oa1          31 ENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS---------   99 (302)
T ss_dssp             EEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT---------
T ss_pred             CCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccc---------
Confidence            4578999999999999899998888653 3 3344456678899999999999999988899988887532         


Q ss_pred             cccccCCcceE-EEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec----------CCCCEEEEEEcC
Q psy3640         394 STYRASHKPIH-ILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN----------HEDEVLDIAFDY  462 (616)
Q Consensus       394 ~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~l~~~~  462 (616)
                           ...... ...........+++.++++++++.+.++.+..+|...+........          .......+.++.
T Consensus       100 -----~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~  174 (302)
T d2p4oa1         100 -----DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG  174 (302)
T ss_dssp             -----TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET
T ss_pred             -----ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC
Confidence                 111111 1122345577889999999999888889999999887754332221          112456676654


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeee--EEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeecc
Q psy3640         463 SGSKLATASSDQTANLWTVGGAVELLQ--TFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGH  540 (616)
Q Consensus       463 ~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h  540 (616)
                       +..+++.+..+.+..++.........  ......    ....++++++|+++++...++.|..++.......+......
T Consensus       175 -~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~  249 (302)
T d2p4oa1         175 -NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT----NIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQG  249 (302)
T ss_dssp             -TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC----CCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGT
T ss_pred             -CceeeecCCCCeEEeccccccccccccccccCCC----CCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCC
Confidence             34556667778888888765432211  111111    12358999999988888889999999887654444444444


Q ss_pred             ccCEEEEEE---ecCCCEEEEEECC
Q psy3640         541 SNEVSKVSF---HPTGKLVLSGSQD  562 (616)
Q Consensus       541 ~~~v~~l~~---spdg~~l~s~s~d  562 (616)
                      -...++++|   ++|++.|..++..
T Consensus       250 ~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         250 VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCceEEEEcCCCCCCCEEEEECCC
Confidence            456899999   6788888766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=4e-08  Score=91.11  Aligned_cols=234  Identities=15%  Similarity=0.157  Sum_probs=145.4

Q ss_pred             cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC---cEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         333 TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS---SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       333 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                      .|.+.|.. |.....+..+...+.+.+|||||+.||......   .+.+.+.                 .......+..+
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~   81 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-----------------ANGAVRQVASF   81 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-----------------TTCCEEEEECC
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeec-----------------ccCceeEEeee
Confidence            47777866 444444545677889999999999999776543   2444444                 33444566667


Q ss_pred             ccceeEEEEccCCCEEEEEeCC-Cc--EEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEE-eCCCcEEE--EecCC
Q psy3640         410 SQEISNCLFNFSNSMIASSSLD-GT--AKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATA-SSDQTANL--WTVGG  483 (616)
Q Consensus       410 ~~~i~~~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~-~~dg~i~i--wd~~~  483 (616)
                      ........|+|+++.++..... +.  +..+........ .............+++++..++.. ..+|...+  .++..
T Consensus        82 ~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          82 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             ecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeeeeccc
Confidence            7888889999999988876643 22  333333333322 222344445556677777655544 44554444  44444


Q ss_pred             ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCC-c--EEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEE
Q psy3640         484 AVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQ-T--AKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGS  560 (616)
Q Consensus       484 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~--i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s  560 (616)
                      ...  ....   ..........++|+++.++..+.++ .  +.+.+.....  . ....+........|||||+.|+..+
T Consensus       161 ~~~--~~~~---~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~p~~SPDG~~i~f~s  232 (269)
T d2hqsa1         161 GAP--QRIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--V-QVLSSTFLDETPSLAPNGTMVIYSS  232 (269)
T ss_dssp             SCC--EECC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC--E-EECCCSSSCEEEEECTTSSEEEEEE
T ss_pred             ccc--eeee---cccccccccccccccceeEEEeecCCceeeeEeeccccc--c-eEeecCccccceEECCCCCEEEEEE
Confidence            321  1111   1223456679999999988776654 3  4444444432  2 2333556677889999999988655


Q ss_pred             C---CCcEEEecCCcCeeeeEeccCcccEEEEEEeeC
Q psy3640         561 Q---DTTCRLWSTESGECIQVLKAHEDDVFSCGFNYN  594 (616)
Q Consensus       561 ~---dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~  594 (616)
                      .   ...+.++++..+.. ..+....+.+...+|||-
T Consensus       233 ~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         233 SQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECCC
T ss_pred             cCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCCC
Confidence            3   34688999976654 456556777888999983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=1.5e-07  Score=87.74  Aligned_cols=237  Identities=10%  Similarity=0.132  Sum_probs=153.9

Q ss_pred             eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec------CCcCEEEEEEcCCCCEEEEEE--CCCcEEEEeccccc
Q psy3640         314 AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA------HTGPVISLQFSSDRNMLITGS--FDSSIVVWDIQYQF  385 (616)
Q Consensus       314 ~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~v~~l~~~~~~~~l~~g~--~dg~i~iwd~~~~~  385 (616)
                      ..++++++++.+++-..+..|++||.+ |+.+..+..      .......+++.++....+...  .++.|..++.    
T Consensus        26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~----  100 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ----  100 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT----
T ss_pred             cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc----
Confidence            456777777766666666777777754 555555421      111234556555543333332  3445666654    


Q ss_pred             CCcccccccccccCCcceEEE-ecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee--cCCCCEEEEEEcC
Q psy3640         386 GTRNAYAESTYRASHKPIHIL-TGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK--NHEDEVLDIAFDY  462 (616)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~~~  462 (616)
                                   .......+ .........+++.+++.++++....+.+.+++.. ++.+..+.  .+......+++++
T Consensus       101 -------------~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~  166 (279)
T d1q7fa_         101 -------------YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND  166 (279)
T ss_dssp             -------------TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS
T ss_pred             -------------cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecc
Confidence                         22333333 2234556788889999988888888889888854 55555553  3456788999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceEEeEEee--c
Q psy3640         463 SGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVELLQTFY--G  539 (616)
Q Consensus       463 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~--~  539 (616)
                      +++.+++....+.|++|+....  ....+ +..........++++++|+.+++-.. ++.|.+|+...  +.+..+.  .
T Consensus       167 ~g~i~v~d~~~~~V~~~d~~G~--~~~~~-g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G--~~~~~~~~~~  241 (279)
T d1q7fa_         167 KQEIFISDNRAHCVKVFNYEGQ--YLRQI-GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG--QLISALESKV  241 (279)
T ss_dssp             SSEEEEEEGGGTEEEEEETTCC--EEEEE-SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS--CEEEEEEESS
T ss_pred             ceeEEeeeccccceeeeecCCc--eeeee-cccccccCCcccccccCCeEEEEECCCCcEEEEECCCC--CEEEEEeCCC
Confidence            9998888888899999998663  22222 22333344668999999997777554 45799998765  3333333  2


Q ss_pred             cccCEEEEEEecCCCEEEEEECCCcEEEecCCcCee
Q psy3640         540 HSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGEC  575 (616)
Q Consensus       540 h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~  575 (616)
                      .......+++.|+|+++ +++.+..|++|......+
T Consensus       242 ~~~~p~~vav~~dG~l~-V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         242 KHAQCFDVALMDDGSVV-LASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CCSCEEEEEEETTTEEE-EEETTTEEEEEECSCCCC
T ss_pred             CCCCEeEEEEeCCCcEE-EEeCCCeEEEEEeeeecC
Confidence            23467899999999754 456789999999876543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=7.9e-08  Score=93.40  Aligned_cols=163  Identities=11%  Similarity=0.086  Sum_probs=104.1

Q ss_pred             cceeEEEEccCCCEEEEEeC-CCcEEEEeCCC-CeE--EEEee--cCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCC
Q psy3640         411 QEISNCLFNFSNSMIASSSL-DGTAKLWDVRT-MCC--FYTLK--NHEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGG  483 (616)
Q Consensus       411 ~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~--~~~~~--~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~  483 (616)
                      ..+.++.|+|+++++++++. ...|.+|+... +..  .....  ........++|+|+++++.+.. .+++|.+|++..
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence            34678999999998888765 34688887543 222  22222  2346789999999999886655 578899999865


Q ss_pred             ceeee----eEEe-----------ccCCCeeeEEEEEEcCCCCEEEEEeC------CCcEEEEecCCceEEeEE-----e
Q psy3640         484 AVELL----QTFY-----------GHSNEVSKVLDIAFDYSGSKLATASS------DQTAKLWTVGGAVELLQT-----F  537 (616)
Q Consensus       484 ~~~~~----~~~~-----------~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~-----~  537 (616)
                      .....    ....           ...........+.++|+|++|+++..      .+.|..|++.........     .
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            43211    1111           01112234567899999999988753      233777777543222211     1


Q ss_pred             eccccCEEEEEEec-CCCEEEEE-ECCCcEEEecCCcC
Q psy3640         538 YGHSNEVSKVSFHP-TGKLVLSG-SQDTTCRLWSTESG  573 (616)
Q Consensus       538 ~~h~~~v~~l~~sp-dg~~l~s~-s~dg~i~iwd~~~~  573 (616)
                      .........++++| +|++|+++ ..++.|.+|++...
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            12234567799998 79988766 46789999987544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.5e-08  Score=101.94  Aligned_cols=342  Identities=15%  Similarity=0.167  Sum_probs=193.8

Q ss_pred             EEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCC---CCcEEEEEEeCCCCCEEEEEE---------CCCeEEEEeCCCc
Q psy3640         236 AFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGH---QNVVYAVAFSEPYGDKILTGS---------FDKTLKLWASAKE  303 (616)
Q Consensus       236 ~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h---~~~V~~l~~~~~~~~~l~s~s---------~dg~i~iwd~~~~  303 (616)
                      .|.+++.++.-..+|.|.+||+.+++....+..+   .-.+....|+ |++++++...         ..+.+.++|+.++
T Consensus        23 ~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~S-pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEEC-CCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            5777877776677889999999998875545432   2356777888 8899888764         3567889999988


Q ss_pred             ceeEEeee--ce---eeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cCCcC-----------------EEEEEE
Q psy3640         304 ECIQTYRG--HS---AEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK-AHTGP-----------------VISLQF  360 (616)
Q Consensus       304 ~~~~~~~~--~~---~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~-----------------v~~l~~  360 (616)
                      +.......  ..   ....|+|+|+.+|... ++.|.+.+..++..++... +..+.                 -.++.|
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W  180 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW  180 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence            75443221  11   2357999999998876 6678888887766554432 11111                 247789


Q ss_pred             cCCCCEEEEEEC-CCcEEEEecccccCCcc-ccccccccc--CCcc---eEEE-----------------ecCccceeEE
Q psy3640         361 SSDRNMLITGSF-DSSIVVWDIQYQFGTRN-AYAESTYRA--SHKP---IHIL-----------------TGHSQEISNC  416 (616)
Q Consensus       361 ~~~~~~l~~g~~-dg~i~iwd~~~~~~~~~-~~~~~~~~~--~~~~---~~~~-----------------~~~~~~i~~~  416 (616)
                      +|||+.||.... +..|..+.+........ .......+.  ...+   +...                 .....-+..+
T Consensus       181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~  260 (465)
T d1xfda1         181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV  260 (465)
T ss_dssp             CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred             CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence            999999998764 34555555432111100 000000000  0000   0001                 0111235678


Q ss_pred             EEccCCCEEEEEeCC----CcEEEEeCCCCeEEEEeecC-CCCE----EEEEEcCCCCEEEE---EeCCC--cEEEEecC
Q psy3640         417 LFNFSNSMIASSSLD----GTAKLWDVRTMCCFYTLKNH-EDEV----LDIAFDYSGSKLAT---ASSDQ--TANLWTVG  482 (616)
Q Consensus       417 ~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~-~~~v----~~l~~~~~~~~l~~---~~~dg--~i~iwd~~  482 (616)
                      .|+++++.++.....    ..+.++|..++++...+... ...|    ....|+++|+.++.   ...+|  .+....+.
T Consensus       261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~  340 (465)
T d1xfda1         261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS  340 (465)
T ss_dssp             EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred             EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEec
Confidence            899998866654432    25888999999776555432 2222    34578899885432   22333  33333321


Q ss_pred             C-----ceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE-EeCC--CcEEEEec--CCce--EEeEEeeccccCEEEEEEe
Q psy3640         483 G-----AVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT-ASSD--QTAKLWTV--GGAV--ELLQTFYGHSNEVSKVSFH  550 (616)
Q Consensus       483 ~-----~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-~~~d--g~i~vwd~--~~~~--~~~~~~~~h~~~v~~l~~s  550 (616)
                      .     .......+....-.+..+  ++++.+++.+.. +..+  +.-.+|.+  ....  +++............+.||
T Consensus       341 ~~~~~~~~~~~~~LT~G~w~V~~i--~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S  418 (465)
T d1xfda1         341 SSQPNSSNDNIQSITSGDWDVTKI--LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFS  418 (465)
T ss_dssp             CSSCCSSSCCCCBSCCSSSCEEEE--EEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEEC
T ss_pred             cccccCCCceeEEeccCCceEEEE--EEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEEC
Confidence            1     111111111112222222  468888877654 3332  23344444  3321  1111111234456789999


Q ss_pred             cCCCEEEEEECC---CcEEEecCCcCeeeeEecc
Q psy3640         551 PTGKLVLSGSQD---TTCRLWSTESGECIQVLKA  581 (616)
Q Consensus       551 pdg~~l~s~s~d---g~i~iwd~~~~~~~~~~~~  581 (616)
                      |++++++.....   -.+.+++..+++.+..+..
T Consensus       419 ~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le~  452 (465)
T d1xfda1         419 HSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLET  452 (465)
T ss_dssp             TTSSEEEEECCSSSSCCEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEeecCCCCeEEEEECCCCCEEEEEcC
Confidence            999998854433   4588888888888887753

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=8.5e-09  Score=95.28  Aligned_cols=236  Identities=7%  Similarity=-0.024  Sum_probs=152.6

Q ss_pred             CcEEEEEEcCCCCEE-EE-ECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeE
Q psy3640         230 NVVYAVAFSEPYGCL-TG-SYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQ  307 (616)
Q Consensus       230 ~~I~~l~fs~~~~ll-s~-s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~  307 (616)
                      .....+++.+++.+. +. +..+.+..++............-......++++ ++++.+++....+.+++++..+...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~-~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEEC-TTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEc-CCCCEEEeeeeeceeeeeeeccceeee
Confidence            346899999999954 43 345677777655443322222223345678888 778888777777777777666555443


Q ss_pred             Eee--eceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEeccccc
Q psy3640         308 TYR--GHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQF  385 (616)
Q Consensus       308 ~~~--~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~  385 (616)
                      ...  .....+++.++++++++-..+..+..++..................+++++++++.+++...++.|..++...  
T Consensus        93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~--  170 (260)
T d1rwia_          93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--  170 (260)
T ss_dssp             CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTT--
T ss_pred             eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccc--
Confidence            333  2335678999998887776677777777655433222222234457899999999888888888899998752  


Q ss_pred             CCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC
Q psy3640         386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS  465 (616)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  465 (616)
                                    ................+++.++++++++....+.|..++.............-.....|+++++|.
T Consensus       171 --------------~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~  236 (260)
T d1rwia_         171 --------------NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT  236 (260)
T ss_dssp             --------------CCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC
T ss_pred             --------------ceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC
Confidence                          211111123344567889999999888888888899888765432222222335678999999998


Q ss_pred             EEEEEeCCCcEEEEecC
Q psy3640         466 KLATASSDQTANLWTVG  482 (616)
Q Consensus       466 ~l~~~~~dg~i~iwd~~  482 (616)
                      ++++-..+++|+.++..
T Consensus       237 l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         237 VYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEEEEGGGTEEEEECCC
T ss_pred             EEEEECCCCEEEEEeCC
Confidence            87776677777766543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.01  E-value=2.1e-07  Score=88.16  Aligned_cols=237  Identities=11%  Similarity=0.134  Sum_probs=148.5

Q ss_pred             eEEEcCCCCEEEEEeC-------CCcEEEEECCCCceeEEeecC----CcCEEEEEEcCCCCEEEEEECCCcEEEEeccc
Q psy3640         315 EVTFSPDQSTFCSCSM-------DHTARIFNTNSGQEMHTLKAH----TGPVISLQFSSDRNMLITGSFDSSIVVWDIQY  383 (616)
Q Consensus       315 ~v~~~~~~~~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~----~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~  383 (616)
                      .++|.++++..++...       +|+|..||..++.........    .+....++|.++++.++++...+.+..++...
T Consensus        22 Gpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g  101 (314)
T d1pjxa_          22 GPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDG  101 (314)
T ss_dssp             EEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTS
T ss_pred             EeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCC
Confidence            4577888877665432       467888888877654433221    22357899999999888888777788887642


Q ss_pred             ccCCcccccccccccCCcceEEEec-C----ccceeEEEEccCCCEEEEEeC---------------CCcEEEEeCCCCe
Q psy3640         384 QFGTRNAYAESTYRASHKPIHILTG-H----SQEISNCLFNFSNSMIASSSL---------------DGTAKLWDVRTMC  443 (616)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~  443 (616)
                      ..                 ...... .    -.....+++.++|.+.++...               .|.+..++.. ++
T Consensus       102 ~~-----------------~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_         102 TF-----------------EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             CE-----------------EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred             cE-----------------EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cc
Confidence            11                 110000 0    112467889999988776432               2345555543 33


Q ss_pred             EEEEeecCCCCEEEEEEcCCCC-----EEEEEeCCCcEEEEecCCceeee--eEEecc-CCCeeeEEEEEEcCCCCEEEE
Q psy3640         444 CFYTLKNHEDEVLDIAFDYSGS-----KLATASSDQTANLWTVGGAVELL--QTFYGH-SNEVSKVLDIAFDYSGSKLAT  515 (616)
Q Consensus       444 ~~~~~~~~~~~v~~l~~~~~~~-----~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~~~~i~~~~~s~~~~~l~~  515 (616)
                      ..... ..-...+.++|+|++.     +.++-+..+.|..|++.......  ..+... .........++++.+|++.++
T Consensus       164 ~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         164 MIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             EEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             eeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE
Confidence            22222 2233457889988764     44455677888888875432221  111111 111223457899999999888


Q ss_pred             EeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEE-EEEECCCcEEEecCC
Q psy3640         516 ASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLV-LSGSQDTTCRLWSTE  571 (616)
Q Consensus       516 ~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l-~s~s~dg~i~iwd~~  571 (616)
                      ....+.|.+||.+.+ .....+.......++++|.||++.| ++.+.+|.|...++.
T Consensus       243 ~~~~g~I~~~dp~~g-~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EcCCCEEEEEeCCCC-EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            888999999998764 3444455555678999999999754 555667877777754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.99  E-value=1.7e-06  Score=81.97  Aligned_cols=230  Identities=10%  Similarity=0.050  Sum_probs=149.7

Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC
Q psy3640         352 TGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD  431 (616)
Q Consensus       352 ~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  431 (616)
                      ...+..++|.++|++.++-...+.|..|+..                .................++++++|+++++...+
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~----------------g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~  102 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPE----------------TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGD  102 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTT----------------TCCEEEEEECSSSSEEEEEECTTSCEEEEECTT
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECC----------------CCeEEEEEeCCCCCeeEEEECCCCCEEEEecCC
Confidence            3455789999999977777788888888875                333344444555667889999999988876532


Q ss_pred             ----CcEEEEeCCCCeEEEEeec--CCCCEEEEEEcCCCCEEEEEeCC------CcEEEEecCCceeeeeEEeccCCCee
Q psy3640         432 ----GTAKLWDVRTMCCFYTLKN--HEDEVLDIAFDYSGSKLATASSD------QTANLWTVGGAVELLQTFYGHSNEVS  499 (616)
Q Consensus       432 ----g~i~iwd~~~~~~~~~~~~--~~~~v~~l~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~  499 (616)
                          +.+...+............  .......++++++|++.++....      +.+..++....  .......   ...
T Consensus       103 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~~~---~~~  177 (319)
T d2dg1a1         103 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQ---NIS  177 (319)
T ss_dssp             SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEEEE---EES
T ss_pred             CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--eeEEEee---ccc
Confidence                3466666665544333322  23457889999999876664321      22444444332  1111111   112


Q ss_pred             eEEEEEEcCCCCEEEEE-eCCCcEEEEecCCceEEe----E---EeeccccCEEEEEEecCCCEEEEEECCCcEEEecCC
Q psy3640         500 KVLDIAFDYSGSKLATA-SSDQTAKLWTVGGAVELL----Q---TFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTE  571 (616)
Q Consensus       500 ~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~~~~----~---~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~  571 (616)
                      ....++|+|+++.|+.+ +..+.|..|++.......    .   ...........+++.++|++.++....+.|.+||. 
T Consensus       178 ~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-  256 (319)
T d2dg1a1         178 VANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-  256 (319)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-
T ss_pred             eeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-
Confidence            24568999999976555 557899999885421111    1   11111233568999999998888888999999996 


Q ss_pred             cCeeeeEecc------CcccEEEEEEeeCCCEEEEeeC
Q psy3640         572 SGECIQVLKA------HEDDVFSCGFNYNGDTIITASK  603 (616)
Q Consensus       572 ~~~~~~~~~~------h~~~V~~l~~s~~~~~l~t~s~  603 (616)
                      .|+.+..+..      +...+++++|.+++..+++.+.
T Consensus       257 ~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         257 RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            6888877753      3345789999998877766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=3.7e-07  Score=84.29  Aligned_cols=219  Identities=12%  Similarity=0.043  Sum_probs=135.4

Q ss_pred             heecccCCcceEEEEECCCCCEEEEEECCC---cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEE--EECCCcEEE
Q psy3640         180 FKMLKSHLLPLTNITFDKFGTRCLTGSYDR---TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLT--GSYDRTCKL  254 (616)
Q Consensus       180 ~~~l~~h~~~i~~v~~s~~g~~lasgs~dg---~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls--~s~d~~I~i  254 (616)
                      .+.+..+...+.+.+|||||+.||-.....   .+.+.+...+... .+..+........|+|++..++  ...++...+
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~  109 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  109 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccce
Confidence            355566778889999999999999776543   4666676666554 5566788889999999999552  333333333


Q ss_pred             E--eCCCCceEEEeeCCCCcEEEEEEeCCCCCE-EEEEECCCe--EEEEeCCCcceeEEee--eceeeEEEcCCCCEEEE
Q psy3640         255 W--DIKSGHEICTYRGHQNVVYAVAFSEPYGDK-ILTGSFDKT--LKLWASAKEECIQTYR--GHSAEVTFSPDQSTFCS  327 (616)
Q Consensus       255 w--d~~~~~~~~~~~~h~~~V~~l~~~~~~~~~-l~s~s~dg~--i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~  327 (616)
                      +  ....... ..............++ +++.. +++...++.  +...+...+.......  .......++|++..++.
T Consensus       110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~  187 (269)
T d2hqsa1         110 YVMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVM  187 (269)
T ss_dssp             EEEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEE
T ss_pred             eecccccccc-eeeeeccccccccccc-cccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEE
Confidence            3  3333332 2333344445555666 44444 444444554  5555666554332222  22233479999999887


Q ss_pred             EeCCC-c--EEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC---CcEEEEecccccCCcccccccccccCCc
Q psy3640         328 CSMDH-T--ARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD---SSIVVWDIQYQFGTRNAYAESTYRASHK  401 (616)
Q Consensus       328 ~~~dg-~--i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~  401 (616)
                      .+.++ .  +.+.+...+..  ....+........|+|||+.|+..+..   ..+.++++.                 ..
T Consensus       188 ~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d-----------------g~  248 (269)
T d2hqsa1         188 VSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-----------------GR  248 (269)
T ss_dssp             EEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-----------------SC
T ss_pred             EeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC-----------------CC
Confidence            76553 4  44445554433  333456667788999999998765543   457788874                 33


Q ss_pred             ceEEEecCccceeEEEEcc
Q psy3640         402 PIHILTGHSQEISNCLFNF  420 (616)
Q Consensus       402 ~~~~~~~~~~~i~~~~~~~  420 (616)
                      ....+......+...+|+|
T Consensus       249 ~~~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         249 FKARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CEEECCCSSSEEEEEEECC
T ss_pred             CEEEEeCCCCcEEeEEeCC
Confidence            4455666666777788887

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.87  E-value=4.7e-06  Score=78.76  Aligned_cols=228  Identities=11%  Similarity=0.049  Sum_probs=151.6

Q ss_pred             cCCcceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEC-----CCcEEEEeCCC
Q psy3640         185 SHLLPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSY-----DRTCKLWDIKS  259 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~-----d~~I~iwd~~~  259 (616)
                      .....+..++|+++|++.++-...+.|..|+.++++....+.........+++.++++++++..     .+.+...+..+
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            3445567899999999888877889999999888877777776777889999999999775543     23455556565


Q ss_pred             CceEEEeeC--CCCcEEEEEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEee--eceeeEEEcCCCCEEEEE-
Q psy3640         260 GHEICTYRG--HQNVVYAVAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYR--GHSAEVTFSPDQSTFCSC-  328 (616)
Q Consensus       260 ~~~~~~~~~--h~~~V~~l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~l~~~-  328 (616)
                      +........  -......+++. ++|++.++...      .+.+..++...........  .....++|+|+++.|+.+ 
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d-~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFD-SKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEEC-TTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEE-eccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEec
Confidence            554444332  23457788898 78887666432      1235555544433222222  234568999999876554 


Q ss_pred             eCCCcEEEEECCCC-ceeEEe-------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCC
Q psy3640         329 SMDHTARIFNTNSG-QEMHTL-------KAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       329 ~~dg~i~i~d~~~~-~~~~~~-------~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                      +..+.|..|++... ......       .........|++.++|++.++....+.|.++|.                 .+
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-----------------~G  258 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-----------------RG  258 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-----------------TS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-----------------CC
Confidence            56789999987643 211111       111223568999999998888888999999996                 34


Q ss_pred             cceEEEe------cCccceeEEEEccCCCEEEEEeC
Q psy3640         401 KPIHILT------GHSQEISNCLFNFSNSMIASSSL  430 (616)
Q Consensus       401 ~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~  430 (616)
                      +.+..+.      ++...+++++|.++...+++...
T Consensus       259 ~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         259 YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             cEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            4444433      23345778999888777766554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.9e-07  Score=88.95  Aligned_cols=327  Identities=13%  Similarity=0.077  Sum_probs=173.7

Q ss_pred             EEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeee------ceeeEEEcCCCCEEEEEeC---------CCcEEEEECCC
Q psy3640         277 AFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRG------HSAEVTFSPDQSTFCSCSM---------DHTARIFNTNS  341 (616)
Q Consensus       277 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~l~~~~~---------dg~i~i~d~~~  341 (616)
                      .|. +++.++ .-..+|.+.+||+.+++....+..      ......++||+++++....         .+.+.++|+.+
T Consensus        23 ~W~-~~~~~~-~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          23 KWI-SDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CBS-SSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             EEe-CCCcEE-EEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            455 455544 345678899999988876444432      1234479999999887643         46789999998


Q ss_pred             CceeEEee--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCc---------
Q psy3640         342 GQEMHTLK--AHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS---------  410 (616)
Q Consensus       342 ~~~~~~~~--~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  410 (616)
                      +.......  .....+....|+|||+.+|... ++.|.+.+.......+...       .+..-..+.+..         
T Consensus       101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~-------~g~~~~i~nG~~d~vyeee~~  172 (465)
T d1xfda1         101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVS-------TGKEGVIYNGLSDWLYEEEIL  172 (465)
T ss_dssp             CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEEC-------CCBTTTEEEEECCHHHHHTTS
T ss_pred             CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEec-------ccCcceeeccccchhhhhhhc
Confidence            87543322  2334556688999999998876 6678877765321110000       000000111111         


Q ss_pred             cceeEEEEccCCCEEEEEeCC-C---------------------------------cEEEEeCCCCeEEEEee------c
Q psy3640         411 QEISNCLFNFSNSMIASSSLD-G---------------------------------TAKLWDVRTMCCFYTLK------N  450 (616)
Q Consensus       411 ~~i~~~~~~~~~~~l~~~~~d-g---------------------------------~i~iwd~~~~~~~~~~~------~  450 (616)
                      ..-.++.|||||+.|+....| .                                 .+.++|+.++.......      .
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~  252 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcc
Confidence            112467799999999887532 2                                 23444444332211111      1


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeC-C---CcEEEEecCCceeeeeEEeccCCCee-eEEEEEEcCCCCEEEE---EeCCC--
Q psy3640         451 HEDEVLDIAFDYSGSKLATASS-D---QTANLWTVGGAVELLQTFYGHSNEVS-KVLDIAFDYSGSKLAT---ASSDQ--  520 (616)
Q Consensus       451 ~~~~v~~l~~~~~~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~---~~~dg--  520 (616)
                      ....+..+.|+++++.++.... +   ..+.++|..++............-.. .-....|+++|+.++.   ...+|  
T Consensus       253 ~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~  332 (465)
T d1xfda1         253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (465)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             ccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccC
Confidence            1123677899999876555432 2   24777887765433221111111000 0123578999985432   22333  


Q ss_pred             cEEEEecC-----CceEEeEEeeccccCEEEE-EEecCCCEEEE-EECCC--cEEEec--CCcCeeeeEe---ccCcccE
Q psy3640         521 TAKLWTVG-----GAVELLQTFYGHSNEVSKV-SFHPTGKLVLS-GSQDT--TCRLWS--TESGECIQVL---KAHEDDV  586 (616)
Q Consensus       521 ~i~vwd~~-----~~~~~~~~~~~h~~~v~~l-~~spdg~~l~s-~s~dg--~i~iwd--~~~~~~~~~~---~~h~~~V  586 (616)
                      .+....+.     ........+....-.|+.+ +|+++++.|.. +..++  .-.+|.  +..+.....+   .......
T Consensus       333 ~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~  412 (465)
T d1xfda1         333 KFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTY  412 (465)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCC
T ss_pred             ceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCE
Confidence            33333221     1112222333334456665 68888876653 43332  223444  4333222222   2334457


Q ss_pred             EEEEEeeCCCEEEEeeCC---CcEEEcccC
Q psy3640         587 FSCGFNYNGDTIITASKD---NTCCIWRSM  613 (616)
Q Consensus       587 ~~l~~s~~~~~l~t~s~D---g~i~vW~~~  613 (616)
                      .++.|||++++++.....   -.+.+++..
T Consensus       413 ~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~  442 (465)
T d1xfda1         413 FSASFSHSMDFFLLKCEGPGVPMVTVHNTT  442 (465)
T ss_dssp             CEEEECTTSSEEEEECCSSSSCCEEEEETT
T ss_pred             EEEEECCCCCEEEEEeecCCCCeEEEEECC
Confidence            789999999988854433   345555544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.60  E-value=5.4e-05  Score=70.23  Aligned_cols=232  Identities=15%  Similarity=0.050  Sum_probs=145.3

Q ss_pred             EEEEECCCC-CEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC-
Q psy3640         191 TNITFDKFG-TRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG-  268 (616)
Q Consensus       191 ~~v~~s~~g-~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~-  268 (616)
                      -+..|++.. ++..+--..+.|.-||.++++.. .+. ....+.++++.+++.++.++.+ .+..+|..+++....... 
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEeeee
Confidence            356688754 44455556788999999988653 332 3557889999999998887765 588999998876443321 


Q ss_pred             ---CCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q psy3640         269 ---HQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEM  345 (616)
Q Consensus       269 ---h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  345 (616)
                         ....++.+.+. ++|++.++......                                   ..+.-.+|.+..++..
T Consensus        98 ~~~~~~~~nd~~vd-~~G~iw~~~~~~~~-----------------------------------~~~~g~l~~~~~g~~~  141 (295)
T d2ghsa1          98 SDLPGNRSNDGRMH-PSGALWIGTMGRKA-----------------------------------ETGAGSIYHVAKGKVT  141 (295)
T ss_dssp             TTCTTEEEEEEEEC-TTSCEEEEEEETTC-----------------------------------CTTCEEEEEEETTEEE
T ss_pred             cCCCcccceeeEEC-CCCCEEEEeccccc-----------------------------------cccceeEeeecCCcEE
Confidence               11245666665 55554444321100                                   0112234444444433


Q ss_pred             EEeecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCE
Q psy3640         346 HTLKAHTGPVISLQFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSM  424 (616)
Q Consensus       346 ~~~~~~~~~v~~l~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  424 (616)
                      .... .-.....++|+++++.++.+ +..+.|..+++.........        .........+.......+++..+|++
T Consensus       142 ~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~--------~~~~~~~~~~~~g~pdG~~vD~~Gnl  212 (295)
T d2ghsa1         142 KLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------KAEVFIDSTGIKGGMDGSVCDAEGHI  212 (295)
T ss_dssp             EEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------CCEEEEECTTSSSEEEEEEECTTSCE
T ss_pred             EEee-ccCCcceeeecCCCceEEEeecccceeeEeeeccccccccc--------ceEEEeccCcccccccceEEcCCCCE
Confidence            3332 23345789999999866554 45678888887532111100        11111222334455678899999998


Q ss_pred             EEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEc-CCCCEEEEEe
Q psy3640         425 IASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFD-YSGSKLATAS  471 (616)
Q Consensus       425 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~-~~~~~l~~~~  471 (616)
                      .++....+.|..||. .++.+..+......+++++|- ++.+.|++.+
T Consensus       213 Wva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         213 WNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             EeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            888888889999995 688888888766789999996 5666665543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.52  E-value=0.0004  Score=64.14  Aligned_cols=220  Identities=11%  Similarity=0.054  Sum_probs=140.7

Q ss_pred             EEEEcCCCC-EEEEEECCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEE
Q psy3640         357 SLQFSSDRN-MLITGSFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK  435 (616)
Q Consensus       357 ~l~~~~~~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  435 (616)
                      +..|++..+ +..+--..+.|..||..                ... ... ......+.++++.+++.++++ +.+ .+.
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~----------------~g~-~~~-~~~~~~~~~i~~~~dg~l~va-~~~-gl~   81 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLA----------------SGR-KTV-HALPFMGSALAKISDSKQLIA-SDD-GLF   81 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETT----------------TTE-EEE-EECSSCEEEEEEEETTEEEEE-ETT-EEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECC----------------CCe-EEE-EECCCCcEEEEEecCCCEEEE-EeC-ccE
Confidence            456776444 33343356778888765                222 122 223446778888888877765 444 588


Q ss_pred             EEeCCCCeEEEEeec----CCCCEEEEEEcCCCCEEEEEeC----CCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEc
Q psy3640         436 LWDVRTMCCFYTLKN----HEDEVLDIAFDYSGSKLATASS----DQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFD  507 (616)
Q Consensus       436 iwd~~~~~~~~~~~~----~~~~v~~l~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s  507 (616)
                      .+|..+++.......    ....++++.++|+|++.++...    .+.-.+|.+..+. .......    ......++++
T Consensus        82 ~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~~~~~~----~~~~Ng~~~s  156 (295)
T d2ghsa1          82 LRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VTKLFAD----ISIPNSICFS  156 (295)
T ss_dssp             EEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EEEEEEE----ESSEEEEEEC
T ss_pred             EeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc-EEEEeec----cCCcceeeec
Confidence            999998865433221    1235889999999987776542    2344556554432 2222211    1223568999


Q ss_pred             CCCCEEEEEe-CCCcEEEEecCCc-------eEEeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEe
Q psy3640         508 YSGSKLATAS-SDQTAKLWTVGGA-------VELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVL  579 (616)
Q Consensus       508 ~~~~~l~~~~-~dg~i~vwd~~~~-------~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~  579 (616)
                      ++++.++.+. ..+.|..+++...       ........+..+....+++..+|++.++.-..+.|..||. +|+.+..+
T Consensus       157 ~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i  235 (295)
T d2ghsa1         157 PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY  235 (295)
T ss_dssp             TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred             CCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence            9999766554 5788988887431       1222233344556788999999998887777889999995 68899888


Q ss_pred             ccCcccEEEEEEe-eCCCEE-EEee
Q psy3640         580 KAHEDDVFSCGFN-YNGDTI-ITAS  602 (616)
Q Consensus       580 ~~h~~~V~~l~~s-~~~~~l-~t~s  602 (616)
                      .-....+++++|- +|.+.| +|..
T Consensus       236 ~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         236 EVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             ECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             cCCCCceEEEEEeCCCCCEEEEEEC
Confidence            8777779999997 565554 4443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.30  E-value=6.5e-05  Score=68.90  Aligned_cols=227  Identities=15%  Similarity=0.090  Sum_probs=123.0

Q ss_pred             EECCC--CCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEE--EECC-----CcEEEEeCCCCceEE
Q psy3640         194 TFDKF--GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLT--GSYD-----RTCKLWDIKSGHEIC  264 (616)
Q Consensus       194 ~~s~~--g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls--~s~d-----~~I~iwd~~~~~~~~  264 (616)
                      ..|||  |+++|-.+ +|.|.+.|+.+++.. .+..+.+.+...+|||||+.++  ...+     ..|.+++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46788  99988765 457888899988764 6677788899999999999553  3222     247788888887654


Q ss_pred             Eee------CCCCcEEEEEEeCCCCCEEEEEECC------CeEEEEeCCCcceeEEeeeceeeEEEcCCCCE-EEEEeCC
Q psy3640         265 TYR------GHQNVVYAVAFSEPYGDKILTGSFD------KTLKLWASAKEECIQTYRGHSAEVTFSPDQST-FCSCSMD  331 (616)
Q Consensus       265 ~~~------~h~~~V~~l~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-l~~~~~d  331 (616)
                      ...      ..........|+ |+++.++.....      ..+...+...+.......+.... .+.+++.. ++.....
T Consensus        83 lt~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH-ILFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE-EEEETTEEEEEESCSC
T ss_pred             eeecCCCccCccccccccccC-CCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccce-eeecCCCeEEEeeccc
Confidence            322      112244677888 888888875432      23444555444433222222222 23333333 3322221


Q ss_pred             C-----------cEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEecccccCCccccccccccc
Q psy3640         332 H-----------TARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDS--SIVVWDIQYQFGTRNAYAESTYRA  398 (616)
Q Consensus       332 g-----------~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~  398 (616)
                      .           ............... ...........+.++. .+.....++  .|.++|+.                
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~----------------  222 (281)
T d1k32a2         161 LPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLD----------------  222 (281)
T ss_dssp             CTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETT----------------
T ss_pred             cceeeeeccCCcceeeeeccccceeec-cCCccccceeeeeccc-cceecccccccceEEEeCC----------------
Confidence            1           111122222222222 2233334444555442 233333333  45555654                


Q ss_pred             CCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEE
Q psy3640         399 SHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCF  445 (616)
Q Consensus       399 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~  445 (616)
                       ......+..+. ......|+|+|+.|+... ++.++++|+.+++..
T Consensus       223 -g~~~~~lt~~~-~~~~~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         223 -GKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE  266 (281)
T ss_dssp             -SCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE
T ss_pred             -CCceEEeecCC-CcccccCcCCCCEEEEEe-CCEEEEEECCCCCEE
Confidence             22222222221 122346899999887644 678999999888654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.24  E-value=0.0015  Score=66.57  Aligned_cols=108  Identities=16%  Similarity=0.152  Sum_probs=70.7

Q ss_pred             CCCEEEEECCCcEEEEeCCCCceEEEeeCCC--------CcE-EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee
Q psy3640         240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ--------NVV-YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR  310 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~--------~~V-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~  310 (616)
                      ++.+.+++.++.|.-.|.++|+.+.++....        ..+ ..+++.   ++.++.++.++.+.-.|..+++.+-...
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~---~~~i~~~t~~~~l~alda~tG~~~W~~~  144 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY---GDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE---TTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe---CCceEEecCCCeEEEecccccceeeeec
Confidence            5667788899999999999999998875221        111 123333   5678889999999999999998775432


Q ss_pred             e--ce-------eeEEEcC--CCCEEEEEe-------CCCcEEEEECCCCceeEEeec
Q psy3640         311 G--HS-------AEVTFSP--DQSTFCSCS-------MDHTARIFNTNSGQEMHTLKA  350 (616)
Q Consensus       311 ~--~~-------~~v~~~~--~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~  350 (616)
                      .  +.       ......+  ....++..+       ..+.|.-+|.++|+.+..+..
T Consensus       145 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~  202 (582)
T d1flga_         145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPF  202 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEES
T ss_pred             ccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEec
Confidence            1  11       1111111  233444332       346788999999999887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=9.9e-05  Score=67.63  Aligned_cols=234  Identities=12%  Similarity=0.074  Sum_probs=120.7

Q ss_pred             EcCC--CCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEEC-C-----CeEEEEeCCCcceeEE
Q psy3640         237 FSEP--YGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSF-D-----KTLKLWASAKEECIQT  308 (616)
Q Consensus       237 fs~~--~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~-d-----g~i~iwd~~~~~~~~~  308 (616)
                      .+||  |..++-..++.|.+.|+.+++.. .+..+.+.+...+|| |+|+.|+.... +     ..|.+++..+++..+.
T Consensus         6 ~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~S-PDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFF-PDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEEC-TTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEEC-CCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4677  88776667788999999988864 566677889999999 89999886643 2     2477778777765443


Q ss_pred             eee---------ceeeEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC
Q psy3640         309 YRG---------HSAEVTFSPDQSTFCSCSMD------HTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD  373 (616)
Q Consensus       309 ~~~---------~~~~v~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d  373 (616)
                      ...         .....+|+|+++.++.....      ..+...+...+.....   +........+.+.+..++....+
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  160 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFE  160 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccc
Confidence            211         12345799999998876432      2244445444433221   22222222233222222222211


Q ss_pred             CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC--CcEEEEeCCCCeEEEEeecC
Q psy3640         374 SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD--GTAKLWDVRTMCCFYTLKNH  451 (616)
Q Consensus       374 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~  451 (616)
                      .........   ..  . ..........................++++. .+.....+  ..|.++|+.++.........
T Consensus       161 ~~~~~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~  233 (281)
T d1k32a2         161 LPHWKGYRG---GT--R-GKIWIEVNSGAFKKIVDMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLRKHTSFT  233 (281)
T ss_dssp             CTTSTTCCS---TT--C-CEEEEEEETTEEEEEECCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCEECCCCC
T ss_pred             cceeeeecc---CC--c-ceeeeeccccceeeccCCccccceeeeeccc-cceecccccccceEEEeCCCCceEEeecCC
Confidence            100000000   00  0 0000000111112222222333333444332 22333333  35777888766543322222


Q ss_pred             CCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCce
Q psy3640         452 EDEVLDIAFDYSGSKLATASSDQTANLWTVGGAV  485 (616)
Q Consensus       452 ~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~  485 (616)
                      ...+  ..|+|+|+.|+.. .++.++++|+.++.
T Consensus       234 ~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         234 DYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             SSCE--EEEEESSSCEEEE-ETTEEEEECTTTCC
T ss_pred             Cccc--ccCcCCCCEEEEE-eCCEEEEEECCCCC
Confidence            2233  4689999988764 46789999987753

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=0.0025  Score=56.60  Aligned_cols=258  Identities=14%  Similarity=0.203  Sum_probs=162.9

Q ss_pred             CeEEEEeCCCcceeEEeeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEEC
Q psy3640         293 KTLKLWASAKEECIQTYRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSF  372 (616)
Q Consensus       293 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~  372 (616)
                      ..+.|.|+.++....+-.-.....-.+|..+.++.-+ ...+.+||+++.+.++...- ..+|.--.|-.+ +.|+..+ 
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT-  120 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-  120 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEEC-
T ss_pred             ceEEEEECCCCCcceecccchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEEEc-
Confidence            4788889988776555555555666889999998877 56899999999999988874 456777778755 4455444 


Q ss_pred             CCcEEEEecccccCCcccccccccccCCcceEEEecCc----cceeEEEEccCCCEEEEEe-------CCCcEEEEeCCC
Q psy3640         373 DSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHS----QEISNCLFNFSNSMIASSS-------LDGTAKLWDVRT  441 (616)
Q Consensus       373 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~  441 (616)
                      +..|+-|++..               ...|...+..|.    ..|..-..+++.++++..+       -.|.+.+|..+.
T Consensus       121 ~taVYHW~~~g---------------~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er  185 (327)
T d1utca2         121 DNAVYHWSMEG---------------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR  185 (327)
T ss_dssp             SSEEEEEESSS---------------SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred             CCceEEEcccC---------------CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence            56899999853               224555555443    3455556677777665433       136788998876


Q ss_pred             CeEEEEeecCCCCEEEEEEcCCC---CEEEEEe---CCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEE
Q psy3640         442 MCCFYTLKNHEDEVLDIAFDYSG---SKLATAS---SDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLAT  515 (616)
Q Consensus       442 ~~~~~~~~~~~~~v~~l~~~~~~---~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~  515 (616)
                      .. -+.+++|...-..+.+..+.   +.++.+.   ..+.+++-++.........+      .                 
T Consensus       186 ~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f------~-----------------  241 (327)
T d1utca2         186 KV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF------P-----------------  241 (327)
T ss_dssp             TE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC------C-----------------
T ss_pred             Cc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC------c-----------------
Confidence            53 45566665544443332111   1222221   12345555554311000000      0                 


Q ss_pred             EeCCCcEEEEecCCceEEeEEee---ccccCEEEEEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccEEEEEEe
Q psy3640         516 ASSDQTAKLWTVGGAVELLQTFY---GHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDVFSCGFN  592 (616)
Q Consensus       516 ~~~dg~i~vwd~~~~~~~~~~~~---~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V~~l~~s  592 (616)
                                     .+....+.   .-.+-..++..|+.-..+..-+.-|.+.+||++++.++..-+--.++|...+-.
T Consensus       242 ---------------kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~  306 (327)
T d1utca2         242 ---------------KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  306 (327)
T ss_dssp             ---------------CEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE
T ss_pred             ---------------ceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccC
Confidence                           01111111   123446678888888888888999999999999999998777777888866666


Q ss_pred             eCCCEEEEeeCCCcEE
Q psy3640         593 YNGDTIITASKDNTCC  608 (616)
Q Consensus       593 ~~~~~l~t~s~Dg~i~  608 (616)
                      .+..-++....+|.|.
T Consensus       307 ~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         307 EATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTTTEEEEEETTSEEE
T ss_pred             CCCceEEEECCCCeEE
Confidence            5656677777888764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.11  E-value=0.001  Score=67.68  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             CCCEEEEEECCCcEEEEEC-CCCcEEEEEeccCC----------cE-EEEEEcCCC-----CEEEEECCCcEEEEeCCCC
Q psy3640         198 FGTRCLTGSYDRTCKLWDI-KSGHEICTYRGHQN----------VV-YAVAFSEPY-----GCLTGSYDRTCKLWDIKSG  260 (616)
Q Consensus       198 ~g~~lasgs~dg~i~iwd~-~~~~~~~~~~~h~~----------~I-~~l~fs~~~-----~lls~s~d~~I~iwd~~~~  260 (616)
                      +|...++.+.++.+...|. ++|+.+-++.....          .+ ..+++.++.     .++.++.|+.|.-.|.++|
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            3444455555677888886 58998887752111          01 234444332     2668899999999999999


Q ss_pred             ceEEEeeCCC----CcEE-EEEEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEee
Q psy3640         261 HEICTYRGHQ----NVVY-AVAFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYR  310 (616)
Q Consensus       261 ~~~~~~~~h~----~~V~-~l~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~  310 (616)
                      +.+..+....    ..++ .-.+.   ++.++.++.      .|.|+-+|..+|+.+-++.
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~---~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~  199 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             ceeccccccccccccccccCCcEE---CCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence            9998875321    1111 11111   456666643      4889999999999887653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.04  E-value=0.0019  Score=65.48  Aligned_cols=310  Identities=10%  Similarity=0.025  Sum_probs=173.8

Q ss_pred             CCCEEEEEECCCcEEEEEC-CCCcEEEEEeccCC----c------E-EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEE
Q psy3640         198 FGTRCLTGSYDRTCKLWDI-KSGHEICTYRGHQN----V------V-YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICT  265 (616)
Q Consensus       198 ~g~~lasgs~dg~i~iwd~-~~~~~~~~~~~h~~----~------I-~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~  265 (616)
                      +|...++.+.++.|.-.|. ++|+.+-++.....    .      + ..+++. +++++.++.|+.+.-.|.++|+.+..
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~~~~g~l~alda~tG~~~w~  140 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee-CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence            3444444444688888887 47999887752111    0      0 123333 56677899999999999999998877


Q ss_pred             eeCCC----CcEEEE-EEeCCCCCEEEEEEC------CCeEEEEeCCCcceeEEeeece---------------------
Q psy3640         266 YRGHQ----NVVYAV-AFSEPYGDKILTGSF------DKTLKLWASAKEECIQTYRGHS---------------------  313 (616)
Q Consensus       266 ~~~h~----~~V~~l-~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~---------------------  313 (616)
                      .....    ..+++- ...   ++.++.+..      +|.|+-+|+.+|+.+-.+....                     
T Consensus       141 ~~~~~~~~~~~~t~~p~v~---~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  217 (571)
T d2ad6a1         141 VEVCDPKVGSTLTQAPFVA---KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEE---TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             ccccccccccceeecCeEe---CCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            64211    111111 111   355555553      6789999999999887653210                     


Q ss_pred             --------------------eeEEEcCCCCEEEEEeC----------------CCcEEEEECCCCceeEEeecCCcC---
Q psy3640         314 --------------------AEVTFSPDQSTFCSCSM----------------DHTARIFNTNSGQEMHTLKAHTGP---  354 (616)
Q Consensus       314 --------------------~~v~~~~~~~~l~~~~~----------------dg~i~i~d~~~~~~~~~~~~~~~~---  354 (616)
                                          ...++.+....+..+..                ...+...|.++|+.+..++.....   
T Consensus       218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd  297 (571)
T d2ad6a1         218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence                                11366777777776654                245778899999998887643221   


Q ss_pred             ------EEEEEEcCCCC---EEEEEECCCcEEEEecccccCCcc-------cccccccccCC--------------cceE
Q psy3640         355 ------VISLQFSSDRN---MLITGSFDSSIVVWDIQYQFGTRN-------AYAESTYRASH--------------KPIH  404 (616)
Q Consensus       355 ------v~~l~~~~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~--------------~~~~  404 (616)
                            ........+++   .++.++.+|.+.++|..+......       ...........              ....
T Consensus       298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~  377 (571)
T d2ad6a1         298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN  377 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred             cccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceE
Confidence                  11122222443   466778889998888764321100       00000000000              0011


Q ss_pred             EEecCccc--eeEEEEccCCCEEEEEeCC-------------------------------------CcEEEEeCCCCeEE
Q psy3640         405 ILTGHSQE--ISNCLFNFSNSMIASSSLD-------------------------------------GTAKLWDVRTMCCF  445 (616)
Q Consensus       405 ~~~~~~~~--i~~~~~~~~~~~l~~~~~d-------------------------------------g~i~iwd~~~~~~~  445 (616)
                      ......+.  -...+++|+...++....+                                     |.+.-+|+.+++.+
T Consensus       378 ~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~  457 (571)
T d2ad6a1         378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK  457 (571)
T ss_dssp             ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred             EEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCcee
Confidence            11111111  0124556665555443322                                     46888899998888


Q ss_pred             EEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC-EEEE
Q psy3640         446 YTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS-KLAT  515 (616)
Q Consensus       446 ~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~  515 (616)
                      .+...... ..+-...-.+.++++++.||.++.+|.++++.+.+..........++   .+..+|+ |+++
T Consensus       458 W~~~~~~~-~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~---ty~~dGkqYi~v  524 (571)
T d2ad6a1         458 WTKWEKFA-AWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPM---TYSFKGKQYIGS  524 (571)
T ss_dssp             EEEEESSC-CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETTEEEEEE
T ss_pred             eEcCCCCC-CCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecce---EEEECCEEEEEE
Confidence            77653221 11111122466888899999999999999877766655544433333   3444665 4433

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.00  E-value=0.0056  Score=61.80  Aligned_cols=297  Identities=11%  Similarity=0.025  Sum_probs=167.3

Q ss_pred             CCCEEEEEC-CCcEEEEeC-CCCceEEEeeCCCC-----------cEEEEEEeCCCCCEEEEEECCCeEEEEeCCCccee
Q psy3640         240 PYGCLTGSY-DRTCKLWDI-KSGHEICTYRGHQN-----------VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECI  306 (616)
Q Consensus       240 ~~~lls~s~-d~~I~iwd~-~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~  306 (616)
                      ++.+..++. ++.|...|. ++|+.+.++.....           .-..+++.   +..++.++.|+.+.-.|.++|+.+
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~---~~~i~~~~~~g~l~alda~tG~~~  138 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG---AGQIVKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee---CCeEEEEeCCCcEEeeehhhhhhh
Confidence            555555554 688888887 47999988752111           00234444   567888999999999999999987


Q ss_pred             EEeeece----eeEEEcC--CCCEEEEEeC------CCcEEEEECCCCceeEEeecCC----------------------
Q psy3640         307 QTYRGHS----AEVTFSP--DQSTFCSCSM------DHTARIFNTNSGQEMHTLKAHT----------------------  352 (616)
Q Consensus       307 ~~~~~~~----~~v~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~----------------------  352 (616)
                      -......    ..+.-.|  -+..++.+..      .|.|.-+|+.+|+.+..+....                      
T Consensus       139 w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~  218 (571)
T d2ad6a1         139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG  218 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred             ccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence            6654211    1111111  1234444442      6789999999999998765221                      


Q ss_pred             ---------------cCE-EEEEEcCCCCEEEEEECCC----------------cEEEEecccccCCcccccccccccCC
Q psy3640         353 ---------------GPV-ISLQFSSDRNMLITGSFDS----------------SIVVWDIQYQFGTRNAYAESTYRASH  400 (616)
Q Consensus       353 ---------------~~v-~~l~~~~~~~~l~~g~~dg----------------~i~iwd~~~~~~~~~~~~~~~~~~~~  400 (616)
                                     +.+ ...++.+....+..+..+.                .+.-.|.+                ++
T Consensus       219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~----------------TG  282 (571)
T d2ad6a1         219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLD----------------TG  282 (571)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETT----------------TC
T ss_pred             ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeecc----------------ch
Confidence                           011 2345666666666555432                23333333                33


Q ss_pred             cceEEEecCccce---------eEEEEccCCC---EEEEEeCCCcEEEEeCCCCeEEEEeecCCC-------------CE
Q psy3640         401 KPIHILTGHSQEI---------SNCLFNFSNS---MIASSSLDGTAKLWDVRTMCCFYTLKNHED-------------EV  455 (616)
Q Consensus       401 ~~~~~~~~~~~~i---------~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~v  455 (616)
                      +...........+         .......+++   .++.++.+|.+.++|..+++.+...+....             ++
T Consensus       283 ~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i  362 (571)
T d2ad6a1         283 MAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPV  362 (571)
T ss_dssp             CEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEE
T ss_pred             hheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccccccc
Confidence            3333333221111         1111222333   467788899999999999988754321100             00


Q ss_pred             --------------------------EEEEEcCCCCEEEEEeCC------------------------------------
Q psy3640         456 --------------------------LDIAFDYSGSKLATASSD------------------------------------  473 (616)
Q Consensus       456 --------------------------~~l~~~~~~~~l~~~~~d------------------------------------  473 (616)
                                                ...+++|+...+++...+                                    
T Consensus       363 ~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (571)
T d2ad6a1         363 RDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKE  442 (571)
T ss_dssp             ECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCC
T ss_pred             cCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCC
Confidence                                      125667776666654433                                    


Q ss_pred             -CcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecC
Q psy3640         474 -QTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPT  552 (616)
Q Consensus       474 -g~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spd  552 (616)
                       |.+.-+|+.+++...+..........     .++..+.++++|+.||.++-+|.+++..+-+.-.+....-.-+.|..|
T Consensus       443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g-----~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~d  517 (571)
T d2ad6a1         443 MGQIRAFDLTTGKAKWTKWEKFAAWGG-----TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK  517 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEESSCCCSB-----CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred             cccEEEeccCCCceeeEcCCCCCCCcc-----eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEEC
Confidence             23445555554444333322221111     112256788889999999999999987766554443333334666668


Q ss_pred             CC-EEEEEE
Q psy3640         553 GK-LVLSGS  560 (616)
Q Consensus       553 g~-~l~s~s  560 (616)
                      |+ |+++..
T Consensus       518 GkqYi~v~~  526 (571)
T d2ad6a1         518 GKQYIGSMY  526 (571)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            86 555543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.00  E-value=0.0016  Score=65.94  Aligned_cols=317  Identities=11%  Similarity=0.074  Sum_probs=170.5

Q ss_pred             CCEEEEEECCCeEEEEeCCCcceeEEeeeceee----------E--EEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q psy3640         283 GDKILTGSFDKTLKLWASAKEECIQTYRGHSAE----------V--TFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKA  350 (616)
Q Consensus       283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----------v--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  350 (616)
                      +..+..++.++.|.-.|.++|+.+-++......          +  .....+..++.++.++.+.-.|..+|+.+.....
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~~  145 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence            457777788899999999999888776422110          0  0111245788889999999999999999887753


Q ss_pred             CCcC-EEEEEEcC--CCCEEEEEEC------CCcEEEEecccccCCccccccccccc----------------CCcceEE
Q psy3640         351 HTGP-VISLQFSS--DRNMLITGSF------DSSIVVWDIQYQFGTRNAYAESTYRA----------------SHKPIHI  405 (616)
Q Consensus       351 ~~~~-v~~l~~~~--~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~~~~----------------~~~~~~~  405 (616)
                      .... -..+.-.|  ....++++..      .|.|.-+|.++....-..........                .......
T Consensus       146 ~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (560)
T d1kv9a2         146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL  225 (560)
T ss_dssp             SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred             cCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccc
Confidence            3211 00111111  1233444332      35677777763321111000000000                0000000


Q ss_pred             EecCccceeEEEEccCCCEEEEEeC-------------------CCcEEEEeCCCCeEEEEeecCCCCE---------EE
Q psy3640         406 LTGHSQEISNCLFNFSNSMIASSSL-------------------DGTAKLWDVRTMCCFYTLKNHEDEV---------LD  457 (616)
Q Consensus       406 ~~~~~~~i~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~v---------~~  457 (616)
                      ..+. ..-....+.+...++..+..                   ...|.-.|+++++....++.....+         .-
T Consensus       226 ~~G~-~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l  304 (560)
T d1kv9a2         226 GGGG-TVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL  304 (560)
T ss_dssp             CEEC-CCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred             cCCC-CcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeee
Confidence            0000 01122445555555554332                   2357778999998887776433211         11


Q ss_pred             EEEcCCC---CEEEEEeCCCcEEEEecCCceeeeeEEeccCCCe--------------------------------eeEE
Q psy3640         458 IAFDYSG---SKLATASSDQTANLWTVGGAVELLQTFYGHSNEV--------------------------------SKVL  502 (616)
Q Consensus       458 l~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------------------------------~~i~  502 (616)
                      .....++   ..++.++.+|.+.++|..++..............                                ..-.
T Consensus       305 ~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~  384 (560)
T d1kv9a2         305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWH  384 (560)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSS
T ss_pred             eeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccc
Confidence            2222233   3566788899999999887755433222111000                                0001


Q ss_pred             EEEEcCCCCEEEEEeCC------------------------------------CcEEEEecCCceEEeEEeeccccCEEE
Q psy3640         503 DIAFDYSGSKLATASSD------------------------------------QTAKLWTVGGAVELLQTFYGHSNEVSK  546 (616)
Q Consensus       503 ~~~~s~~~~~l~~~~~d------------------------------------g~i~vwd~~~~~~~~~~~~~h~~~v~~  546 (616)
                      ..+++|+...+++...+                                    |.+.-+|+.++...-+...+.  +...
T Consensus       385 ~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~--~~~g  462 (560)
T d1kv9a2         385 SMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT--HWNG  462 (560)
T ss_dssp             CCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS--SCCC
T ss_pred             cccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC--CCCC
Confidence            34677777776654422                                    456677777765554433322  2222


Q ss_pred             EEEecCCCEEEEEECCCcEEEecCCcCeeeeEeccCcccE-EEEEEeeCCC-EEEEee
Q psy3640         547 VSFHPTGKLVLSGSQDTTCRLWSTESGECIQVLKAHEDDV-FSCGFNYNGD-TIITAS  602 (616)
Q Consensus       547 l~~spdg~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~V-~~l~~s~~~~-~l~t~s  602 (616)
                      -.++-.+.++++|+.||.++-+|.++|+.+..++...... .-+.+..+|+ +|++.+
T Consensus       463 g~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~a  520 (560)
T d1kv9a2         463 GTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (560)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             ceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence            2233356688899999999999999999998776433211 1245667885 655443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.96  E-value=0.006  Score=61.46  Aligned_cols=300  Identities=13%  Similarity=0.092  Sum_probs=170.4

Q ss_pred             CCCEEEEECCCcEEEEeCCCCceEEEeeCCCC-----------cEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640         240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQN-----------VVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT  308 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~-----------~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  308 (616)
                      ++.+..++.++.|.-.|.++|+.+.++.....           .-..++..   +..++.+..++.+.-.|..+++.+-.
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~g~l~Alda~tG~~~w~  142 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW---GDKVYVGTLDGRLIALDAKTGKAIWS  142 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE---BTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee---CCeEEEEeCCCEEEEEECCCCcEEec
Confidence            56677888899999999999999998742211           01122222   56788899999999999999998877


Q ss_pred             eeeceee----EEEcC--CCCEEEEEeC------CCcEEEEECCCCceeEEeecCC------------------------
Q psy3640         309 YRGHSAE----VTFSP--DQSTFCSCSM------DHTARIFNTNSGQEMHTLKAHT------------------------  352 (616)
Q Consensus       309 ~~~~~~~----v~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~------------------------  352 (616)
                      .......    +.-.|  ....++.+..      .|.|.-+|.++|+.+..+..-.                        
T Consensus       143 ~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (560)
T d1kv9a2         143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY  222 (560)
T ss_dssp             EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred             cCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccc
Confidence            6532211    11111  1233444332      3679999999999998875210                        


Q ss_pred             ------cC-EEEEEEcCCCCEEEEEECCC-------------------cEEEEecccccCCcccccccccccCCcceEEE
Q psy3640         353 ------GP-VISLQFSSDRNMLITGSFDS-------------------SIVVWDIQYQFGTRNAYAESTYRASHKPIHIL  406 (616)
Q Consensus       353 ------~~-v~~l~~~~~~~~l~~g~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (616)
                            .. =..+++.+...++..+..+.                   .|.-.|++                +.+....+
T Consensus       223 ~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~----------------tG~~~W~~  286 (560)
T d1kv9a2         223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD----------------TGKLAWHY  286 (560)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT----------------TCCEEEEE
T ss_pred             ccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCC----------------ccceeEEE
Confidence                  00 11245566666655543221                   12222222                33333222


Q ss_pred             ecCcccee---------EEEEccCC---CEEEEEeCCCcEEEEeCCCCeEEEEeecCCC---------------------
Q psy3640         407 TGHSQEIS---------NCLFNFSN---SMIASSSLDGTAKLWDVRTMCCFYTLKNHED---------------------  453 (616)
Q Consensus       407 ~~~~~~i~---------~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------  453 (616)
                      ......+.         -+....++   ..++.+..+|.+.++|..+++.+...+....                     
T Consensus       287 Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~  366 (560)
T d1kv9a2         287 QVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRY  366 (560)
T ss_dssp             ESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTC
T ss_pred             eccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccc
Confidence            22111111         11122233   3567788899999999999988765432110                     


Q ss_pred             ---C------------EEEEEEcCCCCEEEEEeCC------------------------------------CcEEEEecC
Q psy3640         454 ---E------------VLDIAFDYSGSKLATASSD------------------------------------QTANLWTVG  482 (616)
Q Consensus       454 ---~------------v~~l~~~~~~~~l~~~~~d------------------------------------g~i~iwd~~  482 (616)
                         .            -...+++|+...++....+                                    |.+.-+|+.
T Consensus       367 ~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~  446 (560)
T d1kv9a2         367 EKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV  446 (560)
T ss_dssp             SSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT
T ss_pred             cccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCC
Confidence               0            0134566766666654322                                    345666666


Q ss_pred             CceeeeeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCceEEeEEeeccccCEEEEEEecCCC-EEEEEEC
Q psy3640         483 GAVELLQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGK-LVLSGSQ  561 (616)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~-~l~s~s~  561 (616)
                      +++...+..........     .+.-.+.++++|+.||.++-+|..++..+-+.-.+....-.-+.+..+|+ +|++.+.
T Consensus       447 tGk~~W~~~~~~~~~gg-----~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG  521 (560)
T d1kv9a2         447 KQKAAWKVPYPTHWNGG-----TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG  521 (560)
T ss_dssp             TTEEEEEEEESSSCCCC-----EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred             CCeEeeeccCCCCCCCc-----eeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeC
Confidence            66554443333222111     12335678889999999999999998666554433222222355566875 5655444


Q ss_pred             CC
Q psy3640         562 DT  563 (616)
Q Consensus       562 dg  563 (616)
                      .|
T Consensus       522 ~g  523 (560)
T d1kv9a2         522 WG  523 (560)
T ss_dssp             CC
T ss_pred             CC
Confidence            33

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.94  E-value=0.0079  Score=56.45  Aligned_cols=256  Identities=12%  Similarity=0.103  Sum_probs=151.1

Q ss_pred             EEEEECCCeEEEEeCCCcceeEEee--------------------------------------------eceeeEEEcC-
Q psy3640         286 ILTGSFDKTLKLWASAKEECIQTYR--------------------------------------------GHSAEVTFSP-  320 (616)
Q Consensus       286 l~s~s~dg~i~iwd~~~~~~~~~~~--------------------------------------------~~~~~v~~~~-  320 (616)
                      +.+|+..|.|+++-+.+++.+..+.                                            .|...+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5677778888888777776655542                                            1222334433 


Q ss_pred             --CCCEEEEEe-CCCcEEEEECCCCceeEEeec-CCcCEEEEEEcC--CCCEEEEEECCC------------------cE
Q psy3640         321 --DQSTFCSCS-MDHTARIFNTNSGQEMHTLKA-HTGPVISLQFSS--DRNMLITGSFDS------------------SI  376 (616)
Q Consensus       321 --~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~~--~~~~l~~g~~dg------------------~i  376 (616)
                        ||+++++.. .+++|.+.|+.+.+..+.+.. ....+..+...+  +..+++.++.+.                  .+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              788887776 568899999999987665443 344567776654  556777776632                  13


Q ss_pred             EEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCC---------------cEEEE----
Q psy3640         377 VVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDG---------------TAKLW----  437 (616)
Q Consensus       377 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------------~i~iw----  437 (616)
                      .++|..                +.+...... -......+.++++|+++++.+.+.               .+.++    
T Consensus       176 t~ID~~----------------tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r  238 (459)
T d1fwxa2         176 TAVDAD----------------KWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  238 (459)
T ss_dssp             EEEETT----------------TTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             EEEecC----------------CceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence            444543                222222222 223456788999999998887431               12333    


Q ss_pred             -------------------eCCCC---eEEEEeecCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEecCCceee-------
Q psy3640         438 -------------------DVRTM---CCFYTLKNHEDEVLDIAFDYSGSKLATAS-SDQTANLWTVGGAVEL-------  487 (616)
Q Consensus       438 -------------------d~~~~---~~~~~~~~~~~~v~~l~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-------  487 (616)
                                         |.+..   ..+..+. -......+.++|||+++++++ .+.++.++|+..-...       
T Consensus       239 ie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~  317 (459)
T d1fwxa2         239 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP  317 (459)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-G
T ss_pred             hHHhhhcCCcEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCc
Confidence                               33321   1111121 223356789999999987765 5789999998642111       


Q ss_pred             eeEEeccCCCeeeEEEEEEcCCCCEEEEEeCCCcEEEEecCCc---------eEEeEEeeccccCEEEE------EEecC
Q psy3640         488 LQTFYGHSNEVSKVLDIAFDYSGSKLATASSDQTAKLWTVGGA---------VELLQTFYGHSNEVSKV------SFHPT  552 (616)
Q Consensus       488 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~h~~~v~~l------~~spd  552 (616)
                      .....+.....-.-...+|+..|.-..+-.-|.+|.-|++...         ...+..+.-|-. +-.+      ...||
T Consensus       318 ~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~d  396 (459)
T d1fwxa2         318 RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDAT  396 (459)
T ss_dssp             GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCC
T ss_pred             cccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCC
Confidence            1111122222223356788888876677778999999998421         234444433321 2222      23689


Q ss_pred             CCEEEEEE
Q psy3640         553 GKLVLSGS  560 (616)
Q Consensus       553 g~~l~s~s  560 (616)
                      |++|++..
T Consensus       397 gk~l~~~n  404 (459)
T d1fwxa2         397 NDWLVCLS  404 (459)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEec
Confidence            99999875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.82  E-value=0.0058  Score=61.84  Aligned_cols=308  Identities=13%  Similarity=0.172  Sum_probs=169.6

Q ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEeccC----------CcE-EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640         199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQ----------NVV-YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR  267 (616)
Q Consensus       199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~----------~~I-~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~  267 (616)
                      +..|..++.++.|.-+|.++|+.+-++....          ..+ ..+.+. +++++.++.|+.+.-.|..+|+.+....
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~~g~l~alda~tG~~~W~~~  155 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAWDGRLIALDAATGKEVWHQN  155 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CCcEEEEecccceeeeccccccceeccc
Confidence            3466777888899999999999998775221          011 112222 4557788899999999999999987765


Q ss_pred             CCCCcEEEEEEe-CC--CCCEEEEEEC------CCeEEEEeCCCcceeEEeeece-------------------------
Q psy3640         268 GHQNVVYAVAFS-EP--YGDKILTGSF------DKTLKLWASAKEECIQTYRGHS-------------------------  313 (616)
Q Consensus       268 ~h~~~V~~l~~~-~~--~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~-------------------------  313 (616)
                      ........+... +|  ..+.+++++.      .|.|.-+|..+|+.+-.+....                         
T Consensus       156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~  235 (573)
T d1kb0a2         156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW  235 (573)
T ss_dssp             TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred             CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence            321111000000 00  1455665543      4689999999999887653110                         


Q ss_pred             ----------eeEEEcCCCCEEEEEeCC-------------------CcEEEEECCCCceeEEeecCCc---------CE
Q psy3640         314 ----------AEVTFSPDQSTFCSCSMD-------------------HTARIFNTNSGQEMHTLKAHTG---------PV  355 (616)
Q Consensus       314 ----------~~v~~~~~~~~l~~~~~d-------------------g~i~i~d~~~~~~~~~~~~~~~---------~v  355 (616)
                                ...++.++...++.+...                   ..|...|.++++.....+....         +.
T Consensus       236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~  315 (573)
T d1kb0a2         236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPM  315 (573)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCC
T ss_pred             eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCccccccccccee
Confidence                      113566666666554321                   2466778888888776653221         11


Q ss_pred             EEEEEcCCC---CEEEEEECCCcEEEEecccccCCccccc-----------------ccccccCCcceEEEecCc--cce
Q psy3640         356 ISLQFSSDR---NMLITGSFDSSIVVWDIQYQFGTRNAYA-----------------ESTYRASHKPIHILTGHS--QEI  413 (616)
Q Consensus       356 ~~l~~~~~~---~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~--~~i  413 (616)
                      .......++   ..++.++.+|.+.++|..+.........                 ...............+..  ..-
T Consensus       316 ~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w  395 (573)
T d1kb0a2         316 ILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW  395 (573)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCS
T ss_pred             eecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccc
Confidence            222222233   3567778889999998764321100000                 000000000000000000  001


Q ss_pred             eEEEEccCCCEEEEEeCC-------------------------------------------CcEEEEeCCCCeEEEEeec
Q psy3640         414 SNCLFNFSNSMIASSSLD-------------------------------------------GTAKLWDVRTMCCFYTLKN  450 (616)
Q Consensus       414 ~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~iwd~~~~~~~~~~~~  450 (616)
                      ...+++|+...++....+                                           |.+.-||+.+++.+...+.
T Consensus       396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~  475 (573)
T d1kb0a2         396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH  475 (573)
T ss_dssp             SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE
T ss_pred             cccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecC
Confidence            123455554444432211                                           4578889999988887764


Q ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC
Q psy3640         451 HEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS  511 (616)
Q Consensus       451 ~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  511 (616)
                      .. +...-..+-.+.++++++.||.++.+|..+++.+............+   +.+..+|+
T Consensus       476 ~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~Gk  532 (573)
T d1kb0a2         476 VS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGR  532 (573)
T ss_dssp             SS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTE
T ss_pred             CC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCE
Confidence            32 11111223357788899999999999999997766554443322222   33444665

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.79  E-value=0.015  Score=54.45  Aligned_cols=260  Identities=14%  Similarity=0.108  Sum_probs=153.3

Q ss_pred             EEEEeCCCcEEEEECCCCceeEEeecCC---------------------------------------cC--EEEEEEcC-
Q psy3640         325 FCSCSMDHTARIFNTNSGQEMHTLKAHT---------------------------------------GP--VISLQFSS-  362 (616)
Q Consensus       325 l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------------------------~~--v~~l~~~~-  362 (616)
                      +.+|+..|.++++-+.+++.+..+....                                       +.  =..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            5678888999999998888876654110                                       00  01344443 


Q ss_pred             --CCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEec-CccceeEEEEc--cCCCEEEEEeCC-----
Q psy3640         363 --DRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTG-HSQEISNCLFN--FSNSMIASSSLD-----  431 (616)
Q Consensus       363 --~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~l~~~~~d-----  431 (616)
                        ||+++++.. .+++|.+.|++                ..+....... ....+..+...  |+..+++.++..     
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~----------------~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~p  159 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCD----------------VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLV  159 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETT----------------TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESS
T ss_pred             ccceeEEEEEcCCCceEEEEECc----------------ceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccC
Confidence              678877766 57889999987                4444332222 22334444443  445567766653     


Q ss_pred             -------------CcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCC---------------cEEEEecCC
Q psy3640         432 -------------GTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQ---------------TANLWTVGG  483 (616)
Q Consensus       432 -------------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg---------------~i~iwd~~~  483 (616)
                                   +.+.++|..+.+....+.. .+....+.++++|+++++.+.+.               .+.+++...
T Consensus       160 ndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~r  238 (459)
T d1fwxa2         160 NDGTNMEDVANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE  238 (459)
T ss_dssp             CSSSSTTCGG-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH
T ss_pred             CCCccccchhhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHH
Confidence                         2367889999888777663 34567889999999999887542               133333311


Q ss_pred             ce---------e--eeeEEeccCC---Ce-------eeEEEEEEcCCCCEEEEEeC-CCcEEEEecCCceE---------
Q psy3640         484 AV---------E--LLQTFYGHSN---EV-------SKVLDIAFDYSGSKLATASS-DQTAKLWTVGGAVE---------  532 (616)
Q Consensus       484 ~~---------~--~~~~~~~~~~---~~-------~~i~~~~~s~~~~~l~~~~~-dg~i~vwd~~~~~~---------  532 (616)
                      ..         .  -.........   ..       .....+..+|||+++++++. +..+.|+|++.-..         
T Consensus       239 ie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~  318 (459)
T d1fwxa2         239 IEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  318 (459)
T ss_dssp             HHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GG
T ss_pred             hHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcc
Confidence            00         0  0001111000   00       11235799999999887665 89999999853111         


Q ss_pred             -EeEEeeccccCEEEEEEecCCCEEEEEECCCcEEEecCCcC----------eeeeEeccCcccEEEEE------EeeCC
Q psy3640         533 -LLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTTCRLWSTESG----------ECIQVLKAHEDDVFSCG------FNYNG  595 (616)
Q Consensus       533 -~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~i~iwd~~~~----------~~~~~~~~h~~~V~~l~------~s~~~  595 (616)
                       .+..-....-.....+|..+|.-..|-.-|..|.-|++...          ..+..+..|-. +-.+.      ..|+|
T Consensus       319 ~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dg  397 (459)
T d1fwxa2         319 SAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATN  397 (459)
T ss_dssp             GGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCS
T ss_pred             ccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCC
Confidence             11111112334566788888865556668999999998543          44556655543 22222      25788


Q ss_pred             CEEEEee
Q psy3640         596 DTIITAS  602 (616)
Q Consensus       596 ~~l~t~s  602 (616)
                      ++|++..
T Consensus       398 k~l~~~n  404 (459)
T d1fwxa2         398 DWLVCLS  404 (459)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEec
Confidence            8888765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.77  E-value=0.012  Score=52.30  Aligned_cols=253  Identities=8%  Similarity=0.120  Sum_probs=159.1

Q ss_pred             CcEEEEECCCCcE-EEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEE
Q psy3640         209 RTCKLWDIKSGHE-ICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKIL  287 (616)
Q Consensus       209 g~i~iwd~~~~~~-~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~  287 (616)
                      ..|.|-|+.++.. .+.--.-    -+.-.+|..++++--...++.++|+++.+.+....-. .+|.--.|.  +.+.|+
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~A----dsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~-e~VvfWkWi--s~~~L~  117 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWI--SLNTVA  117 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECCC----SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEES--SSSEEE
T ss_pred             ceEEEEECCCCCcceecccch----hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcC-CCcEEEEec--CCCEEE
Confidence            4788999977653 3222111    1233467777776555789999999999998888744 466666775  345666


Q ss_pred             EEECCCeEEEEeCCCc-ceeEEeeecee----eE---EEcCCCCEEEEEe---C----CCcEEEEECCCCceeEEeecCC
Q psy3640         288 TGSFDKTLKLWASAKE-ECIQTYRGHSA----EV---TFSPDQSTFCSCS---M----DHTARIFNTNSGQEMHTLKAHT  352 (616)
Q Consensus       288 s~s~dg~i~iwd~~~~-~~~~~~~~~~~----~v---~~~~~~~~l~~~~---~----dg~i~i~d~~~~~~~~~~~~~~  352 (616)
                      ..+. ..|.-|+++.. .+.+.+..|..    .+   ..+++.++++..+   .    .|.+.+|..+. +..+.+.+|.
T Consensus       118 lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGha  195 (327)
T d1utca2         118 LVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA  195 (327)
T ss_dssp             EECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred             EEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCcccccee
Confidence            5554 68999999543 45555554432    22   5778888776543   2    36788999874 4566777777


Q ss_pred             cCEEEEEEcCCC---CEEEEEE---CCCcEEEEecccccCCcccccccccccCCcceEEEe---cCccceeEEEEccCCC
Q psy3640         353 GPVISLQFSSDR---NMLITGS---FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILT---GHSQEISNCLFNFSNS  423 (616)
Q Consensus       353 ~~v~~l~~~~~~---~~l~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~  423 (616)
                      +....+.+..+.   +.++.+.   ..+.+++.++.........+       ..+......   ...+--.++..++...
T Consensus       196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f-------~kk~vdi~fppea~~DFPvamqvs~kyg  268 (327)
T d1utca2         196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-------PKKAVDVFFPPEAQNDFPVAMQISEKHD  268 (327)
T ss_dssp             EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC-------CCEEEECCCCTTCTTCCEEEEEEETTTT
T ss_pred             eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC-------cceeEEEECCccccCCcEEEEEeeccCC
Confidence            665555443221   2333332   23678888886432211111       011111111   1133455678888888


Q ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q psy3640         424 MIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTAN  477 (616)
Q Consensus       424 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~  477 (616)
                      .+..-+.-|.+++||+.++.++..-+-....|...+-+.+..-+++...+|.+.
T Consensus       269 iiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         269 VVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            999999999999999999999988887777777666555555555555666554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.77  E-value=0.015  Score=58.65  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=71.6

Q ss_pred             CCCEEEEECCCcEEEEeCCCCceEEEeeCCC----------CcE-EEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640         240 PYGCLTGSYDRTCKLWDIKSGHEICTYRGHQ----------NVV-YAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT  308 (616)
Q Consensus       240 ~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~----------~~V-~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  308 (616)
                      ++.+..++.++.|.-+|.++|+.+.++....          ..+ ..+.+.   ...++.++.|+.+.-.|..+|+.+-.
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE---CCcEEEEecccceeeeccccccceec
Confidence            6667788889999999999999999875321          011 123333   45778888899999999999988765


Q ss_pred             eeec---eeeE--EEcC--CCCEEEEEeC------CCcEEEEECCCCceeEEee
Q psy3640         309 YRGH---SAEV--TFSP--DQSTFCSCSM------DHTARIFNTNSGQEMHTLK  349 (616)
Q Consensus       309 ~~~~---~~~v--~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~  349 (616)
                      ....   ...+  .-.|  .+..+++++.      .|.|..+|.++|+.+..+.
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  207 (573)
T d1kb0a2         154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (573)
T ss_dssp             EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence            5321   1111  1111  2344454432      4679999999999998764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=0.013  Score=52.43  Aligned_cols=234  Identities=9%  Similarity=-0.001  Sum_probs=140.7

Q ss_pred             cEEEEECCCCc-----EEEEEeccCCcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCC
Q psy3640         210 TCKLWDIKSGH-----EICTYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY  282 (616)
Q Consensus       210 ~i~iwd~~~~~-----~~~~~~~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~  282 (616)
                      .|+-.+++...     ....+..+...+..++|......+  +-..++.|+..++..+.....+......+.++++....
T Consensus        11 ~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~   90 (263)
T d1npea_          11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLG   90 (263)
T ss_dssp             EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTT
T ss_pred             eEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccC
Confidence            56555554322     222344455568889998776633  55667889999988776655555545678999998444


Q ss_pred             CCEEEEEECCCeEEEEeCCCcceeEEee---eceeeEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecCCcCEE
Q psy3640         283 GDKILTGSFDKTLKLWASAKEECIQTYR---GHSAEVTFSPDQSTFCSCSMD---HTARIFNTNSGQEMHTLKAHTGPVI  356 (616)
Q Consensus       283 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~  356 (616)
                      +....+-...+.|.+.++..........   .....+++.|...+++.....   +.|.--++............-....
T Consensus        91 ~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~  170 (263)
T d1npea_          91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPN  170 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEE
T ss_pred             CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccc
Confidence            4444455567899999988665433332   234567899988877755433   2354456654433333333335668


Q ss_pred             EEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEE
Q psy3640         357 SLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAK  435 (616)
Q Consensus       357 ~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  435 (616)
                      ++++++.++.|.... ..+.|...++..                ........+... ...+++. ++.+..+-...+.|.
T Consensus       171 glaiD~~~~~lYw~d~~~~~I~~~~~~g----------------~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~  232 (263)
T d1npea_         171 GLTFDAFSSQLCWVDAGTHRAECLNPAQ----------------PGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVI  232 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTE----------------EEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEE
T ss_pred             eEEEeecCcEEEEEeCCCCEEEEEECCC----------------CCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEE
Confidence            999998877776554 567888888752                222222233222 3456664 344444444668899


Q ss_pred             EEeCCCCeEEEEeecC-CCCEEEEEEc
Q psy3640         436 LWDVRTMCCFYTLKNH-EDEVLDIAFD  461 (616)
Q Consensus       436 iwd~~~~~~~~~~~~~-~~~v~~l~~~  461 (616)
                      ..|..+++....+... ......++..
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         233 AMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             EEECCCCccceEECCCCCCCcceEEEe
Confidence            9999888877665432 2334445443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.58  E-value=0.0057  Score=58.39  Aligned_cols=255  Identities=10%  Similarity=0.020  Sum_probs=128.7

Q ss_pred             EEEEECCCCceeE--Ee-ecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         334 ARIFNTNSGQEMH--TL-KAHTGPVISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       334 i~i~d~~~~~~~~--~~-~~~~~~v~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                      +.+||..+++-..  .. ..+.....+.++.+++.+++.|+.+ ..+.+||.....-              .....+.. 
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w--------------~~~~~~~~-  118 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSW--------------IPGPDMQV-  118 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEE--------------EECCCCSS-
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcc--------------cccccccc-
Confidence            6789998775322  11 2233334466788999999988765 5899999863211              11111111 


Q ss_pred             ccceeEEEEccCCCEEEEEeCC------CcEEEEeCCCCeEEEEeecCC--------------CCEEEEEEcCCCCEEEE
Q psy3640         410 SQEISNCLFNFSNSMIASSSLD------GTAKLWDVRTMCCFYTLKNHE--------------DEVLDIAFDYSGSKLAT  469 (616)
Q Consensus       410 ~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~--------------~~v~~l~~~~~~~~l~~  469 (616)
                      ...-...+..+++++++.|+.+      ..+.+||..+.+-...-....              ..-..+...++++.+..
T Consensus       119 ~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  198 (387)
T d1k3ia3         119 ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA  198 (387)
T ss_dssp             CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEEC
T ss_pred             cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEe
Confidence            1122345667789999888753      358999998875432111000              00111223345666666


Q ss_pred             EeCCCcEEEEecCCceeeeeEEecc-----CCCeeeEEEEEEcCCCCEEEEEeCCC--------cEEEEecC---CceEE
Q psy3640         470 ASSDQTANLWTVGGAVELLQTFYGH-----SNEVSKVLDIAFDYSGSKLATASSDQ--------TAKLWTVG---GAVEL  533 (616)
Q Consensus       470 ~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg--------~i~vwd~~---~~~~~  533 (616)
                      +...+.+.+++.....-........     ......-..+.-..+++.++.|+...        ...+.+..   .....
T Consensus       199 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (387)
T d1k3ia3         199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT  278 (387)
T ss_dssp             CSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred             cCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCc
Confidence            6666666677665542211111100     00111111222334666777776422        22333322   11111


Q ss_pred             eEEee--ccccCEEEEEEecCCCEEEEEECC-----------CcEEEecCCcCee--eeEeccCcccEEEEEEeeCCCEE
Q psy3640         534 LQTFY--GHSNEVSKVSFHPTGKLVLSGSQD-----------TTCRLWSTESGEC--IQVLKAHEDDVFSCGFNYNGDTI  598 (616)
Q Consensus       534 ~~~~~--~h~~~v~~l~~spdg~~l~s~s~d-----------g~i~iwd~~~~~~--~~~~~~h~~~V~~l~~s~~~~~l  598 (616)
                      .....  .+...-.+....+||++++.|+.+           .++.+||.++.+-  +..+......=......+||+.+
T Consensus       279 ~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~  358 (387)
T d1k3ia3         279 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVF  358 (387)
T ss_dssp             EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEE
T ss_pred             eeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEE
Confidence            11111  111122345556899999998843           1478899877642  22221111000123357899999


Q ss_pred             EEeeC
Q psy3640         599 ITASK  603 (616)
Q Consensus       599 ~t~s~  603 (616)
                      +.|+.
T Consensus       359 v~GG~  363 (387)
T d1k3ia3         359 NGGGG  363 (387)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99884

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.55  E-value=0.057  Score=54.33  Aligned_cols=312  Identities=13%  Similarity=0.094  Sum_probs=169.8

Q ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEeccC--------CcE-EEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeC-
Q psy3640         199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQ--------NVV-YAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRG-  268 (616)
Q Consensus       199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~--------~~I-~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~-  268 (616)
                      +..|.+++.++.|.=.|.++|+.+-++....        ..+ ..+++. +++++.++.++.+.-.|..+|+.+..... 
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~-~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY-GDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE-TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe-CCceEEecCCCeEEEecccccceeeeeccc
Confidence            4577788889999999999999998774221        011 112222 45677899999999999999998865431 


Q ss_pred             -CC-----CcEEEEEEeCCCCCEEEEE-------ECCCeEEEEeCCCcceeEEeeece----------------------
Q psy3640         269 -HQ-----NVVYAVAFSEPYGDKILTG-------SFDKTLKLWASAKEECIQTYRGHS----------------------  313 (616)
Q Consensus       269 -h~-----~~V~~l~~~~~~~~~l~s~-------s~dg~i~iwd~~~~~~~~~~~~~~----------------------  313 (616)
                       +.     ..-..+.-.......++..       +..+.|.-+|..+|+.+-++....                      
T Consensus       147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~  226 (582)
T d1flga_         147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence             10     0000111111123333333       234678888888888766543210                      


Q ss_pred             ----------------------eeEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCceeEE
Q psy3640         314 ----------------------AEVTFSPDQSTFCSCSM------------------------DHTARIFNTNSGQEMHT  347 (616)
Q Consensus       314 ----------------------~~v~~~~~~~~l~~~~~------------------------dg~i~i~d~~~~~~~~~  347 (616)
                                            ..+++.+...+++.+..                        ...+...|..+++....
T Consensus       227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~  306 (582)
T d1flga_         227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence                                  11367777777776542                        12467778899998877


Q ss_pred             eecCCcC---------EEEEEEc-CCCC---EEEEEECCCcEEEEecccccCCcc-------ccccccc-----------
Q psy3640         348 LKAHTGP---------VISLQFS-SDRN---MLITGSFDSSIVVWDIQYQFGTRN-------AYAESTY-----------  396 (616)
Q Consensus       348 ~~~~~~~---------v~~l~~~-~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-------~~~~~~~-----------  396 (616)
                      ++.....         ..-+.+. .++.   .++.++.++.+.+.|.........       .......           
T Consensus       307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~  386 (582)
T d1flga_         307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREG  386 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTT
T ss_pred             ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCccccccccccccccceeccc
Confidence            7532211         1111221 1222   455667777888777654321000       0000000           


Q ss_pred             ---------ccCCcceEEEecC--ccceeEEEEccCCCEEEEEeC---------------------------------CC
Q psy3640         397 ---------RASHKPIHILTGH--SQEISNCLFNFSNSMIASSSL---------------------------------DG  432 (616)
Q Consensus       397 ---------~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~---------------------------------dg  432 (616)
                               ...........+.  ...-...+++|+...+.....                                 .|
T Consensus       387 ~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G  466 (582)
T d1flga_         387 QRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVG  466 (582)
T ss_dssp             CSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSE
T ss_pred             cccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCCC
Confidence                     0000001111110  011122344444443332221                                 26


Q ss_pred             cEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeCCCcEEEEecCCceeeeeEEeccCCCeeeEEEEEEcCCCC-
Q psy3640         433 TAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASSDQTANLWTVGGAVELLQTFYGHSNEVSKVLDIAFDYSGS-  511 (616)
Q Consensus       433 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-  511 (616)
                      .+.-+|+.+++......... ++.+-..+..+.++++++.||.++.+|..+++.+............+   +.+..+|+ 
T Consensus       467 ~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G~q  542 (582)
T d1flga_         467 SLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQDGEQ  542 (582)
T ss_dssp             EEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEE
T ss_pred             eEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEE
Confidence            78889999998888776432 22221223456788899999999999999997776655544433333   35556775 


Q ss_pred             EEEE
Q psy3640         512 KLAT  515 (616)
Q Consensus       512 ~l~~  515 (616)
                      |+++
T Consensus       543 Yv~i  546 (582)
T d1flga_         543 YLGV  546 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.032  Score=49.78  Aligned_cols=238  Identities=11%  Similarity=0.037  Sum_probs=141.3

Q ss_pred             CCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEecccccCCcccccccccccCCcceEEEecC
Q psy3640         331 DHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGS-FDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH  409 (616)
Q Consensus       331 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (616)
                      ...|+..++.+......+. ....+.+++|++..+.+.-.. ..+.|...++.....            ...........
T Consensus         9 ~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~------------~~~~~~~~~~~   75 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------------VSSYDTVISRD   75 (266)
T ss_dssp             BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------------------CEEEECSS
T ss_pred             CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCC------------CcceEEEEeCC
Confidence            3458888887655444333 556778999998877776654 455566555531100            11222233333


Q ss_pred             ccceeEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEecCCcee
Q psy3640         410 SQEISNCLFNFSNSMIASS-SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATASS--DQTANLWTVGGAVE  486 (616)
Q Consensus       410 ~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~~--dg~i~iwd~~~~~~  486 (616)
                      ...+..+++.+.+..|..+ ...+.|.+.++........+.........++++|...+|.....  .+.|.-.++.....
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~  155 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI  155 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce
Confidence            4556788888766655555 45578999998876655555555677899999997666665543  34566666654322


Q ss_pred             eeeEEeccCCCeeeEEEEEEcCCCCEEEEE-eCCCcEEEEecCCce-EEeEEeeccccCEEEEEEecCCCEEEEEECCCc
Q psy3640         487 LLQTFYGHSNEVSKVLDIAFDYSGSKLATA-SSDQTAKLWTVGGAV-ELLQTFYGHSNEVSKVSFHPTGKLVLSGSQDTT  564 (616)
Q Consensus       487 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~vwd~~~~~-~~~~~~~~h~~~v~~l~~spdg~~l~s~s~dg~  564 (616)
                        ..+..  ........+++++.++.|..+ ...+.|...++.+.. ..+............+++.. +.+..+-..++.
T Consensus       156 --~~l~~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~  230 (266)
T d1ijqa1         156 --YSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEA  230 (266)
T ss_dssp             --EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTE
T ss_pred             --ecccc--cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CEEEEEECCCCe
Confidence              22221  122335678999988877666 456888988987642 22222222223456777763 333344346678


Q ss_pred             EEEecCCcCeeeeEeccCcccE
Q psy3640         565 CRLWSTESGECIQVLKAHEDDV  586 (616)
Q Consensus       565 i~iwd~~~~~~~~~~~~h~~~V  586 (616)
                      |...+..+|+....+......+
T Consensus       231 I~~~~~~~g~~~~~~~~~~~~p  252 (266)
T d1ijqa1         231 IFSANRLTGSDVNLLAENLLSP  252 (266)
T ss_dssp             EEEEETTTCCCCEEEECSCSCC
T ss_pred             EEEEECCCCcceEEEEcCCCCc
Confidence            8888877887766665444333

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.44  E-value=0.03  Score=53.12  Aligned_cols=274  Identities=11%  Similarity=0.047  Sum_probs=140.0

Q ss_pred             eCCCCCEEEEEECCC-----------eEEEEeCCCcceeEE--eee-c---eeeEEEcCCCCEEEEEeCC-CcEEEEECC
Q psy3640         279 SEPYGDKILTGSFDK-----------TLKLWASAKEECIQT--YRG-H---SAEVTFSPDQSTFCSCSMD-HTARIFNTN  340 (616)
Q Consensus       279 ~~~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~--~~~-~---~~~v~~~~~~~~l~~~~~d-g~i~i~d~~  340 (616)
                      .+.+++.++.|+.+.           .+.+||..+++....  ... +   ....++.+++..++.|+.+ ..+.+||..
T Consensus        27 ~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          27 EPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             ETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGG
T ss_pred             EeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCc
Confidence            346778888877531           367899998865432  211 1   2245788999999988765 579999998


Q ss_pred             CCceeEEeec-CCcCEEEEEEcCCCCEEEEEECC------CcEEEEecccccCCcccccccccccCCcceEEEecC----
Q psy3640         341 SGQEMHTLKA-HTGPVISLQFSSDRNMLITGSFD------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH----  409 (616)
Q Consensus       341 ~~~~~~~~~~-~~~~v~~l~~~~~~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  409 (616)
                      +..-...-.. ....-.+.+..+||++++.|+.+      ..+.+||.....-.....       ..........+    
T Consensus       107 ~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~-------~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPN-------AKVNPMLTADKQGLY  179 (387)
T ss_dssp             GTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETT-------SCSGGGCCCCTTGGG
T ss_pred             cCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCC-------Cccccccccccccee
Confidence            7654322111 11223456777899999888753      358889876431100000       00000000000    


Q ss_pred             -ccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeec------CC--CCEEEEEE-cCCCCEEEEEeCCC-----
Q psy3640         410 -SQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKN------HE--DEVLDIAF-DYSGSKLATASSDQ-----  474 (616)
Q Consensus       410 -~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~--~~v~~l~~-~~~~~~l~~~~~dg-----  474 (616)
                       ...-..+...++++.+..+...+.+.+++..+.........      +.  ..-.++.+ ..+++.++.++...     
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~  259 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  259 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence             00111123345677777777777788888877654332111      00  01122222 23556666665321     


Q ss_pred             ---cEEEEecCCceeeeeEEe--ccCCCeeeEEEEEEcCCCCEEEEEeCC-----------CcEEEEecCCceEEeEEee
Q psy3640         475 ---TANLWTVGGAVELLQTFY--GHSNEVSKVLDIAFDYSGSKLATASSD-----------QTAKLWTVGGAVELLQTFY  538 (616)
Q Consensus       475 ---~i~iwd~~~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~  538 (616)
                         ...+.+............  ........-.+....++++.+++|+.+           ..+.+||..+..  ...+.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~--W~~~~  337 (387)
T d1k3ia3         260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQN  337 (387)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECC
T ss_pred             ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCe--EEECC
Confidence               223333322111111111  111111122345666899999998853           147889986531  11111


Q ss_pred             ccc-cC--EEEEEEecCCCEEEEEEC
Q psy3640         539 GHS-NE--VSKVSFHPTGKLVLSGSQ  561 (616)
Q Consensus       539 ~h~-~~--v~~l~~spdg~~l~s~s~  561 (616)
                      ... .+  -....+.+||+.++.|+.
T Consensus       338 ~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         338 PNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEEECCCCEEEEEeCC
Confidence            111 11  123345789999999874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.38  E-value=0.029  Score=56.58  Aligned_cols=201  Identities=11%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             EEEECCCeEEEEeC-CCcceeEEeeec--------------eeeEEEcCC----CCEEEEEeCCCcEEEEECCCCceeEE
Q psy3640         287 LTGSFDKTLKLWAS-AKEECIQTYRGH--------------SAEVTFSPD----QSTFCSCSMDHTARIFNTNSGQEMHT  347 (616)
Q Consensus       287 ~s~s~dg~i~iwd~-~~~~~~~~~~~~--------------~~~v~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~  347 (616)
                      ++++.++.+...|. .+|+.+-++...              ...+++.++    ...++.++.|+.|.-.|.++|+.+..
T Consensus        67 ~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~  146 (596)
T d1w6sa_          67 IHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK  146 (596)
T ss_dssp             EECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceecc
Confidence            33444566666665 467666555311              122344332    34788999999999999999999988


Q ss_pred             eecCCcCE-EEEEEcC--CCCEEEEEEC------CCcEEEEecccccCCcccccccc---------------cc------
Q psy3640         348 LKAHTGPV-ISLQFSS--DRNMLITGSF------DSSIVVWDIQYQFGTRNAYAEST---------------YR------  397 (616)
Q Consensus       348 ~~~~~~~v-~~l~~~~--~~~~l~~g~~------dg~i~iwd~~~~~~~~~~~~~~~---------------~~------  397 (616)
                      +....... ..+.-.|  -+..+++|..      .|.|+-+|..+....-.......               ..      
T Consensus       147 ~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~  226 (596)
T d1w6sa_         147 VENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLG  226 (596)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHH
T ss_pred             ccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccc
Confidence            75321100 0111111  1345666543      47888888874332111000000               00      


Q ss_pred             -cCCcceEEEecCccceeEEEEccCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEeecCCC-------
Q psy3640         398 -ASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD----------------GTAKLWDVRTMCCFYTLKNHED-------  453 (616)
Q Consensus       398 -~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~-------  453 (616)
                       ..........+....-..+.+.+...++..+..+                ..+.-.|+++++....++....       
T Consensus       227 ~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~  306 (596)
T d1w6sa_         227 TGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAG  306 (596)
T ss_dssp             HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred             cccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCcc
Confidence             0000000000111111234455666666555432                3477889999998887764221       


Q ss_pred             --CEEEEE-EcCCC---CEEEEEeCCCcEEEEecCCceee
Q psy3640         454 --EVLDIA-FDYSG---SKLATASSDQTANLWTVGGAVEL  487 (616)
Q Consensus       454 --~v~~l~-~~~~~---~~l~~~~~dg~i~iwd~~~~~~~  487 (616)
                        ...-+. ...+|   ..++....+|.+.++|..++..+
T Consensus       307 ~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i  346 (596)
T d1w6sa_         307 VNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (596)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccceeeeeccccccccccceeccccccceeeecCCCCcee
Confidence              111111 22344   35777889999999999887544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.045  Score=48.71  Aligned_cols=228  Identities=8%  Similarity=-0.065  Sum_probs=134.1

Q ss_pred             EEEEECCCcEEEEeCCCCc-----eEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEee---ecee
Q psy3640         243 CLTGSYDRTCKLWDIKSGH-----EICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYR---GHSA  314 (616)
Q Consensus       243 lls~s~d~~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~  314 (616)
                      +|.-+..+.|+-.+++...     ....+..+...+.+++|...++..+.+-..++.|+..++..........   ....
T Consensus         3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~   82 (263)
T d1npea_           3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE   82 (263)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred             EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc
Confidence            3444444566666654332     1223334445688899984434444444556788888887665544443   2345


Q ss_pred             eEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEecccccCCccccc
Q psy3640         315 EVTFSPDQSTFCSC-SMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD-SSIVVWDIQYQFGTRNAYA  392 (616)
Q Consensus       315 ~v~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~  392 (616)
                      .+++..-+..|..+ ...+.|.+.++........+.........++++|...++...... +..+|+.....        
T Consensus        83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d--------  154 (263)
T d1npea_          83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD--------  154 (263)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT--------
T ss_pred             EEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCC--------
Confidence            67888766666644 456789999987655433333334678899999977776655432 33345543311        


Q ss_pred             ccccccCCcceEEEecCccceeEEEEccCCCEEEEE-eCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCCEEEEEe
Q psy3640         393 ESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASS-SLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGSKLATAS  471 (616)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~~~  471 (616)
                            ...........-.....+++.+.++.|..+ ...+.|...|+........+.+. ....++++. .+....+-.
T Consensus       155 ------G~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~  226 (263)
T d1npea_         155 ------GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDW  226 (263)
T ss_dssp             ------SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEET
T ss_pred             ------CCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEEC
Confidence                  122222222333456789998887777555 45678999998765544444433 345678876 333444444


Q ss_pred             CCCcEEEEecCCcee
Q psy3640         472 SDQTANLWTVGGAVE  486 (616)
Q Consensus       472 ~dg~i~iwd~~~~~~  486 (616)
                      ..+.|...|..++..
T Consensus       227 ~~~~I~~~~~~~g~~  241 (263)
T d1npea_         227 KTNSVIAMDLAISKE  241 (263)
T ss_dssp             TTTEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCcc
Confidence            667888888876643

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.086  Score=46.85  Aligned_cols=223  Identities=9%  Similarity=-0.061  Sum_probs=130.7

Q ss_pred             cEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEE--EEECCCcEEEEeCCCCc----eEEEeeCCCCcEEEEEEeCCCC
Q psy3640         210 TCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCL--TGSYDRTCKLWDIKSGH----EICTYRGHQNVVYAVAFSEPYG  283 (616)
Q Consensus       210 ~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~ll--s~s~d~~I~iwd~~~~~----~~~~~~~h~~~V~~l~~~~~~~  283 (616)
                      .|+-.++.+......+ .....+.+++|.+....+  +-...+.|.--++....    ....+......+..+++....+
T Consensus        11 ~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~   89 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS   89 (266)
T ss_dssp             SEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred             eEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence            5888888776554433 355667899998877644  44466777777764321    2222333345567888874455


Q ss_pred             CEEEEEECCCeEEEEeCCCcceeEEeee---ceeeEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEeecCCcCEEEE
Q psy3640         284 DKILTGSFDKTLKLWASAKEECIQTYRG---HSAEVTFSPDQSTFCSCSM--DHTARIFNTNSGQEMHTLKAHTGPVISL  358 (616)
Q Consensus       284 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l  358 (616)
                      +...+-...+.|.+.++...........   ....+++.|...++.....  .+.|.-.++............-....++
T Consensus        90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl  169 (266)
T d1ijqa1          90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI  169 (266)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEE
T ss_pred             eEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEE
Confidence            5555556678899999887665444432   3456788887776665543  3457777776444333333334567899


Q ss_pred             EEcCCCCEEEEE-ECCCcEEEEecccccCCcccccccccccCCcceEEEecC--ccceeEEEEccCCCEEEEEeCCCcEE
Q psy3640         359 QFSSDRNMLITG-SFDSSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGH--SQEISNCLFNFSNSMIASSSLDGTAK  435 (616)
Q Consensus       359 ~~~~~~~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~  435 (616)
                      ++++.++.|..+ ...+.|...++.                ...........  ......+++. .+.+..+-..++.|.
T Consensus       170 ~iD~~~~~lYw~d~~~~~I~~~~~d----------------G~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~  232 (266)
T d1ijqa1         170 TLDLLSGRLYWVDSKLHSISSIDVN----------------GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF  232 (266)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETT----------------SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred             EeeccccEEEEecCCcCEEEEEECC----------------CCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEE
Confidence            999887766665 446788888875                22222222222  2233455554 233344434567777


Q ss_pred             EEeCCCCeEEEEeec
Q psy3640         436 LWDVRTMCCFYTLKN  450 (616)
Q Consensus       436 iwd~~~~~~~~~~~~  450 (616)
                      ..+..++.....+..
T Consensus       233 ~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         233 SANRLTGSDVNLLAE  247 (266)
T ss_dssp             EEETTTCCCCEEEEC
T ss_pred             EEECCCCcceEEEEc
Confidence            777777655554443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.80  E-value=0.24  Score=47.37  Aligned_cols=240  Identities=13%  Similarity=0.122  Sum_probs=123.4

Q ss_pred             cCCcceEEEEECCCCCEEEEE-ECC----CcEEEEECCCCcEEEE-EeccCCcEEEEEEcCCCCEE-EEEC---------
Q psy3640         185 SHLLPLTNITFDKFGTRCLTG-SYD----RTCKLWDIKSGHEICT-YRGHQNVVYAVAFSEPYGCL-TGSY---------  248 (616)
Q Consensus       185 ~h~~~i~~v~~s~~g~~lasg-s~d----g~i~iwd~~~~~~~~~-~~~h~~~I~~l~fs~~~~ll-s~s~---------  248 (616)
                      ++.-.+..+++||+|+++|.+ +.+    ..+++.|+++++.+.. +..  .....++|.+|+..+ -...         
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccc
Confidence            444556677899999999854 333    3699999999987652 221  122568899999844 2221         


Q ss_pred             -------CCcEEEEeCCCCce--EEEeeCCC--CcEEEEEEeCCCCCEEEEEEC---CCeEEEE--eCCCcc--------
Q psy3640         249 -------DRTCKLWDIKSGHE--ICTYRGHQ--NVVYAVAFSEPYGDKILTGSF---DKTLKLW--ASAKEE--------  304 (616)
Q Consensus       249 -------d~~I~iwd~~~~~~--~~~~~~h~--~~V~~l~~~~~~~~~l~s~s~---dg~i~iw--d~~~~~--------  304 (616)
                             ...|..|.+.+...  ...+....  ..+..+..+ .++++++....   +....+|  ++....        
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s-~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  278 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK  278 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeecc-CCcceeeEEeeccCCccEEEEEeeCCCcccccccccc
Confidence                   23588888877642  33444333  346666676 77888764432   3334444  433221        


Q ss_pred             eeEEeeeceeeEE-EcCCCCEEEEEe----CCCcEEEEECCCCce--eEEe-ecCCcCEEEEEEcCCCCEEEEE-ECCC-
Q psy3640         305 CIQTYRGHSAEVT-FSPDQSTFCSCS----MDHTARIFNTNSGQE--MHTL-KAHTGPVISLQFSSDRNMLITG-SFDS-  374 (616)
Q Consensus       305 ~~~~~~~~~~~v~-~~~~~~~l~~~~----~dg~i~i~d~~~~~~--~~~~-~~~~~~v~~l~~~~~~~~l~~g-~~dg-  374 (616)
                      ............. +...+..+..-+    .++.|...++.....  ...+ ..+...+..-.+...+++|+.. ..++ 
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~  358 (430)
T d1qfma1         279 WVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK  358 (430)
T ss_dssp             CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred             eeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence            1111211111111 112333333322    235666667665432  2233 3344445443444344555544 3454 


Q ss_pred             -cEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCC----CcEEEEeCCCCe
Q psy3640         375 -SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLD----GTAKLWDVRTMC  443 (616)
Q Consensus       375 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~  443 (616)
                       .|++++..                ............+.+..+...++...+....++    .++.-+|+.+++
T Consensus       359 ~~l~v~~~~----------------~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         359 NTLQLHDLA----------------TGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEEEETT----------------TCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             eEEEEEECC----------------CCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence             46777775                222222233333344444444444444433322    567888887764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.57  E-value=0.35  Score=46.20  Aligned_cols=240  Identities=9%  Similarity=0.042  Sum_probs=125.2

Q ss_pred             EEEEEEcCCCCEEEEEE-CC----CcEEEEecccccCCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEe
Q psy3640         355 VISLQFSSDRNMLITGS-FD----SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSS  429 (616)
Q Consensus       355 v~~l~~~~~~~~l~~g~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  429 (616)
                      +...+++|++++++.+- .+    ..++++|+.                ++..+.... .......++|.++++.|+-..
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~----------------tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD----------------GAKELPDVL-ERVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETT----------------TTEEEEEEE-EEECSCCEEECTTSSEEEEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccC----------------cceeccccc-ccccccceEEcCCCCEEEEEE
Confidence            44567899999887543 23    368999997                333332111 112235688999999887654


Q ss_pred             CC----------------CcEEEEeCCCCeE--EEEeecC--CCCEEEEEEcCCCCEEEEEeC---CCcEEEE--ecCCc
Q psy3640         430 LD----------------GTAKLWDVRTMCC--FYTLKNH--EDEVLDIAFDYSGSKLATASS---DQTANLW--TVGGA  484 (616)
Q Consensus       430 ~d----------------g~i~iwd~~~~~~--~~~~~~~--~~~v~~l~~~~~~~~l~~~~~---dg~i~iw--d~~~~  484 (616)
                      .+                ..+..+.+.+...  ...+...  ...+..+..++++++++....   ++...+|  ++...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~  269 (430)
T d1qfma1         190 YPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQE  269 (430)
T ss_dssp             CCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGS
T ss_pred             eccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCc
Confidence            32                2577777766422  2233322  335677888999998775432   2333444  43321


Q ss_pred             eee-------eeEEeccCCCeeeEEEEEEcCCCCEEEEEeC---CCcEEEEecCCce-EEeEEee-ccccCEEEEEEecC
Q psy3640         485 VEL-------LQTFYGHSNEVSKVLDIAFDYSGSKLATASS---DQTAKLWTVGGAV-ELLQTFY-GHSNEVSKVSFHPT  552 (616)
Q Consensus       485 ~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~-~~~~~~~-~h~~~v~~l~~spd  552 (616)
                      ...       ..........   . ....+.++.+++....   ++.+...++.... .....+. .+...+..-.++..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~  345 (430)
T d1qfma1         270 SNGITGILKWVKLIDNFEGE---Y-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR  345 (430)
T ss_dssp             SSSSCSSCCCEEEECSSSSC---E-EEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEET
T ss_pred             ccccccccceeEeecccccc---e-EEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEE
Confidence            110       1111111111   1 1111222233333322   3556556654421 1112233 34445555555555


Q ss_pred             CCEEEEEE-CCC--cEEEecCCcCeeeeEeccCcccEEEEEEeeCCCEEEEeeCC----CcEEEcccCCC
Q psy3640         553 GKLVLSGS-QDT--TCRLWSTESGECIQVLKAHEDDVFSCGFNYNGDTIITASKD----NTCCIWRSMNR  615 (616)
Q Consensus       553 g~~l~s~s-~dg--~i~iwd~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~t~s~D----g~i~vW~~~~~  615 (616)
                      +.+|+... .++  .|++++..+++.........+.|..+...++...+...-.+    .++.-+|+.++
T Consensus       346 ~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~  415 (430)
T d1qfma1         346 SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE  415 (430)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred             CCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCC
Confidence            55666554 554  48889998887766555555666665555555544332222    67888887765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.37  E-value=0.98  Score=41.19  Aligned_cols=206  Identities=12%  Similarity=0.199  Sum_probs=112.2

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEc------CCCCEEEEEEC--C--CcEEEEecccccCCcc
Q psy3640         320 PDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFS------SDRNMLITGSF--D--SSIVVWDIQYQFGTRN  389 (616)
Q Consensus       320 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~------~~~~~l~~g~~--d--g~i~iwd~~~~~~~~~  389 (616)
                      |+..+++.....+-|++||+. |+.+..+.  .+.+..+..-      ....-+++++.  +  .+|.+|.+........
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            355677776777779999985 77777664  3555555443      22223555552  2  3577887752111000


Q ss_pred             cccccccccCCcceEEEecCccceeEEEE--ccC-CC-EEEEEeCCCcEEEEeC---CCC----eEEEEeecCCCCEEEE
Q psy3640         390 AYAESTYRASHKPIHILTGHSQEISNCLF--NFS-NS-MIASSSLDGTAKLWDV---RTM----CCFYTLKNHEDEVLDI  458 (616)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~l~~~~~dg~i~iwd~---~~~----~~~~~~~~~~~~v~~l  458 (616)
                      ..     .....+   .......+..+|+  ++. +. ++++...+|.+..|.+   ..+    +.++.+. ....+..+
T Consensus       115 ~~-----~~~~~p---~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGC  185 (353)
T d1h6la_         115 SI-----TDPNRP---IASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGM  185 (353)
T ss_dssp             EC-----SCSSSC---EECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEE
T ss_pred             cc-----cccccc---cccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceE
Confidence            00     000000   0111223556666  554 43 5666777888888865   233    3444554 45679999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEecCCceee---eeEEeccCCCeeeEEEEEEc--CCCC-EEEEEe-CCCcEEEEecCCce
Q psy3640         459 AFDYSGSKLATASSDQTANLWTVGGAVEL---LQTFYGHSNEVSKVLDIAFD--YSGS-KLATAS-SDQTAKLWTVGGAV  531 (616)
Q Consensus       459 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~i~~~~~s--~~~~-~l~~~~-~dg~i~vwd~~~~~  531 (616)
                      .++.....|+.+-++..+..++.......   .........-...+..+++-  .++. +|++.+ .+++..+||.....
T Consensus       186 VvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         186 AADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             EEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             EEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            99999999999988877766665422111   11111111122334444433  3333 554444 57889999987654


Q ss_pred             EEeEEe
Q psy3640         532 ELLQTF  537 (616)
Q Consensus       532 ~~~~~~  537 (616)
                      ..+..+
T Consensus       266 ~~~g~F  271 (353)
T d1h6la_         266 KYVADF  271 (353)
T ss_dssp             CEEEEE
T ss_pred             cccceE
Confidence            444443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.13  E-value=0.54  Score=43.52  Aligned_cols=175  Identities=11%  Similarity=0.050  Sum_probs=102.9

Q ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCC---------CcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCC
Q psy3640         189 PLTNITFDKFGTRCLTGSYDRTCKLWDIKS---------GHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKS  259 (616)
Q Consensus       189 ~i~~v~~s~~g~~lasgs~dg~i~iwd~~~---------~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~  259 (616)
                      ...-+++++...++++|+.++ ++|-.++.         .......+..-..|..++|+.+  .++...++.+..++..+
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~~~~~l~~~~~~~  114 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVSTRNALYSLDLEE  114 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEEESSEEEEEESSS
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEEeCCCEEEEEeec
Confidence            456788888888999888885 66766321         1111111112246899999755  46556677888888877


Q ss_pred             CceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEe--------eeceeeEEEcCCCCEEEEEeCC
Q psy3640         260 GHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTY--------RGHSAEVTFSPDQSTFCSCSMD  331 (616)
Q Consensus       260 ~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~~l~~~~~d  331 (616)
                      -........-..++.++.++   ...++....++.+.++++..++.....        .+....++|++.+..++++..+
T Consensus       115 l~~~~~~~~~~~~~~~~~~~---p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~  191 (381)
T d1xipa_         115 LSEFRTVTSFEKPVFQLKNV---NNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG  191 (381)
T ss_dssp             TTCEEEEEECSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred             cccccccccccccccceecC---CceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence            65555555556778888877   356778888999999999888643322        2333344566666666655322


Q ss_pred             CcEEE-EECCCCceeEEeecCCcCEEEEEEcCCCCEEEEE
Q psy3640         332 HTARI-FNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITG  370 (616)
Q Consensus       332 g~i~i-~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g  370 (616)
                      + ..+ -++.....+.........|.++.|-.+..++++-
T Consensus       192 ~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         192 E-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             E-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             c-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            1 111 0111111000001123468899998765555543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.26  E-value=1.9  Score=39.17  Aligned_cols=181  Identities=10%  Similarity=0.090  Sum_probs=100.4

Q ss_pred             eEEEEECCCCCEEEEEEC------------CCcEEEEECCCCcEE-EEE--eccC-----CcEEEEEE--cCCCC--EEE
Q psy3640         190 LTNITFDKFGTRCLTGSY------------DRTCKLWDIKSGHEI-CTY--RGHQ-----NVVYAVAF--SEPYG--CLT  245 (616)
Q Consensus       190 i~~v~~s~~g~~lasgs~------------dg~i~iwd~~~~~~~-~~~--~~h~-----~~I~~l~f--s~~~~--lls  245 (616)
                      --.++..|+|..+++++.            .|.|.++|+++.+.. ..+  .+..     -....+..  .++++  +++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            346888999987776542            488999998765332 122  2111     11233332  45565  334


Q ss_pred             EE---CCCcEEEEeCCCCce-E---EEee-CCCCcEEEEEEeCCCCCEEEEEE-----------------CCCeEEEEeC
Q psy3640         246 GS---YDRTCKLWDIKSGHE-I---CTYR-GHQNVVYAVAFSEPYGDKILTGS-----------------FDKTLKLWAS  300 (616)
Q Consensus       246 ~s---~d~~I~iwd~~~~~~-~---~~~~-~h~~~V~~l~~~~~~~~~l~s~s-----------------~dg~i~iwd~  300 (616)
                      ..   ...+|.++++..... +   .++. ......+.+++. .++..++|-.                 ..+.+.-||.
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~-~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe-cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            32   456788888754432 1   2222 223457888888 6677777621                 1123444444


Q ss_pred             CCcceeEEeeeceeeEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEe--ecCCcCEEEEEEcCCCCEEEEEE
Q psy3640         301 AKEECIQTYRGHSAEVTFSPDQSTFCSC-SMDHTARIFNTNSGQEMHTL--KAHTGPVISLQFSSDRNMLITGS  371 (616)
Q Consensus       301 ~~~~~~~~~~~~~~~v~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~~~~~~l~~g~  371 (616)
                      ...+.+..--.....++++|++++++++ +..+.|+.|++.....+...  ..-....-.+.+.+++..+.+++
T Consensus       196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            3333333223445678999999877655 45688999998754332221  12344567788876443344444

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.14  E-value=2  Score=39.02  Aligned_cols=191  Identities=12%  Similarity=0.222  Sum_probs=110.5

Q ss_pred             cCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcC------CCCEEEEEe-C-C--CcEEEEecCCceeeee
Q psy3640         420 FSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDY------SGSKLATAS-S-D--QTANLWTVGGAVELLQ  489 (616)
Q Consensus       420 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~------~~~~l~~~~-~-d--g~i~iwd~~~~~~~~~  489 (616)
                      |+..+++.....+-+++||+. |+.+..+.  .+.++.+..-.      ...-+++++ . +  .+|.+|.+........
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            345677777777779999985 77776654  45666654332      222344444 2 2  3577887754322222


Q ss_pred             EEeccCCC----eeeEEEEEE--cCC-CC-EEEEEeCCCcEEEEecC---Cc---eEEeEEeeccccCEEEEEEecCCCE
Q psy3640         490 TFYGHSNE----VSKVLDIAF--DYS-GS-KLATASSDQTAKLWTVG---GA---VELLQTFYGHSNEVSKVSFHPTGKL  555 (616)
Q Consensus       490 ~~~~~~~~----~~~i~~~~~--s~~-~~-~l~~~~~dg~i~vwd~~---~~---~~~~~~~~~h~~~v~~l~~spdg~~  555 (616)
                      .+.....+    ...+..+|+  ++. +. ++++...+|.+..|.+.   .+   ...++.+. -...+-.+.+.+....
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~  193 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGS  193 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCc
Confidence            22221111    122445555  664 44 56667778999888762   21   23344443 3467889999999899


Q ss_pred             EEEEECCCcEEEecCC--c---CeeeeEecc--CcccEEEEEEee--CCC-EE-EEeeCCCcEEEcccCC
Q psy3640         556 VLSGSQDTTCRLWSTE--S---GECIQVLKA--HEDDVFSCGFNY--NGD-TI-ITASKDNTCCIWRSMN  614 (616)
Q Consensus       556 l~s~s~dg~i~iwd~~--~---~~~~~~~~~--h~~~V~~l~~s~--~~~-~l-~t~s~Dg~i~vW~~~~  614 (616)
                      |..+-++..+..++.+  .   +..+....+  ....+-.|+.-.  +++ +| +|.-.|++..||+..+
T Consensus       194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9999888766555543  1   223322222  345677777543  333 44 4555678899998765

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.64  E-value=1.7  Score=37.97  Aligned_cols=182  Identities=12%  Similarity=0.015  Sum_probs=84.2

Q ss_pred             cceEEEEECCCCCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEee
Q psy3640         188 LPLTNITFDKFGTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYR  267 (616)
Q Consensus       188 ~~i~~v~~s~~g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~  267 (616)
                      ..|..|+-..  ...++-. ||.|..|-......+-.-......|..++--... .++ -.|+.+..|.....-......
T Consensus        26 ~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~-~~a-l~dg~v~~wG~~~~gq~~~~~  100 (273)
T d1jtdb_          26 SGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLA-LKDGEVIAWGGNEDGQTTVPA  100 (273)
T ss_dssp             SSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSE-EEE-EETTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCc-eee-eeeeeeeccCCCcceeecccc
Confidence            3577776632  2233334 7899888765433222112223344444432222 222 248999999764322111111


Q ss_pred             CCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceeeE-EEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q psy3640         268 GHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAEV-TFSPDQSTFCSCSMDHTARIFNTNSGQEMH  346 (616)
Q Consensus       268 ~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  346 (616)
                      .....+..++..   ....+.. .|+.+..|.................+ ........++ ...++.++.|-........
T Consensus       101 ~~~~~~~~i~~~---~~~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~g~~~~~G~~~~g~~~  175 (273)
T d1jtdb_         101 EARSGVDAIAAG---AWASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTAL-AVKNGGVIAWGDNYFGQTT  175 (273)
T ss_dssp             GGGSSCCEEEEE---TTEEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEE-EEETTEEEEEECCTTSTTS
T ss_pred             ccccceeEEeee---ccccccc-ccccceecccCCCCceeeeccCCceEEEEeccceeee-eecccceeEeecccCCccc
Confidence            112234444443   2333332 47899999644322211111111111 2222222333 3347788888654432222


Q ss_pred             EeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEecc
Q psy3640         347 TLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQ  382 (616)
Q Consensus       347 ~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~  382 (616)
                      ........|..++....  ..+.-. ||.|+.|=..
T Consensus       176 ~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n  208 (273)
T d1jtdb_         176 VPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDN  208 (273)
T ss_dssp             CCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred             ccccccCCccceeccce--eeEEEe-cCcEEEcCCC
Confidence            22234556777776432  222223 7999988643

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=2.9  Score=36.45  Aligned_cols=63  Identities=16%  Similarity=0.217  Sum_probs=31.7

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCeEEEEeecCCCCE-EEEEEcCCCCEEEEEeCCC-----cEEEEecCCc
Q psy3640         421 SNSMIASSSLD-----GTAKLWDVRTMCCFYTLKNHEDEV-LDIAFDYSGSKLATASSDQ-----TANLWTVGGA  484 (616)
Q Consensus       421 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v-~~l~~~~~~~~l~~~~~dg-----~i~iwd~~~~  484 (616)
                      .+..++.|+.+     .....+|..+.+....-....... .+++. .++++++.|+.++     .+.+||+...
T Consensus       195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence            45555665544     346777877765443222111111 12222 3566777766543     2667777653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.95  E-value=9.6  Score=34.71  Aligned_cols=133  Identities=8%  Similarity=0.031  Sum_probs=77.2

Q ss_pred             cEEEEEEcCCCCEEEEECCCcEEEEeCC-----------CCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEe
Q psy3640         231 VVYAVAFSEPYGCLTGSYDRTCKLWDIK-----------SGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWA  299 (616)
Q Consensus       231 ~I~~l~fs~~~~lls~s~d~~I~iwd~~-----------~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd  299 (616)
                      ...-++.++...+++++....++|-...           .........  -..|..++|+   ++.++.. .++.+..++
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs---~d~l~v~-~~~~l~~~~  111 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFH---GDQVLVS-TRNALYSLD  111 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEE---TTEEEEE-ESSEEEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEee---CCEEEEE-eCCCEEEEE
Confidence            3455667766666644444456676531           111111222  2368999998   4555554 446677777


Q ss_pred             CCCcceeEE---eeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-----cCCcCEEEEEEcCCCCEEEEEE
Q psy3640         300 SAKEECIQT---YRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLK-----AHTGPVISLQFSSDRNMLITGS  371 (616)
Q Consensus       300 ~~~~~~~~~---~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~v~~l~~~~~~~~l~~g~  371 (616)
                      ...-.....   +......+.++|  ..++....+|.+.++++..++......     .-.+.+.+++|++.|..++++.
T Consensus       112 ~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         112 LEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             eeccccccccccccccccceecCC--ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            665433322   233333444444  567788889999999998876432211     1235677888887777777764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=2.1  Score=37.40  Aligned_cols=106  Identities=10%  Similarity=-0.005  Sum_probs=50.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEecCCceEEeEEeeccccCEEEEEEecCCCEEEEEECC-----CcEEEecCCcCeeeeE
Q psy3640         509 SGSKLATASSD-----QTAKLWTVGGAVELLQTFYGHSNEVSKVSFHPTGKLVLSGSQD-----TTCRLWSTESGECIQV  578 (616)
Q Consensus       509 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~h~~~v~~l~~spdg~~l~s~s~d-----g~i~iwd~~~~~~~~~  578 (616)
                      ++..++.|+.+     ..+..||.................-.+.+. .+++.++.|+.+     .....+|..+.+....
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~  226 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  226 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence            34455555543     456777776642221111111111112222 245566666544     2456677666543322


Q ss_pred             eccCcccEEEEEEeeCCCEEEEeeCCCc-----EEEcccCCC
Q psy3640         579 LKAHEDDVFSCGFNYNGDTIITASKDNT-----CCIWRSMNR  615 (616)
Q Consensus       579 ~~~h~~~V~~l~~s~~~~~l~t~s~Dg~-----i~vW~~~~~  615 (616)
                      -..........+...++++++.|+.++.     +.+||+.+.
T Consensus       227 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         227 APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             cCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence            1211111211222347888888876543     778887653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=86.88  E-value=10  Score=33.95  Aligned_cols=162  Identities=10%  Similarity=0.097  Sum_probs=85.8

Q ss_pred             CCeEEEEeCCCcceeE-E------------eeeceeeEEEcCCCC-EEEEEe---CCCcEEEEECCCCc--ee--EEeec
Q psy3640         292 DKTLKLWASAKEECIQ-T------------YRGHSAEVTFSPDQS-TFCSCS---MDHTARIFNTNSGQ--EM--HTLKA  350 (616)
Q Consensus       292 dg~i~iwd~~~~~~~~-~------------~~~~~~~v~~~~~~~-~l~~~~---~dg~i~i~d~~~~~--~~--~~~~~  350 (616)
                      .|.+.++|+.+.+... .            +..|.-.+.-.+++. +|++..   ...+|.+|++....  ..  .++..
T Consensus        67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            4888899987654321 1            112222333345555 344442   34568888775432  21  12221


Q ss_pred             -CCcCEEEEEEcCCCCEEEEEEC---C------------CcEEEEecccccCCcccccccccccCCcceEEEecCcccee
Q psy3640         351 -HTGPVISLQFSSDRNMLITGSF---D------------SSIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQEIS  414 (616)
Q Consensus       351 -~~~~v~~l~~~~~~~~l~~g~~---d------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  414 (616)
                       .......+++..++.+++|-..   +            +...+|...                 ..........-....
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~-----------------~~~~~~~~~~l~~pN  209 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS-----------------PNDVRVVAEGFDFAN  209 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC-----------------SSCEEEEEEEESSEE
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc-----------------CCceEEEcCCCCccc
Confidence             1234678888878877776311   0            122333322                 122233333345677


Q ss_pred             EEEEccCCCEEEEEe-CCCcEEEEeCCCCeEEE--EeecCCCCEEEEEEcCC-CCEEEEE
Q psy3640         415 NCLFNFSNSMIASSS-LDGTAKLWDVRTMCCFY--TLKNHEDEVLDIAFDYS-GSKLATA  470 (616)
Q Consensus       415 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~~~~-~~~l~~~  470 (616)
                      .++++|++++|+++. ..+.|+.|++.......  ....-....-.+.+++. |.+.+++
T Consensus       210 GI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         210 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             eeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            899999998776554 56789999886443221  12224556677888764 4444443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.30  E-value=7.6  Score=31.80  Aligned_cols=220  Identities=10%  Similarity=0.047  Sum_probs=110.4

Q ss_pred             CCEEEEEECCCcEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEE--E-----EECCCcEEEEeCCCCceEEEeeCCC
Q psy3640         199 GTRCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPY-GCL--T-----GSYDRTCKLWDIKSGHEICTYRGHQ  270 (616)
Q Consensus       199 g~~lasgs~dg~i~iwd~~~~~~~~~~~~h~~~I~~l~fs~~~-~ll--s-----~s~d~~I~iwd~~~~~~~~~~~~h~  270 (616)
                      .+.++++...|.+.++-+..++.++--+   .+|.....-..+ .++  +     |..-..|.+-++...-....+....
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk  102 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK  102 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCc
Confidence            4578888889999999888776654222   222221111111 011  1     0111234444443222223333332


Q ss_pred             -CcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEEeeeceee------------E-EEcCCCCEEEEEeC-CCcEE
Q psy3640         271 -NVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQTYRGHSAE------------V-TFSPDQSTFCSCSM-DHTAR  335 (616)
Q Consensus       271 -~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~------------v-~~~~~~~~l~~~~~-dg~i~  335 (616)
                       -.|.++++  .+.+...+|+......+|-++.|+......-+.-.            + -+.+...-++++.- .|.++
T Consensus       103 ~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lr  180 (313)
T d2hu7a1         103 PMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  180 (313)
T ss_dssp             SBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEE
T ss_pred             eEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEE
Confidence             45777777  56788889998888889988888654433222111            1 13333333444444 55566


Q ss_pred             EEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECC-C--cEEEEecccccCCcccccccccccCCcceEEEecCccc
Q psy3640         336 IFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFD-S--SIVVWDIQYQFGTRNAYAESTYRASHKPIHILTGHSQE  412 (616)
Q Consensus       336 i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (616)
                      +++...           +.++...+.+..+. +++-.. |  ...-+|++...-.+.         .........-..-.
T Consensus       181 i~tpke-----------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerv---------e~P~kd~~sy~p~~  239 (313)
T d2hu7a1         181 VFDSGE-----------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDL---------ELPSKDFSSYRPTA  239 (313)
T ss_dssp             EECCSS-----------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEEC---------CCSSCHHHHHCCSE
T ss_pred             EecCCC-----------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeee---------ecCcccceeecceE
Confidence            665544           44455555544333 333211 1  111234431110000         00000000112234


Q ss_pred             eeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEE
Q psy3640         413 ISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFY  446 (616)
Q Consensus       413 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  446 (616)
                      |+-+-+.|++++++.+-.||.-.+|.  +|+.+.
T Consensus       240 I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         240 ITWLGYLPDGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             EEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence            55666899999999999999999986  455443

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=85.34  E-value=4.4  Score=35.16  Aligned_cols=220  Identities=13%  Similarity=0.050  Sum_probs=98.8

Q ss_pred             CCcEEEEEEcCCCCEEEEECCCcEEEEeCCCCceEEEeeCCCCcEEEEEEeCCCCCEEEEEECCCeEEEEeCCCcceeEE
Q psy3640         229 QNVVYAVAFSEPYGCLTGSYDRTCKLWDIKSGHEICTYRGHQNVVYAVAFSEPYGDKILTGSFDKTLKLWASAKEECIQT  308 (616)
Q Consensus       229 ~~~I~~l~fs~~~~lls~s~d~~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~  308 (616)
                      ...|..++-.... .++.. ||.|..|-....-++-.-......|..++.-   ..+.+.- .|+.+..|.....-....
T Consensus        25 ~~~i~~va~G~~h-~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G---~~~~~al-~dg~v~~wG~~~~gq~~~   98 (273)
T d1jtdb_          25 QSGVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG---NYHSLAL-KDGEVIAWGGNEDGQTTV   98 (273)
T ss_dssp             SSSEEEEEECSSE-EEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC---SSEEEEE-ETTEEEEEECCTTSTTCC
T ss_pred             CCCcEEEEccCCE-EEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC---CCceeee-eeeeeeccCCCcceeecc
Confidence            4457777654332 33334 8999999765443322222223445555542   2233323 489999997543211110


Q ss_pred             ---eeeceeeEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecCCcCEEEEEEcCCCCEEEEEECCCcEEEEeccccc
Q psy3640         309 ---YRGHSAEVTFSPDQSTFCSCSMDHTARIFNTNSGQEMHTLKAHTGPVISLQFSSDRNMLITGSFDSSIVVWDIQYQF  385 (616)
Q Consensus       309 ---~~~~~~~v~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~~~~~~l~~g~~dg~i~iwd~~~~~  385 (616)
                         .......++..  ....+. ..|+.+..|.................|..++-.  ...++ ...++.+..|-.....
T Consensus        99 ~~~~~~~~~~i~~~--~~~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g  172 (273)
T d1jtdb_          99 PAEARSGVDAIAAG--AWASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFG  172 (273)
T ss_dssp             CGGGGSSCCEEEEE--TTEEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTS
T ss_pred             ccccccceeEEeee--cccccc-cccccceecccCCCCceeeeccCCceEEEEecc--ceeee-eecccceeEeecccCC
Confidence               01111122221  222222 247888888644322211111122345444432  22233 3347888888654211


Q ss_pred             CCcccccccccccCCcceEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEeecCCCCEEEEEEcCCCC
Q psy3640         386 GTRNAYAESTYRASHKPIHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLKNHEDEVLDIAFDYSGS  465 (616)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~~~~~~  465 (616)
                      .                ..........|..++..  ....+.-. ||.|+.|=....-.+.........|..|+-.... 
T Consensus       173 ~----------------~~~~~~~~~~v~~Is~G--~~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-  232 (273)
T d1jtdb_         173 Q----------------TTVPAEAQSGVDDVAGG--IFHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-  232 (273)
T ss_dssp             T----------------TSCCGGGSSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-
T ss_pred             c----------------ccccccccCCccceecc--ceeeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-
Confidence            1                11111122344455433  22222223 7888888543211111111122446666654332 


Q ss_pred             EEEEEeCCCcEEEEecC
Q psy3640         466 KLATASSDQTANLWTVG  482 (616)
Q Consensus       466 ~l~~~~~dg~i~iwd~~  482 (616)
                      .++.  .||.|..|-..
T Consensus       233 ~~~l--~~g~v~~WG~~  247 (273)
T d1jtdb_         233 SLAL--KNGKVIAWGSS  247 (273)
T ss_dssp             EEEE--ETTEEEEESTT
T ss_pred             EEEE--ECCEEEEECCC
Confidence            3333  37899999643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.54  E-value=18  Score=33.78  Aligned_cols=61  Identities=10%  Similarity=0.126  Sum_probs=42.4

Q ss_pred             eEEEecCccceeEEEEccCCCEEEEEeCCCcEEEEeCCCCeEEEEee--------cCCCCEEEEEEcCC
Q psy3640         403 IHILTGHSQEISNCLFNFSNSMIASSSLDGTAKLWDVRTMCCFYTLK--------NHEDEVLDIAFDYS  463 (616)
Q Consensus       403 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~l~~~~~  463 (616)
                      +..+...-....+++|.|+++++++--..|.|++++..++.......        .-......|+++|+
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            33444444567799999999988877667999999987765432221        12356789999985