Psyllid ID: psy3650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEcEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHcccccccccHHHHHHHHHHHcccEEEEEcEEEEccccccccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccEEHEEHEEEEHHcccEEEEEEEEEEEccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdegnypyeiividdgspdgtLDAAKQLQSIYgsekivlkprkkklglgtAYMHGLKYATGNFIIIMdadlshhpkfiPEMIKLQqqenldvvtgtryvgtggvygwDFKRKLVSRGANYLTQLLlrpgvsdltgsFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYnytigevpisFVDRVVFTTqaimsgdsvknkytvllptynekenlPIIVYLITKymdegnypyeiividdgspdgtLDAAKQLQSIYgsekivlkprkkklglgtAYMHGLKYATGNFIIIMdadlshhpkfiPEMIKLQqqenldvvtgtryvgtggvygwDFKRKLVSRGANYLTQLLlrpgvsdltgsFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYnytigevpisfvdrvygesklggTEIFQFAKALLYLFATT
Flexible Loop (DISEMBL)
MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSiygsekivlkprkkKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQaimsgdsvknkYTVLLptynekenlpIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSiygsekivlkprkkKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT
Low Complexity Region (SEG)
MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDvvtgtryvgtggvygWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDvvtgtryvgtggvygWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT
Disordered region (IsUnstruct)
*****YPYEIIVIDDG****TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFA**
Disordered Region (DISOPRED)
***GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT
Disordered Region (DISEMBL)
MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT
Disordered Region (DISPRO)
***GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
Q9VIU7	241	Probable dolichol-phospha	yes	N/A	0.542	0.979	0.75	1e-106
O60762	260	Dolichol-phosphate mannos	yes	N/A	0.544	0.911	0.742	1e-106
A5GFZ5	259	Dolichol-phosphate mannos	yes	N/A	0.544	0.915	0.734	1e-104
Q1JQ93	260	Dolichol-phosphate mannos	yes	N/A	0.549	0.919	0.719	1e-104
Q9WU83	266	Dolichol-phosphate mannos	yes	N/A	0.549	0.898	0.715	1e-104
O70152	260	Dolichol-phosphate mannos	yes	N/A	0.549	0.919	0.715	1e-103
O14466	236	Dolichol-phosphate mannos	yes	N/A	0.535	0.987	0.652	1e-88
Q54LP3	254	Dolichol-phosphate mannos	yes	N/A	0.535	0.917	0.585	5e-80
P54856	294	Dolichol-phosphate mannos	N/A	N/A	0.510	0.755	0.306	2e-21
P14020	267	Dolichol-phosphate mannos	yes	N/A	0.514	0.838	0.314	1e-20

>sp|Q9VIU7|DPM1_DROME Probable dolichol-phosphate mannosyltransferase OS=Drosophila melanogaster GN=CG10166 PE=3 SV=1

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 208/236 (88%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY++L+PTYNEK+NLPII++LI KYM      YE+IVIDDGSPDGTLD AK LQ IYG 
Sbjct: 6   HKYSILMPTYNEKDNLPIIIWLIVKYMKASGLEYEVIVIDDGSPDGTLDVAKDLQKIYGE 65

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
           +KIVL+PR  KLGLGTAY+HG+K+ATG+FI+I+DADLSHHPKFIPE IKLQQ+ N D+V+
Sbjct: 66  DKIVLRPRGSKLGLGTAYIHGIKHATGDFIVIIDADLSHHPKFIPEFIKLQQEGNYDIVS 125

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY G GGV+GWDFKRKL+SRGAN+L+Q+LLRP  SDLTGSFRLYKK VLE  ++SCVS
Sbjct: 126 GTRYAGNGGVFGWDFKRKLISRGANFLSQVLLRPNASDLTGSFRLYKKDVLEKCIASCVS 185

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           KGYVFQMEM++RARQ+ YTI EVPI+FVDR+YG SKLGGTEI QFAK LLYLFATT
Sbjct: 186 KGYVFQMEMLVRARQHGYTIAEVPITFVDRIYGTSKLGGTEIIQFAKNLLYLFATT 241

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 8EC: 3

>sp|O60762|DPM1_HUMAN Dolichol-phosphate mannosyltransferase OS=Homo sapiens GN=DPM1 PE=1 SV=1

 Score =  384 bits (987), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 208/237 (87%)

Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
           +NKY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT D A+QL+ IYG
Sbjct: 24  QNKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEIIIIDDGSPDGTRDVAEQLEKIYG 83

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
           S++I+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D+V
Sbjct: 84  SDRILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFDIV 143

Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
           +GTRY G GGVYGWD KRK++SRGAN+LTQ+LLRPG SDLTGSFRLY+K+VLE L+  CV
Sbjct: 144 SGTRYKGNGGVYGWDLKRKIISRGANFLTQILLRPGASDLTGSFRLYRKEVLEKLIEKCV 203

Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct: 204 SKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|A5GFZ5|DPM1_PIG Dolichol-phosphate mannosyltransferase OS=Sus scrofa GN=DPM1 PE=3 SV=1

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/237 (73%), Positives = 207/237 (87%)

Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
           ++KY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT D A+QL  IYG
Sbjct: 23  QDKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEIIIIDDGSPDGTRDIAEQLVKIYG 82

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
           S+KI+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D+V
Sbjct: 83  SDKILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFDIV 142

Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
           +GTRY G GGVYGWD KRK++SRGAN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  CV
Sbjct: 143 SGTRYKGNGGVYGWDLKRKIISRGANFITQILLRPGASDLTGSFRLYRKEVLQKLIEKCV 202

Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct: 203 SKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 259

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|Q1JQ93|DPM1_BOVIN Dolichol-phosphate mannosyltransferase OS=Bos taurus GN=DPM1 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 172/239 (71%), Positives = 208/239 (87%)

Query: 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
           S ++KY+VLLPTYNE+ENLP IV+L+ K   E  + YEII+IDDGSPDGT D A+QL+ I
Sbjct: 22  SRQDKYSVLLPTYNERENLPFIVWLLVKSFSESGFNYEIIIIDDGSPDGTRDVAEQLEKI 81

Query: 257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
           YGS++I+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D
Sbjct: 82  YGSDRILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFD 141

Query: 317 VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
           +V+GTRY G GGVYGWD KRK++SR AN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  
Sbjct: 142 IVSGTRYKGNGGVYGWDLKRKIISRVANFITQILLRPGASDLTGSFRLYRKEVLQKLIGK 201

Query: 377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           C+SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct: 202 CISKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|Q9WU83|DPM1_CRIGR Dolichol-phosphate mannosyltransferase OS=Cricetulus griseus GN=DPM1 PE=2 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 171/239 (71%), Positives = 209/239 (87%)

Query: 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
           S ++KY+VLLPTYNE+ENLP+IV+L+ K   E +  YEII+IDDGSPDGT + A+QL+ I
Sbjct: 28  SRRDKYSVLLPTYNERENLPLIVWLLVKSFSESSINYEIIIIDDGSPDGTREVAEQLEKI 87

Query: 257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
           YG ++I+L+PR+KKLGLGTAY+HG+K+ATGN++IIMDADLSHHPKFIPE I+ Q++ N D
Sbjct: 88  YGPDRILLRPREKKLGLGTAYIHGIKHATGNYVIIMDADLSHHPKFIPEFIRKQKEGNFD 147

Query: 317 VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
           +V+GTRY G GGVYGWD KRK++SRGAN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  
Sbjct: 148 IVSGTRYKGNGGVYGWDLKRKIISRGANFITQILLRPGASDLTGSFRLYRKEVLQKLIEK 207

Query: 377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           CVSKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct: 208 CVSKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 266

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|O70152|DPM1_MOUSE Dolichol-phosphate mannosyltransferase OS=Mus musculus GN=Dpm1 PE=2 SV=1

 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 171/239 (71%), Positives = 207/239 (86%)

Query: 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
           S ++KY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT + A+QL  I
Sbjct: 22  SRQDKYSVLLPTYNERENLPLIVWLLVKSFSESAINYEIIIIDDGSPDGTREVAEQLAEI 81

Query: 257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
           YG ++I+L+PR+KKLGLGTAY+HG+K+ATGN++IIMDADLSHHPKFIPE I+ Q++ N D
Sbjct: 82  YGPDRILLRPREKKLGLGTAYIHGIKHATGNYVIIMDADLSHHPKFIPEFIRKQKEGNFD 141

Query: 317 VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
           +V+GTRY G GGVYGWD KRK++SRGAN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  
Sbjct: 142 IVSGTRYKGNGGVYGWDLKRKIISRGANFITQILLRPGASDLTGSFRLYRKEVLQKLIEK 201

Query: 377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           CVSKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct: 202 CVSKGYVFQMEMIVRARQMNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|O14466|DPM1_SCHPO Dolichol-phosphate mannosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpm1 PE=2 SV=1

 Score =  327 bits (837), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/233 (65%), Positives = 187/233 (80%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY+VLLPTYNE++NLPII YLI K  D+    +EI++IDD SPDGT + AK+LQ IYG 
Sbjct: 2   SKYSVLLPTYNERKNLPIITYLIAKTFDQEKLDWEIVIIDDASPDGTQEVAKELQKIYGE 61

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
           +KI+LKPR  KLGLGTAY+HGLK+ATG+F+IIMDAD SHHPK++PE IKLQ++ N D+V 
Sbjct: 62  DKILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDADFSHHPKYLPEFIKLQKEHNYDIVL 121

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY   GGVYGW+ KRK +SRGAN L   +L  GVSD+TGSFRLYKK VLE L+S   S
Sbjct: 122 GTRYAKDGGVYGWNLKRKFISRGANLLASTVLGTGVSDVTGSFRLYKKPVLETLMSEVTS 181

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLF 432
           KGYVFQME++ RAR++NYTIGEVPI+FVDR+YGESKLG  +I  + K +  L 
Sbjct: 182 KGYVFQMEIIARAREHNYTIGEVPIAFVDRLYGESKLGMDDILGYLKGVFSLL 234

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|Q54LP3|DPM1_DICDI Dolichol-phosphate mannosyltransferase OS=Dictyostelium discoideum GN=dpm1 PE=3 SV=1

 Score =  298 bits (763), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 137/234 (58%), Positives = 184/234 (78%)

Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
           K+KYT++LPTY E+ENLPII++LI+  +++    YE+++++D SPDGTL+ A+QLQ IYG
Sbjct: 17  KDKYTIILPTYKERENLPIIIWLISTELEKCFIDYEVVIVEDNSPDGTLEVAQQLQKIYG 76

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
            EKI +  R  K+GLG+AYM G+K +TGN++I+MDADLSHHPKFIP+ I+ Q++ N ++V
Sbjct: 77  EEKIKILSRPGKMGLGSAYMDGIKKSTGNWVILMDADLSHHPKFIPQFIEKQKKLNCEIV 136

Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
           TGTRY   GGV+GW+  RKL SR ANY+  +LL PGVSDLTGSFRLY+K VLE L++   
Sbjct: 137 TGTRYQSGGGVFGWNLYRKLTSRVANYIASVLLTPGVSDLTGSFRLYRKDVLEKLITQNK 196

Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLF 432
           SKGYVFQ+EM++RA Q  Y +GEVPI+FVDR++G S L   EI  F K++L LF
Sbjct: 197 SKGYVFQVEMMVRANQLGYQVGEVPITFVDRIFGVSNLDSGEIVGFLKSVLNLF 250

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|P54856|DPM1_USTMA Dolichol-phosphate mannosyltransferase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=DPM1 PE=3 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 16/238 (6%)

Query: 203 TVLLPTYNEKENL-PIIVYLITKYMDEGNYPY---EIIVIDDGSPDGTLDAAKQLQSIYG 258
           +V++P + E  NL P++  L + +  + +      EII++DD S DG+++    LQS   
Sbjct: 31  SVIVPAFRENLNLRPLVTRLSSAFASQSSSELANTEIIIVDDNSRDGSVETVSALQSEGY 90

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPE-MIKLQQQENLDV 317
           + +I++  R  + GL +A + G + A G  +I MDADL H P+ +P  ++ L  Q++   
Sbjct: 91  NVRIIV--RTSERGLSSAVVRGFREARGQRMICMDADLQHPPEAVPSLLLALNGQKSF-- 146

Query: 318 VTGTRY-VGTGGVYGWDFKRKLVSRGANYLTQLLLRP--GVSDLTGSFRLYKKQVLENLV 374
           V GTRY VG      W   R+++S GA    ++L RP    SD    F    K       
Sbjct: 147 VLGTRYGVGVSMDKDWPLHRRIISSGA----RMLARPLTSASDPMSGFFGITKHSFHTAD 202

Query: 375 SSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLF 432
               ++G+   +++++++  ++  I EVP SF  R  GESKL G  +F++ + L+ L+
Sbjct: 203 HHINAQGFKIALDLLVKSGVHSTDIAEVPFSFGLRQEGESKLDGKVMFKYLQQLVELY 260

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

>sp|P14020|DPM1_YEAST Dolichol-phosphate mannosyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPM1 PE=1 SV=3

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 123/242 (50%), Gaps = 18/242 (7%)

Query: 201 KYTVLLPTYNEKENL-PIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +Y+V++P Y+EK N+ P+   L      E     E+I +DD S DG+++    L     +
Sbjct: 4   EYSVIVPAYHEKLNIKPLTTRLFAGMSPEMAKKTELIFVDDNSQDGSVEEVDALAHQGYN 63

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
            +I++  R  + GL +A + G   A G +++ MDADL H P+ +P++ +        +  
Sbjct: 64  VRIIV--RTNERGLSSAVLKGFYEAKGQYLVCMDADLQHPPETVPKLFESLHDHAFTL-- 119

Query: 320 GTRYV-GTGGVYGWDFKRKLVSRGANYLTQLLLRPG--VSDLTGSFRLYKKQVLENLVSS 376
           GTRY  G G    W   R+++S  A    +++ RP    SD    F   +K+ LEN    
Sbjct: 120 GTRYAPGVGIDKDWPMYRRVISSTA----RMMARPLTIASDPMSGFFGLQKKYLENCNPR 175

Query: 377 CV-SKGYVFQMEMVIR---ARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKAL--LY 430
            + S+G+   +E++ +    R     IGEVP +F  R  GESKL G  I Q+ + L  LY
Sbjct: 176 DINSQGFKIALELLAKLPLPRDPRVAIGEVPFTFGVRTEGESKLSGKVIIQYLQQLKELY 235

Query: 431 LF 432
           +F
Sbjct: 236 VF 237

Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 8

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
91086609	245	PREDICTED: similar to dolichyl-phosphate	0.549	0.975	0.786	1e-112
332021240	253	Putative dolichol-phosphate mannosyltran	0.542	0.932	0.809	1e-111
350419558	253	PREDICTED: dolichol-phosphate mannosyltr	0.542	0.932	0.805	1e-111
383847557	253	PREDICTED: dolichol-phosphate mannosyltr	0.549	0.944	0.794	1e-110
322784295	237	hypothetical protein SINV_10884 [Solenop	0.542	0.995	0.796	1e-110
380011871	253	PREDICTED: probable dolichol-phosphate m	0.542	0.932	0.796	1e-110
156552762	251	PREDICTED: dolichol-phosphate mannosyltr	0.556	0.964	0.776	1e-110
242018889	253	Dolichol-phosphate mannosyltransferase,	0.544	0.936	0.793	1e-110
340712884	253	PREDICTED: LOW QUALITY PROTEIN: probable	0.542	0.932	0.792	1e-110
48101013	253	PREDICTED: probable dolichol-phosphate m	0.542	0.932	0.792	1e-110

>gi|91086609|ref|XP_973998.1| PREDICTED: similar to dolichyl-phosphate mannosyltransferase [Tribolium castaneum]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/239 (78%), Positives = 221/239 (92%)

Query: 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
           S ++KY++LLPTYNE ENLPIIV+LI KYM++  Y YE+I+IDDGSPDGT DAAKQLQ I
Sbjct: 7   SSEDKYSILLPTYNEVENLPIIVWLIVKYMEKSGYNYEVIIIDDGSPDGTQDAAKQLQKI 66

Query: 257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
           YG  KI+LKPR+KKLGLGTAY+HG+K+A+GNFI+IMDADLSHHPKFIP+ I+ Q+ ++ D
Sbjct: 67  YGENKILLKPREKKLGLGTAYIHGMKHASGNFILIMDADLSHHPKFIPQFIEKQKSKDYD 126

Query: 317 VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
           VV+GTRYVG+GGVYGWDF+RKL+SRGAN+LTQLLLRPG SDLTGSFRLYKK VLE L+ S
Sbjct: 127 VVSGTRYVGSGGVYGWDFRRKLISRGANFLTQLLLRPGASDLTGSFRLYKKDVLEKLIKS 186

Query: 377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           CVSKGYVFQMEM++RARQ+NYT+GEVPI+FVDRVYGESKLGG+EIFQFAKALLYLFATT
Sbjct: 187 CVSKGYVFQMEMIVRARQFNYTVGEVPITFVDRVYGESKLGGSEIFQFAKALLYLFATT 245

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021240|gb|EGI61625.1| Putative dolichol-phosphate mannosyltransferase [Acromyrmex echinatior]

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/236 (80%), Positives = 216/236 (91%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY++LLPTYNE ENLPII++LI KYM+E    YEIIVIDDGSPDGTL+ AKQLQ +YG 
Sbjct: 18  DKYSILLPTYNEVENLPIIIWLIVKYMEESELAYEIIVIDDGSPDGTLNMAKQLQRVYGD 77

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
           +KI+LKPR+KKLGLGTAYMHG+KYATGNFIIIMDADLSHHPKFIP+M +LQ+  NLDVV+
Sbjct: 78  DKIILKPREKKLGLGTAYMHGIKYATGNFIIIMDADLSHHPKFIPKMAELQRYLNLDVVS 137

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY   GGVYGWDFKRKLVSRGAN+LTQ+LLRPG SDLTGSFRLYKK VLE L+ SCVS
Sbjct: 138 GTRYAQGGGVYGWDFKRKLVSRGANFLTQILLRPGASDLTGSFRLYKKDVLEKLIQSCVS 197

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           KGYVFQMEM++RARQ+NYTIGEVPI+FVDRVYG+SKLGG+EIFQFAK LLYLFATT
Sbjct: 198 KGYVFQMEMIVRARQFNYTIGEVPITFVDRVYGQSKLGGSEIFQFAKGLLYLFATT 253

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419558|ref|XP_003492225.1| PREDICTED: dolichol-phosphate mannosyltransferase-like [Bombus impatiens]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/236 (80%), Positives = 217/236 (91%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY++LLPTYNE ENLPIIV+LI KYMDE    YEIIVIDDGSPDGTLD AKQLQ++YG 
Sbjct: 18  DKYSILLPTYNEVENLPIIVWLIVKYMDESELDYEIIVIDDGSPDGTLDMAKQLQNVYGE 77

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
            KIVL+PR+KKLGLGTAYMHG+K+ATGNFI+IMDADLSHHPKFIP+MI+ Q+  +LD+V+
Sbjct: 78  NKIVLRPREKKLGLGTAYMHGIKHATGNFIVIMDADLSHHPKFIPKMIEQQRYLDLDIVS 137

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY   GGVYGWDFKRKL+SRGAN+LTQLLLRPGVSDLTGSFRLYKK VLE L+ SC+S
Sbjct: 138 GTRYEQGGGVYGWDFKRKLISRGANFLTQLLLRPGVSDLTGSFRLYKKDVLEKLIQSCIS 197

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           KGYVFQMEM++RARQ+NYTIGE+PI+FVDRVYGESKLGG+EIFQFAK LLYLFATT
Sbjct: 198 KGYVFQMEMIVRARQFNYTIGEIPITFVDRVYGESKLGGSEIFQFAKGLLYLFATT 253

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847557|ref|XP_003699419.1| PREDICTED: dolichol-phosphate mannosyltransferase-like [Megachile rotundata]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/239 (79%), Positives = 216/239 (90%)

Query: 197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
           S  +KY++LLPTYNE ENLPII++LITKYMDE    YEIIVIDDGSPDGTLD AKQLQ++
Sbjct: 15  SKNDKYSILLPTYNEVENLPIIIWLITKYMDESKLDYEIIVIDDGSPDGTLDMAKQLQNV 74

Query: 257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
           YG  +IVL+PR+KKLGLGTAYMHG+K+ATGNFI+IMDADLSHHPKFIP+MI+ Q+  +LD
Sbjct: 75  YGENRIVLRPREKKLGLGTAYMHGIKHATGNFIVIMDADLSHHPKFIPKMIEQQRYLDLD 134

Query: 317 VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
           +VTGTRY   GGVYGWDFKRKL+SRGAN+LTQ+LLRPGVSDLTGSFRLYKK VLE L+ S
Sbjct: 135 IVTGTRYAQGGGVYGWDFKRKLISRGANFLTQILLRPGVSDLTGSFRLYKKDVLEKLIQS 194

Query: 377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           CVSKGYVFQMEM++RARQ  YTIGEVPI+FVDRVYGESKLGG+EI QFAK LLYLFATT
Sbjct: 195 CVSKGYVFQMEMIVRARQLKYTIGEVPITFVDRVYGESKLGGSEIVQFAKGLLYLFATT 253

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784295|gb|EFZ11300.1| hypothetical protein SINV_10884 [Solenopsis invicta]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/236 (79%), Positives = 216/236 (91%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY++LLPTYNE ENLPII++LI KYM+E    YEIIVIDDGSPDGTLD AKQLQ +YG 
Sbjct: 2   DKYSILLPTYNEVENLPIIIWLIVKYMEESELAYEIIVIDDGSPDGTLDMAKQLQCLYGD 61

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
           +K++LKPR+KKLGLGTAY+HG+KYATGNFI+IMDADLSHHPKFIP+M +LQ+  +LD+V+
Sbjct: 62  DKVILKPREKKLGLGTAYIHGIKYATGNFIVIMDADLSHHPKFIPKMAELQRYLDLDIVS 121

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY   GGVYGWDFKRKLVSRGAN+LTQ+LLRPG SDLTGSFRLYKK VLE L+ SCVS
Sbjct: 122 GTRYAQGGGVYGWDFKRKLVSRGANFLTQILLRPGASDLTGSFRLYKKDVLEKLIQSCVS 181

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           KGYVFQMEM+IRARQ+NYTIGEVPI+FVDRVYG+SKLGG+EIFQFAK LLYLFATT
Sbjct: 182 KGYVFQMEMIIRARQFNYTIGEVPITFVDRVYGQSKLGGSEIFQFAKGLLYLFATT 237

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011871|ref|XP_003690017.1| PREDICTED: probable dolichol-phosphate mannosyltransferase-like [Apis florea]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/236 (79%), Positives = 216/236 (91%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY++LLPTYNE ENLPII++LI KYMDE +  YEIIVIDDGSPDGTLD AKQLQ++YG 
Sbjct: 18  DKYSILLPTYNEVENLPIIIWLIIKYMDESDLDYEIIVIDDGSPDGTLDMAKQLQNVYGE 77

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
            KIVL+PR+KKLGLGTAYMHG+K+ATGNFI+IMDADLSHHPKFIP+MI+ Q+  +LD+V+
Sbjct: 78  NKIVLRPREKKLGLGTAYMHGIKHATGNFIVIMDADLSHHPKFIPKMIEQQRYLDLDIVS 137

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY   GGVYGWDFKRKL+SRGAN+LTQLLLRPG SDLTGSFRLYKK VLE L+ SCVS
Sbjct: 138 GTRYAQGGGVYGWDFKRKLISRGANFLTQLLLRPGASDLTGSFRLYKKDVLEKLIQSCVS 197

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           KGYVFQMEM++RARQ+ YTIGEVPI+FVDR+YGESKLGG+EIFQFAK LLYLFATT
Sbjct: 198 KGYVFQMEMIVRARQFKYTIGEVPITFVDRLYGESKLGGSEIFQFAKGLLYLFATT 253

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552762|ref|XP_001599325.1| PREDICTED: dolichol-phosphate mannosyltransferase-like [Nasonia vitripennis]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/242 (77%), Positives = 216/242 (89%)

Query: 194 SGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQL 253
           + D   NKY++LLPTYNE ENLPIIV+LI KYM+E    YEIIVIDDGSPDGTLD A+QL
Sbjct: 10  ASDIGDNKYSILLPTYNEVENLPIIVWLIVKYMNEAKVSYEIIVIDDGSPDGTLDMARQL 69

Query: 254 QSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE 313
           Q++YG +KIVL PR++KLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPEMIK Q + 
Sbjct: 70  QNLYGDDKIVLNPRERKLGLGTAYIHGIKHATGNYIIIMDADLSHHPKFIPEMIKEQVKN 129

Query: 314 NLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 373
           N DVVTGTRY G GGVYGWDFKRKL+SRGAN++TQ++LRPGVSDLTGSFRLYKK VLE L
Sbjct: 130 NFDVVTGTRYAGNGGVYGWDFKRKLISRGANFITQIMLRPGVSDLTGSFRLYKKDVLEKL 189

Query: 374 VSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFA 433
             SCVSKGYVFQMEM++RARQ++++IGEVPISFVDRVYGESKLGG+EI QF K LLYLFA
Sbjct: 190 TKSCVSKGYVFQMEMIVRARQFSFSIGEVPISFVDRVYGESKLGGSEIVQFVKGLLYLFA 249

Query: 434 TT 435
           TT
Sbjct: 250 TT 251

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018889|ref|XP_002429901.1| Dolichol-phosphate mannosyltransferase, putative [Pediculus humanus corporis] gi|212514947|gb|EEB17163.1| Dolichol-phosphate mannosyltransferase, putative [Pediculus humanus corporis]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/237 (79%), Positives = 219/237 (92%)

Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
           KNKY++LLPTYNEKENLPIIV+LI KYM+EGNY YEII+IDDGSPDGTL+ AKQLQ I+G
Sbjct: 17  KNKYSILLPTYNEKENLPIIVWLIVKYMNEGNYDYEIIIIDDGSPDGTLEVAKQLQKIFG 76

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
           S+K++L+PR+KKLGLGTAY+HGLK+++G++I+IMDADLSHHPKFIP+ I+ Q+ ++ DVV
Sbjct: 77  SDKLILRPREKKLGLGTAYIHGLKHSSGDYIVIMDADLSHHPKFIPQFIEFQKTQDFDVV 136

Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
           TGTRY G GGVYGWDFKRKLVSRGAN+LTQ LLRPGVSDLTGSFRLYKK VLE LVSSCV
Sbjct: 137 TGTRYKGNGGVYGWDFKRKLVSRGANFLTQFLLRPGVSDLTGSFRLYKKPVLEKLVSSCV 196

Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           SKG+VFQMEM+IRA++  +T+GEVPISFVDRVYGESKLG TEIFQF KALLYLF TT
Sbjct: 197 SKGFVFQMEMIIRAKENLFTVGEVPISFVDRVYGESKLGQTEIFQFIKALLYLFFTT 253

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712884|ref|XP_003394983.1| PREDICTED: LOW QUALITY PROTEIN: probable dolichol-phosphate mannosyltransferase-like [Bombus terrestris]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 215/236 (91%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY++LLPTYNE ENLPII++LI KYMDE    YEIIVIDDGSPDGTLD AKQLQ++YG 
Sbjct: 18  DKYSILLPTYNEVENLPIIIWLIVKYMDESELDYEIIVIDDGSPDGTLDMAKQLQNVYGE 77

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
            KI+L+PR KKLGLGTAYMHG+K+ATGNFI+IMDADLSHHPKFIP+MI+ Q+  +LD+++
Sbjct: 78  NKIILRPRXKKLGLGTAYMHGIKHATGNFIVIMDADLSHHPKFIPKMIEQQRYLDLDIIS 137

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY   GGVYGWDFKRKL+SRGAN+LTQLLLRPGVSDLTGSFRLYKK VLE L+ SC+S
Sbjct: 138 GTRYEQGGGVYGWDFKRKLISRGANFLTQLLLRPGVSDLTGSFRLYKKDVLEKLIQSCIS 197

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           KGYVFQMEM++RARQ+ YTIGEVPI+FVDRVYGESKLGG+EIFQFAK LLYLFATT
Sbjct: 198 KGYVFQMEMIVRARQFKYTIGEVPITFVDRVYGESKLGGSEIFQFAKGLLYLFATT 253

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48101013|ref|XP_392640.1| PREDICTED: probable dolichol-phosphate mannosyltransferase-like [Apis mellifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/236 (79%), Positives = 216/236 (91%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +KY++LLPTYNE ENLPII++LI KYMDE +  YEIIVIDDGSPDGTLD AKQLQ++YG 
Sbjct: 18  DKYSILLPTYNEIENLPIIIWLIIKYMDESDLDYEIIVIDDGSPDGTLDMAKQLQNVYGE 77

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
            KIVL+PR+KKLGLGTAYMHG+K+ATGNFI+IMDADLSHHPKFIP+MI+ Q+  +LD+V+
Sbjct: 78  NKIVLRPREKKLGLGTAYMHGIKHATGNFIVIMDADLSHHPKFIPKMIEQQRYLDLDIVS 137

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
           GTRY   GGVYGWDFKRKL+SRGAN+LTQLLLRPG SDLTGSFRLYKK VLE L+ SC+S
Sbjct: 138 GTRYAQGGGVYGWDFKRKLISRGANFLTQLLLRPGASDLTGSFRLYKKDVLEKLIQSCIS 197

Query: 380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           KGYVFQMEM++RARQ+ YTIGEVPI+FVDR+YGESKLGG+EIFQFAK LLYLFATT
Sbjct: 198 KGYVFQMEMIVRARQFKYTIGEVPITFVDRLYGESKLGGSEIFQFAKGLLYLFATT 253

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
FB|FBgn0032799	241	CG10166 [Drosophila melanogast	0.542	0.979	0.707	4e-90
UNIPROTKB|H0Y368	295	DPM1 "Dolichol-phosphate manno	0.331	0.488	0.618	3e-89
UNIPROTKB|O60762	260	DPM1 "Dolichol-phosphate manno	0.544	0.911	0.696	4.6e-89
UNIPROTKB|J9NZX5	260	DPM1 "Uncharacterized protein"	0.544	0.911	0.691	1.6e-88
UNIPROTKB|Q4QR31	247	dpm1 "MGC114892 protein" [Xeno	0.556	0.979	0.692	2.5e-88
ZFIN|ZDB-GENE-040801-115	250	dpm1 "dolichyl-phosphate manno	0.542	0.944	0.699	4.1e-88
UNIPROTKB|A5GFZ5	259	DPM1 "Dolichol-phosphate manno	0.544	0.915	0.687	8.6e-88
UNIPROTKB|Q1JQ93	260	DPM1 "Dolichol-phosphate manno	0.549	0.919	0.673	2.9e-87
UNIPROTKB|C7FFR6	260	DPM1 "Mannosylphosphodolichol	0.549	0.919	0.673	3.7e-87
MGI|MGI:1330239	260	Dpm1 "dolichol-phosphate (beta	0.549	0.919	0.669	1.6e-86

FB|FBgn0032799 CG10166 [Drosophila melanogaster (taxid:7227)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 167/236 (70%), Positives = 195/236 (82%)

Query:   200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
             +KY++L+PTYNEK+NLPII++LI KYM      YE+IVIDDGSPDGTLD AK LQ IYG 
Sbjct:     6 HKYSILMPTYNEKDNLPIIIWLIVKYMKASGLEYEVIVIDDGSPDGTLDVAKDLQKIYGE 65

Query:   260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDXXX 319
             +KIVL+PR  KLGLGTAY+HG+K+ATG+FI+I+DADLSHHPKFIPE IKLQQ+ N D   
Sbjct:    66 DKIVLRPRGSKLGLGTAYIHGIKHATGDFIVIIDADLSHHPKFIPEFIKLQQEGNYDIVS 125

Query:   320 XXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
                         WDFKRKL+SRGAN+L+Q+LLRP  SDLTGSFRLYKK VLE  ++SCVS
Sbjct:   126 GTRYAGNGGVFGWDFKRKLISRGANFLSQVLLRPNASDLTGSFRLYKKDVLEKCIASCVS 185

Query:   380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             KGYVFQMEM++RARQ+ YTI EVPI+FVDR+YG SKLGGTEI QFAK LLYLFATT
Sbjct:   186 KGYVFQMEMLVRARQHGYTIAEVPITFVDRIYGTSKLGGTEIIQFAKNLLYLFATT 241

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=ISS

GO:0006486 "protein glycosylation" evidence=ISS

UNIPROTKB|H0Y368 DPM1 "Dolichol-phosphate mannosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 490 (177.5 bits), Expect = 3.0e-89, Sum P(2) = 3.0e-89
 Identities = 89/144 (61%), Positives = 112/144 (77%)

Query:   199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
             +NKY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT D A+QL+ IYG
Sbjct:    24 QNKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEIIIIDDGSPDGTRDVAEQLEKIYG 83

Query:   259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDXX 318
             S++I+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D  
Sbjct:    84 SDRILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFDIV 143

Query:   319 XXXXXXXXXXXXXWDFKRKLVSRG 342
                          WD KRK++S G
Sbjct:   144 SGTRYKGNGGVYGWDLKRKIISDG 167

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|O60762 DPM1 "Dolichol-phosphate mannosyltransferase" [Homo sapiens (taxid:9606)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 165/237 (69%), Positives = 195/237 (82%)

Query:   199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
             +NKY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT D A+QL+ IYG
Sbjct:    24 QNKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEIIIIDDGSPDGTRDVAEQLEKIYG 83

Query:   259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDXX 318
             S++I+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D  
Sbjct:    84 SDRILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFDIV 143

Query:   319 XXXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
                          WD KRK++SRGAN+LTQ+LLRPG SDLTGSFRLY+K+VLE L+  CV
Sbjct:   144 SGTRYKGNGGVYGWDLKRKIISRGANFLTQILLRPGASDLTGSFRLYRKEVLEKLIEKCV 203

Query:   379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct:   204 SKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

GO:0005537 "mannose binding" evidence=IEA

GO:0019673 "GDP-mannose metabolic process" evidence=IEA

GO:0043178 "alcohol binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006506 "GPI anchor biosynthetic process" evidence=IDA

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=IDA

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019348 "dolichol metabolic process" evidence=IDA

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=IDA

GO:0035268 "protein mannosylation" evidence=IDA

GO:0035269 "protein O-linked mannosylation" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA;TAS

GO:0006488 "dolichol-linked oligosaccharide biosynthetic process" evidence=TAS

GO:0006501 "C-terminal protein lipidation" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|J9NZX5 DPM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 164/237 (69%), Positives = 195/237 (82%)

Query:   199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
             ++KY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT D A+QL+ IYG
Sbjct:    24 QDKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEIIIIDDGSPDGTRDVAEQLEKIYG 83

Query:   259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDXX 318
             S+KI+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D  
Sbjct:    84 SDKILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFDIV 143

Query:   319 XXXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
                          WD KRK++SRGAN+LTQ+LLRPG SDLTGSFRLY+K+VL+ L+  CV
Sbjct:   144 SGTRYKGNGGVYGWDLKRKIISRGANFLTQILLRPGASDLTGSFRLYRKEVLQKLIEKCV 203

Query:   379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct:   204 SKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|Q4QR31 dpm1 "MGC114892 protein" [Xenopus laevis (taxid:8355)]

 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 169/244 (69%), Positives = 198/244 (81%)

Query:   194 SGDSVKN--KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAK 251
             SG+  K+  KY+VLLPTYNE+ENLPIIV+L+ +   +  Y YEIIVIDDGSPDGTL+ A+
Sbjct:     4 SGNKRKSGDKYSVLLPTYNERENLPIIVWLLVRCFRDSGYNYEIIVIDDGSPDGTLEVAQ 63

Query:   252 QLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 311
             QLQ IYGS+KI+L+PR KKLGLGTAY+HG+++ATGNFIIIMDADLSHHPKFIPE I+ Q+
Sbjct:    64 QLQKIYGSDKILLRPRAKKLGLGTAYVHGMQHATGNFIIIMDADLSHHPKFIPEFIRKQK 123

Query:   312 QENLDXXXXXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE 371
             + + D               WD KRKL+SRGAN++TQ+LLRPG SDLTGSFRLY+K VL+
Sbjct:   124 EGSYDIVSGTRYAGNGGVYGWDLKRKLISRGANFITQVLLRPGASDLTGSFRLYRKDVLQ 183

Query:   372 NLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYL 431
              LV  CVSKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL L
Sbjct:   184 KLVERCVSKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTL 243

Query:   432 FATT 435
             FATT
Sbjct:   244 FATT 247

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=ISS

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0006506 "GPI anchor biosynthetic process" evidence=ISS

GO:0035268 "protein mannosylation" evidence=ISS

GO:0035269 "protein O-linked mannosylation" evidence=ISS

ZFIN|ZDB-GENE-040801-115 dpm1 "dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit" [Danio rerio (taxid:7955)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 165/236 (69%), Positives = 193/236 (81%)

Query:   200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
             +KY+VLLPTYNE+ENLP+IV+L+ KY  E  Y YEIIVIDDGSPDGTL  A+QLQ IYG+
Sbjct:    15 DKYSVLLPTYNERENLPLIVWLLVKYFGESGYNYEIIVIDDGSPDGTLQIAEQLQKIYGA 74

Query:   260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDXXX 319
             +KI+L+PR +KLGLGTAY+HG+K+ATGNF+IIMDADLSHHPKFIP+ I+ Q++   D   
Sbjct:    75 DKILLRPRAEKLGLGTAYIHGIKHATGNFVIIMDADLSHHPKFIPQFIEKQKEGGYDLVS 134

Query:   320 XXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS 379
                         WD +RKL+SRGAN++TQ+LLRPG SDLTGSFRLYKK+VLE LV  CVS
Sbjct:   135 GTRYRGDGGVYGWDLRRKLISRGANFVTQVLLRPGASDLTGSFRLYKKEVLEKLVEQCVS 194

Query:   380 KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             KGYVFQMEM++RARQ  YTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct:   195 KGYVFQMEMIVRARQLGYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 250

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=ISS

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0035268 "protein mannosylation" evidence=ISS

GO:0035269 "protein O-linked mannosylation" evidence=ISS

GO:0006506 "GPI anchor biosynthetic process" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|A5GFZ5 DPM1 "Dolichol-phosphate mannosyltransferase" [Sus scrofa (taxid:9823)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 163/237 (68%), Positives = 194/237 (81%)

Query:   199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
             ++KY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT D A+QL  IYG
Sbjct:    23 QDKYSVLLPTYNERENLPLIVWLLVKSFSESGINYEIIIIDDGSPDGTRDIAEQLVKIYG 82

Query:   259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDXX 318
             S+KI+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D  
Sbjct:    83 SDKILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFDIV 142

Query:   319 XXXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
                          WD KRK++SRGAN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  CV
Sbjct:   143 SGTRYKGNGGVYGWDLKRKIISRGANFITQILLRPGASDLTGSFRLYRKEVLQKLIEKCV 202

Query:   379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct:   203 SKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 259

GO:0035269 "protein O-linked mannosylation" evidence=ISS

GO:0035268 "protein mannosylation" evidence=ISS

GO:0006506 "GPI anchor biosynthetic process" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=ISS

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=ISS

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IEA

GO:0019348 "dolichol metabolic process" evidence=IEA

UNIPROTKB|Q1JQ93 DPM1 "Dolichol-phosphate mannosyltransferase" [Bos taurus (taxid:9913)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 161/239 (67%), Positives = 195/239 (81%)

Query:   197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
             S ++KY+VLLPTYNE+ENLP IV+L+ K   E  + YEII+IDDGSPDGT D A+QL+ I
Sbjct:    22 SRQDKYSVLLPTYNERENLPFIVWLLVKSFSESGFNYEIIIIDDGSPDGTRDVAEQLEKI 81

Query:   257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
             YGS++I+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D
Sbjct:    82 YGSDRILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFD 141

Query:   317 XXXXXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
                            WD KRK++SR AN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  
Sbjct:   142 IVSGTRYKGNGGVYGWDLKRKIISRVANFITQILLRPGASDLTGSFRLYRKEVLQKLIGK 201

Query:   377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             C+SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct:   202 CISKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

GO:0035269 "protein O-linked mannosylation" evidence=ISS

GO:0035268 "protein mannosylation" evidence=ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0006506 "GPI anchor biosynthetic process" evidence=ISS

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=ISS

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=ISS

UNIPROTKB|C7FFR6 DPM1 "Mannosylphosphodolichol synthase" [Bos taurus (taxid:9913)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 161/239 (67%), Positives = 195/239 (81%)

Query:   197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
             S ++KY+VLLPTYNE+ENLP IV+L+ K   E  + YEII+IDDGSPDGT D A+QL+ I
Sbjct:    22 SRQDKYSVLLPTYNERENLPFIVWLLVKSFSESGFNYEIIIIDDGSPDGTRDIAEQLEKI 81

Query:   257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
             YGS++I+L+PR+KKLGLGTAY+HG+K+ATGN+IIIMDADLSHHPKFIPE I+ Q++ N D
Sbjct:    82 YGSDRILLRPREKKLGLGTAYIHGMKHATGNYIIIMDADLSHHPKFIPEFIRKQKEGNFD 141

Query:   317 XXXXXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
                            WD KRK++SR AN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  
Sbjct:   142 IVSGTRYKGNGGVYGWDLKRKIISRVANFITQILLRPGASDLTGSFRLYRKEVLQKLIGK 201

Query:   377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             C+SKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct:   202 CISKGYVFQMEMIVRARQLNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

GO:0035269 "protein O-linked mannosylation" evidence=IEA

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=IEA

GO:0019348 "dolichol metabolic process" evidence=IEA

GO:0006506 "GPI anchor biosynthetic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=IEA

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=IEA

MGI|MGI:1330239 Dpm1 "dolichol-phosphate (beta-D) mannosyltransferase 1" [Mus musculus (taxid:10090)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 160/239 (66%), Positives = 194/239 (81%)

Query:   197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI 256
             S ++KY+VLLPTYNE+ENLP+IV+L+ K   E    YEII+IDDGSPDGT + A+QL  I
Sbjct:    22 SRQDKYSVLLPTYNERENLPLIVWLLVKSFSESAINYEIIIIDDGSPDGTREVAEQLAEI 81

Query:   257 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLD 316
             YG ++I+L+PR+KKLGLGTAY+HG+K+ATGN++IIMDADLSHHPKFIPE I+ Q++ N D
Sbjct:    82 YGPDRILLRPREKKLGLGTAYIHGIKHATGNYVIIMDADLSHHPKFIPEFIRKQKEGNFD 141

Query:   317 XXXXXXXXXXXXXXXWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS 376
                            WD KRK++SRGAN++TQ+LLRPG SDLTGSFRLY+K+VL+ L+  
Sbjct:   142 IVSGTRYKGNGGVYGWDLKRKIISRGANFITQILLRPGASDLTGSFRLYRKEVLQKLIEK 201

Query:   377 CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
             CVSKGYVFQMEM++RARQ NYTIGEVPISFVDRVYGESKLGG EI  F K LL LFATT
Sbjct:   202 CVSKGYVFQMEMIVRARQMNYTIGEVPISFVDRVYGESKLGGNEIVSFLKGLLTLFATT 260

GO:0004169 "dolichyl-phosphate-mannose-protein mannosyltransferase activity" evidence=ISO

GO:0004582 "dolichyl-phosphate beta-D-mannosyltransferase activity" evidence=ISO;IMP

GO:0005537 "mannose binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0006506 "GPI anchor biosynthetic process" evidence=ISO;IMP

GO:0016020 "membrane" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0019348 "dolichol metabolic process" evidence=ISO;IMP

GO:0019673 "GDP-mannose metabolic process" evidence=ISO

GO:0033185 "dolichol-phosphate-mannose synthase complex" evidence=ISO

GO:0035268 "protein mannosylation" evidence=ISO

GO:0035269 "protein O-linked mannosylation" evidence=ISO

GO:0043178 "alcohol binding" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1JQ93	DPM1_BOVIN	2, ., 4, ., 1, ., 8, 3	0.7196	0.5494	0.9192	yes	N/A
O70152	DPM1_MOUSE	2, ., 4, ., 1, ., 8, 3	0.7154	0.5494	0.9192	yes	N/A
Q54LP3	DPM1_DICDI	2, ., 4, ., 1, ., 8, 3	0.5854	0.5356	0.9173	yes	N/A
Q9VIU7	DPM1_DROME	2, ., 4, ., 1, ., 8, 3	0.75	0.5425	0.9792	yes	N/A
O60762	DPM1_HUMAN	2, ., 4, ., 1, ., 8, 3	0.7426	0.5448	0.9115	yes	N/A
O14466	DPM1_SCHPO	2, ., 4, ., 1, ., 8, 3	0.6523	0.5356	0.9872	yes	N/A
Q9WU83	DPM1_CRIGR	2, ., 4, ., 1, ., 8, 3	0.7154	0.5494	0.8984	yes	N/A
A5GFZ5	DPM1_PIG	2, ., 4, ., 1, ., 8, 3	0.7341	0.5448	0.9150	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1.83	0.914
3rd Layer	2.4.1	0.921
4th Layer	2.4.1.80	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	435
PLN02726	243	PLN02726, PLN02726, dolichyl-phosphate beta-D-mann	1e-138
cd06442	224	cd06442, DPM1_like, DPM1_like represents putative	1e-125
PLN02726	243	PLN02726, PLN02726, dolichyl-phosphate beta-D-mann	1e-107
cd06442	224	cd06442, DPM1_like, DPM1_like represents putative	1e-100
cd04179	185	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_l	8e-69
cd04179	185	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_l	5e-59
cd04188	211	cd04188, DPG_synthase, DPG_synthase is involved in	2e-39
cd04187	181	cd04187, DPM1_like_bac, Bacterial DPM1_like enzyme	2e-34
cd04188	211	cd04188, DPG_synthase, DPG_synthase is involved in	8e-34
pfam00535	168	pfam00535, Glycos_transf_2, Glycosyl transferase f	6e-33
pfam00535	168	pfam00535, Glycos_transf_2, Glycosyl transferase f	1e-29
cd04187	181	cd04187, DPM1_like_bac, Bacterial DPM1_like enzyme	2e-27
COG0463	291	COG0463, WcaA, Glycosyltransferases involved in ce	1e-21
cd00761	156	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase	2e-20
PTZ00260	333	PTZ00260, PTZ00260, dolichyl-phosphate beta-glucos	4e-18
PRK10714	325	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy	4e-17
cd00761	156	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase	1e-16
COG0463	291	COG0463, WcaA, Glycosyltransferases involved in ce	2e-15
cd06423	180	cd06423, CESA_like, CESA_like is the cellulose syn	2e-14
PTZ00260	333	PTZ00260, PTZ00260, dolichyl-phosphate beta-glucos	3e-14
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	1e-12
cd02525	249	cd02525, Succinoglycan_BP_ExoA, ExoA is involved i	6e-12
cd06423	180	cd06423, CESA_like, CESA_like is the cellulose syn	1e-11
cd02525	249	cd02525, Succinoglycan_BP_ExoA, ExoA is involved i	1e-10
pfam13641	229	pfam13641, Glyco_tranf_2_3, Glycosyltransferase li	2e-10
PRK10714	325	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy	1e-09
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	2e-09
pfam13641	229	pfam13641, Glyco_tranf_2_3, Glycosyltransferase li	5e-09
cd04192	229	cd04192, GT_2_like_e, Subfamily of Glycosyltransfe	8e-09
PRK10073	328	PRK10073, PRK10073, putative glycosyl transferase;	5e-08
cd06439	251	cd06439, CESA_like_1, CESA_like_1 is a member of t	6e-08
pfam10111	278	pfam10111, Glyco_tranf_2_2, Glycosyltransferase li	7e-08
TIGR04182	293	TIGR04182, glyco_TIGR04182, glycosyltransferase, T	8e-08
PRK11204	420	PRK11204, PRK11204, N-glycosyltransferase; Provisi	2e-07
COG1216	305	COG1216, COG1216, Predicted glycosyltransferases [	4e-07
TIGR03937	407	TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glu	8e-07
PRK13915	306	PRK13915, PRK13915, putative glucosyl-3-phosphogly	8e-07
PRK10073	328	PRK10073, PRK10073, putative glycosyl transferase;	1e-06
pfam10111	278	pfam10111, Glyco_tranf_2_2, Glycosyltransferase li	1e-06
cd06421	234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	1e-06
cd06420	182	cd06420, GT2_Chondriotin_Pol_N, N-terminal domain	1e-06
cd04192	229	cd04192, GT_2_like_e, Subfamily of Glycosyltransfe	3e-06
cd02511	229	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS	6e-06
TIGR03469	384	TIGR03469, HpnB, hopene-associated glycosyltransfe	8e-06
TIGR03469	384	TIGR03469, HpnB, hopene-associated glycosyltransfe	8e-06
cd06439	251	cd06439, CESA_like_1, CESA_like_1 is a member of t	9e-06
TIGR04283	220	TIGR04283, glyco_like_mftF, transferase 2, rSAM/se	1e-05
cd06437	232	cd06437, CESA_CaSu_A2, Cellulose synthase catalyti	2e-05
cd02522	221	cd02522, GT_2_like_a, GT_2_like_a represents a gly	2e-05
cd06427	241	cd06427, CESA_like_2, CESA_like_2 is a member of t	4e-05
COG1216	305	COG1216, COG1216, Predicted glycosyltransferases [	5e-05
cd02511	229	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS	5e-05
cd04186	166	cd04186, GT_2_like_c, Subfamily of Glycosyltransfe	8e-05
cd04186	166	cd04186, GT_2_like_c, Subfamily of Glycosyltransfe	8e-05
cd02526	237	cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rh	8e-05
cd02526	237	cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rh	8e-05
PRK11204	420	PRK11204, PRK11204, N-glycosyltransferase; Provisi	1e-04
cd06433	202	cd06433, GT_2_WfgS_like, WfgS and WfeV are involve	2e-04
cd04196	214	cd04196, GT_2_like_d, Subfamily of Glycosyltransfe	2e-04
TIGR03030	713	TIGR03030, CelA, cellulose synthase catalytic subu	3e-04
cd06421	234	cd06421, CESA_CelA_like, CESA_CelA_like are involv	4e-04
cd06434	235	cd06434, GT2_HAS, Hyaluronan synthases catalyze po	4e-04
cd06433	202	cd06433, GT_2_WfgS_like, WfgS and WfeV are involve	5e-04
PRK13915	306	PRK13915, PRK13915, putative glucosyl-3-phosphogly	6e-04
cd06420	182	cd06420, GT2_Chondriotin_Pol_N, N-terminal domain	6e-04
cd04196	214	cd04196, GT_2_like_d, Subfamily of Glycosyltransfe	7e-04
TIGR03937	407	TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glu	8e-04
TIGR04182	293	TIGR04182, glyco_TIGR04182, glycosyltransferase, T	0.002
cd04185	202	cd04185, GT_2_like_b, Subfamily of Glycosyltransfe	0.002
cd04185	202	cd04185, GT_2_like_b, Subfamily of Glycosyltransfe	0.002
TIGR03965	467	TIGR03965, mycofact_glyco, mycofactocin system gly	0.002
TIGR03965	467	TIGR03965, mycofact_glyco, mycofactocin system gly	0.002
cd02510	299	cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo	0.003
cd02510	299	cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo	0.003

>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase

 Score =  394 bits (1014), Expect = e-138
 Identities = 154/238 (64%), Positives = 192/238 (80%), Gaps = 1/238 (0%)

Query: 198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY 257
              KY++++PTYNE+ N+ +IVYLI K + +    +EIIV+DDGSPDGT D  KQLQ +Y
Sbjct: 7   GAMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVY 65

Query: 258 GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDV 317
           G ++I+L+PR  KLGLGTAY+HGLK+A+G+F++IMDADLSHHPK++P  IK Q++   D+
Sbjct: 66  GEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADI 125

Query: 318 VTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC 377
           VTGTRYV  GGV+GWD +RKL SRGAN L Q LL PGVSDLTGSFRLYK+  LE+LVSS 
Sbjct: 126 VTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSV 185

Query: 378 VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT 435
           VSKGYVFQME+++RA +  Y I EVPI+FVDRVYGESKLGG+EI Q+ K LLYL  TT
Sbjct: 186 VSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGESKLGGSEIVQYLKGLLYLLLTT 243

Length = 243

>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1

 Score =  360 bits (926), Expect = e-125
 Identities = 117/228 (51%), Positives = 160/228 (70%), Gaps = 4/228 (1%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
           +++PTYNE+EN+P ++  +   +      YEIIV+DD SPDGT +  ++L   Y   ++ 
Sbjct: 1   IIIPTYNERENIPELIERLDAALK--GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVR 56

Query: 264 LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY 323
           L  R  K GLG+AY+ G K A G+ I++MDADLSH P++IPE+++ Q +   D+V G+RY
Sbjct: 57  LIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRY 116

Query: 324 VGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV 383
           V  GGV GW  KRKL+SRGAN L +LLL   VSD T  FR Y+++VLE L+ S VSKGY 
Sbjct: 117 VEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYK 176

Query: 384 FQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYL 431
           FQ+E+++RAR+  Y I EVPI+FVDR +GESKLGG EI ++ K LL L
Sbjct: 177 FQLELLVRARRLGYRIVEVPITFVDREHGESKLGGKEIVEYLKGLLRL 224

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 224

>gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase

 Score =  317 bits (814), Expect = e-107
 Identities = 122/178 (68%), Positives = 149/178 (83%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
           +EIIV+DDGSPDGT D  KQLQ +YG ++I+L+PR  KLGLGTAY+HGLK+A+G+F++IM
Sbjct: 41  FEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIM 100

Query: 68  DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 127
           DADLSHHPK++P  IK Q++   D+VTGTRYV  GGV+GWD +RKL SRGAN L Q LL 
Sbjct: 101 DADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW 160

Query: 128 PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRV 185
           PGVSDLTGSFRLYK+  LE+LVSS VSKGYVFQME+++RA +  Y I EVPI+FVDRV
Sbjct: 161 PGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRV 218

Length = 243

>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1

 Score =  297 bits (762), Expect = e-100
 Identities = 96/181 (53%), Positives = 127/181 (70%), Gaps = 2/181 (1%)

Query: 5   NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
              YEIIV+DD SPDGT +  ++L   Y   ++ L  R  K GLG+AY+ G K A G+ I
Sbjct: 25  GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAYIEGFKAARGDVI 82

Query: 65  IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL 124
           ++MDADLSH P++IPE+++ Q +   D+V G+RYV  GGV GW  KRKL+SRGAN L +L
Sbjct: 83  VVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARL 142

Query: 125 LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDR 184
           LL   VSD T  FR Y+++VLE L+ S VSKGY FQ+E+++RAR+  Y I EVPI+FVDR
Sbjct: 143 LLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDR 202

Query: 185 V 185
            
Sbjct: 203 E 203

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 224

>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

 Score =  216 bits (552), Expect = 8e-69
 Identities = 76/189 (40%), Positives = 117/189 (61%), Gaps = 4/189 (2%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
           V++P YNE+EN+P +V  +   ++EG Y YEIIV+DDGS DGT + A++L +     +++
Sbjct: 1   VVIPAYNEEENIPELVERLLAVLEEG-YDYEIIVVDDGSTDGTAEIARELAARVPRVRVI 59

Query: 264 LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY 323
              R    G G A   G K A G+ ++ MDADL H P+ IP++++   +   DVV G+R+
Sbjct: 60  RLSRNF--GKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117

Query: 324 VGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV 383
           V  GG  G    R+L SR  N+L +LLL   +SD    FRL++++VLE L+S   S G+ 
Sbjct: 118 VR-GGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFE 176

Query: 384 FQMEMVIRA 392
           F +E+++ A
Sbjct: 177 FGLELLVGA 185

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 185

>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

 Score =  190 bits (486), Expect = 5e-59
 Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 3/165 (1%)

Query: 3   EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN 62
           E  Y YEIIV+DDGS DGT + A++L +     +++   R    G G A   G K A G+
Sbjct: 24  EEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNF--GKGAAVRAGFKAARGD 81

Query: 63  FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT 122
            ++ MDADL H P+ IP++++   +   DVV G+R+V  GG  G    R+L SR  N+L 
Sbjct: 82  IVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVR-GGGAGMPLLRRLGSRLFNFLI 140

Query: 123 QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRA 167
           +LLL   +SD    FRL++++VLE L+S   S G+ F +E+++ A
Sbjct: 141 RLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLVGA 185

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 185

>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation

 Score =  140 bits (355), Expect = 2e-39
 Identities = 67/214 (31%), Positives = 114/214 (53%), Gaps = 5/214 (2%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDE-GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           V++P YNE++ LP  +    +Y++E  ++ YEIIV+DDGS DGT + A++L     +   
Sbjct: 1   VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIR 60

Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 322
           VL    K  G G A   G+  A G++I+  DADL+   + + ++ +  +    D+  G+R
Sbjct: 61  VLT-LPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSR 119

Query: 323 YV-GTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG 381
               +  V    + R L+ RG N+L +LLL  G+ D    F+L+ +     L      + 
Sbjct: 120 AHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLER 179

Query: 382 YVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
           + F +E+++ AR+  Y I EVP+ +V+     SK
Sbjct: 180 WAFDVELLVLARRLGYPIEEVPVRWVEI--PGSK 211

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. Length = 211

>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1

 Score =  126 bits (318), Expect = 2e-34
 Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 16/176 (9%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
           +++P YNE+ENLP +   +   ++   Y YEII +DDGS D TL+  ++L +     K++
Sbjct: 1   IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVI 60

Query: 264 LKPRKKKL----GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
                 +L    G   A + GL +A G+ +I MDADL   P+ IPEM+  + +E  DVV 
Sbjct: 61  ------RLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLA-KWEEGYDVVY 113

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVS 375
           G R           + ++L S+    L   L    + D  G FRL  ++V++ L+ 
Sbjct: 114 GVRKNRKES-----WLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 181

>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation

 Score =  125 bits (316), Expect = 8e-34
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 2/180 (1%)

Query: 5   NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
           ++ YEIIV+DDGS DGT + A++L     +   VL    K  G G A   G+  A G++I
Sbjct: 28  SFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLT-LPKNRGKGGAVRAGMLAARGDYI 86

Query: 65  IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYV-GTGGVYGWDFKRKLVSRGANYLTQ 123
           +  DADL+   + + ++ +  +    D+  G+R    +  V    + R L+ RG N+L +
Sbjct: 87  LFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVR 146

Query: 124 LLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD 183
           LLL  G+ D    F+L+ +     L      + + F +E+++ AR+  Y I EVP+ +V+
Sbjct: 147 LLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVE 206

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. Length = 211

>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2

 Score =  121 bits (306), Expect = 6e-33
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 6/172 (3%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           +V++PTYNE++ L      +   +++    +EIIV+DDGS DGT++ A++        ++
Sbjct: 1   SVIIPTYNEEKYLE---ETLESLLNQTYKNFEIIVVDDGSTDGTVEIAEEYAKNDP--RV 55

Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 322
            +   ++ LG   A   GLK ATG++I  +DAD    P ++ ++++L ++   D+V G+R
Sbjct: 56  RVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIGSR 115

Query: 323 YVGTGGVYGWDF-KRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 373
            V  G    +    R  +      L    L   V  L GS  LY+++VLE L
Sbjct: 116 VVINGETRLYGRALRFELLLLLGKLGARSLGLKVLFLIGSNALYRREVLEEL 167

Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Length = 168

>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2

 Score =  112 bits (282), Expect = 1e-29
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)

Query: 6   YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 65
             +EIIV+DDGS DGT++ A++        ++ +   ++ LG   A   GLK ATG++I 
Sbjct: 26  KNFEIIVVDDGSTDGTVEIAEEYAKNDP--RVRVIRLEENLGKAAARNAGLKLATGDYIA 83

Query: 66  IMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF-KRKLVSRGANYLTQL 124
            +DAD    P ++ ++++L ++   D+V G+R V  G    +    R  +      L   
Sbjct: 84  FLDADDEVAPDWLEKLVELLEKNGADIVIGSRVVINGETRLYGRALRFELLLLLGKLGAR 143

Query: 125 LLRPGVSDLTGSFRLYKKQVLENL 148
            L   V  L GS  LY+++VLE L
Sbjct: 144 SLGLKVLFLIGSNALYRREVLEEL 167

Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Length = 168

>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1

 Score =  107 bits (269), Expect = 2e-27
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 16/154 (10%)

Query: 1   MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKL----GLGTAYMHGL 56
           ++   Y YEII +DDGS D TL+  ++L +     K++      +L    G   A + GL
Sbjct: 23  LESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVI------RLSRNFGQQAALLAGL 76

Query: 57  KYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR 116
            +A G+ +I MDADL   P+ IPEM+  + +E  DVV G R           + ++L S+
Sbjct: 77  DHARGDAVITMDADLQDPPELIPEMLA-KWEEGYDVVYGVRKNRKES-----WLKRLTSK 130

Query: 117 GANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVS 150
               L   L    + D  G FRL  ++V++ L+ 
Sbjct: 131 LFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 181

>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 94.0 bits (232), Expect = 1e-21
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 21/230 (9%)

Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
             K +V++PTYNE+E LP  +  +     +    +EIIV+DDGS DGT + A +  +   
Sbjct: 2   MPKVSVVIPTYNEEEYLPEALESLLNQTYK---DFEIIVVDDGSTDGTTEIAIEYGAKDV 58

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
             +++    ++  GLG A   GL+YA G++I+ +DAD  H P+ IP +         D  
Sbjct: 59  --RVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQHPPELIPLV-----AAGGDGD 111

Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
              R      ++        + +    L   LL   + D  G  RL  +  ++ L +   
Sbjct: 112 YIARLDDRDDIWLPRKLLSKLVK---LLGNRLLGVLIPDGFGDLRLLVRDAVDGLRA--F 166

Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKAL 428
            +G    + +++R          +    ++ +     LG ++     K L
Sbjct: 167 LEGRSRFLRLLLRKLVL------IRREVLEYLLLYRLLGASKRVLLGKLL 210

Length = 291

>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

 Score = 87.6 bits (217), Expect = 2e-20
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 6/119 (5%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
           V++P YNE+  L   +  +          +E+IV+DDGS DGTL+  ++          V
Sbjct: 1   VIIPAYNEEPYLERCLESLLAQ---TYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRV 57

Query: 264 LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVTGT 321
           +   ++  GL  A   GLK A G +I+ +DAD    P ++  ++  L      D V G 
Sbjct: 58  IN--EENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP 114

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities. Length = 156

>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase; Provisional

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 59/219 (26%), Positives = 112/219 (51%), Gaps = 14/219 (6%)

Query: 203 TVLLPTYNEKENLPI-----IVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQL--QS 255
           ++++P YNE++ LP      I YL ++   +  + YEII+++DGS D TL  AK    Q+
Sbjct: 73  SIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQN 132

Query: 256 IYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD----LSHHPKFIPEMIKLQQ 311
           I  +  I L    +  G G A   G+  + G +I+++DAD    +    K    M+K++Q
Sbjct: 133 INPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQ 192

Query: 312 QENLDVVTGTR--YVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQV 369
              L +V G+R   V +  V    + R ++  G +++   +    + D    F+L+ ++ 
Sbjct: 193 NG-LGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQCGFKLFTRET 251

Query: 370 LENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD 408
              +  S   + + F +E+V+ A++ N  I EVP+++ +
Sbjct: 252 ARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNWTE 290

Length = 333

>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 14/217 (6%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
            K +V++P YNE+E+LP ++   T   +     YEI++IDDGS D + +   +      S
Sbjct: 6   KKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDS 65

Query: 260 EKI-VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
             + +L  R    G  +A M G  + TG+ II +DADL + P+ IP ++  +  E  DVV
Sbjct: 66  HIVAILLNRN--YGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVA-KADEGYDVV 122

Query: 319 TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV 378
              R       +     RK  S+  N L Q      + D     R Y++ +++ ++  C 
Sbjct: 123 GTVRQNRQDSWF-----RKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAML-HCH 176

Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
            +     +     AR+    I E+P+   +R +G+SK
Sbjct: 177 ERSTFIPILANTFARR---AI-EIPVHHAEREFGDSK 209

Length = 325

>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

 Score = 76.8 bits (189), Expect = 1e-16
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
            +E+IV+DDGS DGTL+  ++          V+   ++  GL  A   GLK A G +I+ 
Sbjct: 26  NFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVIN--EENQGLAAARNAGLKAARGEYILF 83

Query: 67  MDADLSHHPKFIPEMIK-LQQQENLDVVTGT 96
           +DAD    P ++  ++  L      D V G 
Sbjct: 84  LDADDLLLPDWLERLVAELLADPEADAVGGP 114

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities. Length = 156

>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 75.9 bits (185), Expect = 2e-15
 Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 10/144 (6%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
            +EIIV+DDGS DGT + A +  +     +++    ++  GLG A   GL+YA G++I+ 
Sbjct: 32  DFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGLGAARNAGLEYARGDYIVF 89

Query: 67  MDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL 126
           +DAD  H P+ IP +         D     R      ++        + +    L   LL
Sbjct: 90  LDADDQHPPELIPLV-----AAGGDGDYIARLDDRDDIWLPRKLLSKLVK---LLGNRLL 141

Query: 127 RPGVSDLTGSFRLYKKQVLENLVS 150
              + D  G  RL  +  ++ L +
Sbjct: 142 GVLIPDGFGDLRLLVRDAVDGLRA 165

Length = 291

>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily

 Score = 71.1 bits (175), Expect = 2e-14
 Identities = 43/183 (23%), Positives = 82/183 (44%), Gaps = 27/183 (14%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           +++P YNE+  +   +    + +   +YP  E+IV+DDGS D TL+  ++L ++Y    +
Sbjct: 1   IIVPAYNEEAVIERTI----ESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVL 56

Query: 263 VL--KPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVT 319
           V+  K    K G   A   GL++A G+ ++++DAD    P  +  ++        +  V 
Sbjct: 57  VVRDKENGGKAG---ALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQ 113

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGAN---YLTQLLLRPGVSDL------TGSFRLYKKQVL 370
           G   V        +    L++R           L R   S L      +G+F  ++++ L
Sbjct: 114 GRVRVR-------NGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREAL 166

Query: 371 ENL 373
             +
Sbjct: 167 REV 169

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan. Length = 180

>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase; Provisional

 Score = 72.9 bits (179), Expect = 3e-14
 Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 9/189 (4%)

Query: 3   EGNYPYEIIVIDDGSPDGTLDAAKQL--QSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 60
           +  + YEII+++DGS D TL  AK    Q+I  +  I L    +  G G A   G+  + 
Sbjct: 103 DPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASR 162

Query: 61  GNFIIIMDAD----LSHHPKFIPEMIKLQQQENLDVVTGTR--YVGTGGVYGWDFKRKLV 114
           G +I+++DAD    +    K    M+K++Q   L +V G+R   V +  V    + R ++
Sbjct: 163 GKYILMVDADGATDIDDFDKLEDIMLKIEQNG-LGIVFGSRNHLVDSDVVAKRKWYRNIL 221

Query: 115 SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTI 174
             G +++   +    + D    F+L+ ++    +  S   + + F +E+V+ A++ N  I
Sbjct: 222 MYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPI 281

Query: 175 GEVPISFVD 183
            EVP+++ +
Sbjct: 282 AEVPVNWTE 290

Length = 333

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 68.8 bits (168), Expect = 1e-12
 Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 201 KYTVLLPTYNE-KENLPIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYG 258
           K +V++P YNE  E L   +  +       +YP YE+IV+DDGS D T +  ++L + YG
Sbjct: 55  KVSVIIPAYNEEPEVLEETLESLLSQ----DYPRYEVIVVDDGSTDETYEILEELGAEYG 110

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV 318
               V+ P KK  G   A  +GLK A G+ ++I+DAD    P  + E++   +   +  V
Sbjct: 111 PNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAV 170

Query: 319 TGTRYVGTGGVY-GWDFKRKLVSRGANYLTQLLLRPGVSD------LTGSFRLYKKQVLE 371
            GT  +           + + +                S       L+GS   +++  LE
Sbjct: 171 VGTPRIRNRPDPSNLLGRIQAIE---YLSAFYFRLRAASKGGLISFLSGSSSAFRRSALE 227

Query: 372 NL 373
            +
Sbjct: 228 EV 229

Length = 439

>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan

 Score = 64.9 bits (159), Expect = 6e-12
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 26/183 (14%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           ++++P  NE++    I  L+   +   +YP    EIIV+D GS DGT +  ++  +    
Sbjct: 3   SIIIPVRNEEKY---IEELLESLL-NQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKD-- 56

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK-FIPEMIKLQQQENLDVV 318
            +I L    K++        G++ + G+ II +DA  + +PK +I E+++  ++   D V
Sbjct: 57  PRIRLIDNPKRI-QSAGLNIGIRNSRGDIIIRVDAH-AVYPKDYILELVEALKRTGADNV 114

Query: 319 TGTRYV----GTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL----TGSFRLYKKQVL 370
            G                     L S G+ Y      R G   +    T     Y+++V 
Sbjct: 115 GGPMETIGESKFQKAIAVAQSSPLGSGGSAY------RGGAVKIGYVDTVHHGAYRREVF 168

Query: 371 ENL 373
           E +
Sbjct: 169 EKV 171

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. Length = 249

>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 23/157 (14%)

Query: 5   NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL--KPRKKKLGLGTAYMHGLKYATG 61
           +YP  E+IV+DDGS D TL+  ++L ++Y    +V+  K    K G   A   GL++A G
Sbjct: 23  DYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAG---ALNAGLRHAKG 79

Query: 62  NFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN- 119
           + ++++DAD    P  +  ++        +  V G   V        +    L++R    
Sbjct: 80  DIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVR-------NGSENLLTRLQAI 132

Query: 120 --YLTQLLLRPGVSDL------TGSFRLYKKQVLENL 148
                  L R   S L      +G+F  ++++ L  +
Sbjct: 133 EYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALREV 169

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan. Length = 180

>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 19/151 (12%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
             EIIV+D GS DGT +  ++  +     +I L    K++        G++ + G+ II 
Sbjct: 31  LIEIIVVDGGSTDGTREIVQEYAAKD--PRIRLIDNPKRI-QSAGLNIGIRNSRGDIIIR 87

Query: 67  MDADLSHHPK-FIPEMIKLQQQENLDVVTGTRYV----GTGGVYGWDFKRKLVSRGANYL 121
           +DA  + +PK +I E+++  ++   D V G                     L S G+ Y 
Sbjct: 88  VDAH-AVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAY- 145

Query: 122 TQLLLRPGVSDL----TGSFRLYKKQVLENL 148
                R G   +    T     Y+++V E +
Sbjct: 146 -----RGGAVKIGYVDTVHHGAYRREVFEKV 171

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. Length = 249

>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 6/127 (4%)

Query: 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
           +  V++PT+NE     ++   +   + +     E+IV+ DGS D TLD A++L + Y   
Sbjct: 2   RVAVVVPTWNE---DKVLGRTLRSILAQDYPRLEVIVVVDGSDDETLDVARELAAAYPDV 58

Query: 261 KIVLKPRKKKLGLGT---AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDV 317
           ++ +  R +  G      A    L+    + ++++DAD    P  +  ++     + +  
Sbjct: 59  RVHVVRRPRPPGPTGKARALNEALRAIKSDLVVLLDADSVVDPDTLRRLLPFFLSKGVGA 118

Query: 318 VTGTRYV 324
           V G  +V
Sbjct: 119 VQGPVFV 125

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 229

>gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI-VLKPRKKKLGLGTAYMHGLKYATGNFII 65
            YEI++IDDGS D + +   +      S  + +L  R    G  +A M G  + TG+ II
Sbjct: 38  EYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRN--YGQHSAIMAGFSHVTGDLII 95

Query: 66  IMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL 125
            +DADL + P+ IP ++  +  E  DVV   R       +     RK  S+  N L Q  
Sbjct: 96  TLDADLQNPPEEIPRLVA-KADEGYDVVGTVRQNRQDSWF-----RKTASKMINRLIQRT 149

Query: 126 LRPGVSDLTGSFRLYKKQVLE 146
               + D     R Y++ +++
Sbjct: 150 TGKAMGDYGCMLRAYRRHIVD 170

Length = 325

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 11/152 (7%)

Query: 5   NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
           +YP YE+IV+DDGS D T +  ++L + YG    V+ P KK  G   A  +GLK A G+ 
Sbjct: 81  DYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDV 140

Query: 64  IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY-GWDFKRKLVSRGANYLT 122
           ++I+DAD    P  + E++   +   +  V GT  +           + + +        
Sbjct: 141 VVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIE---YLSA 197

Query: 123 QLLLRPGVSD------LTGSFRLYKKQVLENL 148
                   S       L+GS   +++  LE +
Sbjct: 198 FYFRLRAASKGGLISFLSGSSSAFRRSALEEV 229

Length = 439

>gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 32/200 (16%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGT---AYMHGLKYATGNF 63
             E+IV+ DGS D TLD A++L + Y   ++ +  R +  G      A    L+    + 
Sbjct: 30  RLEVIVVVDGSDDETLDVARELAAAYPDVRVHVVRRPRPPGPTGKARALNEALRAIKSDL 89

Query: 64  IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGG----------VYGWDFKRKL 113
           ++++DAD    P  +  ++     + +  V G  +V                    +   
Sbjct: 90  VVLLDADSVVDPDTLRRLLPFFLSKGVGAVQGPVFVLNLRTAVAPLYALEFALRHLRFMA 149

Query: 114 VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL----VSSCVSKGYVFQMEMVIRARQ 169
           + R            GV+ L GS  L+++ VLE +        + +     +    R R+
Sbjct: 150 LRRAL----------GVAPLAGSGSLFRRSVLEEIGGFDPGFLLGEDKELGL----RLRR 195

Query: 170 YNYTIGEVPISFVDRVVFTT 189
             +    VP + V   +  +
Sbjct: 196 AGWRTAYVPGAAV-YELSPS 214

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 229

>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 26/146 (17%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGT---LDAA-----KQ 252
           V++   NE ENLP ++  ++      +YP   +E+I++DD S DGT   L+ A      Q
Sbjct: 1   VVIAARNEAENLPRLLQSLSAL----DYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQ 56

Query: 253 LQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ 312
           L+ +  S    +  +K       A    +K A G++I+  DAD      ++   +   Q+
Sbjct: 57  LKILNNSRV-SISGKKN------ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQK 109

Query: 313 ENLDVVTGTRYVGTGGVYGWDFKRKL 338
           E + +V G          G     K 
Sbjct: 110 EQIGLVAG----PVIYFKGKSLLAKF 131

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 229

>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 10/136 (7%)

Query: 196 DSVKNKYTVLLPTYNEKENLP-IIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQ 254
            +   K ++++P YN  ++    +  LI +         EII+++DGS D +++ AK   
Sbjct: 2   MNSTPKLSIIIPLYNAGKDFRAFMESLIAQTWTA----LEIIIVNDGSTDNSVEIAKHYA 57

Query: 255 SIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQEN 314
             Y   +++    +   G+  A   GL  ATG ++   DAD   +P     ++ +  +++
Sbjct: 58  ENYPHVRLL---HQANAGVSVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDD 114

Query: 315 LDVVT--GTRYVGTGG 328
           LDV            G
Sbjct: 115 LDVAQCNADWCFRDTG 130

Length = 328

>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 12/133 (9%)

Query: 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIY 257
             T+++P YNE+    I   L        +YP    EIIV+ DGS DGT + A++    Y
Sbjct: 30  TVTIIIPAYNEEAV--IEAKLENLLAL--DYPRDRLEIIVVSDGSTDGTAEIARE----Y 81

Query: 258 GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDV 317
             + + L    ++ G   A    L  ATG  ++  DA+    P  +  +++     ++  
Sbjct: 82  ADKGVKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGA 141

Query: 318 VTGT-RYVGTGGV 329
           V+G    V  GG 
Sbjct: 142 VSGELVIVDGGGS 154

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Length = 251

>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 203 TVLLPTYNEKENLPII--VYLITKYMDEGNYPY--EIIVIDDGSPDGTL-DAAKQLQSIY 257
           +V++P Y       I+  +      +         EIIV+D  SP     +  K +    
Sbjct: 1   SVIIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSFAKELKKIIAKNG 60

Query: 258 GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 311
               I  K  K       A   G +Y++ +FI  +D D    P  + ++IK  Q
Sbjct: 61  AINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFLDVDCLISPDTLEKIIKHFQ 114

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 278

>gnl|CDD|200433 TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family

 Score = 53.1 bits (128), Expect = 8e-08
 Identities = 55/237 (23%), Positives = 102/237 (43%), Gaps = 33/237 (13%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
            VL+PT NE      I  +I  + + G    +I+VID  S DGT + AK+  +     ++
Sbjct: 3   CVLIPTLNEA---ATIGDVIDGFQELGYS--DILVIDGNSTDGTQEIAKEAGA-----RV 52

Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR 322
           V++  K K   G A     +     +++++D D ++ P     +++       D V G R
Sbjct: 53  VIQSGKGK---GQAVREAFELIDAPYVLMLDGDGTYLPADADALLEPLLSGRADHVIGNR 109

Query: 323 YVGTGGVYGWDFKRKLVSRGANYLTQLLLR--PGV--SDLTGSFRLYKKQVLENLVSSCV 378
           +          F R  ++   N L   L R   GV   D+   +R + ++ +  +  +  
Sbjct: 110 FADMEPG---AFTR--LNLVGNRLINRLFRIIHGVDLRDILSGYRAFTRESIRRMELT-- 162

Query: 379 SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYG-ESKLG--------GTEIFQFAK 426
             G+  + E+ +   + N  +  VPI++  R  G ++KL         G  I++ AK
Sbjct: 163 ETGFEIETEIAVECVKKNLRVEVVPITYRARPGGSDTKLNPLRDGFKIGLTIYRLAK 219

Members of this family are glycosyltransferases restricted to the archaea. All but two members are from species with the PGF-CTERM/archaeosortase A system, a proposed maturation system for exported, glycosylated proteins as are found often in S-layers. Length = 293

>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 203 TVLLPTYNEKENL-PIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
           ++L+P YNE EN+   I +L+        YP YE+I I+DGS D T +   +L +     
Sbjct: 57  SILVPCYNEGENVEETISHLLAL-----RYPNYEVIAINDGSSDNTGEILDRLAAQI--P 109

Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVT 319
           ++ +    +  G   A   G   A   +++ +D D    P     M++       +  VT
Sbjct: 110 RLRVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVT 169

Query: 320 G 320
           G
Sbjct: 170 G 170

Length = 420

>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 49/234 (20%), Positives = 96/234 (41%), Gaps = 35/234 (14%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           ++++ TYN  E+L  +  L +           I+V+D+GS DG+L+A K          +
Sbjct: 6   SIIIVTYNRGEDL--VECLASLAAQT-YPDDVIVVVDNGSTDGSLEALK----ARFFPNV 58

Query: 263 VLKPRKKKLGLGTAYMHGLKYATGN---FIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
            L    + LG    +  G+KYA      ++++++ D    P  + E++K  +++    V 
Sbjct: 59  RLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118

Query: 320 GTRYVGTGG---VYGWDFKRKLVSRGANYLTQLLLRP-------GVSDLTGSFRLYKKQV 369
           G           +     +   ++ G      L + P        V+ L+G+  L +++ 
Sbjct: 119 GPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREA 178

Query: 370 LENLVSSCVSKG--------YVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
            E +       G        Y   +++ +RAR+  Y I  VP + +    G SK
Sbjct: 179 FEKV-------GGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225

Length = 305

>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine synthase

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 203 TVLLPTYNEKENL-PIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
           ++L+P YNE  N+   I +L+        YP +EII I+DGS D T +   +L +     
Sbjct: 48  SILVPCYNEGANVEETISHLLAL-----RYPNFEIIAINDGSKDNTAEILDRLAAQD--P 100

Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVT 319
           ++ +    +  G   A   GL  A   +++ +D D    P     M++       +  VT
Sbjct: 101 RLRVIHLAENQGKANALNTGLLAAKYEYLVCIDGDALLDPDAAYWMVEHFLSNPRVGAVT 160

Query: 320 G 320
           G
Sbjct: 161 G 161

Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages. Length = 407

>gnl|CDD|237556 PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 8/106 (7%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQL-QSIYGSEK 261
           +V+LP  NE+E +  +V  I   + E     E+IVID GS D T + A      +   E+
Sbjct: 34  SVVLPALNEEETVGKVVDSIRPLLMEPL-VDELIVIDSGSTDATAERAAAAGARVVSREE 92

Query: 262 IV--LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIP 304
           I+  L PR  K   G A    L   TG+ ++ +DADL +  P F+P
Sbjct: 93  ILPELPPRPGK---GEALWRSLAATTGDIVVFVDADLINFDPMFVP 135

Length = 306

>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
            EII+++DGS D +++ AK     Y   +++    +   G+  A   GL  ATG ++   
Sbjct: 36  LEIIIVNDGSTDNSVEIAKHYAENYPHVRLL---HQANAGVSVARNTGLAVATGKYVAFP 92

Query: 68  DADLSHHPKFIPEMIKLQQQENLDVVT--GTRYVGTGG 103
           DAD   +P     ++ +  +++LDV            G
Sbjct: 93  DADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTG 130

Length = 328

>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 9   EIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
           EIIV+D  SP     +  K +        I  K  K       A   G +Y++ +FI  +
Sbjct: 36  EIIVVDGDSPLSFAKELKKIIAKNGAINYISHKTHKDLFSPAKARNRGAEYSSSDFIFFL 95

Query: 68  DADLSHHPKFIPEMIKLQQ 86
           D D    P  + ++IK  Q
Sbjct: 96  DVDCLISPDTLEKIIKHFQ 114

Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 278

>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 16/106 (15%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
           V +PTYNE   +          +D   YP     + V+DDG        A +L   YG  
Sbjct: 5   VFIPTYNEPLEIVRKTLRAALAID---YPHDKLRVYVLDDGRRPELRALAAELGVEYGYR 61

Query: 261 KIV-LKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPE 305
            +     R  K G      + L + TG+F+ I+DAD       +P 
Sbjct: 62  YLTRPDNRHAKAG---NLNNALAHTTGDFVAILDAD------HVPT 98

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. Length = 234

>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 9/109 (8%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
           +++ TYN  E L +++      +++   P+E+I+ DDGS + T +  ++ +S      I 
Sbjct: 1   LIITTYNRPEALELVL---KSVLNQSILPFEVIIADDGSTEETKELIEEFKS---QFPIP 54

Query: 264 LKP-RKKKLG--LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 309
           +K   ++  G          +  A G+++I +D D   HP FI + I+L
Sbjct: 55  IKHVWQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCIPHPDFIADHIEL 103

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix. Length = 182

>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 22/120 (18%)

Query: 5   NYP---YEIIVIDDGSPDGT---LDAA-----KQLQSIYGSEKIVLKPRKKKLGLGTAYM 53
           +YP   +E+I++DD S DGT   L+ A      QL+ +  S    +  +K       A  
Sbjct: 23  DYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRV-SISGKKN------ALT 75

Query: 54  HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL 113
             +K A G++I+  DAD      ++   +   Q+E + +V G          G     K 
Sbjct: 76  TAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAG----PVIYFKGKSLLAKF 131

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 229

>gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 20/96 (20%)

Query: 203 TVLLPTYNEKENLP-II--VYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           +V++ T NE+ N+   +  V              EIIV+D GS D T++ AK+    YG+
Sbjct: 3   SVVIITKNEERNIERCLESVKWAVD---------EIIVVDSGSTDRTVEIAKE----YGA 49

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD 295
            K+    ++   G G      L+ AT ++++ +DAD
Sbjct: 50  -KVY---QRWWDGFGAQRNFALELATNDWVLSLDAD 81

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. Length = 229

>gnl|CDD|213815 TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 18/105 (17%)

Query: 5   NYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEK--IVL--KPRKK----KL-----GLG 49
           +YP    +I++DD S DGT D A+     YG      V+  +P       KL     G+ 
Sbjct: 66  DYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIA 125

Query: 50  TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 94
            A          +++++ DAD++H P  +  ++   + E LD+V+
Sbjct: 126 AA---RTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. Length = 384

>gnl|CDD|213815 TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB

 Score = 47.4 bits (113), Expect = 8e-06
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 18/105 (17%)

Query: 230 NYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEK--IVL--KPRKK----KL-----GLG 274
           +YP    +I++DD S DGT D A+     YG      V+  +P       KL     G+ 
Sbjct: 66  DYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIA 125

Query: 275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
            A          +++++ DAD++H P  +  ++   + E LD+V+
Sbjct: 126 AA---RTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVS 167

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. Length = 384

>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 5   NYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG 61
           +YP    EIIV+ DGS DGT + A++    Y  + + L    ++ G   A    L  ATG
Sbjct: 55  DYPRDRLEIIVVSDGSTDGTAEIARE----YADKGVKLLRFPERRGKAAALNRALALATG 110

Query: 62  NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT-RYVGTGGV 104
             ++  DA+    P  +  +++     ++  V+G    V  GG 
Sbjct: 111 EIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGS 154

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Length = 251

>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2, rSAM/selenodomain-associated

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 17/95 (17%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           ++++P  NE   LP ++  +     +     E+IV+D GS DGT++ A+ L       K+
Sbjct: 2   SIIIPVLNEAATLPELLADLQALPGDA----EVIVVDGGSTDGTVEIARSL-----GAKV 52

Query: 263 VLKPRKKKLGLGTAY-M-HGLKYATGNFIIIMDAD 295
           +  P+      G A  M  G   A G+ ++ + AD
Sbjct: 53  IHSPK------GRARQMNAGAALAKGDILLFLHAD 81

This enzyme may transfer a nucleotide, or it sugar moiety, as part of a biosynthetic pathway. Other proposed members of the pathway include another transferase (TIGR04282), a phosphoesterase, and a radical SAM enzyme (TIGR04167) whose C-terminal domain (pfam12345) frequently contains a selenocysteine [Unknown function, Enzymes of unknown specificity]. Length = 220

>gnl|CDD|133059 cd06437, CESA_CaSu_A2, Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 35/158 (22%)

Query: 203 TVLLPTYNEKENLPIIVYLI--TKYMDEGNYP---YEIIVIDDGSPDGTLDAAKQLQSIY 257
           TV LP +NEK    ++  LI     +D   YP    EI V+DD S D T+  A+++   Y
Sbjct: 4   TVQLPVFNEKY---VVERLIEAACALD---YPKDRLEIQVLDD-STDETVRLAREIVEEY 56

Query: 258 GSEKIVLKPRKK------KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ 311
            ++ + +K  ++      K G   A   G+K A G ++ I DAD    P F+ +      
Sbjct: 57  AAQGVNIKHVRRADRTGYKAG---ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA 113

Query: 312 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL 349
              L  V             W      ++   + LT++
Sbjct: 114 DPKLGFVQT----------RWGH----INANYSLLTRV 137

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants were significantly smaller, while the single mutant plants were almost normal. Length = 232

>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 16/96 (16%)

Query: 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEK 261
            ++++PT NE ENLP    L+         P EIIV+D GS DGT+  A+          
Sbjct: 1   LSIIIPTLNEAENLPR---LLASLRRLNPLPLEIIVVDGGSTDGTVAIARSA------GV 51

Query: 262 IVLKPRKKKLGLGTAY-M-HGLKYATGNFIIIMDAD 295
           +V+   K     G A  M  G   A G++++ + AD
Sbjct: 52  VVISSPK-----GRARQMNAGAAAARGDWLLFLHAD 82

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 221

>gnl|CDD|133049 cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 16/101 (15%)

Query: 202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYE----IIVIDDGSPDGTLDAAKQLQSIY 257
           YT+L+P Y E E LP ++      +   +YP       +++++   + T+ AA+ L+   
Sbjct: 3   YTILVPLYKEAEVLPQLI----ASLSALDYPRSKLDVKLLLEEDDEE-TIAAARALRLPS 57

Query: 258 GSEKIVL---KPRKKKLGLGTAYMHGLKYATGNFIIIMDAD 295
               +V+   +PR K      A  + L +A G +++I DA+
Sbjct: 58  IFRVVVVPPSQPRTKP----KACNYALAFARGEYVVIYDAE 94

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Length = 241

>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 32/197 (16%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---F 63
              I+V+D+GS DG+L+A K          + L    + LG    +  G+KYA      +
Sbjct: 32  DDVIVVVDNGSTDGSLEALK----ARFFPNVRLIENGENLGFAGGFNRGIKYALAKGDDY 87

Query: 64  IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGG---VYGWDFKRKLVSRGANY 120
           +++++ D    P  + E++K  +++    V G           +     +   ++ G   
Sbjct: 88  VLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRA 147

Query: 121 LTQLLLRP-------GVSDLTGSFRLYKKQVLENLVSSCVSKG--------YVFQMEMVI 165
              L + P        V+ L+G+  L +++  E +       G        Y   +++ +
Sbjct: 148 SPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKV-------GGFDERFFIYYEDVDLCL 200

Query: 166 RARQYNYTIGEVPISFV 182
           RAR+  Y I  VP + +
Sbjct: 201 RARKAGYKIYYVPDAII 217

Length = 305

>gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)

Query: 9  EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
          EIIV+D GS D T++ AK+    YG+ K+    ++   G G      L+ AT ++++ +D
Sbjct: 28 EIIVVDSGSTDRTVEIAKE----YGA-KVY---QRWWDGFGAQRNFALELATNDWVLSLD 79

Query: 69 AD 70
          AD
Sbjct: 80 AD 81

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. Length = 229

>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
            +E+IV+D+ S DG+++  ++L       ++ L    + LG G     G++ A G+++++
Sbjct: 26  DFEVIVVDNASTDGSVELLRELF-----PEVRLIRNGENLGFGAGNNQGIREAKGDYVLL 80

Query: 67  MDADLSHHPKFIPEMIKLQQQ 87
           ++ D    P  + E++   +Q
Sbjct: 81  LNPDTVVEPGALLELLDAAEQ 101

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 166

>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 291
            +E+IV+D+ S DG+++  ++L       ++ L    + LG G     G++ A G+++++
Sbjct: 26  DFEVIVVDNASTDGSVELLRELF-----PEVRLIRNGENLGFGAGNNQGIREAKGDYVLL 80

Query: 292 MDADLSHHPKFIPEMIKLQQQ 312
           ++ D    P  + E++   +Q
Sbjct: 81  LNPDTVVEPGALLELLDAAEQ 101

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 166

>gnl|CDD|133017 cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl transferase

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 9   EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---FII 65
           +++V+D+ S         +L+    SEKI L    + LG+  A   G+K A  N   +++
Sbjct: 26  KVVVVDNSS-----GNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVL 80

Query: 66  IMDADLSHHPKFIPEMIKLQQQE 88
           + D D    P  + +++  +   
Sbjct: 81  LFDQDSVPPPDMVEKLLAYKILS 103

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen. Length = 237

>gnl|CDD|133017 cd02526, GT2_RfbF_like, RfbF is a putative dTDP-rhamnosyl transferase

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---FII 290
           +++V+D+ S         +L+    SEKI L    + LG+  A   G+K A  N   +++
Sbjct: 26  KVVVVDNSS-----GNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALENGADYVL 80

Query: 291 IMDADLSHHPKFIPEMIKLQQQE 313
           + D D    P  + +++  +   
Sbjct: 81  LFDQDSVPPPDMVEKLLAYKILS 103

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen. Length = 237

>gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%)

Query: 5   NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
            YP YE+I I+DGS D T +   +L +     ++ +    +  G   A   G   A   +
Sbjct: 80  RYPNYEVIAINDGSSDNTGEILDRLAAQI--PRLRVIHLAENQGKANALNTGAAAARSEY 137

Query: 64  IIIMDADLSHHPKFIPEMIK-LQQQENLDVVTG 95
           ++ +D D    P     M++       +  VTG
Sbjct: 138 LVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTG 170

Length = 420

>gnl|CDD|133055 cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 17/190 (8%)

Query: 230 NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 288
            YP  E IVID GS DGT+D  K+ +        + +P K   G+  A   G+  ATG+ 
Sbjct: 24  TYPNIEYIVIDGGSTDGTVDIIKKYEDKI--TYWISEPDK---GIYDAMNKGIALATGDI 78

Query: 289 IIIMDA-DLSHHPKFIPEMIKLQQQENLDVVTG-TRYVGTGGVYGWDFKRKLVSRGANYL 346
           I  +++ D       +  +    +   +DVV G    V   G      +     R   +L
Sbjct: 79  IGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENG------RVIGRRRPPPFL 132

Query: 347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISF 406
            + LL         +F  +++ + E       S       ++++R          +P   
Sbjct: 133 DKFLLYGMPICHQATF--FRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVL 190

Query: 407 VD-RVYGESK 415
              R+ G S 
Sbjct: 191 AAFRLGGVSS 200

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 202

>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 22/102 (21%)

Query: 203 TVLLPTYN-EKENLPIIVYLITKYMDE--------GNYPYEIIVIDDGSPDGTLDAAKQL 253
            VL+ TYN EK            Y+ E             E+I+ DDGS DGT++  K+ 
Sbjct: 1   AVLMATYNGEK------------YLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEY 48

Query: 254 QSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD 295
                   I+L    K LG+   +   L+ A G+++   D D
Sbjct: 49  IDKD-PFIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQD 89

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 214

>gnl|CDD|234095 TIGR03030, CelA, cellulose synthase catalytic subunit (UDP-forming)

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 24/114 (21%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYE---IIVIDDGSPDGTLDAAKQLQSIYGSE 260
           V +PTYNE   +     L  K MD   YP +   + ++DDG  D   +     Q+     
Sbjct: 135 VFIPTYNEDLEIVATTVLAAKNMD---YPADKFRVWILDDGGTDQKRNDPDPEQAEAAQR 191

Query: 261 KIVLKPRKKKLGLGTAYM--------------HGLKYATGNFIIIMDADLSHHP 300
           +  LK   +KLG+   Y+              + LK+  G  I+I DAD  H P
Sbjct: 192 REELKEFCRKLGVN--YITRPRNVHAKAGNINNALKHTDGELILIFDAD--HVP 241

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils. Length = 713

>gnl|CDD|133043 cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

 Score = 41.4 bits (98), Expect = 4e-04
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 13/80 (16%)

Query: 5  NYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV-LKPRKKKLGLGTAYMHGLKYAT 60
          +YP     + V+DDG        A +L   YG   +     R  K G      + L + T
Sbjct: 28 DYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAG---NLNNALAHTT 84

Query: 61 GNFIIIMDADLSHHPKFIPE 80
          G+F+ I+DAD       +P 
Sbjct: 85 GDFVAILDAD------HVPT 98

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. Length = 234

>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of hyaluronan

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           TV++P Y+E  ++     L +        P EIIV+ DG           L        I
Sbjct: 3   TVIIPVYDEDPDVFREC-LRSIL---RQKPLEIIVVTDGD---DEPYLSILSQTVKYGGI 55

Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK 308
            +       G   A   G+++ T + ++++D+D    P  +PEM+K
Sbjct: 56  FVITVPHP-GKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLK 100

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. Length = 235

>gnl|CDD|133055 cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 8/106 (7%)

Query: 5   NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
            YP  E IVID GS DGT+D  K+ +        + +P K   G+  A   G+  ATG+ 
Sbjct: 24  TYPNIEYIVIDGGSTDGTVDIIKKYEDKI--TYWISEPDK---GIYDAMNKGIALATGDI 78

Query: 64  IIIMDA-DLSHHPKFIPEMIKLQQQENLDVVTG-TRYVGTGGVYGW 107
           I  +++ D       +  +    +   +DVV G    V   G    
Sbjct: 79  IGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIG 124

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 202

>gnl|CDD|237556 PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 9   EIIVIDDGSPDGTLDAAKQL-QSIYGSEKIV--LKPRKKKLGLGTAYMHGLKYATGNFII 65
           E+IVID GS D T + A      +   E+I+  L PR  K   G A    L   TG+ ++
Sbjct: 64  ELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGK---GEALWRSLAATTGDIVV 120

Query: 66  IMDADL-SHHPKFIP 79
            +DADL +  P F+P
Sbjct: 121 FVDADLINFDPMFVP 135

Length = 306

>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 6/82 (7%)

Query: 6   YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP-RKKKLG--LGTAYMHGLKYATGN 62
            P+E+I+ DDGS + T +  ++ +S      I +K   ++  G          +  A G+
Sbjct: 25  LPFEVIIADDGSTEETKELIEEFKS---QFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGD 81

Query: 63  FIIIMDADLSHHPKFIPEMIKL 84
           ++I +D D   HP FI + I+L
Sbjct: 82  YLIFIDGDCIPHPDFIADHIEL 103

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm to undergo cytokinesis and cell division. Chondroitin is synthesized as proteoglycans, sulfated and secreted to the cell surface or extracellular matrix. Length = 182

>gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 9  EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
          E+I+ DDGS DGT++  K+         I+L    K LG+   +   L+ A G+++   D
Sbjct: 29 ELIISDDGSTDGTVEIIKEYIDKD-PFIIILIRNGKNLGVARNFESLLQAADGDYVFFCD 87

Query: 69 AD 70
           D
Sbjct: 88 QD 89

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 214

>gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine synthase

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 5   NYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF 63
            YP +EII I+DGS D T +   +L +     ++ +    +  G   A   GL  A   +
Sbjct: 71  RYPNFEIIAINDGSKDNTAEILDRLAAQD--PRLRVIHLAENQGKANALNTGLLAAKYEY 128

Query: 64  IIIMDADLSHHPKFIPEMIK-LQQQENLDVVTG 95
           ++ +D D    P     M++       +  VTG
Sbjct: 129 LVCIDGDALLDPDAAYWMVEHFLSNPRVGAVTG 161

Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages. Length = 407

>gnl|CDD|200433 TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 19/181 (10%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
            +I+VID  S DGT + AK+  +     ++V++  K K   G A     +     +++++
Sbjct: 28  SDILVIDGNSTDGTQEIAKEAGA-----RVVIQSGKGK---GQAVREAFELIDAPYVLML 79

Query: 68  DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 127
           D D ++ P     +++       D V G R+          F R  ++   N L   L R
Sbjct: 80  DGDGTYLPADADALLEPLLSGRADHVIGNRFADMEPG---AFTR--LNLVGNRLINRLFR 134

Query: 128 --PGV--SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD 183
              GV   D+   +R + ++ +  +  +    G+  + E+ +   + N  +  VPI++  
Sbjct: 135 IIHGVDLRDILSGYRAFTRESIRRMELT--ETGFEIETEIAVECVKKNLRVEVVPITYRA 192

Query: 184 R 184
           R
Sbjct: 193 R 193

Members of this family are glycosyltransferases restricted to the archaea. All but two members are from species with the PGF-CTERM/archaeosortase A system, a proposed maturation system for exported, glycosylated proteins as are found often in S-layers. Length = 293

>gnl|CDD|133028 cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TG-NF 63
           P  IIVID+ S DGT +    L S+   + IV     + LG    +  G++ A   G ++
Sbjct: 26  PDHIIVIDNASTDGTAEW---LTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDW 82

Query: 64  IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR 116
           I +MD D    P  + +++    ++N   +        G   G    R++V +
Sbjct: 83  IWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDGSFVGVLISRRVVEK 135

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 202

>gnl|CDD|133028 cd04185, GT_2_like_b, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TG-NF 288
           P  IIVID+ S DGT +    L S+   + IV     + LG    +  G++ A   G ++
Sbjct: 26  PDHIIVIDNASTDGTAEW---LTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAYELGYDW 82

Query: 289 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR 341
           I +MD D    P  + +++    ++N   +        G   G    R++V +
Sbjct: 83  IWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDGSFVGVLISRRVVEK 135

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 202

>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 9   EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
           E+IV+DDGS D     A +   +    +++  PR  + G   A   G + A   F+   D
Sbjct: 107 EVIVVDDGSEDPVPTRAARGARL--PVRVIRHPR--RQGPAAARNAGARAARTEFVAFTD 162

Query: 69  ADLSHHPKFIPEMI 82
           +D+   P ++  ++
Sbjct: 163 SDVVPRPGWLRALL 176

Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin. Length = 467

>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 293
           E+IV+DDGS D     A +   +    +++  PR  + G   A   G + A   F+   D
Sbjct: 107 EVIVVDDGSEDPVPTRAARGARL--PVRVIRHPR--RQGPAAARNAGARAARTEFVAFTD 162

Query: 294 ADLSHHPKFIPEMI 307
           +D+   P ++  ++
Sbjct: 163 SDVVPRPGWLRALL 176

Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin. Length = 467

>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 9  EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 68
          EII++DD S    L    +        K+ +   KK+ GL  A + G + ATG+ ++ +D
Sbjct: 32 EIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLD 91

Query: 69 A 69
          +
Sbjct: 92 S 92

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 18/61 (29%), Positives = 31/61 (50%)

Query: 234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMD 293
           EII++DD S    L    +        K+ +   KK+ GL  A + G + ATG+ ++ +D
Sbjct: 32  EIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLD 91

Query: 294 A 294
           +
Sbjct: 92  S 92

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
KOG2978|consensus	238		100.0
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	100.0
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	100.0
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	100.0
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	99.98
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	99.97
KOG2978|consensus	238		99.97
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	99.97
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.96
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	99.95
PRK11204	420	N-glycosyltransferase; Provisional	99.95
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.95
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	99.95
PRK14583	444	hmsR N-glycosyltransferase; Provisional	99.95
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	99.95
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	99.95
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.94
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.94
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.94
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	99.94
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	99.94
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	99.93
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.93
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	99.93
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	99.93
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.93
PRK10063	248	putative glycosyl transferase; Provisional	99.93
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	99.93
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	99.93
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	99.93
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.93
PRK10073	328	putative glycosyl transferase; Provisional	99.92
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	99.92
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	99.92
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	99.92
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.92
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	99.92
KOG2977|consensus	323		99.91
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	99.91
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	99.91
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.91
COG1216	305	Predicted glycosyltransferases [General function p	99.91
PRK10018	279	putative glycosyl transferase; Provisional	99.91
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	99.9
PRK14716	504	bacteriophage N4 adsorption protein B; Provisional	99.9
COG1215	439	Glycosyltransferases, probably involved in cell wa	99.9
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	99.9
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	99.9
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	99.89
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.89
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	99.88
cd04190	244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.87
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	99.87
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	99.86
cd06438	183	EpsO_like EpsO protein participates in the methano	99.86
PRK11234	727	nfrB bacteriophage N4 adsorption protein B; Provis	99.85
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	99.85
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	99.85
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	99.84
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	99.84
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	99.84
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.83
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	99.82
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	99.82
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.82
PRK10073	328	putative glycosyl transferase; Provisional	99.8
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	99.8
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.8
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	99.79
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.79
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	99.79
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.79
PRK05454	691	glucosyltransferase MdoH; Provisional	99.79
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	99.79
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	99.78
PRK15489	703	nfrB bacteriophage N4 adsorption protein B; Provis	99.78
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.78
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.77
PRK11204	420	N-glycosyltransferase; Provisional	99.77
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	99.76
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	99.76
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.76
PRK10063	248	putative glycosyl transferase; Provisional	99.76
PRK14583	444	hmsR N-glycosyltransferase; Provisional	99.76
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	99.76
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	99.75
PRK10018	279	putative glycosyl transferase; Provisional	99.75
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.74
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	99.74
KOG2977|consensus	323		99.74
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.74
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	99.73
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	99.72
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.71
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	99.7
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	99.67
cd06438	183	EpsO_like EpsO protein participates in the methano	99.67
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	99.67
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	99.65
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	99.65
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	99.65
PRK14716	504	bacteriophage N4 adsorption protein B; Provisional	99.64
COG1216	305	Predicted glycosyltransferases [General function p	99.64
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	99.62
COG1215	439	Glycosyltransferases, probably involved in cell wa	99.62
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	99.6
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.6
COG0463	291	WcaA Glycosyltransferases involved in cell wall bi	99.57
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.53
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	99.51
PRK11234	727	nfrB bacteriophage N4 adsorption protein B; Provis	99.45
cd04190	244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.44
KOG3737|consensus	603		99.41
KOG3738|consensus	559		99.38
KOG3736|consensus	578		99.37
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	99.35
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	99.31
PRK15489	703	nfrB bacteriophage N4 adsorption protein B; Provis	99.28
PRK05454	691	glucosyltransferase MdoH; Provisional	99.19
PF13632	193	Glyco_trans_2_3: Glycosyl transferase family group	99.17
KOG2547|consensus	431		99.15
PF13712	217	Glyco_tranf_2_5: Glycosyltransferase like family;	99.12
COG0463	291	WcaA Glycosyltransferases involved in cell wall bi	99.09
KOG3738|consensus	559		99.08
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	99.07
KOG3736|consensus	578		98.99
KOG3737|consensus	603		98.92
cd02514	334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	98.91
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	98.67
PF03142	527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	98.64
PF13632	193	Glyco_trans_2_3: Glycosyl transferase family group	98.5
PLN02893	734	Cellulose synthase-like protein	98.43
COG4092	346	Predicted glycosyltransferase involved in capsule	98.4
PF13712	217	Glyco_tranf_2_5: Glycosyltransferase like family;	98.21
KOG2571|consensus	862		97.96
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	97.96
KOG2547|consensus	431		97.95
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	97.88
cd02514	334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	97.84
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	97.81
COG2943	736	MdoH Membrane glycosyltransferase [Cell envelope b	97.79
PF03071	434	GNT-I: GNT-I family; InterPro: IPR004139 The biosy	97.75
PRK14503	393	mannosyl-3-phosphoglycerate synthase; Provisional	97.73
TIGR02460	381	osmo_MPGsynth mannosyl-3-phosphoglycerate synthase	97.72
PF03452	269	Anp1: Anp1; InterPro: IPR005109 The members of thi	97.55
KOG3916|consensus	372		97.53
PF09488	381	Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthas	97.34
PF11735	241	CAP59_mtransfer: Cryptococcal mannosyltransferase	97.32
PF06306	347	CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (	97.04
KOG3588|consensus	494		96.93
COG4092	346	Predicted glycosyltransferase involved in capsule	96.91
PLN02893	734	Cellulose synthase-like protein	96.83
PF02709	78	Glyco_transf_7C: N-terminal domain of galactosyltr	96.82
PLN02189	1040	cellulose synthase	96.76
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	96.6
PF01762	195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	96.54
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	96.53
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	96.3
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	96.13
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	96.06
PF11316	234	Rhamno_transf: Putative rhamnosyl transferase ; In	96.03
PLN02917	293	CMP-KDO synthetase	96.02
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	95.99
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	95.98
PLN02458	346	transferase, transferring glycosyl groups	95.94
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	95.82
cd00218	223	GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I)	95.73
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	95.69
KOG1413|consensus	411		95.64
PLN02195	977	cellulose synthase A	95.58
PF11397	343	GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IP	95.49
PF03452	269	Anp1: Anp1; InterPro: IPR005109 The members of thi	95.47
PLN02248	1135	cellulose synthase-like protein	95.34
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	95.34
KOG2571|consensus	862		95.28
PF03214	348	RGP: Reversibly glycosylated polypeptide; InterPro	95.27
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	95.22
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	94.83
PF11735	241	CAP59_mtransfer: Cryptococcal mannosyltransferase	94.8
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	94.74
PF13733	136	Glyco_transf_7N: N-terminal region of glycosyl tra	94.73
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	94.39
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	94.28
TIGR02460	381	osmo_MPGsynth mannosyl-3-phosphoglycerate synthase	94.13
PF09258	247	Glyco_transf_64: Glycosyl transferase family 64 do	94.1
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	94.01
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	93.95
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	93.91
PRK14503	393	mannosyl-3-phosphoglycerate synthase; Provisional	93.88
PF11316	234	Rhamno_transf: Putative rhamnosyl transferase ; In	93.86
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	93.83
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	93.82
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	93.81
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	93.8
PLN02190	756	cellulose synthase-like protein	93.76
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	93.7
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	93.62
KOG1476|consensus	330		93.52
KOG2287|consensus	349		93.5
PF03142	527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	93.47
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	93.38
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	93.27
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	93.16
PF06306	347	CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (	93.07
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	93.05
PLN02189	1040	cellulose synthase	92.99
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	92.79
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	92.73
KOG3917|consensus	310		92.56
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	92.55
PRK05293	380	glgC glucose-1-phosphate adenylyltransferase; Prov	92.49
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	92.29
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	92.19
PF05060	356	MGAT2: N-acetylglucosaminyltransferase II (MGAT2);	92.18
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	92.07
PF05045	498	RgpF: Rhamnan synthesis protein F; InterPro: IPR00	92.06
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	91.98
PLN02458	346	transferase, transferring glycosyl groups	91.82
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	91.8
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	91.68
PF04666	297	Glyco_transf_54: N-Acetylglucosaminyltransferase-I	91.68
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	91.45
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	91.44
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	91.31
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	91.14
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	90.97
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	90.89
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	90.77
PF01697	285	Glyco_transf_92: Glycosyltransferase family 92; In	90.69
PF09488	381	Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthas	90.61
PF02434	252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	90.61
PLN02195	977	cellulose synthase A	90.42
PF02709	78	Glyco_transf_7C: N-terminal domain of galactosyltr	90.33
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	90.32
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	90.29
PLN02915	1044	cellulose synthase A [UDP-forming], catalytic subu	90.27
PLN03180	346	reversibly glycosylated polypeptide; Provisional	90.18
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	89.79
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	89.77
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	89.46
cd00218	223	GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I)	89.35
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	89.22
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	89.2
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	89.15
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	89.13
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	89.03
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	88.76
KOG3588|consensus	494		88.7
PLN03153	537	hypothetical protein; Provisional	88.7
PLN02400	1085	cellulose synthase	88.54
PF01762	195	Galactosyl_T: Galactosyltransferase; InterPro: IPR	88.44
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	88.41
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	88.35
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	88.33
PF11397	343	GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IP	88.19
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	88.17
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	88.13
PRK10122	297	GalU regulator GalF; Provisional	88.1
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	87.97
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	87.89
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	87.62
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	87.4
PF01644	163	Chitin_synth_1: Chitin synthase; InterPro: IPR0048	87.13
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	87.02
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	87.0
PF02434	252	Fringe: Fringe-like; InterPro: IPR003378 The Notch	86.95
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	86.46
PLN02241	436	glucose-1-phosphate adenylyltransferase	86.38
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	86.36
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	86.32
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	86.2
COG2068	199	Uncharacterized MobA-related protein [General func	86.16
PLN02248	1135	cellulose synthase-like protein	85.93
PF03360	207	Glyco_transf_43: Glycosyltransferase family 43; In	85.79
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	85.69
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	85.54
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	85.31
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	85.28
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	85.28
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	84.89
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	84.69
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	84.59
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	84.45
PF01697	285	Glyco_transf_92: Glycosyltransferase family 92; In	84.32
PF09837	122	DUF2064: Uncharacterized protein conserved in bact	84.21
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	84.03
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	83.9
PLN02436	1094	cellulose synthase A	83.66
PRK14359	430	glmU bifunctional N-acetylglucosamine-1-phosphate	83.33
cd06431	280	GT8_LARGE_C LARGE catalytic domain has closest hom	83.27
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	83.27
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	83.09
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	83.06
PF03552	720	Cellulose_synt: Cellulose synthase; InterPro: IPR0	83.06
PLN03153	537	hypothetical protein; Provisional	82.98
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	82.53
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	82.52
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	81.96
PF03071	434	GNT-I: GNT-I family; InterPro: IPR004139 The biosy	81.95
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	81.7
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	81.18
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	81.12
KOG1476|consensus	330		80.8
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	80.33
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	80.08

>KOG2978|consensus

Probab=100.00  E-value=5.2e-41  Score=263.41  Aligned_cols=237  Identities=72%  Similarity=1.190  Sum_probs=226.9

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      .+++||++|+|||.++++-++.-+...+.+...++|||+|||+|+|.|.+.++.+++.+..-++.+.+.....|.+.|..
T Consensus         2 ~~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~   81 (238)
T KOG2978|consen    2 SIKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYI   81 (238)
T ss_pred             CcceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHH
Confidence            57899999999999999988888888888878899999999999999999999999988888999999999999999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL  358 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (435)
                      .|+++|+|+|+++||+|..++|..+.++++..+++..|+|.|.|+..+++..+|+..|+.+++..+.+.+..++....+.
T Consensus        82 hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~la~~ll~~~~sdl  161 (238)
T KOG2978|consen   82 HGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAGGGGVYGWDMKRKIISRGANFLARILLNPGVSDL  161 (238)
T ss_pred             hhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcCCCceecchhhHHHHhhhhHHHHHHhccCCCccC
Confidence            99999999999999999999999999999999888899999999999999999999999999999999999999999999


Q ss_pred             ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHHHhhcC
Q psy3650         359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT  435 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~  435 (435)
                      +|+|+++++++++..-....+.+|-+.+||..|+.+.||.|.+||++++.|..|.|+.+...+..+++.++.+|++|
T Consensus       162 tGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~~GeSKLg~~eIv~ylk~l~~Lf~~~  238 (238)
T KOG2978|consen  162 TGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFVDRTYGESKLGGKEIVQYLKGLLYLFAFT  238 (238)
T ss_pred             cceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEEeeccccccccHHHHHHHHHHHhhheeeC
Confidence            99999999999999876778899999999999999999999999999999999999999999999999999999876

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=100.00  E-value=4.8e-37  Score=273.64  Aligned_cols=238  Identities=65%  Similarity=1.076  Sum_probs=212.4

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTA  276 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a  276 (435)
                      ...|++|||||+||+++.++.+++++.+.+. ...++|||||||||+|+|.++++++...++...+.++..++|.|++.|
T Consensus         6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~-~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a   84 (243)
T PLN02726          6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQ-DVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTA   84 (243)
T ss_pred             CCCceEEEEEccCCchhhHHHHHHHHHHHhc-cCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHH
Confidence            3468899999999999999999988876543 344899999999999999999999988877667777778889999999


Q ss_pred             HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650         277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVS  356 (435)
Q Consensus       277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
                      +|.|++.|+|||++++|+|..++|++|+++++.+.+++.++|.|.+....++..++++.+.+.++..+.+.....+.++.
T Consensus        85 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~  164 (243)
T PLN02726         85 YIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVS  164 (243)
T ss_pred             HHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999998788999999987766554555667788888888888888888899


Q ss_pred             ccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHHHhhcC
Q psy3650         357 DLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFATT  435 (435)
Q Consensus       357 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~  435 (435)
                      +.+|+|++|+|+++++++...+..+|.+|+||++++.++|+++.++|+.+.+|..|.|+++..++++++..++.+..||
T Consensus       165 d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~s~~~~~~~~~~~~~~~~~~~~~  243 (243)
T PLN02726        165 DLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGESKLGGSEIVQYLKGLLYLLLTT  243 (243)
T ss_pred             cCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCCcccCCHHHHHHHHHHHHHHeecC
Confidence            9999999999999999976666778889999999999999999999999999999999999999999999999998887

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=100.00  E-value=4e-32  Score=250.32  Aligned_cols=235  Identities=24%  Similarity=0.418  Sum_probs=199.2

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhc-----CCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCC
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDE-----GNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKK  269 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~-----~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~  269 (435)
                      ...+.+|||||+|||++.++++++++.+++.+     ...++|||||||||+|+|.++++++.+.+  ++.++.++..++
T Consensus        67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~  146 (333)
T PTZ00260         67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR  146 (333)
T ss_pred             CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence            45789999999999999999999988776541     23479999999999999999999988764  444677888889


Q ss_pred             CCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc---CCCceEEeeeEECCC--ceeccchhHHHHHHHHH
Q psy3650         270 KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ---ENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGAN  344 (435)
Q Consensus       270 n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~---~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~  344 (435)
                      |.|++.|+|.|++.|+||+|+++|+|..++++.+.++++.+.+   ++.|+|+|.+....+  .....++++++.++..+
T Consensus       147 N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~  226 (333)
T PTZ00260        147 NKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFH  226 (333)
T ss_pred             CCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998863   678999999876432  23445788999999999


Q ss_pred             HHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHH
Q psy3650         345 YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQ  423 (435)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~  423 (435)
                      .+.+...+..+.|++||+++|+|++++.+.......+|.+|.|++.++.+.|+++.++|+.+..+.  .|+.+ .+..++
T Consensus       227 ~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~~~~~--~Sk~~~~~~~~~  304 (333)
T PTZ00260        227 FIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNWTEVE--GSKLNVISASIQ  304 (333)
T ss_pred             HHHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceeeEECC--CCeechHHHHHH
Confidence            999999999999999999999999999985444557888999999999999999999999987643  47777 566677


Q ss_pred             HHHHHHHHhh
Q psy3650         424 FAKALLYLFA  433 (435)
Q Consensus       424 ~~~~~~~~f~  433 (435)
                      +++.++++++
T Consensus       305 ~~~~l~~~~~  314 (333)
T PTZ00260        305 MARDILLVRS  314 (333)
T ss_pred             HHHHHHHHHH
Confidence            7777766543

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=100.00  E-value=1.9e-31  Score=235.23  Aligned_cols=223  Identities=52%  Similarity=0.889  Sum_probs=191.6

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      ||||+||++..+.++++++.++..  ..++|||||||||+|+|.++++++.+.++.  +.++..+.|.|++.|+|.|++.
T Consensus         1 ViIp~yn~~~~l~~~l~sl~~q~~--~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~--i~~~~~~~n~G~~~a~n~g~~~   76 (224)
T cd06442           1 IIIPTYNERENIPELIERLDAALK--GIDYEIIVVDDNSPDGTAEIVRELAKEYPR--VRLIVRPGKRGLGSAYIEGFKA   76 (224)
T ss_pred             CeEeccchhhhHHHHHHHHHHhhc--CCCeEEEEEeCCCCCChHHHHHHHHHhCCc--eEEEecCCCCChHHHHHHHHHH
Confidence            689999999999999999977432  367999999999999999999999887764  4555577899999999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR  363 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
                      |++||++++|+|+.++|+++..+++.+..++.++|+|.+.........+++.+...........+.....+..+++|+|+
T Consensus        77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (224)
T cd06442          77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFR  156 (224)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccc
Confidence            99999999999999999999999999777788999998877665555566666666666566655556777888999999


Q ss_pred             eecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHH
Q psy3650         364 LYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLY  430 (435)
Q Consensus       364 ~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~  430 (435)
                      +++|+++++++......+|.+|+|+++|+.+.|+++.++|..++.|..|.|+.+++..+++++..++
T Consensus       157 ~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s~~~~~~~~~~~~~~~~  223 (224)
T cd06442         157 AYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKLGGKEIVEYLKGLLR  223 (224)
T ss_pred             hhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcCceeHHHHHHHHHHHhh
Confidence            9999999999733445677789999999999999999999999999999999999999999888765

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=99.98  E-value=2.1e-30  Score=238.33  Aligned_cols=224  Identities=26%  Similarity=0.407  Sum_probs=189.4

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      .+++|||||+|||++.++++++++.+.+.+...++|||+|||||+|+|.++++++.+.. ..+++.+....|.|++.|++
T Consensus         5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~-~~~v~~i~~~~n~G~~~A~~   83 (325)
T PRK10714          5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAP-DSHIVAILLNRNYGQHSAIM   83 (325)
T ss_pred             CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhc-CCcEEEEEeCCCCCHHHHHH
Confidence            56799999999999999999999988777766789999999999999999999876543 23555555677999999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL  358 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (435)
                      .|++.|+||+++++|+|.+++|+++.++++.+++ +.|+|.|.+..+.     .++.+++.++..+.+.+...+.++.|.
T Consensus        84 ~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~-~~DvV~~~r~~~~-----~~~~r~~~s~~~~~l~~~~~g~~~~d~  157 (325)
T PRK10714         84 AGFSHVTGDLIITLDADLQNPPEEIPRLVAKADE-GYDVVGTVRQNRQ-----DSWFRKTASKMINRLIQRTTGKAMGDY  157 (325)
T ss_pred             HHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHh-hCCEEEEEEcCCC-----CcHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            9999999999999999999999999999999964 6888888764322     267888899999999999999999999


Q ss_pred             ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHHHhhc
Q psy3650         359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFAT  434 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~  434 (435)
                      +|++++++|++++.+....+...|     +...+...|+++.++|+.+..|..|.|++++++.++++.+.+..|++
T Consensus       158 ~~gfr~~~r~~~~~l~~~~~~~~~-----~~~l~~~~g~~i~evpv~~~~R~~G~Sk~~~~~~~~~~~~~~~~~s~  228 (325)
T PRK10714        158 GCMLRAYRRHIVDAMLHCHERSTF-----IPILANTFARRAIEIPVHHAEREFGDSKYSFMRLINLMYDLVTCLTT  228 (325)
T ss_pred             CcCeEEEcHHHHHHHHHCCCCccH-----HHHHHHHcCCCEEEEEeEecCccCCcCCCCHHHHHHHHHHHHHHhch
Confidence            999999999999998533332222     33557788999999999999999999999999999988887765543

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=99.97  E-value=2.1e-30  Score=226.21  Aligned_cols=206  Identities=31%  Similarity=0.531  Sum_probs=180.6

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhc-CCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDE-GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      ||||+||++..+.++++++.++..+ ...++|||+|||||+|+|.++++++..+++.. ++++..++|.|++.|+|.|++
T Consensus         1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~-i~~i~~~~n~G~~~a~~~g~~   79 (211)
T cd04188           1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPAL-IRVLTLPKNRGKGGAVRAGML   79 (211)
T ss_pred             CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCc-EEEEEcccCCCcHHHHHHHHH
Confidence            6899999999999999999876543 45689999999999999999999998887753 567777889999999999999


Q ss_pred             hccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCce-eccchhHHHHHHHHHHHHHHhcCCCccccccc
Q psy3650         283 YATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGV-YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGS  361 (435)
Q Consensus       283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
                      .|.+|||+++|+|..++|+++.++++.+.+++.++|.|.+....... ...++.+.+.++....+.....+..+.+.+++
T Consensus        80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g  159 (211)
T cd04188          80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCG  159 (211)
T ss_pred             HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccC
Confidence            99999999999999999999999999977778999999988765432 33567778888878888888888888999999


Q ss_pred             eeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecc
Q psy3650         362 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRV  410 (435)
Q Consensus       362 ~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~  410 (435)
                      +++|+|+++++++......+|.+|+||+.|+.+.|+++.++|+.+.+|.
T Consensus       160 ~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi~~~~~~  208 (211)
T cd04188         160 FKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIP  208 (211)
T ss_pred             ceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCcceecCC
Confidence            9999999999997655667888999999999999999999999999887

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>KOG2978|consensus

Probab=99.97  E-value=1.1e-29  Score=199.90  Aligned_cols=185  Identities=71%  Similarity=1.178  Sum_probs=175.0

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      +...++|||||||+|.|+|.++++++++.+...+|.+.+....+|.|.|.-.|+++|+|+|++.||+|..++|.++.+++
T Consensus        31 e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i  110 (238)
T KOG2978|consen   31 EEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFI  110 (238)
T ss_pred             hhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhccCCeEEEEeCccCCCchhHHHHH
Confidence            45678999999999999999999999988877788888888889999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650          83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME  162 (435)
Q Consensus        83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  162 (435)
                      +...++++|+|.|.|+....+..+|+..|+.+++..+.+.+.+.+.+..+..|.|+++++++++.+-......+|.+-+|
T Consensus       111 ~lq~~~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~la~~ll~~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmE  190 (238)
T KOG2978|consen  111 RLQKEGNYDIVLGTRYAGGGGVYGWDMKRKIISRGANFLARILLNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQME  190 (238)
T ss_pred             HHhhccCcceeeeeeEcCCCceecchhhHHHHhhhhHHHHHHhccCCCccCcceeeeehHHHHHhhHHHhhccchhhhHH
Confidence            99988899999999999999999999999999999999999999999999999999999999999877788999999999


Q ss_pred             HHHHHHhhcceeEeeeeEeeecccc
Q psy3650         163 MVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       163 l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      +..|+++.|+.+.++|+.+..|.++
T Consensus       191 ll~ra~~~~y~IgEvPitFvdR~~G  215 (238)
T KOG2978|consen  191 LLARARQHGYTIGEVPITFVDRTYG  215 (238)
T ss_pred             HHHhccccCceEeecceEEEeeccc
Confidence            9999999999999999999988864

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=99.97  E-value=1.1e-29  Score=218.65  Aligned_cols=190  Identities=15%  Similarity=0.162  Sum_probs=158.8

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HHHH
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTA  276 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~~a  276 (435)
                      |++|||||+||++..+.++|+++.+   |.++++|||||||+|+|+|.++++++...++..++.++..+.+.|   ++.+
T Consensus         1 p~vsviip~~n~~~~l~~~L~sl~~---q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   77 (196)
T cd02520           1 PGVSILKPLCGVDPNLYENLESFFQ---QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNN   77 (196)
T ss_pred             CCeEEEEecCCCCccHHHHHHHHHh---ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHH
Confidence            5799999999999999999998865   667789999999999999999999998888866665555555544   4568


Q ss_pred             HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650         277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVS  356 (435)
Q Consensus       277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
                      +|.|++.+++||++++|+|+.++|++|+.++..+.+++.++|.|.                                   
T Consensus        78 ~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~-----------------------------------  122 (196)
T cd02520          78 LIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL-----------------------------------  122 (196)
T ss_pred             HHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee-----------------------------------
Confidence            899999999999999999999999999999999877788888875                                   


Q ss_pred             ccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHH
Q psy3650         357 DLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKA  427 (435)
Q Consensus       357 ~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~  427 (435)
                      ...|++++++|+++++++++... ..+.+|++++.|+.++|+++.++|...+++..+.+... +++..||.++
T Consensus       123 ~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~  195 (196)
T cd02520         123 CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWSRT  195 (196)
T ss_pred             cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcccHHHHHHHHHHHhcc
Confidence            35577899999999999876432 33468999999999999999999998888876665544 4556666553

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=99.96  E-value=4.4e-28  Score=215.83  Aligned_cols=226  Identities=17%  Similarity=0.231  Sum_probs=163.3

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      |.+|||||+||+++.+.++++++.+   |.++  .+|||||||+|+|+|.++++++... +..+++++.+..|.|++.|+
T Consensus         1 p~vsIiIp~~Ne~~~l~~~l~sl~~---~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~~a~   76 (241)
T cd06427           1 PVYTILVPLYKEAEVLPQLIASLSA---LDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKPKAC   76 (241)
T ss_pred             CeEEEEEecCCcHHHHHHHHHHHHh---CcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchHHHH
Confidence            6799999999999999999999865   4443  4899999999999999999887432 23467777777788999999


Q ss_pred             HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcC--CCceEEeeeEECCCceeccchhHHHHH----HHHHHHHHHhc
Q psy3650         278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE--NLDVVTGTRYVGTGGVYGWDFKRKLVS----RGANYLTQLLL  351 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  351 (435)
                      |.|++.++||||+++|+|+.++|+++.+++..+.+.  +..++.+.....+..   ..+......    ...........
T Consensus        77 n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  153 (241)
T cd06427          77 NYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR---ENWLTRMFALEYAAWFDYLLPGLA  153 (241)
T ss_pred             HHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCC---ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998743  333444443332211   011111111    11111111111


Q ss_pred             CCCcc-ccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCCHHHHHHHHHHHHH
Q psy3650         352 RPGVS-DLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLY  430 (435)
Q Consensus       352 ~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~  430 (435)
                      ..... .+.|++++|+|+++++++++.+ ..+.||+|+++|+..+|+++.++|.....+...+-+--+++..||.++.++
T Consensus       154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~eD~~l~~rl~~~G~r~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g~~~  232 (241)
T cd06427         154 RLGLPIPLGGTSNHFRTDVLRELGGWDP-FNVTEDADLGLRLARAGYRTGVLNSTTLEEANNALGNWIRQRSRWIKGYMQ  232 (241)
T ss_pred             hcCCeeecCCchHHhhHHHHHHcCCCCc-ccchhhHHHHHHHHHCCceEEEecccccccCcHhHHHHHHHHHHHhccHHH
Confidence            11222 3456778999999999987654 457799999999999999999999765443322223346888999998888


Q ss_pred             Hhh
Q psy3650         431 LFA  433 (435)
Q Consensus       431 ~f~  433 (435)
                      ++.
T Consensus       233 ~~~  235 (241)
T cd06427         233 TWL  235 (241)
T ss_pred             HHH
Confidence            763

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=99.95  E-value=5.3e-27  Score=215.55  Aligned_cols=207  Identities=18%  Similarity=0.161  Sum_probs=149.1

Q ss_pred             EEEEeccCCC-CChHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650         203 TVLLPTYNEK-ENLPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH  279 (435)
Q Consensus       203 sivip~~n~~-~~l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~  279 (435)
                      |||||+||+. +.+.++|+++.+   +.++  .+|||||||||+|+|.+.+.+.........++++..++|.|.+.|+|.
T Consensus         1 SIIIp~~N~~~~~l~~~l~Sl~~---~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~   77 (299)
T cd02510           1 SVIIIFHNEALSTLLRTVHSVIN---RTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIA   77 (299)
T ss_pred             CEEEEEecCcHHHHHHHHHHHHh---cCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHH
Confidence            7999999999 999999988865   3332  369999999999999998866322211225667777889999999999


Q ss_pred             HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCcee-------------ccchhHHHHHHHHHH-
Q psy3650         280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY-------------GWDFKRKLVSRGANY-  345 (435)
Q Consensus       280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~-  345 (435)
                      |++.|+||||+|+|+|+.++|+||+.|++.+.+++..++++.....+....             .+.....+....... 
T Consensus        78 g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (299)
T cd02510          78 GARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEER  157 (299)
T ss_pred             HHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHh
Confidence            999999999999999999999999999999987776666554322211100             000000000000000 


Q ss_pred             -HHHHhcCCCccccccceeeecHHHHHHhhhcccCcc-c-chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         346 -LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       346 -~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                       .............+|+|++++|++|+++|++.+... + .||+|+|+|+.++|+++.++|.+.+.|..+
T Consensus       158 ~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~  227 (299)
T cd02510         158 RRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR  227 (299)
T ss_pred             hhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence             000001123445678999999999999988766543 2 489999999999999999999988777666

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>PRK11204 N-glycosyltransferase; Provisional

Probab=99.95  E-value=7.5e-27  Score=225.04  Aligned_cols=225  Identities=17%  Similarity=0.218  Sum_probs=171.3

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHH
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTA  276 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a  276 (435)
                      ...|++||+||+|||++.++++++++.+   |.++++||+||||||+|+|.+.++++.+++++  +.++..++|.|++.|
T Consensus        51 ~~~p~vsViIp~yne~~~i~~~l~sl~~---q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~--v~~i~~~~n~Gka~a  125 (420)
T PRK11204         51 KEYPGVSILVPCYNEGENVEETISHLLA---LRYPNYEVIAINDGSSDNTGEILDRLAAQIPR--LRVIHLAENQGKANA  125 (420)
T ss_pred             CCCCCEEEEEecCCCHHHHHHHHHHHHh---CCCCCeEEEEEECCCCccHHHHHHHHHHhCCc--EEEEEcCCCCCHHHH
Confidence            3468999999999999999998888754   67789999999999999999999999888774  556666779999999


Q ss_pred             HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHH----HHHHHHH--HHH
Q psy3650         277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLV----SRGANYL--TQL  349 (435)
Q Consensus       277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~  349 (435)
                      +|.|++.+++||++++|+|+.++|+++.++++.++ +++.++|+|.....+...    ......    .......  ...
T Consensus       126 ln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  201 (420)
T PRK11204        126 LNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRST----LLGRIQVGEFSSIIGLIKRAQR  201 (420)
T ss_pred             HHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchh----HHHHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999984 667888888665544321    111111    0000111  111


Q ss_pred             hcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHH
Q psy3650         350 LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKAL  428 (435)
Q Consensus       350 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~  428 (435)
                      .. ......+|++.++||++++++|+..+ ..+.||+|++.|+.++|+++.++|.....+....+-.. .++..|+..+.
T Consensus       202 ~~-~~~~~~~G~~~~~rr~~l~~vgg~~~-~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G~  279 (420)
T PRK11204        202 VY-GRVFTVSGVITAFRKSALHEVGYWST-DMITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQGG  279 (420)
T ss_pred             Hh-CCceEecceeeeeeHHHHHHhCCCCC-CcccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcCH
Confidence            11 22334578889999999999987543 34679999999999999999999987776655544333 56677777665


Q ss_pred             HHHh
Q psy3650         429 LYLF  432 (435)
Q Consensus       429 ~~~f  432 (435)
                      ++.+
T Consensus       280 ~~~l  283 (420)
T PRK11204        280 AEVL  283 (420)
T ss_pred             HHHH
Confidence            5543

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=99.95  E-value=5.9e-27  Score=207.53  Aligned_cols=218  Identities=19%  Similarity=0.229  Sum_probs=158.1

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhC--CceEEEecCCCCCC-HH
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYG--SEKIVLKPRKKKLG-LG  274 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~~~~~~~n~g-~~  274 (435)
                      |++|||||+||+++.+.++|+++.+   |.++  .+||||+|| |+|+|.++++++..+++  ..+++.+...++.| ++
T Consensus         1 p~vSViIp~yNe~~~l~~~L~sl~~---q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~   76 (232)
T cd06437           1 PMVTVQLPVFNEKYVVERLIEAACA---LDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKA   76 (232)
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHh---cCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCch
Confidence            5799999999999999999999865   4443  479999997 99999999998765543  33566665665667 68


Q ss_pred             HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHH--H-HHH--H
Q psy3650         275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN--Y-LTQ--L  349 (435)
Q Consensus       275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~--~  349 (435)
                      .|+|.|++.+++|||+++|+|+.++|++|+++...+.++++++|.+.....+...   ++..........  . ...  .
T Consensus        77 ~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  153 (232)
T cd06437          77 GALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANY---SLLTRVQAMSLDYHFTIEQVAR  153 (232)
T ss_pred             HHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCC---chhhHhhhhhHHhhhhHhHhhH
Confidence            9999999999999999999999999999999888877777787877654433211   122111111011  0 000  1


Q ss_pred             hcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHH
Q psy3650         350 LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFA  425 (435)
Q Consensus       350 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~  425 (435)
                      .....+....|++.+|||++++++|++.. ..+.||++|++|+..+|+++.++|-..+++....+-.+ +++.+||.
T Consensus       154 ~~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~rW~  229 (232)
T cd06437         154 SSTGLFFNFNGTAGVWRKECIEDAGGWNH-DTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMSAYRSQQHRWS  229 (232)
T ss_pred             hhcCCeEEeccchhhhhHHHHHHhCCCCC-CcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHHHHHHHHHHhc
Confidence            11112223456667899999999987654 45679999999999999999999988888766665555 35566654

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=99.95  E-value=1.2e-26  Score=218.86  Aligned_cols=222  Identities=14%  Similarity=0.134  Sum_probs=165.2

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LG  274 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~  274 (435)
                      ..|+|||+||+|||++.++++++++.+   |.++++|||++||+|+|.|.++++++.+++|+.+++++..+++.|   |.
T Consensus        39 ~~p~VSViiP~~nee~~l~~~L~Sl~~---q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~  115 (373)
T TIGR03472        39 AWPPVSVLKPLHGDEPELYENLASFCR---QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKV  115 (373)
T ss_pred             CCCCeEEEEECCCCChhHHHHHHHHHh---cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHH
Confidence            368899999999999999999988755   778889999999999999999999999999987776665555555   66


Q ss_pred             HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHH------HHHHH
Q psy3650         275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGA------NYLTQ  348 (435)
Q Consensus       275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  348 (435)
                      .+.+.+++.|++|+++++|+|+.++|++|++++..+++++.++|++........    .++..+.....      .....
T Consensus       116 ~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~  191 (373)
T TIGR03472       116 SNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVP----GFWSRLGAMGINHNFLPSVMVA  191 (373)
T ss_pred             HHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCC----CHHHHHHHHHhhhhhhHHHHHH
Confidence            778888999999999999999999999999999999888889988854322211    22222211111      11111


Q ss_pred             HhcCCCccccccceeeecHHHHHHhhhccc-CcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHH
Q psy3650         349 LLLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAK  426 (435)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~  426 (435)
                      ...+ ....+.|.++++||++++++|++.. .....||++++.++.++|+++.+.|....++....|-.. +++..|+.+
T Consensus       192 ~~~~-~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~~~s~~~~~~q~~RW~r  270 (373)
T TIGR03472       192 RALG-RARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRWSR  270 (373)
T ss_pred             Hhcc-CCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCCccCHHHHHHHHHHHHh
Confidence            1122 2234678889999999999987654 345579999999999999999999977666554333222 344444443


Q ss_pred             H
Q psy3650         427 A  427 (435)
Q Consensus       427 ~  427 (435)
                      .
T Consensus       271 ~  271 (373)
T TIGR03472       271 T  271 (373)
T ss_pred             h
Confidence            3

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=99.95  E-value=2.5e-26  Score=221.60  Aligned_cols=223  Identities=15%  Similarity=0.167  Sum_probs=167.4

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..|.+||+||+|||+..++++++++.+   |.++++||++|||||+|+|.+.++++.++++.  +.++..++|.|++.|+
T Consensus        73 ~~p~vsViIP~yNE~~~i~~~l~sll~---q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~--v~vv~~~~n~Gka~Al  147 (444)
T PRK14583         73 GHPLVSILVPCFNEGLNARETIHAALA---QTYTNIEVIAINDGSSDDTAQVLDALLAEDPR--LRVIHLAHNQGKAIAL  147 (444)
T ss_pred             CCCcEEEEEEeCCCHHHHHHHHHHHHc---CCCCCeEEEEEECCCCccHHHHHHHHHHhCCC--EEEEEeCCCCCHHHHH
Confidence            468899999999999988888887654   67788999999999999999999999888775  4455556789999999


Q ss_pred             HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHH---HHHHHHHHHH--Hhc
Q psy3650         278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKL---VSRGANYLTQ--LLL  351 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~  351 (435)
                      |.|++.+++||++++|+|+.++|+++.+++..+. +++.++|+|.....+....   ..+..   .........+  ...
T Consensus       148 N~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~---~~~~~~~e~~~~~~~~~~~~~~~  224 (444)
T PRK14583        148 RMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTL---IGRVQVGEFSSIIGLIKRTQRVY  224 (444)
T ss_pred             HHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcc---hhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999875 4567888886655443211   11111   1111111111  122


Q ss_pred             CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHHHH
Q psy3650         352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKALLY  430 (435)
Q Consensus       352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~  430 (435)
                      + .....+|++.+|+|++++++|+.. .....||.|++.|++.+|+++.+.|-.........+-.. +++..|+..+.+.
T Consensus       225 g-~~~~~sG~~~~~rr~al~~vGg~~-~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~~~  302 (444)
T PRK14583        225 G-QVFTVSGVVAAFRRRALADVGYWS-PDMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGGAE  302 (444)
T ss_pred             C-CceEecCceeEEEHHHHHHcCCCC-CCcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcHHH
Confidence            2 233457888999999999998754 334689999999999999999999987766654444433 5667777655443

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=99.95  E-value=1.2e-26  Score=206.09  Aligned_cols=222  Identities=17%  Similarity=0.172  Sum_probs=159.2

Q ss_pred             cceEEEEeccCCC-CChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC-HHH
Q psy3650         200 NKYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-LGT  275 (435)
Q Consensus       200 ~~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~~  275 (435)
                      |++|||||+||++ +.++++++++..   |.+++  +|||||||||+|+|.++++++...+   .+.++..+.|.| ++.
T Consensus         1 p~vsviip~~n~~~~~l~~~l~sl~~---q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~   74 (234)
T cd06421           1 PTVDVFIPTYNEPLEIVRKTLRAALA---IDYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNRHAKAG   74 (234)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHh---cCCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCCCCcHH
Confidence            5799999999986 467788877765   66767  8999999999999999999987654   233333444545 678


Q ss_pred             HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchhHHHHHH---HHHHHHHHhc
Q psy3650         276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSR---GANYLTQLLL  351 (435)
Q Consensus       276 a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  351 (435)
                      ++|.|++.+++||++++|+|+.++|++|.+++..+.+ ++.+++.+........... ...+.....   ..........
T Consensus        75 ~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  153 (234)
T cd06421          75 NLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFD-WLADGAPNEQELFYGVIQPGRD  153 (234)
T ss_pred             HHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcch-hHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999976 6677887766554332110 011111111   1111111111


Q ss_pred             CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHHHHHH
Q psy3650         352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFAKALL  429 (435)
Q Consensus       352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~~~  429 (435)
                      ........|++++|+|+++++++++. ...+.+|+++++|+.++|+++.++|....++....+-. .+++..|+..+.+
T Consensus       154 ~~~~~~~~g~~~~~r~~~~~~ig~~~-~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~~~  231 (234)
T cd06421         154 RWGAAFCCGSGAVVRREALDEIGGFP-TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARGML  231 (234)
T ss_pred             hcCCceecCceeeEeHHHHHHhCCCC-ccceeccHHHHHHHHHcCceEEEecCccccccCCccHHHHHHHHHHHhcCCe
Confidence            12344567888999999999998754 34567999999999999999999998877665444333 3566777665543

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=99.95  E-value=2.1e-26  Score=205.06  Aligned_cols=181  Identities=67%  Similarity=1.115  Sum_probs=156.8

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      ++|||||||||+|+|.++++++.++++...+.++..+.|.|+++|+|.|++.|+|||++++|+|+.++|++|+.+++.+.
T Consensus        40 ~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~  119 (243)
T PLN02726         40 DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQR  119 (243)
T ss_pred             CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence            69999999999999999999998887766777777889999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHHH
Q psy3650          87 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIR  166 (435)
Q Consensus        87 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r  166 (435)
                      ++++++|+|.+........++.+.+++.+.....+.....+.++.+..|++.+|+|++++.++......+|.+|.|++++
T Consensus       120 ~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~  199 (243)
T PLN02726        120 ETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVR  199 (243)
T ss_pred             hcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHH
Confidence            78899999998665444334455566666666666666777788899999999999999999766666788889999999


Q ss_pred             HHhhcceeEeeeeEeeecccc
Q psy3650         167 ARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       167 ~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      +.+.|+++.++|+.+..|..+
T Consensus       200 ~~~~g~~i~~vp~~~~~r~~g  220 (243)
T PLN02726        200 ASRKGYRIEEVPITFVDRVYG  220 (243)
T ss_pred             HHHcCCcEEEeCcEEeCCCCC
Confidence            999999999999998887754

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=99.94  E-value=1.1e-25  Score=216.49  Aligned_cols=230  Identities=15%  Similarity=0.150  Sum_probs=167.2

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHH
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLG  274 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~  274 (435)
                      ...|++||+||+||+++.+.++++++.+   |.+++  +||+||||||+|+|.++++++.+.++.+.++..  +++.|++
T Consensus        46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~---q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka  120 (439)
T TIGR03111        46 GKLPDITIIIPVYNSEDTLFNCIESIYN---QTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKA  120 (439)
T ss_pred             CCCCCEEEEEEeCCChHHHHHHHHHHHh---cCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHH
Confidence            3468999999999999999999998865   55544  799999999999999999999888886555544  4578999


Q ss_pred             HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceec-cchhHHHHHH--HHHHHHHHh
Q psy3650         275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYG-WDFKRKLVSR--GANYLTQLL  350 (435)
Q Consensus       275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~  350 (435)
                      .|+|.|++.+++||++++|+|+.++|++++++++.+. +++.++++|......+.... ......+..+  ...+.....
T Consensus       121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l  200 (439)
T TIGR03111       121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL  200 (439)
T ss_pred             HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence            9999999999999999999999999999999999996 45567777766543221110 0111111111  111111111


Q ss_pred             c-------CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHH-HCCCcEEEeeeEEeecccccc-cCCHHHH
Q psy3650         351 L-------RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRAR-QYNYTIGEVPISFVDRVYGES-KLGGTEI  421 (435)
Q Consensus       351 ~-------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~-~~G~~i~~~p~~~~~~~~~~s-~~~~~~~  421 (435)
                      .       .......+|+|++|||++++++|++.. ....||+|+++|+. ..|+++.++|.+..++....+ +..+++.
T Consensus       201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~-~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~t~~~~~~QR  279 (439)
T TIGR03111       201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNS-ETVGEDTDMTFQIRELLDGKVYLCENAIFYVDPIDGLNKLYTQR  279 (439)
T ss_pred             hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCC-CCcCccHHHHHHHHHhcCCeEEECCCCEEEEECCcCHHHHHHHH
Confidence            1       113345688889999999999987543 34689999999996 569999999987776654432 3346667


Q ss_pred             HHHHHHHHHHh
Q psy3650         422 FQFAKALLYLF  432 (435)
Q Consensus       422 ~~~~~~~~~~f  432 (435)
                      .|+.+..++++
T Consensus       280 ~RW~rG~~qv~  290 (439)
T TIGR03111       280 QRWQRGELEVS  290 (439)
T ss_pred             HHHhccHHHHH
Confidence            77766665543

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=99.94  E-value=8.8e-27  Score=206.00  Aligned_cols=221  Identities=20%  Similarity=0.268  Sum_probs=142.4

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HHHH
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTA  276 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~~a  276 (435)
                      |+|+|+||+||+...+.++|+++.+   |.+++++|+||||+|++++.+.++++.+.+|..++.++..+.|.|   ++.+
T Consensus         1 P~v~Vvip~~~~~~~l~~~l~sl~~---~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a   77 (228)
T PF13641_consen    1 PRVSVVIPAYNEDDVLRRCLESLLA---QDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARA   77 (228)
T ss_dssp             --EEEE--BSS-HHHHHHHHHHHTT---SHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHH
T ss_pred             CEEEEEEEecCCHHHHHHHHHHHHc---CCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHH
Confidence            6799999999999988888888764   445789999999999999999999998888876777776666565   7899


Q ss_pred             HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHH-HHHHHHHHHHhcCCCc
Q psy3650         277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV-SRGANYLTQLLLRPGV  355 (435)
Q Consensus       277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  355 (435)
                      +|.|++.+++|+++++|+|+.++|++|.+++..+.++++++|.+.....+.... ......+. ..............+.
T Consensus        78 ~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  156 (228)
T PF13641_consen   78 LNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNW-LTRLQDLFFARWHLRFRSGRRALGV  156 (228)
T ss_dssp             HHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCE-EEE-TT--S-EETTTS-TT-B----
T ss_pred             HHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCH-HHHHHHHHHhhhhhhhhhhhcccce
Confidence            999999999999999999999999999999999988899999988866543321 11111110 0000000001111223


Q ss_pred             cccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHH
Q psy3650         356 SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFA  425 (435)
Q Consensus       356 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~  425 (435)
                      ..+.|++++|+|+++++++++.. ....+|.+++.|+.++|+++.++|...+.|....+-. .+++..||.
T Consensus       157 ~~~~G~~~~~rr~~~~~~g~fd~-~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~RW~  226 (228)
T PF13641_consen  157 AFLSGSGMLFRRSALEEVGGFDP-FILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLKAFFKQRFRWS  226 (228)
T ss_dssp             S-B--TEEEEEHHHHHHH-S--S-SSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTHHHHHHHHHHH
T ss_pred             eeccCcEEEEEHHHHHHhCCCCC-CCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHHHHHHHHhccC
Confidence            33568899999999999987655 6666999999999999999999998887776554433 356666665

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=99.94  E-value=6.6e-25  Score=196.96  Aligned_cols=223  Identities=18%  Similarity=0.220  Sum_probs=164.2

Q ss_pred             ecCCCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCC
Q psy3650         193 MSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKK  270 (435)
Q Consensus       193 ~~~~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n  270 (435)
                      .......|++|||||+||++..+.++|+++.+   |.+++  +|||||||+|+|+|.++++++.+.    .+.++..++|
T Consensus        22 ~~~~~~~~~isVvip~~n~~~~l~~~l~si~~---q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~~   94 (251)
T cd06439          22 LPDPAYLPTVTIIIPAYNEEAVIEAKLENLLA---LDYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPER   94 (251)
T ss_pred             CCCCCCCCEEEEEEecCCcHHHHHHHHHHHHh---CcCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCCC
Confidence            44445678999999999999999999888865   44444  899999999999999999988654    3556667789


Q ss_pred             CCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650         271 LGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL  350 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
                      .|++.++|.|++.+++||++++|+|+.++++++.+++..+.+++.++++|.........  ..............+....
T Consensus        95 ~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  172 (251)
T cd06439          95 RGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGG--SGSGEGLYWKYENWLKRAE  172 (251)
T ss_pred             CChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcc--cchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998778888888776644321  0111111111112111111


Q ss_pred             c-CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHHHHH
Q psy3650         351 L-RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFAKAL  428 (435)
Q Consensus       351 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~~  428 (435)
                      . ........|++++++|++++..    ......+|.+++.++.++|+++.++|....++..+.+.. .+++..|+..+-
T Consensus       173 ~~~~~~~~~~g~~~~~rr~~~~~~----~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~g~  248 (251)
T cd06439         173 SRLGSTVGANGAIYAIRRELFRPL----PADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAEDGSEEFRRRVRIAAGN  248 (251)
T ss_pred             HhcCCeeeecchHHHhHHHHhcCC----CcccchhHHHHHHHHHHcCCeEEeccccEEEEeCcccHHHHHHHHHHHHhcc
Confidence            1 1223446777888999999822    223446899999999999999999998887776665443 355566665543

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=99.94  E-value=2.1e-25  Score=198.21  Aligned_cols=220  Identities=15%  Similarity=0.205  Sum_probs=155.7

Q ss_pred             EEEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchH-HHHHHHHHHhCCceEEEecCCCCCC-HHHHHHH
Q psy3650         203 TVLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLG-LGTAYMH  279 (435)
Q Consensus       203 sivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~~~~~~~n~g-~~~a~n~  279 (435)
                      |||||+||++ +.++++++++.+   |.++++|||||||+|+|+|. +.++++.++.+. ++.++...+|.| ++.|+|.
T Consensus         1 siiip~~ne~~~~l~~~l~sl~~---q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~-~i~~i~~~~~~G~~~~a~n~   76 (236)
T cd06435           1 SIHVPCYEEPPEMVKETLDSLAA---LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGE-RFRFFHVEPLPGAKAGALNY   76 (236)
T ss_pred             CeeEeeCCCcHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCC-cEEEEEcCCCCCCchHHHHH
Confidence            7999999998 678888888764   66778999999999999975 667777665432 455555566677 5899999


Q ss_pred             HHhhcc--CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH-HHHHHHH-Hh--cCC
Q psy3650         280 GLKYAT--GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR-GANYLTQ-LL--LRP  353 (435)
Q Consensus       280 g~~~a~--~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~--~~~  353 (435)
                      |++.+.  +||++++|+|+.++|++|.+++..++++++++|.+.........   ..+...... ....+.. ..  ...
T Consensus        77 g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  153 (236)
T cd06435          77 ALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEE---SLFKRMCYAEYKGFFDIGMVSRNER  153 (236)
T ss_pred             HHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCc---cHHHHHHhHHHHHHHHHHhcccccc
Confidence            999985  69999999999999999999999998777888877543332211   111111111 0011100 00  111


Q ss_pred             CccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHHHH
Q psy3650         354 GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKALLY  430 (435)
Q Consensus       354 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~  430 (435)
                      ......|++++++|++++++|++... .+.+|+++++|+.+.|+++.++|....+.....+-.. .++..|+....++
T Consensus       154 ~~~~~~g~~~~~rr~~~~~iGgf~~~-~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~~~~~~~q~~rw~~g~~~  230 (236)
T cd06435         154 NAIIQHGTMCLIRRSALDDVGGWDEW-CITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWAYGAVQ  230 (236)
T ss_pred             CceEEecceEEEEHHHHHHhCCCCCc-cccchHHHHHHHHHCCcEEEEcchhhccCcCcccHHHHHHHHHHHhcchhh
Confidence            22335677899999999999876543 3679999999999999999999987776544444333 3445666655544

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=99.94  E-value=4.9e-25  Score=200.42  Aligned_cols=228  Identities=22%  Similarity=0.268  Sum_probs=161.3

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..+++|||||+||+++.+.++++++.+++.+ ....|||||||||+|.|.++++++....-.....+...+.|.|++.|+
T Consensus        29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~  107 (306)
T PRK13915         29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEAL  107 (306)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHH
Confidence            4689999999999999999999999875543 335799999999999999999887433111001111136689999999


Q ss_pred             HHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHh-cCCCceEEeeeEECCC--ceeccchhHHHHHHHHHHHHHHhcC-
Q psy3650         278 MHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQ-QENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLR-  352 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-  352 (435)
                      |.|+..+++|+++++|+|.. ++|+++.+++..+. +++.++|.|.......  ..................+.+.... 
T Consensus       108 ~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~~~~~~  187 (306)
T PRK13915        108 WRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLNLLRPE  187 (306)
T ss_pred             HHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHHHHHHh
Confidence            99999999999999999996 89999999999986 6778999886432210  0000000111112222222222211 


Q ss_pred             -CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHH-HCCC-cEEEeeeEEeecccccccCCHHHHHHHHHHHH
Q psy3650         353 -PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRAR-QYNY-TIGEVPISFVDRVYGESKLGGTEIFQFAKALL  429 (435)
Q Consensus       353 -~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~-~~G~-~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~  429 (435)
                       ..+.++.+|+++++|++++++.   ...+|..+.++++.+. +.|+ ++.++++..+.|..    ...+.+.+++..++
T Consensus       188 l~~i~dp~sG~~a~rr~~l~~l~---~~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~h~~----~~~~~~~~m~~~i~  260 (306)
T PRK13915        188 LAGFVQPLGGEYAGRRELLESLP---FVPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRAHRN----QPLRALGRMARQII  260 (306)
T ss_pred             hhcccCcchHhHHHHHHHHHhCC---CCCCCeehHHHHHHHHHHhCcCceEEEEecccccCC----CCHHHHHHHHHHHH
Confidence             3456778888999999999983   3466888999999976 5687 89999987665553    23566777777776


Q ss_pred             HHhh
Q psy3650         430 YLFA  433 (435)
Q Consensus       430 ~~f~  433 (435)
                      +.++
T Consensus       261 ~~~~  264 (306)
T PRK13915        261 ATAL  264 (306)
T ss_pred             HHHH
Confidence            6654

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=99.93  E-value=9.6e-25  Score=206.59  Aligned_cols=199  Identities=20%  Similarity=0.259  Sum_probs=149.9

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCC-CeEEEEEeCCCCcchHHHHHHHHHHhCCc-eEEEecCC----CC
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNY-PYEIIVIDDGSPDGTLDAAKQLQSIYGSE-KIVLKPRK----KK  270 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~i~~~~~~----~n  270 (435)
                      ...|++|||||+|||++.++++++++.+   |.++ ++|||||||+|+|+|.++++++.+++|.. +++++..+    .+
T Consensus        37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~---q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~  113 (384)
T TIGR03469        37 EAWPAVVAVVPARNEADVIGECVTSLLE---QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGW  113 (384)
T ss_pred             CCCCCEEEEEecCCcHhHHHHHHHHHHh---CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence            3468999999999999999999998865   5565 69999999999999999999998777622 35555432    34


Q ss_pred             CCHHHHHHHHHhhcc-----CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHH
Q psy3650         271 LGLGTAYMHGLKYAT-----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY  345 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~-----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (435)
                      .|++.|+|.|++.|+     +|+++++|+|+.++|+++++++..+++++.+++.+.......+     .+..........
T Consensus       114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~-----~~~~~~~~~~~~  188 (384)
T TIGR03469       114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCES-----FWEKLLIPAFVF  188 (384)
T ss_pred             cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCC-----HHHHHHHHHHHH
Confidence            689999999999999     9999999999999999999999999887888887654333221     222221111111


Q ss_pred             HHHHh------c--CCCccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEee
Q psy3650         346 LTQLL------L--RPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       346 ~~~~~------~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      .....      .  ........|+|++++|++++++|++.+. ..+.||.+++.|+.++|+++...+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~~~  255 (384)
T TIGR03469       189 FFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGL  255 (384)
T ss_pred             HHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEEEe
Confidence            11100      0  1123335789999999999999876542 456799999999999999998865

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=99.93  E-value=2.8e-25  Score=192.59  Aligned_cols=195  Identities=19%  Similarity=0.271  Sum_probs=146.5

Q ss_pred             cceEEEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchH-HHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         200 NKYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       200 ~~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      |++|||||+||+. +.++++|+++.+   |.++++|||||||||+|++. ++++.+..+++.  +.++..++|.|.+.++
T Consensus         1 p~vsiii~~~n~~~~~l~~~l~sl~~---q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~a~   75 (202)
T cd04184           1 PLISIVMPVYNTPEKYLREAIESVRA---QTYPNWELCIADDASTDPEVKRVLKKYAAQDPR--IKVVFREENGGISAAT   75 (202)
T ss_pred             CeEEEEEecccCcHHHHHHHHHHHHh---CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCC--EEEEEcccCCCHHHHH
Confidence            5799999999999 989998888865   66678999999999999754 556666665553  5555677899999999


Q ss_pred             HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCC-ceeccchhHHHHHHHHHHHHHHhcCCCc
Q psy3650         278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTG-GVYGWDFKRKLVSRGANYLTQLLLRPGV  355 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (435)
                      |.|++.+++||++++|+|+.++|+++..++..+ .+++.+++.+....... .....+.......      .......  
T Consensus        76 n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--  147 (202)
T cd04184          76 NSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWS------PDLLLSQ--  147 (202)
T ss_pred             HHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCC------HHHhhhc--
Confidence            999999999999999999999999999999998 67778888775533221 1111111100000      0011111  


Q ss_pred             cccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEee
Q psy3650         356 SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD  408 (435)
Q Consensus       356 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~  408 (435)
                       ...+++++++|++++++|++.+.....+|+||++|+.++|+++.++|....+
T Consensus       148 -~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~~~~~  199 (202)
T cd04184         148 -NYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIPRVLYH  199 (202)
T ss_pred             -CCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEccHhhhh
Confidence             2345667999999999987766555678999999999999999999975543

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=99.93  E-value=6.2e-25  Score=191.62  Aligned_cols=180  Identities=30%  Similarity=0.507  Sum_probs=154.2

Q ss_pred             CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650           5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL   84 (435)
Q Consensus         5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~   84 (435)
                      ..++|||||||||+|+|.++++++.++++.. ++++..+.|.|+++|+|.|++.|.||||+++|+|+.++|++++.+++.
T Consensus        28 ~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~-i~~i~~~~n~G~~~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~  106 (211)
T cd04188          28 SFSYEIIVVDDGSKDGTAEVARKLARKNPAL-IRVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEA  106 (211)
T ss_pred             CCCEEEEEEeCCCCCchHHHHHHHHHhCCCc-EEEEEcccCCCcHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            3569999999999999999999998877753 566667889999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEeeeecCCCc-cCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHH
Q psy3650          85 QQQENLDVVTGTRYVGTGGV-YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEM  163 (435)
Q Consensus        85 ~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l  163 (435)
                      +.+++.++|+|++....... ....+.+.+...........+.+..+.+..+++.+|+++++.+++......+|.+|.|+
T Consensus       107 ~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el  186 (211)
T cd04188         107 LKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVEL  186 (211)
T ss_pred             HhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccCceeEcHHHHHHHHhhhhccceEeeHHH
Confidence            87788999999987664432 33456666776666666666677788888999999999999998655566788889999


Q ss_pred             HHHHHhhcceeEeeeeEeeecc
Q psy3650         164 VIRARQYNYTIGEVPISFVDRV  185 (435)
Q Consensus       164 ~~r~~~~g~~~~~~~~~~~~r~  185 (435)
                      ..|+.+.|+++.++|+.+..|.
T Consensus       187 ~~r~~~~g~~~~~vpi~~~~~~  208 (211)
T cd04188         187 LVLARRLGYPIEEVPVRWVEIP  208 (211)
T ss_pred             HHHHHHcCCeEEEcCcceecCC
Confidence            9999999999999999988876

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=99.93  E-value=5.1e-25  Score=188.14  Aligned_cols=185  Identities=40%  Similarity=0.679  Sum_probs=156.9

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      |+||+||+...+.++|+++.++..+ ...+|||||||+|+|++.+.++++..+.+.  ++++..++|.|++.|+|.|++.
T Consensus         1 iii~~~n~~~~l~~~l~sl~~~~~~-~~~~eiivvd~~s~d~~~~~~~~~~~~~~~--~~~~~~~~n~G~~~a~n~g~~~   77 (185)
T cd04179           1 VVIPAYNEEENIPELVERLLAVLEE-GYDYEIIVVDDGSTDGTAEIARELAARVPR--VRVIRLSRNFGKGAAVRAGFKA   77 (185)
T ss_pred             CeecccChHhhHHHHHHHHHHHhcc-CCCEEEEEEcCCCCCChHHHHHHHHHhCCC--eEEEEccCCCCccHHHHHHHHH
Confidence            6899999999999999999875432 458999999999999999999999887764  4566678899999999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR  363 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
                      |+|||++++|+|+.+.|++|++++..+.+.+.++|+|.+....+. ...+..+.+.............+..+....|+++
T Consensus        78 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (185)
T cd04179          78 ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGG-AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFR  156 (185)
T ss_pred             hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCc-ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCcee
Confidence            999999999999999999999999997777899999998776654 3345666666666666666667788888899999


Q ss_pred             eecHHHHHHhhhcccCcccchhhHHHHHH
Q psy3650         364 LYKKQVLENLVSSCVSKGYVFQMEMVIRA  392 (435)
Q Consensus       364 ~~~r~~~~~~~~~~~~~~~~~D~el~lr~  392 (435)
                      +++|+++++++......+|.+|+|+++|+
T Consensus       157 ~~~r~~~~~i~~~~~~~~~~~~~~~~~~~  185 (185)
T cd04179         157 LFRREVLEALLSLLESNGFEFGLELLVGA  185 (185)
T ss_pred             eeHHHHHHHHHhhccccCcceeeEeeecC
Confidence            99999999997556677888888988764

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=99.93  E-value=7.6e-25  Score=196.36  Aligned_cols=219  Identities=19%  Similarity=0.141  Sum_probs=162.3

Q ss_pred             ceEEEEeccCCCCChHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         201 KYTVLLPTYNEKENLPIIVYLITKYMDEGN--YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       201 ~isivip~~n~~~~l~~~l~~l~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      ++|||||+||+.+.+.++++++.+   |.+  .++|||||||+|+|++.+.++++..+.+.  +.++.++ +.|.+.|+|
T Consensus         1 ~~sIiip~~n~~~~l~~~l~sl~~---q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~--v~~i~~~-~~~~~~a~N   74 (249)
T cd02525           1 FVSIIIPVRNEEKYIEELLESLLN---QSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPR--IRLIDNP-KRIQSAGLN   74 (249)
T ss_pred             CEEEEEEcCCchhhHHHHHHHHHh---ccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCe--EEEEeCC-CCCchHHHH
Confidence            489999999999999999988865   444  57899999999999999999999877554  5555554 668999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHH-------HHhc
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT-------QLLL  351 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~  351 (435)
                      .|++.+++||++++|+|+.++|++|+++++.+.+++.+++.|..........    .. ..........       ....
T Consensus        75 ~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~  149 (249)
T cd02525          75 IGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKF----QK-AIAVAQSSPLGSGGSAYRGGA  149 (249)
T ss_pred             HHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChH----HH-HHHHHhhchhccCCccccccc
Confidence            9999999999999999999999999999999888888888888765543311    11 1111111000       0000


Q ss_pred             CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeeccccccc-CCHHHHHHHHHHHHH
Q psy3650         352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK-LGGTEIFQFAKALLY  430 (435)
Q Consensus       352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~-~~~~~~~~~~~~~~~  430 (435)
                      ........|++.+++|++++++++..+.....+|.++++|+.++|+++.++|....++....|- .-+++.+++....++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~~  229 (249)
T cd02525         150 VKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLKKLARQYFRYGKWRAR  229 (249)
T ss_pred             cccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCHHHHHHHHHHHhhhhHH
Confidence            1102245677889999999999876665566799999999999999999999877666544432 224555666555543

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>PRK10063 putative glycosyl transferase; Provisional

Probab=99.93  E-value=2.2e-24  Score=191.17  Aligned_cols=204  Identities=15%  Similarity=0.209  Sum_probs=146.6

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH  279 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~  279 (435)
                      |++|||||+||+++.++++++++.++..+.+.++|||||||||+|+|.++++++....   ++.++.. +|.|.+.|+|.
T Consensus         1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~-~~~G~~~A~N~   76 (248)
T PRK10063          1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSE-PDNGIYDAMNK   76 (248)
T ss_pred             CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEEC-CCCCHHHHHHH
Confidence            6899999999999999999999987656667789999999999999999999875432   3555554 46799999999


Q ss_pred             HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccc
Q psy3650         280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLT  359 (435)
Q Consensus       280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (435)
                      |++.|+||||+++|+|+...|+.++.+.....+++.++++|.+....+...  ...+....   ...   ... .. ...
T Consensus        77 Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~--~~~~~~~~---~~~---~~~-~~-~~~  146 (248)
T PRK10063         77 GIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGDGH--KIKRSAKP---GWY---IYH-SL-PAS  146 (248)
T ss_pred             HHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcCCCc--EEEEccCC---hhH---Hhc-CC-CCC
Confidence            999999999999999999888876544433345566778887754322110  01110000   000   000 11 123


Q ss_pred             cceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEe-ecccccccCCH
Q psy3650         360 GSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFV-DRVYGESKLGG  418 (435)
Q Consensus       360 ~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~-~~~~~~s~~~~  418 (435)
                      +...+++++.++.. ++.....+.+|+|+.+|+..+|+++.++|.... ++.+|.|..+.
T Consensus       147 ~~~~~~~~~~~~~~-~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~y~~~g~S~~~~  205 (248)
T PRK10063        147 HQAIFFPVSGLKKW-RYDLQYKVSSDYALAARLYKAGYAFKKLNGLVSEFSMGGVSTTNN  205 (248)
T ss_pred             CcEEEEEHHHHhcC-CCCcccchHHhHHHHHHHHHcCCcEEEcCceeEEEeCCCCcCchH
Confidence            34568899988753 344555677999999999999999999998664 46777776653

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=99.93  E-value=2.4e-24  Score=189.08  Aligned_cols=198  Identities=12%  Similarity=0.110  Sum_probs=139.9

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCC-CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEec----CCCCCCHHHHHH
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNY-PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP----RKKKLGLGTAYM  278 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~----~~~n~g~~~a~n  278 (435)
                      ||||+||+++.++++|+++..   |.++ ++|||||||||+|+|.++++++.++.+..++.++.    .+.+.|.+.|+|
T Consensus         1 ViIp~yn~~~~l~~~l~sl~~---q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N   77 (219)
T cd06913           1 IILPVHNGEQWLDECLESVLQ---QDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKN   77 (219)
T ss_pred             CEEeecCcHHHHHHHHHHHHh---CCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHH
Confidence            689999999999999999865   5555 59999999999999999999988776544444432    345689999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHH-HHHH-HhcCCCcc
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN-YLTQ-LLLRPGVS  356 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~  356 (435)
                      .|++.|+|||++++|+|+.++|+++.+++..+.+.+..++.+..........  ..+......... .+.. ....... 
T Consensus        78 ~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-  154 (219)
T cd06913          78 QAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDST--ERYTRWINTLTREQLLTQVYTSHGP-  154 (219)
T ss_pred             HHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccc--hhhHHHHHhcCHHHHHHHHHhhcCC-
Confidence            9999999999999999999999999999988876555544433322221111  111111111111 1111 1111111 


Q ss_pred             ccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEe
Q psy3650         357 DLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFV  407 (435)
Q Consensus       357 ~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~  407 (435)
                      ......++++|++++++|++.+. ..+.+|++|++|+.++|.++.++|....
T Consensus       155 ~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~  206 (219)
T cd06913         155 TVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLL  206 (219)
T ss_pred             ccccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceee
Confidence            11122257999999999876554 4566999999999999999999997553

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=99.93  E-value=1.5e-24  Score=200.17  Aligned_cols=179  Identities=24%  Similarity=0.404  Sum_probs=154.8

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHh--CCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK   83 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~   83 (435)
                      .++|||||||||+|+|.++++++++++  +..++.++..+.|.|+++|+|.|+..|+||||+++|+|+.++|+.++.+++
T Consensus       106 ~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~  185 (333)
T PTZ00260        106 FKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLED  185 (333)
T ss_pred             CCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHH
Confidence            369999999999999999999998764  444577777889999999999999999999999999999999999999999


Q ss_pred             HHhc---CCCcEEEEeeeecCC--CccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCch
Q psy3650          84 LQQQ---ENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV  158 (435)
Q Consensus        84 ~~~~---~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (435)
                      .+.+   +++|+|+|++.....  ....+++.+++....++.....+.+..+.|..||+++|++++++.+.......+|.
T Consensus       186 ~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~  265 (333)
T PTZ00260        186 IMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWA  265 (333)
T ss_pred             HHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHHHHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCcc
Confidence            8864   678999999865432  23455678888888888888888899999999999999999999874444557888


Q ss_pred             hhHHHHHHHHhhcceeEeeeeEeeec
Q psy3650         159 FQMEMVIRARQYNYTIGEVPISFVDR  184 (435)
Q Consensus       159 ~d~~l~~r~~~~g~~~~~~~~~~~~r  184 (435)
                      +|.|+..++.+.|+++.++|+.+..+
T Consensus       266 fd~Ell~~a~~~g~~I~EvPv~~~~~  291 (333)
T PTZ00260        266 FDIEIVMIAQKLNLPIAEVPVNWTEV  291 (333)
T ss_pred             chHHHHHHHHHcCCCEEEEceeeEEC
Confidence            99999999999999999999987554

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=99.93  E-value=4.6e-24  Score=181.49  Aligned_cols=179  Identities=31%  Similarity=0.482  Sum_probs=151.5

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      ||||+||++..+.++++++.++..|....+|||||||||+|+|.++++.+..++++  +.++...+|.|++.|+|.|++.
T Consensus         1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--i~~i~~~~n~G~~~a~n~g~~~   78 (181)
T cd04187           1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPR--VKVIRLSRNFGQQAALLAGLDH   78 (181)
T ss_pred             CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCC--EEEEEecCCCCcHHHHHHHHHh
Confidence            68999999999999999999888777778999999999999999999999887774  5556667899999999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR  363 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
                      +.+||++++|+|..++++++.+++..+ +++.++|.|.+.....     +....+..+..........+..+.+..|+++
T Consensus        79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (181)
T cd04187          79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVVYGVRKNRKE-----SWLKRLTSKLFYRLINKLSGVDIPDNGGDFR  152 (181)
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEEEEEecCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCCCCCCEE
Confidence            999999999999999999999999985 4578899998765541     3455555665555666667788889999999


Q ss_pred             eecHHHHHHhhhcccCcccchhhHHHH
Q psy3650         364 LYKKQVLENLVSSCVSKGYVFQMEMVI  390 (435)
Q Consensus       364 ~~~r~~~~~~~~~~~~~~~~~D~el~l  390 (435)
                      +|+|+++++++++.+...|..+.+..+
T Consensus       153 ~~~r~~~~~i~~~d~~~~~~~~~~~~~  179 (181)
T cd04187         153 LMDRKVVDALLLLPERHRFLRGLIAWV  179 (181)
T ss_pred             EEcHHHHHHHHhcCCCCccHHHHHHHh
Confidence            999999999998888888876655543

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.93  E-value=4.6e-24  Score=188.78  Aligned_cols=200  Identities=19%  Similarity=0.197  Sum_probs=145.1

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC--CCCCHHHHHHH
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--KKLGLGTAYMH  279 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~--~n~g~~~a~n~  279 (435)
                      ||||+||+.+.++++|+++.+   |.+++  +|||||||||+|+|.+.++ +....+..++.++..+  .+.|++.++|.
T Consensus         1 viip~~n~~~~l~~~l~sl~~---q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~   76 (229)
T cd04192           1 VVIAARNEAENLPRLLQSLSA---LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTT   76 (229)
T ss_pred             CEEEecCcHHHHHHHHHHHHh---CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHH
Confidence            689999999999999998865   55666  9999999999999999887 4444444466666554  57899999999


Q ss_pred             HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHH--HHHHhcCCCccc
Q psy3650         280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY--LTQLLLRPGVSD  357 (435)
Q Consensus       280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  357 (435)
                      |++.+++||++++|+|+.++|++|++++..+.+++.++++|........... .....+.......  ......+.. ..
T Consensus        77 g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~  154 (229)
T cd04192          77 AIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLL-AKFQRLDWLSLLGLIAGSFGLGKP-FM  154 (229)
T ss_pred             HHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHH-HHHHHHHHHHHHHHHhhHHHhcCc-cc
Confidence            9999999999999999999999999999988877888888876554222100 0111111100000  111111222 23


Q ss_pred             cccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCC-cEEEee--eEEeec
Q psy3650         358 LTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNY-TIGEVP--ISFVDR  409 (435)
Q Consensus       358 ~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~-~i~~~p--~~~~~~  409 (435)
                      ..|++++++|++++++|++.+. ....+|.++++|+..+|+ ++.+++  ....++
T Consensus       155 ~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~  210 (229)
T cd04192         155 CNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTT  210 (229)
T ss_pred             cccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheec
Confidence            4577789999999999876543 455689999999999999 888774  444443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK10073 putative glycosyl transferase; Provisional

Probab=99.92  E-value=8.3e-24  Score=195.15  Aligned_cols=206  Identities=18%  Similarity=0.267  Sum_probs=149.5

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      .|.+|||||+||+++.++++|+++..   |++.++|||||||||+|+|.++++++.++++.  +.++. .+|.|.+.|+|
T Consensus         5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~---Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~--i~vi~-~~n~G~~~arN   78 (328)
T PRK10073          5 TPKLSIIIPLYNAGKDFRAFMESLIA---QTWTALEIIIVNDGSTDNSVEIAKHYAENYPH--VRLLH-QANAGVSVARN   78 (328)
T ss_pred             CCeEEEEEeccCCHHHHHHHHHHHHh---CCCCCeEEEEEeCCCCccHHHHHHHHHhhCCC--EEEEE-CCCCChHHHHH
Confidence            58899999999999999999988865   77789999999999999999999999888775  44554 45999999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeE--ECCCceeccchh--HHHHH----HHHHHHHHHh
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY--VGTGGVYGWDFK--RKLVS----RGANYLTQLL  350 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~--~~~~~----~~~~~~~~~~  350 (435)
                      .|++.|+||||+|+|+|+.+.|+.++.+++.+.+++.+++.+...  ..++... .+..  .....    ....++....
T Consensus        79 ~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l  157 (328)
T PRK10073         79 TGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTGET-WQSIPSDRLRSTGVLSGPDWLRMAL  157 (328)
T ss_pred             HHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEEeCCCcc-ccccccccccccceechHHHHHHHH
Confidence            999999999999999999999999999999988778888876432  2221110 0000  00000    0112222222


Q ss_pred             cCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEE-eecccc
Q psy3650         351 LRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISF-VDRVYG  412 (435)
Q Consensus       351 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~-~~~~~~  412 (435)
                      ....+... ..+.+++|+++++.+.........+|.++..++...+.++.++|... .++.++
T Consensus       158 ~~~~~~~~-~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~ly~Yr~~~  219 (328)
T PRK10073        158 SSRRWTHV-VWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSLYKYYLHD  219 (328)
T ss_pred             hhCCCCcc-HhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECCCEEEEEecC
Confidence            22222222 23468999999998642223333589999999999999999999643 344333

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=99.92  E-value=5.8e-24  Score=213.15  Aligned_cols=226  Identities=17%  Similarity=0.204  Sum_probs=158.6

Q ss_pred             CCCcceEEEEeccCCCCC-hHHHHHHHHHHhhcCCC--CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCC-CCC
Q psy3650         197 SVKNKYTVLLPTYNEKEN-LPIIVYLITKYMDEGNY--PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-KLG  272 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~-l~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~-n~g  272 (435)
                      ...|+++|+||+|||+.. +++++.++.   .+.++  ++||+|+||||+|++.+.++++       .+.++..++ +.|
T Consensus       257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l---~~dYP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n~~g  326 (852)
T PRK11498        257 SLWPTVDIFVPTYNEDLNVVKNTIYASL---GIDWPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTHEHA  326 (852)
T ss_pred             CCCCcEEEEEecCCCcHHHHHHHHHHHH---hccCCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCCCcc
Confidence            346899999999999864 456665554   34444  5899999999999998887764       344444444 446


Q ss_pred             HHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCceeccch--hHHHHH---HHHHHH
Q psy3650         273 LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDF--KRKLVS---RGANYL  346 (435)
Q Consensus       273 ~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~  346 (435)
                      |+.|+|.|++.++||||+++|+|..+.++++.+++..+ ++++.++|.++....+.+......  .+...+   .+....
T Consensus       327 KAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~i  406 (852)
T PRK11498        327 KAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLV  406 (852)
T ss_pred             hHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHH
Confidence            99999999999999999999999999999999999875 567788888766544322111110  111111   111111


Q ss_pred             HHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHH
Q psy3650         347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFA  425 (435)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~  425 (435)
                      .............|+|.++||++++++|+.... ...||+|+++|++++|+++.++|..........+-.. .++..|++
T Consensus       407 q~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~-titED~dlslRL~~~Gyrv~yl~~~~a~glaPesl~~~~~QR~RWa  485 (852)
T PRK11498        407 QDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE-TVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWA  485 (852)
T ss_pred             HhHHHhhcccccccceeeeEHHHHHHhcCCCCC-ccCccHHHHHHHHHcCCEEEEEeccceeEECCCCHHHHHHHHHHHH
Confidence            111111122345788899999999999886543 5789999999999999999999865554433333333 46788888


Q ss_pred             HHHHHHhh
Q psy3650         426 KALLYLFA  433 (435)
Q Consensus       426 ~~~~~~f~  433 (435)
                      .+.++.|.
T Consensus       486 rG~lQi~r  493 (852)
T PRK11498        486 RGMVQIFR  493 (852)
T ss_pred             HHHHHHHH
Confidence            88887765

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=99.92  E-value=2.6e-24  Score=186.32  Aligned_cols=198  Identities=22%  Similarity=0.282  Sum_probs=146.9

Q ss_pred             EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      |||||+||+++.++++|.++.+   |..+++|||||||+|+|++.++++++...    .+ .+...+|.|++.++|.|++
T Consensus         1 sivi~~~n~~~~l~~~l~sl~~---q~~~~~evivvDd~s~d~~~~~~~~~~~~----~~-~~~~~~~~g~~~a~n~~~~   72 (202)
T cd06433           1 SIITPTYNQAETLEETIDSVLS---QTYPNIEYIVIDGGSTDGTVDIIKKYEDK----IT-YWISEPDKGIYDAMNKGIA   72 (202)
T ss_pred             CEEEeccchHHHHHHHHHHHHh---CCCCCceEEEEeCCCCccHHHHHHHhHhh----cE-EEEecCCcCHHHHHHHHHH
Confidence            6899999999999999988865   66677999999999999999999887553    22 3335678999999999999


Q ss_pred             hccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccc
Q psy3650         283 YATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGS  361 (435)
Q Consensus       283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
                      .|++||++++|+|+.+.++++..++..+ ..++.+++.|................    . ......... .. ....++
T Consensus        73 ~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~-~~~~~~~~~-~~-~~~~~~  145 (202)
T cd06433          73 LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR----P-PPFLDKFLL-YG-MPICHQ  145 (202)
T ss_pred             HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC----C-cchhhhHHh-hc-CcccCc
Confidence            9999999999999999999999999554 45678889887765432211111111    0 000111111 11 123344


Q ss_pred             eeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEee-ccccccc
Q psy3650         362 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD-RVYGESK  415 (435)
Q Consensus       362 ~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~-~~~~~s~  415 (435)
                      +++++|+++++++++.+...+.+|.|+++|+.+.|+++.++|....+ +.++.|.
T Consensus       146 ~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~~~~~~~~~s~  200 (202)
T cd06433         146 ATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVLAAFRLGGVSS  200 (202)
T ss_pred             ceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecchhhhhheecCCcC
Confidence            57899999999986555556678999999999999999999987654 4544443

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=99.92  E-value=9.5e-24  Score=186.09  Aligned_cols=180  Identities=53%  Similarity=0.884  Sum_probs=148.2

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ   85 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~   85 (435)
                      .++|||||||||+|+|.++++++.+.++.  +.++..+.|.|++.|+|.|++.|+||||+++|+|+.++|++++.+++.+
T Consensus        26 ~~~eiiiVDd~S~d~t~~~~~~~~~~~~~--i~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~  103 (224)
T cd06442          26 IDYEIIVVDDNSPDGTAEIVRELAKEYPR--VRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLEAQ  103 (224)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHhCCc--eEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            56999999999999999999999887765  4445578899999999999999999999999999999999999999998


Q ss_pred             hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHH
Q psy3650          86 QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVI  165 (435)
Q Consensus        86 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~  165 (435)
                      .+++.++|+|.+.........+.+.++................+..+..+++.+++|+++++++......++.+++|++.
T Consensus       104 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~  183 (224)
T cd06442         104 LEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLV  183 (224)
T ss_pred             hcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHH
Confidence            77888999998876655544555555555544444444445667788889999999999999973344567778899999


Q ss_pred             HHHhhcceeEeeeeEeeecccc
Q psy3650         166 RARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       166 r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      |+.+.|+++..+|..+..|..+
T Consensus       184 ~~~~~g~~i~~~p~~~~~~~~g  205 (224)
T cd06442         184 RARRLGYRIVEVPITFVDREHG  205 (224)
T ss_pred             HHHHcCCeEEEeCeEEeccCCC
Confidence            9999999999999887776644

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=99.92  E-value=3.3e-24  Score=190.47  Aligned_cols=215  Identities=19%  Similarity=0.207  Sum_probs=153.5

Q ss_pred             ceEEEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650         201 KYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH  279 (435)
Q Consensus       201 ~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~  279 (435)
                      .||||||+||+. +.+.++++++.+   |.  ++|||||||+|+|++.+.+++.. ..+  .+.++ ..++.|++.|+|.
T Consensus         1 ~isVvIp~~ne~~~~l~~~l~sl~~---q~--~~eiivvdd~s~d~~~~~l~~~~-~~~--~~~v~-~~~~~g~~~a~n~   71 (235)
T cd06434           1 DVTVIIPVYDEDPDVFRECLRSILR---QK--PLEIIVVTDGDDEPYLSILSQTV-KYG--GIFVI-TVPHPGKRRALAE   71 (235)
T ss_pred             CeEEEEeecCCChHHHHHHHHHHHh---CC--CCEEEEEeCCCChHHHHHHHhhc-cCC--cEEEE-ecCCCChHHHHHH
Confidence            489999999999 999999998876   43  67999999999999988875432 233  33333 3568899999999


Q ss_pred             HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHH---H--HHHhcCCC
Q psy3650         280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY---L--TQLLLRPG  354 (435)
Q Consensus       280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~  354 (435)
                      |+..+++|||+++|+|+.+++++|++++..+.+++.++|+|.....+...   ..+..........   .  ........
T Consensus        72 g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (235)
T cd06434          72 GIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRD---SKWSFLAAEYLERRNEEIRAAMSYDGG  148 (235)
T ss_pred             HHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcc---cHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999998778888888765544321   1111111111111   1  11112223


Q ss_pred             ccccccceeeecHHHHHHhhhcc---------cCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHH
Q psy3650         355 VSDLTGSFRLYKKQVLENLVSSC---------VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQF  424 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~~~---------~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~  424 (435)
                      ....+|+|++++|+++++++...         +.....+|.+++.++.++|+++.+.|.....+....+-.. +++..|+
T Consensus       149 ~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw  228 (235)
T cd06434         149 VPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKKFLKQQLRW  228 (235)
T ss_pred             EEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEcchhHHHHHHHhhhh
Confidence            44567889999999999875321         1234668999999999999999999976655543333322 3445555


Q ss_pred             HHH
Q psy3650         425 AKA  427 (435)
Q Consensus       425 ~~~  427 (435)
                      ..+
T Consensus       229 ~~~  231 (235)
T cd06434         229 SRS  231 (235)
T ss_pred             hhc
Confidence            543

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=99.92  E-value=4.8e-24  Score=184.67  Aligned_cols=194  Identities=19%  Similarity=0.228  Sum_probs=142.6

Q ss_pred             EEEEeccCCCC--ChHHHHHHHHHHhhcCCCCeEEEEEeCCC-CcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650         203 TVLLPTYNEKE--NLPIIVYLITKYMDEGNYPYEIIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH  279 (435)
Q Consensus       203 sivip~~n~~~--~l~~~l~~l~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~  279 (435)
                      ||+||+||+++  .++++|+++.+   |.+++.||||||||| +|.|.++++++..+++   +.++..++|.|.+.|+|.
T Consensus         1 sviip~~n~~~~~~l~~~l~Sl~~---q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~~a~N~   74 (201)
T cd04195           1 SVLMSVYIKEKPEFLREALESILK---QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLGKALNE   74 (201)
T ss_pred             CEEEEccccchHHHHHHHHHHHHh---cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHHHHHHH
Confidence            69999999874  78888888765   666678999999998 6778888988877654   555667789999999999


Q ss_pred             HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650         280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL  358 (435)
Q Consensus       280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (435)
                      |+..++|||++++|+|+.++|++++.++..+.+ ++.+++.|.............. +... ............  ....
T Consensus        75 g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--~~~~  150 (201)
T cd04195          75 GLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGK-RRLP-TSHDDILKFARR--RSPF  150 (201)
T ss_pred             HHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecc-ccCC-CCHHHHHHHhcc--CCCC
Confidence            999999999999999999999999999999864 4677777765443221110000 0000 001111111111  1123


Q ss_pred             ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEe
Q psy3650         359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFV  407 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~  407 (435)
                      .+++++++|+++++++++... .+.+|+++++|+..+|+++.++|....
T Consensus       151 ~~~~~~~rr~~~~~~g~~~~~-~~~eD~~~~~r~~~~g~~~~~~~~~~~  198 (201)
T cd04195         151 NHPTVMFRKSKVLAVGGYQDL-PLVEDYALWARMLANGARFANLPEILV  198 (201)
T ss_pred             CChHHhhhHHHHHHcCCcCCC-CCchHHHHHHHHHHcCCceecccHHHh
Confidence            455679999999999876544 778999999999999999999986543

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>KOG2977|consensus

Probab=99.91  E-value=2.1e-23  Score=175.93  Aligned_cols=229  Identities=24%  Similarity=0.380  Sum_probs=185.2

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhc-----CCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDE-----GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL  273 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~-----~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~  273 (435)
                      ...+|||||.|||+..+...++...+++++     +...+||+||||||+|.|.+++-++..++..-.++++...+|.|+
T Consensus        66 ~~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgK  145 (323)
T KOG2977|consen   66 KMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGK  145 (323)
T ss_pred             hceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCC
Confidence            347999999999999998777766555543     235799999999999999999999997777668999999999999


Q ss_pred             HHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-----cCCCceEEeeeEECC--CceeccchhHHHHHHHHHHH
Q psy3650         274 GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-----QENLDVVTGTRYVGT--GGVYGWDFKRKLVSRGANYL  346 (435)
Q Consensus       274 ~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  346 (435)
                      |.|...|+..+.|++++|.|+|....-..++.+.+.+.     ....++++|+|..-+  ......++.+.+.-..+..+
T Consensus       146 GgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~l  225 (323)
T KOG2977|consen  146 GGAVRKGMLSSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKL  225 (323)
T ss_pred             CcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHH
Confidence            99999999999999999999999755555666666654     234568888875433  33444566777777777777


Q ss_pred             HHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHH
Q psy3650         347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFA  425 (435)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~  425 (435)
                      .-.....++.|++|||.+|+|.+.+++.......++.+|.|+...+...+..+.++|+.|.+  ...||++ .+..+...
T Consensus       226 v~~~a~rsI~DTQcgfklftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~v~w~E--IdgSKi~~~~s~~~m~  303 (323)
T KOG2977|consen  226 VWIFAIRSIRDTQCGFKLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIPVEWTE--IDGSKITPVWSWLQMG  303 (323)
T ss_pred             HHHHhcCcccccchhHHHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEeeeEEEE--cCCceeehHHHHHHHh
Confidence            77788899999999999999999999987778899999999999999999999999999976  4567777 45555555


Q ss_pred             HHHH
Q psy3650         426 KALL  429 (435)
Q Consensus       426 ~~~~  429 (435)
                      .+++
T Consensus       304 ~dlv  307 (323)
T KOG2977|consen  304 SDLV  307 (323)
T ss_pred             hhhh
Confidence            5443

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=99.91  E-value=2.2e-23  Score=210.73  Aligned_cols=230  Identities=14%  Similarity=0.192  Sum_probs=160.3

Q ss_pred             CCCcceEEEEeccCCCCCh-HHHHHHHHHHhhcCCC--CeEEEEEeCCCCcch--------------HHHHHHHHHHhCC
Q psy3650         197 SVKNKYTVLLPTYNEKENL-PIIVYLITKYMDEGNY--PYEIIVIDDGSPDGT--------------LDAAKQLQSIYGS  259 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l-~~~l~~l~~~~~~~~~--~~eiivvdd~s~d~t--------------~~~~~~~~~~~~~  259 (435)
                      ...|+++|+||+|||+..+ ++++.++..   +.++  ++||+|+||||+|+|              .+.++++.++.  
T Consensus       128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~---~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~--  202 (713)
T TIGR03030       128 EEWPTVDVFIPTYNEDLEIVATTVLAAKN---MDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL--  202 (713)
T ss_pred             ccCCeeEEEEcCCCCCHHHHHHHHHHHHh---CCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc--
Confidence            4568999999999998755 567776543   5555  699999999999987              34566666654  


Q ss_pred             ceEEEecCCCCC-CHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccc--hh
Q psy3650         260 EKIVLKPRKKKL-GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWD--FK  335 (435)
Q Consensus       260 ~~i~~~~~~~n~-g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~--~~  335 (435)
                       .+.++..++|. +|+.|+|.|++.++|||++++|+|..++|++|.+++..+. +++.++|.++....+.......  ..
T Consensus       203 -~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~  281 (713)
T TIGR03030       203 -GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTF  281 (713)
T ss_pred             -CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHH
Confidence             34445455554 5899999999999999999999999999999999999985 5677777776554432211111  01


Q ss_pred             HHHHH---HHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         336 RKLVS---RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       336 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                      ....+   .+...........+.....|++.++||++++++|+... ....||+++++|++++|+++.++|....+....
T Consensus       282 ~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~-~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p  360 (713)
T TIGR03030       282 RRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG-ETVTEDAETALKLHRRGWNSAYLDRPLIAGLAP  360 (713)
T ss_pred             HHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC-CCcCcHHHHHHHHHHcCCeEEEeccccccccCC
Confidence            11111   11111111111112234567788999999999987653 456899999999999999999999777665433


Q ss_pred             cccCC-HHHHHHHHHHHHHHhh
Q psy3650         413 ESKLG-GTEIFQFAKALLYLFA  433 (435)
Q Consensus       413 ~s~~~-~~~~~~~~~~~~~~f~  433 (435)
                      .+-.. .++..|+....++.|.
T Consensus       361 ~sl~~~~~Qr~RWa~G~~qi~~  382 (713)
T TIGR03030       361 ETLSGHIGQRIRWAQGMMQIFR  382 (713)
T ss_pred             CCHHHHHHHHHHHhcChHHHHh
Confidence            33333 5677888877777654

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.91  E-value=1.4e-23  Score=181.78  Aligned_cols=172  Identities=22%  Similarity=0.234  Sum_probs=142.8

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      ||||+||++..++++++++.+   |+++..||||+||||+|+|.++++++....+   +.++..++|.|.+.++|.|++.
T Consensus         1 viI~~~n~~~~l~~~l~sl~~---q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n~~~~~   74 (202)
T cd04185           1 AVVVTYNRLDLLKECLDALLA---QTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFYEGVRR   74 (202)
T ss_pred             CEEEeeCCHHHHHHHHHHHHh---ccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHHHHHHH
Confidence            689999999999999999865   5666789999999999999999998866543   6667678899999999999997


Q ss_pred             c---cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccc
Q psy3650         284 A---TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTG  360 (435)
Q Consensus       284 a---~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (435)
                      +   ++||++++|+|+.++++++.++++.+.+++.+++.+.+...++                               .+
T Consensus        75 a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~  123 (202)
T cd04185          75 AYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SF  123 (202)
T ss_pred             HhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ce
Confidence            6   6899999999999999999999999987778877776655432                               23


Q ss_pred             ceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeeccccc
Q psy3650         361 SFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGE  413 (435)
Q Consensus       361 ~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~  413 (435)
                      ++++++|++++++++.... ..+++|.+++.|+.++|+++ ++|-....|..+.
T Consensus       124 ~~~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~  176 (202)
T cd04185         124 VGVLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAI  176 (202)
T ss_pred             EEEEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEcccc
Confidence            4479999999999764433 45679999999999999999 9887776665554

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.91  E-value=6.3e-24  Score=185.80  Aligned_cols=205  Identities=20%  Similarity=0.215  Sum_probs=148.3

Q ss_pred             EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      |||||+||+...++++|+++.+   |.++++|||||||||+|+|.++++++..++| ..+.++..++|.|.+.++|.|+.
T Consensus         1 sIvIp~yn~~~~l~~~l~sl~~---q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~n~g~~   76 (214)
T cd04196           1 AVLMATYNGEKYLREQLDSILA---QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNFESLLQ   76 (214)
T ss_pred             CEEEEecCcHHHHHHHHHHHHh---CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHHHHHHH
Confidence            6899999999999999988865   5666899999999999999999999988876 35666778889999999999999


Q ss_pred             hccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCc--eeccchhHHHHHHHHHHHHHHhcCCCccccc
Q psy3650         283 YATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGG--VYGWDFKRKLVSRGANYLTQLLLRPGVSDLT  359 (435)
Q Consensus       283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (435)
                      .+++|||+++|+|+.+.|++|..+++.+ ..+..+++.+........  ........................   ....
T Consensus        77 ~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  153 (214)
T cd04196          77 AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQ---NVVT  153 (214)
T ss_pred             hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHh---CccC
Confidence            9999999999999999999999999984 455566666655432221  111111111100000011111111   1235


Q ss_pred             cceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEE-eeccccccc
Q psy3650         360 GSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISF-VDRVYGESK  415 (435)
Q Consensus       360 ~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~-~~~~~~~s~  415 (435)
                      |++++++|++++++++......+.+|.++..++.. |.++.++|... .++.++.|.
T Consensus       154 ~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~  209 (214)
T cd04196         154 GCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLDEPLILYRQHGNNV  209 (214)
T ss_pred             CceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcchhHHHHhcccccc
Confidence            66789999999999765555467789888888777 66888888654 445555544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=99.91  E-value=1.4e-23  Score=192.70  Aligned_cols=211  Identities=23%  Similarity=0.317  Sum_probs=161.0

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      ++++++||++||..+.+.+++.++.+   +.++..++++|||+|+|.+.+.+++..  .|  .+.++.+++|.|.+.+.|
T Consensus         2 ~~~i~~iiv~yn~~~~l~~~l~~l~~---~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~agg~n   74 (305)
T COG1216           2 MPKISIIIVTYNRGEDLVECLASLAA---QTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGFAGGFN   74 (305)
T ss_pred             CcceEEEEEecCCHHHHHHHHHHHhc---CCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccchhhhh
Confidence            68899999999999999888888765   666677778999999999998877632  34  577777899999999999


Q ss_pred             HHHhhccCC---EEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHH-HHHhc---
Q psy3650         279 HGLKYATGN---FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL-TQLLL---  351 (435)
Q Consensus       279 ~g~~~a~~d---~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---  351 (435)
                      .|++.|.++   |++++|+|..+++++|++|++.+++.+...+.|......+................... .....   
T Consensus        75 ~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (305)
T COG1216          75 RGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIA  154 (305)
T ss_pred             HHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccccc
Confidence            999999654   99999999999999999999999988888888888776543211111110000000000 00000   


Q ss_pred             -----CCCcc-ccccceeeecHHHHHHhhhccc-CcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC
Q psy3650         352 -----RPGVS-DLTGSFRLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL  416 (435)
Q Consensus       352 -----~~~~~-~~~~~~~~~~r~~~~~~~~~~~-~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~  416 (435)
                           ..... ..+|+|+++++++|+++|+..+ .+.|.+|+|+|+|+.++|+++.++|...+.|..|.|..
T Consensus       155 ~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~~  226 (305)
T COG1216         155 PDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSKG  226 (305)
T ss_pred             ccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCCC
Confidence                 00111 3789999999999999987544 46777999999999999999999999998888887764

>PRK10018 putative glycosyl transferase; Provisional

Probab=99.91  E-value=8.7e-23  Score=183.01  Aligned_cols=202  Identities=14%  Similarity=0.168  Sum_probs=138.9

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..|.||||||+||+++.+.++++++.+   |+++++|||||||||++  .+.++++.......++.++.++.|.|.+.|+
T Consensus         3 ~~p~VSVIip~yN~~~~l~~~l~Svl~---Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~   77 (279)
T PRK10018          3 DNPLISIYMPTWNRQQLAIRAIKSVLR---QDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGACAVR   77 (279)
T ss_pred             CCCEEEEEEEeCCCHHHHHHHHHHHHh---CCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence            368899999999999999888887754   77889999999999984  4556666655444478888888999999999


Q ss_pred             HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchh-HHHHHHHHHHHHHHhcCCCc
Q psy3650         278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFK-RKLVSRGANYLTQLLLRPGV  355 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  355 (435)
                      |.|++.|+|+||+++|+|+...|+.|..++..+.+ ...+++.+......+.....+.. .......  +.....+... 
T Consensus        78 N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~n-  154 (279)
T PRK10018         78 NQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSP--YSRRLFYKRN-  154 (279)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecCcccccccccCCCCCCC--CCHHHHHHhc-
Confidence            99999999999999999999999999999998865 45566666543222211111000 0000000  0000111111 


Q ss_pred             cccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE-Eeecc
Q psy3650         356 SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS-FVDRV  410 (435)
Q Consensus       356 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~-~~~~~  410 (435)
                        ..|...++.+..+...+ +.+.....+|+||++|+...|.+...+|.. ..+|.
T Consensus       155 --~ig~~~~~~~~~~~~~~-fd~~~~~~eDydlwlrl~~~~~~~~~~~~~l~~y~~  207 (279)
T PRK10018        155 --IIGNQVFTWAWRFKECL-FDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHI  207 (279)
T ss_pred             --CcCceeeehhhhhhhcc-cCCCCCccccHHHHHHHHHhcCceEeeccceEEEEc
Confidence              12233355555555443 445566789999999999999888888764 34444

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=99.90  E-value=2.1e-22  Score=177.05  Aligned_cols=193  Identities=22%  Similarity=0.273  Sum_probs=137.1

Q ss_pred             eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHH
Q psy3650         202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGL  281 (435)
Q Consensus       202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~  281 (435)
                      +||+||+||+++.+.++|+++..   |.+.++||+||||+|+|++.+.+++     +  .+.++..  +.|++.++|.|+
T Consensus         1 vsvii~~~n~~~~l~~~l~sl~~---q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~~~--~~g~~~a~n~g~   68 (221)
T cd02522           1 LSIIIPTLNEAENLPRLLASLRR---LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVISS--PKGRARQMNAGA   68 (221)
T ss_pred             CEEEEEccCcHHHHHHHHHHHHh---ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEEeC--CcCHHHHHHHHH
Confidence            68999999999999999998865   5557899999999999999888766     2  3445433  678999999999


Q ss_pred             hhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccc
Q psy3650         282 KYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGS  361 (435)
Q Consensus       282 ~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (435)
                      +.+++++++++|+|+.++++++++++..+..++..++.......+...    ..+.. .. ..........   ....++
T Consensus        69 ~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~-~~~~~~~~~~---~~~~~~  139 (221)
T cd02522          69 AAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGP----RLRLL-EL-GANLRSRLFG---LPYGDQ  139 (221)
T ss_pred             HhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCcc----chhhh-hh-cccceecccC---CCcCCc
Confidence            999999999999999999999999988776555444333333333221    11110 00 0000000111   112345


Q ss_pred             eeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC
Q psy3650         362 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG  417 (435)
Q Consensus       362 ~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~  417 (435)
                      +++++|++++++|++.+.. +.+|+|+++|+.++|+++.. |...+.......+.+
T Consensus       140 ~~~~r~~~~~~~G~fd~~~-~~ED~d~~~r~~~~G~~~~~-~~~~~~~~~~~~~~~  193 (221)
T cd02522         140 GLFIRRELFEELGGFPELP-LMEDVELVRRLRRRGRPALL-PSPVTTSARRWERNG  193 (221)
T ss_pred             eEEEEHHHHHHhCCCCccc-cccHHHHHHHHHhCCCEEEc-CceeeecccccccCC
Confidence            6899999999998876666 88999999999999999877 655544433333333

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK14716 bacteriophage N4 adsorption protein B; Provisional

Probab=99.90  E-value=5e-22  Score=190.17  Aligned_cols=228  Identities=14%  Similarity=0.092  Sum_probs=162.3

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..|+++|+||+|||++.+.++++++...  +.|+++||+|++|+|+|+|.+.++++.+++|++++++.+.+...||+.|+
T Consensus        64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~--ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aL  141 (504)
T PRK14716         64 PEKRIAIFVPAWREADVIGRMLEHNLAT--LDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCL  141 (504)
T ss_pred             CCCceEEEEeccCchhHHHHHHHHHHHc--CCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHH
Confidence            3789999999999999999999886443  34688999999999999999999999999998776666665566799999


Q ss_pred             HHHHhhc------cC---CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhH-HHHHHHHHH--
Q psy3650         278 MHGLKYA------TG---NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR-KLVSRGANY--  345 (435)
Q Consensus       278 n~g~~~a------~~---d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~--  345 (435)
                      |.|++.+      +|   |+++++|+|+.++|+.+..+...+.  +.+++..+....+....  .+.. .....+...  
T Consensus       142 N~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~--~~~~VQ~pv~~~~~~~~--~~~ag~y~~ef~~~~~  217 (504)
T PRK14716        142 NWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP--RHDFVQLPVFSLPRDWG--EWVAGTYMDEFAESHL  217 (504)
T ss_pred             HHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC--CCCEEecceeccCCchh--HHHHHHHHHHHHHHHH
Confidence            9999764      45   9999999999999999998766653  45666654433221100  1111 111111111  


Q ss_pred             ---HHHHhcCCCccccccceeeecHHHHHHh----hhc-ccCcccchhhHHHHHHHHCCCcEEEeeeEEee--------c
Q psy3650         346 ---LTQLLLRPGVSDLTGSFRLYKKQVLENL----VSS-CVSKGYVFQMEMVIRARQYNYTIGEVPISFVD--------R  409 (435)
Q Consensus       346 ---~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~-~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~--------~  409 (435)
                         ..+..++.. ....|.+++|+|++++++    ++. ...+...||+|+.+|+..+|+++.++|.+..+        +
T Consensus       218 ~~l~~r~~LG~~-~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~  296 (504)
T PRK14716        218 KDLPVREALGGL-IPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRG  296 (504)
T ss_pred             HHHHHHHhcCCc-cccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccc
Confidence               111222222 234577789999999998    232 34567889999999999999999999987432        1


Q ss_pred             --------ccccccCCHHHHHHHHHHH-HHHh
Q psy3650         410 --------VYGESKLGGTEIFQFAKAL-LYLF  432 (435)
Q Consensus       410 --------~~~~s~~~~~~~~~~~~~~-~~~f  432 (435)
                              .+.+-+-.+++..|+...+ ++.+
T Consensus       297 ~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~  328 (504)
T PRK14716        297 EPIATREFFPDTFKAAVRQKARWIYGIAFQGW  328 (504)
T ss_pred             ccccccccCccCHHHHHHHHHHHHhchHHhhH
Confidence                    1122233478899999886 5544

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.90  E-value=1.1e-22  Score=197.88  Aligned_cols=228  Identities=23%  Similarity=0.309  Sum_probs=171.9

Q ss_pred             CcceEEEEeccCCCC-ChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC-CceEEEecCCCCCCHHHH
Q psy3650         199 KNKYTVLLPTYNEKE-NLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG-SEKIVLKPRKKKLGLGTA  276 (435)
Q Consensus       199 ~~~isivip~~n~~~-~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~~~~~~~n~g~~~a  276 (435)
                      .|+++|+||+|||+. .+++++.++.+   +.++.+||++|||+|+|++.+++++...+++ .+++... ..++.||+.|
T Consensus        53 ~p~vsviiP~ynE~~~~~~~~l~s~~~---~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~a  128 (439)
T COG1215          53 LPKVSVIIPAYNEEPEVLEETLESLLS---QDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGA  128 (439)
T ss_pred             CCceEEEEecCCCchhhHHHHHHHHHh---CCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHH
Confidence            589999999999999 88998888755   7888899999999999999999999998873 4444421 2568899999


Q ss_pred             HHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHH---HHHH-HHHHHH-Hhc
Q psy3650         277 YMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL---VSRG-ANYLTQ-LLL  351 (435)
Q Consensus       277 ~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~-~~~  351 (435)
                      +|.|+..+++|+|+++|+|..++|++|.+++..+.+++..++++.....+.... ..+....   .... ...... ...
T Consensus       129 l~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~  207 (439)
T COG1215         129 LNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDP-SNLLGRIQAIEYLSAFYFRLRAASK  207 (439)
T ss_pred             HHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCCh-hhhcchhcchhhhhhHHHhhhhhhh
Confidence            999999999999999999999999999999999987776656665544432100 0111111   1111 111111 111


Q ss_pred             CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHHHHH
Q psy3650         352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKALLY  430 (435)
Q Consensus       352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~  430 (435)
                      ......++|++.+++|++++++|+ ......+||.+++.++..+|+++.++|-.......-.+-.. +++..|++.+.++
T Consensus       208 ~g~~~~~~G~~~~~rr~aL~~~g~-~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g~~~  286 (439)
T COG1215         208 GGLISFLSGSSSAFRRSALEEVGG-WLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARGGLQ  286 (439)
T ss_pred             cCCeEEEcceeeeEEHHHHHHhCC-CCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHHHcccce
Confidence            123556789999999999999974 45667789999999999999999999988666554444443 6778888887766


Q ss_pred             Hh
Q psy3650         431 LF  432 (435)
Q Consensus       431 ~f  432 (435)
                      .+
T Consensus       287 ~~  288 (439)
T COG1215         287 VL  288 (439)
T ss_pred             ee
Confidence            54

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=99.90  E-value=2.8e-22  Score=170.67  Aligned_cols=177  Identities=20%  Similarity=0.302  Sum_probs=136.4

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      ||||+||+.+.++++|+++.+   |.+.++||||+||+|+|+|.++++++....+...+.+...+.+.|++.++|.|++.
T Consensus         1 ivip~~n~~~~l~~~l~sl~~---q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~   77 (182)
T cd06420           1 LIITTYNRPEALELVLKSVLN---QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAA   77 (182)
T ss_pred             CEEeecCChHHHHHHHHHHHh---ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHH
Confidence            689999999999999998876   55678999999999999999999988765443233444455566889999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR  363 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
                      |+++|++++|+|+.+++++|..+++.+ + +...+.|.+.........                        ....|+++
T Consensus        78 a~g~~i~~lD~D~~~~~~~l~~~~~~~-~-~~~~v~g~~~~~~~~~~~------------------------~~~~~~~~  131 (182)
T cd06420          78 AKGDYLIFIDGDCIPHPDFIADHIELA-E-PGVFLSGSRVLLNEKLTE------------------------RGIRGCNM  131 (182)
T ss_pred             hcCCEEEEEcCCcccCHHHHHHHHHHh-C-CCcEEecceeecccccce------------------------eEeccceE
Confidence            999999999999999999999999988 3 345566666554332110                        33456667


Q ss_pred             eecHHHHHHhhhcccCc-cc-chhhHHHHHHHHCCCcEEEee-eEEeec
Q psy3650         364 LYKKQVLENLVSSCVSK-GY-VFQMEMVIRARQYNYTIGEVP-ISFVDR  409 (435)
Q Consensus       364 ~~~r~~~~~~~~~~~~~-~~-~~D~el~lr~~~~G~~i~~~p-~~~~~~  409 (435)
                      +++|+.+.+++++.+.. .+ .+|+|+++|+.++|++...+. -...+|
T Consensus       132 ~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h  180 (182)
T cd06420         132 SFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFH  180 (182)
T ss_pred             EEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeee
Confidence            88999999997765443 22 589999999999997766654 444444

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=99.90  E-value=2.7e-23  Score=184.82  Aligned_cols=203  Identities=20%  Similarity=0.185  Sum_probs=139.4

Q ss_pred             EEEeccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         204 VLLPTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       204 ivip~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      +|||+||+. +.+.++|+++.+   |   ..|||||||+|+|.+....+.   .  ...+.++..++|.|++.|+|.|++
T Consensus         1 ~vI~~yn~~~~~l~~~l~sl~~---q---~~~iivvDn~s~~~~~~~~~~---~--~~~i~~i~~~~n~G~~~a~N~g~~   69 (237)
T cd02526           1 AVVVTYNPDLSKLKELLAALAE---Q---VDKVVVVDNSSGNDIELRLRL---N--SEKIELIHLGENLGIAKALNIGIK   69 (237)
T ss_pred             CEEEEecCCHHHHHHHHHHHhc---c---CCEEEEEeCCCCccHHHHhhc---c--CCcEEEEECCCceehHHhhhHHHH
Confidence            589999999 999999998865   3   569999999998877655433   2  225667777889999999999999


Q ss_pred             hccC---CEEEEEeCCCCCCCccHHHHH---HHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650         283 YATG---NFIIIMDADLSHHPKFIPEMI---KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVS  356 (435)
Q Consensus       283 ~a~~---d~v~~~d~D~~~~~~~l~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
                      .|++   ||++++|+|+.++|++|.+++   ..+...+...+.++...................................
T Consensus        70 ~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (237)
T cd02526          70 AALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVD  149 (237)
T ss_pred             HHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEee
Confidence            9987   999999999999999999995   4444444444555554432221111000000000000000000001112


Q ss_pred             ccccceeeecHHHHHHhhhcccCc-ccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC
Q psy3650         357 DLTGSFRLYKKQVLENLVSSCVSK-GYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG  417 (435)
Q Consensus       357 ~~~~~~~~~~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~  417 (435)
                      ...+++++++|+++++++++.+.. ..++|+|+++|+.++|+++.++|...++|..+.++..
T Consensus       150 ~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~~~~  211 (237)
T cd02526         150 FLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDKRVK  211 (237)
T ss_pred             eeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEecccCcchh
Confidence            234556799999999998765443 2357999999999999999999999988887877543

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.89  E-value=4.1e-22  Score=166.89  Aligned_cols=164  Identities=22%  Similarity=0.420  Sum_probs=136.8

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      |+||+||+...+.++++++.+   |..+.+||+|+||||++++.+.+++...     ++.++..++|.|++.|+|.|++.
T Consensus         1 vii~~~~~~~~l~~~l~sl~~---~~~~~~~iiivdd~s~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~a~n~~~~~   72 (166)
T cd04186           1 IIIVNYNSLEYLKACLDSLLA---QTYPDFEVIVVDNASTDGSVELLRELFP-----EVRLIRNGENLGFGAGNNQGIRE   72 (166)
T ss_pred             CEEEecCCHHHHHHHHHHHHh---ccCCCeEEEEEECCCCchHHHHHHHhCC-----CeEEEecCCCcChHHHhhHHHhh
Confidence            689999999999999999876   4446889999999999999888876522     46666677899999999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccccccee
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR  363 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
                      +.+++++++|+|+.++++++..+++.+.+.+...+++.+                                   ..|+++
T Consensus        73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~  117 (166)
T cd04186          73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-----------------------------------VSGAFL  117 (166)
T ss_pred             CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------------CceeeE
Confidence            999999999999999999999999977654433333433                                   678889


Q ss_pred             eecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeecc
Q psy3650         364 LYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRV  410 (435)
Q Consensus       364 ~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~  410 (435)
                      +++++++++++++... ..+.+|.++.+|+..+|+++.++|...+.|.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~  165 (166)
T cd04186         118 LVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH  165 (166)
T ss_pred             eeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence            9999999999765443 2367899999999999999999998876654

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=99.89  E-value=2.9e-21  Score=170.92  Aligned_cols=225  Identities=10%  Similarity=0.077  Sum_probs=154.5

Q ss_pred             eEEEEeccCCCCC-hHHHHHHHHHHhh-cCC-CCeEEEEEeCCCCcchHH----HHHHHHHHhC-CceEEEecCCCCCC-
Q psy3650         202 YTVLLPTYNEKEN-LPIIVYLITKYMD-EGN-YPYEIIVIDDGSPDGTLD----AAKQLQSIYG-SEKIVLKPRKKKLG-  272 (435)
Q Consensus       202 isivip~~n~~~~-l~~~l~~l~~~~~-~~~-~~~eiivvdd~s~d~t~~----~~~~~~~~~~-~~~i~~~~~~~n~g-  272 (435)
                      +||+||+||++.. +..+|.++.+.+. +.+ +.+||+++||++++....    .+.+++++++ ..++++...++|.| 
T Consensus         1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~   80 (254)
T cd04191           1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGR   80 (254)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCc
Confidence            6999999999986 7777777665443 333 689999999998765432    2333554443 44677777777877 


Q ss_pred             HHHHHHHHHhh--ccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHH---HH-H
Q psy3650         273 LGTAYMHGLKY--ATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRG---AN-Y  345 (435)
Q Consensus       273 ~~~a~n~g~~~--a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~-~  345 (435)
                      |+.++|.++..  +++|||+++|+|..++|++|.+++.++. +++.++|+++....+..    +++.++....   +. .
T Consensus        81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~----~~~~~~~~~~~~~~~~~  156 (254)
T cd04191          81 KAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE----TLFARLQQFANRLYGPV  156 (254)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCC----CHHHHHHHHHHHHHHHH
Confidence            67888888876  6789999999999999999999999996 78889998877665543    2333332211   11 1


Q ss_pred             HHH--HhcCCCccccccceeeecHHHHHHhhhcc-------c-CcccchhhHHHHHHHHCCCcEEEeeeEEe-ecccccc
Q psy3650         346 LTQ--LLLRPGVSDLTGSFRLYKKQVLENLVSSC-------V-SKGYVFQMEMVIRARQYNYTIGEVPISFV-DRVYGES  414 (435)
Q Consensus       346 ~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-------~-~~~~~~D~el~lr~~~~G~~i~~~p~~~~-~~~~~~s  414 (435)
                      +..  ...........|..+++||++|+++++..       + .....+|+++.+++..+|+++.+.|.... ......+
T Consensus       157 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~~p~~  236 (254)
T cd04191         157 FGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEECPPT  236 (254)
T ss_pred             HHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeECCCC
Confidence            111  11112234556888999999999964322       2 34567999999999999999999997653 3222222


Q ss_pred             -cCCHHHHHHHHHHHHH
Q psy3650         415 -KLGGTEIFQFAKALLY  430 (435)
Q Consensus       415 -~~~~~~~~~~~~~~~~  430 (435)
                       +--+++..||....++
T Consensus       237 ~~~~~~qr~RW~~G~~q  253 (254)
T cd04191         237 LIDFLKRDRRWCQGNLQ  253 (254)
T ss_pred             HHHHHHHHHHHHhhcCc
Confidence             2236777888776543

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.88  E-value=1.7e-22  Score=169.38  Aligned_cols=167  Identities=27%  Similarity=0.362  Sum_probs=127.2

Q ss_pred             EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      |||||+||+.+.+.++|+++.++   ...+.|||||||||+|++.++++++.+  ....+.++..++|.|.+.++|.|++
T Consensus         1 Svvip~~n~~~~l~~~l~sl~~q---~~~~~eiivvdd~s~d~~~~~~~~~~~--~~~~i~~i~~~~n~g~~~~~n~~~~   75 (169)
T PF00535_consen    1 SVVIPTYNEAEYLERTLESLLKQ---TDPDFEIIVVDDGSTDETEEILEEYAE--SDPNIRYIRNPENLGFSAARNRGIK   75 (169)
T ss_dssp             EEEEEESS-TTTHHHHHHHHHHH---SGCEEEEEEEECS-SSSHHHHHHHHHC--CSTTEEEEEHCCCSHHHHHHHHHHH
T ss_pred             CEEEEeeCCHHHHHHHHHHHhhc---cCCCEEEEEeccccccccccccccccc--ccccccccccccccccccccccccc
Confidence            79999999999999999999875   567899999999999999999999876  2346778888889999999999999


Q ss_pred             hccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccch-hH-HHHHHHHHHHHHHhcCCCcccccc
Q psy3650         283 YATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF-KR-KLVSRGANYLTQLLLRPGVSDLTG  360 (435)
Q Consensus       283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~  360 (435)
                      .|+++|++++|+|+.+++++|..+++.+.+++.+++.+.............. .. .......................+
T Consensus        76 ~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (169)
T PF00535_consen   76 HAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIG  155 (169)
T ss_dssp             H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESS
T ss_pred             ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccc
Confidence            9999999999999999999999999999988888888877665433211111 10 011112222333344455667788


Q ss_pred             ceeeecHHHHHHhh
Q psy3650         361 SFRLYKKQVLENLV  374 (435)
Q Consensus       361 ~~~~~~r~~~~~~~  374 (435)
                      +|++++|++|+++|
T Consensus       156 ~~~~~rr~~~~~~~  169 (169)
T PF00535_consen  156 SCALFRRSVFEEIG  169 (169)
T ss_dssp             SCEEEEEHHHHHCH
T ss_pred             cEEEEEHHHHHhhC
Confidence            89999999999985

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin

Probab=99.87  E-value=5.5e-22  Score=176.43  Aligned_cols=198  Identities=17%  Similarity=0.111  Sum_probs=140.2

Q ss_pred             EEEeccCCC-CChHHHHHHHHHHhhcCCC----------CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC
Q psy3650         204 VLLPTYNEK-ENLPIIVYLITKYMDEGNY----------PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG  272 (435)
Q Consensus       204 ivip~~n~~-~~l~~~l~~l~~~~~~~~~----------~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g  272 (435)
                      |+||+|||+ ..|+++|+++.+   |.++          ++|||||||||+|                        .|.|
T Consensus         1 v~ip~yNE~~~~i~~~l~sv~~---q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~g   53 (244)
T cd04190           1 VCVTMYNEDEEELARTLDSILK---NDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRG   53 (244)
T ss_pred             CEEeeecCCHHHHHHHHHHHHH---hhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCc
Confidence            689999997 789999999865   5555          7999999999999                        2445


Q ss_pred             HHH-------HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHHHH
Q psy3650         273 LGT-------AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN  344 (435)
Q Consensus       273 ~~~-------a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (435)
                      |..       ++|.++..+++||++++|+|+.++|++|.+++..+. ++++++|+|.....+.........+.+-.....
T Consensus        54 k~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~  133 (244)
T cd04190          54 KRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISH  133 (244)
T ss_pred             chHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhh
Confidence            553       567788888999999999999999999999999984 666777888765554321000111111000001


Q ss_pred             H---HHHHhcCCCccccccceeeecHHHHHHhhhcccC-------------------cccchhhHHHHHHHHCCCcEEE-
Q psy3650         345 Y---LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-------------------KGYVFQMEMVIRARQYNYTIGE-  401 (435)
Q Consensus       345 ~---~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------------------~~~~~D~el~lr~~~~G~~i~~-  401 (435)
                      .   .....++ ....++|.+.+||+++++++++....                   ....||.+|++++..+|+++.+ 
T Consensus       134 ~~~~~~~s~~g-~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~  212 (244)
T cd04190         134 WLDKAFESVFG-FVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYL  212 (244)
T ss_pred             hhcccHHHcCC-ceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEE
Confidence            1   1111122 23456888999999999998543221                   2256999999999999999999 


Q ss_pred             -eeeEEeecccccccC-CHHHHHHHHHHHH
Q psy3650         402 -VPISFVDRVYGESKL-GGTEIFQFAKALL  429 (435)
Q Consensus       402 -~p~~~~~~~~~~s~~-~~~~~~~~~~~~~  429 (435)
                       +|-...+.....|-. -+++..||+.+.+
T Consensus       213 ~~~~a~~~~~~p~s~~~~~~QR~RW~~g~~  242 (244)
T cd04190         213 YVPGAVAETDVPETFVELLSQRRRWINSTI  242 (244)
T ss_pred             EecccEEEEECCCCHHHHHHHhHhhhcccc
Confidence             898777665555533 3688888887654

Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=99.87  E-value=5.6e-21  Score=175.95  Aligned_cols=173  Identities=26%  Similarity=0.354  Sum_probs=138.0

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      +...++|||||||||+|+|.+++++++++. ..+++.+..+.|.|+++|+|.|+++|+|||++++|+|++++|++++.++
T Consensus        34 ~~~~~~EIIvVDDgS~D~T~~il~~~~~~~-~~~v~~i~~~~n~G~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~  112 (325)
T PRK10714         34 SLGKEYEILLIDDGSSDNSAEMLVEAAQAP-DSHIVAILLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLV  112 (325)
T ss_pred             hCCCCEEEEEEeCCCCCcHHHHHHHHHhhc-CCcEEEEEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHH
Confidence            445579999999999999999999987543 2345555567899999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650          83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME  162 (435)
Q Consensus        83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  162 (435)
                      +.++ +++|+|.|.+....     .++.+++.++.++.+.....+..+.|..++++++++++++.+......  ..   .
T Consensus       113 ~~~~-~~~DvV~~~r~~~~-----~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~~~l~~~~~~--~~---~  181 (325)
T PRK10714        113 AKAD-EGYDVVGTVRQNRQ-----DSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHER--ST---F  181 (325)
T ss_pred             HHHH-hhCCEEEEEEcCCC-----CcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHHHHHHHCCCC--cc---H
Confidence            9995 56898877764322     256778888888877778888899999999999999999988322211  11   1


Q ss_pred             HHHHHHhhcceeEeeeeEeeecccc
Q psy3650         163 MVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       163 l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      +...+...|.++.++|+.+..|..+
T Consensus       182 ~~~l~~~~g~~i~evpv~~~~R~~G  206 (325)
T PRK10714        182 IPILANTFARRAIEIPVHHAEREFG  206 (325)
T ss_pred             HHHHHHHcCCCEEEEEeEecCccCC
Confidence            2234556799999999998877644

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=99.86  E-value=3.5e-21  Score=175.49  Aligned_cols=196  Identities=20%  Similarity=0.159  Sum_probs=133.0

Q ss_pred             eccCCC-CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-
Q psy3650         207 PTYNEK-ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-  284 (435)
Q Consensus       207 p~~n~~-~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a-  284 (435)
                      ++||++ +.++++++++.+   |   ..+||||||+|+++  +.++++....+  ++.++..++|.|.+.|+|.|++.| 
T Consensus         1 Vtyn~~~~~l~~~l~sl~~---q---~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~Gi~~a~   70 (281)
T TIGR01556         1 VTFNPDLEHLGELITSLPK---Q---VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQGLDASF   70 (281)
T ss_pred             CccCccHHHHHHHHHHHHh---c---CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHHHHHHH
Confidence            479974 778888888765   3   35999999999765  22333333344  577777888999999999999998 


Q ss_pred             --cCCEEEEEeCCCCCCCccHHHHHHHHhcCC-CceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC---CCccc-
Q psy3650         285 --TGNFIIIMDADLSHHPKFIPEMIKLQQQEN-LDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR---PGVSD-  357 (435)
Q Consensus       285 --~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-  357 (435)
                        .+|||+++|+|+.+++++++++++.+++++ ...++|++..........+.....  ............   ..... 
T Consensus        71 ~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  148 (281)
T TIGR01556        71 RRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD--GLLLRQISLDGLTTPQKTSFL  148 (281)
T ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec--ccceeeecccccCCceeccEE
Confidence              679999999999999999999999987654 455666665443321111111100  000000000000   11111 


Q ss_pred             cccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeeeEEeeccccccc
Q psy3650         358 LTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK  415 (435)
Q Consensus       358 ~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~  415 (435)
                      .++| ++++|++++++|++.+. ..+.+|+|+|+|+.++|+++.++|.+..+|..|.++
T Consensus       149 ~~sg-~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~~  206 (281)
T TIGR01556       149 ISSG-CLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDSK  206 (281)
T ss_pred             EcCc-ceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCCcc
Confidence            2334 58999999999865443 345689999999999999999999888777666543

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=99.86  E-value=1.2e-20  Score=160.49  Aligned_cols=170  Identities=19%  Similarity=0.212  Sum_probs=122.3

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCC--CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHH
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGN--YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGL  281 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~--~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~  281 (435)
                      ||||+|||++.+.++|+++.+   |.+  ..+|||||||||+|+|.++++++..     .+.....+.|.|++.|+|.|+
T Consensus         1 VvIp~~ne~~~i~~~l~sl~~---~~~p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~aln~g~   72 (183)
T cd06438           1 ILIPAHNEEAVIGNTVRSLKA---QDYPRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYALDFGF   72 (183)
T ss_pred             CEEeccchHHHHHHHHHHHHh---cCCCCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHHHHHHH
Confidence            689999999999999998865   333  4689999999999999998876522     454545567889999999999


Q ss_pred             hhcc-----CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHH---HHHHHHHHH---HHh
Q psy3650         282 KYAT-----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL---VSRGANYLT---QLL  350 (435)
Q Consensus       282 ~~a~-----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~  350 (435)
                      ..+.     +|+++++|+|..++|++|..++..+.+ +.++|.|.+...+...   ++....   .......+.   ...
T Consensus        73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  148 (183)
T cd06438          73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA-GARVVQAYYNSKNPDD---SWITRLYAFAFLVFNRLRPLGRSN  148 (183)
T ss_pred             HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCeeEEEEeeeCCcc---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9874     899999999999999999999999965 5678888776543221   122221   111122221   112


Q ss_pred             cCCCccccccceeeecHHHHHHhhhcccCcccchhhHH
Q psy3650         351 LRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEM  388 (435)
Q Consensus       351 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el  388 (435)
                      ++... ...|++++|||+++++ +++ ......||+||
T Consensus       149 ~~~~~-~~~G~~~~~rr~~l~~-~g~-~~~~l~ED~~~  183 (183)
T cd06438         149 LGLSC-QLGGTGMCFPWAVLRQ-APW-AAHSLTEDLEF  183 (183)
T ss_pred             cCCCe-eecCchhhhHHHHHHh-CCC-CCCCcccccCC
Confidence            23222 3456678999999999 443 34666788775

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.85  E-value=9.4e-20  Score=181.75  Aligned_cols=224  Identities=13%  Similarity=0.051  Sum_probs=162.1

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..|++||+||+|||+..+.++++++.+  .+.|+++||+++++++++.|.+.+++++.++|++++++...+.|.||+.|+
T Consensus        61 ~~~~vsIlVPa~nE~~vi~~~i~~ll~--~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aL  138 (727)
T PRK11234         61 DEKPLAIMVPAWNETGVIGNMAELAAT--TLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCL  138 (727)
T ss_pred             CCCCEEEEEecCcchhhHHHHHHHHHH--hCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHH
Confidence            468999999999999999999988754  356888999999998888999999999999998777666666688999999


Q ss_pred             HHHHhhc-------c--CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH-----HH
Q psy3650         278 MHGLKYA-------T--GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR-----GA  343 (435)
Q Consensus       278 n~g~~~a-------~--~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~  343 (435)
                      |.|+..+       .  .++++++|+|+.++|+.|. ++.++.++. ++|+++....+..      +..+..+     +.
T Consensus       139 N~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~-~~VQ~p~~p~~~~------~~~~~~~~~~~EFa  210 (727)
T PRK11234        139 NNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK-DLIQIPVYPFERE------WTHFTSGTYIDEFA  210 (727)
T ss_pred             HHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC-CeEeecccCCCcc------HHHHHHHHHHHHHH
Confidence            9999987       3  3678889999999999998 667776544 8888875532211      2222211     11


Q ss_pred             ----H-HHHHHhcCCCccccccceeee-cH--HHHHHhhh--cccCcccchhhHHHHHHHHCCCcEEEeeeEEee-----
Q psy3650         344 ----N-YLTQLLLRPGVSDLTGSFRLY-KK--QVLENLVS--SCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD-----  408 (435)
Q Consensus       344 ----~-~~~~~~~~~~~~~~~~~~~~~-~r--~~~~~~~~--~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~-----  408 (435)
                          . ......++... ...|..++| +|  +++.++++  ....+..+||+++.+|++.+|+++.+.|.....     
T Consensus       211 ~~~~~~~~~~~~lgg~~-~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~  289 (727)
T PRK11234        211 ELHGKDVPVREALAGQV-PSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKER  289 (727)
T ss_pred             HHhhhhhHHHHHcCCCc-ccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccc
Confidence                1 12223333333 456667899 55  35777753  245577789999999999999999999954431     


Q ss_pred             -------------------cccccccCCHHHHHHHHHHH-HHHh
Q psy3650         409 -------------------RVYGESKLGGTEIFQFAKAL-LYLF  432 (435)
Q Consensus       409 -------------------~~~~~s~~~~~~~~~~~~~~-~~~f  432 (435)
                                         ..+.+-+-..++..||..++ |+.|
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~~q~~  333 (727)
T PRK11234        290 EQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGIVFQGF  333 (727)
T ss_pred             cccccccccccccceEEEEeCchhHHHHHHHHHHHHcccHHHHH
Confidence                               11111222368888888884 5554

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=99.85  E-value=5.2e-20  Score=166.80  Aligned_cols=206  Identities=19%  Similarity=0.280  Sum_probs=139.1

Q ss_pred             EEEEeccCCCCC------hHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEec-CCCCCCHHH
Q psy3650         203 TVLLPTYNEKEN------LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP-RKKKLGLGT  275 (435)
Q Consensus       203 sivip~~n~~~~------l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~-~~~n~g~~~  275 (435)
                      |||||++++...      +..+|.++...  +...++||||||+||++.+.+.++++.+.......+... .....|.+.
T Consensus         1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~--~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~   78 (281)
T PF10111_consen    1 SIIIPVRNRSERPDILERLRNCLESLSQF--QSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK   78 (281)
T ss_pred             CEEEEecCCccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH
Confidence            799999999854      33334444331  346789999999999999888888887765432122221 223579999


Q ss_pred             HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHH---HHhcCCCceEEeee-EECCCceeccchhHHHHHHHHHH-HHHHh
Q psy3650         276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK---LQQQENLDVVTGTR-YVGTGGVYGWDFKRKLVSRGANY-LTQLL  350 (435)
Q Consensus       276 a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~---~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  350 (435)
                      |+|.|+..|++|+|+|+|+|+.++|+.+.+++.   .+..+...+++.+. ........  ............. .....
T Consensus        79 arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~--~~~~~~~~~~~~~~~~~~~  156 (281)
T PF10111_consen   79 ARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSE--KFYSQFKNLWDHEFLESFI  156 (281)
T ss_pred             HHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhH--HHhhcchhcchHHHHHHHh
Confidence            999999999999999999999999999999999   66554444444433 33322210  1111110000011 11111


Q ss_pred             c----CCCccccccceeeecHHHHHHhhhcccCc-cc-chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         351 L----RPGVSDLTGSFRLYKKQVLENLVSSCVSK-GY-VFQMEMVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       351 ~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                      .    ........|+|++++|+.|.++||+++.. ++ .||.|++.|+.+.|+++...|....++...
T Consensus       157 ~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~~~  224 (281)
T PF10111_consen  157 SGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHSHR  224 (281)
T ss_pred             hccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccccC
Confidence            1    11122345688999999999999887765 44 599999999999999999999877765433

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=99.85  E-value=7e-20  Score=160.70  Aligned_cols=172  Identities=11%  Similarity=0.108  Sum_probs=116.7

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEcc----CCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP----RKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~----~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      ++|||||||||+|+|.++++++.++.+..+++++.    ...+.|.+.|+|.|++.|+|||++|+|+|+.++|++++.++
T Consensus        27 ~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~  106 (219)
T cd06913          27 TLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQY  106 (219)
T ss_pred             CEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcCCCEEEEECCCccCChhHHHHHH
Confidence            49999999999999999999998876654455442    34567999999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchH-HHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCchhh
Q psy3650          83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGA-NYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQ  160 (435)
Q Consensus        83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d  160 (435)
                      ..+.+.+..++ |.+...........+. ....... ....................+++|++++++|++... ..+.+|
T Consensus       107 ~~~~~~~~~~v-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD  184 (219)
T cd06913         107 EAALQHPNSII-GCQVRRIPEDSTERYT-RWINTLTREQLLTQVYTSHGPTVIMPTWFCSREWFSHVGPFDEGGKGVPED  184 (219)
T ss_pred             HHHHhCCCcEE-EEEEEecCcccchhhH-HHHHhcCHHHHHHHHHhhcCCccccccceeehhHHhhcCCccchhccchhH
Confidence            88866554444 5443332221111111 1111111 111111111111111222357899999999776543 456789


Q ss_pred             HHHHHHHHhhcceeEeeeeE
Q psy3650         161 MEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       161 ~~l~~r~~~~g~~~~~~~~~  180 (435)
                      ++++.|+.+.|.++..++..
T Consensus       185 ~~l~~r~~~~g~~i~~~~~~  204 (219)
T cd06913         185 LLFFYEHLRKGGGVYRVDRC  204 (219)
T ss_pred             HHHHHHHHHcCCceEEEcce
Confidence            99999999999988776654

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=99.84  E-value=9.6e-21  Score=161.64  Aligned_cols=159  Identities=40%  Similarity=0.657  Sum_probs=130.8

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ   85 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~   85 (435)
                      .++|||||||+|+|+|.++++++.++.+..  .++..++|.|+++++|.|++.|+|||++++|+|+.++|++|+.+++.+
T Consensus        27 ~~~eiivvd~~s~d~~~~~~~~~~~~~~~~--~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~  104 (185)
T cd04179          27 YDYEIIVVDDGSTDGTAEIARELAARVPRV--RVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKL  104 (185)
T ss_pred             CCEEEEEEcCCCCCChHHHHHHHHHhCCCe--EEEEccCCCCccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            479999999999999999999998877654  455678899999999999999999999999999999999999999997


Q ss_pred             hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHH
Q psy3650          86 QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVI  165 (435)
Q Consensus        86 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~  165 (435)
                      .+.+.++|+|.+....+. ....+.++............+.........+++.+++|+++++++......+|.+++|+++
T Consensus       105 ~~~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~~~~~~~~  183 (185)
T cd04179         105 LEGGADVVIGSRFVRGGG-AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLV  183 (185)
T ss_pred             hccCCcEEEEEeecCCCc-ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHHhhccccCcceeeEeee
Confidence            778899999998766543 2334455555555555555555667777888999999999999975667788888888887


Q ss_pred             HH
Q psy3650         166 RA  167 (435)
Q Consensus       166 r~  167 (435)
                      |+
T Consensus       184 ~~  185 (185)
T cd04179         184 GA  185 (185)
T ss_pred             cC
Confidence            63

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=99.84  E-value=3.8e-20  Score=159.27  Aligned_cols=147  Identities=16%  Similarity=0.192  Sum_probs=118.2

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC---HHHHHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTAYMHGLKYATGNFIIIMDADLSHHPKFIP   79 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g---~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~   79 (435)
                      |...++|||||||+|+|+|.++++++.+.+|..++.++..+.+.|   ++.++|.|++.|+|||++++|+|+.++|++|+
T Consensus        26 q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~  105 (196)
T cd02520          26 QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYDILVISDSDISVPPDYLR  105 (196)
T ss_pred             ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCCEEEEECCCceEChhHHH
Confidence            333449999999999999999999999888866665554554544   45678999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCch
Q psy3650          80 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYV  158 (435)
Q Consensus        80 ~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  158 (435)
                      .+++.+.+++.++|.|.                                   ...++..+++++++++++++... ....
T Consensus       106 ~l~~~~~~~~~~~v~~~-----------------------------------~~~g~~~~~r~~~~~~~ggf~~~~~~~~  150 (196)
T cd02520         106 RMVAPLMDPGVGLVTCL-----------------------------------CAFGKSMALRREVLDAIGGFEAFADYLA  150 (196)
T ss_pred             HHHHHhhCCCCCeEEee-----------------------------------cccCceeeeEHHHHHhccChHHHhHHHH
Confidence            99999876778887775                                   22345689999999999766532 2346


Q ss_pred             hhHHHHHHHHhhcceeEeeeeEeeec
Q psy3650         159 FQMEMVIRARQYNYTIGEVPISFVDR  184 (435)
Q Consensus       159 ~d~~l~~r~~~~g~~~~~~~~~~~~r  184 (435)
                      +|++++.|+.+.|+++...|....++
T Consensus       151 eD~~l~~rl~~~G~~i~~~~~~~~~~  176 (196)
T cd02520         151 EDYFLGKLIWRLGYRVVLSPYVVMQP  176 (196)
T ss_pred             HHHHHHHHHHHcCCeEEEcchheecc
Confidence            89999999999999998776554443

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=99.84  E-value=5.3e-20  Score=169.14  Aligned_cols=179  Identities=17%  Similarity=0.148  Sum_probs=122.3

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~   87 (435)
                      +|||||||||+|+|.+++.+.........+.++..+.|.|.+.|+|.|++.|+||||+|||+|+.++|+||+.|++.+.+
T Consensus        31 ~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~  110 (299)
T cd02510          31 KEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAE  110 (299)
T ss_pred             CEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHh
Confidence            69999999999999998876322211235666677889999999999999999999999999999999999999999977


Q ss_pred             CCCcEEEEeeeecCCC-cc-------------CcccchhhhhchHHHH--HHHHhCCCccccccceehhhHHHHHHhhcc
Q psy3650          88 ENLDVVTGTRYVGTGG-VY-------------GWDFKRKLVSRGANYL--TQLLLRPGVSDLTGSFRLYKKQVLENLVSS  151 (435)
Q Consensus        88 ~~~~~v~g~~~~~~~~-~~-------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (435)
                      ++..++.+ ....... ..             .+..............  .............|++.+++|++++++|++
T Consensus       111 ~~~~~v~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgf  189 (299)
T cd02510         111 NRKTVVCP-IIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGY  189 (299)
T ss_pred             CCCeEEEe-eeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCC
Confidence            66555443 2211110 00             0000000000000000  000011223344577889999999999776


Q ss_pred             cccc-Cc-hhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650         152 CVSK-GY-VFQMEMVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       152 ~~~~-~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      .... .+ .+|.|+++|+.++|+++...|.....+...
T Consensus       190 De~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~  227 (299)
T cd02510         190 DEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR  227 (299)
T ss_pred             CCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence            5433 22 489999999999999999998776666543

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=99.83  E-value=1.4e-19  Score=154.93  Aligned_cols=162  Identities=19%  Similarity=0.205  Sum_probs=113.9

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC---CCCCCHHHHHHHH
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR---KKKLGLGTAYMHG  280 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~---~~n~g~~~a~n~g  280 (435)
                      ||||+|||++.+.++|+++.+   +. +++|||||||+|+|.|.++++ +....+.  +.++..   ..+.|++.|+|.|
T Consensus         1 ViIp~~Ne~~~l~~~l~sl~~---~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~~--v~~i~~~~~~~~~Gk~~aln~g   73 (191)
T cd06436           1 VLVPCLNEEAVIQRTLASLLR---NK-PNFLVLVIDDASDDDTAGIVR-LAITDSR--VHLLRRHLPNARTGKGDALNAA   73 (191)
T ss_pred             CEEeccccHHHHHHHHHHHHh---CC-CCeEEEEEECCCCcCHHHHHh-heecCCc--EEEEeccCCcCCCCHHHHHHHH
Confidence            689999999999999999876   44 578999999999999999987 4333344  444432   3578999999999


Q ss_pred             Hhhcc-----------CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH----HHHH
Q psy3650         281 LKYAT-----------GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR----GANY  345 (435)
Q Consensus       281 ~~~a~-----------~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~  345 (435)
                      ++.+.           +|+|+++|+|..++|++|..+...+.+++.+++.+.....+...   .+...+...    ....
T Consensus        74 ~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~e~~~~~~~  150 (191)
T cd06436          74 YDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHK---NLLTILQDLEFFIIIAA  150 (191)
T ss_pred             HHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCC---CHHHHHHHHHHHHHHHH
Confidence            99875           37999999999999999999888887777777777654443221   121111111    1111


Q ss_pred             HHHHhcCCCccccccceeeecHHHHHHhhh
Q psy3650         346 LTQLLLRPGVSDLTGSFRLYKKQVLENLVS  375 (435)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  375 (435)
                      ..............|.+.+|||++++++++
T Consensus       151 ~~~~~~~~~~~~~~G~~~~~r~~~l~~vgg  180 (191)
T cd06436         151 TQSLRALTGTVGLGGNGQFMRLSALDGLIG  180 (191)
T ss_pred             HHHHHHhcCcEEECCeeEEEeHHHHHHhhc
Confidence            111111111223467778999999999955

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=99.82  E-value=2.1e-19  Score=155.53  Aligned_cols=169  Identities=17%  Similarity=0.217  Sum_probs=120.9

Q ss_pred             CCCCCeEEEEEeCCC-CcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           3 EGNYPYEIIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         3 ~~~~~~EiivvDd~S-~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      |...++||||||||| +|+|.++++++.++++   +.++..++|.|.+.++|.|+..|+||||+++|+|+.++|++++.+
T Consensus        25 q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~  101 (201)
T cd04195          25 QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTDDISLPDRFEKQ  101 (201)
T ss_pred             cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCccccCcHHHHHH
Confidence            444469999999998 7889999999987665   555567889999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh
Q psy3650          82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ  160 (435)
Q Consensus        82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  160 (435)
                      ++.+++ ++.+++.|............ ..+. ..............  .....++..+++|+++++++++... .+.+|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~rr~~~~~~g~~~~~-~~~eD  176 (201)
T cd04195         102 LDFIEKNPEIDIVGGGVLEFDSDGNDI-GKRR-LPTSHDDILKFARR--RSPFNHPTVMFRKSKVLAVGGYQDL-PLVED  176 (201)
T ss_pred             HHHHHhCCCeEEEcccEEEECCCCCee-cccc-CCCCHHHHHHHhcc--CCCCCChHHhhhHHHHHHcCCcCCC-CCchH
Confidence            999965 45677766544332221101 1111 11111111111111  1122344579999999999776544 77889


Q ss_pred             HHHHHHHHhhcceeEeeee
Q psy3650         161 MEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       161 ~~l~~r~~~~g~~~~~~~~  179 (435)
                      ++++.|+..+|+++..+|.
T Consensus       177 ~~~~~r~~~~g~~~~~~~~  195 (201)
T cd04195         177 YALWARMLANGARFANLPE  195 (201)
T ss_pred             HHHHHHHHHcCCceecccH
Confidence            9999999999999877664

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=99.82  E-value=2.7e-19  Score=152.11  Aligned_cols=153  Identities=31%  Similarity=0.462  Sum_probs=124.6

Q ss_pred             CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650           5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL   84 (435)
Q Consensus         5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~   84 (435)
                      ..++|||||||||+|+|.++++++.+++++  +.++....|.|++.|+|.|++.|.|||++++|+|+.++|++++.+++.
T Consensus        27 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~  104 (181)
T cd04187          27 GYDYEIIFVDDGSTDRTLEILRELAARDPR--VKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLAK  104 (181)
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHhhCCC--EEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            456999999999999999999999887764  555566789999999999999999999999999999999999999999


Q ss_pred             HhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHH
Q psy3650          85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMV  164 (435)
Q Consensus        85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~  164 (435)
                      + +++.++|+|.+.....     ...+....................+..+++.++++++++.++...+...|..+.+.+
T Consensus       105 ~-~~~~~~v~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~~~~  178 (181)
T cd04187         105 W-EEGYDVVYGVRKNRKE-----SWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLLPERHRFLRGLIAW  178 (181)
T ss_pred             H-hCCCcEEEEEecCCcc-----hHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhcCCCCccHHHHHHH
Confidence            5 5678999988755431     334444444444444555666788888999999999999998888888887777666


Q ss_pred             H
Q psy3650         165 I  165 (435)
Q Consensus       165 ~  165 (435)
                      +
T Consensus       179 ~  179 (181)
T cd04187         179 V  179 (181)
T ss_pred             h
Confidence            4

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=99.82  E-value=3.1e-19  Score=158.87  Aligned_cols=167  Identities=16%  Similarity=0.209  Sum_probs=115.8

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~   87 (435)
                      +|||||||+|+|+|.+++++++.. +..++++++...|.|++.|+|.|+++|+||||+++|+|+.++|++++++++.+.+
T Consensus        33 ~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~  111 (241)
T cd06427          33 LDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKPKACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFAR  111 (241)
T ss_pred             EEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchHHHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHh
Confidence            899999999999999999987532 3456777777788899999999999999999999999999999999999999975


Q ss_pred             CCCcEEE-EeeeecCCCccCcccchhhhhc----hHHHHHHHHhCCCccc-cccceehhhHHHHHHhhccccccCchhhH
Q psy3650          88 ENLDVVT-GTRYVGTGGVYGWDFKRKLVSR----GANYLTQLLLRPGVSD-LTGSFRLYKKQVLENLVSSCVSKGYVFQM  161 (435)
Q Consensus        88 ~~~~~v~-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  161 (435)
                      .+.++++ +.+.......  ..+..+....    .+..........+... ..|.+.++++++++++|+... ..+.+|+
T Consensus       112 ~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~eD~  188 (241)
T cd06427         112 LDDKLACVQAPLNYYNAR--ENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGWDP-FNVTEDA  188 (241)
T ss_pred             cCCCEEEEeCceEeeCCC--ccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCCCc-ccchhhH
Confidence            4344433 3332111111  1111111110    0111111111112222 234457899999999987654 4567899


Q ss_pred             HHHHHHHhhcceeEeee
Q psy3650         162 EMVIRARQYNYTIGEVP  178 (435)
Q Consensus       162 ~l~~r~~~~g~~~~~~~  178 (435)
                      +++.|+.+.|+++...+
T Consensus       189 ~l~~rl~~~G~r~~~~~  205 (241)
T cd06427         189 DLGLRLARAGYRTGVLN  205 (241)
T ss_pred             HHHHHHHHCCceEEEec
Confidence            99999999999987665

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>PRK10073 putative glycosyl transferase; Provisional

Probab=99.80  E-value=1.3e-18  Score=160.71  Aligned_cols=175  Identities=19%  Similarity=0.225  Sum_probs=119.7

Q ss_pred             CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      .|+..++|||||||||+|+|.++++++++++++++  ++ +++|.|.+.|+|.|++.|+||||+|+|+|+.+.|++++.+
T Consensus        30 ~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~--vi-~~~n~G~~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l  106 (328)
T PRK10073         30 AQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVR--LL-HQANAGVSVARNTGLAVATGKYVAFPDADDVVYPTMYETL  106 (328)
T ss_pred             hCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEE--EE-ECCCCChHHHHHHHHHhCCCCEEEEECCCCccChhHHHHH
Confidence            45556799999999999999999999998887644  44 3579999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEeeeec--CCCccCcccc-hhhhh----chHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650          82 IKLQQQENLDVVTGTRYVG--TGGVYGWDFK-RKLVS----RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS  154 (435)
Q Consensus        82 ~~~~~~~~~~~v~g~~~~~--~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (435)
                      ++.+.+++.|++++.....  .......... .....    .....+...+........ ....+|+++++++.+.....
T Consensus       107 ~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~l~Rr~~l~~~~~~f~~  185 (328)
T PRK10073        107 MTMALEDDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLRMALSSRRWTHV-VWLGVYRRDFIVKNNIKFEP  185 (328)
T ss_pred             HHHHHhCCCCEEEEccEEEEeCCCccccccccccccccceechHHHHHHHHhhCCCCcc-HhHHHHHHHHHHHcCCccCC
Confidence            9999878889987653221  1111000000 00000    011112222222222221 22458999999987543222


Q ss_pred             cCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650         155 KGYVFQMEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       155 ~~~~~d~~l~~r~~~~g~~~~~~~~~  180 (435)
                      ....+|..+..++...+.++..++..
T Consensus       186 ~~~~eD~~~~~~~~~~~~~v~~~~~~  211 (328)
T PRK10073        186 GLHHQDIPWTTEVMFNALRVRYTEQS  211 (328)
T ss_pred             CCEeccHHHHHHHHHHCCEEEEECCC
Confidence            22346899999988888887766543

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=99.80  E-value=1.5e-19  Score=152.71  Aligned_cols=170  Identities=22%  Similarity=0.318  Sum_probs=121.8

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      |+||+||+.+.+.++|+++.+   |.+.++||+||||+|+|+|.+.++++....+. .+.++..++|.|++.++|.|++.
T Consensus         1 Viip~~n~~~~l~~~l~sl~~---q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~n~~~~~   76 (180)
T cd06423           1 IIVPAYNEEAVIERTIESLLA---LDYPKLEVIVVDDGSTDDTLEILEELAALYIR-RVLVVRDKENGGKAGALNAGLRH   76 (180)
T ss_pred             CeecccChHHHHHHHHHHHHh---CCCCceEEEEEeCCCccchHHHHHHHhccccc-eEEEEEecccCCchHHHHHHHHh
Confidence            689999999999999988866   55578999999999999999999887665433 45556678899999999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHH-hcCCCceEEeeeEECCCc-eeccchhHHHHHHHHHH-HHHHhcCCCcccccc
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGG-VYGWDFKRKLVSRGANY-LTQLLLRPGVSDLTG  360 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  360 (435)
                      ++++|++++|+|+.+++++|.+++..+ .+++.+++.+........ ................. ..............|
T Consensus        77 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  156 (180)
T cd06423          77 AKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLVLSG  156 (180)
T ss_pred             cCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceeecCc
Confidence            999999999999999999999995554 456677777776655432 11000000000000000 000011123345688


Q ss_pred             ceeeecHHHHHHhhhcc
Q psy3650         361 SFRLYKKQVLENLVSSC  377 (435)
Q Consensus       361 ~~~~~~r~~~~~~~~~~  377 (435)
                      ++++++|+++++++++.
T Consensus       157 ~~~~~~~~~~~~~ggf~  173 (180)
T cd06423         157 AFGAFRREALREVGGWD  173 (180)
T ss_pred             hHHHHHHHHHHHhCCcc
Confidence            88999999999998643

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.80  E-value=2.1e-18  Score=152.50  Aligned_cols=169  Identities=17%  Similarity=0.186  Sum_probs=119.1

Q ss_pred             CCCCC--eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCC--CCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcH
Q psy3650           3 EGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFI   78 (435)
Q Consensus         3 ~~~~~--~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~--~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l   78 (435)
                      |+..+  +|||||||||+|+|.++++ +....+..++.++..+  .+.|++.++|.|++.+.+|||+++|+|+.++|++|
T Consensus        22 q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~~d~i~~~D~D~~~~~~~l  100 (229)
T cd04192          22 LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDADCVVPSNWL  100 (229)
T ss_pred             CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHHHHHHhcCCEEEEECCCcccCHHHH
Confidence            44444  8999999999999999988 5444555566666555  57899999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhch---HH--HHHHHHhCCCccccccceehhhHHHHHHhhcccc
Q psy3650          79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRG---AN--YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV  153 (435)
Q Consensus        79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (435)
                      +++++.+.+++..++.|.........    +........   ..  .......+. .....+++.++++++++++|++..
T Consensus       101 ~~l~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~rr~~~~~~ggf~~  175 (229)
T cd04192         101 LTFVAFIQKEQIGLVAGPVIYFKGKS----LLAKFQRLDWLSLLGLIAGSFGLGK-PFMCNGANMAYRKEAFFEVGGFEG  175 (229)
T ss_pred             HHHHHHhhcCCCcEEeeeeeecCCcc----HHHHHHHHHHHHHHHHHhhHHHhcC-ccccccceEEEEHHHHHHhcCCcc
Confidence            99999987778888887765442221    111111100   00  000111111 112235567999999999977653


Q ss_pred             -ccCchhhHHHHHHHHhhcc-eeEee
Q psy3650         154 -SKGYVFQMEMVIRARQYNY-TIGEV  177 (435)
Q Consensus       154 -~~~~~~d~~l~~r~~~~g~-~~~~~  177 (435)
                       .....+|.++++|+.+.|+ ++...
T Consensus       176 ~~~~~~eD~~~~~~~~~~g~~~~~~~  201 (229)
T cd04192         176 NDHIASGDDELLLAKVASKYPKVAYL  201 (229)
T ss_pred             ccccccCCHHHHHHHHHhCCCCEEEe
Confidence             3455678999999999999 66544

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=99.79  E-value=1.4e-18  Score=150.32  Aligned_cols=168  Identities=20%  Similarity=0.212  Sum_probs=119.6

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      |...++|||||||||+|+|.++++++..+     ++++..++|.|++.++|.|++.|++|||+++|+|+.+.|+++..++
T Consensus        23 q~~~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~   97 (202)
T cd06433          23 QTYPNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAMNKGIALATGDIIGFLNSDDTLLPGALLAVV   97 (202)
T ss_pred             CCCCCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHHHHHHHHcCCCEEEEeCCCcccCchHHHHHH
Confidence            44445999999999999999999998653     2233357889999999999999999999999999999999999999


Q ss_pred             HHH-hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhH
Q psy3650          83 KLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQM  161 (435)
Q Consensus        83 ~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  161 (435)
                      ..+ ..++.+++.|................    ............  . ...+...+++++++++++.+.....+.+|.
T Consensus        98 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~D~  170 (202)
T cd06433          98 AAFAEHPEVDVVYGDVLLVDENGRVIGRRR----PPPFLDKFLLYG--M-PICHQATFFRRSLFEKYGGFDESYRIAADY  170 (202)
T ss_pred             HHHHhCCCccEEEeeeEEEcCCCCcccCCC----CcchhhhHHhhc--C-cccCcceEEEHHHHHHhCCCchhhCchhhH
Confidence            555 44678999988755433221111110    000111111111  1 112334579999999997655555567799


Q ss_pred             HHHHHHHhhcceeEeeeeEee
Q psy3650         162 EMVIRARQYNYTIGEVPISFV  182 (435)
Q Consensus       162 ~l~~r~~~~g~~~~~~~~~~~  182 (435)
                      +++.|+.+.|+++...|....
T Consensus       171 ~~~~r~~~~g~~~~~~~~~~~  191 (202)
T cd06433         171 DLLLRLLLAGKIFKYLPEVLA  191 (202)
T ss_pred             HHHHHHHHcCCceEecchhhh
Confidence            999999999999876665543

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=99.79  E-value=1.7e-18  Score=149.91  Aligned_cols=168  Identities=18%  Similarity=0.251  Sum_probs=119.9

Q ss_pred             CCCCCeEEEEEeCCCCcChH-HHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~-~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      |+..++|||||||||+|++. ++++++....+.  +.++..++|.|.+.++|.|++.|++||++++|+|+.++|++++.+
T Consensus        27 q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~  104 (202)
T cd04184          27 QTYPNWELCIADDASTDPEVKRVLKKYAAQDPR--IKVVFREENGGISAATNSALELATGEFVALLDHDDELAPHALYEV  104 (202)
T ss_pred             CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCC--EEEEEcccCCCHHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHH
Confidence            44456999999999999755 566666665554  544557789999999999999999999999999999999999999


Q ss_pred             HHHH-hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh
Q psy3650          82 IKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ  160 (435)
Q Consensus        82 ~~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  160 (435)
                      ++.+ .+++.+++++..........   ............  .....   ....+++.++++++++++|++.......+|
T Consensus       105 ~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~r~~~~~iggf~~~~~~~eD  176 (202)
T cd04184         105 VKALNEHPDADLIYSDEDKIDEGGK---RSEPFFKPDWSP--DLLLS---QNYIGHLLVYRRSLVRQVGGFREGFEGAQD  176 (202)
T ss_pred             HHHHHhCCCCCEEEccHHhccCCCC---EeccccCCCCCH--HHhhh---cCCccceEeEEHHHHHHhCCCCcCcccchh
Confidence            9999 55778888776533221110   011111000000  01111   123456678999999999776555446789


Q ss_pred             HHHHHHHHhhcceeEeeeeE
Q psy3650         161 MEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       161 ~~l~~r~~~~g~~~~~~~~~  180 (435)
                      +++++|+.++|+++..+|-.
T Consensus       177 ~~l~~rl~~~g~~~~~~~~~  196 (202)
T cd04184         177 YDLVLRVSEHTDRIAHIPRV  196 (202)
T ss_pred             HHHHHHHHhccceEEEccHh
Confidence            99999999999998887743

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=99.79  E-value=1.2e-18  Score=164.45  Aligned_cols=171  Identities=15%  Similarity=0.168  Sum_probs=122.7

Q ss_pred             CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC---HHHHHHHHHhhccCCEEEEEcCCCCCCCCcH
Q psy3650           3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTAYMHGLKYATGNFIIIMDADLSHHPKFI   78 (435)
Q Consensus         3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g---~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l   78 (435)
                      +|+|| +||||+||+|+|.|.++++++++++|+.++.++..+++.|   +..+++.+++.|+|||++++|+|+.++|++|
T Consensus        65 ~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L  144 (373)
T TIGR03472        65 RQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHARHDILVIADSDISVGPDYL  144 (373)
T ss_pred             hcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhccCCEEEEECCCCCcChhHH
Confidence            45666 9999999999999999999999999887776665554444   6677778899999999999999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhc----hHHH--HHHHHhCCCccccccceehhhHHHHHHhhccc
Q psy3650          79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR----GANY--LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC  152 (435)
Q Consensus        79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (435)
                      +.+++.+++++.++|.+........    .+...+...    .+..  ......+ ......|.+.++||++++++|++.
T Consensus       145 ~~lv~~~~~~~v~~V~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~a~RR~~l~~iGGf~  219 (373)
T TIGR03472       145 RQVVAPLADPDVGLVTCLYRGRPVP----GFWSRLGAMGINHNFLPSVMVARALG-RARFCFGATMALRRATLEAIGGLA  219 (373)
T ss_pred             HHHHHHhcCCCcceEeccccCCCCC----CHHHHHHHHHhhhhhhHHHHHHHhcc-CCccccChhhheeHHHHHHcCChH
Confidence            9999999777888888754322111    122111111    0000  0011111 112234667799999999998776


Q ss_pred             cc-cCchhhHHHHHHHHhhcceeEeee
Q psy3650         153 VS-KGYVFQMEMVIRARQYNYTIGEVP  178 (435)
Q Consensus       153 ~~-~~~~~d~~l~~r~~~~g~~~~~~~  178 (435)
                      .. ....+|+++..++.++|+++...+
T Consensus       220 ~~~~~~~ED~~l~~~i~~~G~~v~~~~  246 (373)
T TIGR03472       220 ALAHHLADDYWLGELVRALGLRVVLAP  246 (373)
T ss_pred             HhcccchHHHHHHHHHHHcCCeEEecc
Confidence            43 345689999999999999986544

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=99.79  E-value=3.8e-18  Score=151.11  Aligned_cols=169  Identities=19%  Similarity=0.245  Sum_probs=115.9

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhC--CceEEEccCCCCCC-HHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYG--SEKIVLKPRKKKLG-LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL   84 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~--~~~i~~~~~~~n~g-~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~   84 (435)
                      +||||||| |+|+|.++++++..+++  .+++.++...++.| +++++|.|++.|+||||+++|+|+.++|++|+.+...
T Consensus        33 ~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~  111 (232)
T cd06437          33 LEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPY  111 (232)
T ss_pred             eEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhh
Confidence            79999988 99999999998876543  33566555565666 6889999999999999999999999999999998887


Q ss_pred             HhcCCCcEEEEeeeecCCCccCcccchhhhhchHH---HHHH--HHhCCCccccccceehhhHHHHHHhhccccccCchh
Q psy3650          85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN---YLTQ--LLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVF  159 (435)
Q Consensus        85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (435)
                      +.++++++|.+.........   .+..........   ....  ...........++..+|||++++++|+... ..+.+
T Consensus       112 ~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~E  187 (232)
T cd06437         112 FADPKLGFVQTRWGHINANY---SLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAGGWNH-DTLTE  187 (232)
T ss_pred             hcCCCeEEEecceeeEcCCC---chhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhCCCCC-Ccchh
Confidence            76566677776543222111   111111110000   0000  011111222334556899999999977654 44678


Q ss_pred             hHHHHHHHHhhcceeEeeeeEe
Q psy3650         160 QMEMVIRARQYNYTIGEVPISF  181 (435)
Q Consensus       160 d~~l~~r~~~~g~~~~~~~~~~  181 (435)
                      |++++.|+...|+++...|...
T Consensus       188 D~~l~~rl~~~G~~~~~~~~~~  209 (232)
T cd06437         188 DLDLSYRAQLKGWKFVYLDDVV  209 (232)
T ss_pred             hHHHHHHHHHCCCeEEEeccce
Confidence            9999999999999988877543

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=99.79  E-value=2e-17  Score=164.25  Aligned_cols=230  Identities=12%  Similarity=0.151  Sum_probs=153.1

Q ss_pred             CCCCcceEEEEeccCCCC-----ChHHHHHHHHHHhhcCC-CCeEEEEEeCCCCcchHHH----HHHHHHHhC-CceEEE
Q psy3650         196 DSVKNKYTVLLPTYNEKE-----NLPIIVYLITKYMDEGN-YPYEIIVIDDGSPDGTLDA----AKQLQSIYG-SEKIVL  264 (435)
Q Consensus       196 ~~~~~~isivip~~n~~~-----~l~~~l~~l~~~~~~~~-~~~eiivvdd~s~d~t~~~----~~~~~~~~~-~~~i~~  264 (435)
                      ....++++|+||+|||+.     .++.+++++.+   +.+ .++|++++||++++++...    +.+++++++ ..++.+
T Consensus       120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~---~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y  196 (691)
T PRK05454        120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAA---TGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY  196 (691)
T ss_pred             CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh---cCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            345789999999999885     35555555543   333 4799999999999987543    345555543 336667


Q ss_pred             ecCCCCCC-HHHHHHHHHhh--ccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHH
Q psy3650         265 KPRKKKLG-LGTAYMHGLKY--ATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVS  340 (435)
Q Consensus       265 ~~~~~n~g-~~~a~n~g~~~--a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  340 (435)
                      .....|.| |+.+++.+++.  +++||++++|+|..++++.+.+++..++ ++++++|++.....+..    +++.++..
T Consensus       197 r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~----slfaR~qq  272 (691)
T PRK05454        197 RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGAD----TLFARLQQ  272 (691)
T ss_pred             EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCC----CHHHHHHH
Confidence            66666666 78888888988  5669999999999999999999999986 77888888765544433    23333222


Q ss_pred             ---HHHHHHHH--Hhc-CCCccccccceeeecHHHHHHhhhcc--------cCcccchhhHHHHHHHHCCCcEEEeeeEE
Q psy3650         341 ---RGANYLTQ--LLL-RPGVSDLTGSFRLYKKQVLENLVSSC--------VSKGYVFQMEMVIRARQYNYTIGEVPISF  406 (435)
Q Consensus       341 ---~~~~~~~~--~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~~~D~el~lr~~~~G~~i~~~p~~~  406 (435)
                         ..+..+..  ... ...-....|...++|+++|.+.++..        ......+|+++..+++.+||++.++|...
T Consensus       273 f~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~  352 (691)
T PRK05454        273 FATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLP  352 (691)
T ss_pred             HHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCccc
Confidence               22211111  000 01222345666899999999985422        13456689999999999999999999843


Q ss_pred             -eecccccccCC-HHHHHHHHHHHHHHh
Q psy3650         407 -VDRVYGESKLG-GTEIFQFAKALLYLF  432 (435)
Q Consensus       407 -~~~~~~~s~~~-~~~~~~~~~~~~~~f  432 (435)
                       .+.....+-.. .++..|+....++.+
T Consensus       353 ~~~ee~P~tl~~~~~qr~RW~~G~lQ~l  380 (691)
T PRK05454        353 GSYEELPPNLLDELKRDRRWCQGNLQHL  380 (691)
T ss_pred             cccccCCCCHHHHHHHHHHHHhchHHHH
Confidence             33222222222 455666666655543

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=99.79  E-value=2.9e-18  Score=162.46  Aligned_cols=169  Identities=22%  Similarity=0.335  Sum_probs=120.7

Q ss_pred             CCCCC--eEEEEEeCCCCcChHHHHHHHHHHhCCc-eEEEccCC----CCCCHHHHHHHHHhhcc-----CCEEEEEcCC
Q psy3650           3 EGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSE-KIVLKPRK----KKLGLGTAYMHGLKYAT-----GNFIIIMDAD   70 (435)
Q Consensus         3 ~~~~~--~EiivvDd~S~d~t~~i~~~~~~~~~~~-~i~~~~~~----~n~g~~~a~n~gl~~a~-----gd~i~~lD~D   70 (435)
                      +|+||  +|||||||+|+|+|.++++++.+++|.. +++++..+    .+.|++.|+|.|++.|+     +||++++|+|
T Consensus        64 ~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD  143 (384)
T TIGR03469        64 EQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDAD  143 (384)
T ss_pred             hCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCC
Confidence            34554  8999999999999999999998877621 45554422    34689999999999999     9999999999


Q ss_pred             CCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHh------C--CCccccccceehhhH
Q psy3650          71 LSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL------R--PGVSDLTGSFRLYKK  142 (435)
Q Consensus        71 ~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~  142 (435)
                      +.++|++++++++.+++++.+++.+........     +..+.....+........      .  .......|++.+++|
T Consensus       144 ~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr  218 (384)
T TIGR03469       144 IAHGPDNLARLVARARAEGLDLVSLMVRLRCES-----FWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRR  218 (384)
T ss_pred             CCCChhHHHHHHHHHHhCCCCEEEecccccCCC-----HHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEH
Confidence            999999999999999888888887654333221     112211111111111111      0  111223577899999


Q ss_pred             HHHHHhhccccc-cCchhhHHHHHHHHhhcceeEe
Q psy3650         143 QVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGE  176 (435)
Q Consensus       143 ~~~~~~~~~~~~-~~~~~d~~l~~r~~~~g~~~~~  176 (435)
                      ++++++|++... ....+|.++..|+++.|+++..
T Consensus       219 ~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~  253 (384)
T TIGR03469       219 EALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWL  253 (384)
T ss_pred             HHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEE
Confidence            999999776542 3467899999999999987655

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=99.78  E-value=3.8e-18  Score=151.36  Aligned_cols=168  Identities=16%  Similarity=0.167  Sum_probs=117.0

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCC-CHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKL-GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~-g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      +|||||||||+|+|.++++++..++   .++++....|. ++++++|.|++.|+||||+++|+|+.++|++|+.+++.+.
T Consensus        34 ~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~  110 (234)
T cd06421          34 LRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNRHAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFL  110 (234)
T ss_pred             EEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCCCCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHh
Confidence            7999999999999999999987654   23333344444 4688899999999999999999999999999999999997


Q ss_pred             c-CCCcEEEEeeeecCCCccCcccchhhhh---chHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650          87 Q-ENLDVVTGTRYVGTGGVYGWDFKRKLVS---RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME  162 (435)
Q Consensus        87 ~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  162 (435)
                      + ++.+++.|........... ...+....   .............+.....+++.+++++++++++++. ...+.+|++
T Consensus       111 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ig~~~-~~~~~eD~~  188 (234)
T cd06421         111 DDPKVALVQTPQFFYNPDPFD-WLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDEIGGFP-TDSVTEDLA  188 (234)
T ss_pred             cCCCeEEEecceEEecCCcch-hHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHHhCCCC-ccceeccHH
Confidence            7 5667777765443322110 01111110   0111111111112233344668899999999997755 345678999


Q ss_pred             HHHHHHhhcceeEeeeeE
Q psy3650         163 MVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       163 l~~r~~~~g~~~~~~~~~  180 (435)
                      ++.|+.+.|+++...|..
T Consensus       189 l~~r~~~~g~~i~~~~~~  206 (234)
T cd06421         189 TSLRLHAKGWRSVYVPEP  206 (234)
T ss_pred             HHHHHHHcCceEEEecCc
Confidence            999999999998776644

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.78  E-value=2.4e-17  Score=162.38  Aligned_cols=200  Identities=12%  Similarity=0.063  Sum_probs=141.6

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..+.+||+||+|||++.+.++++++.+.  ..|++++|+++....+.+|.+.++++...+|.++++.++++++.||+.|+
T Consensus        69 ~~~~vsIlVPa~nE~~VI~~~v~~ll~~--ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~AL  146 (703)
T PRK15489         69 DEQPLAIMVPAWKEYDVIAKMIENMLAT--LDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCL  146 (703)
T ss_pred             CCCceEEEEeCCCcHHHHHHHHHHHHhc--CCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHH
Confidence            4579999999999999999999987543  45778999996444444888889999888888788777887789999999


Q ss_pred             HHHHhhc-------cCC--EEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHH-HHHHH---H
Q psy3650         278 MHGLKYA-------TGN--FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKL-VSRGA---N  344 (435)
Q Consensus       278 n~g~~~a-------~~d--~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~---~  344 (435)
                      |.|+..+       .++  .+++.|+|+.++|+.|..| +++.. +.+++.++.......  ..++.... ...+.   .
T Consensus       147 N~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~-~~~~iQ~pV~~~~~~--~~~~l~~~~~~Efa~~~~  222 (703)
T PRK15489        147 NWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLP-RKDLVQLPVLSLERK--WYEWVAGTYMDEFAEWHQ  222 (703)
T ss_pred             HHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcC-CcceeeeeeccCCCc--cccHHHHHHHHHHHHHhh
Confidence            9999986       333  4999999999999999877 44433 336777754332211  01222222 11111   1


Q ss_pred             --HHHHHhcCCCccccccceeeecHHHHHHh---hh-ccc-CcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         345 --YLTQLLLRPGVSDLTGSFRLYKKQVLENL---VS-SCV-SKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       345 --~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~-~~~-~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                        ...+...+..+ ..+|...+|+|++++++   ++ ..+ ....+||+|+.+|++..|++..++-+
T Consensus       223 ~~l~~r~~l~~~i-pl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~  288 (703)
T PRK15489        223 KDLVVRESLTGTV-PSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFVRF  288 (703)
T ss_pred             hHHHHHHHcCCce-eccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEEEE
Confidence              12223334444 24555689999999987   32 233 36778999999999999999988444

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.78  E-value=2.4e-18  Score=150.43  Aligned_cols=172  Identities=19%  Similarity=0.183  Sum_probs=117.7

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      |+..++|||||||||+|+|.++++++++++| ..++++....|.|.+.++|.|+..++||||+++|+|+.++|++|+.++
T Consensus        23 q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~  101 (214)
T cd04196          23 QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQDDIWLPDKLERLL  101 (214)
T ss_pred             CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHHHHHHHhCCCCEEEEECCCcccChhHHHHHH
Confidence            4434699999999999999999999998876 356666778899999999999999999999999999999999999999


Q ss_pred             HHHhc-CCCcEEEEeeeecCCCc--cCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchh
Q psy3650          83 KLQQQ-ENLDVVTGTRYVGTGGV--YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVF  159 (435)
Q Consensus        83 ~~~~~-~~~~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (435)
                      +.+.+ +..+++.+.........  ........................   ...+...++++++++.++.......+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~  178 (214)
T cd04196         102 KAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQN---VVTGCTMAFNRELLELALPFPDADVIMH  178 (214)
T ss_pred             HHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhC---ccCCceeeEEHHHHHhhccccccccccc
Confidence            99544 45566666543322211  111111111100000111111111   1224456899999999976555546777


Q ss_pred             hHHHHHHHHhhcceeEeeee
Q psy3650         160 QMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       160 d~~l~~r~~~~g~~~~~~~~  179 (435)
                      |.++..++.+ +.++..++.
T Consensus       179 D~~~~~~~~~-~~~~~~~~~  197 (214)
T cd04196         179 DWWLALLASA-FGKVVFLDE  197 (214)
T ss_pred             hHHHHHHHHH-cCceEEcch
Confidence            8888887766 556665554

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=99.77  E-value=2.1e-18  Score=154.49  Aligned_cols=173  Identities=21%  Similarity=0.114  Sum_probs=122.6

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ   85 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~   85 (435)
                      .++|||||||||+|+|.++++++.++++.  +.++.. ++.|.+.++|.|++.|++||++++|+|+.++|++|+++++.+
T Consensus        30 ~~~evivvd~~s~d~~~~~~~~~~~~~~~--v~~i~~-~~~~~~~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~  106 (249)
T cd02525          30 DLIEIIVVDGGSTDGTREIVQEYAAKDPR--IRLIDN-PKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILELVEAL  106 (249)
T ss_pred             CccEEEEEeCCCCccHHHHHHHHHhcCCe--EEEEeC-CCCCchHHHHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            35999999999999999999999877654  555443 456899999999999999999999999999999999999998


Q ss_pred             hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHH---HHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650          86 QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL---TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME  162 (435)
Q Consensus        86 ~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  162 (435)
                      .+++.+++.|.............. ...........   .............+++.+++++++.+++.........+|.+
T Consensus       107 ~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~  185 (249)
T cd02525         107 KRTGADNVGGPMETIGESKFQKAI-AVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAE  185 (249)
T ss_pred             hcCCCCEEecceecCCCChHHHHH-HHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcccCccchhH
Confidence            888888888876544332111000 00000000000   00000000112346677999999999976655555578999


Q ss_pred             HHHHHHhhcceeEeeeeEee
Q psy3650         163 MVIRARQYNYTIGEVPISFV  182 (435)
Q Consensus       163 l~~r~~~~g~~~~~~~~~~~  182 (435)
                      ++.|+.+.|+++...|....
T Consensus       186 l~~r~~~~G~~~~~~~~~~~  205 (249)
T cd02525         186 LNYRLRKAGYKIWLSPDIRV  205 (249)
T ss_pred             HHHHHHHcCcEEEEcCCeEE
Confidence            99999999999987775443

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>PRK11204 N-glycosyltransferase; Provisional

Probab=99.77  E-value=8.1e-18  Score=162.31  Aligned_cols=169  Identities=18%  Similarity=0.245  Sum_probs=123.4

Q ss_pred             CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      ++.|| +|||||||||+|+|.++++++.+++|+  +.++..++|.|+++|+|.|++.+++||++++|+|+.++|++++.+
T Consensus        78 ~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~--v~~i~~~~n~Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l  155 (420)
T PRK11204         78 ALRYPNYEVIAINDGSSDNTGEILDRLAAQIPR--LRVIHLAENQGKANALNTGAAAARSEYLVCIDGDALLDPDAAAYM  155 (420)
T ss_pred             hCCCCCeEEEEEECCCCccHHHHHHHHHHhCCc--EEEEEcCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHH
Confidence            34555 999999999999999999999888775  555556789999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHH------HHHHHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650          82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN------YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS  154 (435)
Q Consensus        82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (435)
                      ++.+++ ++.++|.|.........    +........+.      .......+ ......|.+.++|+++++++|+... 
T Consensus       156 ~~~~~~~~~v~~v~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~vgg~~~-  229 (420)
T PRK11204        156 VEHFLHNPRVGAVTGNPRIRNRST----LLGRIQVGEFSSIIGLIKRAQRVYG-RVFTVSGVITAFRKSALHEVGYWST-  229 (420)
T ss_pred             HHHHHhCCCeEEEECCceeccchh----HHHHHHHHHHHHhhhHHHHHHHHhC-CceEecceeeeeeHHHHHHhCCCCC-
Confidence            999954 56777777654433211    11111100000      00111111 2223346678999999999976543 


Q ss_pred             cCchhhHHHHHHHHhhcceeEeeee
Q psy3650         155 KGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       155 ~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      ....+|.|+..|+.++|+++...|.
T Consensus       230 ~~~~ED~~l~~rl~~~G~~i~~~p~  254 (420)
T PRK11204        230 DMITEDIDISWKLQLRGWDIRYEPR  254 (420)
T ss_pred             CcccchHHHHHHHHHcCCeEEeccc
Confidence            3457899999999999999877664

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=99.76  E-value=1e-17  Score=152.63  Aligned_cols=172  Identities=24%  Similarity=0.313  Sum_probs=118.0

Q ss_pred             CCCeEEEEEeCCCCcChHHHHHHHHHHh-CCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCC-CCCCcHHHHH
Q psy3650           5 NYPYEIIVIDDGSPDGTLDAAKQLQSIY-GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMI   82 (435)
Q Consensus         5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~-~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~-~~~~~l~~~~   82 (435)
                      ..++|||||||||+|+|.++++++..+. +...+. .....|.|++.|+|.|+..++||||+++|+|+. ++|++++.++
T Consensus        60 ~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~-~~~~~n~Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~  138 (306)
T PRK13915         60 PLVDELIVIDSGSTDATAERAAAAGARVVSREEIL-PELPPRPGKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLL  138 (306)
T ss_pred             CCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhh-hccccCCCHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHH
Confidence            3468999999999999999999875431 111111 123678999999999999999999999999996 8999999999


Q ss_pred             HHHh-cCCCcEEEEeeeecCC--CccCcccchhhhhchHHHHHHHHhC--CCccccccceehhhHHHHHHhhccccccCc
Q psy3650          83 KLQQ-QENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLR--PGVSDLTGSFRLYKKQVLENLVSSCVSKGY  157 (435)
Q Consensus        83 ~~~~-~~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (435)
                      +.+. ++++++|.|.......  ..................+......  ..+.+..+|++++++++++.+.   +..+|
T Consensus       139 ~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~~~~~~l~~i~dp~sG~~a~rr~~l~~l~---~~~~y  215 (306)
T PRK13915        139 GPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLNLLRPELAGFVQPLGGEYAGRRELLESLP---FVPGY  215 (306)
T ss_pred             HHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHHHHHHhhhcccCcchHhHHHHHHHHHhCC---CCCCC
Confidence            9996 5678999886332110  0000001111111111111111111  3566788899999999999874   34678


Q ss_pred             hhhHHHHHHHH-hhcc-eeEeeeeE
Q psy3650         158 VFQMEMVIRAR-QYNY-TIGEVPIS  180 (435)
Q Consensus       158 ~~d~~l~~r~~-~~g~-~~~~~~~~  180 (435)
                      ..|.++...+. +.|. ++.+++..
T Consensus       216 g~e~~~l~~~~~~~g~~~i~~V~l~  240 (306)
T PRK13915        216 GVEIGLLIDTLDRLGLDAIAQVDLG  240 (306)
T ss_pred             eehHHHHHHHHHHhCcCceEEEEec
Confidence            88999999886 4677 77777654

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.76  E-value=7.7e-18  Score=145.80  Aligned_cols=148  Identities=23%  Similarity=0.246  Sum_probs=117.4

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCCCCCCCcHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADLSHHPKFIP   79 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~~~~~~~l~   79 (435)
                      |+..++|||||||||+|+|.++++++.++.+   +.++..++|.|.+.++|.|++.|   .+||++++|+|+.++|++++
T Consensus        22 q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~   98 (202)
T cd04185          22 QTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALE   98 (202)
T ss_pred             ccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHH
Confidence            4444699999999999999999999876543   56666788999999999999886   58999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcccc-ccCch
Q psy3650          80 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYV  158 (435)
Q Consensus        80 ~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  158 (435)
                      ++++.++++..+++.+.+....+                               ..+..++++++++.++.... ...+.
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~  147 (202)
T cd04185          99 KLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVGVLISRRVVEKIGLPDKEFFIWG  147 (202)
T ss_pred             HHHHHHhcCCceEecceeEcCCC-------------------------------ceEEEEEeHHHHHHhCCCChhhhccc
Confidence            99999976667776665433321                               12336899999999975443 34567


Q ss_pred             hhHHHHHHHHhhcceeEeeeeEeeecc
Q psy3650         159 FQMEMVIRARQYNYTIGEVPISFVDRV  185 (435)
Q Consensus       159 ~d~~l~~r~~~~g~~~~~~~~~~~~r~  185 (435)
                      +|.++..|+.+.|+++ ..|.....+.
T Consensus       148 eD~~~~~r~~~~G~~i-~~~~~~~~h~  173 (202)
T cd04185         148 DDTEYTLRASKAGPGI-YVPDAVVVHK  173 (202)
T ss_pred             hHHHHHHHHHHcCCcE-EecceEEEEc
Confidence            8999999999999999 6665555444

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=99.76  E-value=2.4e-17  Score=147.83  Aligned_cols=168  Identities=20%  Similarity=0.261  Sum_probs=119.0

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~   87 (435)
                      +|||||||+|+|+|.++++++.++    .+.++..++|.|+++++|.|++.|+|||++++|+|+.++|++++++++.+.+
T Consensus        61 ~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~  136 (251)
T cd06439          61 LEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFAD  136 (251)
T ss_pred             EEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC
Confidence            899999999999999999998764    3555567889999999999999999999999999999999999999999976


Q ss_pred             CCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHh-CCCccccccceehhhHHHHHHhhccccccCchhhHHHHHH
Q psy3650          88 ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL-RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIR  166 (435)
Q Consensus        88 ~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r  166 (435)
                      ++.+++.|......+..  .................... ........|++.++++++++..    ......+|.++..+
T Consensus       137 ~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~----~~~~~~eD~~l~~~  210 (251)
T cd06439         137 PSVGAVSGELVIVDGGG--SGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELFRPL----PADTINDDFVLPLR  210 (251)
T ss_pred             CCccEEEeEEEecCCcc--cchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHhcCC----CcccchhHHHHHHH
Confidence            77888888765543321  00000111011111111111 1123334456678999999822    22345679999999


Q ss_pred             HHhhcceeEeeeeEeeecc
Q psy3650         167 ARQYNYTIGEVPISFVDRV  185 (435)
Q Consensus       167 ~~~~g~~~~~~~~~~~~r~  185 (435)
                      +.+.|+++...|.....+.
T Consensus       211 ~~~~G~~~~~~~~~~~~~~  229 (251)
T cd06439         211 IARQGYRVVYEPDAVAYEE  229 (251)
T ss_pred             HHHcCCeEEeccccEEEEe
Confidence            9999999877765544333

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>PRK10063 putative glycosyl transferase; Provisional

Probab=99.76  E-value=2.1e-17  Score=146.63  Aligned_cols=164  Identities=16%  Similarity=0.245  Sum_probs=111.7

Q ss_pred             CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650           5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL   84 (435)
Q Consensus         5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~   84 (435)
                      ..++|||||||||+|+|.++++++.++.   ++.++. ++|.|.++|+|.|++.|+||||+++|+||.+.|+.++.+.+.
T Consensus        31 ~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~-~~~~G~~~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~  106 (248)
T PRK10063         31 GISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVS-EPDNGIYDAMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQL  106 (248)
T ss_pred             CCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHH
Confidence            3469999999999999999999986432   355554 456799999999999999999999999999999876654444


Q ss_pred             HhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHH
Q psy3650          85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMV  164 (435)
Q Consensus        85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~  164 (435)
                      ..+++.++++|.+....+..  ....+.....      ..... ... ......+++++.++.. ++.....+.+|++++
T Consensus       107 ~~~~~~~~v~g~~~~~~~~~--~~~~~~~~~~------~~~~~-~~~-~~~~~~~~~~~~~~~~-~fd~~~~~~~Dydl~  175 (248)
T PRK10063        107 KMQKDNAMIIGDALLDFGDG--HKIKRSAKPG------WYIYH-SLP-ASHQAIFFPVSGLKKW-RYDLQYKVSSDYALA  175 (248)
T ss_pred             HhCCCCeEEEeeeEEEcCCC--cEEEEccCCh------hHHhc-CCC-CCCcEEEEEHHHHhcC-CCCcccchHHhHHHH
Confidence            44456778888875433221  0111111110      01111 111 1122356788888753 334445667899999


Q ss_pred             HHHHhhcceeEeeeeEeee
Q psy3650         165 IRARQYNYTIGEVPISFVD  183 (435)
Q Consensus       165 ~r~~~~g~~~~~~~~~~~~  183 (435)
                      +|+.+.|+++..+|.....
T Consensus       176 lrl~~~g~~~~~v~~~l~~  194 (248)
T PRK10063        176 ARLYKAGYAFKKLNGLVSE  194 (248)
T ss_pred             HHHHHcCCcEEEcCceeEE
Confidence            9999999999888866554

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=99.76  E-value=2.2e-17  Score=159.56  Aligned_cols=169  Identities=15%  Similarity=0.205  Sum_probs=122.6

Q ss_pred             CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      +++|| +|||||||||+|+|.++++++.+++|++++  +..++|.|+++|+|.|++.++|||++++|+|+.++|++++.+
T Consensus        99 ~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~v--v~~~~n~Gka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~l  176 (444)
T PRK14583         99 AQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRV--IHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYL  176 (444)
T ss_pred             cCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEE--EEeCCCCCHHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHH
Confidence            34454 999999999999999999999888876444  445788999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHH----HHH--HHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650          82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN----YLT--QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS  154 (435)
Q Consensus        82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (435)
                      ++.+.+ ++.++|.|.+.......    +..+.....+.    ...  ....+ ......|++.++++++++++|+... 
T Consensus       177 v~~~~~~~~~g~v~g~~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~~~~g-~~~~~sG~~~~~rr~al~~vGg~~~-  250 (444)
T PRK14583        177 VAPLIANPRTGAVTGNPRIRTRST----LIGRVQVGEFSSIIGLIKRTQRVYG-QVFTVSGVVAAFRRRALADVGYWSP-  250 (444)
T ss_pred             HHHHHhCCCeEEEEccceecCCCc----chhhHHHHHHHHHHHHHHHHHHHhC-CceEecCceeEEEHHHHHHcCCCCC-
Confidence            998865 55777777654432221    11111110111    011  11112 2223345667899999999976543 


Q ss_pred             cCchhhHHHHHHHHhhcceeEeeee
Q psy3650         155 KGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       155 ~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      ....+|.|+..|..++|+++...|.
T Consensus       251 ~~i~ED~dl~~rl~~~G~~i~~~p~  275 (444)
T PRK14583        251 DMITEDIDISWKLQLKHWSVFFEPR  275 (444)
T ss_pred             CcccccHHHHHHHHHcCCeEEEeec
Confidence            3467899999999999998876663

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=99.76  E-value=1.2e-17  Score=148.34  Aligned_cols=171  Identities=16%  Similarity=0.203  Sum_probs=116.2

Q ss_pred             CCC-CeEEEEEeCCCCcChH-HHHHHHHHHhCCceEEEccCCCCCC-HHHHHHHHHhhcc--CCEEEEEcCCCCCCCCcH
Q psy3650           4 GNY-PYEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLG-LGTAYMHGLKYAT--GNFIIIMDADLSHHPKFI   78 (435)
Q Consensus         4 ~~~-~~EiivvDd~S~d~t~-~i~~~~~~~~~~~~i~~~~~~~n~g-~~~a~n~gl~~a~--gd~i~~lD~D~~~~~~~l   78 (435)
                      +.+ ++|||||||+|+|+|. +++++++++.+ .++.++...+|.| +++|+|.|++.+.  +|||+++|+|+.++|++|
T Consensus        24 q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~-~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l  102 (236)
T cd06435          24 LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLG-ERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVIDADYQVEPDWL  102 (236)
T ss_pred             CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhC-CcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEcCCCCcCHHHH
Confidence            444 5999999999999985 77777776543 2455555566667 5899999999986  699999999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHH-HHHHH---hCCCccccccceehhhHHHHHHhhccccc
Q psy3650          79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY-LTQLL---LRPGVSDLTGSFRLYKKQVLENLVSSCVS  154 (435)
Q Consensus        79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (435)
                      ..+++.++++++++|.+.........  ..+ .......... .....   .........|.+.++++++++++|++...
T Consensus       103 ~~l~~~~~~~~~~~v~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~~~  179 (236)
T cd06435         103 KRLVPIFDDPRVGFVQAPQDYRDGEE--SLF-KRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWDEW  179 (236)
T ss_pred             HHHHHHhcCCCeeEEecCccccCCCc--cHH-HHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCCCc
Confidence            99999997667777766432222110  111 1111111100 00000   01111223455679999999999876543


Q ss_pred             cCchhhHHHHHHHHhhcceeEeeee
Q psy3650         155 KGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       155 ~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                       .+.+|++++.|+.+.|+++...|.
T Consensus       180 -~~~eD~dl~~r~~~~G~~~~~~~~  203 (236)
T cd06435         180 -CITEDSELGLRMHEAGYIGVYVAQ  203 (236)
T ss_pred             -cccchHHHHHHHHHCCcEEEEcch
Confidence             357899999999999999877653

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=99.75  E-value=2.8e-17  Score=139.83  Aligned_cols=149  Identities=20%  Similarity=0.294  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      |+..++|||||||+|+|+|.++++++.+..+...+.+.....+.|+++++|.|++.|+|||++++|+|+.++|++|+.++
T Consensus        22 q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~  101 (182)
T cd06420          22 QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCIPHPDFIADHI  101 (182)
T ss_pred             ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCCEEEEEcCCcccCHHHHHHHH
Confidence            45567999999999999999999998775443333343445566889999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCc-hhh
Q psy3650          83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGY-VFQ  160 (435)
Q Consensus        83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~d  160 (435)
                      +.+  .+...++|.+.........                        ....++..+++|+.+.+++++... ..+ .+|
T Consensus       102 ~~~--~~~~~v~g~~~~~~~~~~~------------------------~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD  155 (182)
T cd06420         102 ELA--EPGVFLSGSRVLLNEKLTE------------------------RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGED  155 (182)
T ss_pred             HHh--CCCcEEecceeecccccce------------------------eEeccceEEEEHHHHHHhCCCCcccccCCcch
Confidence            988  3445667776544332110                        122234456677777777655432 233 579


Q ss_pred             HHHHHHHHhhcceeEee
Q psy3650         161 MEMVIRARQYNYTIGEV  177 (435)
Q Consensus       161 ~~l~~r~~~~g~~~~~~  177 (435)
                      ++++.|+.++|+....+
T Consensus       156 ~~l~~r~~~~g~~~~~~  172 (182)
T cd06420         156 SELVARLLNSGIKFRKL  172 (182)
T ss_pred             HHHHHHHHHcCCcEEEe
Confidence            99999999999665444

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>PRK10018 putative glycosyl transferase; Provisional

Probab=99.75  E-value=3.3e-17  Score=147.04  Aligned_cols=171  Identities=15%  Similarity=0.146  Sum_probs=111.0

Q ss_pred             CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      .|+..++|||||||||+|  .++++++.++....+|.++..+.|.|.+.|+|.|++.|+||||+|+|+|+.+.|++|+.+
T Consensus        29 ~Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~  106 (279)
T PRK10018         29 RQDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVF  106 (279)
T ss_pred             hCCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEECCCCCCCccHHHHH
Confidence            455556999999999984  567777776555557888888899999999999999999999999999999999999999


Q ss_pred             HHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh
Q psy3650          82 IKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ  160 (435)
Q Consensus        82 ~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  160 (435)
                      ++.+.+ ...+++++......+.....+......+........ +......   +...++.+..+...+ +.......+|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~n~i---g~~~~~~~~~~~~~~-fd~~~~~~eD  181 (279)
T PRK10018        107 LAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRL-FYKRNII---GNQVFTWAWRFKECL-FDTELKAAQD  181 (279)
T ss_pred             HHHHHhCCCccEEEccceeecCcccccccccCCCCCCCCCHHH-HHHhcCc---Cceeeehhhhhhhcc-cCCCCCcccc
Confidence            998866 566777776432222111111000000000000111 1111211   222234445554433 3344566789


Q ss_pred             HHHHHHHHhhcceeEeeee
Q psy3650         161 MEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       161 ~~l~~r~~~~g~~~~~~~~  179 (435)
                      +++++|+...|.....+|.
T Consensus       182 ydlwlrl~~~~~~~~~~~~  200 (279)
T PRK10018        182 YDIFLRMVVEYGEPWKVEE  200 (279)
T ss_pred             HHHHHHHHHhcCceEeecc
Confidence            9999999988877655543

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=99.74  E-value=2.3e-18  Score=152.14  Aligned_cols=178  Identities=21%  Similarity=0.278  Sum_probs=110.7

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC---HHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g---~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      .++||+||||+|+|+|.+.++++.+.+|..++.+++.+.|.|   ++.++|.|++.+++|||+++|+|+.++|++|..++
T Consensus        29 ~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~  108 (228)
T PF13641_consen   29 PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAARGDYILFLDDDTVLDPDWLERLL  108 (228)
T ss_dssp             HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHH
T ss_pred             CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHH
Confidence            359999999999999999999999888876677766655544   78999999999999999999999999999999999


Q ss_pred             HHHhcCCCcEEEEeeeecCCCccCcccchhhh-hchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhH
Q psy3650          83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV-SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQM  161 (435)
Q Consensus        83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  161 (435)
                      +.++++++++|.+.......... ........ ..............+.....|++.+|++++++++|++.. ....+|.
T Consensus       109 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~-~~~~eD~  186 (228)
T PF13641_consen  109 AAFADPGVGAVGGPVFPDNDRNW-LTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP-FILGEDF  186 (228)
T ss_dssp             HHHHBSS--EEEEEEEETTCCCE-EEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S-SSSSHHH
T ss_pred             HHHHhCCCCeEeeeEeecCCCCH-HHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC-CCcccHH
Confidence            99977889999987754432211 11111100 000000000001112222346788999999999976555 5566899


Q ss_pred             HHHHHHHhhcceeEeeeeEeeecc
Q psy3650         162 EMVIRARQYNYTIGEVPISFVDRV  185 (435)
Q Consensus       162 ~l~~r~~~~g~~~~~~~~~~~~r~  185 (435)
                      ++..|+.+.|+++...|.....+.
T Consensus       187 ~l~~r~~~~G~~~~~~~~~~v~~~  210 (228)
T PF13641_consen  187 DLCLRLRAAGWRIVYAPDALVYHE  210 (228)
T ss_dssp             HHHHHHHHTT--EEEEEEEEEEE-
T ss_pred             HHHHHHHHCCCcEEEECCcEEEEe
Confidence            999999999999998886554444

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.74  E-value=3.9e-18  Score=142.86  Aligned_cols=144  Identities=24%  Similarity=0.335  Sum_probs=105.8

Q ss_pred             CCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650           4 GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK   83 (435)
Q Consensus         4 ~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~   83 (435)
                      +..++|||||||||+|+|.++++++.+  ....+.++..++|.|.++++|.|++.|+++|++++|+|+.++|++|+.+++
T Consensus        24 ~~~~~eiivvdd~s~d~~~~~~~~~~~--~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~  101 (169)
T PF00535_consen   24 TDPDFEIIVVDDGSTDETEEILEEYAE--SDPNIRYIRNPENLGFSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVE  101 (169)
T ss_dssp             SGCEEEEEEEECS-SSSHHHHHHHHHC--CSTTEEEEEHCCCSHHHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHH
T ss_pred             cCCCEEEEEeccccccccccccccccc--cccccccccccccccccccccccccccceeEEEEeCCCceEcHHHHHHHHH
Confidence            456799999999999999999999976  344677777888999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcEEEEeeeecCCCccCcccchh--hhhchHHHHHHHHhCCCccccccceehhhHHHHHHhh
Q psy3650          84 LQQQENLDVVTGTRYVGTGGVYGWDFKRK--LVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLV  149 (435)
Q Consensus        84 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (435)
                      .+.+++.+++++.................  ......................+++.++++++++++|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~  169 (169)
T PF00535_consen  102 ALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEIG  169 (169)
T ss_dssp             HHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHCH
T ss_pred             HHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhhC
Confidence            99888889988887655444322211111  1112222222233344556666778999999999874

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>KOG2977|consensus

Probab=99.74  E-value=2.1e-17  Score=139.94  Aligned_cols=184  Identities=23%  Similarity=0.360  Sum_probs=145.9

Q ss_pred             CCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCC--CCC-CcHHH
Q psy3650           4 GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLS--HHP-KFIPE   80 (435)
Q Consensus         4 ~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~--~~~-~~l~~   80 (435)
                      .+..+||+||||||+|.|.+++-+++.++..-.+.++....|+|+|+|.-.|+-+++|++++|.|+|.-  +++ +.|+.
T Consensus       101 ~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~  180 (323)
T KOG2977|consen  101 KSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEKLEK  180 (323)
T ss_pred             CCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHHHHH
Confidence            346799999999999999999999997777678888889999999999999999999999999999993  332 45555


Q ss_pred             HHHHHhc--CCCcEEEEeeeecCC--CccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccC
Q psy3650          81 MIKLQQQ--ENLDVVTGTRYVGTG--GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG  156 (435)
Q Consensus        81 ~~~~~~~--~~~~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (435)
                      .+.....  ...++++|+|.....  ....+++.+.+.=-.++.+...+-.+.+.|++|||.+|+|.+...+....-.++
T Consensus       181 al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~lv~~~a~rsI~DTQcgfklftR~aa~~if~~lh~e~  260 (323)
T KOG2977|consen  181 ALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKLVWIFAIRSIRDTQCGFKLFTRAAARRIFPWLHVER  260 (323)
T ss_pred             HHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHHHHHHhcCcccccchhHHHhHHHHHHhhcchhheee
Confidence            5554432  345788898854433  122334445554444555545566778999999999999999999988888999


Q ss_pred             chhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650         157 YVFQMEMVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       157 ~~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      |.+|.|+...|.+.+..+.++++.+..-...
T Consensus       261 W~fdvEll~La~~~~ipi~ei~v~w~EIdgS  291 (323)
T KOG2977|consen  261 WAFDVELLYLAKRFTIPIKEIPVEWTEIDGS  291 (323)
T ss_pred             eeccHHHHHHHHHcCCCcEEeeeEEEEcCCc
Confidence            9999999999999999999999887655543

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=99.74  E-value=4.4e-17  Score=156.99  Aligned_cols=174  Identities=17%  Similarity=0.219  Sum_probs=118.3

Q ss_pred             CCCCC---eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650           3 EGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIP   79 (435)
Q Consensus         3 ~~~~~---~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~   79 (435)
                      +++||   +|||||||||+|+|.++++++.+++|...++..  +++.|++.|+|.|++.++||||+++|+|+.++|++++
T Consensus        73 ~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~--~~~~Gka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~  150 (439)
T TIGR03111        73 NQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYM--NSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIK  150 (439)
T ss_pred             hcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEe--CCCCCHHHHHHHHHHHccCCEEEEECCCCCcChHHHH
Confidence            34555   699999999999999999999888887655543  5678999999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCCcEEEEeeeecCCCcc-Ccccchhhhhc--hHHHHHHHHh-------CCCccccccceehhhHHHHHHh
Q psy3650          80 EMIKLQQQ-ENLDVVTGTRYVGTGGVY-GWDFKRKLVSR--GANYLTQLLL-------RPGVSDLTGSFRLYKKQVLENL  148 (435)
Q Consensus        80 ~~~~~~~~-~~~~~v~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  148 (435)
                      .+++.+.+ ++.+++.|......+... ...........  ..........       ........|++.++||++++++
T Consensus       151 ~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~v  230 (439)
T TIGR03111       151 NMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKT  230 (439)
T ss_pred             HHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHh
Confidence            99999975 445666665433211100 00000111111  0111111111       1122334466779999999999


Q ss_pred             hccccccCchhhHHHHHHHHh-hcceeEeeee
Q psy3650         149 VSSCVSKGYVFQMEMVIRARQ-YNYTIGEVPI  179 (435)
Q Consensus       149 ~~~~~~~~~~~d~~l~~r~~~-~g~~~~~~~~  179 (435)
                      |+.... ...+|+++..|+.. .|+++...|.
T Consensus       231 ggf~~~-~i~ED~~l~~rl~~~~g~kv~~~~~  261 (439)
T TIGR03111       231 QLYNSE-TVGEDTDMTFQIRELLDGKVYLCEN  261 (439)
T ss_pred             CCCCCC-CcCccHHHHHHHHHhcCCeEEECCC
Confidence            775433 45889999999864 5777665543

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=99.73  E-value=2.4e-17  Score=146.50  Aligned_cols=174  Identities=20%  Similarity=0.166  Sum_probs=113.6

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccC---CEEEEEcCCCCCCCCcHHHHH-
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG---NFIIIMDADLSHHPKFIPEMI-   82 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~g---d~i~~lD~D~~~~~~~l~~~~-   82 (435)
                      ..|||||||+|+|.+....+.     +...+.++..+.|.|+++|+|.|++.|+|   |||+++|+|+.++|++|+.++ 
T Consensus        24 ~~~iivvDn~s~~~~~~~~~~-----~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~   98 (237)
T cd02526          24 VDKVVVVDNSSGNDIELRLRL-----NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLLA   98 (237)
T ss_pred             CCEEEEEeCCCCccHHHHhhc-----cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHH
Confidence            689999999998877655433     22356667778899999999999999988   999999999999999999995 


Q ss_pred             --HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHh-CCCccccccceehhhHHHHHHhhcccccc-Cch
Q psy3650          83 --KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL-RPGVSDLTGSFRLYKKQVLENLVSSCVSK-GYV  158 (435)
Q Consensus        83 --~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  158 (435)
                        ....+++...++|+............... .............. ........++..++++++++++|++.... ..+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~  177 (237)
T cd02526          99 YKILSDKNSNIGAVGPRIIDRRTGENSPGVR-KSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFIDY  177 (237)
T ss_pred             HHHhhccCCCeEEEeeeEEcCCCCeecccee-ccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcCcc
Confidence              44433444445555544322211100000 00000000000000 00111222445689999999997665433 235


Q ss_pred             hhHHHHHHHHhhcceeEeeeeEeeeccc
Q psy3650         159 FQMEMVIRARQYNYTIGEVPISFVDRVV  186 (435)
Q Consensus       159 ~d~~l~~r~~~~g~~~~~~~~~~~~r~~  186 (435)
                      +|.+++.|+.+.|+++...|.....+..
T Consensus       178 eD~d~~~r~~~~G~~~~~~~~~~v~h~~  205 (237)
T cd02526         178 VDTEWCLRARSKGYKIYVVPDAVLKHEL  205 (237)
T ss_pred             chHHHHHHHHHcCCcEEEEcCeEEEecc
Confidence            6999999999999999998877766653

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.72  E-value=9.2e-17  Score=134.29  Aligned_cols=140  Identities=23%  Similarity=0.450  Sum_probs=113.5

Q ss_pred             CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650           5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL   84 (435)
Q Consensus         5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~   84 (435)
                      ..++||+|+||||+|.|.+.++++..     ++.++..++|.|++.++|.|++.+.++|++++|+|+.++|++++.+++.
T Consensus        24 ~~~~~iiivdd~s~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~   98 (166)
T cd04186          24 YPDFEVIVVDNASTDGSVELLRELFP-----EVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDA   98 (166)
T ss_pred             CCCeEEEEEECCCCchHHHHHHHhCC-----CeEEEecCCCcChHHHhhHHHhhCCCCEEEEECCCcEECccHHHHHHHH
Confidence            35699999999999999988887632     4555667789999999999999999999999999999999999999998


Q ss_pred             HhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccc-cCchhhHHH
Q psy3650          85 QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEM  163 (435)
Q Consensus        85 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~l  163 (435)
                      +.+.+...+++.+                                   ..+++.++++++++++++.... ..+.+|.++
T Consensus        99 ~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~  143 (166)
T cd04186          99 AEQDPDVGIVGPK-----------------------------------VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDL  143 (166)
T ss_pred             HHhCCCceEEEcc-----------------------------------CceeeEeeeHHHHHHcCCCChhhhccccHHHH
Confidence            7665434444443                                   5567889999999998654432 236789999


Q ss_pred             HHHHHhhcceeEeeeeEeeec
Q psy3650         164 VIRARQYNYTIGEVPISFVDR  184 (435)
Q Consensus       164 ~~r~~~~g~~~~~~~~~~~~r  184 (435)
                      ..|+.+.|+++...|.....+
T Consensus       144 ~~~~~~~g~~i~~~~~~~~~h  164 (166)
T cd04186         144 CLRARLAGYRVLYVPQAVIYH  164 (166)
T ss_pred             HHHHHHcCCeEEEccceEEEe
Confidence            999999999998877664443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=99.71  E-value=6.9e-17  Score=143.37  Aligned_cols=166  Identities=19%  Similarity=0.208  Sum_probs=114.6

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      ++|||||||||+|+|.+++++.. ..+.  +.++ ..++.|++.++|.|++.|++|||+++|+|+.++|++|+.+++.+.
T Consensus        28 ~~eiivvdd~s~d~~~~~l~~~~-~~~~--~~v~-~~~~~g~~~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~  103 (235)
T cd06434          28 PLEIIVVTDGDDEPYLSILSQTV-KYGG--IFVI-TVPHPGKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE  103 (235)
T ss_pred             CCEEEEEeCCCChHHHHHHHhhc-cCCc--EEEE-ecCCCChHHHHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc
Confidence            89999999999999998875432 2333  3333 467889999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEeeeecCCCccCcccchhhhhchHHH---H--HHHHhCCCccccccceehhhHHHHHHhhcccc--------
Q psy3650          87 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY---L--TQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV--------  153 (435)
Q Consensus        87 ~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  153 (435)
                      +++.++|.|.........   .............   .  .............|.+.+++++++++.+....        
T Consensus       104 ~~~v~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~  180 (235)
T cd06434         104 DPKVGGVGTNQRILRPRD---SKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMG  180 (235)
T ss_pred             CCCEeEEcCceEeecCcc---cHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcC
Confidence            677777777654433311   1111111111110   0  01111112333446678999999988643221        


Q ss_pred             -ccCchhhHHHHHHHHhhcceeEeeee
Q psy3650         154 -SKGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       154 -~~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                       .....+|.++..++.+.|+++...+.
T Consensus       181 ~~~~~~eD~~l~~~~~~~g~~~~~~~~  207 (235)
T cd06434         181 RRLNAGDDRFLTRYVLSHGYKTVYQYT  207 (235)
T ss_pred             CCCCcCchHHHHHHHHHCCCeEEEecC
Confidence             23466799999999999999877653

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=99.70  E-value=1.3e-16  Score=145.34  Aligned_cols=176  Identities=19%  Similarity=0.112  Sum_probs=114.0

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCCCCCCCcHHHHHH
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADLSHHPKFIPEMIK   83 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~~~~~~~l~~~~~   83 (435)
                      +.|||||||||+|.  +.+++..+.++  ++.++..++|.|.++|+|.|++.|   .+|||+++|+|+.++|++++.+++
T Consensus        21 ~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~   96 (281)
T TIGR01556        21 VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWK   96 (281)
T ss_pred             CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH
Confidence            47999999999765  22333333334  577777889999999999999999   589999999999999999999999


Q ss_pred             HHhcCC-CcEEEEeeeecCCCccCcccchhhhhch-HHHHHHHHhCCCccccccceehhhHHHHHHhhcccc-ccCchhh
Q psy3650          84 LQQQEN-LDVVTGTRYVGTGGVYGWDFKRKLVSRG-ANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYVFQ  160 (435)
Q Consensus        84 ~~~~~~-~~~v~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d  160 (435)
                      .+++++ ...++|++.....+....+......... .................++..++++++++++|.+.. ...+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fde~~fi~~~D  176 (281)
T TIGR01556        97 LLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVYQRLGMMDEELFIDHVD  176 (281)
T ss_pred             HHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHHHHhCCccHhhcccchH
Confidence            997654 4556666654433211111110000000 000000000001111122235899999999976443 2345679


Q ss_pred             HHHHHHHHhhcceeEeeeeEeeeccc
Q psy3650         161 MEMVIRARQYNYTIGEVPISFVDRVV  186 (435)
Q Consensus       161 ~~l~~r~~~~g~~~~~~~~~~~~r~~  186 (435)
                      .|+++|+.++|+++...|.....+..
T Consensus       177 ~e~~~R~~~~G~~i~~~~~~~~~H~~  202 (281)
T TIGR01556       177 TEWSLRAQNYGIPLYIDPDIVLEHRI  202 (281)
T ss_pred             HHHHHHHHHCCCEEEEeCCEEEEEec
Confidence            99999999999999998866555543

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=99.67  E-value=9.7e-16  Score=134.64  Aligned_cols=155  Identities=20%  Similarity=0.192  Sum_probs=106.1

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      |...++|||||||+|+|+|.+++++     +  .++++  ..+.|++.++|.|+..|+|+||+++|+|+.++|+++++++
T Consensus        24 q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~--~~~~g~~~a~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~   94 (221)
T cd02522          24 LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVI--SSPKGRARQMNAGAAAARGDWLLFLHADTRLPPDWDAAII   94 (221)
T ss_pred             ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEE--eCCcCHHHHHHHHHHhccCCEEEEEcCCCCCChhHHHHHH
Confidence            4445699999999999999988876     2  34443  3467899999999999999999999999999999999998


Q ss_pred             HHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHH
Q psy3650          83 KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQME  162 (435)
Q Consensus        83 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  162 (435)
                      ....+++..++...........    .. ....  ....  ...............++++++++.+|++.... +.+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~--~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~G~fd~~~-~~ED~d  164 (221)
T cd02522          95 ETLRADGAVAGAFRLRFDDPGP----RL-RLLE--LGAN--LRSRLFGLPYGDQGLFIRRELFEELGGFPELP-LMEDVE  164 (221)
T ss_pred             HHhhcCCcEEEEEEeeecCCcc----ch-hhhh--hccc--ceecccCCCcCCceEEEEHHHHHHhCCCCccc-cccHHH
Confidence            7775554433333322222211    11 1000  0000  00011111122335789999999998776666 788999


Q ss_pred             HHHHHHhhcceeEe
Q psy3650         163 MVIRARQYNYTIGE  176 (435)
Q Consensus       163 l~~r~~~~g~~~~~  176 (435)
                      ++.|+.+.|+++..
T Consensus       165 ~~~r~~~~G~~~~~  178 (221)
T cd02522         165 LVRRLRRRGRPALL  178 (221)
T ss_pred             HHHHHHhCCCEEEc
Confidence            99999999998754

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=99.67  E-value=8.3e-16  Score=130.75  Aligned_cols=144  Identities=19%  Similarity=0.214  Sum_probs=97.1

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc-----CCEEEEEcCCCCCCCCcHHHH
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT-----GNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~-----gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      .+|||||||||+|+|.++++++..     .++......|.|++.++|.|+..+.     +||++++|+|+.++|+++..+
T Consensus        28 ~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l  102 (183)
T cd06438          28 LYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEEL  102 (183)
T ss_pred             ccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHH
Confidence            389999999999999999887632     3444455678899999999999874     899999999999999999999


Q ss_pred             HHHHhcCCCcEEEEeeeecCCCccCcccchhhhhch---HHHHH---HHHhCCCccccccceehhhHHHHHHhhcccccc
Q psy3650          82 IKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRG---ANYLT---QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSK  155 (435)
Q Consensus        82 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (435)
                      ++.+. .+.++|.|.+.......   .+........   .....   ....+.. ....|++.+||++++++ ++. ...
T Consensus       103 ~~~~~-~~~~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~rr~~l~~-~g~-~~~  175 (183)
T cd06438         103 NARFA-AGARVVQAYYNSKNPDD---SWITRLYAFAFLVFNRLRPLGRSNLGLS-CQLGGTGMCFPWAVLRQ-APW-AAH  175 (183)
T ss_pred             HHHHh-hCCCeeEEEEeeeCCcc---CHHHHHHHHHHHHHHHHHHHHHHHcCCC-eeecCchhhhHHHHHHh-CCC-CCC
Confidence            99995 45688888765443211   2222221111   11111   1111211 22345567999999999 333 234


Q ss_pred             CchhhHH
Q psy3650         156 GYVFQME  162 (435)
Q Consensus       156 ~~~~d~~  162 (435)
                      ...+|++
T Consensus       176 ~l~ED~~  182 (183)
T cd06438         176 SLTEDLE  182 (183)
T ss_pred             CcccccC
Confidence            4455655

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=99.67  E-value=6.4e-16  Score=136.24  Aligned_cols=106  Identities=28%  Similarity=0.371  Sum_probs=88.9

Q ss_pred             ceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHH
Q psy3650         201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHG  280 (435)
Q Consensus       201 ~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g  280 (435)
                      ++||+||+||++..++++|+++..+   .   .|||||||||+|+|.++++++     +.++.  .. .+.|.+.++|.|
T Consensus         1 ~isvii~~~Ne~~~l~~~l~sl~~~---~---~eiivvD~gStD~t~~i~~~~-----~~~v~--~~-~~~g~~~~~n~~   66 (229)
T cd02511           1 TLSVVIITKNEERNIERCLESVKWA---V---DEIIVVDSGSTDRTVEIAKEY-----GAKVY--QR-WWDGFGAQRNFA   66 (229)
T ss_pred             CEEEEEEeCCcHHHHHHHHHHHhcc---c---CEEEEEeCCCCccHHHHHHHc-----CCEEE--EC-CCCChHHHHHHH
Confidence            4899999999999999999988642   1   399999999999999988753     33443  34 688999999999


Q ss_pred             HhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEe
Q psy3650         281 LKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       281 ~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      ++.|++|||+++|+|..++|++++.+...+.+++......
T Consensus        67 ~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~  106 (229)
T cd02511          67 LELATNDWVLSLDADERLTPELADEILALLATDDYDGYYV  106 (229)
T ss_pred             HHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEE
Confidence            9999999999999999999999999999987655433333

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=99.65  E-value=1.1e-15  Score=153.92  Aligned_cols=168  Identities=16%  Similarity=0.202  Sum_probs=114.3

Q ss_pred             CCCCC---eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCC-CCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcH
Q psy3650           3 EGNYP---YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFI   78 (435)
Q Consensus         3 ~~~~~---~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~-n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l   78 (435)
                      +++||   +||+|+||||+|+|.++++++       .+.++..++ +.||++++|.|+++++||||+++|+|..++|++|
T Consensus       285 ~~dYP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL  357 (852)
T PRK11498        285 GIDWPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTHEHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFL  357 (852)
T ss_pred             hccCCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCCCcchHHHHHHHHHhCCCCEEEEECCCCCCChHHH
Confidence            35665   899999999999998887764       345554444 4579999999999999999999999999999999


Q ss_pred             HHHHHHHh-cCCCcEEEEeeeecCCCccCcccc--hhhhhc--hHH-HHHHHHhCCCccccccceehhhHHHHHHhhccc
Q psy3650          79 PEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFK--RKLVSR--GAN-YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC  152 (435)
Q Consensus        79 ~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~--~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (435)
                      +.++..+. +++..+|.+.......+.......  +.....  .+. .........+.....|++.++||++++++|+..
T Consensus       358 ~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd  437 (852)
T PRK11498        358 QMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA  437 (852)
T ss_pred             HHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCC
Confidence            99998864 456677776543322211110000  000000  011 111111111222234567799999999998765


Q ss_pred             cccCchhhHHHHHHHHhhcceeEeee
Q psy3650         153 VSKGYVFQMEMVIRARQYNYTIGEVP  178 (435)
Q Consensus       153 ~~~~~~~d~~l~~r~~~~g~~~~~~~  178 (435)
                      .. ...+|.++++|+.++|+++..++
T Consensus       438 ~~-titED~dlslRL~~~Gyrv~yl~  462 (852)
T PRK11498        438 VE-TVTEDAHTSLRLHRRGYTSAYMR  462 (852)
T ss_pred             CC-ccCccHHHHHHHHHcCCEEEEEe
Confidence            43 46789999999999999988764

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=99.65  E-value=2.9e-15  Score=123.15  Aligned_cols=153  Identities=24%  Similarity=0.359  Sum_probs=123.3

Q ss_pred             EEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      |+||++|+...+..+++++.+   +.+..++++++||++++.+.+.+.++....  ..+......++.|++.++|.+++.
T Consensus         1 iii~~~~~~~~l~~~l~s~~~---~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~   75 (156)
T cd00761           1 VIIPAYNEEPYLERCLESLLA---QTYPNFEVIVVDDGSTDGTLEILEEYAKKD--PRVIRVINEENQGLAAARNAGLKA   75 (156)
T ss_pred             CEEeecCcHHHHHHHHHHHHh---CCccceEEEEEeCCCCccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHHHH
Confidence            589999999888888888765   444678999999999999999888876542  235555577899999999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHH-HhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccce
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKL-QQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSF  362 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (435)
                      +.+|+++++|+|..+.++.+..++.. ..+++.+++.+.                                       ++
T Consensus        76 ~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------------------~~  116 (156)
T cd00761          76 ARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP---------------------------------------GN  116 (156)
T ss_pred             hcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------------ch
Confidence            99999999999999999999998544 445566666665                                       56


Q ss_pred             eeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEE
Q psy3650         363 RLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIG  400 (435)
Q Consensus       363 ~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~  400 (435)
                      ++++++.++++++.... ..+.+|.+++.++.+.|+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~~  155 (156)
T cd00761         117 LLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVAF  155 (156)
T ss_pred             heeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhccccc
Confidence            79999999999765443 333689999999998887653

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=99.65  E-value=2.4e-15  Score=152.62  Aligned_cols=173  Identities=14%  Similarity=0.197  Sum_probs=116.4

Q ss_pred             CCCCC---eEEEEEeCCCCcCh--------------HHHHHHHHHHhCCceEEEccCCCC-CCHHHHHHHHHhhccCCEE
Q psy3650           3 EGNYP---YEIIVIDDGSPDGT--------------LDAAKQLQSIYGSEKIVLKPRKKK-LGLGTAYMHGLKYATGNFI   64 (435)
Q Consensus         3 ~~~~~---~EiivvDd~S~d~t--------------~~i~~~~~~~~~~~~i~~~~~~~n-~g~~~a~n~gl~~a~gd~i   64 (435)
                      +++||   +||+|+||||+|+|              .+.+++++++.   .+.++..++| .+|++++|.|+++++||||
T Consensus       156 ~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~---~v~yi~r~~n~~~KAgnLN~al~~a~gd~I  232 (713)
T TIGR03030       156 NMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL---GVNYITRPRNVHAKAGNINNALKHTDGELI  232 (713)
T ss_pred             hCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc---CcEEEECCCCCCCChHHHHHHHHhcCCCEE
Confidence            45676   89999999999998              35566776654   4555555555 4789999999999999999


Q ss_pred             EEEcCCCCCCCCcHHHHHHHHhc-CCCcEEEEeeeecCCCccCccc--chhhhhc--h-HHHHHHHHhCCCcccccccee
Q psy3650          65 IIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDF--KRKLVSR--G-ANYLTQLLLRPGVSDLTGSFR  138 (435)
Q Consensus        65 ~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~  138 (435)
                      +++|+|..++|++|++++..+++ ++..+|.+.......+......  .......  . ...........+.....|++.
T Consensus       233 l~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~  312 (713)
T TIGR03030       233 LIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAA  312 (713)
T ss_pred             EEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCcee
Confidence            99999999999999999999954 4566666654332222111100  0011100  0 111111111112222345667


Q ss_pred             hhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeeee
Q psy3650         139 LYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      ++||++++++|+... ....+|++++.|+.++|+++...+.
T Consensus       313 ~iRR~al~~iGGf~~-~~vtED~~l~~rL~~~G~~~~y~~~  352 (713)
T TIGR03030       313 VLRREALDEIGGIAG-ETVTEDAETALKLHRRGWNSAYLDR  352 (713)
T ss_pred             EEEHHHHHHcCCCCC-CCcCcHHHHHHHHHHcCCeEEEecc
Confidence            899999999987654 3457899999999999999877653

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>PRK14716 bacteriophage N4 adsorption protein B; Provisional

Probab=99.64  E-value=5.1e-15  Score=142.20  Aligned_cols=176  Identities=16%  Similarity=0.135  Sum_probs=119.6

Q ss_pred             CCCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc------cC---CEEEEEcCCC
Q psy3650           2 DEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA------TG---NFIIIMDADL   71 (435)
Q Consensus         2 ~~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a------~g---d~i~~lD~D~   71 (435)
                      .+++|| +||+|+||+|+|+|.++++++++++|+.++++.+.....||+.++|.|++.+      +|   |+++++|+|+
T Consensus        90 ~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~  169 (504)
T PRK14716         90 ATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAED  169 (504)
T ss_pred             HcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCC
Confidence            456776 9999999999999999999999999987766655555678999999999765      45   9999999999


Q ss_pred             CCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccch-hhhhchHHHH-HHH--HhCCC-ccccccceehhhHHHHH
Q psy3650          72 SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR-KLVSRGANYL-TQL--LLRPG-VSDLTGSFRLYKKQVLE  146 (435)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~-~~~~~~~~~~~~~~~~~  146 (435)
                      .++|++|..+...+  ++.++|..+.........  .+.. .......... ...  ....+ .....|...+|+|++++
T Consensus       170 ~v~Pd~Lr~~~~~~--~~~~~VQ~pv~~~~~~~~--~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe  245 (504)
T PRK14716        170 VIHPLELRLYNYLL--PRHDFVQLPVFSLPRDWG--EWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE  245 (504)
T ss_pred             CcCccHHHHHHhhc--CCCCEEecceeccCCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence            99999999876655  345666544322111110  1111 1111111000 000  01111 22234567899999999


Q ss_pred             Hh----hcc-ccccCchhhHHHHHHHHhhcceeEeeeeEe
Q psy3650         147 NL----VSS-CVSKGYVFQMEMVIRARQYNYTIGEVPISF  181 (435)
Q Consensus       147 ~~----~~~-~~~~~~~~d~~l~~r~~~~g~~~~~~~~~~  181 (435)
                      ++    |+. .......+|+++.+|+.+.|+++...|...
T Consensus       246 ~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai  285 (504)
T PRK14716        246 RLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRA  285 (504)
T ss_pred             HHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecccc
Confidence            87    222 344567899999999999999988876553

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=99.64  E-value=1.6e-15  Score=139.48  Aligned_cols=184  Identities=22%  Similarity=0.336  Sum_probs=131.0

Q ss_pred             CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCC---EEEEEcCCCCCCCCcH
Q psy3650           3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN---FIIIMDADLSHHPKFI   78 (435)
Q Consensus         3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd---~i~~lD~D~~~~~~~l   78 (435)
                      ++.++ .++++|||+|+|++.+.+++..  .|  .+.++...+|.|.+++.|.|++.|.++   |+++++.|..++|++|
T Consensus        27 ~~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l  102 (305)
T COG1216          27 AQTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLL  102 (305)
T ss_pred             cCCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccchhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHH
Confidence            34444 5566799999999998888742  23  577778999999999999999999764   9999999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeeeecCCCccCcccch---------hhhhchHHHHHHHHhCCCcc-ccccceehhhHHHHHHh
Q psy3650          79 PEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR---------KLVSRGANYLTQLLLRPGVS-DLTGSFRLYKKQVLENL  148 (435)
Q Consensus        79 ~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  148 (435)
                      +++++.+.+.+...+.|+.....+.........         .................... ...|++.++++++++++
T Consensus       103 ~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~v  182 (305)
T COG1216         103 EELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKV  182 (305)
T ss_pred             HHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHh
Confidence            999999988888888887765543221111111         00000000000000000011 24577889999999999


Q ss_pred             hccc-cccCchhhHHHHHHHHhhcceeEeeeeEeeecccceee
Q psy3650         149 VSSC-VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQ  190 (435)
Q Consensus       149 ~~~~-~~~~~~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~~~~  190 (435)
                      |+.. ....+.+|.|++.|+++.|+++..+|.....|....+.
T Consensus       183 G~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~  225 (305)
T COG1216         183 GGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK  225 (305)
T ss_pred             CCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence            7644 46777889999999999999999999887777655443

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=99.62  E-value=5e-15  Score=134.33  Aligned_cols=179  Identities=20%  Similarity=0.259  Sum_probs=117.4

Q ss_pred             CCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEc-cCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           4 GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLK-PRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         4 ~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~-~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      ....+|||||||||.+.+.+.++++.++.....++.. ......|.+.|+|.|++.|++|+|+|+|+|..++|+.++.++
T Consensus        31 ~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~  110 (281)
T PF10111_consen   31 SDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLL  110 (281)
T ss_pred             CCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHH
Confidence            3556999999999999998888888876543312221 122346999999999999999999999999999999999999


Q ss_pred             H---HHhcCCCcEEEEee-eecCCCccCcccchhhhhchHHHHH-HHHh----CCCccccccceehhhHHHHHHhhcccc
Q psy3650          83 K---LQQQENLDVVTGTR-YVGTGGVYGWDFKRKLVSRGANYLT-QLLL----RPGVSDLTGSFRLYKKQVLENLVSSCV  153 (435)
Q Consensus        83 ~---~~~~~~~~~v~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (435)
                      +   .+.+.+..++..+. +......  .......-........ ....    ........+++.+++|+.+.++|++.+
T Consensus       111 ~~~~~l~~~~~~~~~~p~~yl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE  188 (281)
T PF10111_consen  111 NHVKKLDKNPNAFLVYPCLYLSEEGS--EKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDE  188 (281)
T ss_pred             HHHHHHhcCCCceEEEeeeeccchhh--HHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCc
Confidence            9   66555444444443 2222211  0111100000001111 1111    011223345889999999999977765


Q ss_pred             cc-Cc-hhhHHHHHHHHhhcceeEeeeeEeeec
Q psy3650         154 SK-GY-VFQMEMVIRARQYNYTIGEVPISFVDR  184 (435)
Q Consensus       154 ~~-~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r  184 (435)
                      .. +| .+|.|+..|+.+.|..+...+....++
T Consensus       189 ~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~  221 (281)
T PF10111_consen  189 RFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYH  221 (281)
T ss_pred             cccCCCcchHHHHHHHHHcCCcEecChHHhccc
Confidence            43 44 689999999999999886665544433

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=4.3e-15  Score=144.63  Aligned_cols=175  Identities=24%  Similarity=0.337  Sum_probs=125.7

Q ss_pred             CCCCCC-eEEEEEeCCCCcChHHHHHHHHHHh-CCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650           2 DEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIY-GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIP   79 (435)
Q Consensus         2 ~~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~-~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~   79 (435)
                      .+++|| +||+||||+|+|+|.+++++..+++ ++.++.+. ...+.|+++++|.|+..++||+|+++|+|..++|++|.
T Consensus        78 ~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~  156 (439)
T COG1215          78 LSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP-EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALR  156 (439)
T ss_pred             HhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec-cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHH
Confidence            356777 8999999999999999999999988 45455421 26788999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHH-----HHHhCCCccccccceehhhHHHHHHhhccccc
Q psy3650          80 EMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT-----QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS  154 (435)
Q Consensus        80 ~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (435)
                      +++..+.+++...+++.+........ ..+.............     .........-..|++.+++|++++++|+ ...
T Consensus       157 ~~~~~f~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~-~~~  234 (439)
T COG1215         157 ELVSPFEDPPVGAVVGTPRIRNRPDP-SNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG-WLE  234 (439)
T ss_pred             HHHhhhcCCCeeEEeCCceeeecCCh-hhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC-CCC
Confidence            99999977766656665533322100 0111111111111111     1111112444557788999999999974 445


Q ss_pred             cCchhhHHHHHHHHhhcceeEeeee
Q psy3650         155 KGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       155 ~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      ....+|.++..++...|+++..++-
T Consensus       235 ~~i~ED~~lt~~l~~~G~~~~~~~~  259 (439)
T COG1215         235 DTITEDADLTLRLHLRGYRVVYVPE  259 (439)
T ss_pred             CceeccHHHHHHHHHCCCeEEEeec
Confidence            6667899999999999999877663

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=99.60  E-value=4.1e-15  Score=125.43  Aligned_cols=145  Identities=23%  Similarity=0.351  Sum_probs=99.8

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      |+..++|||||||+|+|.|.++++++....+. .+.++..+++.|++.++|.|++.+++||++++|+|+.++|++|+.++
T Consensus        22 q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~  100 (180)
T cd06423          22 LDYPKLEVIVVDDGSTDDTLEILEELAALYIR-RVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRLV  100 (180)
T ss_pred             CCCCceEEEEEeCCCccchHHHHHHHhccccc-eEEEEEecccCCchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHH
Confidence            44457999999999999999999988765533 35555678899999999999999999999999999999999999996


Q ss_pred             HHHhc-CCCcEEEEeeeecCCCccCcccchhhhhchHHHH-----HHHHhCCCccccccceehhhHHHHHHhhcc
Q psy3650          83 KLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL-----TQLLLRPGVSDLTGSFRLYKKQVLENLVSS  151 (435)
Q Consensus        83 ~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (435)
                      ..+.+ ++.+++.+..........   +............     .............+++.+++++++++++++
T Consensus       101 ~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ggf  172 (180)
T cd06423         101 VPFFADPKVGAVQGRVRVRNGSEN---LLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREALREVGGW  172 (180)
T ss_pred             HHhccCCCeeeEeeeEEEecCcCc---ceeccchheecceeeeeeehhheecceeecCchHHHHHHHHHHHhCCc
Confidence            66544 556666666654433210   1111110000000     000011223445567789999999999753

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=99.60  E-value=1.8e-14  Score=123.32  Aligned_cols=139  Identities=18%  Similarity=0.184  Sum_probs=91.4

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccC---CCCCCHHHHHHHHHhhcc-----------CCEEEEEcCCC
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR---KKKLGLGTAYMHGLKYAT-----------GNFIIIMDADL   71 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~---~~n~g~~~a~n~gl~~a~-----------gd~i~~lD~D~   71 (435)
                      .++|||||||||+|+|.++++ +....++  +.++..   ..+.|++.|+|.|++.++           +|||+++|+|+
T Consensus        24 ~~~eIivvdd~S~D~t~~~~~-~~~~~~~--v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~  100 (191)
T cd06436          24 PNFLVLVIDDASDDDTAGIVR-LAITDSR--VHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADG  100 (191)
T ss_pred             CCeEEEEEECCCCcCHHHHHh-heecCCc--EEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCC
Confidence            569999999999999999998 4333343  444432   357899999999999985           37999999999


Q ss_pred             CCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHH----HHHHHhCCCccccccceehhhHHHHHH
Q psy3650          72 SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY----LTQLLLRPGVSDLTGSFRLYKKQVLEN  147 (435)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (435)
                      .++|++|+.+...+.++..+++.+.........   .+...+....+..    ..............|...+||++++++
T Consensus       101 ~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~~  177 (191)
T cd06436         101 RLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHK---NLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALDG  177 (191)
T ss_pred             CcCHhHHHHHHHhhcCCceEEEeeeEEEecCCC---CHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHHH
Confidence            999999999888886566666666543332211   1221221111110    111111112223345678999999999


Q ss_pred             hhc
Q psy3650         148 LVS  150 (435)
Q Consensus       148 ~~~  150 (435)
                      +|+
T Consensus       178 vgg  180 (191)
T cd06436         178 LIG  180 (191)
T ss_pred             hhc
Confidence            944

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=1.1e-13  Score=122.19  Aligned_cols=106  Identities=35%  Similarity=0.555  Sum_probs=92.1

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      .|++||+||+||++..+..+++++.+   |.+.++|||||||||+|+|.++++++....+  .+......+|.|.+.++|
T Consensus         2 ~~~~siiip~~n~~~~l~~~l~s~~~---q~~~~~eiivvddgs~d~t~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~   76 (291)
T COG0463           2 MPKVSVVIPTYNEEEYLPEALESLLN---QTYKDFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGLGAARN   76 (291)
T ss_pred             CccEEEEEeccchhhhHHHHHHHHHh---hhhcceEEEEEeCCCCCChHHHHHHHhhhcc--eEEEeecccCCChHHHHH
Confidence            68999999999999999999988876   5555689999999999999999999977642  455555678999999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ  310 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~  310 (435)
                      .|+..+.+++++++|+|.. .++.+..+....
T Consensus        77 ~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~  107 (291)
T COG0463          77 AGLEYARGDYIVFLDADDQ-HPPELIPLVAAG  107 (291)
T ss_pred             hhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence            9999999999999999999 988888855544

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=99.53  E-value=3e-13  Score=119.94  Aligned_cols=172  Identities=9%  Similarity=0.112  Sum_probs=113.2

Q ss_pred             CCC--CeEEEEEeCCCCcChHH----HHHHHHHHhC-CceEEEccCCCCCC-HHHHHHHHHhh--ccCCEEEEEcCCCCC
Q psy3650           4 GNY--PYEIIVIDDGSPDGTLD----AAKQLQSIYG-SEKIVLKPRKKKLG-LGTAYMHGLKY--ATGNFIIIMDADLSH   73 (435)
Q Consensus         4 ~~~--~~EiivvDd~S~d~t~~----i~~~~~~~~~-~~~i~~~~~~~n~g-~~~a~n~gl~~--a~gd~i~~lD~D~~~   73 (435)
                      ++|  .+||+|+||++++....    .+.+++++++ .++++++..++|.| +++++|.++..  +++|||+++|+|..+
T Consensus        29 ~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~  108 (254)
T cd04191          29 TGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLM  108 (254)
T ss_pred             cCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCC
Confidence            455  59999999988765431    2334555554 45677777777766 57788888876  788999999999999


Q ss_pred             CCCcHHHHHHHHh-cCCCcEEEEeeeecCCCccCcccchhhhhchHHHH----HH--HHhCCCccccccceehhhHHHHH
Q psy3650          74 HPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL----TQ--LLLRPGVSDLTGSFRLYKKQVLE  146 (435)
Q Consensus        74 ~~~~l~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~  146 (435)
                      +|++|..++..+. +++..+|.+........    .+..++........    ..  ...........|...++||++++
T Consensus       109 ~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~  184 (254)
T cd04191         109 SGDTIVRLVRRMEANPRAGIIQTAPKLIGAE----TLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFM  184 (254)
T ss_pred             CHHHHHHHHHHHHhCCCEEEEeCCceeECCC----CHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHH
Confidence            9999999999996 56778887765443332    22222221111100    00  00011122233556799999998


Q ss_pred             Hhhccc-------c-ccCchhhHHHHHHHHhhcceeEeeee
Q psy3650         147 NLVSSC-------V-SKGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       147 ~~~~~~-------~-~~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      +++..+       . .....+|+++.+++.++|+++...|.
T Consensus       185 ~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~  225 (254)
T cd04191         185 EHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPD  225 (254)
T ss_pred             HhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccC
Confidence            853221       1 33467799999999999999877663

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=99.51  E-value=5.5e-13  Score=111.26  Aligned_cols=147  Identities=18%  Similarity=0.212  Sum_probs=109.2

Q ss_pred             CHHHHHHHHHhh-ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650         272 GLGTAYMHGLKY-ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL  350 (435)
Q Consensus       272 g~~~a~n~g~~~-a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
                      +|..++..+++. +++|+++++|+|..++|++|..|+.++++++.++|++.....+..    +++..+..-+........
T Consensus        17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~----~~~~~l~~~~~~~~~~~~   92 (175)
T PF13506_consen   17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPAR----GFWSRLEAAFFNFLPGVL   92 (175)
T ss_pred             hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCc----CHHHHHHHHHHhHHHHHH
Confidence            388999999998 999999999999999999999999999988999999877655433    233333322222222211


Q ss_pred             c-CCCccccccceeeecHHHHHHhhhcc-cCcccchhhHHHHHHHHCCCcEEEeeeEEeecccc-cccCCHHHHH
Q psy3650         351 L-RPGVSDLTGSFRLYKKQVLENLVSSC-VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYG-ESKLGGTEIF  422 (435)
Q Consensus       351 ~-~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~-~s~~~~~~~~  422 (435)
                      . ......+.|++++++|+.++++|+.. ....+.+|+.+..++.++|+++...|......... ....+++..+
T Consensus        93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~~~~~~s~~~~~  167 (175)
T PF13506_consen   93 QALGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVPRTLEDSFRDFF  167 (175)
T ss_pred             HHhcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccCccccccHHHHH
Confidence            1 23456688999999999999997654 35677899999999999999999999766544333 2234455433

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.45  E-value=2e-12  Score=129.72  Aligned_cols=174  Identities=12%  Similarity=0.025  Sum_probs=118.3

Q ss_pred             CCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc-------c--CCEEEEEcCCCC
Q psy3650           3 EGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-------T--GNFIIIMDADLS   72 (435)
Q Consensus         3 ~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a-------~--gd~i~~lD~D~~   72 (435)
                      +++|| +||++++|++++.|.++++++++++|+.++++.+...|.||+.++|.|+..+       .  .+.+++.|+|+.
T Consensus        88 ~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~  167 (727)
T PRK11234         88 TLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV  167 (727)
T ss_pred             hCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC
Confidence            46777 9999999999999999999999999987766666666889999999999987       3  367888999999


Q ss_pred             CCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHH------HHHHHHhCCCccccccceehh-hH--H
Q psy3650          73 HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN------YLTQLLLRPGVSDLTGSFRLY-KK--Q  143 (435)
Q Consensus        73 ~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~--~  143 (435)
                      ++|++|. +++.+.++. ++|.++......+.  ..+......-.+.      .......+..+ ...|..++| |+  +
T Consensus       168 v~pd~L~-~~~~l~~~~-~~VQ~p~~p~~~~~--~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~-~l~G~~~af~Rr~l~  242 (727)
T PRK11234        168 ISPMELR-LFNYLVERK-DLIQIPVYPFEREW--THFTSGTYIDEFAELHGKDVPVREALAGQV-PSAGVGTCFSRRAVT  242 (727)
T ss_pred             CChhHHH-HHHhhcCCC-CeEeecccCCCccH--HHHHHHHHHHHHHHHhhhhhHHHHHcCCCc-ccCCceEEEecccHH
Confidence            9999998 667775444 88887644111110  0111111101111      11112222222 334445788 55  3


Q ss_pred             HHHHhh-c-cccccCchhhHHHHHHHHhhcceeEeeeeEe
Q psy3650         144 VLENLV-S-SCVSKGYVFQMEMVIRARQYNYTIGEVPISF  181 (435)
Q Consensus       144 ~~~~~~-~-~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~~  181 (435)
                      ++.++| + ........+|+++..|+...|+++...|...
T Consensus       243 al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v  282 (727)
T PRK11234        243 ALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPV  282 (727)
T ss_pred             HHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEccccc
Confidence            566664 2 3456667889999999999999998877443

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin

Probab=99.44  E-value=1.5e-13  Score=122.29  Aligned_cols=142  Identities=16%  Similarity=0.065  Sum_probs=94.5

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHH-------HHHHHHhhccCCEEEEEcCCCCCCCCcHH
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGT-------AYMHGLKYATGNFIIIMDADLSHHPKFIP   79 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~-------a~n~gl~~a~gd~i~~lD~D~~~~~~~l~   79 (435)
                      .+|||||||||+|                        .|.|+..       ++|.|+..|+||||+++|+|+.++|++|+
T Consensus        37 ~~evivv~Dgs~d------------------------~~~gk~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~   92 (244)
T cd04190          37 KIVVCVIFDGAIK------------------------KNRGKRDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIV   92 (244)
T ss_pred             EEEEEEEeCCccc------------------------ccCcchHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHH
Confidence            4899999999999                        2334432       67888999999999999999999999999


Q ss_pred             HHHHHHhc-CCCcEEEEeeeecCCCccCcccchhhhhc------hHHHHHHHHhCCCccccccceehhhHHHHHHhhccc
Q psy3650          80 EMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSR------GANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC  152 (435)
Q Consensus        80 ~~~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (435)
                      .+++.+.. +.+.+|.|.........   .+.......      ..........+ ......|.+.+||++++++++...
T Consensus        93 ~l~~~~~~~p~vg~v~g~~~~~~~~~---~~~~~~q~~ey~~~~~~~~~~~s~~g-~~~~~~G~~~~~R~~~l~~~~~~~  168 (244)
T cd04190          93 QLYKAMDKDPEIGGVCGEIHPMGKKQ---GPLVMYQVFEYAISHWLDKAFESVFG-FVTCLPGCFSMYRIEALKGDNGGK  168 (244)
T ss_pred             HHHHHHHhCCCEEEEEeeeEEcCCcc---hhHHHhHheehhhhhhhcccHHHcCC-ceEECCCceEEEEehhhcCCcccc
Confidence            99999954 55666777654432211   111111111      00111111112 233345678899999999885432


Q ss_pred             cc-------------------cCchhhHHHHHHHHhhcceeEe
Q psy3650         153 VS-------------------KGYVFQMEMVIRARQYNYTIGE  176 (435)
Q Consensus       153 ~~-------------------~~~~~d~~l~~r~~~~g~~~~~  176 (435)
                      ..                   ....+|.++..++.+.|+++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~  211 (244)
T cd04190         169 GPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY  211 (244)
T ss_pred             ccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence            21                   1246799999999999998766

Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.

>KOG3737|consensus

Probab=99.41  E-value=8.4e-13  Score=116.76  Aligned_cols=212  Identities=16%  Similarity=0.128  Sum_probs=147.3

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCc-chHHHHHHHHHHhCCceEEEecCCCCCCHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPD-GTLDAAKQLQSIYGSEKIVLKPRKKKLGLG  274 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d-~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~  274 (435)
                      .-|..||||+.+||.-.  -+++++.+.++.+...  -|||+|||.|+. ...+.+.++...+.. .+.++.+++.-|.-
T Consensus       153 ~Lpt~SVviVFHNEGws--~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnG-lVkV~Rne~REGLI  229 (603)
T KOG3737|consen  153 NLPTSSVVIVFHNEGWS--TLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNG-LVKVFRNERREGLI  229 (603)
T ss_pred             cCCcceEEEEEecCccH--HHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcC-EEEEEecchhhhhh
Confidence            46889999999999753  3455555555554433  499999999986 567889999888876 78888899999999


Q ss_pred             HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceec-cchh-------HHHHH-HHH--
Q psy3650         275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYG-WDFK-------RKLVS-RGA--  343 (435)
Q Consensus       275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~-------~~~~~-~~~--  343 (435)
                      .|+..|...|.|++++|+|+.+.+..+|+..++.++.++...+.+...-.-+...+. .+.+       +..+. .+.  
T Consensus       230 ~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyK  309 (603)
T KOG3737|consen  230 QARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYK  309 (603)
T ss_pred             hhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheec
Confidence            999999999999999999999999999999999999764433333222111111100 0000       00000 000  


Q ss_pred             -----HHH-HHHhc-CCCc--cccccceeeecHHHHHHhhhcccCcc-c-chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         344 -----NYL-TQLLL-RPGV--SDLTGSFRLYKKQVLENLVSSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       344 -----~~~-~~~~~-~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~-~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                           ..- ..+.. ..++  +...||..++.|+.|.++|.+...-- + ++.+||..++-+.|-+|.++|-+.+.|..+
T Consensus       310 e~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVGHvYR  389 (603)
T KOG3737|consen  310 EVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVGHVYR  389 (603)
T ss_pred             cCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccchhhh
Confidence                 000 01111 1122  22467788999999999987665532 3 378999999999999999999998877655

>KOG3738|consensus

Probab=99.38  E-value=8.7e-13  Score=116.96  Aligned_cols=205  Identities=16%  Similarity=0.167  Sum_probs=142.9

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGT  275 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~  275 (435)
                      ..|..||||..+||+..  .+|+.+.+.++++..+  .|||+|||+|.|.+.  .+.+ .+.+  +++++.+++.-|.-.
T Consensus       122 dlp~TsviITfHNEARS--~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped--~~~L-~ri~--kvr~LRN~~ReGLir  194 (559)
T KOG3738|consen  122 DLPPTSVIITFHNEARS--TLLRTVVSVLNRSPEHLIHEIILVDDFSQDPED--GKLL-KRIP--KVRVLRNNEREGLIR  194 (559)
T ss_pred             CCCCceEEEEeccHHHH--HHHHHHHHHHcCChHHhhheeEEecCCCCChHH--HHHH-hhhh--eeeeecccchhhhhh
Confidence            46889999999999864  3566666667765544  599999999998653  2222 2223  678888999999999


Q ss_pred             HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCce-------------eccchhHHHHHHH
Q psy3650         276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGV-------------YGWDFKRKLVSRG  342 (435)
Q Consensus       276 a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~-------------~~~~~~~~~~~~~  342 (435)
                      .++.|...|++.++.|+|+.+....+||+.|+..++++..-+|....-.-+-..             +.|+..-++-..-
T Consensus       195 SRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF~We~~~  274 (559)
T KOG3738|consen  195 SRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSLHFKWEQMQ  274 (559)
T ss_pred             hhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcceEEEEEehhcC
Confidence            999999999999999999999999999999999998755555544332222111             1111111111111


Q ss_pred             HHHHHHH---hcCCCccccccceeeecHHHHHHhhhccc-Cccc-chhhHHHHHHHHCCCcEEEeeeEEeec
Q psy3650         343 ANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGY-VFQMEMVIRARQYNYTIGEVPISFVDR  409 (435)
Q Consensus       343 ~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~-~~D~el~lr~~~~G~~i~~~p~~~~~~  409 (435)
                      ...-.++   ......+...||..+++++.|.++|.+.. .+-+ +|..||..|.-..|..++-+|-+.+.|
T Consensus       275 ~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGH  346 (559)
T KOG3738|consen  275 LEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGH  346 (559)
T ss_pred             HHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccchhh
Confidence            1111111   11223345688899999999999976543 2333 378899999999999999999887755

>KOG3736|consensus

Probab=99.37  E-value=6e-13  Score=127.15  Aligned_cols=214  Identities=16%  Similarity=0.166  Sum_probs=150.9

Q ss_pred             CCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcch-HHHHHHHHHHhCCceEEEecCCCCCC
Q psy3650         196 DSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGT-LDAAKQLQSIYGSEKIVLKPRKKKLG  272 (435)
Q Consensus       196 ~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~~~~~~~n~g  272 (435)
                      ....|..||||+.+||...+  +++++.+.++.+...  -|||+|||.|+... ...++++.+.+..  +.++..++..|
T Consensus       138 ~~~Lp~~Svii~f~nE~~s~--llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~--v~i~r~~~R~G  213 (578)
T KOG3736|consen  138 SDKLPTTSVIIIFHNEAWST--LLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK--VRILRTKKREG  213 (578)
T ss_pred             ccccCCCceEEEEecCCCcc--hhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc--eeEEeecchhh
Confidence            34468999999999998754  344444444443322  59999999999754 6668888877765  66666788999


Q ss_pred             HHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceec-------------cchhHHHH
Q psy3650         273 LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYG-------------WDFKRKLV  339 (435)
Q Consensus       273 ~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~  339 (435)
                      .-.|+..|...|+||+++|+|+-+.....|++.+++.+..+...+|+...-.-+...+.             |....++.
T Consensus       214 LIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f~w~  293 (578)
T KOG3736|consen  214 LIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWELTFKWE  293 (578)
T ss_pred             hHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecccCccceeeeecceeEEec
Confidence            99999999999999999999999999999999999999876766666544333222111             11111110


Q ss_pred             HHHHHHHHHH---hcCCCccccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEEEeeeEEeeccccc
Q psy3650         340 SRGANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIGEVPISFVDRVYGE  413 (435)
Q Consensus       340 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~~~p~~~~~~~~~~  413 (435)
                      .--.....+.   .....-+...||.++++|+.|.++|.++.. +-++ |..||.+|.-..|.++.-+|=+.+.|...+
T Consensus       294 ~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHifRk  372 (578)
T KOG3736|consen  294 RLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIFRK  372 (578)
T ss_pred             cCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceeeeeec
Confidence            0000011111   111222334777889999999999887654 3443 899999999999999999999888876554

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=99.35  E-value=4.1e-12  Score=111.99  Aligned_cols=80  Identities=31%  Similarity=0.443  Sum_probs=68.0

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~   87 (435)
                      .|||||||||+|+|.++++++     ..+++.  . .+.|.+.++|.|+..|++|||+++|+|+.++|++++.+.+.+++
T Consensus        27 ~eiivvD~gStD~t~~i~~~~-----~~~v~~--~-~~~g~~~~~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~   98 (229)
T cd02511          27 DEIIVVDSGSTDRTVEIAKEY-----GAKVYQ--R-WWDGFGAQRNFALELATNDWVLSLDADERLTPELADEILALLAT   98 (229)
T ss_pred             CEEEEEeCCCCccHHHHHHHc-----CCEEEE--C-CCCChHHHHHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence            599999999999999999854     334543  3 78899999999999999999999999999999999999999976


Q ss_pred             CCCcEEEE
Q psy3650          88 ENLDVVTG   95 (435)
Q Consensus        88 ~~~~~v~g   95 (435)
                      ++......
T Consensus        99 ~~~~~~~~  106 (229)
T cd02511          99 DDYDGYYV  106 (229)
T ss_pred             CCCcEEEE
Confidence            65433333

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=99.31  E-value=3e-11  Score=99.01  Aligned_cols=127  Identities=24%  Similarity=0.360  Sum_probs=99.4

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ   85 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~   85 (435)
                      .++|++|+||+|++.+.+.+.++.+..  ..+..+...++.|.+.++|.|+..+.+|+++++|+|..++|++++.++...
T Consensus        25 ~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~  102 (156)
T cd00761          25 PNFEVIVVDDGSTDGTLEILEEYAKKD--PRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAEL  102 (156)
T ss_pred             cceEEEEEeCCCCccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHHHHhcCCEEEEECCCCccCccHHHHHHHHH
Confidence            469999999999999999999887642  234444577889999999999999999999999999999999999985444


Q ss_pred             -hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccC-chhhHHH
Q psy3650          86 -QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKG-YVFQMEM  163 (435)
Q Consensus        86 -~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~l  163 (435)
                       .+++.+++.+.                                       +..++++++++.++....... +.+|.++
T Consensus       103 ~~~~~~~~v~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ed~~~  143 (156)
T cd00761         103 LADPEADAVGGP---------------------------------------GNLLFRRELLEEIGGFDEALLSGEEDDDF  143 (156)
T ss_pred             hcCCCceEEecc---------------------------------------chheeeHHHHHHhCCcchHhcCCcchHHH
Confidence             33556666555                                       567899999999865543333 3667888


Q ss_pred             HHHHHhhcce
Q psy3650         164 VIRARQYNYT  173 (435)
Q Consensus       164 ~~r~~~~g~~  173 (435)
                      ..+..+.|..
T Consensus       144 ~~~~~~~g~~  153 (156)
T cd00761         144 LLRLLRGGKV  153 (156)
T ss_pred             HHHHHhhccc
Confidence            8887776654

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.28  E-value=1.5e-10  Score=114.74  Aligned_cols=171  Identities=12%  Similarity=0.030  Sum_probs=114.3

Q ss_pred             CCCCCC-eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc-------cCC--EEEEEcCCC
Q psy3650           2 DEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-------TGN--FIIIMDADL   71 (435)
Q Consensus         2 ~~~~~~-~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a-------~gd--~i~~lD~D~   71 (435)
                      .+.+|| +||+|+.+..+++|.+.+++++..+|+.++++.++..++||+.|+|.|+..+       .++  .|++.|+|+
T Consensus        95 ~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd  174 (703)
T PRK15489         95 ATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSED  174 (703)
T ss_pred             hcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCC
Confidence            356787 9999954334448899999998888877777777777799999999999886       333  499999999


Q ss_pred             CCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHH------HHHHhCCCccccccceehhhHHHH
Q psy3650          72 SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYL------TQLLLRPGVSDLTGSFRLYKKQVL  145 (435)
Q Consensus        72 ~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  145 (435)
                      .++|+.|..+ +.+.. +.+++.++......+  ...|......-.+..+      .....+..+ ...|...+|+++++
T Consensus       175 ~~~P~~L~~~-~~~~~-~~~~iQ~pV~~~~~~--~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~i-pl~Gv~~~frr~aL  249 (703)
T PRK15489        175 VLHPLELKYF-NYLLP-RKDLVQLPVLSLERK--WYEWVAGTYMDEFAEWHQKDLVVRESLTGTV-PSAGVGTCFSRRAL  249 (703)
T ss_pred             CCChhHHHHH-HhhcC-CcceeeeeeccCCCc--cccHHHHHHHHHHHHHhhhHHHHHHHcCCce-eccCcceeeeHHHH
Confidence            9999999766 55533 347777753222111  1123333221111111      111222233 23444679999999


Q ss_pred             HHh---hc--cccccCchhhHHHHHHHHhhcceeEee
Q psy3650         146 ENL---VS--SCVSKGYVFQMEMVIRARQYNYTIGEV  177 (435)
Q Consensus       146 ~~~---~~--~~~~~~~~~d~~l~~r~~~~g~~~~~~  177 (435)
                      +.+   ++  ........+|+|+.+|+.+.|++....
T Consensus       250 ~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~  286 (703)
T PRK15489        250 LALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFV  286 (703)
T ss_pred             HHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEE
Confidence            876   22  233456688999999999999998773

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=99.19  E-value=3.7e-10  Score=112.94  Aligned_cols=169  Identities=10%  Similarity=0.155  Sum_probs=112.4

Q ss_pred             CeEEEEEeCCCCcChHHH----HHHHHHHhC-CceEEEccCCCCCC-HHHHHHHHHhh--ccCCEEEEEcCCCCCCCCcH
Q psy3650           7 PYEIIVIDDGSPDGTLDA----AKQLQSIYG-SEKIVLKPRKKKLG-LGTAYMHGLKY--ATGNFIIIMDADLSHHPKFI   78 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i----~~~~~~~~~-~~~i~~~~~~~n~g-~~~a~n~gl~~--a~gd~i~~lD~D~~~~~~~l   78 (435)
                      ++|++|+||+++|++...    .++++++++ ..++.+.+.+.|.| |++++|.+++.  +++||++++|+|..++++++
T Consensus       159 ~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L  238 (691)
T PRK05454        159 HFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTL  238 (691)
T ss_pred             CEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHH
Confidence            499999999999987643    345666653 34677765555554 78889999988  56799999999999999999


Q ss_pred             HHHHHHHh-cCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHH-----h-CCCccccccceehhhHHHHHHhhcc
Q psy3650          79 PEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL-----L-RPGVSDLTGSFRLYKKQVLENLVSS  151 (435)
Q Consensus        79 ~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~  151 (435)
                      .+++..++ ++++.+|.+........    .+..+.............     . ..+.....|...++|++++.+.++-
T Consensus       239 ~~lv~~m~~dP~vGlVQt~~~~~n~~----slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~gl  314 (691)
T PRK05454        239 VRLVRLMEANPRAGLIQTLPVAVGAD----TLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGL  314 (691)
T ss_pred             HHHHHHHhhCcCEEEEeCCccCcCCC----CHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCC
Confidence            99999996 46778887654433322    222222221111110000     0 0011223345568999999876321


Q ss_pred             -------c-cccCchhhHHHHHHHHhhcceeEeeee
Q psy3650         152 -------C-VSKGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       152 -------~-~~~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                             . ......+|++...++.+.|+++..+|.
T Consensus       315 p~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd  350 (691)
T PRK05454        315 PPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPD  350 (691)
T ss_pred             ccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc
Confidence                   1 234567799999999999999887764

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2

Probab=99.17  E-value=3.1e-10  Score=97.32  Aligned_cols=138  Identities=20%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             EEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHH---HHHHHHHHHhcCCCccccccceee
Q psy3650         288 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVS---RGANYLTQLLLRPGVSDLTGSFRL  364 (435)
Q Consensus       288 ~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
                      ||+++|+|+.++|+.+.+++..+++++++++.+.....+.+.. .........   ...........+ ......|++.+
T Consensus         1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~   78 (193)
T PF13632_consen    1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSL-LTRLQDFEYAISHGLSRLSQSSLG-RPLFLSGSGML   78 (193)
T ss_pred             CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCCh-hheeehhhhhhhhhhhHHHHHhcC-CCccccCccee
Confidence            6899999999999999999999987789999998877543211 001111111   011111111222 23346788899


Q ss_pred             ecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC-CHHHHHHHHHH
Q psy3650         365 YKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL-GGTEIFQFAKA  427 (435)
Q Consensus       365 ~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~  427 (435)
                      +++++++++++........||.|++.|+.++|+++.++|....++....+-. -+++..|+...
T Consensus        79 ~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g  142 (193)
T PF13632_consen   79 FRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRRWARG  142 (193)
T ss_pred             eeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHHHHhh
Confidence            9999999997655456667999999999999999999998865554333322 35667777666

>KOG2547|consensus

Probab=99.15  E-value=1.9e-10  Score=101.68  Aligned_cols=199  Identities=16%  Similarity=0.152  Sum_probs=141.3

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC---HH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG---LG  274 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g---~~  274 (435)
                      .-|.|||+.|.-.-++++-.-+   +.++...|+.+|++++-+.++|+..+.++++.+++|++...++-..+..|   |-
T Consensus        83 ~LPgVSiikPl~G~d~nl~~Nl---esffts~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKI  159 (431)
T KOG2547|consen   83 KLPGVSIIKPLKGVDPNLYHNL---ESFFTSQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKI  159 (431)
T ss_pred             CCCCceEEeecccCCchhHHhH---HHHHhhccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhh
Confidence            4689999999999988765544   44555678899999999999999999999999999999888777766777   44


Q ss_pred             HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEECCCceeccchhHHHHHH-HHHHHHHHhcC
Q psy3650         275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLVSR-GANYLTQLLLR  352 (435)
Q Consensus       275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  352 (435)
                      .++--|.+.|+.|+|++.|+|..+.||.+..|...+.+ .+.+.|++-+...+.+...    ..+-.. +...-.+..+.
T Consensus       160 nN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~----atle~~~fgTsh~r~yl~  235 (431)
T KOG2547|consen  160 NNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFD----ATLEQVYFGTSHPRIYLS  235 (431)
T ss_pred             hccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccch----hhhhheeeccCCceEEEc
Confidence            67778889999999999999999999999999998863 4567888777665433111    111110 00000111111


Q ss_pred             CCc---cccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEee
Q psy3650         353 PGV---SDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       353 ~~~---~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      .++   .-.+|...++|++++.+-|+.... .-..+|.-+.-.+...|+|-....
T Consensus       236 ~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist  290 (431)
T KOG2547|consen  236 GNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAIST  290 (431)
T ss_pred             cccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence            111   112444468999999998765433 333577777777888888865443

>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B

Probab=99.12  E-value=2.9e-10  Score=98.24  Aligned_cols=178  Identities=16%  Similarity=0.312  Sum_probs=93.4

Q ss_pred             eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHH
Q psy3650         202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGL  281 (435)
Q Consensus       202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~  281 (435)
                      ||||++ +|.+..+++++++|.+.   ..++.+.|-+++                          .....+.+.+.|.|+
T Consensus         1 isiI~c-~n~~~~~~~~~~~i~~~---~~~~~~~i~i~~--------------------------~~~~~s~~~~yN~a~   50 (217)
T PF13712_consen    1 ISIIIC-VNDEELYEECLRSIKRL---IGPPGELIEIDN--------------------------VRNAKSMAAAYNEAM   50 (217)
T ss_dssp             EEEEEE-ES-HHHHHHHHHHHHHT---T--TEEEEEEE---------------------------SSS-S-TTTHHHHHG
T ss_pred             CEEEEE-ECCHHHHHHHHHHHHhh---CCCCceEEEEec--------------------------cCCCcCHHHHHHHHH
Confidence            355554 45555577788777663   234455554432                          223457789999999


Q ss_pred             hhccCCEEEEEeCCCC-CCCccHHHHHHHH-hcCCCceEE--eeeEECCCce-eccc--------hhHHHHHHHHHHHHH
Q psy3650         282 KYATGNFIIIMDADLS-HHPKFIPEMIKLQ-QQENLDVVT--GTRYVGTGGV-YGWD--------FKRKLVSRGANYLTQ  348 (435)
Q Consensus       282 ~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~-~~~~~~~v~--~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~  348 (435)
                      +.|+++|++|++.|.. .+++++..++..+ ++++.+++.  |....+..+. +..+        ..+............
T Consensus        51 ~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~  130 (217)
T PF13712_consen   51 EKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWESPNKVGKVREYGRIMHGHGPNSAGE  130 (217)
T ss_dssp             GG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS---EEEEEETTEEEE----E-------
T ss_pred             HhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCCCCCccccccccccccccccccccccccccccc
Confidence            9999999999999997 5789999999999 555554443  4443332221 0000        001011111111111


Q ss_pred             H-------hcCCCccccccceeeecHHHHHHhhhcccC--ccc-chhhHHHHHHHHCCCcEEEeeeEEeeccccc
Q psy3650         349 L-------LLRPGVSDLTGSFRLYKKQVLENLVSSCVS--KGY-VFQMEMVIRARQYNYTIGEVPISFVDRVYGE  413 (435)
Q Consensus       349 ~-------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~  413 (435)
                      .       ....++..+-|.+++.+++++    ++.+.  .+| ++|+++|++++++|+++...|....|...|.
T Consensus       131 ~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~~~~~H~s~g~  201 (217)
T PF13712_consen  131 VRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPPPWCIHFSGGS  201 (217)
T ss_dssp             ------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EEEE-----EE-S---
T ss_pred             ccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEEEecCceEEEcCCCC
Confidence            1       123445567899999999999    23333  566 5899999999999999977776555555444

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.09  E-value=3.4e-10  Score=99.70  Aligned_cols=80  Identities=34%  Similarity=0.552  Sum_probs=68.1

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      |+..++|||||||||+|+|.++++++.+..  .++.......|.|.+.++|.|+..+.|++++++|+|+. .+..+..+.
T Consensus        28 q~~~~~eiivvddgs~d~t~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~  104 (291)
T COG0463          28 QTYKDFEIIVVDDGSTDGTTEIAIEYGAKD--VRVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQ-HPPELIPLV  104 (291)
T ss_pred             hhhcceEEEEEeCCCCCChHHHHHHHhhhc--ceEEEeecccCCChHHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHH
Confidence            444448999999999999999999998754  24555556889999999999999999999999999999 999888855


Q ss_pred             HHH
Q psy3650          83 KLQ   85 (435)
Q Consensus        83 ~~~   85 (435)
                      ...
T Consensus       105 ~~~  107 (291)
T COG0463         105 AAG  107 (291)
T ss_pred             HHh
Confidence            554

>KOG3738|consensus

Probab=99.08  E-value=9.5e-11  Score=104.23  Aligned_cols=174  Identities=18%  Similarity=0.210  Sum_probs=117.4

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~   87 (435)
                      -|||+|||+|+|.+.  .+.+.+ .|  +|.++++.++.|.-.++++|...|++.++.|||+.+....+||+.|++.+.+
T Consensus       157 ~EiILVDD~S~Dped--~~~L~r-i~--kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvae  231 (559)
T KOG3738|consen  157 HEIILVDDFSQDPED--GKLLKR-IP--KVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAE  231 (559)
T ss_pred             heeEEecCCCCChHH--HHHHhh-hh--eeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhh
Confidence            799999999998654  333322 23  6788889999999999999999999999999999999999999999999966


Q ss_pred             CCCcEEEEee---------------eecCCCccCcccchhhhhchHHHHHHH---HhCCCccccccceehhhHHHHHHhh
Q psy3650          88 ENLDVVTGTR---------------YVGTGGVYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLV  149 (435)
Q Consensus        88 ~~~~~v~g~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  149 (435)
                      +...+|..--               ..+++  +.|...-++-......-...   .....-+...||.++++++.|+.+|
T Consensus       232 d~trvVsPiiDvIn~dnf~Y~~asadLrGG--FDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LG  309 (559)
T KOG3738|consen  232 DTTRVVSPIIDVINLDNFSYVGASADLRGG--FDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELG  309 (559)
T ss_pred             cccceeecccccccccccccccchhhhcCC--cceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhc
Confidence            5544442211               11111  12221111111100111111   1122335557899999999999997


Q ss_pred             cccc-ccCc-hhhHHHHHHHHhhcceeEeeeeEeeecccce
Q psy3650         150 SSCV-SKGY-VFQMEMVIRARQYNYTIGEVPISFVDRVVFT  188 (435)
Q Consensus       150 ~~~~-~~~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~~  188 (435)
                      .... ..-| ++-.|+.+|...+|..+.-+|...+.+.+.+
T Consensus       310 kyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHVFRk  350 (559)
T KOG3738|consen  310 KYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHVFRK  350 (559)
T ss_pred             ccCccccccCCcceEEEEEEEeeCCeeEEEeccchhhhhhc
Confidence            6543 3333 3348888899999999998888766666544

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=99.07  E-value=1.1e-09  Score=91.41  Aligned_cols=129  Identities=19%  Similarity=0.225  Sum_probs=96.0

Q ss_pred             CHHHHHHHHHhh-ccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHH
Q psy3650          47 GLGTAYMHGLKY-ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL  125 (435)
Q Consensus        47 g~~~a~n~gl~~-a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (435)
                      +|..++..|++. |++|+++++|+|..++|++|..++..+++++.++|.+.........    +...+..-........+
T Consensus        17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~----~~~~l~~~~~~~~~~~~   92 (175)
T PF13506_consen   17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARG----FWSRLEAAFFNFLPGVL   92 (175)
T ss_pred             hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcC----HHHHHHHHHHhHHHHHH
Confidence            688999999998 9999999999999999999999999998888999998766544332    22222111111111111


Q ss_pred             h-CCCccccccceehhhHHHHHHhhcccc-ccCchhhHHHHHHHHhhcceeEeeee
Q psy3650         126 L-RPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      . ........|+++++||+.++++|+... .....+|+.+..++.+.|+++...+.
T Consensus        93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~  148 (175)
T PF13506_consen   93 QALGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPY  148 (175)
T ss_pred             HHhcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcch
Confidence            1 224455668889999999999966543 55668899999999999999877663

>KOG3736|consensus

Probab=98.99  E-value=4.4e-10  Score=107.78  Aligned_cols=178  Identities=18%  Similarity=0.175  Sum_probs=123.4

Q ss_pred             eEEEEEeCCCCcCh-HHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           8 YEIIVIDDGSPDGT-LDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         8 ~EiivvDd~S~d~t-~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      -|||+|||+|+..- ...++++.+.++.  +++++...+.|.-.|+..|...|+||.++|+|+-.....+||+.+++.+.
T Consensus       175 kEIiLVdD~S~~~~l~~~Ld~y~k~~~~--v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~  252 (578)
T KOG3736|consen  175 KEIILVDDFSDRDHLKDKLEEYVKRFSK--VRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIA  252 (578)
T ss_pred             EEEEEeecCcchhhhhhhhHHHHhhhcc--eeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhh
Confidence            69999999997764 4557777776654  66667888999999999999999999999999999999999999999997


Q ss_pred             cCCCcEEEEeeeecCCC-------------ccCcccchhhhhchHHHHHHH---HhCCCccccccceehhhHHHHHHhhc
Q psy3650          87 QENLDVVTGTRYVGTGG-------------VYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSFRLYKKQVLENLVS  150 (435)
Q Consensus        87 ~~~~~~v~g~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (435)
                      ++...+|......-...             .+.|...-+....-.......   ......+...||.++++|+.|..+|.
T Consensus       253 ~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~  332 (578)
T KOG3736|consen  253 EDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGS  332 (578)
T ss_pred             hcCceeecceEEeecCcCceecccCccceeeeecceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccC
Confidence            66655543321111111             111211111100000111111   11223455568899999999999976


Q ss_pred             ccc-ccCc-hhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650         151 SCV-SKGY-VFQMEMVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       151 ~~~-~~~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      ... ...| ++..||.+|+..+|.++..+|...+.+.+.
T Consensus       333 yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHifR  371 (578)
T KOG3736|consen  333 YDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIFR  371 (578)
T ss_pred             ccccccccChhhceeeEEEeccCCeEEecCccceeeeee
Confidence            543 3333 345999999999999999999887777754

>KOG3737|consensus

Probab=98.92  E-value=2.4e-09  Score=95.24  Aligned_cols=179  Identities=18%  Similarity=0.178  Sum_probs=122.3

Q ss_pred             eEEEEEeCCCCcC-hHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           8 YEIIVIDDGSPDG-TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         8 ~EiivvDd~S~d~-t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      -|||+|||-|+.. ..+-+.++...+.. .|++++++++-|.-.|+..|.+.|.|+.++|||+.+.+.-+|+..+++++.
T Consensus       188 ~eivlvDDfSdKehLkekLDeYv~~fnG-lVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~  266 (603)
T KOG3737|consen  188 AEIVLVDDFSDKEHLKEKLDEYVKLFNG-LVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPIS  266 (603)
T ss_pred             heEEEeccCCccHHHHHHHHHHHHHhcC-EEEEEecchhhhhhhhhccchhhccccEEEEEecceeeecccccccccccc
Confidence            7999999999654 45777777776644 688888999999999999999999999999999999999999999999996


Q ss_pred             cCCCcEEEEe-----------eeecCCCc------cCcccchhh---hhchHHHHHHHHhCCCccccccceehhhHHHHH
Q psy3650          87 QENLDVVTGT-----------RYVGTGGV------YGWDFKRKL---VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE  146 (435)
Q Consensus        87 ~~~~~~v~g~-----------~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (435)
                      .+...+.+.-           +...+.++      +.|....+-   ..+..............+...||.+++.|+.|.
T Consensus       267 rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~  346 (603)
T KOG3737|consen  267 RDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFF  346 (603)
T ss_pred             cCceEEEEeeeeeecCCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHH
Confidence            5543332211           01111111      111111111   111111111111233445557889999999999


Q ss_pred             Hhhcccc-ccCch-hhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650         147 NLVSSCV-SKGYV-FQMEMVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       147 ~~~~~~~-~~~~~-~d~~l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      ++|.... ..-|+ +-+|+.++..++|.++..+|...+.+.+.
T Consensus       347 ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVGHvYR  389 (603)
T KOG3737|consen  347 ELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVGHVYR  389 (603)
T ss_pred             HhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccchhhh
Confidence            9966543 33343 34888889999999999999886666654

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

Probab=98.91  E-value=1.1e-08  Score=92.96  Aligned_cols=186  Identities=18%  Similarity=0.207  Sum_probs=115.2

Q ss_pred             eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC----CC-------
Q psy3650         202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK----KK-------  270 (435)
Q Consensus       202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~----~n-------  270 (435)
                      +.|+|++||+.+.++++|++|.++. ....+.+|+|.+||+.+++.+.++.+..     .+.++.+.    .|       
T Consensus         2 ~PVlv~ayNRp~~l~r~LesLl~~~-p~~~~~~liIs~DG~~~~~~~~v~~~~~-----~i~~i~~~~~~~~~~~~~~~~   75 (334)
T cd02514           2 IPVLVIACNRPDYLRRMLDSLLSYR-PSAEKFPIIVSQDGGYEEVADVAKSFGD-----GVTHIQHPPISIKNVNPPHKF   75 (334)
T ss_pred             cCEEEEecCCHHHHHHHHHHHHhcc-ccCCCceEEEEeCCCchHHHHHHHhhcc-----ccEEEEcccccccccCccccc
Confidence            5799999999999999999997742 1445789999999999888887777631     22222221    12       


Q ss_pred             ---CCHHH----HHHHHHhhccCCEEEEEeCCCCCCCcc---HHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHH
Q psy3650         271 ---LGLGT----AYMHGLKYATGNFIIIMDADLSHHPKF---IPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVS  340 (435)
Q Consensus       271 ---~g~~~----a~n~g~~~a~~d~v~~~d~D~~~~~~~---l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  340 (435)
                         .+.+.    |+|.++...++++++++++|..+.|++   +++++..+++.+.-.+++.-. .++...   .....  
T Consensus        76 ~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-dnG~~~---~~~~~--  149 (334)
T cd02514          76 QGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-DNGKEH---FVDDT--  149 (334)
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-cCCccc---ccCCC--
Confidence               12233    889999888899999999999999994   466666666544333333222 111100   00000  


Q ss_pred             HHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHH--HHHCCCcEEEeeeEEeeccc
Q psy3650         341 RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIR--ARQYNYTIGEVPISFVDRVY  411 (435)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr--~~~~G~~i~~~p~~~~~~~~  411 (435)
                            ....+...+  ..|...|+.|+.++++.. ....   .|+|+.+|  .+++|-......++...+.+
T Consensus       150 ------~~~lyrs~f--f~glGWml~r~~W~e~~~-~wp~---~~WD~w~R~~~~rkgr~cirPeisRt~~~g  210 (334)
T cd02514         150 ------PSLLYRTDF--FPGLGWMLTRKLWKELEP-KWPK---AFWDDWMRLPEQRKGRECIRPEISRTYHFG  210 (334)
T ss_pred             ------cceEEEecC--CCchHHHHHHHHHHHhCC-CCCC---CChHHhhcchhhhcCCccccCCcchheecc
Confidence                  011112222  122225889999999822 2222   26677776  57777766666666666543

Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=98.67  E-value=1.3e-06  Score=74.21  Aligned_cols=153  Identities=13%  Similarity=0.121  Sum_probs=105.8

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHH
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMH  279 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~  279 (435)
                      .+++||||.+++.+.|..++..+...+......+.|+|+.--                         ....+.+|..+|.
T Consensus         2 ~~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~-------------------------~~~~FNR~~llNv   56 (219)
T cd00899           2 HKVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQV-------------------------GNFRFNRAKLLNV   56 (219)
T ss_pred             cceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEec-------------------------CCccchhhhhhhH
Confidence            479999999999999999999999888877777788777411                         1123466788888


Q ss_pred             HHhhcc----CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCc
Q psy3650         280 GLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGV  355 (435)
Q Consensus       280 g~~~a~----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (435)
                      |+..|.    .+++++-|-|..+..+.+.  . .+.+.+.-+..+.-                         ......++
T Consensus        57 G~~~a~k~~~~dc~i~hDVDllP~~~~~~--y-~~~~~p~H~s~~~~-------------------------~~~~~lpy  108 (219)
T cd00899          57 GFLEALKDGDWDCFIFHDVDLLPENDRNL--Y-GCEEGPRHLSVPLD-------------------------KFHYKLPY  108 (219)
T ss_pred             HHHHHhhcCCccEEEEecccccccCcccc--c-cCCCCCeEEEEeec-------------------------ccccccCc
Confidence            887763    4788888888876666533  1 22222211111110                         01111222


Q ss_pred             cccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEEEeeeE
Q psy3650         356 SDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       356 ~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      ...-||.++++++.|.+++|+++. .+++ ||.||..|+..+|+++..++..
T Consensus       109 ~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~  160 (219)
T cd00899         109 KTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGD  160 (219)
T ss_pred             ccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCc
Confidence            344678899999999999776543 4665 9999999999999999988853

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2

Probab=98.64  E-value=7.3e-07  Score=85.78  Aligned_cols=228  Identities=16%  Similarity=0.186  Sum_probs=139.3

Q ss_pred             cceEEEEeccCCCC-ChHHHHHHHHHHhhcCCCCeEEEEEeCC------CCcchHHHHHHHHHH----------------
Q psy3650         200 NKYTVLLPTYNEKE-NLPIIVYLITKYMDEGNYPYEIIVIDDG------SPDGTLDAAKQLQSI----------------  256 (435)
Q Consensus       200 ~~isivip~~n~~~-~l~~~l~~l~~~~~~~~~~~eiivvdd~------s~d~t~~~~~~~~~~----------------  256 (435)
                      +.+-..+|+|||.+ .|+++|+|+... +.++..--|+||-||      .+..|.+++.+....                
T Consensus        25 ~~~i~~v~cy~E~~~~l~~tldsl~~~-~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~  103 (527)
T PF03142_consen   25 KFVICLVPCYSEGEEELRTTLDSLATT-DYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSL  103 (527)
T ss_pred             ceEEEEEccccCChHHHHHHHHHHHhc-CCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEe
Confidence            45677999999854 778888888652 333334445555554      455778887766441                


Q ss_pred             ------------------hCC-----------c-eEEEec----------CCCCCCHHHHHHHHHhh-------------
Q psy3650         257 ------------------YGS-----------E-KIVLKP----------RKKKLGLGTAYMHGLKY-------------  283 (435)
Q Consensus       257 ------------------~~~-----------~-~i~~~~----------~~~n~g~~~a~n~g~~~-------------  283 (435)
                                        +..           + -++++.          .++|.||--..-..+..             
T Consensus       104 ~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~  183 (527)
T PF03142_consen  104 GEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPL  183 (527)
T ss_pred             ccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchH
Confidence                              001           1 123333          47788876322221111             


Q ss_pred             ----------------ccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCce-e--ccchhHHHHHHHH
Q psy3650         284 ----------------ATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGV-Y--GWDFKRKLVSRGA  343 (435)
Q Consensus       284 ----------------a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~-~--~~~~~~~~~~~~~  343 (435)
                                      ...||++.+|+|+.+.|+.+.+|+..+. +++...++|.-...+.+. +  -.+.+....+...
T Consensus       184 ~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish~l  263 (527)
T PF03142_consen  184 ELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISHHL  263 (527)
T ss_pred             HHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHHHH
Confidence                            1239999999999999999999999985 667788888543433321 1  1122333344444


Q ss_pred             HHHHHHhcCCCccccccceeeecHHHHHH-----------------hhhcc------cC-cccchhhHHHHHHHHC--CC
Q psy3650         344 NYLTQLLLRPGVSDLTGSFRLYKKQVLEN-----------------LVSSC------VS-KGYVFQMEMVIRARQY--NY  397 (435)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----------------~~~~~------~~-~~~~~D~el~lr~~~~--G~  397 (435)
                      .......+| .+.-+.|+|.++|-++.+.                 .....      .. ..++||-.|+..+.+.  |+
T Consensus       264 ~Ka~Es~fG-~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~~~  342 (527)
T PF03142_consen  264 QKAFESVFG-SVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFPGY  342 (527)
T ss_pred             HHHHHHHhC-ceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCCCc
Confidence            444444555 5667789999998877665                 11100      01 2467999999888887  88


Q ss_pred             cEEEeeeEEeecccccccCC-HHHHHHHHHHHH
Q psy3650         398 TIGEVPISFVDRVYGESKLG-GTEIFQFAKALL  429 (435)
Q Consensus       398 ~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~  429 (435)
                      |+.++|.+........+-.- +.+..||+.+.+
T Consensus       343 k~~y~~~A~a~T~aP~t~~vflsQRRRWinSTi  375 (527)
T PF03142_consen  343 KTEYVPSAVAYTDAPETFSVFLSQRRRWINSTI  375 (527)
T ss_pred             eEEEcccccccccCCccHHHHHHHhhhccchhH
Confidence            99999988766543333222 455666665543

4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2

Probab=98.50  E-value=8.8e-07  Score=75.81  Aligned_cols=113  Identities=22%  Similarity=0.292  Sum_probs=78.8

Q ss_pred             EEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHH------HHHHHHhCCCccccccc
Q psy3650          63 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGAN------YLTQLLLRPGVSDLTGS  136 (435)
Q Consensus        63 ~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  136 (435)
                      ||+++|+|+.++|++++++++.+++++++++.+.......+    .+..+.......      .......+ ......|+
T Consensus         1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~   75 (193)
T PF13632_consen    1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRG----SLLTRLQDFEYAISHGLSRLSQSSLG-RPLFLSGS   75 (193)
T ss_pred             CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCC----ChhheeehhhhhhhhhhhHHHHHhcC-CCccccCc
Confidence            78999999999999999999999866889998887654222    122222211111      11111112 22334577


Q ss_pred             eehhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650         137 FRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~  180 (435)
                      +.++++++++++++........+|.+++.|+.++|+++..+|..
T Consensus        76 ~~~~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~  119 (193)
T PF13632_consen   76 GMLFRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDA  119 (193)
T ss_pred             ceeeeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEeccc
Confidence            78999999999965544666778999999999999998877654

>PLN02893 Cellulose synthase-like protein

Probab=98.43  E-value=3.8e-06  Score=83.28  Aligned_cols=170  Identities=12%  Similarity=0.015  Sum_probs=107.0

Q ss_pred             eEEEecCCCCC-----CHHHHHHHHHhh----ccCCEEEEEeCCCC-CCCccHHHHHHHHhcC----CCceEEeeeEECC
Q psy3650         261 KIVLKPRKKKL-----GLGTAYMHGLKY----ATGNFIIIMDADLS-HHPKFIPEMIKLQQQE----NLDVVTGTRYVGT  326 (435)
Q Consensus       261 ~i~~~~~~~n~-----g~~~a~n~g~~~----a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~----~~~~v~~~~~~~~  326 (435)
                      .++++.++++.     -|+.|+|.+++.    ++|+||+.+|+|.. ..|+.+.+.+..+.++    +.+.|+.+....+
T Consensus       265 ~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~  344 (734)
T PLN02893        265 NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHG  344 (734)
T ss_pred             ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccC
Confidence            56677777653     388999999996    68999999999998 5789999999988764    4677776665443


Q ss_pred             CceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHH---------Hhh-----------------------
Q psy3650         327 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE---------NLV-----------------------  374 (435)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~-----------------------  374 (435)
                      -...  ..+......++.......-+..-....|...++||+++-         ++.                       
T Consensus       345 i~~~--D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  422 (734)
T PLN02893        345 INKN--DIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALAHH  422 (734)
T ss_pred             CCcC--CCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHhhh
Confidence            2111  112222222333333333333333333344589999993         110                       


Q ss_pred             ---h-c-----------ccCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccC----CHHHHHHHHHHHHHHhh
Q psy3650         375 ---S-S-----------CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKL----GGTEIFQFAKALLYLFA  433 (435)
Q Consensus       375 ---~-~-----------~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~----~~~~~~~~~~~~~~~f~  433 (435)
                         + +           .......||+...++++.+|+|..|+.-.... ..|.+-.    .+.+..|++...++.++
T Consensus       423 v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~a-f~G~aP~~l~~~l~Q~~RWa~G~lqI~~  499 (734)
T PLN02893        423 VAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPA-FLGDSPINLHDVLNQQKRWSVGLLEVAF  499 (734)
T ss_pred             ccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchh-hccCCCCCHHHHHHHHHHHHhhhHHHHh
Confidence               0 0           01122369999999999999999997532111 1233222    26888999999888875

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=98.40  E-value=2.3e-05  Score=66.70  Aligned_cols=191  Identities=9%  Similarity=0.028  Sum_probs=110.2

Q ss_pred             CcceEEEEeccCCCCCh---HHHHHHH--HHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650         199 KNKYTVLLPTYNEKENL---PIIVYLI--TKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL  273 (435)
Q Consensus       199 ~~~isivip~~n~~~~l---~~~l~~l--~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~  273 (435)
                      +++++++||+--.++.-   .+.+...  .+. -++....++|++++.+.-+  ..++.+.+..+.+...-...++.+..
T Consensus         1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~-fts~~~~~vi~~~~~~~~d--~~i~~~i~~~~~~~yl~~~s~~~F~s   77 (346)
T COG4092           1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKV-FTSSDITMVICLRAHEVMD--RLIRSYIDPMPRVLYLDFGSPEPFAS   77 (346)
T ss_pred             CCCcceEeecchhhccchhHHHHHhhHhhhhh-ccccccEEEEEEecchhHH--HHHHHHhccccceEEEecCCCccccc
Confidence            36788999987544322   2223211  111 2455678999998877433  55667766666544444433333333


Q ss_pred             -HHHHHHHHhhcc----CCEEEEEeCCCCCCCccHHHHHHHHh----cCCC--ceEEeeeEECCCceeccchhHHHHHHH
Q psy3650         274 -GTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQ----QENL--DVVTGTRYVGTGGVYGWDFKRKLVSRG  342 (435)
Q Consensus       274 -~~a~n~g~~~a~----~d~v~~~d~D~~~~~~~l~~~~~~~~----~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~  342 (435)
                       +...|.|+.++.    +++|+|+|.|+..+.+...+|+.-..    +..+  -+|.+.........   .......+.+
T Consensus        78 ~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~---~v~f~~~d~f  154 (346)
T COG4092          78 ETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADT---QVFFDVEDMF  154 (346)
T ss_pred             hhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhh---hHHHHHHHHh
Confidence             678888888886    89999999999999888888885332    1222  33444443332211   1111122222


Q ss_pred             HHHH------HHHhcCCC-ccccccceeeecHHHHHHhhhcccCc-cc-chhhHHHHHHHHC
Q psy3650         343 ANYL------TQLLLRPG-VSDLTGSFRLYKKQVLENLVSSCVSK-GY-VFQMEMVIRARQY  395 (435)
Q Consensus       343 ~~~~------~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-~~-~~D~el~lr~~~~  395 (435)
                      ....      .......+ +.....+..++.|..|-..||+.+.. ++ .||.|+..|+...
T Consensus       155 ~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~  216 (346)
T COG4092         155 LDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLY  216 (346)
T ss_pred             hhhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHH
Confidence            1111      11111112 12234455799999999998876653 33 4899999996554

>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B

Probab=98.21  E-value=3e-06  Score=73.33  Aligned_cols=141  Identities=14%  Similarity=0.278  Sum_probs=74.5

Q ss_pred             eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCC-CCCcHHHHHHHH-hcCCCcEE--EEeeeecCCCccCccc--
Q psy3650          36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSH-HPKFIPEMIKLQ-QQENLDVV--TGTRYVGTGGVYGWDF--  109 (435)
Q Consensus        36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~-~~~~l~~~~~~~-~~~~~~~v--~g~~~~~~~~~~~~~~--  109 (435)
                      .|.+.......+.+.+.|+|++.|+++|++|++.|..+ +++|+..+++.+ ++++.+++  .|+......+...+..  
T Consensus        30 ~i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~~~~~  109 (217)
T PF13712_consen   30 LIEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWESPNK  109 (217)
T ss_dssp             EEEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS---EEE
T ss_pred             EEEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCCCCCcccccccc
Confidence            34444444557899999999999999999999999955 689999999999 44555554  3555444332211111  


Q ss_pred             chhh--hhchHH-----HHHHH-H------hCCCccccccceehhhHHHHHHhhcccc-ccCc-hhhHHHHHHHHhhcce
Q psy3650         110 KRKL--VSRGAN-----YLTQL-L------LRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGY-VFQMEMVIRARQYNYT  173 (435)
Q Consensus       110 ~~~~--~~~~~~-----~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~d~~l~~r~~~~g~~  173 (435)
                      ..+.  ..+...     ..... .      ....+.-..+.+.+.+++++   +..+. ..+| .+|.++++++.++|++
T Consensus       110 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~---~fde~~~~gfH~Ydvd~cl~~~~~G~~  186 (217)
T PF13712_consen  110 VGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP---RFDEDLFTGFHFYDVDQCLEARRAGYR  186 (217)
T ss_dssp             EEETTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB--------SS--SSSSHHHHHHHHHHHTT-E
T ss_pred             cccccccccccccccccccccccccccccCCceeEEEecceEEEEEcccC---CCCccccCCcchHHHHHHHHHHHhCCE
Confidence            0000  011000     01011 1      11223333467788899888   22222 3666 6799999999999999


Q ss_pred             eEeeee
Q psy3650         174 IGEVPI  179 (435)
Q Consensus       174 ~~~~~~  179 (435)
                      +...+.
T Consensus       187 v~~~~~  192 (217)
T PF13712_consen  187 VVVPPP  192 (217)
T ss_dssp             EEE---
T ss_pred             EEecCc
Confidence            855443

>KOG2571|consensus

Probab=97.96  E-value=0.00013  Score=73.42  Aligned_cols=138  Identities=18%  Similarity=0.219  Sum_probs=89.9

Q ss_pred             CEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHH---hcCCCccccccce
Q psy3650         287 NFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSF  362 (435)
Q Consensus       287 d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  362 (435)
                      +||+++|+|+.+.|+.+..|++.++ ++.++.++| +.....+.+ .-+.+.+-..+.+.+.+.   .+| -+.-..|+|
T Consensus       442 ~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG-~I~~~~~~w-~v~~Q~FEY~Ish~l~Ka~ESvFG-~VsclPGcf  518 (862)
T KOG2571|consen  442 DYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG-RILNKGGSW-VVAYQNFEYAISHNLQKATESVFG-CVSCLPGCF  518 (862)
T ss_pred             eEEEEecCCCccCcHHHHHHHHHhccCcccceecc-ccccCCCce-EEeHHHHHHHHHHHHHHhhhhhce-eEEecCchh
Confidence            7889999999999999999999997 677888888 555444322 233444444444444332   222 234568889


Q ss_pred             eeecHHHHHHhh-----hcc-------cCcccchhhHHHHHHHHCCCcEEEeeeEEeecccccccCC-HHHHHHHHHH
Q psy3650         363 RLYKKQVLENLV-----SSC-------VSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESKLG-GTEIFQFAKA  427 (435)
Q Consensus       363 ~~~~r~~~~~~~-----~~~-------~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~  427 (435)
                      .+||-+++..=.     +..       .-..+++|-.||.++..+||++.|++-+........+-.. +-+..|+..+
T Consensus       519 s~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~s  596 (862)
T KOG2571|consen  519 SLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLNS  596 (862)
T ss_pred             HHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccccccccCcHhHHHHHHHhhhhccc
Confidence            999996665432     111       1134679999999999999999999987755433332222 2334444444

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=97.96  E-value=0.00015  Score=70.86  Aligned_cols=200  Identities=10%  Similarity=0.038  Sum_probs=127.2

Q ss_pred             CCCcceEEEEeccCC-CCChHHHHHHHHHHhhcCCCCeEEEEEeCCC-Ccc-----hHHHHHHHHHHhCCceEEEecCC-
Q psy3650         197 SVKNKYTVLLPTYNE-KENLPIIVYLITKYMDEGNYPYEIIVIDDGS-PDG-----TLDAAKQLQSIYGSEKIVLKPRK-  268 (435)
Q Consensus       197 ~~~~~isivip~~n~-~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s-~d~-----t~~~~~~~~~~~~~~~i~~~~~~-  268 (435)
                      .....|.||||+.+. ...+.+.++...+...++..+..++||-.+. .|.     ..+.++++..+++..++.++... 
T Consensus       244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~  323 (499)
T PF05679_consen  244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKT  323 (499)
T ss_pred             cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecC
Confidence            445789999999999 8888999998888755556667776666655 221     23577788888888888888877 


Q ss_pred             CCCCHHHHHHHHHhhc-cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECC--CceeccchhHHHHHHHHHH
Q psy3650         269 KKLGLGTAYMHGLKYA-TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGT--GGVYGWDFKRKLVSRGANY  345 (435)
Q Consensus       269 ~n~g~~~a~n~g~~~a-~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~  345 (435)
                      +++..+.|+..|++.. ..+.++++|.|..++++.|.+.-..... + ..|..+.....  ....    +..........
T Consensus       324 ~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~-g-~qvy~PI~Fs~y~p~~~----~~~~~~~~~~~  397 (499)
T PF05679_consen  324 GEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIP-G-KQVYFPIVFSQYNPDIV----YAGKPPEPDQF  397 (499)
T ss_pred             CCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhc-C-cEEEEeeeccccCCccc----ccCCCCccccC
Confidence            7888999999999965 4589999999999999999998876543 2 23444433321  1100    00000000000


Q ss_pred             HHHHhcCCCcc-ccccceeeecHHHHHHh--hhc-ccCcccc-hhhHHHHHHHHCC--CcEEEeee
Q psy3650         346 LTQLLLRPGVS-DLTGSFRLYKKQVLENL--VSS-CVSKGYV-FQMEMVIRARQYN--YTIGEVPI  404 (435)
Q Consensus       346 ~~~~~~~~~~~-~~~~~~~~~~r~~~~~~--~~~-~~~~~~~-~D~el~lr~~~~G--~~i~~~p~  404 (435)
                      .  ..-..++. ..+-|..++=++-+..+  ++. ....+++ ||+||.-+..+.|  +++.-.|.
T Consensus       398 ~--i~~~~G~w~~~gfg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~e  461 (499)
T PF05679_consen  398 D--ISKDTGFWRRFGFGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVE  461 (499)
T ss_pred             c--cCCCCCccccCCCceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccC
Confidence            0  00001111 11223344555555566  332 3345554 8999999999999  78866653

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>KOG2547|consensus

Probab=97.95  E-value=2.7e-05  Score=69.77  Aligned_cols=166  Identities=20%  Similarity=0.251  Sum_probs=103.5

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCH---HHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL---GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~---~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      .++|++.+-+.++|...++++++.+++|++..++.-..+.-|.   -.+.--|.+.|+.|+|++.|+|..+.|+.+-.|+
T Consensus       113 ~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~  192 (431)
T KOG2547|consen  113 HKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMA  192 (431)
T ss_pred             CceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHH
Confidence            3599999999999999999999999999876666544444453   3455578899999999999999999999999999


Q ss_pred             HHHhc-CCCcEEEEeeeecCCCccCcccchhhh--hchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCc-h
Q psy3650          83 KLQQQ-ENLDVVTGTRYVGTGGVYGWDFKRKLV--SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGY-V  158 (435)
Q Consensus        83 ~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  158 (435)
                      ..... +.-..|.+.++....+.....+.+...  +.....+.....+....  .+=..++||++++..|+......+ .
T Consensus       193 t~M~shekmalvtq~py~~dr~Gf~atle~~~fgTsh~r~yl~~n~~~~~c~--tgms~~mrK~~ld~~ggi~~f~~yLa  270 (431)
T KOG2547|consen  193 TTMMSHEKMALVTQTPYCKDRQGFDATLEQVYFGTSHPRIYLSGNVLGFNCS--TGMSSMMRKEALDECGGISAFGGYLA  270 (431)
T ss_pred             HhhhcccceeeecCCceeeccccchhhhhheeeccCCceEEEcccccccccc--ccHHHHHHHHHHHHhccHHHHHHHHH
Confidence            99865 345666666654433222111111110  00000000000111111  111237899999998765544444 3


Q ss_pred             hhHHHHHHHHhhcce
Q psy3650         159 FQMEMVIRARQYNYT  173 (435)
Q Consensus       159 ~d~~l~~r~~~~g~~  173 (435)
                      +|+-+..-....|++
T Consensus       271 edyFaaksllSRG~k  285 (431)
T KOG2547|consen  271 EDYFAAKSLLSRGWK  285 (431)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            344444344557775

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=97.88  E-value=3.9e-05  Score=57.36  Aligned_cols=65  Identities=22%  Similarity=0.210  Sum_probs=43.0

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCC-H-HHHHHHHHhh-ccCCEEEEEcCCCCCCCC
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-L-GTAYMHGLKY-ATGNFIIIMDADLSHHPK   76 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g-~-~~a~n~gl~~-a~gd~i~~lD~D~~~~~~   76 (435)
                      -.++|+||||+|+|.++++++    +.+.+.....+...+ . ...++..++. ..++|++++|+|..+.+.
T Consensus        20 d~i~i~d~~s~D~t~~~l~~~----~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~   87 (97)
T PF13704_consen   20 DHIYIYDDGSTDGTREILRAL----PGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADEFLVPP   87 (97)
T ss_pred             CEEEEEECCCCccHHHHHHhC----CCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecC
Confidence            368999999999999999886    445555543322211 2 2334444444 357999999999955443

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

Probab=97.84  E-value=8.8e-05  Score=67.87  Aligned_cols=86  Identities=22%  Similarity=0.364  Sum_probs=60.8

Q ss_pred             CCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCC----CC----------CCHHH----HHHHHHhhccCCEEEE
Q psy3650           5 NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK----KK----------LGLGT----AYMHGLKYATGNFIII   66 (435)
Q Consensus         5 ~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~----~n----------~g~~~----a~n~gl~~a~gd~i~~   66 (435)
                      ..+++|||.+||+.+++.++++.+..     .+.++.+.    .+          .+.+.    |+|.++..+.++++++
T Consensus        29 ~~~~~liIs~DG~~~~~~~~v~~~~~-----~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vII  103 (334)
T cd02514          29 AEKFPIIVSQDGGYEEVADVAKSFGD-----GVTHIQHPPISIKNVNPPHKFQGYYRIARHYKWALTQTFNLFGYSFVII  103 (334)
T ss_pred             CCCceEEEEeCCCchHHHHHHHhhcc-----ccEEEEcccccccccCcccccchhhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            44699999999999888888887742     23333221    12          12333    8999999888999999


Q ss_pred             EcCCCCCCCCc---HHHHHHHHhcCC-CcEEEE
Q psy3650          67 MDADLSHHPKF---IPEMIKLQQQEN-LDVVTG   95 (435)
Q Consensus        67 lD~D~~~~~~~---l~~~~~~~~~~~-~~~v~g   95 (435)
                      |++|+.+.|++   ++.++..+++++ ..+|.|
T Consensus       104 LEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa  136 (334)
T cd02514         104 LEDDLDIAPDFFSYFQATLPLLEEDPSLWCISA  136 (334)
T ss_pred             ECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEe
Confidence            99999999994   566677665544 333444

Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=97.81  E-value=0.0001  Score=55.09  Aligned_cols=80  Identities=21%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             cCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCC-HHH-HHHHHHhh-cc
Q psy3650         209 YNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-LGT-AYMHGLKY-AT  285 (435)
Q Consensus       209 ~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~~-a~n~g~~~-a~  285 (435)
                      +|++..|++.+..-...     .--+++|+||||+|+|.++++++    +.+.+.....+.... ... .++...+. ..
T Consensus         1 rne~~~L~~wl~~~~~l-----G~d~i~i~d~~s~D~t~~~l~~~----~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (97)
T PF13704_consen    1 RNEADYLPEWLAHHLAL-----GVDHIYIYDDGSTDGTREILRAL----PGVGIIRWVDPYRDERRQRAWRNALIERAFD   71 (97)
T ss_pred             CChHHHHHHHHHHHHHc-----CCCEEEEEECCCCccHHHHHHhC----CCcEEEEeCCCccchHHHHHHHHHHHHhCCC
Confidence            47777777777654321     12279999999999999998876    445555544322211 222 23333333 36


Q ss_pred             CCEEEEEeCCCC
Q psy3650         286 GNFIIIMDADLS  297 (435)
Q Consensus       286 ~d~v~~~d~D~~  297 (435)
                      +++++++|+|-.
T Consensus        72 ~dWvl~~D~DEf   83 (97)
T PF13704_consen   72 ADWVLFLDADEF   83 (97)
T ss_pred             CCEEEEEeeeEE
Confidence            799999999975

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=97.79  E-value=0.0017  Score=61.29  Aligned_cols=204  Identities=12%  Similarity=0.147  Sum_probs=117.1

Q ss_pred             CcceEEEEeccCCCCC-hHHHHHHHHHHhhc--CCCCeEEEEEeCCCCcchHHHHH-----HHHHHh-CCceEEEecCCC
Q psy3650         199 KNKYTVLLPTYNEKEN-LPIIVYLITKYMDE--GNYPYEIIVIDDGSPDGTLDAAK-----QLQSIY-GSEKIVLKPRKK  269 (435)
Q Consensus       199 ~~~isivip~~n~~~~-l~~~l~~l~~~~~~--~~~~~eiivvdd~s~d~t~~~~~-----~~~~~~-~~~~i~~~~~~~  269 (435)
                      .....|++|+|||+.. +-.-|+.....+..  .-.++++.|+.|..+.+. ...+     +++.+- ..-+|.+....+
T Consensus       143 ~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpdi-alAEq~a~~~l~~e~~g~~~ifYRrRr~  221 (736)
T COG2943         143 LHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPDI-ALAEQKAWAELCRELGGEGNIFYRRRRR  221 (736)
T ss_pred             ccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCchh-hhhHHHHHHHHHHHhCCCCceeeehHhh
Confidence            4458999999999752 11112222222222  235688988887655432 1121     223222 223566666666


Q ss_pred             CCC-HHHHHHHHHhhc--cCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceeccchhHHHHHHHHHH
Q psy3650         270 KLG-LGTAYMHGLKYA--TGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY  345 (435)
Q Consensus       270 n~g-~~~a~n~g~~~a--~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (435)
                      |.+ |+.++..-.+.=  ..+|.+++|+|..+..+.+..+++.++ +++++++.......++..- +...+++..+.+..
T Consensus       222 n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL-~AR~qQFatrvYGp  300 (736)
T COG2943         222 NVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTL-YARCQQFATRVYGP  300 (736)
T ss_pred             hhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcchH-HHHHHHHHHHHhch
Confidence            666 566665555543  459999999999999999999999997 4567777766655554311 11233344443333


Q ss_pred             HHHH--hc-CCCccccccceeeecHHHHHHhhhcccC---cccc-----hhhHHHHHHHHCCCcEEEeee
Q psy3650         346 LTQL--LL-RPGVSDLTGSFRLYKKQVLENLVSSCVS---KGYV-----FQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       346 ~~~~--~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~-----~D~el~lr~~~~G~~i~~~p~  404 (435)
                      +...  .+ ..+-+.-.|...++|.+.|.+..+....   ..|+     -|+-=...+++.|.-+-..|.
T Consensus       301 l~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~d  370 (736)
T COG2943         301 LFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYD  370 (736)
T ss_pred             HHhhhhHHHhccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEecc
Confidence            2211  11 1122233566679999999998543221   1111     244444557888888765553

>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=97.75  E-value=0.0002  Score=67.20  Aligned_cols=197  Identities=17%  Similarity=0.174  Sum_probs=97.8

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-----CCc-eEEEecCCCC-
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-----GSE-KIVLKPRKKK-  270 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-----~~~-~i~~~~~~~n-  270 (435)
                      ..+.+-|+|.+||+...+.++|++|.+.. .....+.|+|..||+...+.+.++.+....     +.. .+.+.+...+ 
T Consensus        91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~r-p~~~~fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~  169 (434)
T PF03071_consen   91 KEPVIPVLVFACNRPDYLRRTLDSLLKYR-PSAEKFPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKF  169 (434)
T ss_dssp             ------EEEEESS-TT-HHHHHHHHHHH--S-TTTS-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S-----TT-GGG
T ss_pred             CCCcceEEEEecCCcHHHHHHHHHHHHcC-CCCCCccEEEEecCCcHHHHHHHHHhhhhheeeecCCcCCceeCcccccc
Confidence            35678999999999999999999998753 223457899999999988888888774321     100 1111111101 


Q ss_pred             ---CCHH----HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHH---HhcCCCceEEeeeEECCCceeccchhHHHHH
Q psy3650         271 ---LGLG----TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL---QQQENLDVVTGTRYVGTGGVYGWDFKRKLVS  340 (435)
Q Consensus       271 ---~g~~----~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  340 (435)
                         ++.+    .|++..+..-..+.++++..|..++||+++=+...   +++.+.-.+++. ...++...   ....   
T Consensus       170 ~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSa-wNdnG~~~---~~~~---  242 (434)
T PF03071_consen  170 KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISA-WNDNGKEH---FVDD---  242 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES---TT-BGG---GS-T---
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEc-cccCCccc---cccC---
Confidence               1112    23333333334689999999999999988877654   344333333332 23332100   0000   


Q ss_pred             HHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeecc
Q psy3650         341 RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRV  410 (435)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~  410 (435)
                          .....+....+..  |-..|++|+.++++...+ ...| +|..|=...+.+|-......+++..+.
T Consensus       243 ----~~~~~lyRsdffp--glGWml~r~~w~el~~~W-p~~~-WDdwmR~~~~rkgR~cIrPeisRt~~f  304 (434)
T PF03071_consen  243 ----SRPSLLYRSDFFP--GLGWMLTRELWDELEPKW-PKAF-WDDWMRQPEQRKGRQCIRPEISRTYHF  304 (434)
T ss_dssp             ----T-TT-EEEESS-----SSEEEEHHHHHHHGGG---SS--HHHHHTSHHHHTT-EEEEESSBSEEE-
T ss_pred             ----CCccceEecccCC--chHHHhhHHHHHhhcccC-CCCC-chhhhcCccccCCCceeeccCCCcccc
Confidence                0011222223222  323699999999986543 3344 465555557888777766556665554

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.

>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional

Probab=97.73  E-value=0.0042  Score=55.96  Aligned_cols=173  Identities=16%  Similarity=0.192  Sum_probs=99.5

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEec-------
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKP-------  266 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~-------  266 (435)
                      .+..||||+.||.-.   +++-+   +.--..++-||+|.|++.   |..   .+.++.+...-.. .+.+++       
T Consensus        51 ~~mAIVVP~KdE~l~---lleGV---L~gIPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~r-~~i~vHQkDp~la  123 (393)
T PRK14503         51 GRMAIVVPVKNERLK---LLEGV---LKGIPHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQR-PIIIVHQKDPGLA  123 (393)
T ss_pred             hCcEEEEEcCCCchh---HHhhH---hhcCCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhcC-ceEEEEcCCHHHH
Confidence            468999999998753   33333   334445789999999866   332   3344455432111 222222       


Q ss_pred             ---------------CCCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHh------cCCCceEEeee
Q psy3650         267 ---------------RKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVVTGTR  322 (435)
Q Consensus       267 ---------------~~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~------~~~~~~v~~~~  322 (435)
                                     ..-..||+-++-.|+..|+   .+||.|+|+|+.+|-. +.+-+..+.      +.++.+|--.-
T Consensus       124 ~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGa-V~EYvk~yAAGf~ma~spytMVRi~W  202 (393)
T PRK14503        124 EALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPGA-VNEYVKIYAAGFLMAESPYTMVRIHW  202 (393)
T ss_pred             HHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCch-HHHHHHHHHhhhcccCCCCceEEEEe
Confidence                           1123478888888988875   4999999999988744 444444332      23333332111


Q ss_pred             EEC----CCc--eeccchhHHHHHHHHHHHHHHhcCCCccc---cccceeeecHHHHHHhhhcccCcccc
Q psy3650         323 YVG----TGG--VYGWDFKRKLVSRGANYLTQLLLRPGVSD---LTGSFRLYKKQVLENLVSSCVSKGYV  383 (435)
Q Consensus       323 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~  383 (435)
                      ...    ++.  ...+.....+.+++.+.+.....+.....   ..+|=-++++++++.+   ++..+|.
T Consensus       203 ~~KPKv~~~~lyF~k~GRvSel~nr~LN~l~~~~~gf~t~li~TGNAGEhAmt~~La~~l---~f~tGY~  269 (393)
T PRK14503        203 RYKPKVTEDRLYFRKWGRVSEITNRYLNQLISEYTGFETDIIKTGNAGEHAMTMKLAEIM---PFSTGYS  269 (393)
T ss_pred             cCCCceecCeEEEecCcchhHHHHHHHHHHHhhhccccccceecCCchhhHhhHHHHHhC---CCCCCcc
Confidence            000    111  12234556677777777776665543221   1234468999999888   5566666

>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase

Probab=97.72  E-value=0.0051  Score=55.10  Aligned_cols=174  Identities=18%  Similarity=0.231  Sum_probs=101.2

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEec-------
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKP-------  266 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~-------  266 (435)
                      .+..||||+.||.-.   +++-+   +.--..++-||+|.|++.   |..   .+.++.+...- +-.+..++       
T Consensus        50 ~~maIVVP~KdE~l~---lleGV---L~gIPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t-~r~~i~vHQkDp~la  122 (381)
T TIGR02460        50 GKTAIVVPVKNEKLH---LLEGV---LSGIPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLT-HRKIIIIHQKDPALA  122 (381)
T ss_pred             hCcEEEEEcCCCchh---HHhhH---hhcCCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhh-cCceEEEEcCCHHHH
Confidence            468999999998753   33333   334445789999999876   322   23444554321 11222222       


Q ss_pred             ---------------CCCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHh------cCCCceEEeee
Q psy3650         267 ---------------RKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVVTGTR  322 (435)
Q Consensus       267 ---------------~~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~------~~~~~~v~~~~  322 (435)
                                     ..-..||+-++-.|+..|+   .+||.|+|+|+.+|-. +.+-+..+.      ..++.+|--.-
T Consensus       123 ~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGa-V~EYvk~yAaGf~ma~spy~MVRi~W  201 (381)
T TIGR02460       123 EAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGA-VNEYVKIYAAGFLMATSPYSMVRIHW  201 (381)
T ss_pred             HHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCch-HHHHHHHHHhhhcccCCCCeeEEEEe
Confidence                           1123478888888988875   4999999999988744 444444332      23333332111


Q ss_pred             EEC----CCc--eeccchhHHHHHHHHHHHHHHhcCCCcc---ccccceeeecHHHHHHhhhcccCcccch
Q psy3650         323 YVG----TGG--VYGWDFKRKLVSRGANYLTQLLLRPGVS---DLTGSFRLYKKQVLENLVSSCVSKGYVF  384 (435)
Q Consensus       323 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~  384 (435)
                      ...    +++  ...+.....+.+++.+.+.....+....   ...+|=-++++++++++   ++..+|..
T Consensus       202 ~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~~gfet~ii~TGnAGEhAmt~~La~~l---~f~tGYaV  269 (381)
T TIGR02460       202 RYKPKLTKGTLYFRKWGRVSEITNHYLNLLISEHTGFETDIIKTGNAGEHALTMKLAEIL---PFSSGYSV  269 (381)
T ss_pred             cCCCceecCeEEEcCCCchhHHHHHHHHHHHHhhccccCcceecccchhhhhhHHHHhhC---CCCCCccc
Confidence            000    111  1234556677778777777666554322   12334468999999988   55677763

This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.

>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function

Probab=97.55  E-value=0.0013  Score=57.72  Aligned_cols=123  Identities=18%  Similarity=0.206  Sum_probs=84.3

Q ss_pred             CCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC--cchHHHHHHHHHHhC-------Cc-eEEEe
Q psy3650         196 DSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP--DGTLDAAKQLQSIYG-------SE-KIVLK  265 (435)
Q Consensus       196 ~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~-------~~-~i~~~  265 (435)
                      ....+.|-|+.|..|.+..+....+.|.+ +.++...+.+-++.+.++  |.+.+.+++......       .+ ++.++
T Consensus        21 ~~~~e~VLILtplrna~~~l~~y~~~L~~-L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl   99 (269)
T PF03452_consen   21 ARNKESVLILTPLRNAASFLPDYFDNLLS-LTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITIL   99 (269)
T ss_pred             cccCCeEEEEEecCCchHHHHHHHHHHHh-CCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEE
Confidence            34578999999999999999988887766 354555578866666677  788787775433311       11 34443


Q ss_pred             cCCCCCCH----------------------HHHHHHHHhhcc---CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650         266 PRKKKLGL----------------------GTAYMHGLKYAT---GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       266 ~~~~n~g~----------------------~~a~n~g~~~a~---~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      ..  .+|.                      +.++|..+..+-   .+||+++|+|.. .||+.|+.|+.    ++.|+++
T Consensus       100 ~~--df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~----~~kdIiv  173 (269)
T PF03452_consen  100 RK--DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA----HDKDIIV  173 (269)
T ss_pred             cC--CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh----CCCCEEc
Confidence            32  2221                      256666666653   499999999997 77777777764    5778888


Q ss_pred             eeeEEC
Q psy3650         320 GTRYVG  325 (435)
Q Consensus       320 ~~~~~~  325 (435)
                      +.....
T Consensus       174 Pn~~~~  179 (269)
T PF03452_consen  174 PNCWRR  179 (269)
T ss_pred             cceeec
Confidence            877665

These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].

>KOG3916|consensus

Probab=97.53  E-value=0.00069  Score=60.25  Aligned_cols=153  Identities=16%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      ..++.||||..|+++.|..+|..+...+.+..-+|.|+||.--                         ..+.+..+.-+|
T Consensus       150 r~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL~y~iyVieQ~-------------------------g~~~FNRakL~N  204 (372)
T KOG3916|consen  150 RHKVAIIIPFRNREEHLRYLLHHLHPFLQRQRLDYRIYVIEQA-------------------------GNKPFNRAKLLN  204 (372)
T ss_pred             cceeEEEeecccHHHHHHHHHHHhhHHHHhhhhceeEEEEEec-------------------------CCCcccHHHhhh
Confidence            5689999999999999999999998887766667888887421                         123445677788


Q ss_pred             HHHhhccC----CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650         279 HGLKYATG----NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG  354 (435)
Q Consensus       279 ~g~~~a~~----d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
                      .|+..|..    |-++|=|-|....-|            ..-..++.+            .|.+    ...+.+..+..+
T Consensus       205 VGf~eAlkd~~wdCfIFHDVDllPenD------------rNlY~C~~~------------PRH~----sva~dk~gy~LP  256 (372)
T KOG3916|consen  205 VGFLEALKDYGWDCFIFHDVDLLPEND------------RNLYGCPEQ------------PRHM----SVALDKFGYRLP  256 (372)
T ss_pred             hHHHHHHHhcCCCEEEEecccccccCC------------CCccCCCCC------------Ccch----hhhhhhcccccc
Confidence            88887733    557777777553322            111111111            1111    112223333444


Q ss_pred             ccccccceeeecHHHHHHhhhcc-cCcccc-hhhHHHHHHHHCCCcEEEeee
Q psy3650         355 VSDLTGSFRLYKKQVLENLVSSC-VSKGYV-FQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~-~D~el~lr~~~~G~~i~~~p~  404 (435)
                      +...-||-.+++++-|++|.|++ ...+|+ ||-||..|++.+|++|.-.|.
T Consensus       257 Y~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~  308 (372)
T KOG3916|consen  257 YKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPP  308 (372)
T ss_pred             chhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCC
Confidence            45555777899999999996653 345664 999999999999999988774

>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis

Probab=97.34  E-value=0.013  Score=52.94  Aligned_cols=147  Identities=19%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEecC------
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKPR------  267 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~~------  267 (435)
                      .+.+||||+.||.-   .+++-+   +..-..++-||+|.|++.   |..   .+.++++...-.. .+.+++.      
T Consensus        50 ~~maIVVP~KnE~l---~lleGV---L~gIPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r-~~~~vHQkDp~lA  122 (381)
T PF09488_consen   50 SKMAIVVPCKNEKL---KLLEGV---LSGIPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTRR-QIIIVHQKDPGLA  122 (381)
T ss_dssp             TTEEEEEEESS--H---HHHHHH---HHCS-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT-HHHH
T ss_pred             hCcEEEEECCCCch---hhhhhh---hhcCCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhcC-ceEEEecCCHHHH
Confidence            46899999999874   334333   334456789999999998   544   3555666543211 3333321      


Q ss_pred             ----------------CCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHH------hcCCCceEEeee
Q psy3650         268 ----------------KKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQ------QQENLDVVTGTR  322 (435)
Q Consensus       268 ----------------~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~------~~~~~~~v~~~~  322 (435)
                                      .-..||+-++-.|+..|+   .+||.|+|+|+.+|- .+.+-+..+      .+.++.+|--.-
T Consensus       123 ~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPG-aV~EYvk~yAAGf~ms~spytMVRi~W  201 (381)
T PF09488_consen  123 EAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPG-AVNEYVKDYAAGFAMSESPYTMVRIHW  201 (381)
T ss_dssp             HHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HH-HHHHHHHHHHHHHHC-SSSCEEEEEE-
T ss_pred             HHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcc-hHHHHHHHHHhhhcccCCCceEEEEEe
Confidence                            124588899999998874   499999999988763 344443322      234444443211


Q ss_pred             EEC----CCc--eeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650         323 YVG----TGG--VYGWDFKRKLVSRGANYLTQLLLRPG  354 (435)
Q Consensus       323 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
                      ...    +++  ...|...+...+++.+.+.+...+..
T Consensus       202 ~~KPKv~~~~lyF~kwGRvSeitN~~LN~L~s~~~gfe  239 (381)
T PF09488_consen  202 RSKPKVVKGELYFKKWGRVSEITNRYLNRLISAITGFE  239 (381)
T ss_dssp             -----TT---HHHHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred             cCCCceecCcEEEeecccccHHHHHHHHHHhccccCCC
Confidence            111    111  11234455667778888877766654

Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.

>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]

Probab=97.32  E-value=0.0074  Score=52.64  Aligned_cols=169  Identities=15%  Similarity=0.156  Sum_probs=99.9

Q ss_pred             EEEeccCCCCChHHHHH-HHHHHhhc-CCCCeEEEEEeCCCCcchHHHHHHHHHH---hCCceEEEecCCCCCC------
Q psy3650         204 VLLPTYNEKENLPIIVY-LITKYMDE-GNYPYEIIVIDDGSPDGTLDAAKQLQSI---YGSEKIVLKPRKKKLG------  272 (435)
Q Consensus       204 ivip~~n~~~~l~~~l~-~l~~~~~~-~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~~~~~~~n~g------  272 (435)
                      |..-.||.+..++.... ++.+.... ...++-|-|+++||.|.|.+.|+.+...   .+....++........      
T Consensus         4 IA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~   83 (241)
T PF11735_consen    4 IAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERPP   83 (241)
T ss_pred             EEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccc
Confidence            44456788888876655 55554443 2356888899999999999999988733   2222222221111111      


Q ss_pred             -------HHHHHHHHHhhc---------cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECC----C-----
Q psy3650         273 -------LGTAYMHGLKYA---------TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGT----G-----  327 (435)
Q Consensus       273 -------~~~a~n~g~~~a---------~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~----~-----  327 (435)
                             .+.-+|.+++--         .-+-|+|+| |..+.++.+.+++..-...++++++|--....    +     
T Consensus        84 ~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCamDf~~~~~fYD~wv~R  162 (241)
T PF11735_consen   84 RLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACAMDFINPPKFYDTWVLR  162 (241)
T ss_pred             hhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhhcccccCccccceeEEe
Confidence                   146778887632         127799999 88899998999988765567888887332110    1     


Q ss_pred             ----ceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHHHh
Q psy3650         328 ----GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL  373 (435)
Q Consensus       328 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  373 (435)
                          .....+.+..+...............++..+.+|..+|+.+.|..-
T Consensus       163 D~~G~~~~~~~~p~f~~~~~~~~~~~~~pv~V~SCWnG~va~~a~pf~~~  212 (241)
T PF11735_consen  163 DIEGDSFGSPFWPYFRSASSRDRLRRGDPVPVFSCWNGMVAFDAEPFLPP  212 (241)
T ss_pred             cCCCCccccccCcCcCCHHHHHHHhcCCCeeeecccCCcccccchhhccC
Confidence                0111122222222212222222333456667788889998888764

It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.

>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni []

Probab=97.04  E-value=0.0026  Score=56.29  Aligned_cols=117  Identities=21%  Similarity=0.168  Sum_probs=83.8

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCC---CC-----
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK---KL-----  271 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~---n~-----  271 (435)
                      -.++..|-+.||+..++.+++|+...++      |.|+.=|.|+|+|.+++.++++++|...-+..+.+.   |.     
T Consensus        87 l~~~~~iRvKnE~~tl~~si~S~Lpai~------~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n  160 (347)
T PF06306_consen   87 LNPWAFIRVKNEAMTLAESIESILPAID------EGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEEN  160 (347)
T ss_pred             CCcceEEEEcchhhhHHHHHHHHHHHHh------ccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhh
Confidence            3588999999999999999999988777      899999999999999999999999974322222111   11     


Q ss_pred             CHHHHHHHHHhhc-cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeE
Q psy3650         272 GLGTAYMHGLKYA-TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY  323 (435)
Q Consensus       272 g~~~a~n~g~~~a-~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~  323 (435)
                      ....=.|.++... +.+|++=+|+|.+..++-|-+..-.. ....++|.-+|.
T Consensus       161 ~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~p-k~~~~~v~YsRI  212 (347)
T PF06306_consen  161 SLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIP-KNDYDVVSYSRI  212 (347)
T ss_pred             hhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheee-ccccceEEecce
Confidence            1223345555553 57999999999998877654333222 345667766553

>KOG3588|consensus

Probab=96.93  E-value=0.012  Score=53.02  Aligned_cols=200  Identities=10%  Similarity=0.049  Sum_probs=119.5

Q ss_pred             CCCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC-cch--HHHHHHHHHHhCCceEEEecCCCCC
Q psy3650         195 GDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP-DGT--LDAAKQLQSIYGSEKIVLKPRKKKL  271 (435)
Q Consensus       195 ~~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~-d~t--~~~~~~~~~~~~~~~i~~~~~~~n~  271 (435)
                      .....|.|.+++|...+...+.+...++   ....+.+++++|+-=|++ ++-  .+.+..+...++.+  ..+...+.+
T Consensus       224 ~~i~~pgih~i~pl~gr~~~f~rf~q~~---c~~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~~--q~l~lngeF  298 (494)
T KOG3588|consen  224 TLIEDPGIHMIMPLRGRAAIFARFAQSI---CARGDDRLALSVVYFGYSEDEMAKRETITSLRASFIPV--QFLGLNGEF  298 (494)
T ss_pred             ccccCCCceEEEeccchHHHhhhhhHHH---hccCCCceEEEEEEecCCChHHHhhhHHHHHhhcCCce--EEecccchh
Confidence            3345678999999999998888877744   334456777766665543 332  23444666777654  555555567


Q ss_pred             CHHHHHHHHHhhccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650         272 GLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL  350 (435)
Q Consensus       272 g~~~a~n~g~~~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
                      ..+.|+..|.+.-+. -.+.|+|-|..+..++|...-..- ..+..+-.+....-.+..   -++.  -.+.........
T Consensus       299 SRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt-~~gkqiyfPivFS~ynp~---ivy~--~~~~~p~e~~~~  372 (494)
T KOG3588|consen  299 SRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNT-ILGKQIYFPIVFSQYNPE---IVYE--QDKPLPAEQQLV  372 (494)
T ss_pred             hhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhcc-CCCceEEEEEEEeecCcc---eeec--CCCCCchhHhee
Confidence            788999999998866 456778999888877776654332 123333222221111100   0000  000000000011


Q ss_pred             c--CCC-ccccccceeeecHHHHHHhhhcc-cCcccc-hhhHHHHHHHHCCCcEEEeeeE
Q psy3650         351 L--RPG-VSDLTGSFRLYKKQVLENLVSSC-VSKGYV-FQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       351 ~--~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~-~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      .  ..+ +.+.+-|..+.-|+-|-.+||++ +..+|+ ||++|.-+..+.|.++.-+|..
T Consensus       373 ~~~~tGfwRdfGfGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~p  432 (494)
T KOG3588|consen  373 IKKDTGFWRDFGFGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEP  432 (494)
T ss_pred             eccccccccccCCceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCC
Confidence            0  011 23444445566677777887654 457775 9999999999999999998853

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=96.91  E-value=0.015  Score=50.05  Aligned_cols=164  Identities=9%  Similarity=0.062  Sum_probs=90.4

Q ss_pred             CCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccC--CCC-CCHHHHHHHHHhhcc----CCEEEEEcCCCCCCC
Q psy3650           3 EGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR--KKK-LGLGTAYMHGLKYAT----GNFIIIMDADLSHHP   75 (435)
Q Consensus         3 ~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~--~~n-~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~~   75 (435)
                      ++++.++||+++..+.  -...++++....|  ++.++..  ++. ..-+...|.|...+-    .++|+|+|.|+..+.
T Consensus        34 ts~~~~~vi~~~~~~~--~d~~i~~~i~~~~--~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~  109 (346)
T COG4092          34 TSSDITMVICLRAHEV--MDRLIRSYIDPMP--RVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSS  109 (346)
T ss_pred             cccccEEEEEEecchh--HHHHHHHHhcccc--ceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccH
Confidence            4567799999987663  2366778876544  5555522  222 233667888887775    799999999999998


Q ss_pred             CcHHHHHHHHh----cCC--CcEEEEeeeecCCCcc-Ccccchhhhhc--hHHHHHHHHhCCC-ccccccceehhhHHHH
Q psy3650          76 KFIPEMIKLQQ----QEN--LDVVTGTRYVGTGGVY-GWDFKRKLVSR--GANYLTQLLLRPG-VSDLTGSFRLYKKQVL  145 (435)
Q Consensus        76 ~~l~~~~~~~~----~~~--~~~v~g~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  145 (435)
                      +..++++..++    ..+  +-.|+........... ...+.......  ....+........ .....++..++.+.++
T Consensus       110 dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F  189 (346)
T COG4092         110 DNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMF  189 (346)
T ss_pred             HHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhhhhHhhhhHHHHhCcccccccccccceEEEehhHH
Confidence            88888885442    122  2334433333322110 00000011000  0000111000000 1122355678999999


Q ss_pred             HHhhccc--cccCchhhHHHHHHHHhh
Q psy3650         146 ENLVSSC--VSKGYVFQMEMVIRARQY  170 (435)
Q Consensus       146 ~~~~~~~--~~~~~~~d~~l~~r~~~~  170 (435)
                      ...|+..  +.....+|.|+..|+...
T Consensus       190 ~~tgGydE~F~GhG~EDfe~~~R~~l~  216 (346)
T COG4092         190 SLTGGYDERFRGHGSEDFEFLTRLGLY  216 (346)
T ss_pred             HHhcCCccccccCCchhHHHHHHHHHH
Confidence            8885544  233446789999987553

>PLN02893 Cellulose synthase-like protein

Probab=96.83  E-value=0.011  Score=59.39  Aligned_cols=108  Identities=12%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             eEEEccCCCC-----CCHHHHHHHHHhh----ccCCEEEEEcCCCCC-CCCcHHHHHHHHhcC----CCcEEEEeeeecC
Q psy3650          36 KIVLKPRKKK-----LGLGTAYMHGLKY----ATGNFIIIMDADLSH-HPKFIPEMIKLQQQE----NLDVVTGTRYVGT  101 (435)
Q Consensus        36 ~i~~~~~~~n-----~g~~~a~n~gl~~----a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~~----~~~~v~g~~~~~~  101 (435)
                      .++|+..+.+     .-|+||+|.+++.    +.|++|+.+|+|... +|+.+.+.+-.+.++    +..+|..++....
T Consensus       265 ~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~  344 (734)
T PLN02893        265 NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHG  344 (734)
T ss_pred             ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccC
Confidence            4666655544     4689999999995    679999999999974 688999998888654    4666776665443


Q ss_pred             CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHH
Q psy3650         102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVL  145 (435)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (435)
                      -+... .+.. .....+......+-+.......|+..++||+++
T Consensus       345 i~~~D-~y~~-~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al  386 (734)
T PLN02893        345 INKND-IYAG-ELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVF  386 (734)
T ss_pred             CCcCC-CCcc-hhHHHHHHHhhcccccCCceeeccceEEEHHHh
Confidence            22111 1111 111122222222223333333444567888888

>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases

Probab=96.82  E-value=0.0016  Score=45.94  Aligned_cols=51  Identities=14%  Similarity=0.070  Sum_probs=35.5

Q ss_pred             CccccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEEEeee
Q psy3650         354 GVSDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       354 ~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ......||..+++|+.|.+++++++. .+++ ||.|++.|+..+|+++..+|.
T Consensus        15 ~~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~   67 (78)
T PF02709_consen   15 PYPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPG   67 (78)
T ss_dssp             SSTT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SST
T ss_pred             cCCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCC
Confidence            34456788899999999999887655 5653 999999999999999888664

The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....

>PLN02189 cellulose synthase

Probab=96.76  E-value=0.0041  Score=64.20  Aligned_cols=63  Identities=17%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             eEEEecCCCCCC-----HHHHHHHHHhh----ccCCEEEEEeCCCCC-CCccHHHHHHHHhcC----CCceEEeeeE
Q psy3650         261 KIVLKPRKKKLG-----LGTAYMHGLKY----ATGNFIIIMDADLSH-HPKFIPEMIKLQQQE----NLDVVTGTRY  323 (435)
Q Consensus       261 ~i~~~~~~~n~g-----~~~a~n~g~~~----a~~d~v~~~d~D~~~-~~~~l~~~~~~~~~~----~~~~v~~~~~  323 (435)
                      .++++..+++.|     |+.|+|..++.    ++++||+.+|+|... ++..+.+.+-.+.++    +...|.-+..
T Consensus       499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQr  575 (1040)
T PLN02189        499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQR  575 (1040)
T ss_pred             eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccc
Confidence            477777777777     88999999954    589999999999985 569999999888765    5566665553

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=96.60  E-value=0.16  Score=50.92  Aligned_cols=147  Identities=16%  Similarity=0.138  Sum_probs=84.9

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC---cch---HHHHHHHHHHhCCceEEEec-------
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP---DGT---LDAAKQLQSIYGSEKIVLKP-------  266 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~~~~-------  266 (435)
                      .+..||||+.||.-.   +++-+.   .--..++-||||.|++.   |..   .+.+++++..-.. .+.+++       
T Consensus        55 ~~~aivvp~k~e~~~---~~~gvl---~~ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~-~~~~vhq~dp~~a  127 (694)
T PRK14502         55 KKMAIVLPIKDEDLK---VFEGVL---SGIPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITHR-QAIVVHQKNPELA  127 (694)
T ss_pred             hCcEEEEEcCCCchh---HHhhHh---hcCCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhcC-ceEEEEcCCHHHH
Confidence            468999999998753   333333   34445789999999876   332   3344455432111 222222       


Q ss_pred             ---------------CCCCCCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHh------cCCCceEEeee
Q psy3650         267 ---------------RKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVVTGTR  322 (435)
Q Consensus       267 ---------------~~~n~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~------~~~~~~v~~~~  322 (435)
                                     ..-..||+-++-.|+..|+   .+||.|+|+|+.+|-. +.+-+..+.      +.++.+|--.-
T Consensus       128 ~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~-v~ey~~~yaag~~~~~~~~~mvri~w  206 (694)
T PRK14502        128 NAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA-VWEYAKHFATGFNLAQSPYSMVRILW  206 (694)
T ss_pred             HHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch-HHHHHHHHHhhhcccCCCCeeEEEEe
Confidence                           1123478888999988875   4999999999988744 444443332      23333332110


Q ss_pred             EECC---Cc--eeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650         323 YVGT---GG--VYGWDFKRKLVSRGANYLTQLLLRPG  354 (435)
Q Consensus       323 ~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
                      .+..   ++  ...|...+...+++.+.+.+...+..
T Consensus       207 ~~kpk~~~~~~f~k~gr~s~~~n~~ln~l~s~~~~~e  243 (694)
T PRK14502        207 KYKPKLVGDLYFKRWGRVSEVTNKHLNHLISSKGKFE  243 (694)
T ss_pred             cCCCcccceeEEeeccchhHHHHHHHHHHHHhccccc
Confidence            0000   11  22345566778888888877766653

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=96.54  E-value=0.0097  Score=50.80  Aligned_cols=165  Identities=13%  Similarity=0.078  Sum_probs=94.2

Q ss_pred             CCeEEEEEeCCCC--cc-hHHHHHHHHHHhCCceEEEecCCCCCC-HH----HHHHHHHhhcc-CCEEEEEeCCCCCCCc
Q psy3650         231 YPYEIIVIDDGSP--DG-TLDAAKQLQSIYGSEKIVLKPRKKKLG-LG----TAYMHGLKYAT-GNFIIIMDADLSHHPK  301 (435)
Q Consensus       231 ~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~~~i~~~~~~~n~g-~~----~a~n~g~~~a~-~d~v~~~d~D~~~~~~  301 (435)
                      ..+.++++-..+.  +. ..+.+.+..+++..  ++.....+.+. ..    .+++.+.+.+. .+|++.+|+|..+.++
T Consensus        19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~D--il~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~   96 (195)
T PF01762_consen   19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYGD--ILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD   96 (195)
T ss_pred             CcEEEEEEEecCCCCcHHHHHHhhhhhhhcCc--eEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence            4667777776555  32 33445555555554  33333333322 22    66667777775 7999999999999888


Q ss_pred             cHHHHHHHH-hcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhccc--
Q psy3650         302 FIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV--  378 (435)
Q Consensus       302 ~l~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--  378 (435)
                      .|...+... .......+.|........      .+.-.+++.-.........-...++|++.++++++++.+.....  
T Consensus        97 ~l~~~L~~~~~~~~~~~~~g~~~~~~~~------~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v~~i~~~~~~~  170 (195)
T PF01762_consen   97 RLVSFLKSLKQDPSKNSIYGGCIKNGPP------IRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVVKRIYKASSHT  170 (195)
T ss_pred             HhhhhhhhcccCccccccccccccCCcc------ccccccCceeeeeecccccCCCcCCCCeEEecHHHHHHHHHHhhcC
Confidence            888777765 222333444433322111      11111111000011111223455789999999999999953322  


Q ss_pred             CcccchhhHHHHHHHHCCCcEEEee
Q psy3650         379 SKGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       379 ~~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      ..-..+|.-+.+.+.+.|.+....|
T Consensus       171 ~~~~~eDv~iGi~~~~~~i~~~~~~  195 (195)
T PF01762_consen  171 PFFPLEDVFIGILAEKLGIKPIHDP  195 (195)
T ss_pred             CCCCchHHHHHHHHHHCCCCccCCC
Confidence            2222489999999999998866544

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=96.53  E-value=0.02  Score=49.91  Aligned_cols=174  Identities=10%  Similarity=0.134  Sum_probs=94.6

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-CCceEEEecCCCCCCHHHHHHHHHhhccCCEEE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-GSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII  290 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~  290 (435)
                      ...+...++.+.+.    . .-+|+|+-+...+...+.+.   ... ..+.+.+.......|.+.++..+++....+.++
T Consensus        29 ~pli~~~l~~l~~~----g-~~~v~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~~~~~l  100 (223)
T cd06915          29 RPFLEYLLEYLARQ----G-ISRIVLSVGYLAEQIEEYFG---DGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFL  100 (223)
T ss_pred             cchHHHHHHHHHHC----C-CCEEEEEcccCHHHHHHHHc---CccccCceEEEEECCCCCcchHHHHHHHhhcCCCCEE
Confidence            46677777766542    1 22677665433332222222   111 123444444455678888999999988778899


Q ss_pred             EEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHH---hcCCCccccccceeeecH
Q psy3650         291 IMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL---LLRPGVSDLTGSFRLYKK  367 (435)
Q Consensus       291 ~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~r  367 (435)
                      ++++|..++ ..+..++..+++.+.+++.......+...  +.... ....  +.+...   ..........+|+.+|++
T Consensus       101 v~~~D~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~d~~--~~v~~~~ek~~~~~~~~~~~Giy~~~~  174 (223)
T cd06915         101 VLNGDTYFD-VDLLALLAALRASGADATMALRRVPDASR--YGNVT-VDGD--GRVIAFVEKGPGAAPGLINGGVYLLRK  174 (223)
T ss_pred             EEECCcccC-CCHHHHHHHHHhCCCcEEEEEEECCCCCc--ceeEE-ECCC--CeEEEEEeCCCCCCCCcEEEEEEEECH
Confidence            999999775 45888888776666666554433222110  11100 0000  000000   000112345678899999


Q ss_pred             HHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         368 QVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       368 ~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ++++.+...    .+..-.++.-++...| ++..++.
T Consensus       175 ~~l~~~~~~----~~~~~~~~~~~l~~~~-~v~~~~~  206 (223)
T cd06915         175 EILAEIPAD----AFSLEADVLPALVKRG-RLYGFEV  206 (223)
T ss_pred             HHHhhCCcc----CCChHHHHHHHHHhcC-cEEEEec
Confidence            999887322    1222235666677777 7766554

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=96.30  E-value=0.05  Score=47.21  Aligned_cols=178  Identities=11%  Similarity=0.138  Sum_probs=94.2

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII  291 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~  291 (435)
                      ...+..+++.+...    . .-+|+++-+...+...+.+.+...  ....+..+..+...|.+.++..+++....+.+++
T Consensus        29 ~pli~~~l~~l~~~----g-~~~i~vv~~~~~~~i~~~~~~~~~--~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~lv  101 (217)
T cd04181          29 KPILEYIIERLARA----G-IDEIILVVGYLGEQIEEYFGDGSK--FGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLV  101 (217)
T ss_pred             eeHHHHHHHHHHHC----C-CCEEEEEeccCHHHHHHHHcChhh--cCceEEEEeCCCCCccHHHHHHhhhhcCCCCEEE
Confidence            46677777766542    1 236777665433332222222110  1234555555556788999999999887789999


Q ss_pred             EeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC---ccccccceeeecHH
Q psy3650         292 MDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG---VSDLTGSFRLYKKQ  368 (435)
Q Consensus       292 ~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~  368 (435)
                      +++|.....+ +.+++....+++.+++...........  +.... ....  +.+....-...   -.....|..+|+++
T Consensus       102 ~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~-~d~~--~~v~~~~ek~~~~~~~~~~~Giy~~~~~  175 (217)
T cd04181         102 VNGDVLTDLD-LSELLRFHREKGADATIAVKEVEDPSR--YGVVE-LDDD--GRVTRFVEKPTLPESNLANAGIYIFEPE  175 (217)
T ss_pred             EECCeecCcC-HHHHHHHHHhcCCCEEEEEEEcCCCCc--ceEEE-EcCC--CcEEEEEECCCCCCCCEEEEEEEEECHH
Confidence            9999987665 666777666666666555443321111  11100 0000  00000000111   12346677899999


Q ss_pred             HHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         369 VLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       369 ~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      +++.+..... ....+-.++.-.+.+. .++..+++
T Consensus       176 ~~~~l~~~~~-~~~~~~~~~~~~l~~~-~~v~~~~~  209 (217)
T cd04181         176 ILDYIPEILP-RGEDELTDAIPLLIEE-GKVYGYPV  209 (217)
T ss_pred             HHHhhhhcCC-cccccHHHHHHHHHhc-CCEEEEEc
Confidence            9866632211 2222334566666665 56666554

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=96.13  E-value=0.2  Score=42.93  Aligned_cols=154  Identities=13%  Similarity=0.146  Sum_probs=92.4

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hC----CceEEEec------CCCCCC
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YG----SEKIVLKP------RKKKLG  272 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~----~~~i~~~~------~~~n~g  272 (435)
                      ++|..+....+..+++.+.+.     .--+++||-+...+...+   .+...  ..    ...+.++.      .+...|
T Consensus        23 llpv~g~~pli~~~l~~l~~~-----gi~~iivv~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G   94 (200)
T cd02508          23 AVPFGGRYRLIDFPLSNMVNS-----GIRNVGVLTQYKSRSLND---HLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRG   94 (200)
T ss_pred             eeEECCeeeeHHHHHHHHHHC-----CCCEEEEEeCCChHHHHH---HHhCCCcccCCCCCCCEEEeCcccCCCCCcccC
Confidence            566666535677777776541     123777776654333333   22211  00    00122222      234578


Q ss_pred             HHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHH
Q psy3650         273 LGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL  349 (435)
Q Consensus       273 ~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
                      .+.++..|.....   .+.++++.+|.. ....+.++++..++++.++.....                           
T Consensus        95 ta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~~~t~~~~---------------------------  146 (200)
T cd02508          95 TADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGADITVVYK---------------------------  146 (200)
T ss_pred             cHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCCCEEEEEh---------------------------
Confidence            8999999988763   478899999985 445688999877665655554432                           


Q ss_pred             hcCCCccccccceeeecHHHHHHhhhc-ccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650         350 LLRPGVSDLTGSFRLYKKQVLENLVSS-CVSKGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       350 ~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                              ..+|..+|+++++.++... .......+..|+.-++.+. .++...+
T Consensus       147 --------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~~  192 (200)
T cd02508         147 --------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYAYE  192 (200)
T ss_pred             --------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-CcEEEEE
Confidence                    5677889999998766321 1122233456777777776 4665544

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=96.06  E-value=0.043  Score=49.17  Aligned_cols=110  Identities=14%  Similarity=0.052  Sum_probs=65.9

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA  284 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a  284 (435)
                      .+|+.+. ..+...++.+.+.   . ..-+|+|+-....+...+.+..... ...+.+.+....+..|.+.++..+....
T Consensus        25 llpv~g~-plI~~~l~~l~~~---~-gi~~i~iv~~~~~~~i~~~l~~~~~-~~~~~i~~~~~~~~~Gt~~al~~a~~~l   98 (257)
T cd06428          25 LFPVAGK-PMIHHHIEACAKV---P-DLKEVLLIGFYPESVFSDFISDAQQ-EFNVPIRYLQEYKPLGTAGGLYHFRDQI   98 (257)
T ss_pred             cCeECCe-eHHHHHHHHHHhc---C-CCcEEEEEecCCHHHHHHHHHhccc-ccCceEEEecCCccCCcHHHHHHHHHHh
Confidence            4555554 6777777766541   1 1226777755433333333332211 1233555555555778888887777664


Q ss_pred             c---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEee
Q psy3650         285 T---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT  321 (435)
Q Consensus       285 ~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~  321 (435)
                      .   .+.++++++|..... .+..+++..++.+.++++..
T Consensus        99 ~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~~~~tl~~  137 (257)
T cd06428          99 LAGNPSAFFVLNADVCCDF-PLQELLEFHKKHGASGTILG  137 (257)
T ss_pred             hccCCCCEEEEcCCeecCC-CHHHHHHHHHHcCCCEEEEE
Confidence            2   477889999998665 48899987766666665443

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function

Probab=96.03  E-value=0.027  Score=49.11  Aligned_cols=88  Identities=17%  Similarity=0.275  Sum_probs=63.7

Q ss_pred             HHHHHHHHhhcCCCCeEEEE-EeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCCEEEE--
Q psy3650         218 IVYLITKYMDEGNYPYEIIV-IDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIII--  291 (435)
Q Consensus       218 ~l~~l~~~~~~~~~~~eiiv-vdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d~v~~--  291 (435)
                      ||.|+.   .|+.+++..+| +++.+++.-.+.|.++.+..|+++++..+.   .....++..++..+   .+++++.  
T Consensus        47 ~LpSl~---~QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~R  120 (234)
T PF11316_consen   47 CLPSLR---AQTDQDFTWLVLFDDDLPEPYRERLRDLLADYPQFRIVFRPP---GPHRDAMRRAINAARRDGADPVLQFR  120 (234)
T ss_pred             HhhHHH---hccCCCeEEEEEECCCCCHHHHHHHHHHhccCCCcEEEecCC---chHHHHHHHHHhhhccCCCCEEEEEE
Confidence            345554   47888988766 666777788899999999999777765432   22556677776433   3466555  


Q ss_pred             EeCCCCCCCccHHHHHHHHh
Q psy3650         292 MDADLSHHPKFIPEMIKLQQ  311 (435)
Q Consensus       292 ~d~D~~~~~~~l~~~~~~~~  311 (435)
                      +|+|+.++.++++.+-....
T Consensus       121 LDdDDAl~~dFV~rlr~~a~  140 (234)
T PF11316_consen  121 LDDDDALHRDFVARLRRAAA  140 (234)
T ss_pred             ECCcchhhHHHHHHHHHHHH
Confidence            49999999999999998873

>PLN02917 CMP-KDO synthetase

Probab=96.02  E-value=0.13  Score=46.85  Aligned_cols=139  Identities=13%  Similarity=0.128  Sum_probs=73.5

Q ss_pred             eEEEecCCCCCCHHHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEE--CCCceeccchh
Q psy3650         261 KIVLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYV--GTGGVYGWDFK  335 (435)
Q Consensus       261 ~i~~~~~~~n~g~~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~  335 (435)
                      .++........|.+.+ ..|++...  .|+++++++|.- ++++.|.++++.+.+.. +.+......  ......++...
T Consensus       110 ~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~-~~iv~t~~~~~~~~~~~~ygrv  187 (293)
T PLN02917        110 DVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSLKPEDASDPNRV  187 (293)
T ss_pred             EEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcC-CceEEEEeeecCHHHhcCCCce
Confidence            4443322334465555 46776553  589999999996 99999999999886533 333322211  11111111111


Q ss_pred             HHHHHHHHH--HHHHH-h--------cCCCccccccceeeecHHHHHHhhhcc----cCcccchhhHHHHHHHHCCCcEE
Q psy3650         336 RKLVSRGAN--YLTQL-L--------LRPGVSDLTGSFRLYKKQVLENLVSSC----VSKGYVFQMEMVIRARQYNYTIG  400 (435)
Q Consensus       336 ~~~~~~~~~--~~~~~-~--------~~~~~~~~~~~~~~~~r~~~~~~~~~~----~~~~~~~D~el~lr~~~~G~~i~  400 (435)
                      ....+.-..  ++.+. .        ..........|..+|+++.+..+....    +...|.+|  +  ++.+.|+++.
T Consensus       188 ~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtd--l--~~le~G~~i~  263 (293)
T PLN02917        188 KCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQ--L--KVLENGYKMK  263 (293)
T ss_pred             EEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHH--H--HHHhCCCceE
Confidence            000110000  00000 0        012234567888999999999653211    11222233  2  4789999998


Q ss_pred             EeeeE
Q psy3650         401 EVPIS  405 (435)
Q Consensus       401 ~~p~~  405 (435)
                      .++..
T Consensus       264 ~~~~~  268 (293)
T PLN02917        264 VIKVD  268 (293)
T ss_pred             EEEeC
Confidence            87764

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=95.99  E-value=0.039  Score=47.21  Aligned_cols=117  Identities=9%  Similarity=0.010  Sum_probs=74.0

Q ss_pred             eEEEccCCC--CCCHHHHHHHHHhhcc----CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCccc
Q psy3650          36 KIVLKPRKK--KLGLGTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF  109 (435)
Q Consensus        36 ~i~~~~~~~--n~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~  109 (435)
                      +|.++.+.+  ...+|..+|.|+..|.    .|+++|-|-|..+..+.+.-   ...+.+.-+..+.-            
T Consensus        36 ~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~H~s~~~~------------  100 (219)
T cd00899          36 RIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPRHLSVPLD------------  100 (219)
T ss_pred             EEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEecccccccCccccc---cCCCCCeEEEEeec------------
Confidence            555554333  3568889999998885    37899999998776665331   11111111111110            


Q ss_pred             chhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcc-ccccCch-hhHHHHHHHHhhcceeEeeeeE
Q psy3650         110 KRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS-CVSKGYV-FQMEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~d~~l~~r~~~~g~~~~~~~~~  180 (435)
                                   .+....+.....||..+++++.+.++++. ....+|+ +|.|+..|+...|+++...+..
T Consensus       101 -------------~~~~~lpy~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~  160 (219)
T cd00899         101 -------------KFHYKLPYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGD  160 (219)
T ss_pred             -------------ccccccCcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCc
Confidence                         01112223344577889999999999444 4455775 7999999999999998776643

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=95.98  E-value=0.22  Score=44.18  Aligned_cols=182  Identities=13%  Similarity=0.123  Sum_probs=88.1

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cC
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TG  286 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~  286 (435)
                      +....+..+++.+.+.     ..-+|+|+-+  .+.    +.+..... ++.+.....+...|.+.... ++...   ..
T Consensus        25 ~Gkpll~~~l~~l~~~-----~i~~ivvv~~--~~~----i~~~~~~~-~~~v~~~~~~~~~gt~~~~~-~~~~~~~~~~   91 (245)
T PRK05450         25 GGKPMIVRVYERASKA-----GADRVVVATD--DER----IADAVEAF-GGEVVMTSPDHPSGTDRIAE-AAAKLGLADD   91 (245)
T ss_pred             CCcCHHHHHHHHHHhc-----CCCeEEEECC--cHH----HHHHHHHc-CCEEEECCCcCCCchHHHHH-HHHhcCCCCC
Confidence            3455566666665442     1236666543  122    22222222 33555544444445443333 33322   45


Q ss_pred             CEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECC-CceeccchhHHHHHHHHH--HHHHHhc-C---------
Q psy3650         287 NFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGT-GGVYGWDFKRKLVSRGAN--YLTQLLL-R---------  352 (435)
Q Consensus       287 d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~-~---------  352 (435)
                      +.++++++|. .++++.+.++++.+..++.++++......+ .........+-....-..  .+..... .         
T Consensus        92 ~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~~~~~~~~~  171 (245)
T PRK05450         92 DIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYGRDAFADSA  171 (245)
T ss_pred             CEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCCCCcccccc
Confidence            8899999999 689999999999886655565555332211 000000000000000000  0000000 0         


Q ss_pred             CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         353 PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       353 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ........|..+|+++.++.+...........+....+++...|+++..+..
T Consensus       172 ~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~  223 (245)
T PRK05450        172 PTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVV  223 (245)
T ss_pred             CccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEe
Confidence            0123456678999999999884322111111122222467789999877654

>PLN02458 transferase, transferring glycosyl groups

Probab=95.94  E-value=0.068  Score=47.93  Aligned_cols=104  Identities=10%  Similarity=0.052  Sum_probs=67.1

Q ss_pred             CCcceEEEEeccC-CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCc-chHHHHHHHHHHhCCceEEEecCCCCCC---
Q psy3650         198 VKNKYTVLLPTYN-EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPD-GTLDAAKQLQSIYGSEKIVLKPRKKKLG---  272 (435)
Q Consensus       198 ~~~~isivip~~n-~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d-~t~~~~~~~~~~~~~~~i~~~~~~~n~g---  272 (435)
                      ..+.|-||.|+|. +...... |..+...+..-.+++..|||+|+..- .+.++|++.     ++..+.+..+.|..   
T Consensus       110 ~~rlIivVTPTY~rR~~Q~a~-LTRLahTL~lVp~pL~WIVVEd~~~t~~va~lLrrs-----Gl~y~HL~~k~~~~~~~  183 (346)
T PLN02458        110 PRRLVIIVTPISTKDRYQGVL-LRRLANTLRLVPPPLLWIVVEGQSDSEEVSEMLRKT-----GIMYRHLVFKENFTDPE  183 (346)
T ss_pred             CCceEEEECCCCCCcchhHHH-HHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHc-----CCceEEeccCCCCCCcc
Confidence            4566899999997 3433333 34455555555568899999987632 334444432     33455544444432   


Q ss_pred             --HHHHHHHHHhhcc----CCEEEEEeCCCCCCCccHHHHH
Q psy3650         273 --LGTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMI  307 (435)
Q Consensus       273 --~~~a~n~g~~~a~----~d~v~~~d~D~~~~~~~l~~~~  307 (435)
                        ...-+|.|+...+    .-+|.|.|+|+.++-+.+++|-
T Consensus       184 ~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR  224 (346)
T PLN02458        184 AELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR  224 (346)
T ss_pred             chhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence              2355899998874    3788999999999988888864

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=95.82  E-value=0.014  Score=60.55  Aligned_cols=63  Identities=21%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             eEEEecCCCCCC-----HHHHHHHHHhh----ccCCEEEEEeCCCC-CCCccHHHHHHHHhcCC----CceEEeeeE
Q psy3650         261 KIVLKPRKKKLG-----LGTAYMHGLKY----ATGNFIIIMDADLS-HHPKFIPEMIKLQQQEN----LDVVTGTRY  323 (435)
Q Consensus       261 ~i~~~~~~~n~g-----~~~a~n~g~~~----a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~----~~~v~~~~~  323 (435)
                      .++++.++++.|     |+.|+|..++.    ++++||+.+|+|.. -+|..+.+.+-.+.+++    ...|.-+..
T Consensus       517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQr  593 (1079)
T PLN02638        517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQR  593 (1079)
T ss_pred             ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcc
Confidence            346666666666     88999999964    48999999999997 45999999999887654    446665543

>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

Probab=95.73  E-value=0.11  Score=44.36  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=66.1

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC--cchHHHHHHHHHHhCCceEEEecCCCC-------
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP--DGTLDAAKQLQSIYGSEKIVLKPRKKK-------  270 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~i~~~~~~~n-------  270 (435)
                      |.|-+|.|+|........+. .+...+..-. ++.-|||+|+..  +.+.++|++.     ++..+.+..+.+       
T Consensus         1 p~i~vVTPTy~R~~Q~~~Lt-RLa~TL~lVp-~l~WIVVEd~~~~t~~va~lL~~s-----gl~y~HL~~~~~~~~~~~~   73 (223)
T cd00218           1 PTIYVVTPTYARPVQKAELT-RLAHTLRLVP-PLHWIVVEDSEEKTPLVAELLRRS-----GLMYTHLNAKTPSDPTWLK   73 (223)
T ss_pred             CeEEEECCCCccchhhHHHH-HHHHHHhcCC-ceEEEEEeCCCCCCHHHHHHHHHc-----CCceEEeccCCCCCcccCC
Confidence            45789999998877665543 4444455444 899999999872  3455555543     334444433322       


Q ss_pred             CCHHHHHHHHHhhcc-------CCEEEEEeCCCCCCCccHHHHH
Q psy3650         271 LGLGTAYMHGLKYAT-------GNFIIIMDADLSHHPKFIPEMI  307 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~-------~d~v~~~d~D~~~~~~~l~~~~  307 (435)
                      .-....+|.|++..+       .-+|.|.|+|+.++-+.+++|-
T Consensus        74 ~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR  117 (223)
T cd00218          74 PRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR  117 (223)
T ss_pred             cccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence            112367888888763       2578999999999988888854

Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=95.69  E-value=0.079  Score=43.47  Aligned_cols=100  Identities=13%  Similarity=0.211  Sum_probs=69.6

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-cCCE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-TGNF  288 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a-~~d~  288 (435)
                      +....++.+++.+.+.-     .-+|+|+-..  +.   ....+ .. .++.++.-+ ....|...++..|+... ..+.
T Consensus        22 ~g~~li~~~l~~l~~~~-----~~~Ivvv~~~--~~---~~~~~-~~-~~~~~v~~~-~~~~G~~~sl~~a~~~~~~~~~   88 (160)
T PF12804_consen   22 GGKPLIERVLEALREAG-----VDDIVVVTGE--EE---IYEYL-ER-YGIKVVVDP-EPGQGPLASLLAALSQLPSSEP   88 (160)
T ss_dssp             TTEEHHHHHHHHHHHHT-----ESEEEEEEST--HH---HHHHH-TT-TTSEEEE-S-TSSCSHHHHHHHHHHTSTTSSE
T ss_pred             CCccHHHHHHHHhhccC-----CceEEEecCh--HH---HHHHH-hc-cCceEEEec-cccCChHHHHHHHHHhcccCCC
Confidence            66677888888876641     1278777655  22   22222 22 233444432 23589999999999998 8899


Q ss_pred             EEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeee
Q psy3650         289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTR  322 (435)
Q Consensus       289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~  322 (435)
                      ++++.+|.. ++++.+..++..+.+.+.++++...
T Consensus        89 vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~  123 (160)
T PF12804_consen   89 VLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF  123 (160)
T ss_dssp             EEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             cEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence            999999995 7999999999999877777776543

...

>KOG1413|consensus

Probab=95.64  E-value=0.15  Score=46.03  Aligned_cols=188  Identities=17%  Similarity=0.135  Sum_probs=110.9

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCC--------ceEEEecCC
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS--------EKIVLKPRK  268 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--------~~i~~~~~~  268 (435)
                      ...|.+.|++-+.|..+.++++++.+..+- .....+.|||.-||...++.+.++.+......        ..+.+.+..
T Consensus        64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~  142 (411)
T KOG1413|consen   64 NWPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRH  142 (411)
T ss_pred             CCCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcc
Confidence            346778899999999899999998887653 23345788999999998988888877544321        123333322


Q ss_pred             CCCC--------HHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHH--hcCCCceEEeeeEECCCceeccchhHHH
Q psy3650         269 KKLG--------LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ--QQENLDVVTGTRYVGTGGVYGWDFKRKL  338 (435)
Q Consensus       269 ~n~g--------~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~  338 (435)
                      +...        +..|+|+.+...+.+.+++..+|.-+.|+++.-+....  .+..--+-+-+....|+.....      
T Consensus       143 ~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaWNDNGk~~~I------  216 (411)
T KOG1413|consen  143 KKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAWNDNGKKQTI------  216 (411)
T ss_pred             cccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeeeccCCCcccc------
Confidence            2222        12455555555567999999999999999888877643  2333333333333444331100      


Q ss_pred             HHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcE
Q psy3650         339 VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTI  399 (435)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i  399 (435)
                      -..-    ...++..++..  |-..|+.++.++++-. .+..+|. |-+|-....++|-.-
T Consensus       217 d~~~----~~~lYRtDFFp--GLGWml~~~~W~ELsp-~wP~~fW-DDWmr~pe~rK~R~c  269 (411)
T KOG1413|consen  217 DSTR----PSLLYRTDFFP--GLGWMLTKKLWEELSP-KWPVAFW-DDWMRIPENRKGRQC  269 (411)
T ss_pred             cccc----cchhhhccccc--cchHHHHHHHHHhhCC-CCcccch-hhhhhchhhhccccc
Confidence            0000    01122222222  2236899999999843 2344554 656665566655443

>PLN02195 cellulose synthase A

Probab=95.58  E-value=0.02  Score=58.93  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=45.7

Q ss_pred             EEEecCCCCCC-----HHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhcC----CCceEEeeeEE
Q psy3650         262 IVLKPRKKKLG-----LGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQE----NLDVVTGTRYV  324 (435)
Q Consensus       262 i~~~~~~~n~g-----~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~----~~~~v~~~~~~  324 (435)
                      ++++.++++.|     |+.|+|.+++.+    +++||+.+|+|.. .+++.+.+.+-.+.++    +...|.-+...
T Consensus       421 LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F  497 (977)
T PLN02195        421 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRF  497 (977)
T ss_pred             eEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCccc
Confidence            44455554444     779999999854    6899999999987 4457999988888765    34566665543

>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ]

Probab=95.49  E-value=0.36  Score=44.85  Aligned_cols=209  Identities=9%  Similarity=-0.008  Sum_probs=119.1

Q ss_pred             eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchH--H----------------HHHHHHH--------
Q psy3650         202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTL--D----------------AAKQLQS--------  255 (435)
Q Consensus       202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~--~----------------~~~~~~~--------  255 (435)
                      |=|.|.+|...+ +..+|..+.+....+ ..+-|-|++-...++..  .                ....+..        
T Consensus         2 IFvsiasyRD~~-c~~Tl~~~~~~A~~P-~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   79 (343)
T PF11397_consen    2 IFVSIASYRDPE-CAPTLKDLFARATNP-ERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWP   79 (343)
T ss_pred             EEEEEeeecCch-HHHHHHHHHHhcCCC-ceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhcccccccc
Confidence            557899998754 666676665543322 34666666533222111  0                0111111        


Q ss_pred             ------HhCCceEEEecCCCCCCHHHHHHHHHhhccC-CEEEEEeCCCCCCCccHHHHHHHHhc--CCCceEEeeeEECC
Q psy3650         256 ------IYGSEKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQ--ENLDVVTGTRYVGT  326 (435)
Q Consensus       256 ------~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~--~~~~~v~~~~~~~~  326 (435)
                            ...+++++.++..+-.|...|+..+...=++ +|++.+|+...+.++|=+.|++.++.  ++..+.+......+
T Consensus        80 ~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~  159 (343)
T PF11397_consen   80 DGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYE  159 (343)
T ss_pred             cccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcc
Confidence                  1235677777788888999999999998765 99999999999999999988887753  22333332221111


Q ss_pred             C----ceeccch-----hHHHHHHHHHHH-HHH-----h--cCCCccccccceeeecHHHHHHhhhcccC--cccchhhH
Q psy3650         327 G----GVYGWDF-----KRKLVSRGANYL-TQL-----L--LRPGVSDLTGSFRLYKKQVLENLVSSCVS--KGYVFQME  387 (435)
Q Consensus       327 ~----~~~~~~~-----~~~~~~~~~~~~-~~~-----~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~D~e  387 (435)
                      .    .......     ...+...+.-.+ ...     .  .........+||..-+-++++++-..+..  .-.+|++-
T Consensus       160 ~~~~~~~~~~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eVP~DP~lp~lF~GEE~~  239 (343)
T PF11397_consen  160 PDGGQPEPEKTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREVPYDPHLPFLFDGEEIS  239 (343)
T ss_pred             cccCCccccCCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecCCCCCCcccccccHHHH
Confidence            1    0000000     000000000000 000     0  11123345777766677777777433333  33458899


Q ss_pred             HHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         388 MVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       388 l~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                      +..|+--+||.+...+.....|...
T Consensus       240 ~aaRlwT~GYD~Y~P~~~v~~H~Y~  264 (343)
T PF11397_consen  240 MAARLWTHGYDFYSPTRNVLFHLYS  264 (343)
T ss_pred             HHHHHHHcCCccccCCCceeEEEcc
Confidence            9999999999998888766655444

>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function

Probab=95.47  E-value=0.12  Score=45.66  Aligned_cols=95  Identities=19%  Similarity=0.265  Sum_probs=59.5

Q ss_pred             CCCCCC---eEEEEEeCCCC--cChHHHHHHHHHHh--------CCceEEEccCCCC----------C----------CH
Q psy3650           2 DEGNYP---YEIIVIDDGSP--DGTLDAAKQLQSIY--------GSEKIVLKPRKKK----------L----------GL   48 (435)
Q Consensus         2 ~~~~~~---~EiivvDd~S~--d~t~~i~~~~~~~~--------~~~~i~~~~~~~n----------~----------g~   48 (435)
                      ..++||   +++=.+-+.|+  |.|.+.+++..++.        +..+|.+++..-.          .          -.
T Consensus        48 ~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~m  127 (269)
T PF03452_consen   48 LSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAM  127 (269)
T ss_pred             HhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHH
Confidence            345676   66644445566  77877777554332        1234555533211          0          14


Q ss_pred             HHHHHHHHhhccC---CEEEEEcCCCC-CCCCcHHHHHHHHhcCCCcEEEEeeeec
Q psy3650          49 GTAYMHGLKYATG---NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVG  100 (435)
Q Consensus        49 ~~a~n~gl~~a~g---d~i~~lD~D~~-~~~~~l~~~~~~~~~~~~~~v~g~~~~~  100 (435)
                      +.+||..+..|-+   +||+++|+|.. .+|..|+.|++    ++.|+|+...+..
T Consensus       128 AraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~----~~kdIivPn~~~~  179 (269)
T PF03452_consen  128 ARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA----HDKDIIVPNCWRR  179 (269)
T ss_pred             HHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh----CCCCEEccceeec
Confidence            5677777777754   89999999995 45555566655    8889998876655

These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].

>PLN02248 cellulose synthase-like protein

Probab=95.34  E-value=0.019  Score=59.72  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=46.8

Q ss_pred             eEEEecCCCCCC-----HHHHHHHHHh----hccCCEEEEEeCCCC-CCCccHHHHHHHHhc---CCCceEEeeeE
Q psy3650         261 KIVLKPRKKKLG-----LGTAYMHGLK----YATGNFIIIMDADLS-HHPKFIPEMIKLQQQ---ENLDVVTGTRY  323 (435)
Q Consensus       261 ~i~~~~~~~n~g-----~~~a~n~g~~----~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~---~~~~~v~~~~~  323 (435)
                      .++++..+++.|     |+.|+|..++    .++++||+.+|+|.. .++..+.+.+-.+.+   ++...|.-+..
T Consensus       586 ~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQr  661 (1135)
T PLN02248        586 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQR  661 (1135)
T ss_pred             eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcc
Confidence            455555555555     7899998887    458999999999997 666699998888866   45566665553

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=95.34  E-value=0.5  Score=41.70  Aligned_cols=180  Identities=13%  Similarity=0.111  Sum_probs=88.8

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccC--C
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG--N  287 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~--d  287 (435)
                      +....++..++.+.+.    ..--+|+|+-+.  +    .+.++...+ ++.+.+.......|.+. ...+++....  |
T Consensus        24 ~gkpll~~~l~~l~~~----~~i~~ivvv~~~--~----~i~~~~~~~-~~~~~~~~~~~~~gt~~-~~~~~~~~~~~~d   91 (239)
T cd02517          24 AGKPMIQHVYERAKKA----KGLDEVVVATDD--E----RIADAVESF-GGKVVMTSPDHPSGTDR-IAEVAEKLDADDD   91 (239)
T ss_pred             CCcCHHHHHHHHHHhC----CCCCEEEEECCc--H----HHHHHHHHc-CCEEEEcCcccCchhHH-HHHHHHhcCCCCC
Confidence            4456677777766542    112266666431  2    233333322 34554433333345553 4445555544  8


Q ss_pred             EEEEEeCCC-CCCCccHHHHHHHHhcC-CCceEEeeeEECCCc---eec-cchhHHHHHHHHHHHHHH-hc------CCC
Q psy3650         288 FIIIMDADL-SHHPKFIPEMIKLQQQE-NLDVVTGTRYVGTGG---VYG-WDFKRKLVSRGANYLTQL-LL------RPG  354 (435)
Q Consensus       288 ~v~~~d~D~-~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~-~~------~~~  354 (435)
                      .++++++|. .++++.+..+++.+... +.++++......+..   ..+ +.....-..... .+... ..      ...
T Consensus        92 ~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~-~~~~~~~~~~~~~~~~~  170 (239)
T cd02517          92 IVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYAL-YFSRSPIPYPRDSSEDF  170 (239)
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEE-EecCCCCCCCCCCCCCC
Confidence            999999999 68899999999887654 565544332221100   000 000000000000 00000 00      001


Q ss_pred             ccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEee
Q psy3650         355 VSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      .....+|+.+|+++.++.+...... .......++ +++.+.|+++..+.
T Consensus       171 ~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~v~~~~  219 (239)
T cd02517         171 PYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQ-LRALENGYKIKVVE  219 (239)
T ss_pred             ceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHH-HHHHHCCCceEEEE
Confidence            2346778899999999988432111 111112233 36778898876664

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>KOG2571|consensus

Probab=95.28  E-value=0.064  Score=54.80  Aligned_cols=134  Identities=18%  Similarity=0.223  Sum_probs=86.2

Q ss_pred             CCCHHHHHHHHHhhccC--CEEEEEcCCCCCCCCcHHHHHHHHhc-CCCcEEEEeeeecCCCcc--CcccchhhhhchHH
Q psy3650          45 KLGLGTAYMHGLKYATG--NFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVY--GWDFKRKLVSRGAN  119 (435)
Q Consensus        45 n~g~~~a~n~gl~~a~g--d~i~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~~  119 (435)
                      ..++--.++......+.  +||.++|+|+.+.|+.+..|++.+.. +....++| +.....+.+  ...-.++.++....
T Consensus       423 w~~~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG-~I~~~~~~w~v~~Q~FEY~Ish~l~  501 (862)
T KOG2571|consen  423 WNQHRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG-RILNKGGSWVVAYQNFEYAISHNLQ  501 (862)
T ss_pred             HHHHHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc-ccccCCCceEEeHHHHHHHHHHHHH
Confidence            33556667777777765  78899999999999999999999975 44555666 433332211  11112333444444


Q ss_pred             HHHHHHhCCCccccccceehhhHHHHHHhh------------ccccccCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650         120 YLTQLLLRPGVSDLTGSFRLYKKQVLENLV------------SSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~  180 (435)
                      .....-++. +....|.|.+||-+++..-.            .+.....+++|..|+.+...+|+++.+++..
T Consensus       502 Ka~ESvFG~-VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s  573 (862)
T KOG2571|consen  502 KATESVFGC-VSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAAS  573 (862)
T ss_pred             Hhhhhhcee-EEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccc
Confidence            444444443 45556778899986663211            1124455788999999999999998776543

>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []

Probab=95.27  E-value=0.027  Score=50.46  Aligned_cols=110  Identities=15%  Similarity=0.270  Sum_probs=67.1

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH-hCCceE-EEecC--CCCCCH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI-YGSEKI-VLKPR--KKKLGL  273 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i-~~~~~--~~n~g~  273 (435)
                      ....+.||||+-+.  .|...++.-+..++    .+++|||-|+-.....++.+.+.-. +..-.+ .++..  --.+.-
T Consensus         6 ~~~~~divi~~~~~--~l~~~~~~wr~~~~----~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~   79 (348)
T PF03214_consen    6 LDDEVDIVIPALRP--NLTDFLEEWRPFFS----PYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKG   79 (348)
T ss_pred             ccCcccEEeecccc--cHHHHHHHHHHhhc----ceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccccc
Confidence            34579999999863  34444554444333    7899999998765544444333100 000000 01111  112224


Q ss_pred             HHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcC
Q psy3650         274 GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE  313 (435)
Q Consensus       274 ~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~  313 (435)
                      .+.++.|+-.++-+|++++|+|+....+..-..++.+.++
T Consensus        80 ~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh  119 (348)
T PF03214_consen   80 DACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQH  119 (348)
T ss_pred             cchhhhHhhhcccceEEEEccccccccCCccceehhhhcc
Confidence            5788999999999999999999997777776666666543

It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=95.22  E-value=0.73  Score=39.92  Aligned_cols=171  Identities=14%  Similarity=0.051  Sum_probs=89.8

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cC
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TG  286 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~  286 (435)
                      +....+..+++.+...    ...-+|+||-+....   +....+........+.++..  ..|...++..|++..   ..
T Consensus        26 ~Gkpll~~~i~~l~~~----~~~~~ivVv~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~al~~~~~~~~   96 (218)
T cd02516          26 GGKPVLEHTLEAFLAH----PAIDEIVVVVPPDDI---DLAKELAKYGLSKVVKIVEG--GATRQDSVLNGLKALPDADP   96 (218)
T ss_pred             CCeEHHHHHHHHHhcC----CCCCEEEEEeChhHH---HHHHHHHhcccCCCeEEECC--chHHHHHHHHHHHhcccCCC
Confidence            3455666767666431    112266666543222   22222211111113334333  235678899999886   46


Q ss_pred             CEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCce-eccchhHHHHHHHHHHHHHHhcCCCccccccceee
Q psy3650         287 NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGV-YGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL  364 (435)
Q Consensus       287 d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
                      ++++++++|.- ++++.+.++++.+.+.+..+...+ ....-.. ...........           ...+..++.. .+
T Consensus        97 ~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-----------r~~~~~~~~P-~~  163 (218)
T cd02516          97 DIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVP-VTDTIKRVDDDGVVVETLD-----------REKLWAAQTP-QA  163 (218)
T ss_pred             CEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEe-ccccEEEecCCCceeecCC-----------hHHhhhhcCC-Cc
Confidence            89999999985 999999999998865433222221 1110000 00000111111           1222233333 58


Q ss_pred             ecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650         365 YKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       365 ~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      |+++.+.++.......++ +-+|..--+.+.|.++..++
T Consensus       164 f~~~~~~~~~~~~~~~~~-~~td~~~~~~~~~~~v~~v~  201 (218)
T cd02516         164 FRLDLLLKAHRQASEEGE-EFTDDASLVEAAGGKVALVE  201 (218)
T ss_pred             ccHHHHHHHHHHHHhcCC-CcCcHHHHHHHcCCCeEEEe
Confidence            999999998543222233 23455556788888887766

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=94.83  E-value=0.16  Score=42.68  Aligned_cols=100  Identities=13%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc--CC
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GN  287 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~--~d  287 (435)
                      +....++.+++.+.+.     ..-+|+||-+....   . ..+..... .+.+ +.......|...++..|++.+.  .|
T Consensus        24 ~g~~li~~~i~~l~~~-----~~~~i~vv~~~~~~---~-~~~~~~~~-~~~~-~~~~~~~~G~~~~i~~al~~~~~~~~   92 (186)
T cd04182          24 DGKPLLRHALDAALAA-----GLSRVIVVLGAEAD---A-VRAALAGL-PVVV-VINPDWEEGMSSSLAAGLEALPADAD   92 (186)
T ss_pred             CCeeHHHHHHHHHHhC-----CCCcEEEECCCcHH---H-HHHHhcCC-CeEE-EeCCChhhCHHHHHHHHHHhccccCC
Confidence            4556667777766542     12267666443221   1 11221111 2222 2222234578899999999886  79


Q ss_pred             EEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEe
Q psy3650         288 FIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       288 ~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      +++++.+|. .++++.+..+++.+.+++.++++.
T Consensus        93 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~  126 (186)
T cd04182          93 AVLILLADQPLVTAETLRALIDAFREDGAGIVAP  126 (186)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence            999999999 488999999999886555555554

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]

Probab=94.80  E-value=0.17  Score=44.26  Aligned_cols=90  Identities=18%  Similarity=0.229  Sum_probs=60.1

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHh---CCceEEEccCCCCC-------------CHHHHHHHHHhhcc---------CC
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIY---GSEKIVLKPRKKKL-------------GLGTAYMHGLKYAT---------GN   62 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~---~~~~i~~~~~~~n~-------------g~~~a~n~gl~~a~---------gd   62 (435)
                      .=|-|+++||+|+|.+.++.+....   +-.+.+........             -.+..||++++--.         -+
T Consensus        35 v~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd  114 (241)
T PF11735_consen   35 VFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFD  114 (241)
T ss_pred             EEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcC
Confidence            5677999999999999999998443   22122222110000             13678999985432         27


Q ss_pred             EEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeee
Q psy3650          63 FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRY   98 (435)
Q Consensus        63 ~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~   98 (435)
                      -|+|++ |..+.+..+-+++..-...+++++++.-+
T Consensus       115 ~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCamDf  149 (241)
T PF11735_consen  115 KVLFLN-DVFFCPEDILELLFTRNRGNYDMACAMDF  149 (241)
T ss_pred             EEEEec-CcccCHHHHHHHHhhcCcccccchhhccc
Confidence            799999 77888888877777664467888877543

It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=94.74  E-value=0.27  Score=48.47  Aligned_cols=170  Identities=11%  Similarity=-0.021  Sum_probs=95.9

Q ss_pred             CCCCeEEEEEeCCC-CcC-----hHHHHHHHHHHhCCceEEEccCC-CCCCHHHHHHHHHhhcc-CCEEEEEcCCCCCCC
Q psy3650           4 GNYPYEIIVIDDGS-PDG-----TLDAAKQLQSIYGSEKIVLKPRK-KKLGLGTAYMHGLKYAT-GNFIIIMDADLSHHP   75 (435)
Q Consensus         4 ~~~~~EiivvDd~S-~d~-----t~~i~~~~~~~~~~~~i~~~~~~-~n~g~~~a~n~gl~~a~-gd~i~~lD~D~~~~~   75 (435)
                      ++.+.-++||..++ .|.     ..+.++++..++|..++.++.-. ++...+.++..|+.... .+.++|.|-|..+++
T Consensus       277 ~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~  356 (499)
T PF05679_consen  277 TDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTS  356 (499)
T ss_pred             cCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCH
Confidence            35555566666554 332     23577888888888888888776 78889999999998655 589999999999999


Q ss_pred             CcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHH-HHHHHhCCCccccccceehhhHHHHHH--hhccc
Q psy3650          76 KFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY-LTQLLLRPGVSDLTGSFRLYKKQVLEN--LVSSC  152 (435)
Q Consensus        76 ~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  152 (435)
                      ++|.++-....+ + --|+.+.....-++   .+...-....... ......+..-....|-..+|+.+....  -+...
T Consensus       357 ~fL~rcR~nti~-g-~qvy~PI~Fs~y~p---~~~~~~~~~~~~~~~i~~~~G~w~~~gfg~~~~YksDy~~~~~~~~~~  431 (499)
T PF05679_consen  357 DFLNRCRMNTIP-G-KQVYFPIVFSQYNP---DIVYAGKPPEPDQFDISKDTGFWRRFGFGMVCFYKSDYMRIRGGGFDL  431 (499)
T ss_pred             HHHHHHHHhhhc-C-cEEEEeeeccccCC---cccccCCCCccccCccCCCCCccccCCCceEEEEhhhhhhhccccccc
Confidence            999998765532 2 22333322110000   0000000000000 000000111111112233566666655  34444


Q ss_pred             cccCc-hhhHHHHHHHHhhc--ceeEeee
Q psy3650         153 VSKGY-VFQMEMVIRARQYN--YTIGEVP  178 (435)
Q Consensus       153 ~~~~~-~~d~~l~~r~~~~g--~~~~~~~  178 (435)
                      ...+| .+|.+++-+..+.|  +.+...+
T Consensus       432 ~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~  460 (499)
T PF05679_consen  432 SIRGWGGEDVDLYDKFLKSGHKLHVFRAV  460 (499)
T ss_pred             ccccccccHHHHHHHHHhCCCceEEEEcc
Confidence            55666 45789999999998  6665543

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A

Probab=94.73  E-value=0.18  Score=39.25  Aligned_cols=75  Identities=21%  Similarity=0.356  Sum_probs=52.8

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      ..+++||||.+|+++.|..+|..+...+......+.|+||.-.                         ....+.+|.-+|
T Consensus        46 ~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~y~I~vieQ~-------------------------~~~~FNRg~L~N  100 (136)
T PF13733_consen   46 RHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLDYRIFVIEQV-------------------------DNGPFNRGKLMN  100 (136)
T ss_dssp             S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEE--------------------------SSS---HHHHHH
T ss_pred             ccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcceEEEEEEeec-------------------------cCCCCchhhhhh
Confidence            5589999999999999999999998887766678888888522                         122345677888


Q ss_pred             HHHhhcc----CCEEEEEeCCCCC
Q psy3650         279 HGLKYAT----GNFIIIMDADLSH  298 (435)
Q Consensus       279 ~g~~~a~----~d~v~~~d~D~~~  298 (435)
                      .|+..|.    -|.++|=|-|...
T Consensus       101 vGf~eA~~~~~~dc~ifHDVDllP  124 (136)
T PF13733_consen  101 VGFLEALKDDDFDCFIFHDVDLLP  124 (136)
T ss_dssp             HHHHHHHHHS--SEEEEE-TTEEE
T ss_pred             HHHHHHhhccCCCEEEEecccccc
Confidence            8888773    4889999988763

...

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=94.39  E-value=0.81  Score=38.83  Aligned_cols=50  Identities=18%  Similarity=0.315  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHhhccCCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEE
Q psy3650         270 KLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       270 n~g~~~a~n~g~~~a~~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      ..|...++..|++....++++++++|. .++++.+..+++.+.+++..++.
T Consensus        73 ~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  123 (193)
T PRK00317         73 FPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW  123 (193)
T ss_pred             CCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence            357778899999988889999999999 48999999999987654544443

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=94.28  E-value=0.34  Score=42.06  Aligned_cols=134  Identities=11%  Similarity=0.129  Sum_probs=72.5

Q ss_pred             eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhh-
Q psy3650          36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV-  114 (435)
Q Consensus        36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~-  114 (435)
                      .+.+.......|.+.++..|++....+.++++++|..++ ..+..+++...+.++++++.........  .+...+.-- 
T Consensus        71 ~~~~~~~~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~v~~d~~  147 (223)
T cd06915          71 RIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDTYFD-VDLLALLAALRASGADATMALRRVPDAS--RYGNVTVDGD  147 (223)
T ss_pred             eEEEEECCCCCcchHHHHHHHhhcCCCCEEEEECCcccC-CCHHHHHHHHHhCCCcEEEEEEECCCCC--cceeEEECCC
Confidence            444444456678888999999888778899999999775 4577888877666666655443221111  111100000 


Q ss_pred             hchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeee
Q psy3650         115 SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVP  178 (435)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~  178 (435)
                      .+.. .+.............+|..+++++++..+...    .+....++..++...| ++..++
T Consensus       148 ~~v~-~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~-~v~~~~  205 (223)
T cd06915         148 GRVI-AFVEKGPGAAPGLINGGVYLLRKEILAEIPAD----AFSLEADVLPALVKRG-RLYGFE  205 (223)
T ss_pred             CeEE-EEEeCCCCCCCCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHHHhcC-cEEEEe
Confidence            0000 00000000012233467889999999876321    2222345555666556 654444

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase

Probab=94.13  E-value=2  Score=39.14  Aligned_cols=162  Identities=16%  Similarity=0.193  Sum_probs=82.8

Q ss_pred             eEEEEEeCCCC---cC---hHHHHHHHHHHhCCceEEEccCCC---------------------CCCHHHHHHHHHhhcc
Q psy3650           8 YEIIVIDDGSP---DG---TLDAAKQLQSIYGSEKIVLKPRKK---------------------KLGLGTAYMHGLKYAT   60 (435)
Q Consensus         8 ~EiivvDd~S~---d~---t~~i~~~~~~~~~~~~i~~~~~~~---------------------n~g~~~a~n~gl~~a~   60 (435)
                      --||||.|.+.   |.   -.+.++.|+.-..+.-+.++++.+                     +-|||.++-.|+-.|+
T Consensus        77 c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~r~~i~vHQkDp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk  156 (381)
T TIGR02460        77 CPIIIVSNSKREPPDRFKMEVDLIRHFSNLTHRKIIIIHQKDPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAK  156 (381)
T ss_pred             CeEEEEeCCCCCChhHHHHHHHHHHHHHHhhcCceEEEEcCCHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHH
Confidence            45788877655   32   235566666533232333332211                     1388999998988876


Q ss_pred             ---CCEEEEEcCCCCCCCCcHHHHHHHH------hcCCCcEEEEeeeecCCCccCcccc------hhhhhchHHHHHHHH
Q psy3650          61 ---GNFIIIMDADLSHHPKFIPEMIKLQ------QQENLDVVTGTRYVGTGGVYGWDFK------RKLVSRGANYLTQLL  125 (435)
Q Consensus        61 ---gd~i~~lD~D~~~~~~~l~~~~~~~------~~~~~~~v~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  125 (435)
                         .+||-|+|+|..++ +...+.+...      .+.++.+|=-.+...+.-..+.-+.      ..+.++..+.+....
T Consensus       157 ~~g~~YVGFiDaDNyiP-GaV~EYvk~yAaGf~ma~spy~MVRi~W~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~  235 (381)
T TIGR02460       157 AIGAEYVGFVDADNYFP-GAVNEYVKIYAAGFLMATSPYSMVRIHWRYKPKLTKGTLYFRKWGRVSEITNHYLNLLISEH  235 (381)
T ss_pred             HhCCceEeEeecccCCC-chHHHHHHHHHhhhcccCCCCeeEEEEecCCCceecCeEEEcCCCchhHHHHHHHHHHHHhh
Confidence               39999999999654 4444444333      1234444432221111111111111      122223222222222


Q ss_pred             hCCC---ccccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhcce
Q psy3650         126 LRPG---VSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYNYT  173 (435)
Q Consensus       126 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g~~  173 (435)
                      .+..   +....+|=.++++++++.+   ++..+|..+ .++...+-+.|..
T Consensus       236 ~gfet~ii~TGnAGEhAmt~~La~~l---~f~tGYaVEp~~lvdlle~~G~~  284 (381)
T TIGR02460       236 TGFETDIIKTGNAGEHALTMKLAEIL---PFSSGYSVEPYELVYILERFGGW  284 (381)
T ss_pred             ccccCcceecccchhhhhhHHHHhhC---CCCCCccccHHHHHHHHHHhcCc
Confidence            2221   1122455668999999998   556777766 4444444555543

This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.

>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans

Probab=94.10  E-value=0.13  Score=45.43  Aligned_cols=167  Identities=11%  Similarity=0.031  Sum_probs=87.7

Q ss_pred             eEEEEec-cCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHH
Q psy3650         202 YTVLLPT-YNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHG  280 (435)
Q Consensus       202 isivip~-~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g  280 (435)
                      ++++|.+ |++...|.++++.+.    ....--+|+||=++.......  ......  .+.+.++..+.|  .-.++-.-
T Consensus         1 fTvvi~t~~~R~~~L~~~l~~l~----~~~~l~~IvVvWn~~~~~P~~--~~~~~~--~vpV~~~~~~~n--sLnnRF~p   70 (247)
T PF09258_consen    1 FTVVINTSYKRSDLLKRLLRHLA----SSPSLRKIVVVWNNPNPPPPS--SKWPST--GVPVRVVRSSRN--SLNNRFLP   70 (247)
T ss_dssp             EEEEEEE-SS-HHHHHHHHHHHT----TSTTEEEEEEEEE-TS--THH--HHHT-----S-EEEEEESSH--HGGGGGS-
T ss_pred             CEEEEEecccchHHHHHHHHHHH----cCCCCCeEEEEeCCCCCCCcc--cccCCC--CceEEEEecCCc--cHHhcCcC
Confidence            4788999 877776766666552    222334777776653222111  222222  245666554332  22444445


Q ss_pred             HhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEee-eEE-C--CCceeccchhHHHHHHHHHHHHHHhcCCCcc
Q psy3650         281 LKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT-RYV-G--TGGVYGWDFKRKLVSRGANYLTQLLLRPGVS  356 (435)
Q Consensus       281 ~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (435)
                      ....+++.|+.+|+|..++.+.|+-..+.+++.+.-+|+.. |.. .  .++.+.+..               .....+.
T Consensus        71 ~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~---------------~~~~~yS  135 (247)
T PF09258_consen   71 DPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTS---------------EWSNEYS  135 (247)
T ss_dssp             -TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE----------------SSS--BS
T ss_pred             ccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCcccccccc---------------CCCCcch
Confidence            55678999999999999999999999999987776666532 222 1  122221111               2233455


Q ss_pred             ccccceeeecHHHHHHhhhc-c-------cCcccchhhHHHHHHH
Q psy3650         357 DLTGSFRLYKKQVLENLVSS-C-------VSKGYVFQMEMVIRAR  393 (435)
Q Consensus       357 ~~~~~~~~~~r~~~~~~~~~-~-------~~~~~~~D~el~lr~~  393 (435)
                      .+..++..++|..++..-.. .       ....-+||.-|-....
T Consensus       136 mvLt~aaf~h~~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs  180 (247)
T PF09258_consen  136 MVLTGAAFYHRYYLELYTHWLPASIREYVDEHFNCEDIAMNFLVS  180 (247)
T ss_dssp             EE-TTEEEEETHHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred             hhhhhhHhhcchHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence            56667788999888776321 0       1123347777766643

They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=94.01  E-value=0.62  Score=40.94  Aligned_cols=182  Identities=10%  Similarity=0.111  Sum_probs=93.9

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT  285 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~  285 (435)
                      +|+.+. ..+..+++.+.+.    . --+|+|+-....+...+.+.++.. ...+.+.........|.+.++..+.....
T Consensus        26 lpv~g~-pli~~~l~~l~~~----g-~~~v~iv~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~G~~~al~~a~~~~~   98 (233)
T cd06425          26 VEFCNK-PMIEHQIEALAKA----G-VKEIILAVNYRPEDMVPFLKEYEK-KLGIKITFSIETEPLGTAGPLALARDLLG   98 (233)
T ss_pred             CeECCc-chHHHHHHHHHHC----C-CcEEEEEeeeCHHHHHHHHhcccc-cCCeEEEeccCCCCCccHHHHHHHHHHhc
Confidence            344443 6677777776542    1 226666654433333444433211 12345555444556788899999888765


Q ss_pred             C--CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCC--C-cccccc
Q psy3650         286 G--NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP--G-VSDLTG  360 (435)
Q Consensus       286 ~--d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~  360 (435)
                      .  +-++++++|.....+ +..+++..++.+.++++..........  +.+...-...  ..+....-..  . -....+
T Consensus        99 ~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~v~~d~~~--~~v~~~~ekp~~~~~~~~~~  173 (233)
T cd06425          99 DDDEPFFVLNSDVICDFP-LAELLDFHKKHGAEGTILVTKVEDPSK--YGVVVHDENT--GRIERFVEKPKVFVGNKINA  173 (233)
T ss_pred             cCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCCCEEEEEEEcCCccc--cCeEEEcCCC--CEEEEEEECCCCCCCCEEEE
Confidence            3  446777999877655 688888777666665554432222111  1111000000  0000000010  1 122456


Q ss_pred             ceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         361 SFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       361 ~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      |..+|++++++.+...    ......|+.-.+.+.| ++...+.
T Consensus       174 Giyi~~~~~l~~l~~~----~~~~~~~~~~~l~~~~-~v~~~~~  212 (233)
T cd06425         174 GIYILNPSVLDRIPLR----PTSIEKEIFPKMASEG-QLYAYEL  212 (233)
T ss_pred             EEEEECHHHHHhcccC----cccchhhhHHHHHhcC-CEEEEee
Confidence            7889999999887321    1112345555566554 6665554

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=93.95  E-value=1.3  Score=39.00  Aligned_cols=183  Identities=10%  Similarity=0.057  Sum_probs=94.1

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT  285 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~  285 (435)
                      +|..+ ...+..+++.+.+.    . --+|+++-....+...+.+++.. . -+..+.++......|.+.++..|.....
T Consensus        26 ~~i~g-~~li~~~l~~l~~~----~-~~~i~vv~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~g~~~sl~~a~~~i~   97 (236)
T cd04189          26 IPVAG-KPIIQYAIEDLREA----G-IEDIGIVVGPTGEEIKEALGDGS-R-FGVRITYILQEEPLGLAHAVLAARDFLG   97 (236)
T ss_pred             eEECC-cchHHHHHHHHHHC----C-CCEEEEEcCCCHHHHHHHhcchh-h-cCCeEEEEECCCCCChHHHHHHHHHhcC
Confidence            44444 36777777776542    1 22676665543333333332211 1 1234555555556788899999988875


Q ss_pred             CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCccccccce
Q psy3650         286 GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDLTGSF  362 (435)
Q Consensus       286 ~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  362 (435)
                      .+-++++.+|..+..+ +.+++..+...+.+++.+.....+...  +.... . ..  ..+....-   ...-.....|+
T Consensus        98 ~~~~li~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~-~-d~--~~v~~~~ek~~~~~~~~~~~Gi  170 (236)
T cd04189          98 DEPFVVYLGDNLIQEG-ISPLVRDFLEEDADASILLAEVEDPRR--FGVAV-V-DD--GRIVRLVEKPKEPPSNLALVGV  170 (236)
T ss_pred             CCCEEEEECCeecCcC-HHHHHHHHHhcCCceEEEEEECCCccc--ceEEE-E-cC--CeEEEEEECCCCCCCCEEEEEE
Confidence            4345558899888665 666777665556665444322221110  00000 0 00  00000000   00112345667


Q ss_pred             eeecHHHHHHhhhcccC--cccchhhHHHHHHHHCCCcEEEeee
Q psy3650         363 RLYKKQVLENLVSSCVS--KGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       363 ~~~~r~~~~~~~~~~~~--~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      .+|+.++++.+-.....  ..+. -.++.-++.+.|.++..++.
T Consensus       171 y~~~~~~~~~l~~~~~~~~~~~~-~~d~~~~~i~~g~~v~~~~~  213 (236)
T cd04189         171 YAFTPAIFDAISRLKPSWRGELE-ITDAIQWLIDRGRRVGYSIV  213 (236)
T ss_pred             EEeCHHHHHHHHhcCCCCCCeEE-HHHHHHHHHHcCCcEEEEEc
Confidence            89999998876211111  1122 24677778888888776665

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=93.91  E-value=0.94  Score=39.36  Aligned_cols=97  Identities=16%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHhhcc-----CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHH----
Q psy3650         272 GLGTAYMHGLKYAT-----GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSR----  341 (435)
Q Consensus       272 g~~~a~n~g~~~a~-----~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~----  341 (435)
                      |...++..|++...     .++++++++|.- ++++.+.++++.+...+.+.+++.......     ++.......    
T Consensus        79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  153 (223)
T cd02513          79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRF-----PWRALGLDDNGLE  153 (223)
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcC-----cHHheeeccCCce
Confidence            56677888887653     389999999995 899999999998876666776665433321     111111000    


Q ss_pred             HHHH----HHHHhcCCCccccccceeeecHHHHHHh
Q psy3650         342 GANY----LTQLLLRPGVSDLTGSFRLYKKQVLENL  373 (435)
Q Consensus       342 ~~~~----~~~~~~~~~~~~~~~~~~~~~r~~~~~~  373 (435)
                      ....    ..+..-........|++.+++++.+.+.
T Consensus       154 ~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~  189 (223)
T cd02513         154 PVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLES  189 (223)
T ss_pred             eccCcccccCCcCCChhHeeECCEEEEEEHHHHHhc
Confidence            0000    0000111234456788899999988775

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional

Probab=93.88  E-value=2.3  Score=38.97  Aligned_cols=122  Identities=19%  Similarity=0.169  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHHH------hcCCCcEEEEeeeecCCCccCcccchh-----
Q psy3650          47 GLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQ------QQENLDVVTGTRYVGTGGVYGWDFKRK-----  112 (435)
Q Consensus        47 g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~------~~~~~~~v~g~~~~~~~~~~~~~~~~~-----  112 (435)
                      |||.++-.|+-.|+   .+||-|+|+|..++ +...+.+...      .+.++.+|=-.+...+.-..+.-+.++     
T Consensus       144 GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yAAGf~ma~spytMVRi~W~~KPKv~~~~lyF~k~GRvS  222 (393)
T PRK14503        144 GKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYAAGFLMAESPYTMVRIHWRYKPKVTEDRLYFRKWGRVS  222 (393)
T ss_pred             CcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHHhhhcccCCCCceEEEEecCCCceecCeEEEecCcchh
Confidence            88999998888876   39999999999654 4444444333      134444443222111111111112222     


Q ss_pred             -hhhchHHHHHHHHhCCC--c-cccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhcc
Q psy3650         113 -LVSRGANYLTQLLLRPG--V-SDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYNY  172 (435)
Q Consensus       113 -~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g~  172 (435)
                       +.++..+.+.....+..  + ....+|=.++++++++.+   ++..+|..+ .++...+-+.|.
T Consensus       223 el~nr~LN~l~~~~~gf~t~li~TGNAGEhAmt~~La~~l---~f~tGY~VEp~~lvdlle~~Gg  284 (393)
T PRK14503        223 EITNRYLNQLISEYTGFETDIIKTGNAGEHAMTMKLAEIM---PFSTGYSIEPYEIVYLLEEYGG  284 (393)
T ss_pred             HHHHHHHHHHHhhhccccccceecCCchhhHhhHHHHHhC---CCCCCccccHHHHHHHHHHhCC
Confidence             22222222222222221  1 222355568999999998   556777666 344434444444

>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function

Probab=93.86  E-value=0.23  Score=43.44  Aligned_cols=82  Identities=18%  Similarity=0.305  Sum_probs=58.4

Q ss_pred             CCCCCCeEEEE-EeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc---CCEEE--EEcCCCCCCC
Q psy3650           2 DEGNYPYEIIV-IDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---GNFII--IMDADLSHHP   75 (435)
Q Consensus         2 ~~~~~~~Eiiv-vDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~---gd~i~--~lD~D~~~~~   75 (435)
                      .|++.+|.++| +|+.+.+.-.+.++++.+..|..+++..+   ......++..++..+.   +++++  -||+||-+..
T Consensus        53 ~QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~  129 (234)
T PF11316_consen   53 AQTDQDFTWLVLFDDDLPEPYRERLRDLLADYPQFRIVFRP---PGPHRDAMRRAINAARRDGADPVLQFRLDDDDALHR  129 (234)
T ss_pred             hccCCCeEEEEEECCCCCHHHHHHHHHHhccCCCcEEEecC---CchHHHHHHHHHhhhccCCCCEEEEEEECCcchhhH
Confidence            57888899888 55555555667888888878866666532   2235667777764443   45554  4599999999


Q ss_pred             CcHHHHHHHHh
Q psy3650          76 KFIPEMIKLQQ   86 (435)
Q Consensus        76 ~~l~~~~~~~~   86 (435)
                      ++++++-+...
T Consensus       130 dFV~rlr~~a~  140 (234)
T PF11316_consen  130 DFVARLRRAAA  140 (234)
T ss_pred             HHHHHHHHHHH
Confidence            99999999873

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=93.83  E-value=1.2  Score=39.35  Aligned_cols=185  Identities=15%  Similarity=0.116  Sum_probs=107.1

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      ++|+|+. +-+.-.+..+...     .--+|+||..-.+   ....+++....  -.+.+.+...++..|.+.|.-.|-+
T Consensus        25 LlpV~~K-Pmi~y~l~~L~~a-----GI~dI~II~~~~~---~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~   95 (286)
T COG1209          25 LLPVYDK-PMIYYPLETLMLA-----GIRDILIVVGPED---KPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAED   95 (286)
T ss_pred             cceecCc-chhHhHHHHHHHc-----CCceEEEEecCCc---hhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHh
Confidence            4778864 3455556655431     1237777643322   22233333221  1457788888889999999999999


Q ss_pred             hccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh---cCCCcccc
Q psy3650         283 YATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL---LRPGVSDL  358 (435)
Q Consensus       283 ~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  358 (435)
                      .... ++++++ +|+++.. .+.+++..+.+.+.+..+-.....+...++.   ..+....  ...++.   ...+-...
T Consensus        96 fv~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV---~e~d~~~--~v~~l~EKP~~P~SNlA  168 (286)
T COG1209          96 FVGDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGV---VEFDEDG--KVIGLEEKPKEPKSNLA  168 (286)
T ss_pred             hcCCCceEEEe-cCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccceE---EEEcCCC--cEEEeEECCCCCCCcee
Confidence            9985 555555 5666555 7999998887655555554444444332111   0000000  111111   11111123


Q ss_pred             ccceeeecHHHHHHhhhcccCccc-chhhHHHHHHHHCCCcEEEeeeE
Q psy3650         359 TGSFRLYKKQVLENLVSSCVSKGY-VFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~~~~~~~~~-~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      ..|+.+|+.++|+.+.....+.+- .|=+|..-.+.+.|+++......
T Consensus       169 vtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~  216 (286)
T COG1209         169 VTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIR  216 (286)
T ss_pred             EEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEcc
Confidence            445689999999998544333333 36778888899999999998875

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=93.82  E-value=0.41  Score=41.39  Aligned_cols=61  Identities=11%  Similarity=0.298  Sum_probs=44.4

Q ss_pred             eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650          36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR   97 (435)
Q Consensus        36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~   97 (435)
                      .+.++......|.+.++..++.....+.++++++|.....+ +..+++...+.++++++...
T Consensus        71 ~i~~~~~~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~  131 (217)
T cd04181          71 NIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLD-LSELLRFHREKGADATIAVK  131 (217)
T ss_pred             eEEEEeCCCCCccHHHHHHhhhhcCCCCEEEEECCeecCcC-HHHHHHHHHhcCCCEEEEEE
Confidence            45555445557889999999988877899999999987665 55666666566766665543

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=93.81  E-value=0.77  Score=39.89  Aligned_cols=171  Identities=9%  Similarity=0.012  Sum_probs=87.2

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC-CCCCHHHHHHHHHhhc
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK-KKLGLGTAYMHGLKYA  284 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~-~n~g~~~a~n~g~~~a  284 (435)
                      +|..+. ..+...++.+.+.    . --+|+++-....+...+.+.   ....++.+...... +..|.+.++..++...
T Consensus        25 lpi~g~-~li~~~l~~l~~~----g-i~~i~iv~~~~~~~i~~~~~---~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~   95 (221)
T cd06422          25 VPVAGK-PLIDHALDRLAAA----G-IRRIVVNTHHLADQIEAHLG---DSRFGLRITISDEPDELLETGGGIKKALPLL   95 (221)
T ss_pred             eeECCE-EHHHHHHHHHHHC----C-CCEEEEEccCCHHHHHHHHh---cccCCceEEEecCCCcccccHHHHHHHHHhc
Confidence            444444 6677777766542    1 22666665433233222222   21234456555554 4568889999999987


Q ss_pred             cCCEEEEEeCCCCCCCccHHHHHHHHh--cCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccce
Q psy3650         285 TGNFIIIMDADLSHHPKFIPEMIKLQQ--QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSF  362 (435)
Q Consensus       285 ~~d~v~~~d~D~~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (435)
                      ..+.++++++|.....+ +..++....  ..+..+.+...........+  ... ....  +.+....-.........|+
T Consensus        96 ~~~~~lv~~~D~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~v~-~d~~--~~v~~~~~~~~~~~~~~Gi  169 (221)
T cd06422          96 GDEPFLVVNGDILWDGD-LAPLLLLHAWRMDALLLLLPLVRNPGHNGVG--DFS-LDAD--GRLRRGGGGAVAPFTFTGI  169 (221)
T ss_pred             CCCCEEEEeCCeeeCCC-HHHHHHHHHhccCCCceEEEEEEcCCCCCcc--eEE-ECCC--CcEeecccCCCCceEEEEE
Confidence            66889999999988766 555666553  33444444322222111100  000 0000  0000000011113356678


Q ss_pred             eeecHHHHHHhhhcccCcccchhhHHHHHHHHCC
Q psy3650         363 RLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYN  396 (435)
Q Consensus       363 ~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G  396 (435)
                      .+|+++++..+...    .+. -.++.-.+.+.|
T Consensus       170 yi~~~~~l~~l~~~----~~~-~~d~~~~l~~~~  198 (221)
T cd06422         170 QILSPELFAGIPPG----KFS-LNPLWDRAIAAG  198 (221)
T ss_pred             EEEcHHHHhhCCcC----ccc-HHHHHHHHHHcC
Confidence            89999999987321    111 124555566666

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=93.80  E-value=1.9  Score=38.08  Aligned_cols=119  Identities=12%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECC-Ccee---ccchhHHH------HHHH-H----HHHHH
Q psy3650         285 TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGT-GGVY---GWDFKRKL------VSRG-A----NYLTQ  348 (435)
Q Consensus       285 ~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~-~~~~---~~~~~~~~------~~~~-~----~~~~~  348 (435)
                      ..|+++++++|.- ++++.|.++++.+.+.+.++++......+ ....   ........      +++. .    .....
T Consensus        87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~  166 (238)
T TIGR00466        87 DDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAK  166 (238)
T ss_pred             CCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccc
Confidence            4689999999996 99999999999986555666665433222 0000   00000000      0000 0    00000


Q ss_pred             HhcCCC-ccccccceeeecHHHHHHhhhcccCccc--chhhHHHHHHHHCCCcEEEeeeE
Q psy3650         349 LLLRPG-VSDLTGSFRLYKKQVLENLVSSCVSKGY--VFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       349 ~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      ....+. ....+-|..+|+++++++..... ...+  .|..|. +|+.++|++|..+...
T Consensus       167 ~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~-~~~le~~e~leq-lr~le~g~~i~~~~~~  224 (238)
T TIGR00466       167 RQTPVGDNLLRHIGIYGYRAGFIEEYVAWK-PCVLEEIEKLEQ-LRVLYYGEKIHVKIAQ  224 (238)
T ss_pred             cccccccceeEEEEEEeCCHHHHHHHHhCC-CCcccccchhHH-HhhhhcCCceEEEEeC
Confidence            001111 12335567899999999985432 2222  244444 6899999999887753

>PLN02190 cellulose synthase-like protein

Probab=93.76  E-value=0.092  Score=52.90  Aligned_cols=52  Identities=13%  Similarity=0.252  Sum_probs=42.0

Q ss_pred             eEEEecCCCCCC-----HHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhc
Q psy3650         261 KIVLKPRKKKLG-----LGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQ  312 (435)
Q Consensus       261 ~i~~~~~~~n~g-----~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~  312 (435)
                      .++++.++++.|     |+.|+|.-++-+    ++.+|+-+|+|.. -+++.+.+.+-.+.+
T Consensus       253 ~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld  314 (756)
T PLN02190        253 HLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQ  314 (756)
T ss_pred             eEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcC
Confidence            577777776666     779999998754    7899999999996 688888888877653

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=93.70  E-value=0.63  Score=40.37  Aligned_cols=178  Identities=11%  Similarity=0.104  Sum_probs=91.1

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|..+. ..+..+++.+...    ... +|+|+-+...    +.++++....  ....+.++..+...|.+.++..+.. 
T Consensus        24 l~~~g~-pli~~~l~~l~~~----~~~-~iivv~~~~~----~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~-   92 (220)
T cd06426          24 LKVGGK-PILETIIDRFIAQ----GFR-NFYISVNYLA----EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPE-   92 (220)
T ss_pred             CeECCc-chHHHHHHHHHHC----CCc-EEEEECccCH----HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHh-
Confidence            444443 5677777776542    112 6666654322    2223332211  1234555444445676777654443 


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCC-Cccccccce
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP-GVSDLTGSF  362 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  362 (435)
                      ...+.++++.+|... ...+..+++.++..+.+++...........  +..... ..   ..+....-.. .-....+|.
T Consensus        93 ~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~-d~---~~v~~~~ek~~~~~~~~~Gi  165 (220)
T cd06426          93 KPTDPFLVMNGDILT-NLNYEHLLDFHKENNADATVCVREYEVQVP--YGVVET-EG---GRITSIEEKPTHSFLVNAGI  165 (220)
T ss_pred             hCCCCEEEEcCCEee-ccCHHHHHHHHHhcCCCEEEEEEEcCCCCc--ceEEEE-CC---CEEEEEEECCCCCCeEEEEE
Confidence            336778889999755 456888998877666665554433221111  111100 00   0000000011 112345677


Q ss_pred             eeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         363 RLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       363 ~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      .+|++++++.+..    ..+.+-.++.-.+.+.|.++...++.
T Consensus       166 y~~~~~~~~~i~~----~~~~~l~~~~~~~i~~~~~i~~~~~~  204 (220)
T cd06426         166 YVLEPEVLDLIPK----NEFFDMPDLIEKLIKEGKKVGVFPIH  204 (220)
T ss_pred             EEEcHHHHhhcCC----CCCcCHHHHHHHHHHCCCcEEEEEeC
Confidence            8999999987721    11122246677788888877766653

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=93.62  E-value=0.44  Score=39.92  Aligned_cols=94  Identities=12%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....++.+++.+....      -+|+|+-+...+.    ..    . .++.++. ......|...++..|++....+++
T Consensus        24 ~g~~ll~~~i~~l~~~~------~~iivv~~~~~~~----~~----~-~~~~~v~-~~~~~~G~~~si~~~l~~~~~~~v   87 (181)
T cd02503          24 GGKPLLEHVLERLKPLV------DEVVISANRDQER----YA----L-LGVPVIP-DEPPGKGPLAGILAALRAAPADWV   87 (181)
T ss_pred             CCEEHHHHHHHHHHhhc------CEEEEECCCChHH----Hh----h-cCCcEee-CCCCCCCCHHHHHHHHHhcCCCeE
Confidence            45566777777765431      2677775433222    11    1 1233322 222456888999999999888999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhcCCCceEEe
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      +++.+|.- ++++.+..+++.+ .++.++++.
T Consensus        88 lv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~  118 (181)
T cd02503          88 LVLACDMPFLPPELLERLLAAA-EEGADAVVP  118 (181)
T ss_pred             EEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence            99999995 8999999999887 445555554

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>KOG1476|consensus

Probab=93.52  E-value=0.59  Score=41.80  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=68.8

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC--cchHHHHHHHHHHhCCceEEEecCCCCCCH---
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP--DGTLDAAKQLQSIYGSEKIVLKPRKKKLGL---  273 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~---  273 (435)
                      .|.|-||.|+|+....... |..+...+.+-. ++..|||.||+.  ..+..++++-     +...+.+..+.+.++   
T Consensus        86 ~~~iivVTPTY~R~~q~~~-LtRlanTL~~V~-nLhWIVVEd~~~~~p~v~~~L~rt-----gl~ythl~~~t~~~~~~~  158 (330)
T KOG1476|consen   86 LPTIIVVTPTYVRPVQAAE-LTRLANTLRLVP-NLHWIVVEDGEGTTPEVSGILRRT-----GLPYTHLVHKTPMGYKAR  158 (330)
T ss_pred             CccEEEEcccccchhHHHH-HHHHHHHHhhcC-CeeEEEEecCCCCCHHHHHHHHHc-----CCceEEEeccCCCCCccc
Confidence            6789999999998865544 334555555544 899999999852  3455555543     233333334444443   


Q ss_pred             --HHHHHHHHhhcc---------CCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650         274 --GTAYMHGLKYAT---------GNFIIIMDADLSHHPKFIPEMIKLQ  310 (435)
Q Consensus       274 --~~a~n~g~~~a~---------~d~v~~~d~D~~~~~~~l~~~~~~~  310 (435)
                        -.-+|.|++..+         .-+|.|-|+|+.++-+.+++ ++..
T Consensus       159 rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v  205 (330)
T KOG1476|consen  159 RGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNV  205 (330)
T ss_pred             cchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcc
Confidence              367888887654         25778888889999888888 4444

>KOG2287|consensus

Probab=93.50  E-value=1.6  Score=40.85  Aligned_cols=194  Identities=11%  Similarity=0.034  Sum_probs=112.3

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhc-C---CCCeEEEEEeCCCCcc--hHHHHHHHHHHhCCceEEEecCCCCCC-
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDE-G---NYPYEIIVIDDGSPDG--TLDAAKQLQSIYGSEKIVLKPRKKKLG-  272 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~-~---~~~~eiivvdd~s~d~--t~~~~~~~~~~~~~~~i~~~~~~~n~g-  272 (435)
                      |.+-++|.+.-+.-.-++   .+++.--+ .   ......+++-.-..+.  ..+.+.+....+..  |++.....++. 
T Consensus        95 ~~lLl~V~S~~~~farR~---aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygD--Ii~~df~Dty~n  169 (349)
T KOG2287|consen   95 PELLLLVKSAPDNFARRN---AIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGD--IIQVDFEDTYFN  169 (349)
T ss_pred             ceEEEEEecCCCCHHHHH---HHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCC--EEEEecccchhc
Confidence            567777776654433333   23332222 1   1335555555444432  23444444555554  44444444443 


Q ss_pred             HH----HHHHHHHhhc-cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHH
Q psy3650         273 LG----TAYMHGLKYA-TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT  347 (435)
Q Consensus       273 ~~----~a~n~g~~~a-~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (435)
                      ..    +.+..+...| ..+||+-.|+|..+.++.|..++....++..+...|.......      ..|.-.++++-...
T Consensus       170 ltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~------p~R~~~~KwyVp~~  243 (349)
T KOG2287|consen  170 LTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAP------PIRDKTSKWYVPES  243 (349)
T ss_pred             hHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCC------CCCCCCCCCccCHH
Confidence            11    5566666655 4799999999999998888888887645677888887665421      11111111111111


Q ss_pred             HHhcCCCccccccceeeecHHHHHHhhhcccCcccc--hhhHHHHHHHHC-CCcEEEeee
Q psy3650         348 QLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV--FQMEMVIRARQY-NYTIGEVPI  404 (435)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~D~el~lr~~~~-G~~i~~~p~  404 (435)
                      ......-...++|+..++++++.+.+........+.  ||+-+..-+++. |.+-...+.
T Consensus       244 ~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~  303 (349)
T KOG2287|consen  244 EYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG  303 (349)
T ss_pred             HCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence            111223345678889999999999995433333333  788888888777 888777776

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2

Probab=93.47  E-value=0.2  Score=49.01  Aligned_cols=86  Identities=19%  Similarity=0.364  Sum_probs=54.9

Q ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHhc-CCCcEEEEeeeecCCCccCc---ccchhhhhchHHHHHHHHhCCCccccccc
Q psy3650          61 GNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYVGTGGVYGW---DFKRKLVSRGANYLTQLLLRPGVSDLTGS  136 (435)
Q Consensus        61 gd~i~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (435)
                      .||++.+|+|+.++|+.+..|+..+.+ +....++|--........-+   ...++..+.......+..++ .+.-..|+
T Consensus       202 ~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish~l~Ka~Es~fG-~VtCLPGc  280 (527)
T PF03142_consen  202 YEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISHHLQKAFESVFG-SVTCLPGC  280 (527)
T ss_pred             eEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHHHHHHHHHHHhC-ceeecCCc
Confidence            499999999999999999999999965 44555666433322221111   22234444555555555555 45666677


Q ss_pred             eehhhHHHHHH
Q psy3650         137 FRLYKKQVLEN  147 (435)
Q Consensus       137 ~~~~~~~~~~~  147 (435)
                      |.+||-+++..
T Consensus       281 fsmyR~~a~~~  291 (527)
T PF03142_consen  281 FSMYRISALMD  291 (527)
T ss_pred             ceeeeeehhcc
Confidence            88888766554

4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=93.38  E-value=0.43  Score=47.16  Aligned_cols=183  Identities=12%  Similarity=0.200  Sum_probs=95.5

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT  285 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~  285 (435)
                      +|..+ ...+..+++.+.+.    . .-+++++-....+   ++.+.+....+  .+.++..+...|.+.++..|+....
T Consensus        27 lpi~g-kpli~~~l~~l~~~----g-~~~iivvv~~~~~---~i~~~~~~~~~--~~~~~~~~~~~Gt~~si~~al~~l~   95 (482)
T PRK14352         27 HTLAG-RSMLGHVLHAAAGL----A-PQHLVVVVGHDRE---RVAPAVAELAP--EVDIAVQDEQPGTGHAVQCALEALP   95 (482)
T ss_pred             ceeCC-ccHHHHHHHHHHhc----C-CCcEEEEECCCHH---HHHHHhhccCC--ccEEEeCCCCCCcHHHHHHHHHHhc
Confidence            45444 44667777766542    1 2256555443222   22222222112  2333444555688888988988754


Q ss_pred             ---CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC-------
Q psy3650         286 ---GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG-------  354 (435)
Q Consensus       286 ---~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  354 (435)
                         .+.++++++|. .+.++.+.++++..++.+.++.+......+....+.-...   ..  ..+....-...       
T Consensus        96 ~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~---~~--g~V~~~~EKp~~~~~~~~  170 (482)
T PRK14352         96 ADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRD---QD--GEVTAIVEQKDATPSQRA  170 (482)
T ss_pred             cCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEEC---CC--CCEEEEEECCCCCHHHhh
Confidence               37899999998 5788899999998765555543322211111111000000   00  00000000000       


Q ss_pred             ccccccceeeecHHHHHHhhhcccC---cccchhhHHHHHHHHCCCcEEEeee
Q psy3650         355 VSDLTGSFRLYKKQVLENLVSSCVS---KGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~~~~~---~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ......|..+|+.+.|+++......   ....+=.|++-.+.+.|+++..++.
T Consensus       171 ~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~  223 (482)
T PRK14352        171 IREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHA  223 (482)
T ss_pred             cceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEec
Confidence            1123456789999999776321111   1112236888889999988877765

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=93.27  E-value=0.82  Score=39.93  Aligned_cols=176  Identities=13%  Similarity=0.199  Sum_probs=93.8

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc--CCEE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GNFI  289 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~--~d~v  289 (435)
                      ...+..+++.+.+    .. .-++++|-....    +.+.++....   .+.++..+...|.+.++..|+....  .+.+
T Consensus        26 kpli~~~i~~l~~----~~-i~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~v   93 (229)
T cd02540          26 KPMLEHVLDAARA----LG-PDRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLGTGHAVKQALPALKDFEGDV   93 (229)
T ss_pred             ccHHHHHHHHHHh----CC-CCeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCCCHHHHHHHHHhhccCCCeE
Confidence            4666666666544    11 236666553221    2233332221   2333445556788999999998765  6899


Q ss_pred             EEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC-------ccccccc
Q psy3650         290 IIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG-------VSDLTGS  361 (435)
Q Consensus       290 ~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  361 (435)
                      +++++|. .+.+..+.++++...+.+.++++......+....+.-.... ..+    +....-...       .....+|
T Consensus        94 li~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~----v~~~~ek~~~~~~~~~~~~~~~g  168 (229)
T cd02540          94 LVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIRDG-NGK----VLRIVEEKDATEEEKAIREVNAG  168 (229)
T ss_pred             EEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEEcC-CCC----EEEEEECCCCChHHHhhceEEeE
Confidence            9999998 47888999999887665555544322221111010000000 000    000000000       1234667


Q ss_pred             eeeecHHHHHHhhhc-cc---CcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         362 FRLYKKQVLENLVSS-CV---SKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       362 ~~~~~r~~~~~~~~~-~~---~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      ..+|+++.+.+.... ..   ...+ +=.+..-.+.+.|.++..++..
T Consensus       169 iy~~~~~~~~~~l~~~~~~~~~~~~-~~~d~~~~~~~~g~~v~~~~~~  215 (229)
T cd02540         169 IYAFDAEFLFEALPKLTNNNAQGEY-YLTDIIALAVADGLKVAAVLAD  215 (229)
T ss_pred             EEEEEHHHHHHHHHHcccccCCCcE-EHHHHHHHHHHCCCEEEEEEcC
Confidence            789998877664211 11   1122 2357777788899888877763

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=93.16  E-value=0.43  Score=39.02  Aligned_cols=62  Identities=13%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             ceEEEccCCCCCCHHHHHHHHHhhc-cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650          35 EKIVLKPRKKKLGLGTAYMHGLKYA-TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTR   97 (435)
Q Consensus        35 ~~i~~~~~~~n~g~~~a~n~gl~~a-~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~~   97 (435)
                      ..++.- .....|...++-.|+... ..++++++.+|. .++++.+..+++.+.+.+.++++...
T Consensus        60 ~~~v~~-~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~  123 (160)
T PF12804_consen   60 IKVVVD-PEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF  123 (160)
T ss_dssp             SEEEE--STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred             ceEEEe-ccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence            444432 223589999999999999 889999999999 56999999999999877888887654

...

>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni []

Probab=93.07  E-value=0.17  Score=45.16  Aligned_cols=88  Identities=23%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCc-eEEEccC--------CCCCCHHHHHHHHHhhc-cCCEEEEEcCCCCCCCCc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSE-KIVLKPR--------KKKLGLGTAYMHGLKYA-TGNFIIIMDADLSHHPKF   77 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~-~i~~~~~--------~~n~g~~~a~n~gl~~a-~gd~i~~lD~D~~~~~~~   77 (435)
                      -|.||.=+.|+|+|.|++.+|++++|.- .+.+ +.        .+......-.|.++... +.+|++=+|+|-+.++..
T Consensus       114 ~~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Y-py~v~~~n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~K  192 (347)
T PF06306_consen  114 DEGVIGYNDCTDGTEEIILEFCKKYPSFIPIKY-PYEVIIKNPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKK  192 (347)
T ss_pred             hccEEEeecCCCCHHHHHHHHHHhCcccccccC-cchhhccCCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHH
Confidence            4677777889999999999999999852 2221 11        11123445567777774 589999999999999987


Q ss_pred             HHHHHHHHhcCCCcEEEEee
Q psy3650          78 IPEMIKLQQQENLDVVTGTR   97 (435)
Q Consensus        78 l~~~~~~~~~~~~~~v~g~~   97 (435)
                      |-...-.. ....++|.-+|
T Consensus       193 L~ksfY~p-k~~~~~v~YsR  211 (347)
T PF06306_consen  193 LYKSFYIP-KNDYDVVSYSR  211 (347)
T ss_pred             Hhhhheee-ccccceEEecc
Confidence            75444333 45667776665

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=93.05  E-value=0.7  Score=39.08  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=52.7

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIK   83 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~   83 (435)
                      -+|+||-... +...+.+.+.........+.+.. ....|.+.+.-.|++++   ..|+++++++|. .++++.+..+++
T Consensus        42 ~~i~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~  119 (190)
T TIGR03202        42 SKVIVVIGEK-YAHLSWLDPYLLADERIMLVCCR-DACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLA  119 (190)
T ss_pred             CcEEEEeCCc-cchhhhhhHhhhcCCCeEEEECC-ChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHH
Confidence            4677776443 22222222221111222333332 23347888899999876   369999999999 778899999999


Q ss_pred             HHhcCCCcEEE
Q psy3650          84 LQQQENLDVVT   94 (435)
Q Consensus        84 ~~~~~~~~~v~   94 (435)
                      .+.+.+.++++
T Consensus       120 ~~~~~~~~~~~  130 (190)
T TIGR03202       120 LAKRRPDDYVA  130 (190)
T ss_pred             HHhhCCCCEEE
Confidence            88655545444

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PLN02189 cellulose synthase

Probab=92.99  E-value=0.11  Score=54.10  Aligned_cols=111  Identities=13%  Similarity=0.077  Sum_probs=65.1

Q ss_pred             eEEEccCCCCC-----CHHHHHHHHHh----hccCCEEEEEcCCCCCC-CCcHHHHHHHHhcC----CCcEEEEeeeecC
Q psy3650          36 KIVLKPRKKKL-----GLGTAYMHGLK----YATGNFIIIMDADLSHH-PKFIPEMIKLQQQE----NLDVVTGTRYVGT  101 (435)
Q Consensus        36 ~i~~~~~~~n~-----g~~~a~n~gl~----~a~gd~i~~lD~D~~~~-~~~l~~~~~~~~~~----~~~~v~g~~~~~~  101 (435)
                      +++|+..+.+-     -|++|+|..++    ...|+||+.+|+|.... |..+.+.+=.+.++    +..+|..++...+
T Consensus       499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~  578 (1040)
T PLN02189        499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDG  578 (1040)
T ss_pred             eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCC
Confidence            46666555443     48999999994    45689999999999774 58888888777654    4566777765543


Q ss_pred             CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650         102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL  148 (435)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (435)
                      -+... ++.... .-++.....-+-+...+...|+..++||+++-..
T Consensus       579 i~k~D-~Ygn~~-~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~  623 (1040)
T PLN02189        579 IDTHD-RYANRN-TVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGY  623 (1040)
T ss_pred             CCCCC-ccCCcc-ceeeeeeecccccCCCccccccCceeeeeeeecc
Confidence            32211 111111 1111112222223333334444457888888643

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=92.79  E-value=1.3  Score=37.20  Aligned_cols=97  Identities=9%  Similarity=0.126  Sum_probs=60.8

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....+..+++.+...      .-+|+|+-+...   ...    .....++.++.-..+...|...++..|+.....+++
T Consensus        25 ~g~pll~~~l~~l~~~------~~~ivv~~~~~~---~~~----~~~~~~~~~i~~~~~~~~g~~~si~~al~~~~~~~v   91 (186)
T TIGR02665        25 GGKPLIEHVLARLRPQ------VSDLAISANRNP---ERY----AQAGFGLPVVPDALADFPGPLAGILAGLRWAGTDWV   91 (186)
T ss_pred             CCEEHHHHHHHHHHhh------CCEEEEEcCCCH---HHH----hhccCCCcEEecCCCCCCCCHHHHHHHHHhcCCCeE
Confidence            3455667777666432      126676654321   111    111112233321123457888999999998888999


Q ss_pred             EEEeCCC-CCCCccHHHHHHHHhcCCCceEE
Q psy3650         290 IIMDADL-SHHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       290 ~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      +++++|. .++++.+.++++.+.+.+.+++.
T Consensus        92 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  122 (186)
T TIGR02665        92 LTVPCDTPFLPEDLVARLAAALEASDADIAV  122 (186)
T ss_pred             EEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence            9999998 58999999999988654555555

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=92.73  E-value=1.5  Score=37.01  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=61.1

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cC
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TG  286 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~  286 (435)
                      +....++.+++.+.+    . ..-+++||-+...+. .+.+.+.......+.++.... ...|.+.++..|++.+   ..
T Consensus        24 ~g~~ll~~~i~~~~~----~-~~~~i~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~G~~~si~~gl~~~~~~~~   96 (190)
T TIGR03202        24 GETTLGSASLKTALS----S-RLSKVIVVIGEKYAH-LSWLDPYLLADERIMLVCCRD-ACEGQAHSLKCGLRKAEAMGA   96 (190)
T ss_pred             CCccHHHHHHHHHHh----C-CCCcEEEEeCCccch-hhhhhHhhhcCCCeEEEECCC-hhhhHHHHHHHHHHHhccCCC
Confidence            455556666654432    1 122677776543222 122222111112233333332 2457889999999976   46


Q ss_pred             CEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650         287 NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       287 d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      |+++++++|.- ++++.+..+++.+.+.+.+++.
T Consensus        97 d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~  130 (190)
T TIGR03202        97 DAVVILLADQPFLTADVINALLALAKRRPDDYVA  130 (190)
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEE
Confidence            99999999995 9999999999987654445444

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>KOG3917|consensus

Probab=92.56  E-value=0.15  Score=42.84  Aligned_cols=156  Identities=17%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             cCCCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650         194 SGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL  273 (435)
Q Consensus       194 ~~~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~  273 (435)
                      ...+...++.+++|...+-+.+...+..+.+.+......-.|+|++--  |                .+       .+..
T Consensus        68 ~~~aS~HklavlVPfRdRfEELl~FvPHM~~FL~rq~v~HHI~vlNQv--D----------------~f-------RFNR  122 (310)
T KOG3917|consen   68 QTGASYHKLAVLVPFRDRFEELLEFVPHMSKFLHRQNVSHHILVLNQV--D----------------PF-------RFNR  122 (310)
T ss_pred             ccCccceeEEEEechHHHHHHHHHhhHHHHHHHhhcCcceEEEEeecc--C----------------cc-------eech
Confidence            333456799999999977666666666666666655555566665310  0                11       2345


Q ss_pred             HHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650         274 GTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL  350 (435)
Q Consensus       274 ~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
                      ++-+|.|+..|+  .||+++-|-|.. +.++..-         +.-...|++.......  .|.                
T Consensus       123 AsLINVGf~eas~~~DYiaMhDVDLLPlN~el~Y---------~fP~~~gp~HiasP~l--HPk----------------  175 (310)
T KOG3917|consen  123 ASLINVGFNEASRLCDYIAMHDVDLLPLNPELPY---------DFPGIGGPRHIASPQL--HPK----------------  175 (310)
T ss_pred             hhheecchhhhcchhceeeecccccccCCCCCCC---------CCCccCCcccccCccc--Cch----------------
Confidence            777888888875  599999999975 4433211         1111223222211110  000                


Q ss_pred             cCCCccccccceeeecHHHHHHhhhc-ccCcccc-hhhHHHHHHHHCCCcEEEee
Q psy3650         351 LRPGVSDLTGSFRLYKKQVLENLVSS-CVSKGYV-FQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       351 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~-~D~el~lr~~~~G~~i~~~p  403 (435)
                        ..+...-||..+++++-++++.+. ....+++ ||.|+.+|+..+|..+..+.
T Consensus       176 --YHY~~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRps  228 (310)
T KOG3917|consen  176 --YHYEKFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRPS  228 (310)
T ss_pred             --hhhhhhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEeccc
Confidence              001112467789999999999553 3344554 89999999999999876544

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=92.55  E-value=4.3  Score=35.37  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=36.1

Q ss_pred             CHHHHHHHHHhhc-cCCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650         272 GLGTAYMHGLKYA-TGNFIIIMDADLS-HHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       272 g~~~a~n~g~~~a-~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~  314 (435)
                      +.+.++..|+... ..|+++++++|.- ++++.+.++++.+.+.+
T Consensus        81 ~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~  125 (227)
T PRK00155         81 ERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG  125 (227)
T ss_pred             hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence            4688888888876 5789999999985 99999999999886543

>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional

Probab=92.49  E-value=0.66  Score=44.22  Aligned_cols=132  Identities=11%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHH-HHHHHHHHH
Q psy3650         271 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK-LVSRGANYL  346 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  346 (435)
                      .|.+.|+..+.....   .+.++++++|...+. .+.++++.....+.++.......+......+..... -..+... +
T Consensus        99 ~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~g~V~~-~  176 (380)
T PRK05293         99 KGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDENMRIVE-F  176 (380)
T ss_pred             CCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCCCcEEE-E
Confidence            688899988888764   478999999997655 567777765555555444322111111000000000 0000000 0


Q ss_pred             HHHhcCCCccccccceeeecHHHHHHhhhcc---cCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         347 TQLLLRPGVSDLTGSFRLYKKQVLENLVSSC---VSKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ..............|..+|+++++.++....   ......+-.+++-.+.+.|.++...+.
T Consensus       177 ~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v~~~~~  237 (380)
T PRK05293        177 EEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKLYAYPF  237 (380)
T ss_pred             EeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeEEEEEe
Confidence            0000011122345678899999987763211   111112224677777888888776654

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=92.29  E-value=0.32  Score=41.79  Aligned_cols=90  Identities=19%  Similarity=0.306  Sum_probs=65.4

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC-CceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG-SEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      ..+.+.+.+++|.+.     ..-|+++|-+|-.   .+.++++..+++ ..+++.-+..+..+-+..+-.|.+.+.++ +
T Consensus        30 gr~ii~~~i~~L~~~-----gi~e~vvV~~g~~---~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-f  100 (239)
T COG1213          30 GREIIYRTIENLAKA-----GITEFVVVTNGYR---ADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-F  100 (239)
T ss_pred             CeEeHHHHHHHHHHc-----CCceEEEEeccch---HHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-E
Confidence            445677777776542     3449999987754   345667777777 55666555544444467788888888888 7


Q ss_pred             EEEeCCCCCCCccHHHHHHH
Q psy3650         290 IIMDADLSHHPKFIPEMIKL  309 (435)
Q Consensus       290 ~~~d~D~~~~~~~l~~~~~~  309 (435)
                      +++++|..++|..+++++++
T Consensus       101 ii~~sD~vye~~~~e~l~~a  120 (239)
T COG1213         101 ILVMSDHVYEPSILERLLEA  120 (239)
T ss_pred             EEEeCCEeecHHHHHHHHhC
Confidence            88999999999999999975

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=92.19  E-value=1.8  Score=40.79  Aligned_cols=185  Identities=11%  Similarity=0.101  Sum_probs=94.2

Q ss_pred             eccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCC-CCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650         207 PTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDG-SPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT  285 (435)
Q Consensus       207 p~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~-s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~  285 (435)
                      |.-+. ..+..++..+.+.    . --+++++-.. ..+...+.+.+.  ......+.++..+...|.+.++..+++...
T Consensus        26 pv~g~-pli~~~l~~l~~~----g-i~~i~vv~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~G~~~al~~a~~~l~   97 (353)
T TIGR01208        26 PVANK-PILQYAIEDLAEA----G-ITDIGIVVGPVTGEEIKEIVGEG--ERFGAKITYIVQGEPLGLAHAVYTARDFLG   97 (353)
T ss_pred             EECCE-eHHHHHHHHHHHC----C-CCEEEEEeCCCCHHHHHHHHhcc--cccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            44444 6677777666542    1 2266666543 222222222210  111234445445556788999999988775


Q ss_pred             CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCccccccce
Q psy3650         286 GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDLTGSF  362 (435)
Q Consensus       286 ~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  362 (435)
                      .+-++++.+|..++ ..+.++++.+.+++.++.+......+...  +..... ...  ..+....-   ...-.....|.
T Consensus        98 ~~~~li~~gD~~~~-~~l~~l~~~~~~~~~d~ti~~~~~~~~~~--~g~~~~-~~~--~~v~~~~ekp~~~~~~~~~~Gi  171 (353)
T TIGR01208        98 DDDFVVYLGDNLIQ-DGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVL-EDG--KRILKLVEKPKEPPSNLAVVGL  171 (353)
T ss_pred             CCCEEEEECCeecC-ccHHHHHHHHHhcCCCcEEEEEECCChhh--CeEEEE-cCC--CcEEEEEECCCCCCccceEEEE
Confidence            44456778998775 66888888776666665444322221110  111000 000  00000000   00112235567


Q ss_pred             eeecHHHHHHhhhccc-CcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         363 RLYKKQVLENLVSSCV-SKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       363 ~~~~r~~~~~~~~~~~-~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      .+|++.+++.+..... ..+..+-.+++-.+.+.|.++...+..
T Consensus       172 y~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~  215 (353)
T TIGR01208       172 YMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVT  215 (353)
T ss_pred             EEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeC
Confidence            8999987776632111 111122356777788899888776653

Alternate name: dTDP-D-glucose synthase

>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2

Probab=92.18  E-value=5.8  Score=36.79  Aligned_cols=53  Identities=13%  Similarity=0.186  Sum_probs=39.4

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQL  253 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~  253 (435)
                      .+.+.|||-++|+...|+.++++|.+.  ..-...-+|+.=|.-.++.-++++.+
T Consensus        30 ~~~~vivvqVH~r~~yl~~li~sL~~~--~~I~~~llifSHd~~~~ein~~v~~I   82 (356)
T PF05060_consen   30 NDSIVIVVQVHNRPEYLKLLIDSLSQA--RGIEEALLIFSHDFYSEEINDLVQSI   82 (356)
T ss_pred             CCCEEEEEEECCcHHHHHHHHHHHHHh--hCccceEEEEeccCChHHHHHHHHhC
Confidence            577999999999999999999999874  22334566666677666666666543

4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=92.07  E-value=3.2  Score=39.16  Aligned_cols=182  Identities=11%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|.- ....++..++.+.+.     .--|++++-.-    ..+.++++...  ...+++.+.......|.+.++..+.+.
T Consensus        27 lpI~-gkPii~~~l~~L~~~-----Gv~eivi~~~y----~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~   96 (358)
T COG1208          27 LPIA-GKPLIEYVLEALAAA-----GVEEIVLVVGY----LGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDL   96 (358)
T ss_pred             ceeC-CccHHHHHHHHHHHC-----CCcEEEEEecc----chHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHh
Confidence            3444 345667777766542     23377777222    23333333332  224578777788889999999999999


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC-----CCcccc
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR-----PGVSDL  358 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  358 (435)
                      ..++-++++++|...+.+ +..+++..+++.................+  ....-...  .........     ..-...
T Consensus        97 l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~G--vv~~~~~~--~~v~~f~ekp~~~~~~~~~i  171 (358)
T COG1208          97 LGGDDFLVLNGDVLTDLD-LSELLEFHKKKGALATIALTRVLDPSEFG--VVETDDGD--GRVVEFREKPGPEEPPSNLI  171 (358)
T ss_pred             cCCCcEEEEECCeeeccC-HHHHHHHHHhccCccEEEEEecCCCCcCc--eEEecCCC--ceEEEEEecCCCCCCCCceE
Confidence            988899999999999988 99999988765333333222222111000  00000000  001111111     111345


Q ss_pred             ccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         359 TGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      .+|..+|++++|+.+   .....+.+..|++-++.+.|.++.-.+..
T Consensus       172 n~Giyi~~~~v~~~i---~~~~~~~~~~~~~~~l~~~~~~v~~~~~~  215 (358)
T COG1208         172 NAGIYIFDPEVFDYI---EKGERFDFEEELLPALAAKGEDVYGYVFE  215 (358)
T ss_pred             EeEEEEECHHHhhhc---ccCCcccchhhHHHHHHhCCCcEEEEEeC
Confidence            778899999999944   22233333337888888888855555543

>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF)

Probab=92.06  E-value=13  Score=36.66  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=53.6

Q ss_pred             EEEEeCCC-CcChHHHHHHHHHHhCCceEEEccCCCCCCH-HHHHHHHHhhc------cCCEEEEEcCCCCCCCCcHHHH
Q psy3650          10 IIVIDDGS-PDGTLDAAKQLQSIYGSEKIVLKPRKKKLGL-GTAYMHGLKYA------TGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus        10 iivvDd~S-~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~-~~a~n~gl~~a------~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      ||||-||. +++..+.+++++.     .++   .-+|.|. -+|+..|+...      ..|-|+++++-..-|-.-+..+
T Consensus         1 iv~VsN~~l~~~~~~~L~~~~~-----~vi---~R~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~   72 (498)
T PF05045_consen    1 IVFVSNSPLSEEDREKLKDLCD-----KVI---QRENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEM   72 (498)
T ss_pred             CEEEECCCCCHHHHHHHHHHHH-----HhE---EeccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHH
Confidence            45555554 5555566666543     233   2467776 47788888764      3588999988776555679999


Q ss_pred             HHHHhcCCCcEEEEee
Q psy3650          82 IKLQQQENLDVVTGTR   97 (435)
Q Consensus        82 ~~~~~~~~~~~v~g~~   97 (435)
                      .+.+.+.++|+..-..
T Consensus        73 f~~~~~~~~DfwGlT~   88 (498)
T PF05045_consen   73 FERMEARDVDFWGLTE   88 (498)
T ss_pred             HHHhccCCCeEEeecC
Confidence            9999777888865443

Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=91.98  E-value=2.5  Score=37.14  Aligned_cols=179  Identities=13%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII  290 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~  290 (435)
                      ....+..+++.+.+    ...--+|+|+-+.  +..    .++...+ ++++.........|.+ .+..++.....|.++
T Consensus        26 GkPli~~~i~~l~~----~~~~~~ivv~t~~--~~i----~~~~~~~-~~~v~~~~~~~~~g~~-~~~~a~~~~~~d~~l   93 (238)
T PRK13368         26 GKPMIQHVYERAAQ----AAGVEEVYVATDD--QRI----EDAVEAF-GGKVVMTSDDHLSGTD-RLAEVMLKIEADIYI   93 (238)
T ss_pred             CcCHHHHHHHHHHh----cCCCCeEEEECCh--HHH----HHHHHHc-CCeEEecCccCCCccH-HHHHHHHhCCCCEEE
Confidence            34455555655544    1112366666432  222    2333322 3355444333333444 455566665568999


Q ss_pred             EEeCCC-CCCCccHHHHHHHHhcCCC-ceEEeeeEECCCce---ecc-chhHHHHHHHHHHHHH-Hh-cCCC---ccccc
Q psy3650         291 IMDADL-SHHPKFIPEMIKLQQQENL-DVVTGTRYVGTGGV---YGW-DFKRKLVSRGANYLTQ-LL-LRPG---VSDLT  359 (435)
Q Consensus       291 ~~d~D~-~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~-~~-~~~~---~~~~~  359 (435)
                      ++++|. .+.++.+.++++.+...+. +++...........   ++. .....-..+...+... .. ..+.   .....
T Consensus        94 v~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~n  173 (238)
T PRK13368         94 NVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSPIPSRRDGESARYLKH  173 (238)
T ss_pred             EEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCCCCCCCCCCCCceeEE
Confidence            999998 5889999999998854443 43333321110000   000 0000000000000000 00 0111   22467


Q ss_pred             cceeeecHHHHHHhhhcccCcc--cchhhHHHHHHHHCCCcEEEee
Q psy3650         360 GSFRLYKKQVLENLVSSCVSKG--YVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       360 ~~~~~~~r~~~~~~~~~~~~~~--~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      +|+.+|++++|+.+... ....  ..+..++. ++...|.++.-++
T Consensus       174 ~giy~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~~~g~~v~~~~  217 (238)
T PRK13368        174 VGIYAFRRDVLQQFSQL-PETPLEQIESLEQL-RALEHGEKIRMVE  217 (238)
T ss_pred             EEEEEeCHHHHHHHHcC-CCChhhhhhhHHHH-HHHHCCCceEEEE
Confidence            88999999999987331 1111  11222454 7777888776554

>PLN02458 transferase, transferring glycosyl groups

Probab=91.82  E-value=0.33  Score=43.72  Aligned_cols=73  Identities=12%  Similarity=0.070  Sum_probs=47.0

Q ss_pred             CCCeEEEEEeCCCC-cChHHHHHHHHHHhCCceEEEccCCCCC-----CHHHHHHHHHhhcc----CCEEEEEcCCCCCC
Q psy3650           5 NYPYEIIVIDDGSP-DGTLDAAKQLQSIYGSEKIVLKPRKKKL-----GLGTAYMHGLKYAT----GNFIIIMDADLSHH   74 (435)
Q Consensus         5 ~~~~EiivvDd~S~-d~t~~i~~~~~~~~~~~~i~~~~~~~n~-----g~~~a~n~gl~~a~----gd~i~~lD~D~~~~   74 (435)
                      .+|.-+|||+|++. ..|.+++++.     .+...++...+|.     .....+|.||.+.+    .-+|.|.|+|..++
T Consensus       142 p~pL~WIVVEd~~~t~~va~lLrrs-----Gl~y~HL~~k~~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYs  216 (346)
T PLN02458        142 PPPLLWIVVEGQSDSEEVSEMLRKT-----GIMYRHLVFKENFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYD  216 (346)
T ss_pred             CCCceEEEEeCCCCCHHHHHHHHHc-----CCceEEeccCCCCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCccc
Confidence            34688999998762 2233444432     2334444333332     12466999999886    37999999999998


Q ss_pred             CCcHHHHH
Q psy3650          75 PKFIPEMI   82 (435)
Q Consensus        75 ~~~l~~~~   82 (435)
                      -+.+++|-
T Consensus       217 l~LFeEmR  224 (346)
T PLN02458        217 LDFFDEIR  224 (346)
T ss_pred             HHHHHHHh
Confidence            87777743

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=91.80  E-value=0.18  Score=44.74  Aligned_cols=184  Identities=14%  Similarity=0.213  Sum_probs=100.2

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC--CceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG--SEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|..+....+...++.+.+    .. .-++|+|-.+...   +.+.+......  .+++.++..+...|.+.|+..+...
T Consensus        25 l~i~g~~pli~~~l~~l~~----~g-~~~ii~V~~~~~~---~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~   96 (248)
T PF00483_consen   25 LPIGGKYPLIDYVLENLAN----AG-IKEIIVVVNGYKE---EQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDF   96 (248)
T ss_dssp             SEETTEEEHHHHHHHHHHH----TT-CSEEEEEEETTTH---HHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHH
T ss_pred             ceecCCCcchhhhhhhhcc----cC-CceEEEEEeeccc---ccccccccccccccccceeeecccccchhHHHHHHHHH
Confidence            4445554566676766654    12 2365555443322   22333333222  2356666677778999999999999


Q ss_pred             ccCCE----EEEEeCCCCCCCccHHHHHHHHhcCCCc--eEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC---
Q psy3650         284 ATGNF----IIIMDADLSHHPKFIPEMIKLQQQENLD--VVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG---  354 (435)
Q Consensus       284 a~~d~----v~~~d~D~~~~~~~l~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  354 (435)
                      ...+.    ++++.+|...+. .+..+++...+.+.+  +.+...........+  ....- ..  +.+.+..-...   
T Consensus        97 i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g--~v~~d-~~--~~V~~~~EKP~~~~  170 (248)
T PF00483_consen   97 IEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYG--VVEVD-ED--GRVIRIVEKPDNPN  170 (248)
T ss_dssp             HTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSE--EEEEE-TT--SEEEEEEESCSSHS
T ss_pred             hhhccccceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccce--eeeec-cc--eeEEEEeccCcccc
Confidence            87755    999999998777 688888877655542  333322222111100  00000 00  00011111111   


Q ss_pred             -ccccccceeeecHHHHHHhhh--cccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650         355 -VSDLTGSFRLYKKQVLENLVS--SCVSKGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       355 -~~~~~~~~~~~~r~~~~~~~~--~~~~~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                       -....+|+.+|++++|..+..  ........+-.|+.-.+.+.|.++....
T Consensus       171 ~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~  222 (248)
T PF00483_consen  171 ASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFI  222 (248)
T ss_dssp             HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEE
Confidence             123566778999999998832  1111222334677888889888775544

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=91.68  E-value=7.2  Score=34.10  Aligned_cols=43  Identities=12%  Similarity=0.139  Sum_probs=34.8

Q ss_pred             CHHHHHHHHHhhcc-CCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650         272 GLGTAYMHGLKYAT-GNFIIIMDADLS-HHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       272 g~~~a~n~g~~~a~-~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~  314 (435)
                      +...++..|+.... .++++++|+|.- ++++.+.++++.+.+.+
T Consensus        83 ~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~  127 (230)
T PRK13385         83 ERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYG  127 (230)
T ss_pred             hHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence            44588888888763 588999999995 99999999999886544

>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum

Probab=91.68  E-value=4.2  Score=37.01  Aligned_cols=114  Identities=13%  Similarity=0.217  Sum_probs=66.5

Q ss_pred             CCcceEEEEeccCC--CCChHHHHHHHHHHhhcCCC-CeEE-EEEeCCCCcchHHHHHHHHHHhCC----ceEEEecC--
Q psy3650         198 VKNKYTVLLPTYNE--KENLPIIVYLITKYMDEGNY-PYEI-IVIDDGSPDGTLDAAKQLQSIYGS----EKIVLKPR--  267 (435)
Q Consensus       198 ~~~~isivip~~n~--~~~l~~~l~~l~~~~~~~~~-~~ei-ivvdd~s~d~t~~~~~~~~~~~~~----~~i~~~~~--  267 (435)
                      ..++++|.||+-.+  ...|..+|.+|...+..... .+-| |.+-|..++....+.+.+...++.    -.+.++..  
T Consensus        50 ~~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~  129 (297)
T PF04666_consen   50 TGKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPP  129 (297)
T ss_pred             CCCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEeccc
Confidence            34569999999765  45788889998877664332 2333 333333333334444444322210    01222211  


Q ss_pred             ------------------------CCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcC
Q psy3650         268 ------------------------KKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE  313 (435)
Q Consensus       268 ------------------------~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~  313 (435)
                                              .+|.-++..++.+.  ..|+|++.+.+|....++++..+...+...
T Consensus       130 ~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~--~~~~YyL~LEDDVia~~~f~~~i~~~v~~~  197 (297)
T PF04666_consen  130 SYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQ--NLGDYYLQLEDDVIAAPGFLSRIKRFVEAW  197 (297)
T ss_pred             ccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHH--hcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence                                    12333334444332  368999999999999999999999988653

N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=91.45  E-value=3  Score=37.70  Aligned_cols=110  Identities=12%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH-hCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI-YGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      .+|..+....+..+++.+...    ...-+|+||-+..   ..+.+++.... .+.  +.++.++...|.+.|+..++..
T Consensus        26 ll~l~g~~~li~~~l~~l~~~----~~~~~i~vvt~~~---~~~~v~~~l~~~~~~--~~ii~ep~~~gTa~ai~~a~~~   96 (274)
T cd02509          26 FLKLFGDKSLLQQTLDRLKGL----VPPDRILVVTNEE---YRFLVREQLPEGLPE--ENIILEPEGRNTAPAIALAALY   96 (274)
T ss_pred             EeEcCCCCcHHHHHHHHHhcC----CCCCcEEEEechH---HHHHHHHHHhhcCCC--ceEEECCCCCCcHHHHHHHHHH
Confidence            356666566677777766442    1122777776531   22233332222 233  3334355567888888888776


Q ss_pred             cc----CCEEEEEeCCCCCC-CccHHHHHHHHh---cCCCceEEeeeE
Q psy3650         284 AT----GNFIIIMDADLSHH-PKFIPEMIKLQQ---QENLDVVTGTRY  323 (435)
Q Consensus       284 a~----~d~v~~~d~D~~~~-~~~l~~~~~~~~---~~~~~~v~~~~~  323 (435)
                      ..    .++++++.+|..+. .+.+.+++....   +.+..+..|...
T Consensus        97 ~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p  144 (274)
T cd02509          97 LAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKP  144 (274)
T ss_pred             HHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence            53    47999999998765 344544443221   244555555443

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=91.44  E-value=0.93  Score=42.89  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=61.7

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....++.+++.+....      -+|+++-++..+    .+...   .+...+..-..+...|...++..|++....+++
T Consensus        30 ~Gkpll~~~i~~l~~~~------~~iivvv~~~~~----~~~~~---~~~~~~i~d~~~g~~G~~~si~~gl~~~~~~~v   96 (366)
T PRK14489         30 GGKPLIERVVDRLRPQF------ARIHLNINRDPA----RYQDL---FPGLPVYPDILPGFQGPLSGILAGLEHADSEYL   96 (366)
T ss_pred             CCeeHHHHHHHHHHhhC------CEEEEEcCCCHH----HHHhh---ccCCcEEecCCCCCCChHHHHHHHHHhcCCCcE
Confidence            45566677776664321      266664443221    12221   122233221222225788899999999888999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhcCCCceEEe
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      +++++|.- ++++.+.+++..+...+.+++..
T Consensus        97 lv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~  128 (366)
T PRK14489         97 FVVACDTPFLPENLVKRLSKALAIEGADIAVP  128 (366)
T ss_pred             EEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence            99999984 89999999999876666676654

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=91.31  E-value=0.6  Score=39.13  Aligned_cols=52  Identities=15%  Similarity=0.258  Sum_probs=42.5

Q ss_pred             CCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650          44 KKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG   95 (435)
Q Consensus        44 ~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g   95 (435)
                      ...|...+...|++.+.  .|+++++.+|. .++++.+..+++.+.+++.++++.
T Consensus        72 ~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~  126 (186)
T cd04182          72 WEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVAP  126 (186)
T ss_pred             hhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence            34688899999999887  79999999999 678899999999886555555554

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=91.14  E-value=4.1  Score=37.07  Aligned_cols=179  Identities=13%  Similarity=0.097  Sum_probs=91.7

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      .+|+++. ..+...|..+...    . --+|++|.....  . +.++++...  .-++++.+...++..|.+.|+..+..
T Consensus        24 Llpv~gk-PmI~~~L~~l~~a----G-i~~I~iv~~~~~--~-~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~   94 (286)
T TIGR01207        24 LLPIYDK-PMIYYPLSTLMLA----G-IRDILIISTPQD--T-PRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGED   94 (286)
T ss_pred             eeEECCE-EhHHHHHHHHHHC----C-CCEEEEEecCCc--H-HHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHH
Confidence            5777775 6677777666541    1 236766643222  1 122232221  12345666666677899999999999


Q ss_pred             hccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCccccc
Q psy3650         283 YATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDLT  359 (435)
Q Consensus       283 ~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  359 (435)
                      ....+-++++.+|+.+....+..+++...+.+.++.+......+...  +.... +...  ..+.+..-   ...-....
T Consensus        95 ~l~~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~~p~~--yGvv~-~d~~--g~V~~i~EKp~~~~s~~~~  169 (286)
T TIGR01207        95 FIGGDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVSDPER--YGVVE-FDSN--GRAISIEEKPAQPKSNYAV  169 (286)
T ss_pred             HhCCCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEccCHHH--CceEE-ECCC--CeEEEEEECCCCCCCCEEE
Confidence            87654344456887766677888888765555554333222221110  00000 0000  00000000   01112345


Q ss_pred             cceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCC
Q psy3650         360 GSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNY  397 (435)
Q Consensus       360 ~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~  397 (435)
                      .|..+|+.++++.+...... .+-.+-.++.-.+.+.|.
T Consensus       170 ~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~  208 (286)
T TIGR01207       170 TGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGR  208 (286)
T ss_pred             EEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCC
Confidence            67789999998766322111 111233577777777774

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=90.97  E-value=4.7  Score=36.89  Aligned_cols=143  Identities=12%  Similarity=0.158  Sum_probs=74.4

Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCC-------ccHHHHHHHHhcCCCceEEeeeEECCCceec
Q psy3650         259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHP-------KFIPEMIKLQQQENLDVVTGTRYVGTGGVYG  331 (435)
Q Consensus       259 ~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~-------~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~  331 (435)
                      .+++.++.+++..|.+.|+..+......+-++++.+|...++       -.+.+|++...+++..++.......+...  
T Consensus        96 ~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~--  173 (297)
T TIGR01105        96 GVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSE--  173 (297)
T ss_pred             CceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCCCcc--
Confidence            345767667778999999999999875433445559987654       27888888765445554444333212111  


Q ss_pred             cchhHH---HHHHH-HHHHHHHhcCC------CccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEE
Q psy3650         332 WDFKRK---LVSRG-ANYLTQLLLRP------GVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIG  400 (435)
Q Consensus       332 ~~~~~~---~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~  400 (435)
                      +.....   ..... ...+....-..      ......+|..+|++++|+.+...... .+-.+-.|+.-.+.+.| ++.
T Consensus       174 yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~ltd~i~~l~~~~-~v~  252 (297)
T TIGR01105       174 YSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQ-SVD  252 (297)
T ss_pred             ceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHHHHHHHHHhcC-CEE
Confidence            111100   00000 00000100010      11245677899999999987332211 11112345555666655 666


Q ss_pred             Eeee
Q psy3650         401 EVPI  404 (435)
Q Consensus       401 ~~p~  404 (435)
                      -.+.
T Consensus       253 ~~~~  256 (297)
T TIGR01105       253 AMLM  256 (297)
T ss_pred             EEEe
Confidence            5554

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=90.89  E-value=3.1  Score=35.50  Aligned_cols=89  Identities=12%  Similarity=0.185  Sum_probs=57.1

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....++.+++.+....      -+|+|+-+..     +..+.+..  ..+.++ .......|...++..|++....+++
T Consensus        31 ~g~~ll~~~i~~l~~~~------~~ivvv~~~~-----~~~~~~~~--~~~~~i-~~~~~~~G~~~si~~~l~~~~~~~v   96 (200)
T PRK02726         31 QGVPLLQRVARIAAACA------DEVYIITPWP-----ERYQSLLP--PGCHWL-REPPPSQGPLVAFAQGLPQIKTEWV   96 (200)
T ss_pred             CCEeHHHHHHHHHHhhC------CEEEEECCCH-----HHHHhhcc--CCCeEe-cCCCCCCChHHHHHHHHHhCCCCcE
Confidence            44556677776664321      2666664321     12222211  122322 2223346888999999999888999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhc
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQ  312 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~  312 (435)
                      +++++|.- ++++.+..+++...+
T Consensus        97 lv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         97 LLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhhc
Confidence            99999996 899999999998754

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=90.77  E-value=1.5  Score=36.88  Aligned_cols=50  Identities=16%  Similarity=0.187  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHHh-hccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650          46 LGLGTAYMHGLK-YATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG   95 (435)
Q Consensus        46 ~g~~~a~n~gl~-~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g   95 (435)
                      .|.+.+...|++ ....++++++++|. .++++.+..+++.....+.++++.
T Consensus        74 ~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~  125 (188)
T TIGR03310        74 EGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP  125 (188)
T ss_pred             cCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence            578888888888 45579999999999 578899999998876555555544

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function

Probab=90.69  E-value=3.2  Score=37.61  Aligned_cols=109  Identities=16%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             ceEEEE-eccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC------------
Q psy3650         201 KYTVLL-PTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR------------  267 (435)
Q Consensus       201 ~isivi-p~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~------------  267 (435)
                      .++|++ |.|..+.....+++-|.-....  ..-.+++-+++++++..++|+.+.+. ..+.+...+.            
T Consensus         2 ~~~vCv~pl~~~~~~~~~l~e~ie~~~~~--G~~~~~~Y~~~~~~~~~~vL~~Y~~~-g~v~~~~w~~~~~~~~~~~~~~   78 (285)
T PF01697_consen    2 DFVVCVSPLFGNEDDWLQLIEWIEYHRLL--GVDHFYFYDNSSSPSVRKVLKEYERS-GYVEVIPWPLRPKFPDFPSPFP   78 (285)
T ss_pred             cEEEEccchhcccccHHHHHHHHHHHHHh--CCCEEEEEEccCCHHHHHhHHHHhhc-CeEEEEEcccccccCCcccchh
Confidence            456666 6666444333444333322111  23488888889999999999988776 3334444320            


Q ss_pred             CCC-----CCHHHHHHHHHhhc--cCCEEEEEeCCCCCCCcc----HHHHHHHHhc
Q psy3650         268 KKK-----LGLGTAYMHGLKYA--TGNFIIIMDADLSHHPKF----IPEMIKLQQQ  312 (435)
Q Consensus       268 ~~n-----~g~~~a~n~g~~~a--~~d~v~~~d~D~~~~~~~----l~~~~~~~~~  312 (435)
                      ..+     .|...+.+.-+...  ..+|++++|-|..+-|..    ...+...+++
T Consensus        79 ~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~  134 (285)
T PF01697_consen   79 DPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLRE  134 (285)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhh
Confidence            011     12344555555554  359999999998743333    5666666554

The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.

>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis

Probab=90.61  E-value=3.2  Score=38.14  Aligned_cols=160  Identities=19%  Similarity=0.212  Sum_probs=72.2

Q ss_pred             eEEEEEeCCCC---cC---hHHHHHHHHHHhCCceEEEccCC---------------------CCCCHHHHHHHHHhhcc
Q psy3650           8 YEIIVIDDGSP---DG---TLDAAKQLQSIYGSEKIVLKPRK---------------------KKLGLGTAYMHGLKYAT   60 (435)
Q Consensus         8 ~EiivvDd~S~---d~---t~~i~~~~~~~~~~~~i~~~~~~---------------------~n~g~~~a~n~gl~~a~   60 (435)
                      --||||.|.+.   |.   -.+.++.|+.--.+.-+.++++.                     -+-|||.++-.|+-.|+
T Consensus        77 C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~r~~~~vHQkDp~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk  156 (381)
T PF09488_consen   77 CLIIVVSNSSREPVDRFKMEVDLLKHFCRLTRRQIIIVHQKDPGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAK  156 (381)
T ss_dssp             SEEEEEE---CSSSCHHHHHHHHHHHHHHHCT--EEEEETT-HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCccHHHHHHHHHHHHHHhhcCceEEEecCCHHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHH
Confidence            45888877776   44   33667777764333333333221                     12389999999998886


Q ss_pred             --C-CEEEEEcCCCCCCCCcHHHHH----HHHh--cCCCcEEEEeeeecCCCccCcccchhh------hhchHHHHHHHH
Q psy3650          61 --G-NFIIIMDADLSHHPKFIPEMI----KLQQ--QENLDVVTGTRYVGTGGVYGWDFKRKL------VSRGANYLTQLL  125 (435)
Q Consensus        61 --g-d~i~~lD~D~~~~~~~l~~~~----~~~~--~~~~~~v~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  125 (435)
                        | +||-|+|+|..++ +.+-+.+    ..+.  +.++.+|=-.+...+.-..+.-+.+++      .++..+.+....
T Consensus       157 ~~g~~YVGFvDADNyiP-GaV~EYvk~yAAGf~ms~spytMVRi~W~~KPKv~~~~lyF~kwGRvSeitN~~LN~L~s~~  235 (381)
T PF09488_consen  157 APGKRYVGFVDADNYIP-GAVNEYVKDYAAGFAMSESPYTMVRIHWRSKPKVVKGELYFKKWGRVSEITNRYLNRLISAI  235 (381)
T ss_dssp             HTT-SEEEE--TTBS-H-HHHHHHHHHHHHHHHC-SSSCEEEEEE------TT---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCceEeEeeccCCCc-chHHHHHHHHHhhhcccCCCceEEEEEecCCCceecCcEEEeecccccHHHHHHHHHHhccc
Confidence              3 9999999998554 4444433    3332  345555533332222221222233333      222222222222


Q ss_pred             hCCC--c-cccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhc
Q psy3650         126 LRPG--V-SDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYN  171 (435)
Q Consensus       126 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g  171 (435)
                      .+..  + .....|=-+++-++-..+   .+..+|..+ +++...+-+.|
T Consensus       236 ~gfet~ii~TgNAGEHAMTm~LA~~l---~~atGYaIEPy~~V~llE~fg  282 (381)
T PF09488_consen  236 TGFETEIIKTGNAGEHAMTMKLAEKL---RYATGYAIEPYEYVYLLERFG  282 (381)
T ss_dssp             HSS-------TT-SSEEEEHHHHTTS----EESCCCHHHHHHHHHHHHHS
T ss_pred             cCCCCceEEccCchhhhhhHHHHHhC---CcccCccccchHHHHHHHHhC
Confidence            2222  1 222233446777777666   344566554 55555444444

Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []

Probab=90.61  E-value=0.45  Score=42.32  Aligned_cols=114  Identities=8%  Similarity=0.009  Sum_probs=57.2

Q ss_pred             cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceee
Q psy3650         285 TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL  364 (435)
Q Consensus       285 ~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
                      ..+|.+++|+|+.+..+.|.+++..+. +..++.+|.+........    ......     ......+.. ...+|+..+
T Consensus        86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~-~~~~~yiG~~~~~~~~~~----~~~~~~-----~~~~~~~~~-f~~GGaG~v  154 (252)
T PF02434_consen   86 DKDWFCFADDDTYVNVENLRRLLSKYD-PSEPIYIGRPSGDRPIEI----IHRFNP-----NKSKDSGFW-FATGGAGYV  154 (252)
T ss_dssp             T-SEEEEEETTEEE-HHHHHHHHTTS--TTS--EEE-EE--------------------------------EE-GGG-EE
T ss_pred             CceEEEEEeCCceecHHHHHHHHhhCC-CccCEEeeeeccCcccee----eccccc-----cccCcCceE-eeCCCeeHH
Confidence            569999999999998888888888763 566788887755421100    000000     000011111 224455589


Q ss_pred             ecHHHHHHhhh-----cccC----cccchhhHHHHHHHH-CCCcEEEeeeEEeec
Q psy3650         365 YKKQVLENLVS-----SCVS----KGYVFQMEMVIRARQ-YNYTIGEVPISFVDR  409 (435)
Q Consensus       365 ~~r~~~~~~~~-----~~~~----~~~~~D~el~lr~~~-~G~~i~~~p~~~~~~  409 (435)
                      ++|.+++++..     ....    ....+|+.|..-+.. .|.++...|.-..++
T Consensus       155 lSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~  209 (252)
T PF02434_consen  155 LSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHL  209 (252)
T ss_dssp             EEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SS
T ss_pred             HhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccC
Confidence            99999999931     1111    134589999888888 999998887655444

It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.

>PLN02195 cellulose synthase A

Probab=90.42  E-value=0.32  Score=50.55  Aligned_cols=111  Identities=13%  Similarity=0.032  Sum_probs=63.8

Q ss_pred             eEEEccCCCCC-----CHHHHHHHHHhhc----cCCEEEEEcCCCCCCC-CcHHHHHHHHhcC----CCcEEEEeeeecC
Q psy3650          36 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADLSHHP-KFIPEMIKLQQQE----NLDVVTGTRYVGT  101 (435)
Q Consensus        36 ~i~~~~~~~n~-----g~~~a~n~gl~~a----~gd~i~~lD~D~~~~~-~~l~~~~~~~~~~----~~~~v~g~~~~~~  101 (435)
                      +++|+..+.+-     -|++|+|.+++.+    .++||+.+|+|....+ +++.+.+=.+.++    +..+|..++....
T Consensus       420 ~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~~~g~~va~VQ~PQ~F~~  499 (977)
T PLN02195        420 RLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDPVVGRDVCYVQFPQRFDG  499 (977)
T ss_pred             eeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCcccCCeeEEEcCCcccCC
Confidence            46666444443     4889999999754    4899999999986555 6888888777554    3346766665443


Q ss_pred             CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650         102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL  148 (435)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (435)
                      -+.. .++... ...++......+-+...+...|+..++||+++-..
T Consensus       500 i~~~-D~y~~~-~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~  544 (977)
T PLN02195        500 IDRS-DRYANR-NVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGY  544 (977)
T ss_pred             CCCC-CCCCcc-cceeeeeeeccccccCCccccccCceeeehhhhcc
Confidence            3211 111111 11112222222223333333444457899988754

>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases

Probab=90.33  E-value=0.38  Score=33.93  Aligned_cols=48  Identities=15%  Similarity=0.106  Sum_probs=31.9

Q ss_pred             cccccceehhhHHHHHHhhccc-cccCc-hhhHHHHHHHHhhcceeEeee
Q psy3650         131 SDLTGSFRLYKKQVLENLVSSC-VSKGY-VFQMEMVIRARQYNYTIGEVP  178 (435)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~d~~l~~r~~~~g~~~~~~~  178 (435)
                      ....+|..+++++.+.++++.. ...+| .+|.|+..|+..+|+++...+
T Consensus        17 ~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~   66 (78)
T PF02709_consen   17 PNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVP   66 (78)
T ss_dssp             TT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SS
T ss_pred             CCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecC
Confidence            4455788899999999996554 45666 579999999999999876644

The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=90.32  E-value=3.4  Score=34.68  Aligned_cols=51  Identities=12%  Similarity=0.264  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650          44 KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT   94 (435)
Q Consensus        44 ~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~   94 (435)
                      ...|...+...|+.....++++++++|. .++++.++.+++.+.+.+.++++
T Consensus        71 ~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  122 (186)
T TIGR02665        71 DFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV  122 (186)
T ss_pred             CCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence            4478889999999988889999999999 78999999999988655666665

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=90.29  E-value=4.3  Score=37.03  Aligned_cols=180  Identities=14%  Similarity=0.105  Sum_probs=93.9

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHh
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLK  282 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~  282 (435)
                      ++|+++. ..+...+..+...    . --+|++|.....  . +.++++....  -.+.+.+...++..|.+.|+..|.+
T Consensus        28 Llpv~gk-PmI~~~l~~l~~a----G-i~~I~ii~~~~~--~-~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~   98 (292)
T PRK15480         28 LLPIYDK-PMIYYPLSTLMLA----G-IRDILIISTPQD--T-PRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEE   98 (292)
T ss_pred             EeEECCE-EHHHHHHHHHHHC----C-CCEEEEEecCCc--h-HHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHH
Confidence            5777876 6677777766542    1 237776654322  1 1223332211  1235556666667899999999998


Q ss_pred             hccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCcccc
Q psy3650         283 YATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDL  358 (435)
Q Consensus       283 ~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  358 (435)
                      .... ++++ +.+|+.+....+..+++...+.+.++.+......+...  +.... +...  ..+.+..-   ...-...
T Consensus        99 ~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p~~--yGvv~-~d~~--g~v~~i~EKP~~p~s~~a  172 (292)
T PRK15480         99 FIGGDDCAL-VLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPER--YGVVE-FDQN--GTAISLEEKPLQPKSNYA  172 (292)
T ss_pred             HhCCCCEEE-EECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcCCccc--CcEEE-ECCC--CcEEEEEECCCCCCCCEE
Confidence            8754 5555 55777665567889988765555555443322222111  11100 0000  00001000   1111234


Q ss_pred             ccceeeecHHHHHHhhhcccCc-ccchhhHHHHHHHHCCCcE
Q psy3650         359 TGSFRLYKKQVLENLVSSCVSK-GYVFQMEMVIRARQYNYTI  399 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~~i  399 (435)
                      ..|..+|+.++++.+....... +-.+-+++.-.+.+.|...
T Consensus       173 ~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~  214 (292)
T PRK15480        173 VTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLS  214 (292)
T ss_pred             EEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeE
Confidence            5677899999988874322221 1122356666677788543

>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit

Probab=90.27  E-value=0.34  Score=50.66  Aligned_cols=51  Identities=20%  Similarity=0.295  Sum_probs=38.1

Q ss_pred             EEEecCCCCCC-----HHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhc
Q psy3650         262 IVLKPRKKKLG-----LGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQ  312 (435)
Q Consensus       262 i~~~~~~~n~g-----~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~  312 (435)
                      ++++.++++.|     |+.|+|.-++.+    ++.||+-+|+|.. -++..+.+.+-.+.+
T Consensus       456 LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD  516 (1044)
T PLN02915        456 LVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD  516 (1044)
T ss_pred             eEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeec
Confidence            44444444444     789999999976    7899999999996 778888877766544

>PLN03180 reversibly glycosylated polypeptide; Provisional

Probab=90.18  E-value=0.35  Score=43.69  Aligned_cols=98  Identities=15%  Similarity=0.326  Sum_probs=57.6

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHH-------------HHHHHHHhCCceEEE
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDA-------------AKQLQSIYGSEKIVL  264 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~-------------~~~~~~~~~~~~i~~  264 (435)
                      ....+.||||+-.+..    +|++-...++    .+++|+|-|+....+...             ..++....    -..
T Consensus         9 ~~~evdIVi~TI~~~~----fL~~~r~~l~----~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~----~~~   76 (346)
T PLN03180          9 LKDELDIVIPTIRNLD----FLEMWRPFFQ----PYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPK----ASC   76 (346)
T ss_pred             CCCcceEEEeccCchh----HHHHHHHhcC----cccEEEEecCCcccceeccCCCceeecCHHHHHhhhccc----ccc
Confidence            4567999999976644    3444433333    556777766433222111             11111111    111


Q ss_pred             ecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCc-------cHHHHHHHHh
Q psy3650         265 KPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK-------FIPEMIKLQQ  311 (435)
Q Consensus       265 ~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~-------~l~~~~~~~~  311 (435)
                      +    ++.-.+.++.|+-.++.+|++.+|+|+....+       .+.+.+..+.
T Consensus        77 I----p~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~  126 (346)
T PLN03180         77 I----SFKDSACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLL  126 (346)
T ss_pred             c----ccCcccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcC
Confidence            1    22345788999999999999999999986666       5565555443

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=89.79  E-value=0.42  Score=50.25  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=65.0

Q ss_pred             eEEEccCCCCC-----CHHHHHHHHHhh----ccCCEEEEEcCCCCC-CCCcHHHHHHHHhcCC----CcEEEEeeeecC
Q psy3650          36 KIVLKPRKKKL-----GLGTAYMHGLKY----ATGNFIIIMDADLSH-HPKFIPEMIKLQQQEN----LDVVTGTRYVGT  101 (435)
Q Consensus        36 ~i~~~~~~~n~-----g~~~a~n~gl~~----a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~~~----~~~v~g~~~~~~  101 (435)
                      .++|+..+.+-     -|++|+|..++.    ..++||+.+|+|... +|.++.+.+=.+.++.    ..+|..++...+
T Consensus       517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~  596 (1079)
T PLN02638        517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDG  596 (1079)
T ss_pred             ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCC
Confidence            45666444443     489999999944    468999999999955 4899999888776543    446777765543


Q ss_pred             CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650         102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL  148 (435)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (435)
                      -+... ++... ..-++.....-+-+...+...|+-.++||+++-..
T Consensus       597 i~k~D-~Ygn~-~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~  641 (1079)
T PLN02638        597 IDRND-RYANR-NTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGY  641 (1079)
T ss_pred             CCCCC-ccccc-ceeeeccccccccccCCccccccCcceeehhhcCc
Confidence            33211 11111 11111222222223333444444457899988654

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=89.77  E-value=2.6  Score=36.95  Aligned_cols=100  Identities=15%  Similarity=0.205  Sum_probs=56.1

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....++.+++.+...    ...-+|+|+-+.....  +.+.++.... .+.  ++..+...+. .....+++....+++
T Consensus        22 ~Gkpli~~~i~~l~~~----~~~~~ivVv~~~~~~~--~~i~~~~~~~-~v~--~v~~~~~~~l-~~~~~~~~~~~~d~v   91 (233)
T cd02518          22 GGKPLLEHLLDRLKRS----KLIDEIVIATSTNEED--DPLEALAKKL-GVK--VFRGSEEDVL-GRYYQAAEEYNADVV   91 (233)
T ss_pred             CCccHHHHHHHHHHhC----CCCCeEEEECCCCccc--HHHHHHHHHc-CCe--EEECCchhHH-HHHHHHHHHcCCCEE
Confidence            4455666767665431    1112666665544311  1222332222 223  3334332222 222334444567999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      +++++|.- ++++.+.++++.+...+.++++
T Consensus        92 li~~~D~P~i~~~~i~~li~~~~~~~~~~~~  122 (233)
T cd02518          92 VRITGDCPLIDPEIIDAVIRLFLKSGADYTS  122 (233)
T ss_pred             EEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            99999995 9999999999988766667665

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=89.46  E-value=4.8  Score=35.82  Aligned_cols=120  Identities=13%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             CCCHHHHHHHHHhhccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHH
Q psy3650         270 KLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQ  348 (435)
Q Consensus       270 n~g~~~a~n~g~~~a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
                      ..|.+.++-.+.+...+ +.++++++|...+.+. ..|++.....+.++...... .... .  .... ....  ..+..
T Consensus       101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~~~tl~~~~-~~~~-~--g~v~-~d~~--g~V~~  172 (253)
T cd02524         101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGKLATVTAVH-PPGR-F--GELD-LDDD--GQVTS  172 (253)
T ss_pred             ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCCCEEEEEec-CCCc-c--cEEE-ECCC--CCEEE
Confidence            34568888888888765 8899999999887665 88888666556555432211 1000 0  0000 0000  00000


Q ss_pred             HhcCC--CccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEe
Q psy3650         349 LLLRP--GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEV  402 (435)
Q Consensus       349 ~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~  402 (435)
                      ..-..  +-....+|..+|++++++.+...    ......++.-++.+.| ++..+
T Consensus       173 ~~ekp~~~~~~i~~Giyi~~~~l~~~l~~~----~~~~~~d~l~~li~~~-~v~~~  223 (253)
T cd02524         173 FTEKPQGDGGWINGGFFVLEPEVFDYIDGD----DTVFEREPLERLAKDG-ELMAY  223 (253)
T ss_pred             EEECCCCCCceEEEEEEEECHHHHHhhccc----cchhhHHHHHHHHhcC-CEEEE
Confidence            00000  11235677899999998777321    2223346777777777 55433

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

Probab=89.35  E-value=1.8  Score=37.11  Aligned_cols=70  Identities=16%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             CeEEEEEeCCC--CcChHHHHHHHHHHhCCceEEEccCCCC--------CCHHHHHHHHHhhcc-------CCEEEEEcC
Q psy3650           7 PYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRKKK--------LGLGTAYMHGLKYAT-------GNFIIIMDA   69 (435)
Q Consensus         7 ~~EiivvDd~S--~d~t~~i~~~~~~~~~~~~i~~~~~~~n--------~g~~~a~n~gl~~a~-------gd~i~~lD~   69 (435)
                      |.-.|||+|+.  ++.|.+++++.     .+...++....+        +| ...+|.|+++.+       ..+|.|.|+
T Consensus        31 ~l~WIVVEd~~~~t~~va~lL~~s-----gl~y~HL~~~~~~~~~~~~~rg-~~qRn~AL~~ir~~~~~~~~GVVyFADD  104 (223)
T cd00218          31 PLHWIVVEDSEEKTPLVAELLRRS-----GLMYTHLNAKTPSDPTWLKPRG-VEQRNLALRWIREHLSAKLDGVVYFADD  104 (223)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHc-----CCceEEeccCCCCCcccCCccc-HHHHHHHHHHHHhccccCcceEEEEccC
Confidence            68899999987  23344555543     233444322222        23 466999998875       268999999


Q ss_pred             CCCCCCCcHHHHH
Q psy3650          70 DLSHHPKFIPEMI   82 (435)
Q Consensus        70 D~~~~~~~l~~~~   82 (435)
                      |..++-+.+++|-
T Consensus       105 dN~Ysl~lF~emR  117 (223)
T cd00218         105 DNTYDLELFEEMR  117 (223)
T ss_pred             CCcccHHHHHHHh
Confidence            9999988777743

Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=89.22  E-value=2.5  Score=35.50  Aligned_cols=100  Identities=17%  Similarity=0.145  Sum_probs=60.2

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC-CCCCHHHHHHHHHh-hccCC
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK-KKLGLGTAYMHGLK-YATGN  287 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~-~n~g~~~a~n~g~~-~a~~d  287 (435)
                      +....+...++.+.+.    . .-+|+||-+...+   +..+.+....   .+.++..+ ...|...++..|++ ....+
T Consensus        23 ~g~pll~~~i~~l~~~----~-~~~iivv~~~~~~---~~~~~~~~~~---~v~~v~~~~~~~g~~~si~~~l~~~~~~~   91 (188)
T TIGR03310        23 KGKTILEHVVDNALRL----F-FDEVILVLGHEAD---ELVALLANHS---NITLVHNPQYAEGQSSSIKLGLELPVQSD   91 (188)
T ss_pred             CCeeHHHHHHHHHHHc----C-CCcEEEEeCCcHH---HHHHHhccCC---CeEEEECcChhcCHHHHHHHHhcCCCCCC
Confidence            3455666666655431    1 2266666443222   2233332211   23333332 23577888888988 45679


Q ss_pred             EEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEe
Q psy3650         288 FIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       288 ~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      +++++++|.- ++++.+..+++.+...+.++++.
T Consensus        92 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~  125 (188)
T TIGR03310        92 GYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP  125 (188)
T ss_pred             EEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence            9999999995 88999999999876555555544

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=89.20  E-value=0.37  Score=41.40  Aligned_cols=74  Identities=20%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhC-CceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYG-SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ   85 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~-~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~   85 (435)
                      -|++||-+|-   -.+.++++-.++| ...+++-+..+..+-+.++-.|...++++ ++++++|..++|..++.++++-
T Consensus        47 ~e~vvV~~g~---~~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii~~sD~vye~~~~e~l~~a~  121 (239)
T COG1213          47 TEFVVVTNGY---RADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FILVMSDHVYEPSILERLLEAP  121 (239)
T ss_pred             ceEEEEeccc---hHHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence            6888886654   3466777777777 45555544434444467788889999988 8889999999999999999854

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=89.15  E-value=3.5  Score=36.01  Aligned_cols=86  Identities=12%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII  291 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~  291 (435)
                      ...+...++++.+.    . --+|+||-....    +.++++....+++.++..+.....|.+.++..++... .+.+++
T Consensus        29 ~~li~~~l~~l~~~----g-i~~i~vv~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~-~~~~lv   98 (229)
T cd02523          29 KPLLERQIETLKEA----G-IDDIVIVTGYKK----EQIEELLKKYPNIKFVYNPDYAETNNIYSLYLARDFL-DEDFLL   98 (229)
T ss_pred             EEHHHHHHHHHHHC----C-CceEEEEeccCH----HHHHHHHhccCCeEEEeCcchhhhCcHHHHHHHHHHc-CCCEEE
Confidence            46667777666542    1 226766654322    2233333222333444332223568888899998887 678899


Q ss_pred             EeCCCCCCCccHHHHH
Q psy3650         292 MDADLSHHPKFIPEMI  307 (435)
Q Consensus       292 ~d~D~~~~~~~l~~~~  307 (435)
                      +++|..+.++.+..+.
T Consensus        99 ~~~D~~~~~~~~~~~~  114 (229)
T cd02523          99 LEGDVVFDPSILERLL  114 (229)
T ss_pred             EeCCEecCHHHHHHHH
Confidence            9999988776555444

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=89.13  E-value=1.8  Score=37.80  Aligned_cols=56  Identities=16%  Similarity=0.285  Sum_probs=43.2

Q ss_pred             ccCCCCCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650          40 KPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG   95 (435)
Q Consensus        40 ~~~~~n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g   95 (435)
                      +..+...|.+.++..|+....  .+.++++++|. .+++..+..+++...+.++++++.
T Consensus        67 ~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~  125 (229)
T cd02540          67 VLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVL  125 (229)
T ss_pred             EECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEE
Confidence            334555788999998998765  58999999998 568889999998886666666543

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=89.03  E-value=2.2  Score=35.68  Aligned_cols=51  Identities=16%  Similarity=0.357  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650          44 KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG   95 (435)
Q Consensus        44 ~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g   95 (435)
                      ...|...++..|++....++++++.+|. .++++.+..+++.+ +++.++++.
T Consensus        67 ~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~  118 (181)
T cd02503          67 PGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADAVVP  118 (181)
T ss_pred             CCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence            4568889999999998889999999999 57999999999987 555555553

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=88.76  E-value=7.4  Score=34.24  Aligned_cols=174  Identities=12%  Similarity=0.059  Sum_probs=87.7

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHhhccCCE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNF  288 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~  288 (435)
                      ....+..+++.+.+.    . --+|++|.....   .+.+.++...  ...+.+.....+...|.+.++..+......+-
T Consensus        30 ~~pli~~~l~~l~~~----g-i~~i~vv~~~~~---~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~  101 (240)
T cd02538          30 DKPMIYYPLSTLMLA----G-IREILIISTPED---LPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDP  101 (240)
T ss_pred             CEEhHHHHHHHHHHC----C-CCEEEEEeCcch---HHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcCCCC
Confidence            455677777666541    1 226777654322   1122222211  11334555445556788999999988876666


Q ss_pred             EEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC---CCccccccceeee
Q psy3650         289 IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR---PGVSDLTGSFRLY  365 (435)
Q Consensus       289 v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  365 (435)
                      ++++.+|..+.+..+.++++...+.+.++........+...  +.... ....  +.+....-.   .......+|+.+|
T Consensus       102 ~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~v~-~d~~--g~v~~~~ekp~~~~~~~~~~Giyi~  176 (240)
T cd02538         102 VCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPER--YGVVE-FDEN--GRVLSIEEKPKKPKSNYAVTGLYFY  176 (240)
T ss_pred             EEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhc--CceEE-ecCC--CcEEEEEECCCCCCCCeEEEEEEEE
Confidence            67778998766667888888765545554433222221110  10000 0000  000000000   1112345678899


Q ss_pred             cHHHHHHhhhcccCc-ccchhhHHHHHHHHCCC
Q psy3650         366 KKQVLENLVSSCVSK-GYVFQMEMVIRARQYNY  397 (435)
Q Consensus       366 ~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~  397 (435)
                      ++++++.+....... +..+-.++.-++.+.|.
T Consensus       177 ~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~  209 (240)
T cd02538         177 DNDVFEIAKQLKPSARGELEITDVNNEYLEKGK  209 (240)
T ss_pred             CHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCC
Confidence            999987663211111 11222467777777773

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>KOG3588|consensus

Probab=88.70  E-value=3.3  Score=38.00  Aligned_cols=167  Identities=13%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             CCCeEEEEEeCCC-CcC--hHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCC-EEEEEcCCCCCCCCcHHH
Q psy3650           5 NYPYEIIVIDDGS-PDG--TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN-FIIIMDADLSHHPKFIPE   80 (435)
Q Consensus         5 ~~~~EiivvDd~S-~d~--t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd-~i~~lD~D~~~~~~~l~~   80 (435)
                      +-..+++||==|+ .|+  ..+.+..+.+.+++  +..+...+..+.+.|+-.|.+.-..+ .++|.|-|..+..++|.+
T Consensus       256 d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~--~q~l~lngeFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~r  333 (494)
T KOG3588|consen  256 DDRLALSVVYFGYSEDEMAKRETITSLRASFIP--VQFLGLNGEFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNR  333 (494)
T ss_pred             CCceEEEEEEecCCChHHHhhhHHHHHhhcCCc--eEEecccchhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHH
Confidence            3445666665444 333  22455577776654  45445555567888889998888655 566778899999999988


Q ss_pred             HHHHHhcCCCcE---EEEeeeecCCCccCcccchhhhhchHHHHH-HHHhCCCcccccccee-hhhHHHHHHhhcccccc
Q psy3650          81 MIKLQQQENLDV---VTGTRYVGTGGVYGWDFKRKLVSRGANYLT-QLLLRPGVSDLTGSFR-LYKKQVLENLVSSCVSK  155 (435)
Q Consensus        81 ~~~~~~~~~~~~---v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  155 (435)
                      +-... ..+..+   |+.+.+...- +   .-..+..+ ....+. ....+. ..+..-|.. .++.+++.--|.+....
T Consensus       334 cr~Nt-~~gkqiyfPivFS~ynp~i-v---y~~~~~~p-~e~~~~~~~~tGf-wRdfGfGmtc~yrsd~~~vgGFD~~I~  406 (494)
T KOG3588|consen  334 CRLNT-ILGKQIYFPIVFSQYNPEI-V---YEQDKPLP-AEQQLVIKKDTGF-WRDFGFGMTCQYRSDFLTVGGFDMEIK  406 (494)
T ss_pred             Hhhcc-CCCceEEEEEEEeecCcce-e---ecCCCCCc-hhHheeecccccc-ccccCCceeEEeeccceeecCcceeee
Confidence            86544 233222   2222211100 0   00001111 111100 000111 122223333 34555543335555678


Q ss_pred             Cc-hhhHHHHHHHHhhcceeEeeeeE
Q psy3650         156 GY-VFQMEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       156 ~~-~~d~~l~~r~~~~g~~~~~~~~~  180 (435)
                      +| .+|.+++.+..+.|.++...|..
T Consensus       407 GWG~EDV~Ly~K~v~~~l~viR~p~p  432 (494)
T KOG3588|consen  407 GWGGEDVDLYRKYVHSGLKVIRTPEP  432 (494)
T ss_pred             ccCcchHHHHHHHHhcCcEEEecCCC
Confidence            88 46899999999999988776654

>PLN03153 hypothetical protein; Provisional

Probab=88.70  E-value=4  Score=39.63  Aligned_cols=123  Identities=10%  Similarity=0.066  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehh
Q psy3650          61 GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLY  140 (435)
Q Consensus        61 gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (435)
                      .+|++++|+|+.+.++.|..+++.. ++.....+|........+                   ..++.. ...+|+-.++
T Consensus       211 ~kWfVf~DDDTyf~~~NLv~~Ls~Y-Dptkp~YIGs~Se~~~qn-------------------~~f~~~-fA~GGAG~~L  269 (537)
T PLN03153        211 VRWFVLGDDDTIFNADNLVAVLSKY-DPSEMVYVGGPSESHSAN-------------------SYFSHN-MAFGGGGIAI  269 (537)
T ss_pred             CCEEEEecCCccccHHHHHHHHhhc-CCCCCEEecccccccccc-------------------cccccc-cccCCceEEE
Confidence            5999999999998776666666666 344455556543221110                   000111 2233445688


Q ss_pred             hHHHHHHhhc---ccc---ccCchhhHHHHHHHHhhcceeEeeeeEeeecccceeeeeecCCCCCcceEE
Q psy3650         141 KKQVLENLVS---SCV---SKGYVFQMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTV  204 (435)
Q Consensus       141 ~~~~~~~~~~---~~~---~~~~~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~isi  204 (435)
                      ++.+++.+..   .+.   ...+..|..+..=....|.++...+-.+.....+.........+..|.+|+
T Consensus       270 SrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~~Gd~~G~les~p~~P~vSl  339 (537)
T PLN03153        270 SYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDIRGNAHGLLSSHPIAPFVSI  339 (537)
T ss_pred             cHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCccccccCCCcchHhhcCCCCCceee
Confidence            9877666522   121   123566776555444567776666555555554444444443333455665

>PLN02400 cellulose synthase

Probab=88.54  E-value=0.58  Score=49.27  Aligned_cols=53  Identities=19%  Similarity=0.329  Sum_probs=40.9

Q ss_pred             eEEEecCCCCCC-----HHHHHHHHHhh----ccCCEEEEEeCCCC-CCCccHHHHHHHHhcC
Q psy3650         261 KIVLKPRKKKLG-----LGTAYMHGLKY----ATGNFIIIMDADLS-HHPKFIPEMIKLQQQE  313 (435)
Q Consensus       261 ~i~~~~~~~n~g-----~~~a~n~g~~~----a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~  313 (435)
                      .++++.++++.|     |+.|+|.-++-    +++.||+-+|+|.. -++..+.+.+-.+.++
T Consensus       524 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~  586 (1085)
T PLN02400        524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP  586 (1085)
T ss_pred             eeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheecc
Confidence            355555555555     78999999995    47899999999997 5888888888777543

>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=88.44  E-value=2  Score=36.53  Aligned_cols=163  Identities=12%  Similarity=0.068  Sum_probs=82.9

Q ss_pred             CCeEEEEEeCCCC--cCh-HHHHHHHHHHhCCceEEEccCCCCC-C----HHHHHHHHHhhcc-CCEEEEEcCCCCCCCC
Q psy3650           6 YPYEIIVIDDGSP--DGT-LDAAKQLQSIYGSEKIVLKPRKKKL-G----LGTAYMHGLKYAT-GNFIIIMDADLSHHPK   76 (435)
Q Consensus         6 ~~~EiivvDd~S~--d~t-~~i~~~~~~~~~~~~i~~~~~~~n~-g----~~~a~n~gl~~a~-gd~i~~lD~D~~~~~~   76 (435)
                      ....++.|-..+.  +.. .+.+.+=.+++.+  |+.....+++ .    .-.+++.+.+.+. .+|++.+|+|..+.+.
T Consensus        19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~D--il~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~   96 (195)
T PF01762_consen   19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYGD--ILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD   96 (195)
T ss_pred             CcEEEEEEEecCCCCcHHHHHHhhhhhhhcCc--eEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence            4466666665555  322 2223221233444  4444343332 2    2355666666666 6999999999999998


Q ss_pred             cHHHHHHHH-hcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcc--cc
Q psy3650          77 FIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS--CV  153 (435)
Q Consensus        77 ~l~~~~~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  153 (435)
                      .|...+... .......++|............ ..+...+.......    ..+ .-..|++.++++++++.+...  ..
T Consensus        97 ~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~-~~kw~v~~~~y~~~----~yP-~y~~G~~yvls~~~v~~i~~~~~~~  170 (195)
T PF01762_consen   97 RLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDP-SSKWYVSEEEYPDD----YYP-PYCSGGGYVLSSDVVKRIYKASSHT  170 (195)
T ss_pred             HhhhhhhhcccCccccccccccccCCcccccc-ccCceeeeeecccc----cCC-CcCCCCeEEecHHHHHHHHHHhhcC
Confidence            888888766 2233445555443332211110 11111111000000    011 112356778999999887332  12


Q ss_pred             ccCchhhHHHHHHHHhhcceeEe
Q psy3650         154 SKGYVFQMEMVIRARQYNYTIGE  176 (435)
Q Consensus       154 ~~~~~~d~~l~~r~~~~g~~~~~  176 (435)
                      ..-..+|.-+++-+.+.|.+...
T Consensus       171 ~~~~~eDv~iGi~~~~~~i~~~~  193 (195)
T PF01762_consen  171 PFFPLEDVFIGILAEKLGIKPIH  193 (195)
T ss_pred             CCCCchHHHHHHHHHHCCCCccC
Confidence            22334566666666677776543

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=88.41  E-value=11  Score=32.38  Aligned_cols=104  Identities=14%  Similarity=0.150  Sum_probs=61.8

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-----CCceEEEecCCCCCCHHHHHHH
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-----GSEKIVLKPRKKKLGLGTAYMH  279 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-----~~~~i~~~~~~~n~g~~~a~n~  279 (435)
                      .+|.-|. ..+..+++.+.+.     .--+|++|-...   ..+.+++.....     ....+.........|.+.++..
T Consensus        25 Llpv~g~-pli~~~l~~l~~~-----g~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~   95 (214)
T cd04198          25 LLPVANK-PMIWYPLDWLEKA-----GFEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRH   95 (214)
T ss_pred             cCEECCe-eHHHHHHHHHHHC-----CCCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHH
Confidence            3455453 6677777766541     123777775421   122233333322     1223445555667899999999


Q ss_pred             HHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEE
Q psy3650         280 GLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       280 g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      +.+...++ ++++.+|...+ ..+..+++.....+..+.+
T Consensus        96 ~~~~i~~d-~lv~~~D~i~~-~~l~~~l~~h~~~~~~~t~  133 (214)
T cd04198          96 IRKKIKKD-FLVLSCDLITD-LPLIELVDLHRSHDASLTV  133 (214)
T ss_pred             HHhhcCCC-EEEEeCccccc-cCHHHHHHHHhccCCcEEE
Confidence            99887555 77889996544 5578888877665555444

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=88.35  E-value=5.8  Score=34.61  Aligned_cols=102  Identities=12%  Similarity=0.158  Sum_probs=57.3

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHH-HHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAK-QLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA  284 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a  284 (435)
                      +|..+. ..+..+++.+.+.    . .-++++|-. ........+. .+....+++.+...+ +...|.+.++..|....
T Consensus        24 l~i~g~-pli~~~l~~l~~~----g-~~~ivvv~~-~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~g~~~~l~~a~~~l   95 (231)
T cd04183          24 IEVDGK-PMIEWVIESLAKI----F-DSRFIFICR-DEHNTKFHLDESLKLLAPNATVVELD-GETLGAACTVLLAADLI   95 (231)
T ss_pred             eEECCE-EHHHHHHHhhhcc----C-CceEEEEEC-hHHhhhhhHHHHHHHhCCCCEEEEeC-CCCCcHHHHHHHHHhhc
Confidence            455443 5677777666441    1 225555543 2222222222 232223445555443 45778899999998876


Q ss_pred             c-CCEEEEEeCCCCCCCccHHHHHHHHhcCCCc
Q psy3650         285 T-GNFIIIMDADLSHHPKFIPEMIKLQQQENLD  316 (435)
Q Consensus       285 ~-~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~  316 (435)
                      . .+.++++++|.....+.. .++....+.+.+
T Consensus        96 ~~~~~~lv~~~D~i~~~~~~-~~~~~~~~~~~~  127 (231)
T cd04183          96 DNDDPLLIFNCDQIVESDLL-AFLAAFRERDLD  127 (231)
T ss_pred             CCCCCEEEEecceeeccCHH-HHHHHhhccCCc
Confidence            4 477888999998877644 555544333333

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=88.33  E-value=13  Score=32.35  Aligned_cols=99  Identities=14%  Similarity=0.024  Sum_probs=61.7

Q ss_pred             CCCHHHHHHHHHhhc----cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHH-H--H
Q psy3650         270 KLGLGTAYMHGLKYA----TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV-S--R  341 (435)
Q Consensus       270 n~g~~~a~n~g~~~a----~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~--~  341 (435)
                      ..|...++..|++..    ..|.++++++|.- ..++.+.++++.+.+.++|.+.+.......     +.+.... .  .
T Consensus        75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~-----~~~~~~~~~~g~  149 (222)
T TIGR03584        75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFP-----IQRAFKLKENGG  149 (222)
T ss_pred             CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCC-----hHHheEECCCCc
Confidence            446678888888764    2699999999995 899999999999987668877775432210     0000000 0  0


Q ss_pred             HH-----HHHHHHhcCCCccccccceeeecHHHHHHh
Q psy3650         342 GA-----NYLTQLLLRPGVSDLTGSFRLYKKQVLENL  373 (435)
Q Consensus       342 ~~-----~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  373 (435)
                      ..     ....+..--.+.....|++.+++++.+.+-
T Consensus       150 ~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~  186 (222)
T TIGR03584       150 VEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLES  186 (222)
T ss_pred             EEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhc
Confidence            00     000011111234567899999999998764

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ]

Probab=88.19  E-value=1.7  Score=40.46  Aligned_cols=154  Identities=12%  Similarity=0.017  Sum_probs=91.3

Q ss_pred             CceEEEccCCCCCCHHHHHHHHHhhccC-CEEEEEcCCCCCCCCcHHHHHHHHhcC-CCcEEEEe-e--eec--CCCccC
Q psy3650          34 SEKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQE-NLDVVTGT-R--YVG--TGGVYG  106 (435)
Q Consensus        34 ~~~i~~~~~~~n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~-~~~~v~g~-~--~~~--~~~~~~  106 (435)
                      .++++.+...+..|...|++.+-.+-+| +|++.+|+...+.++|=+.+++.++.- +.-.|... .  +..  ......
T Consensus        89 ~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~~~~~~~~~~  168 (343)
T PF11397_consen   89 QIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYEPDGGQPEPE  168 (343)
T ss_pred             eEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcccccCCcccc
Confidence            4566666777888999999999998886 899999999999999999999988763 22223221 1  111  000000


Q ss_pred             cccchhh-----hhchHHHHHHHH--------hCCCccccccceehhhHHHHHHhhccccc--cCchhhHHHHHHHHhhc
Q psy3650         107 WDFKRKL-----VSRGANYLTQLL--------LRPGVSDLTGSFRLYKKQVLENLVSSCVS--KGYVFQMEMVIRARQYN  171 (435)
Q Consensus       107 ~~~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~l~~r~~~~g  171 (435)
                      ......+     ............        .........+||..-+-+++..+..+...  .-.++++-+..|+.-.|
T Consensus       169 ~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eVP~DP~lp~lF~GEE~~~aaRlwT~G  248 (343)
T PF11397_consen  169 KTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREVPYDPHLPFLFDGEEISMAARLWTHG  248 (343)
T ss_pred             CCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecCCCCCCcccccccHHHHHHHHHHHcC
Confidence            0000000     000000000000        01112333566766677777777555444  44466788889999999


Q ss_pred             ceeEeeeeEeeecccc
Q psy3650         172 YTIGEVPISFVDRVVF  187 (435)
Q Consensus       172 ~~~~~~~~~~~~r~~~  187 (435)
                      |.+..-+.....+.+.
T Consensus       249 YD~Y~P~~~v~~H~Y~  264 (343)
T PF11397_consen  249 YDFYSPTRNVLFHLYS  264 (343)
T ss_pred             CccccCCCceeEEEcc
Confidence            9986655555555543

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=88.17  E-value=3.4  Score=34.95  Aligned_cols=50  Identities=18%  Similarity=0.315  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650          45 KLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT   94 (435)
Q Consensus        45 n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~   94 (435)
                      ..|...+...|++....++++++++|. .++++.+..+++.+.+.+..++.
T Consensus        73 ~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  123 (193)
T PRK00317         73 FPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW  123 (193)
T ss_pred             CCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence            367778889999988889999999999 77999999999987555544443

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=88.13  E-value=5.2  Score=35.68  Aligned_cols=58  Identities=17%  Similarity=0.246  Sum_probs=41.9

Q ss_pred             eEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCc--cHHHHHHHHhcCCCceE
Q psy3650         261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK--FIPEMIKLQQQENLDVV  318 (435)
Q Consensus       261 ~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~--~l~~~~~~~~~~~~~~v  318 (435)
                      .+.........|.+.++..+......+-++++.+|..+...  .+.++++...+.+.+++
T Consensus        94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii  153 (260)
T TIGR01099        94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSII  153 (260)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEE
Confidence            44444445567899999999887755667888888876544  79999998776666653

Built to distinquish between the highly similar genes galU and galF

>PRK10122 GalU regulator GalF; Provisional

Probab=88.10  E-value=11  Score=34.47  Aligned_cols=60  Identities=17%  Similarity=0.238  Sum_probs=42.3

Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhhcc-CCEEEEEeCCCCCCCc-------cHHHHHHHHhcCCCceEE
Q psy3650         259 SEKIVLKPRKKKLGLGTAYMHGLKYAT-GNFIIIMDADLSHHPK-------FIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       259 ~~~i~~~~~~~n~g~~~a~n~g~~~a~-~d~v~~~d~D~~~~~~-------~l~~~~~~~~~~~~~~v~  319 (435)
                      ..++..+.+++..|.+.|+..+..... .+++++. +|..++++       .+..+++...+.+.+++.
T Consensus        96 ~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~  163 (297)
T PRK10122         96 GVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGRSQVL  163 (297)
T ss_pred             CceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCCcEEE
Confidence            445666667778899999999999874 4666555 88877543       588888876655555443

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=87.97  E-value=6.8  Score=33.80  Aligned_cols=170  Identities=9%  Similarity=0.073  Sum_probs=87.2

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-cCCE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-TGNF  288 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a-~~d~  288 (435)
                      +....+..+++.+.+    ....-+|+|+-+...   .+.+.+......  .+.++...  .+...++..|+... ..|+
T Consensus        25 ~gkpll~~~l~~l~~----~~~~~~ivVv~~~~~---~~~~~~~~~~~~--~~~~~~~~--~~~~~sl~~~l~~~~~~d~   93 (217)
T TIGR00453        25 GGRPLLEHTLDAFLA----HPAIDEVVVVVSPED---QEFFQKYLVARA--VPKIVAGG--DTRQDSVRNGLKALKDAEW   93 (217)
T ss_pred             CCeEHHHHHHHHHhc----CCCCCEEEEEEChHH---HHHHHHHhhcCC--cEEEeCCC--chHHHHHHHHHHhCCCCCE
Confidence            455566666666543    111236777654321   122222211111  23333221  23567888888877 6799


Q ss_pred             EEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCcee--ccchhHHHHHHHHHHHHHHhcCCCccccccceeee
Q psy3650         289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY--GWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLY  365 (435)
Q Consensus       289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (435)
                      ++++++|.- ++++.+..+++.+.+.+..+++.+.  .++-..  ..........           +..+...++. .+|
T Consensus        94 vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~--~~~v~~~~~~g~~~~~~~-----------r~~~~~~~~p-~~f  159 (217)
T TIGR00453        94 VLVHDAARPFVPKELLDRLLEALRKAGAAILALPV--ADTLKRVEADGFIVETVD-----------REGLWAAQTP-QAF  159 (217)
T ss_pred             EEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEec--cceEEEEcCCCceeecCC-----------hHHeEEEeCC-Ccc
Confidence            999999995 9999999999988653322222111  111000  0000000011           1123334443 579


Q ss_pred             cHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         366 KKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       366 ~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      +++.++++.......++. -+|..-.+...|.++..++..
T Consensus       160 ~~~~l~~~~~~~~~~~~~-~~d~~~~~~~~g~~i~~~~~~  198 (217)
T TIGR00453       160 RTELLKKALARAKEEGFE-ITDDASAVEKLGGKVALVEGD  198 (217)
T ss_pred             cHHHHHHHHHHHHhcCCC-CCcHHHHHHHcCCCeEEEecC
Confidence            999998874321112222 234444456779999887653

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=87.89  E-value=7.2  Score=34.57  Aligned_cols=142  Identities=13%  Similarity=0.085  Sum_probs=77.9

Q ss_pred             CceEEEccCCCCCCHHHHHHHHHhhccC-CEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchh
Q psy3650          34 SEKIVLKPRKKKLGLGTAYMHGLKYATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK  112 (435)
Q Consensus        34 ~~~i~~~~~~~n~g~~~a~n~gl~~a~g-d~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~  112 (435)
                      .+.+.+..+++..|.+.|.-.|-.+... ++++.+ +|.++.- -+..+++.+.+.+.+..+.......+...+=.-...
T Consensus        72 gv~itY~~Q~~p~GlA~Av~~a~~fv~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~  149 (286)
T COG1209          72 GVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDE  149 (286)
T ss_pred             CcceEEEecCCCCcHHHHHHHHHhhcCCCceEEEe-cCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcC
Confidence            3567777788889999999999999985 555555 5555555 889999888775555544433333222111000000


Q ss_pred             hhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhcceeEeeee
Q psy3650         113 LVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g~~~~~~~~  179 (435)
                      -. +......+.. .+...-...|+-+|+.++++.+..-....+...+ .+..-..+..|..+.....
T Consensus       150 ~~-~v~~l~EKP~-~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~  215 (286)
T COG1209         150 DG-KVIGLEEKPK-EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILI  215 (286)
T ss_pred             CC-cEEEeEECCC-CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEc
Confidence            00 1111111111 1112222356778999999988433333333333 3444455678887655443

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=87.62  E-value=14  Score=32.44  Aligned_cols=37  Identities=11%  Similarity=0.089  Sum_probs=29.7

Q ss_pred             cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650          60 TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT   96 (435)
Q Consensus        60 ~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~   96 (435)
                      ..|+|+.+|+|. .++|+.+..+++.+.+.++++++..
T Consensus        87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~  124 (238)
T TIGR00466        87 DDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALA  124 (238)
T ss_pred             CCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEe
Confidence            468999999999 5899999999999865556665543

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=87.40  E-value=4  Score=39.88  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=64.4

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA  284 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a  284 (435)
                      ++|..+. ..+..+++.+.+..      -+|+++-+...    +.++++...  .  +.++..+...|.+.++..++.+.
T Consensus        22 l~~v~gk-pli~~~l~~l~~~~------~~i~vv~~~~~----~~i~~~~~~--~--~~~~~~~~~~g~~~ai~~a~~~l   86 (448)
T PRK14357         22 LHKISGK-PMINWVIDTAKKVA------QKVGVVLGHEA----ELVKKLLPE--W--VKIFLQEEQLGTAHAVMCARDFI   86 (448)
T ss_pred             eeEECCe-eHHHHHHHHHHhcC------CcEEEEeCCCH----HHHHHhccc--c--cEEEecCCCCChHHHHHHHHHhc
Confidence            4555543 66777777665521      25666643221    233333221  2  22333455668889999998876


Q ss_pred             c-CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEee
Q psy3650         285 T-GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT  321 (435)
Q Consensus       285 ~-~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~  321 (435)
                      . .+.++++++|. .+....+.++++.+++.+.++.+..
T Consensus        87 ~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~  125 (448)
T PRK14357         87 EPGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILV  125 (448)
T ss_pred             CcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEE
Confidence            4 58999999998 4778889999998866666665543

>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2

Probab=87.13  E-value=6.5  Score=32.02  Aligned_cols=52  Identities=12%  Similarity=0.028  Sum_probs=40.2

Q ss_pred             CceEEEecCCCCCCHHHHHHHHHhh----ccCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650         259 SEKIVLKPRKKKLGLGTAYMHGLKY----ATGNFIIIMDADLSHHPKFIPEMIKLQ  310 (435)
Q Consensus       259 ~~~i~~~~~~~n~g~~~a~n~g~~~----a~~d~v~~~d~D~~~~~~~l~~~~~~~  310 (435)
                      .+.+.+.--++|.||-..+..-+..    -+-+|++++|+.+.+.++.|-.+.+++
T Consensus       108 PvQ~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf  163 (163)
T PF01644_consen  108 PVQIIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF  163 (163)
T ss_pred             CEEEEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence            3455555567788888777776664    367999999999999999999888653

4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=87.02  E-value=5.4  Score=34.55  Aligned_cols=61  Identities=13%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             CceEEEccCC-CCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh--cCCCcEEEE
Q psy3650          34 SEKIVLKPRK-KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ--QENLDVVTG   95 (435)
Q Consensus        34 ~~~i~~~~~~-~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~--~~~~~~v~g   95 (435)
                      ...+.+.... +..|.++++..|+.....+.++++.+|...+.+... +++...  +.+..+++.
T Consensus        69 ~~~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~~~~~~~~~~~~~  132 (221)
T cd06422          69 GLRITISDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAP-LLLLHAWRMDALLLLLP  132 (221)
T ss_pred             CceEEEecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHHHhccCCCceEEE
Confidence            3456555444 456888999999988766889999999988776554 454443  344444443

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=87.00  E-value=10  Score=33.80  Aligned_cols=121  Identities=12%  Similarity=0.118  Sum_probs=66.0

Q ss_pred             CCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHH
Q psy3650         269 KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQ  348 (435)
Q Consensus       269 ~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (435)
                      +..|.+.++..+.+....+.++++++|...+ ..+..+++...+.+.++.+...  .+....+  ...  ...  +.+..
T Consensus       101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~~~~d~tl~~~--~~~~~yG--~v~--~d~--~~V~~  171 (254)
T TIGR02623       101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRKHGKKATVTAV--QPPGRFG--ALD--LEG--EQVTS  171 (254)
T ss_pred             CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHHcCCCEEEEEe--cCCCccc--EEE--ECC--CeEEE
Confidence            3467788888888877666777999998764 4578888876666666544321  1111000  000  000  00100


Q ss_pred             HhcC--CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEee
Q psy3650         349 LLLR--PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       349 ~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      ..-.  ..-..+..|..+|++++|+.+..    ....+..|+.-.+...| ++...+
T Consensus       172 ~~Ekp~~~~~~i~~Giyi~~~~il~~l~~----~~~~~~~d~i~~l~~~~-~v~~~~  223 (254)
T TIGR02623       172 FQEKPLGDGGWINGGFFVLNPSVLDLIDG----DATVWEQEPLETLAQRG-ELSAYE  223 (254)
T ss_pred             EEeCCCCCCCeEEEEEEEEcHHHHhhccc----cCchhhhhHHHHHHhCC-CEEEEe
Confidence            0001  01123456788999999966622    11123456777777777 444333

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []

Probab=86.95  E-value=0.83  Score=40.62  Aligned_cols=109  Identities=8%  Similarity=0.034  Sum_probs=51.9

Q ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceeh
Q psy3650          60 TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL  139 (435)
Q Consensus        60 ~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (435)
                      ..+|++++|+|+.+.++.|..++..+ ++..++.+|.+.......    ...+..     .......+.... .+|+-.+
T Consensus        86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~-~~~~~~yiG~~~~~~~~~----~~~~~~-----~~~~~~~~~~f~-~GGaG~v  154 (252)
T PF02434_consen   86 DKDWFCFADDDTYVNVENLRRLLSKY-DPSEPIYIGRPSGDRPIE----IIHRFN-----PNKSKDSGFWFA-TGGAGYV  154 (252)
T ss_dssp             T-SEEEEEETTEEE-HHHHHHHHTTS--TTS--EEE-EE-------------------------------EE--GGG-EE
T ss_pred             CceEEEEEeCCceecHHHHHHHHhhC-CCccCEEeeeeccCccce----eecccc-----ccccCcCceEee-CCCeeHH
Confidence            35999999999999988888888877 455677777765432210    000000     000001111222 2344578


Q ss_pred             hhHHHHHHhhc-----cccc----cCchhhHHHHHHHHh-hcceeEeeee
Q psy3650         140 YKKQVLENLVS-----SCVS----KGYVFQMEMVIRARQ-YNYTIGEVPI  179 (435)
Q Consensus       140 ~~~~~~~~~~~-----~~~~----~~~~~d~~l~~r~~~-~g~~~~~~~~  179 (435)
                      ++|.+++++..     .+..    ....+|+.+..-+.. .|.++...+.
T Consensus       155 lSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~  204 (252)
T PF02434_consen  155 LSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPL  204 (252)
T ss_dssp             EEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT
T ss_pred             HhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechh
Confidence            99999998822     1111    134568888776655 7877666553

It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=86.46  E-value=8.6  Score=32.71  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650          44 KKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT   96 (435)
Q Consensus        44 ~n~g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~   96 (435)
                      ...|.++++..|.....   .+.++++.+|. +.+..+..+++...+.+.++++..
T Consensus        91 ~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~-v~~~~~~~~l~~~~~~~~~~t~~~  145 (200)
T cd02508          91 WYRGTADAIYQNLDYIERSDPEYVLILSGDH-IYNMDYREMLDFHIESGADITVVY  145 (200)
T ss_pred             cccCcHHHHHHHHHHHHhCCCCEEEEecCCE-EEecCHHHHHHHHHHcCCCEEEEE
Confidence            45788999988888764   47888999998 556678888887766666665544

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>PLN02241 glucose-1-phosphate adenylyltransferase

Probab=86.38  E-value=2.4  Score=41.20  Aligned_cols=134  Identities=13%  Similarity=0.131  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHHHhhcc------CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhH-------
Q psy3650         270 KLGLGTAYMHGLKYAT------GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR-------  336 (435)
Q Consensus       270 n~g~~~a~n~g~~~a~------~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------  336 (435)
                      ..|.+.|+..++....      .+.++++++|.... ..+.++++..++.+.++.+............+....       
T Consensus       100 ~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~-~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~~~v  178 (436)
T PLN02241        100 FQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYR-MDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI  178 (436)
T ss_pred             ccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEc-cCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCCCCE
Confidence            3677888877765532      47789999999765 458888887766667655443322110000000000       


Q ss_pred             -HHHHHHH-HHHHHH-----hc-------CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEe
Q psy3650         337 -KLVSRGA-NYLTQL-----LL-------RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEV  402 (435)
Q Consensus       337 -~~~~~~~-~~~~~~-----~~-------~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~  402 (435)
                       .+..+-. ......     .+       ........+|..+|+++++..+..........+-.|++-++...|.++...
T Consensus       179 ~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~~  258 (436)
T PLN02241        179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQAY  258 (436)
T ss_pred             EEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEEE
Confidence             0000000 000000     00       000123466789999999987633221111122347777788888887776


Q ss_pred             ee
Q psy3650         403 PI  404 (435)
Q Consensus       403 p~  404 (435)
                      ++
T Consensus       259 ~~  260 (436)
T PLN02241        259 LF  260 (436)
T ss_pred             ee
Confidence            55

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=86.36  E-value=2.9  Score=36.64  Aligned_cols=42  Identities=14%  Similarity=0.265  Sum_probs=33.2

Q ss_pred             HHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650          53 MHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT   94 (435)
Q Consensus        53 n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~   94 (435)
                      ..+++....|+++++++|. .++++.++.+++.+...+.++++
T Consensus        80 ~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~  122 (233)
T cd02518          80 YQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS  122 (233)
T ss_pred             HHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            3344445579999999999 78999999999988766667765

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=86.32  E-value=3  Score=35.30  Aligned_cols=43  Identities=12%  Similarity=0.340  Sum_probs=39.4

Q ss_pred             CHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650         272 GLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       272 g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~  314 (435)
                      |.-.++-.|+....+++++++-+|.- ++++.+..|.....+.+
T Consensus        73 GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~  116 (192)
T COG0746          73 GPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTG  116 (192)
T ss_pred             CCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence            88999999999999999999999995 89999999999887655

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=86.20  E-value=5.3  Score=34.97  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=51.1

Q ss_pred             EEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccC--CEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG--NFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         9 EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~g--d~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      +|+||-....+...+.+.++.. .....+.+.......|.++++..|......  +-++++.+|...+.+ +..+++...
T Consensus        48 ~v~iv~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~  125 (233)
T cd06425          48 EIILAVNYRPEDMVPFLKEYEK-KLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHK  125 (233)
T ss_pred             EEEEEeeeCHHHHHHHHhcccc-cCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHH
Confidence            5555544333333333332211 123345554345567888999988887753  335667899876655 688888776


Q ss_pred             cCCCcEEEEe
Q psy3650          87 QENLDVVTGT   96 (435)
Q Consensus        87 ~~~~~~v~g~   96 (435)
                      +.++++++..
T Consensus       126 ~~~~~~~~~~  135 (233)
T cd06425         126 KHGAEGTILV  135 (233)
T ss_pred             HcCCCEEEEE
Confidence            6777765544

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=86.16  E-value=5.8  Score=33.44  Aligned_cols=76  Identities=20%  Similarity=0.303  Sum_probs=55.3

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCC--EEEEEcCCC-CCCCCcHHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN--FIIIMDADL-SHHPKFIPEMIKL   84 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd--~i~~lD~D~-~~~~~~l~~~~~~   84 (435)
                      -+||||-..-   ..+..+...... +.++++. .+...|.+.++..|+..+.++  .++++-+|. .+.|+.+.++++.
T Consensus        47 ~~vivV~g~~---~~~~~~a~~~~~-~~~~v~n-pd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~  121 (199)
T COG2068          47 DRVIVVTGHR---VAEAVEALLAQL-GVTVVVN-PDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAA  121 (199)
T ss_pred             CeEEEEeCcc---hhhHHHhhhccC-CeEEEeC-cchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHh
Confidence            4788885443   344444443322 3345543 345679999999999999865  999999999 5899999999999


Q ss_pred             HhcC
Q psy3650          85 QQQE   88 (435)
Q Consensus        85 ~~~~   88 (435)
                      +...
T Consensus       122 ~~~~  125 (199)
T COG2068         122 FRAR  125 (199)
T ss_pred             cccc
Confidence            9655

>PLN02248 cellulose synthase-like protein

Probab=85.93  E-value=0.63  Score=49.08  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=63.5

Q ss_pred             eEEEccCCCCC-----CHHHHHHHHHh----hccCCEEEEEcCCCCC-CCCcHHHHHHHHhc---CCCcEEEEeeeecCC
Q psy3650          36 KIVLKPRKKKL-----GLGTAYMHGLK----YATGNFIIIMDADLSH-HPKFIPEMIKLQQQ---ENLDVVTGTRYVGTG  102 (435)
Q Consensus        36 ~i~~~~~~~n~-----g~~~a~n~gl~----~a~gd~i~~lD~D~~~-~~~~l~~~~~~~~~---~~~~~v~g~~~~~~~  102 (435)
                      .++|+..+.+-     -|++|+|.-++    ...|+||+.+|+|... ++..+.+.+=.+.+   +...+|..++....-
T Consensus       586 ~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQrF~~I  665 (1135)
T PLN02248        586 MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQRFEGI  665 (1135)
T ss_pred             eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcccCCC
Confidence            45666444433     48999998886    4568999999999965 55588888877765   355667777655433


Q ss_pred             CccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650         103 GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL  148 (435)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (435)
                      .... ++..+. .-++.....-+-+...+...|.-.++||+++-..
T Consensus       666 ~k~D-~Ygn~~-~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~  709 (1135)
T PLN02248        666 DPSD-RYANHN-TVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGF  709 (1135)
T ss_pred             CCCC-ccCCcc-eeeeeeeeccccccCCccccccCceeeehhhcCc
Confidence            2211 111111 1111111122223333333344457899888654

>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=85.79  E-value=1.3  Score=37.72  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=40.9

Q ss_pred             CeEEEEEeCCCCcC--hHHHHHHHHHHhCCceEEEccCCC-------CCCH---HHHHHHHHhhcc-------CCEEEEE
Q psy3650           7 PYEIIVIDDGSPDG--TLDAAKQLQSIYGSEKIVLKPRKK-------KLGL---GTAYMHGLKYAT-------GNFIIIM   67 (435)
Q Consensus         7 ~~EiivvDd~S~d~--t~~i~~~~~~~~~~~~i~~~~~~~-------n~g~---~~a~n~gl~~a~-------gd~i~~l   67 (435)
                      +.-.|||+|+++-.  +.+++++.     .+...++....       +..+   ...+|.|+++.+       ..+|.|.
T Consensus        10 ~l~WIVVEd~~~~~~~v~~lL~~s-----gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFa   84 (207)
T PF03360_consen   10 PLHWIVVEDSEETTPLVARLLRRS-----GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFA   84 (207)
T ss_dssp             SEEEEEEESSSS--HHHHHHHHHH-----TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE-
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHc-----CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEEC
Confidence            78899999987432  44555543     23344332221       1112   457999998887       2688899


Q ss_pred             cCCCCCCCCcHHHH
Q psy3650          68 DADLSHHPKFIPEM   81 (435)
Q Consensus        68 D~D~~~~~~~l~~~   81 (435)
                      |+|..++...+++|
T Consensus        85 DDdNtYdl~LF~em   98 (207)
T PF03360_consen   85 DDDNTYDLRLFDEM   98 (207)
T ss_dssp             -TTSEE-HHHHHHH
T ss_pred             CCCCeeeHHHHHHH
Confidence            99999988777773

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=85.69  E-value=16  Score=34.75  Aligned_cols=163  Identities=12%  Similarity=0.159  Sum_probs=94.1

Q ss_pred             EEEecCCCCCCHHHHHHHHHhhc-cC-C-EEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHH
Q psy3650         262 IVLKPRKKKLGLGTAYMHGLKYA-TG-N-FIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK  337 (435)
Q Consensus       262 i~~~~~~~n~g~~~a~n~g~~~a-~~-d-~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  337 (435)
                      +.++...+..|-++|+.++...- .+ + .++++.+|.- +.++.|+.|++.....+.++.+-.-...+....++ ..+.
T Consensus        69 v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGR-Ivr~  147 (460)
T COG1207          69 VEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGR-IVRD  147 (460)
T ss_pred             ceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcce-EEEc
Confidence            44444666889999999999986 33 3 6999999995 89999998988776555555443333332221111 0110


Q ss_pred             HHHHHHHHHH---HHhcCCCccccccceeeecHHHHHHhhhc---ccCcccchhhHHHHHHHHCCCcEEEeeeEEeeccc
Q psy3650         338 LVSRGANYLT---QLLLRPGVSDLTGSFRLYKKQVLENLVSS---CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVY  411 (435)
Q Consensus       338 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~  411 (435)
                      -........-   .-.....+..+.+|.++|+.+.+.+....   ....+=++=+|+.-.+...|.++..+-..-.....
T Consensus       148 ~~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~~  227 (460)
T COG1207         148 GNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEVL  227 (460)
T ss_pred             CCCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHhc
Confidence            0000000000   00111345567788899999877776422   22233345688888899999998877665333333


Q ss_pred             cc-ccCCHHHHHHHH
Q psy3650         412 GE-SKLGGTEIFQFA  425 (435)
Q Consensus       412 ~~-s~~~~~~~~~~~  425 (435)
                      |- ++.-+...-+++
T Consensus       228 GVN~R~qLa~~e~~~  242 (460)
T COG1207         228 GVNDRVQLAEAERIM  242 (460)
T ss_pred             CcCcHHHHHHHHHHH
Confidence            43 344444444333

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=85.54  E-value=5.2  Score=39.52  Aligned_cols=181  Identities=10%  Similarity=0.168  Sum_probs=92.9

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT  285 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~  285 (435)
                      +|.-+ ...+..+++.+.+.     .--+|+++-+...+    .++++...   ..+.++..+...|.+.++..|++...
T Consensus        30 lpi~g-kpli~~~l~~l~~~-----gi~~ivvv~~~~~~----~i~~~~~~---~~i~~v~~~~~~Gt~~al~~~~~~l~   96 (481)
T PRK14358         30 HPVAG-RPMVAWAVKAARDL-----GARKIVVVTGHGAE----QVEAALQG---SGVAFARQEQQLGTGDAFLSGASALT   96 (481)
T ss_pred             cEECC-eeHHHHHHHHHHhC-----CCCeEEEEeCCCHH----HHHHHhcc---CCcEEecCCCcCCcHHHHHHHHHHhh
Confidence            34433 46666767666442     12367766543222    23333221   23445555566788899988888753


Q ss_pred             --CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC-------c
Q psy3650         286 --GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG-------V  355 (435)
Q Consensus       286 --~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  355 (435)
                        .+-++++++|. .+.+..+.++++...+.+.++.+......+....+  .... ...  ..+....-..+       .
T Consensus        97 ~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG--~v~~-d~~--g~v~~~~Ek~~~~~~~~~~  171 (481)
T PRK14358         97 EGDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYG--RIVR-GAD--GAVERIVEQKDATDAEKAI  171 (481)
T ss_pred             CCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCce--EEEE-CCC--CCEEEEEECCCCChhHhhC
Confidence              23367799998 57888899999887666655543322222211110  0000 000  00000000000       1


Q ss_pred             cccccceeeecHH---HHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         356 SDLTGSFRLYKKQ---VLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       356 ~~~~~~~~~~~r~---~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      .....|..+|+.+   +++.+........+. =.|+.-.+.+.|.++...+..
T Consensus       172 ~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~-l~d~i~~~~~~g~~i~~~~~~  223 (481)
T PRK14358        172 GEFNSGVYVFDARAPELARRIGNDNKAGEYY-LTDLLGLYRAGGAQVRAFKLS  223 (481)
T ss_pred             CeEEEEEEEEchHHHHHHHhcCCCccCCeEE-HHHHHHHHHHCCCeEEEEecC
Confidence            1234677899944   455552111111232 247777788999888777644

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=85.31  E-value=14  Score=33.08  Aligned_cols=143  Identities=10%  Similarity=0.091  Sum_probs=75.8

Q ss_pred             ceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCc--cHHHHHHHHhcCCCceEEeeeEECCCceeccchhHH
Q psy3650         260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK--FIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRK  337 (435)
Q Consensus       260 ~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~--~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  337 (435)
                      ..+.++..+...|.+.++..+......+-++++.+|..+..+  .+.++++.....+.+++.......... ..+.....
T Consensus        93 ~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~  171 (267)
T cd02541          93 ANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDV-SKYGIVKG  171 (267)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChhcC-ccceEEEe
Confidence            355555555567999999999998866778888899876554  589999877654555433322211110 00111000


Q ss_pred             HH-HHHHHHHHHHhcCC-----CccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEeee
Q psy3650         338 LV-SRGANYLTQLLLRP-----GVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       338 ~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      -. ......+....-..     .-.....|+.+|++++|..+...... .+..+-.++.-++.+.| ++...++
T Consensus       172 d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~  244 (267)
T cd02541         172 EKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVF  244 (267)
T ss_pred             ecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEe
Confidence            00 00000011111111     11234567789999999888431111 11122346666677777 7777665

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=85.28  E-value=3.4  Score=35.05  Aligned_cols=50  Identities=28%  Similarity=0.361  Sum_probs=39.8

Q ss_pred             CCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650          46 LGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTR   97 (435)
Q Consensus        46 ~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~~   97 (435)
                      .|.+.++..|++.+.  +++++++-+|. .+.++.++.+++.+.  ..+.++++.
T Consensus        74 ~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~--~~~~vi~p~  126 (195)
T TIGR03552        74 PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAAT--EGDVVIAPD  126 (195)
T ss_pred             CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcc--cCCEEEEec
Confidence            489999999998764  46999999999 579999999999874  345566654

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=85.28  E-value=21  Score=36.43  Aligned_cols=36  Identities=17%  Similarity=0.222  Sum_probs=27.7

Q ss_pred             CHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHH
Q psy3650          47 GLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIK   83 (435)
Q Consensus        47 g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~   83 (435)
                      |||.++-.|+-.|+   .+||-|+|+|..++ +...+.+.
T Consensus       148 gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~  186 (694)
T PRK14502        148 GKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAK  186 (694)
T ss_pred             CcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHH
Confidence            89999999998887   39999999999664 44444443

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=84.89  E-value=6.5  Score=33.92  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=36.5

Q ss_pred             CHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCC
Q psy3650          47 GLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIKLQQQENL   90 (435)
Q Consensus        47 g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~   90 (435)
                      |.+.+...|++..   ..++++++++|. .++++.++.+++.+.+.+.
T Consensus        79 ~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~  126 (218)
T cd02516          79 TRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA  126 (218)
T ss_pred             HHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc
Confidence            5678899999886   468999999999 6899999999998855543

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=84.69  E-value=7  Score=33.07  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=42.2

Q ss_pred             EEecCCCCCCHHHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeee
Q psy3650         263 VLKPRKKKLGLGTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTR  322 (435)
Q Consensus       263 ~~~~~~~n~g~~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~  322 (435)
                      .++.++ ..|.+.++..|++...  ++.++++-+|.- ++++.+.+++..+++  .+.++++.
T Consensus        67 ~~i~~~-~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~--~~~vi~p~  126 (195)
T TIGR03552        67 PVLRDP-GPGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE--GDVVIAPD  126 (195)
T ss_pred             EEEecC-CCCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc--CCEEEEec
Confidence            334344 3489999999998764  468999999986 899999999998753  34455543

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=84.59  E-value=10  Score=31.50  Aligned_cols=90  Identities=16%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCCE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNF  288 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d~  288 (435)
                      ...++.+++.+....      -+|+|+-+.. ..       +. . ..+.+. .......|...++-.|++.+   +.++
T Consensus        15 ~~ll~~~~~~l~~~~------~~iivv~~~~-~~-------~~-~-~~~~~i-~d~~~g~gpl~~~~~gl~~~~~~~~~~   77 (178)
T PRK00576         15 TTLVEHVVGIVGQRC------APVFVMAAPG-QP-------LP-E-LPAPVL-RDELRGLGPLPATGRGLRAAAEAGARL   77 (178)
T ss_pred             cCHHHHHHHHHhhcC------CEEEEECCCC-cc-------cc-c-CCCCEe-ccCCCCCCcHHHHHHHHHHHHhcCCCE
Confidence            455677776554322      2777775432 11       10 1 122332 22333456667777677654   5799


Q ss_pred             EEEEeCCCC-CCCccHHHHHHHHhcCCCceE
Q psy3650         289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVV  318 (435)
Q Consensus       289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v  318 (435)
                      ++++=+|.- ++++.+..++......+..++
T Consensus        78 ~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~  108 (178)
T PRK00576         78 AFVCAVDMPYLTVELIDDLARPAAQTDAEVV  108 (178)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhcCCCcEE
Confidence            999999995 899999999987655444433

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=84.45  E-value=5.7  Score=38.99  Aligned_cols=183  Identities=10%  Similarity=0.130  Sum_probs=94.7

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA  284 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a  284 (435)
                      ++|..+. ..+...++++.+    .. --+++++-....+   ++.+.+ ....  .+.+...++..|.+.++..+++..
T Consensus        25 l~pi~g~-pli~~~l~~l~~----~g-i~~iiiv~~~~~~---~i~~~~-~~~~--~i~~~~~~~~~Gt~~al~~a~~~l   92 (459)
T PRK14355         25 MHPLAGR-PMVSWPVAAARE----AG-AGRIVLVVGHQAE---KVREHF-AGDG--DVSFALQEEQLGTGHAVACAAPAL   92 (459)
T ss_pred             eceeCCc-cHHHHHHHHHHh----cC-CCeEEEEECCCHH---HHHHHh-ccCC--ceEEEecCCCCCHHHHHHHHHHHh
Confidence            3444443 556666666543    11 2366666543222   222223 2211  344444555678889999998876


Q ss_pred             c--CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC-------CC
Q psy3650         285 T--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR-------PG  354 (435)
Q Consensus       285 ~--~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~  354 (435)
                      .  .+.++++++|. .+++..+.++++.....+.++.+.........  .+.... +...  ..+....-.       ..
T Consensus        93 ~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~--~~g~v~-~d~~--g~v~~~~ek~~~~~~~~~  167 (459)
T PRK14355         93 DGFSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPF--GYGRIV-RDAD--GRVLRIVEEKDATPEERS  167 (459)
T ss_pred             hccCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCC--cCCEEE-EcCC--CCEEEEEEcCCCChhHhh
Confidence            4  47899999998 57888999999987655555433321111110  000000 0000  000000000       00


Q ss_pred             ccccccceeeecHHHHHHhhh-ccc--CcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         355 VSDLTGSFRLYKKQVLENLVS-SCV--SKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~-~~~--~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      .....+|..+|+++.+.+... ...  .....+-.|+.-.+.+.|.++...+.
T Consensus       168 ~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~  220 (459)
T PRK14355        168 IREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPV  220 (459)
T ss_pred             ccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEc
Confidence            123456778999987655321 111  11112235777788999988877665

>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function

Probab=84.32  E-value=3.5  Score=37.34  Aligned_cols=78  Identities=18%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             EEEEEeCCCCcChHHHHHHHHHHhCCceEEEcc------------CCC-----CCCHHHHHHHHHhhccC--CEEEEEcC
Q psy3650           9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP------------RKK-----KLGLGTAYMHGLKYATG--NFIIIMDA   69 (435)
Q Consensus         9 EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~------------~~~-----n~g~~~a~n~gl~~a~g--d~i~~lD~   69 (435)
                      -+++-+.++++.+.++++.+.+. ..+.+..++            ...     ..|...+.|.++...++  +|++|+|-
T Consensus        34 ~~~~Y~~~~~~~~~~vL~~Y~~~-g~v~~~~w~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~Di  112 (285)
T PF01697_consen   34 HFYFYDNSSSPSVRKVLKEYERS-GYVEVIPWPLRPKFPDFPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDI  112 (285)
T ss_pred             EEEEEEccCCHHHHHhHHHHhhc-CeEEEEEcccccccCCcccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEecc
Confidence            46677778899999999998764 334444432            011     13567888999888874  89999999


Q ss_pred             CCCCCCCc----HHHHHHHHhc
Q psy3650          70 DLSHHPKF----IPEMIKLQQQ   87 (435)
Q Consensus        70 D~~~~~~~----l~~~~~~~~~   87 (435)
                      |+.+-|..    .+.+.+.+++
T Consensus       113 DE~lvP~~~~~~~~~~~~~l~~  134 (285)
T PF01697_consen  113 DEFLVPTNAPTYPEEFEDLLRE  134 (285)
T ss_pred             ccEEEeccccchhhHHHHHHhh
Confidence            99766654    6666666644

The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.

>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function

Probab=84.21  E-value=13  Score=28.90  Aligned_cols=84  Identities=14%  Similarity=0.129  Sum_probs=50.3

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc--cCCEEEEEcCCC-CCCCCcHHHHH
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADL-SHHPKFIPEMI   82 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a--~gd~i~~lD~D~-~~~~~~l~~~~   82 (435)
                      ..++++|.=++..+.....-...   .+...+.   .+...+.|.-++.+++.+  ..+-++++.+|. .++++.|.+..
T Consensus         9 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~---~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~   82 (122)
T PF09837_consen    9 DGADVVLAYTPDGDHAAFRQLWL---PSGFSFF---PQQGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAF   82 (122)
T ss_dssp             SSSEEEEEE----TTHHHHHHHH----TTSEEE---E--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHH
T ss_pred             CCcCEEEEEcCCccHHHHhcccc---CCCCEEe---ecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Confidence            34777777777766544321111   1233333   356667899999999888  347999999999 78889999999


Q ss_pred             HHHhcCCCcEEEEee
Q psy3650          83 KLQQQENLDVVTGTR   97 (435)
Q Consensus        83 ~~~~~~~~~~v~g~~   97 (435)
                      +.+++  .++|.|+.
T Consensus        83 ~~L~~--~d~VlgPa   95 (122)
T PF09837_consen   83 EALQR--HDVVLGPA   95 (122)
T ss_dssp             HHTTT---SEEEEEB
T ss_pred             HHhcc--CCEEEeec
Confidence            99843  48898875

; PDB: 3CGX_A.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=84.03  E-value=7.1  Score=34.42  Aligned_cols=61  Identities=11%  Similarity=0.152  Sum_probs=39.1

Q ss_pred             ceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650          35 EKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT   96 (435)
Q Consensus        35 ~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~   96 (435)
                      ..+++...+...|.+.... ++...   ..++++++++|. .++++.+..+++...+.+.++++..
T Consensus        63 ~~v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~  127 (245)
T PRK05450         63 GEVVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLA  127 (245)
T ss_pred             CEEEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeee
Confidence            3455433333345444333 33222   358999999999 7899999999998866656666553

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=83.90  E-value=2.7  Score=36.81  Aligned_cols=47  Identities=11%  Similarity=0.116  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHhhcc-CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEE
Q psy3650          47 GLGTAYMHGLKYAT-GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVV   93 (435)
Q Consensus        47 g~~~a~n~gl~~a~-gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v   93 (435)
                      +...+.-.|+.... .++++++|+|. .++++.+..+++.+.+.+..++
T Consensus        83 ~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~  131 (230)
T PRK13385         83 ERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAIC  131 (230)
T ss_pred             hHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEE
Confidence            45677888887764 57899999999 7799999999998865553333

>PLN02436 cellulose synthase A

Probab=83.66  E-value=0.79  Score=48.20  Aligned_cols=51  Identities=12%  Similarity=0.132  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhc----cCCEEEEEeCCC-CCCCccHHHHHHHHhcC----CCceEEeeeE
Q psy3650         273 LGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQQQE----NLDVVTGTRY  323 (435)
Q Consensus       273 ~~~a~n~g~~~a----~~d~v~~~d~D~-~~~~~~l~~~~~~~~~~----~~~~v~~~~~  323 (435)
                      |+.|+|..++.+    ++.||+-+|+|. +-.+..+.+.+-.+.++    +...|.-+..
T Consensus       550 KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQr  609 (1094)
T PLN02436        550 KAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQR  609 (1094)
T ss_pred             hhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcc
Confidence            789999999864    789999999999 58888998888887654    3445554443

>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=83.33  E-value=28  Score=33.75  Aligned_cols=177  Identities=11%  Similarity=0.088  Sum_probs=82.0

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII  290 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~  290 (435)
                      ....+...++.+.+..      -+++++-. ..  ..++.+.+.+.++.+++.....+...|.+.++...  ....|.++
T Consensus        29 gkPli~~~i~~l~~~~------~~i~Ivv~-~~--~~~i~~~~~~~~~~v~~~~~~~~~~~gt~~al~~~--~~~~d~vl   97 (430)
T PRK14359         29 GKPMLFYILKEAFAIS------DDVHVVLH-HQ--KERIKEAVLEYFPGVIFHTQDLENYPGTGGALMGI--EPKHERVL   97 (430)
T ss_pred             CccHHHHHHHHHHHcC------CcEEEEEC-CC--HHHHHHHHHhcCCceEEEEecCccCCCcHHHHhhc--ccCCCeEE
Confidence            4556777777765521      14444432 22  12222223333334444433222335666666542  22468999


Q ss_pred             EEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc-C--CCccccccceeeec
Q psy3650         291 IMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL-R--PGVSDLTGSFRLYK  366 (435)
Q Consensus       291 ~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~  366 (435)
                      ++++|.. ..++.+.++.+    .+.++++......+...  +.....-..+......+... .  .......+|+.+|+
T Consensus        98 v~~gD~p~~~~~~l~~l~~----~~~~~~v~~~~~~~~~~--~g~v~~d~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~  171 (430)
T PRK14359         98 ILNGDMPLVEKDELEKLLE----NDADIVMSVFHLADPKG--YGRVVIENGQVKKIVEQKDANEEELKIKSVNAGVYLFD  171 (430)
T ss_pred             EEECCccCCCHHHHHHHHh----CCCCEEEEEEEcCCCcc--CcEEEEcCCeEEEEEECCCCCcccccceEEEeEEEEEE
Confidence            9999984 56666665542    34454444322222110  00000000000000000000 0  01123456688999


Q ss_pred             HHHHHHhhhcccC---cccchhhHHHHHHHHCCCcEEEeee
Q psy3650         367 KQVLENLVSSCVS---KGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       367 r~~~~~~~~~~~~---~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      +++++++......   ..-.+-.|+.-++.+.|.++..+..
T Consensus       172 ~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~  212 (430)
T PRK14359        172 RKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFV  212 (430)
T ss_pred             HHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEc
Confidence            9999887322111   1111224666788889988876654

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis

Probab=83.27  E-value=33  Score=31.03  Aligned_cols=104  Identities=14%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             eEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC---C------CCC
Q psy3650         202 YTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK---K------KLG  272 (435)
Q Consensus       202 isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~---~------n~g  272 (435)
                      ++||....|=...+..++.|+   +.....++.+.|++|+.+++..+.+.+..... +..+..+..+   .      +..
T Consensus         3 ~~iv~~~~~y~~~~~~~i~Si---l~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~-~~~i~f~~i~~~~~~~~~~~~~~   78 (280)
T cd06431           3 VAIVCAGYNASRDVVTLVKSV---LFYRRNPLHFHLITDEIARRILATLFQTWMVP-AVEVSFYNAEELKSRVSWIPNKH   78 (280)
T ss_pred             EEEEEccCCcHHHHHHHHHHH---HHcCCCCEEEEEEECCcCHHHHHHHHHhcccc-CcEEEEEEhHHhhhhhccCcccc
Confidence            456666533234444445554   44445679999999988777766665543332 3355544431   1      111


Q ss_pred             HHHH---HHHHHhh-c--cCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650         273 LGTA---YMHGLKY-A--TGNFIIIMDADLSHHPKFIPEMIKLQ  310 (435)
Q Consensus       273 ~~~a---~n~g~~~-a--~~d~v~~~d~D~~~~~~~l~~~~~~~  310 (435)
                      .+..   .+..+.. -  .-|=++.+|+|.++..+ |.++.+.+
T Consensus        79 ~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~~  121 (280)
T cd06431          79 YSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKIF  121 (280)
T ss_pred             hhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHHh
Confidence            1211   1222222 1  35889999999987644 77777763

The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=83.27  E-value=11  Score=33.45  Aligned_cols=87  Identities=14%  Similarity=0.059  Sum_probs=51.5

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc---CCEEEEEcCCCCCCCCcHHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKL   84 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~---gd~i~~lD~D~~~~~~~l~~~~~~   84 (435)
                      -+|+|+-....+...+.+.+... .....+.+....+..|.++++..+.....   .+.++++.+|...+. .+..+++.
T Consensus        48 ~~i~iv~~~~~~~i~~~l~~~~~-~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~  125 (257)
T cd06428          48 KEVLLIGFYPESVFSDFISDAQQ-EFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDF-PLQELLEF  125 (257)
T ss_pred             cEEEEEecCCHHHHHHHHHhccc-ccCceEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCC-CHHHHHHH
Confidence            36666644332222233322111 12335555545556788888777766542   477888999987654 58888887


Q ss_pred             HhcCCCcEEEEe
Q psy3650          85 QQQENLDVVTGT   96 (435)
Q Consensus        85 ~~~~~~~~v~g~   96 (435)
                      ..+.++++++..
T Consensus       126 h~~~~~~~tl~~  137 (257)
T cd06428         126 HKKHGASGTILG  137 (257)
T ss_pred             HHHcCCCEEEEE
Confidence            766777765444

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=83.09  E-value=5.6  Score=38.83  Aligned_cols=178  Identities=12%  Similarity=0.228  Sum_probs=90.8

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT  285 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~  285 (435)
                      +|..+ ...+..+++.+.+.    . .-+++++-..-.+   . +++.....   .+.++..++..|.+.++..++....
T Consensus        23 ~~i~g-kpli~~~l~~l~~~----g-~~~iiiv~~~~~~---~-i~~~~~~~---~i~~~~~~~~~G~~~ai~~a~~~l~   89 (451)
T TIGR01173        23 HPLAG-KPMLEHVIDAARAL----G-PQKIHVVYGHGAE---Q-VRKALANR---DVNWVLQAEQLGTGHAVLQALPFLP   89 (451)
T ss_pred             ceeCC-ccHHHHHHHHHHhC----C-CCeEEEEECCCHH---H-HHHHhcCC---CcEEEEcCCCCchHHHHHHHHHhcC
Confidence            34433 46666766666441    1 2265555442222   2 22322222   2333334545688888999988874


Q ss_pred             -CCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCC-------Ccc
Q psy3650         286 -GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP-------GVS  356 (435)
Q Consensus       286 -~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  356 (435)
                       .+.++++++|. .++++.+.++++...+.+..+++ ........   +.... ....  ..+....-..       ...
T Consensus        90 ~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~---~g~v~-~d~~--g~v~~~~ek~~~~~~~~~~~  162 (451)
T TIGR01173        90 DDGDVLVLYGDVPLISAETLERLLEAHRQNGITLLT-AKLPDPTG---YGRII-REND--GKVTAIVEDKDANAEQKAIK  162 (451)
T ss_pred             CCCcEEEEECCcCCcCHHHHHHHHHHHhhCCEEEEE-EecCCCCC---CCEEE-EcCC--CCEEEEEEcCCCChHHhcCc
Confidence             47899999998 57888999999877554322222 22111100   00000 0000  0000000000       011


Q ss_pred             ccccceeeecHHHHHHhhhcccC----cccchhhHHHHHHHHCCCcEEEeee
Q psy3650         357 DLTGSFRLYKKQVLENLVSSCVS----KGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       357 ~~~~~~~~~~r~~~~~~~~~~~~----~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ...+|+.+|+.+.+.+.......    ..+ +-.++...+.+.|+++..++.
T Consensus       163 ~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~-~~~~~~~~l~~~g~~v~~~~~  213 (451)
T TIGR01173       163 EINTGVYVFDGAALKRWLPKLSNNNAQGEY-YLTDVIALAVADGETVRAVQV  213 (451)
T ss_pred             EEEEEEEEEeHHHHHHHHHhcccccccCcE-eHHHHHHHHHHCCCeEEEEEc
Confidence            34566789999986554211111    112 235777778889988877654

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=83.06  E-value=11  Score=33.11  Aligned_cols=60  Identities=12%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             ceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEE
Q psy3650          35 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT   94 (435)
Q Consensus        35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~   94 (435)
                      ..+.+....+..|.++++..+......+.++++.+|..+.+..+..+++...+.+.++++
T Consensus        73 ~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~  132 (240)
T cd02538          73 IRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATV  132 (240)
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEE
Confidence            345544444567899999999888776667777899877666788888766555555544

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals

Probab=83.06  E-value=1.6  Score=44.24  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=64.0

Q ss_pred             eEEEccCCCCC-----CHHHHHHHHHhhc----cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCC----CcEEEEeeeecC
Q psy3650          36 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQQQEN----LDVVTGTRYVGT  101 (435)
Q Consensus        36 ~i~~~~~~~n~-----g~~~a~n~gl~~a----~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~----~~~v~g~~~~~~  101 (435)
                      .++|+..+.+-     -|++|+|.-++.+    .+.||+.+|+|. .-+|..+.+.+=.+.++.    ..+|..++...+
T Consensus       167 ~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQfpq~f~~  246 (720)
T PF03552_consen  167 MLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQFPQRFDG  246 (720)
T ss_pred             eEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeCCceeCC
Confidence            56666444433     4899999988654    489999999999 667888888887775543    555666665543


Q ss_pred             CCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHh
Q psy3650         102 GGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL  148 (435)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (435)
                      -+... .+..+.. -.+.....-+-+...+...|....+||+++-..
T Consensus       247 i~~~d-~y~~~~~-~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~  291 (720)
T PF03552_consen  247 IDKND-RYGNQNR-VFFDINMRGLDGLQGPFYVGTGCFFRREALYGF  291 (720)
T ss_pred             CCcCC-CCCccce-eeeeccccccccCCCceeeecCcceechhhhCC
Confidence            32211 1111111 111111111223333333444457899998755

The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane

>PLN03153 hypothetical protein; Provisional

Probab=82.98  E-value=13  Score=36.23  Aligned_cols=99  Identities=11%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             cCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCccccccceee
Q psy3650         285 TGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRL  364 (435)
Q Consensus       285 ~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
                      ..+|++++|+|+.+..+.|.+++..+. +.....+|.........                   ..++..+ ..+|+..+
T Consensus       210 d~kWfVf~DDDTyf~~~NLv~~Ls~YD-ptkp~YIGs~Se~~~qn-------------------~~f~~~f-A~GGAG~~  268 (537)
T PLN03153        210 DVRWFVLGDDDTIFNADNLVAVLSKYD-PSEMVYVGGPSESHSAN-------------------SYFSHNM-AFGGGGIA  268 (537)
T ss_pred             CCCEEEEecCCccccHHHHHHHHhhcC-CCCCEEecccccccccc-------------------ccccccc-ccCCceEE
Confidence            469999999999987776777776663 45556666553221100                   0001122 23455579


Q ss_pred             ecHHHHHHhhhc---c---cCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         365 YKKQVLENLVSS---C---VSKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       365 ~~r~~~~~~~~~---~---~~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      +++.+++.+...   .   ....+..|.-|..=+.+.|.++...|-
T Consensus       269 LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~g  314 (537)
T PLN03153        269 ISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPG  314 (537)
T ss_pred             EcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCC
Confidence            999777776321   1   123466787766668888888754443

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=82.53  E-value=6.3  Score=34.97  Aligned_cols=63  Identities=19%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             hCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCC--CCcHHHHHHHHhcCCCcEEE
Q psy3650          32 YGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH--PKFIPEMIKLQQQENLDVVT   94 (435)
Q Consensus        32 ~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~--~~~l~~~~~~~~~~~~~~v~   94 (435)
                      -+..++.++++.+..|.|.|..+|=.+..++-++.+=+|+.+.  +..+.+|++..++.+..++.
T Consensus        94 ~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~  158 (291)
T COG1210          94 PPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIG  158 (291)
T ss_pred             ccCceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEE
Confidence            3457889999999999999999999999887555555666554  57899999999776654443

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=82.52  E-value=8.1  Score=36.59  Aligned_cols=50  Identities=16%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             CCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650          46 LGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG   95 (435)
Q Consensus        46 ~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g   95 (435)
                      .|...+...|++....++++++++|. .++++.++.+++.+...+.++++.
T Consensus        78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~  128 (366)
T PRK14489         78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP  128 (366)
T ss_pred             CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence            58888899999998889999999998 679999999999876666666653

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=81.96  E-value=48  Score=31.53  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=38.3

Q ss_pred             CHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeE
Q psy3650         272 GLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRY  323 (435)
Q Consensus       272 g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~  323 (435)
                      +...++..|++....|++++.|+|-- ++++.+.++++.+.+  .+.++....
T Consensus        82 ~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~p  132 (378)
T PRK09382         82 TRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALP  132 (378)
T ss_pred             hHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEE
Confidence            45677888888877799999999975 889999999998754  344444433

>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=81.95  E-value=1.5  Score=41.74  Aligned_cols=78  Identities=22%  Similarity=0.302  Sum_probs=42.3

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhC-----Cc-eEEEccCCCC----CCHH----HHHHHHHhhccCCEEEEEcCCCCC
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYG-----SE-KIVLKPRKKK----LGLG----TAYMHGLKYATGNFIIIMDADLSH   73 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~-----~~-~i~~~~~~~n----~g~~----~a~n~gl~~a~gd~i~~lD~D~~~   73 (435)
                      +.|||-.||+...|.++++++.....     .. .+.+.+.+.+    ++.+    .|++..+..-..+.++++.+|..+
T Consensus       125 fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~i  204 (434)
T PF03071_consen  125 FPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEI  204 (434)
T ss_dssp             S-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE
T ss_pred             ccEEEEecCCcHHHHHHHHHhhhhheeeecCCcCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCccc
Confidence            78999999999999999988854311     00 1111111101    1112    233343433346899999999999


Q ss_pred             CCCcHHHHHHHH
Q psy3650          74 HPKFIPEMIKLQ   85 (435)
Q Consensus        74 ~~~~l~~~~~~~   85 (435)
                      .|++++-+.+.+
T Consensus       205 sPDFf~Yf~~~~  216 (434)
T PF03071_consen  205 SPDFFEYFSATL  216 (434)
T ss_dssp             -TTHHHHHHHHH
T ss_pred             CccHHHHHHHHH
Confidence            999887666554

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=81.70  E-value=6.1  Score=39.04  Aligned_cols=53  Identities=13%  Similarity=0.241  Sum_probs=40.4

Q ss_pred             CCCCCCHHHHHHHHHhhcc---CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650          42 RKKKLGLGTAYMHGLKYAT---GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT   94 (435)
Q Consensus        42 ~~~n~g~~~a~n~gl~~a~---gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~   94 (435)
                      .+...|.+.+.-.|+....   .++++++++|. .+++..+.++++...+.+.++++
T Consensus        77 ~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v  133 (482)
T PRK14352         77 QDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTV  133 (482)
T ss_pred             CCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEE
Confidence            4555688888888888754   37899999998 57888999999987666655543

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=81.18  E-value=23  Score=30.44  Aligned_cols=59  Identities=14%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             eEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650          36 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT   96 (435)
Q Consensus        36 ~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~   96 (435)
                      .+.+....+..|.+.++..+.....++ ++++.+|. +.+..+..+++...+.+..+++..
T Consensus        77 ~~~~~~~~~~~gt~~al~~~~~~i~~d-~lv~~~D~-i~~~~l~~~l~~h~~~~~~~t~~~  135 (214)
T cd04198          77 DEVTIVLDEDMGTADSLRHIRKKIKKD-FLVLSCDL-ITDLPLIELVDLHRSHDASLTVLL  135 (214)
T ss_pred             eEEEecCCCCcChHHHHHHHHhhcCCC-EEEEeCcc-ccccCHHHHHHHHhccCCcEEEEE
Confidence            344444566789999999888876555 67788885 555667888887766666655443

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=81.12  E-value=11  Score=32.97  Aligned_cols=60  Identities=13%  Similarity=0.238  Sum_probs=38.6

Q ss_pred             ceEEEccCCCCCCHHHHHHHHHhhccC--CEEEEEcCCC-CCCCCcHHHHHHHHhcC-CCcEEEE
Q psy3650          35 EKIVLKPRKKKLGLGTAYMHGLKYATG--NFIIIMDADL-SHHPKFIPEMIKLQQQE-NLDVVTG   95 (435)
Q Consensus        35 ~~i~~~~~~~n~g~~~a~n~gl~~a~g--d~i~~lD~D~-~~~~~~l~~~~~~~~~~-~~~~v~g   95 (435)
                      ..+++.......|.++ .-.++.....  |+++++++|. .++++.+..+++...+. ++++++.
T Consensus        63 ~~~~~~~~~~~~gt~~-~~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~  126 (239)
T cd02517          63 GKVVMTSPDHPSGTDR-IAEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATL  126 (239)
T ss_pred             CEEEEcCcccCchhHH-HHHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEE
Confidence            3454433233345544 4444555544  8999999999 78899999999887554 5665443

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>KOG1476|consensus

Probab=80.80  E-value=6.7  Score=35.34  Aligned_cols=73  Identities=15%  Similarity=0.154  Sum_probs=46.7

Q ss_pred             CeEEEEEeCCC--CcChHHHHHHHHHHhCCceEEEccCCCCCC-----HHHHHHHHHhhcc---------CCEEEEEcCC
Q psy3650           7 PYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRKKKLG-----LGTAYMHGLKYAT---------GNFIIIMDAD   70 (435)
Q Consensus         7 ~~EiivvDd~S--~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g-----~~~a~n~gl~~a~---------gd~i~~lD~D   70 (435)
                      +.-+|||.||+  +..+..++++-+     +...++......+     .-..+|.|+.+.+         ..+|.|.|+|
T Consensus       117 nLhWIVVEd~~~~~p~v~~~L~rtg-----l~ythl~~~t~~~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDd  191 (330)
T KOG1476|consen  117 NLHWIVVEDGEGTTPEVSGILRRTG-----LPYTHLVHKTPMGYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDD  191 (330)
T ss_pred             CeeEEEEecCCCCCHHHHHHHHHcC-----CceEEEeccCCCCCccccchhHHHHHHHHHHHhcccccccceEEEEccCC
Confidence            67899999996  233445554432     2222222222222     2467999998876         3689999999


Q ss_pred             CCCCCCcHHHHHHHH
Q psy3650          71 LSHHPKFIPEMIKLQ   85 (435)
Q Consensus        71 ~~~~~~~l~~~~~~~   85 (435)
                      ..++-+.+++ ++..
T Consensus       192 N~YdleLF~e-iR~v  205 (330)
T KOG1476|consen  192 NTYDLELFEE-IRNV  205 (330)
T ss_pred             cchhHHHHHH-Hhcc
Confidence            9999888877 4444

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=80.33  E-value=6.5  Score=33.53  Aligned_cols=44  Identities=16%  Similarity=0.322  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhc
Q psy3650          44 KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQ   87 (435)
Q Consensus        44 ~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~   87 (435)
                      ...|...+...|+.....++++++++|. .++++.++.+++...+
T Consensus        76 ~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         76 PSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             CCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence            3468889999999998889999999999 6799999999998754

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=80.08  E-value=9.9  Score=37.10  Aligned_cols=98  Identities=11%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc--CCEE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GNFI  289 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~--~d~v  289 (435)
                      ...++.+++.+.+.    . .-+++++-....+.    +.++..... ..+.++......|.+.++..+++...  .+.+
T Consensus        33 kpli~~~l~~l~~~----g-i~~ivvv~~~~~~~----i~~~~~~~~-~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~  102 (446)
T PRK14353         33 RPMLAHVLAAAASL----G-PSRVAVVVGPGAEA----VAAAAAKIA-PDAEIFVQKERLGTAHAVLAAREALAGGYGDV  102 (446)
T ss_pred             chHHHHHHHHHHhC----C-CCcEEEEECCCHHH----HHHHhhccC-CCceEEEcCCCCCcHHHHHHHHHHHhccCCCE
Confidence            35666666666442    1 22666554432222    222222211 12222223446687888888887753  5778


Q ss_pred             EEEeCCC-CCCCccHHHHHHHHhcCCCceEEe
Q psy3650         290 IIMDADL-SHHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       290 ~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      +++++|. .++++.+..+++..++ +.++++.
T Consensus       103 lv~~~D~P~i~~~~l~~l~~~~~~-~~~~~i~  133 (446)
T PRK14353        103 LVLYGDTPLITAETLARLRERLAD-GADVVVL  133 (446)
T ss_pred             EEEeCCcccCCHHHHHHHHHhHhc-CCcEEEE
Confidence            8899998 6889999999986643 4555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	435
2z86_A	625	Crystal Structure Of Chondroitin Polymerase From Es		1e-05
2z87_A	624	Crystal Structure Of Chondroitin Polymerase From Es		1e-05
3e25_A	337	Crystal Structure Of M. Tuberculosis Glucosyl-3- Ph		5e-05
4ddz_A	344	Crystal Structure Of Glucosyl-3-Phosphoglycerate Sy		6e-05
3ckj_A	329	Crystal Structure Of A Mycobacterial Protein Length		1e-04
3bcv_A	240	Crystal Structure Of A Putative Glycosyltransferase		7e-04

>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp Length = 625

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           ++++PTYN  + L I +  +     +  Y YE+IV DDGS +   +  ++ +S+   + +
Sbjct: 96  SIVIPTYNRAKILAITLACLCN--QKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYV 153
Query: 263 VLKPRKKKLG--LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 309
               R+K  G  L      GL+ A  N++ I+D D++ +P ++   ++L
Sbjct: 154 ----RQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMEL 198

>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp- Galnac And Udp Length = 624

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 58/109 (53%), Gaps = 8/109 (7%)
Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           ++++PTYN  + L I +  +     +  Y YE+IV DDGS +   +  ++ +S+   + +
Sbjct: 95  SIVIPTYNRAKILAITLACLCN--QKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYV 152
Query: 263 VLKPRKKKLG--LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKL 309
               R+K  G  L      GL+ A  N++ I+D D++ +P ++   ++L
Sbjct: 153 ----RQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMEL 197

>pdb|3E25|A Chain A, Crystal Structure Of M. Tuberculosis Glucosyl-3- Phosphoglycerate Synthase Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 171 NYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGN 230
            +TIGE+            +A  +G ++    +V+LP  NE+  +  ++  I+  +D   
Sbjct: 30  GWTIGEL------------EAAKAGRTI----SVVLPALNEEATIESVIDSISPLVD--G 71
Query: 231 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV-----LKPRKKKLGLGTAYMHGLKYAT 285
              E+IV+D GS D T     ++++I    ++V     L     + G G A    L   +
Sbjct: 72  LVDELIVLDSGSTDDT-----EIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATS 126
Query: 286 GNFIIIMDADL-SHHPKFIPEMI 307
           G+ ++ +D+DL + HP F+P ++
Sbjct: 127 GDIVVFIDSDLINPHPLFVPWLV 149

>pdb|4DDZ|A Chain A, Crystal Structure Of Glucosyl-3-Phosphoglycerate Synthase From Mycobacterium Tuberculosis Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 171 NYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGN 230
            +TIGE+            +A  +G ++    +V+LP  NE+  +  ++  I+  +D   
Sbjct: 50  GWTIGEL------------EAAKAGRTI----SVVLPALNEEATIESVIDSISPLVD--G 91
Query: 231 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV-----LKPRKKKLGLGTAYMHGLKYAT 285
              E+IV+D GS D T     ++++I    ++V     L     + G G A    L   +
Sbjct: 92  LVDELIVLDSGSTDDT-----EIRAIASGARVVSREQALPEVPVRPGKGEALWRSLAATS 146
Query: 286 GNFIIIMDADL-SHHPKFIPEMI 307
           G+ ++ +D+DL + HP F+P ++
Sbjct: 147 GDIVVFIDSDLINPHPLFVPWLV 169

>pdb|3CKJ|A Chain A, Crystal Structure Of A Mycobacterial Protein Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 189 TQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLD 248
           T A +         +V+LP  +E++ +  ++  I+  +D      E+IV+D GS D T  
Sbjct: 37  TVAELEAAKAGRTISVVLPALDEEDTIGSVIDSISPLVD--GLVDELIVLDSGSTDDTEI 94
Query: 249 AAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMI 307
            A    +   S +  L     + G G A    L  + G+ ++ +D+DL + HP F+P ++
Sbjct: 95  RAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLV 154

>pdb|3BCV|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From Bacteroides Fragilis Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 201 KYTVLLPTYNEKENLPIIV-YLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           K +V++P YN ++ L   V  L+ + + +     EII+IDD SPD          + Y +
Sbjct: 6   KVSVIVPIYNVEKYLDQCVQALLAQTLSD----IEIILIDDESPDNCPKICDDYAAQYPN 61
Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289
            K++    KK  GLG A   GL  ATG ++
Sbjct: 62  IKVI---HKKNAGLGXACNSGLDVATGEYV 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	435
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	1e-33
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	9e-26
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	3e-30
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	3e-21
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	9e-16
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	1e-12
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	3e-12
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	3e-12
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	3e-12
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	6e-11
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	1e-11
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	3e-11
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	1e-10
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	1e-10
3bcv_A	240	Putative glycosyltransferase protein; protein stru	3e-10
3bcv_A	240	Putative glycosyltransferase protein; protein stru	3e-10
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	7e-10
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	2e-08
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	4e-09
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	2e-07
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	5e-09
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	7e-08
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Length = 329

 Score =  127 bits (321), Expect = 1e-33
 Identities = 45/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
           +V+LP  +E++ +  ++  I+  +D      E+IV+D GS D T   A    +   S + 
Sbjct: 51  SVVLPALDEEDTIGSVIDSISPLVDG--LVDELIVLDSGSTDDTEIRAVAAGARVVSREQ 108

Query: 263 VLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD-LSHHPKFIPEMIKLQQQENLDVVTGT 321
            L     + G G A    L  + G+ ++ +D+D ++ HP F+P ++      +   +  +
Sbjct: 109 ALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKS 168

Query: 322 RYVGTGGVYGWD--FKRKLVSRGANYLTQLLLRP------GVSDLTGSFRLYKKQVLENL 373
            Y     V             R    + + LL         +    G      +++L ++
Sbjct: 169 FYRRPLNVGDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSV 228

Query: 374 VSSCVSKGYVFQMEMVIRA--RQYNYTIGEVPISFVDRVY-GESKLGGTEIFQFAKALLY 430
                + GY  ++ +++    R     I +V +   +      ++LG     Q    LL 
Sbjct: 229 ---PFAPGYGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRPLAELGAMS-RQVIATLLS 284

Query: 431 LFAT 434
               
Sbjct: 285 RCGI 288

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Length = 329

 Score =  105 bits (264), Expect = 9e-26
 Identities = 34/190 (17%), Positives = 70/190 (36%), Gaps = 14/190 (7%)

Query: 6   YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII 65
              E+IV+D GS D T   A    +   S +  L     + G G A    L  + G+ ++
Sbjct: 77  LVDELIVLDSGSTDDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVV 136

Query: 66  IMDAD-LSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWD--FKRKLVSRGANYLT 122
            +D+D ++ HP F+P ++      +   +  + Y     V             R    + 
Sbjct: 137 FVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVA 196

Query: 123 QLLLRP------GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRA--RQYNYTI 174
           + LL         +    G      +++L ++     + GY  ++ +++    R     I
Sbjct: 197 RPLLAALRPELGCILQPLGGEYAATRELLTSV---PFAPGYGVEIGLLVDTFDRLGLDAI 253

Query: 175 GEVPISFVDR 184
            +V +   + 
Sbjct: 254 AQVNLGVREH 263

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Length = 387

 Score =  119 bits (300), Expect = 3e-30
 Identities = 37/244 (15%), Positives = 80/244 (32%), Gaps = 11/244 (4%)

Query: 199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG 258
               + +LP+ N  + +  I+  I    +      +I+V+D  S DGT   A    +   
Sbjct: 93  GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVY 152

Query: 259 SEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSH-HPKFIPEMIK-LQQQENLD 316
           SE  ++       G G A    L    G+ ++ +DAD     P+    ++  + +   + 
Sbjct: 153 SENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVR 212

Query: 317 VVTG--TRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP--GVSDLTGSFRLYKKQVLEN 372
            V     R    G     D   ++    A  L  L      G         +  +++  +
Sbjct: 213 FVKAAYRRPFRKGESIEEDGGGRVTELTAKPLFNLFYPELAGFVQPLAGEFVADRELFCS 272

Query: 373 LVSSCVSKGYVFQMEMVIRA--RQYNYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLY 430
           +       GY  +  ++I    +     + +V +      +   +      +   +A+  
Sbjct: 273 IPFLT---GYAVETGIMIDVLKKVGLGAMAQVDLGERQNRHQHLRDLSRMSYAVVRAVAR 329

Query: 431 LFAT 434
               
Sbjct: 330 RLRQ 333

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Length = 387

 Score = 93.7 bits (232), Expect = 3e-21
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 11/192 (5%)

Query: 1   MDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT 60
            +      +I+V+D  S DGT   A    +   SE  ++       G G A    L    
Sbjct: 120 NERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTR 179

Query: 61  GNFIIIMDADLSH-HPKFIPEMIK-LQQQENLDVVTG--TRYVGTGGVYGWDFKRKLVSR 116
           G+ ++ +DAD     P+    ++  + +   +  V     R    G     D   ++   
Sbjct: 180 GDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFRKGESIEEDGGGRVTEL 239

Query: 117 GANYLTQLLLRP--GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRA--RQYNY 172
            A  L  L      G         +  +++  ++       GY  +  ++I    +    
Sbjct: 240 TAKPLFNLFYPELAGFVQPLAGEFVADRELFCSIPFLT---GYAVETGIMIDVLKKVGLG 296

Query: 173 TIGEVPISFVDR 184
            + +V +     
Sbjct: 297 AMAQVDLGERQN 308

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* Length = 397

 Score = 77.5 bits (190), Expect = 9e-16
 Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 27/220 (12%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQS--IYGSE 260
            V+ P  +E     ++++ +             ++      D T +A ++        + 
Sbjct: 3   LVVFPFKHEHPE--VLLHNVRVAAAHPRV--HEVLCIGYERDQTYEAVERAAPEISRATG 58

Query: 261 KIVLKPRKKKL-----GLGTAYMHGLKYA----TGNFIIIMDADL-SHHPKFIPEMIKLQ 310
             V    +++L     G G      L+Y         I   DAD+ S  P +I +  +  
Sbjct: 59  TPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEE-A 117

Query: 311 QQENLDVVTG--TRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQ 368
                 +V     R      +        +   G   L        +    G   L +++
Sbjct: 118 ADFGYGLVRHYFPRASTDAMI-----TWMITRTGFALLWPHTELSWIEQPLGGELLMRRE 172

Query: 369 VLENLVSSCV---SKGYVFQMEMVIRARQYNYTIGEVPIS 405
           V   L           +           Q   +I E  I 
Sbjct: 173 VAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIP 212

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* Length = 397

 Score = 68.3 bits (166), Expect = 1e-12
 Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 23/189 (12%)

Query: 9   EIIVIDDGSPDGTLDAAKQLQS--IYGSEKIVLKPRKKKL-----GLGTAYMHGLKYA-- 59
             ++      D T +A ++        +   V    +++L     G G      L+Y   
Sbjct: 30  HEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLE 89

Query: 60  --TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG--TRYVGTGGVYGWDFKRKLV 114
                 I   DAD+ S  P +I +  +        +V     R      +        + 
Sbjct: 90  ETQWERIHFYDADITSFGPDWITKAEE-AADFGYGLVRHYFPRASTDAMI-----TWMIT 143

Query: 115 SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV---SKGYVFQMEMVIRARQYN 171
             G   L        +    G   L +++V   L           +           Q  
Sbjct: 144 RTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQG 203

Query: 172 YTIGEVPIS 180
            +I E  I 
Sbjct: 204 VSIYECYIP 212

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 9/138 (6%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEK 261
           ++++PTYN  +   I+   +    ++     YE+IV DDGS +   +  ++ +S      
Sbjct: 96  SIVIPTYNRAK---ILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFES---LLN 149

Query: 262 IVLKPRKKK-LGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIK-LQQQENLDVVT 319
           I    +K     L      GL+ A  N++ I+D D++ +P ++   ++ L   +N+ ++ 
Sbjct: 150 IKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIG 209

Query: 320 GTRYVGTGGVYGWDFKRK 337
             +Y+ T      DF  +
Sbjct: 210 PRKYIDTSKHTYLDFLSQ 227

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 6   YP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
               E+ + DDGS D TL   ++  + +   + +    +K  G+G+A    ++   G +I
Sbjct: 402 ITDLEVCICDDGSTDDTLRILQEHYANHPRVRFI---SQKNKGIGSASNTAVRLCRGFYI 458

Query: 65  IIMDADLSHHPKFIPEMIK-LQQQENLDVV-TGTRYVG-TGGVYGWDFKRKLVSRGANYL 121
             +D+D    P  +   +   ++  +L  V T  R +   G +    +   + SR     
Sbjct: 459 GQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNLISNGYNWPIYSR----- 513

Query: 122 TQLLLRPGVSDLTGSFRLYKKQVLENL 148
            + L     + +   FR++  +     
Sbjct: 514 -EKLTS---AMICHHFRMFTARAWNLT 536

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 16/147 (10%)

Query: 231 YP-YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 289
               E+ + DDGS D TL   ++  + +   + +    +K  G+G+A    ++   G +I
Sbjct: 402 ITDLEVCICDDGSTDDTLRILQEHYANHPRVRFI---SQKNKGIGSASNTAVRLCRGFYI 458

Query: 290 IIMDADLSHHPKFIPEMIK-LQQQENLDVV-TGTRYVG-TGGVYGWDFKRKLVSRGANYL 346
             +D+D    P  +   +   ++  +L  V T  R +   G +    +   + SR     
Sbjct: 459 GQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNLISNGYNWPIYSR----- 513

Query: 347 TQLLLRPGVSDLTGSFRLYKKQVLENL 373
            + L     + +   FR++  +     
Sbjct: 514 -EKLTS---AMICHHFRMFTARAWNLT 536

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 63.4 bits (154), Expect = 6e-11
 Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKK-LGLGTAYMHGLKYATGNFIII 66
           YE+IV DDGS +   +  ++ +S      I    +K     L      GL+ A  N++ I
Sbjct: 124 YEVIVADDGSKENIEEIVREFES---LLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAI 180

Query: 67  MDADLSHHPKFIPEMIK-LQQQENLDVVTGTRYVGTGGVYGWDFKRK 112
           +D D++ +P ++   ++ L   +N+ ++   +Y+ T      DF  +
Sbjct: 181 LDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQ 227

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Length = 255

 Score = 63.6 bits (155), Expect = 1e-11
 Identities = 32/187 (17%), Positives = 69/187 (36%), Gaps = 35/187 (18%)

Query: 203 TVLLPTYNEKENLPIIVYLITK---------YMDEGNYPYEIIVIDDGSPDGTLDAAKQL 253
           +V++ +YN+ +        + K         + D     +E+ ++DD S + TL+  +  
Sbjct: 4   SVIMTSYNKSD-------YVAKSISSILSQTFSD-----FELFIMDDNSNEETLNVIRPF 51

Query: 254 QS-----IYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDAD-LSHHPKFIPEMI 307
            +      Y S+   +K R +K          ++ A G +I     D +   P  + +M+
Sbjct: 52  LNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIY-MPDRLLKMV 110

Query: 308 K-LQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYK 366
           + L       V+  +        Y  +  R +V        Q+      +    S  +++
Sbjct: 111 RELDTHPEKAVI-YSASK----TYHLNENRDIVKETVRPAAQVTWNAPCAIDHCSV-MHR 164

Query: 367 KQVLENL 373
             VLE +
Sbjct: 165 YSVLEKV 171

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Length = 255

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQS-----IYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN 62
           +E+ ++DD S + TL+  +   +      Y S+   +K R +K          ++ A G 
Sbjct: 31  FELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGE 90

Query: 63  FIIIMDAD-LSHHPKFIPEMIK-LQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY 120
           +I     D +   P  + +M++ L       V+  +        Y  +  R +V      
Sbjct: 91  YITYATDDNIY-MPDRLLKMVRELDTHPEKAVI-YSASK----TYHLNENRDIVKETVRP 144

Query: 121 LTQLLLRPGVSDLTGSFRLYKKQVLENL 148
             Q+      +    S  +++  VLE +
Sbjct: 145 AAQVTWNAPCAIDHCSV-MHRYSVLEKV 171

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Length = 729

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 5/140 (3%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
           + +I+++DGS D +     +    Y  + I      +  G   A    L+     + + +
Sbjct: 32  FNLIIVNDGSTDQSKKLMDEAIKDY-DKNIRFIDLDENSGHAHARNIALEEVETPYFMFL 90

Query: 68  DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 127
           DAD       I   ++     +  +     +      +    + ++    A       LR
Sbjct: 91  DADDELASYAITFYLEKFNNTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKENINSFLR 150

Query: 128 PGVSDLTGSFRLYKKQVLEN 147
              +       +++  ++  
Sbjct: 151 KQSA----CNIIFRTAIVRA 166

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Length = 729

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 17/140 (12%), Positives = 45/140 (32%), Gaps = 5/140 (3%)

Query: 233 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 292
           + +I+++DGS D +     +    Y  + I      +  G   A    L+     + + +
Sbjct: 32  FNLIIVNDGSTDQSKKLMDEAIKDY-DKNIRFIDLDENSGHAHARNIALEEVETPYFMFL 90

Query: 293 DADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR 352
           DAD       I   ++     +  +     +      +    + ++    A       LR
Sbjct: 91  DADDELASYAITFYLEKFNNTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAKENINSFLR 150

Query: 353 PGVSDLTGSFRLYKKQVLEN 372
              +       +++  ++  
Sbjct: 151 KQSA----CNIIFRTAIVRA 166

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Length = 240

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 67
            EII+IDD SPD          + Y     V+   KK  GLG A   GL  ATG ++   
Sbjct: 35  IEIILIDDESPDNCPKICDDYAAQY-PNIKVI--HKKNAGLGMACNSGLDVATGEYVAFC 91

Query: 68  DADLSHHPKFIPEMIKLQQQENLDVVTG 95
           D+D          M  + Q+   D V  
Sbjct: 92  DSDDYVDSDMYMTMYNVAQKYTCDAVFT 119

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Length = 240

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 233 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM 292
            EII+IDD SPD          + Y     V+   KK  GLG A   GL  ATG ++   
Sbjct: 35  IEIILIDDESPDNCPKICDDYAAQY-PNIKVI--HKKNAGLGMACNSGLDVATGEYVAFC 91

Query: 293 DADLSHHPKFIPEMIKLQQQENLDVVTG 320
           D+D          M  + Q+   D V  
Sbjct: 92  DSDDYVDSDMYMTMYNVAQKYTCDAVFT 119

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score = 59.8 bits (144), Expect = 7e-10
 Identities = 36/237 (15%), Positives = 78/237 (32%), Gaps = 35/237 (14%)

Query: 204 VLLPTYNEKEN-LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAA--KQLQSIYGSE 260
           V++  +NE  + L   V+ +       +   EI+++DD S    L       ++ +    
Sbjct: 33  VVIVFHNEAWSTLLRTVHSVINRSPR-HMIEEIVLVDDASERDFLKRPLESYVKKLKVPV 91

Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320
            ++    +++ GL  A + G   + G  I  +DA       ++  ++   + +   VV  
Sbjct: 92  HVI--RMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 149

Query: 321 T---------RYVGTG----GVYGWDFKRKLVSRGANYLTQLLLRPGVSDLT-------- 359
                      Y+       G + W       +     + Q  +     D T        
Sbjct: 150 IIDVISDDTFEYMAGSDMTYGGFNWKL-----NFRWYPVPQREMDRRKGDRTLPVRTPTM 204

Query: 360 -GSFRLYKKQVLENL--VSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGE 413
            G      +   + +    + +       +E+  R  Q   T+  V  S V  V+ +
Sbjct: 205 AGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRK 261

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 33/204 (16%)

Query: 5   NYPYEIIVIDDGSPDGTLDAA--KQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGN 62
           +   EI+++DD S    L       ++ +     ++    +++ GL  A + G   + G 
Sbjct: 59  HMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVI--RMEQRSGLIRARLKGAAVSRGQ 116

Query: 63  FIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT---------RYVGTG----GVYGWDF 109
            I  +DA       ++  ++   + +   VV             Y+       G + W  
Sbjct: 117 VITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKL 176

Query: 110 KRKLVSRGANYLTQLLLRPGVSDLT---------GSFRLYKKQVLENL--VSSCVSKGYV 158
                +     + Q  +     D T         G      +   + +    + +     
Sbjct: 177 -----NFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGG 231

Query: 159 FQMEMVIRARQYNYTIGEVPISFV 182
             +E+  R  Q   T+  V  S V
Sbjct: 232 ENLEISFRIWQCGGTLEIVTCSHV 255

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score = 57.5 bits (138), Expect = 4e-09
 Identities = 39/237 (16%), Positives = 83/237 (35%), Gaps = 36/237 (15%)

Query: 203 TVLLPTYNEKEN-LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEK 261
           +V++  +NE  + L   V  + K     +   EII++DD S          L       +
Sbjct: 69  SVVITFHNEARSALLRTVVSVLKKSPP-HLIKEIILVDDYS---NDPEDGALLGKIEKVR 124

Query: 262 IVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT 321
           ++     ++ GL  + + G   A    +  +D+    +  ++  +++   ++   VV+  
Sbjct: 125 VL--RNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPI 182

Query: 322 ---------RYVGTG----GVYGWDFKRKLVSRGANYLTQLLLRPGVSD---------LT 359
                    +YVG      G + W+          +Y+T    R    +         + 
Sbjct: 183 IDVINMDNFQYVGASADLKGGFDWNL-----VFKWDYMTPEQRRSRQGNPVAPIKTPMIA 237

Query: 360 GSFRLYKKQVLENLV--SSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGES 414
           G   +  K   E L      +       +E+  R  Q   ++  +P S V  V+ + 
Sbjct: 238 GGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQ 294

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 34/202 (16%)

Query: 5   NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
           +   EII++DD S          L       +++     ++ GL  + + G   A    +
Sbjct: 96  HLIKEIILVDDYS---NDPEDGALLGKIEKVRVL--RNDRREGLMRSRVRGADAAQAKVL 150

Query: 65  IIMDADLSHHPKFIPEMIKLQQQENLDVVTGT---------RYVGTG----GVYGWDFKR 111
             +D+    +  ++  +++   ++   VV+           +YVG      G + W+   
Sbjct: 151 TFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNL-- 208

Query: 112 KLVSRGANYLTQLLLRPGVSD---------LTGSFRLYKKQVLENLV--SSCVSKGYVFQ 160
                  +Y+T    R    +         + G   +  K   E L      +       
Sbjct: 209 ---VFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGEN 265

Query: 161 MEMVIRARQYNYTIGEVPISFV 182
           +E+  R  Q   ++  +P S V
Sbjct: 266 LEISFRVWQCGGSLEIIPCSRV 287

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score = 57.2 bits (137), Expect = 5e-09
 Identities = 43/233 (18%), Positives = 81/233 (34%), Gaps = 24/233 (10%)

Query: 203 TVLLPTYNEKEN--LPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
           ++++P +NE  +  L  +  ++ +   E     EI+++DD S    L   K L+      
Sbjct: 115 SIIIPFHNEGWSSLLRTVHSVLNRSPPE--LVAEIVLVDDFSDREHLK--KPLEDYMALF 170

Query: 261 KIVLKPRKKK-LGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
             V   R KK  GL    M G   ATG+ I  +D+    +  ++P ++    +    +V 
Sbjct: 171 PSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVC 230

Query: 320 GT---------RYVGTG-----GVYGWDFKRKLVSRGANYLTQLLLRPGVSD-LTGSFRL 364
                      RY         G + W+   K +             P  S  + G    
Sbjct: 231 PMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFA 290

Query: 365 YKKQVLENL--VSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGESK 415
             ++    L      +      Q E+  +       + ++P S V  +Y +  
Sbjct: 291 VDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYV 343

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score = 53.7 bits (128), Expect = 7e-08
 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 17/123 (13%)

Query: 5   NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKK-LGLGTAYMHGLKYATGNF 63
               EI+++DD S    L   K L+        V   R KK  GL    M G   ATG+ 
Sbjct: 142 ELVAEIVLVDDFSDREHLK--KPLEDYMALFPSVRILRTKKREGLIRTRMLGASVATGDV 199

Query: 64  IIIMDADLSHHPKFIPEMIKLQQQENLDVVTGT---------RYVGTG-----GVYGWDF 109
           I  +D+    +  ++P ++    +    +V            RY         G + W+ 
Sbjct: 200 ITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEM 259

Query: 110 KRK 112
             K
Sbjct: 260 YYK 262

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* Length = 657

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 38/244 (15%), Positives = 73/244 (29%), Gaps = 35/244 (14%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKI 262
            V +PT+N   +    +  +T           +IV D G             +     ++
Sbjct: 183 AVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRL 242

Query: 263 VLKPRKKKLGLGTAYMHGLKYATGN----FIIIMDADLSHHPKFIPEMIKL--------- 309
            +   +  LG    Y   +  A  N     I+ MD D+   P  I  ++ +         
Sbjct: 243 SIHD-QPNLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPML 301

Query: 310 ------------QQQENLDVVTGTRYVGTGGV---YGWDFKRKLVSRGANYLTQLLLRPG 354
                             +VV  + ++ T      Y  DF    ++   +    L  R  
Sbjct: 302 VGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDFAEYPLNDNNSRSKLLHRRID 361

Query: 355 VSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMV---IRARQYNYTIGEVPISFVDRVY 411
           V        +  +QV E L           + +     +RA ++ Y    +P + +  + 
Sbjct: 362 VDYNGWWTCMIPRQVAEELG---QPLPLFIKWDDADYGLRAAEHGYPTVTLPGAAIWHMA 418

Query: 412 GESK 415
              K
Sbjct: 419 WSDK 422

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 67/453 (14%), Positives = 134/453 (29%), Gaps = 89/453 (19%)

Query: 1   MDEGNYPYEIIV-------IDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM 53
             E  Y Y+ I+       +D+       D  K + S    + I++         GT  +
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS---GTLRL 67

Query: 54  HGLKYATGNFII--IMDADLSHHPKFIPEMIKLQ-QQENLDVVTGTRYVGTGGVYGWD-- 108
                +    ++   ++  L  + KF+   IK + +Q ++       Y+        D  
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT---RMYIEQRDRLYNDNQ 124

Query: 109 -FKRKLVSRGANY--LTQLL--LRPG----VSDLTGSFRLYKKQVLENLVSSCVSKGYVF 159
            F +  VSR   Y  L Q L  LRP     +  + GS     K  +   V  C+S     
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----GKTWVALDV--CLSYKVQC 178

Query: 160 QMEMVIRARQYNYTIGEVPISFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIV 219
           +M+  I    +   +           V      +      N  +    + N K  +  I 
Sbjct: 179 KMDFKI----FWLNLKNC---NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 220 YLITKYMDEGNYPYEIIVIDDGSPDGTLDA----AKQL---------QSIYGSEKIVLKP 266
             + + +    Y   ++V+ +       +A     K L           +  +    +  
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 267 RKKKLGLGTAYMHGLKYATGNFIIIMDADLSH-----HPKFIPEMIKLQQQENLDVVTGT 321
               + L    +  L      ++     DL       +P+ +  +I    ++ L      
Sbjct: 292 DHHSMTLTPDEVKSL-LL--KYLDCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNW 347

Query: 322 RYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR-----------LY----K 366
           ++V        D    ++    N L     R     L   F            L      
Sbjct: 348 KHVNC------DKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVI 400

Query: 367 KQVLENLVSSCVSKGYVFQMEMVIRARQYNYTI 399
           K  +  +V+       V +     + ++   +I
Sbjct: 401 KSDVMVVVNKLHKYSLVEK-----QPKESTISI 428

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	435
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	100.0
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	99.96
3bcv_A	240	Putative glycosyltransferase protein; protein stru	99.96
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	99.94
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	99.94
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	99.94
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.93
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.93
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	99.92
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	99.91
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	99.91
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	99.89
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.89
3bcv_A	240	Putative glycosyltransferase protein; protein stru	99.87
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	99.86
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	99.83
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	99.83
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	99.81
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	99.8
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	99.79
2zu9_A	394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	99.79
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.77
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	99.76
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.75
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	99.71
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	99.7
2wvl_A	391	Mannosyl-3-phosphoglycerate synthase; GT-A fold, t	99.68
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	99.62
2zu9_A	394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	99.48
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	99.43
2wvl_A	391	Mannosyl-3-phosphoglycerate synthase; GT-A fold, t	99.36
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	99.03
1fo8_A	343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	98.78
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	98.44
2c0n_A	203	A197; thermophil protein, thermophilic virus, STIV	98.41
2c0n_A	203	A197; thermophil protein, thermophilic virus, STIV	98.22
1fo8_A	343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	97.73
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	96.91
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	96.72
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	95.74
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	95.65
3cu0_A	281	Galactosylgalactosylxylosylprotein 3-beta- glucuro	95.58
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	94.72
1v84_A	253	Galactosylgalactosylxylosylprotein 3-beta- glucuro	94.46
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	94.23
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	94.19
2d0j_A	246	Galactosylgalactosylxylosylprotein 3-beta- glucuro	94.16
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	94.04
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	93.79
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	93.66
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	93.65
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	93.4
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	92.58
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	92.37
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	92.16
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	92.13
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	91.97
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	91.77
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	91.75
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	91.65
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	91.44
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	90.97
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	90.76
1omz_A	293	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; ro	90.38
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	89.91
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	89.52
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	89.17
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	88.59
1yp2_A	451	Glucose-1-phosphate adenylyltransferase small subu	88.54
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	87.74
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	87.55
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	87.51
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	87.38
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	87.19
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	87.17
3cu0_A	281	Galactosylgalactosylxylosylprotein 3-beta- glucuro	87.02
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	86.87
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	86.82
1v84_A	253	Galactosylgalactosylxylosylprotein 3-beta- glucuro	85.48
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	84.74
3pnn_A	303	Conserved domain protein; structural genomics, PSI	84.7
2d0j_A	246	Galactosylgalactosylxylosylprotein 3-beta- glucuro	84.39
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	84.17
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	84.0
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	83.76
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	83.36
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	83.27
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	83.04
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	82.64
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	82.14
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	82.0
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	81.71
2dpw_A	232	Hypothetical protein TTHA0179; transferase, struct	81.65
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	81.54
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	80.94
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	80.76
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	80.15

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=100.00  E-value=3.1e-44  Score=362.58  Aligned_cols=382  Identities=16%  Similarity=0.139  Sum_probs=273.2

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCC-CCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHH
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ   85 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~-n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~   85 (435)
                      ++|||||||||+|+|.++++++.+. +  .+.++..+. +.|+++++|.|++.|+||||+++|+|+.++|++|+.+++.+
T Consensus       123 ~~eiivvDd~s~d~t~~~~~~~~~~-~--~i~~i~~~~~~~g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~  199 (625)
T 2z86_A          123 DYEVIVADDGSKENIEEIVREFESL-L--NIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELL  199 (625)
T ss_dssp             CEEEEEEEESCSSCHHHHHHTTTTT-S--CEEEEEECCCSCCHHHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHH
T ss_pred             CeEEEEEeCCCchhHHHHHHHhhhc-C--CeEEEEeCCCCcchhHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHH
Confidence            6999999999999999999988543 3  344444333 45799999999999999999999999999999999999999


Q ss_pred             hcCCCcEEEEeeeecCCCccCc-------ccchhh----h-------------hchHHHHHHHHh-----CCCccccccc
Q psy3650          86 QQENLDVVTGTRYVGTGGVYGW-------DFKRKL----V-------------SRGANYLTQLLL-----RPGVSDLTGS  136 (435)
Q Consensus        86 ~~~~~~~v~g~~~~~~~~~~~~-------~~~~~~----~-------------~~~~~~~~~~~~-----~~~~~~~~~~  136 (435)
                      .+++...++|.+..........       .+....    .             ............     ........|+
T Consensus       200 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (625)
T 2z86_A          200 AVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGG  279 (625)
T ss_dssp             HHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTT
T ss_pred             hcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchhhhhccCCccccchhhhcccccccccCCceeEEeec
Confidence            8777778888765443322100       000000    0             000000000000     1112235677


Q ss_pred             eehhhHHHHHHhhccccccC-c-hhhHHHHHHHHhhcceeEeeeeEeeeccccee-------------------------
Q psy3650         137 FRLYKKQVLENLVSSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVVFTT-------------------------  189 (435)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~-~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~~~-------------------------  189 (435)
                      +.++++++++++|++..... | .+|.++++|+.++|+++..+|.....+.....                         
T Consensus       280 ~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  359 (625)
T 2z86_A          280 NVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEGAMAYHQEPPGKENETDRAAGKNITVQLLQQKVPYF  359 (625)
T ss_dssp             EEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECGGGCEEEECCC----------------CTTTTTCTTT
T ss_pred             eeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEcccchhhccCCccccchhhhhhcccchhhhcccCcceE
Confidence            88999999999976654433 3 68999999999999999887654322221110                         


Q ss_pred             ----eee-ecCCCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEE
Q psy3650         190 ----QAI-MSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL  264 (435)
Q Consensus       190 ----~~~-~~~~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~  264 (435)
                          ... ......+|+||||||+||+++.+.++|+++..   |+++++|||||||||+|+|.++++++.+.++.  +.+
T Consensus       360 ~rk~~~~~~~~~~~~~~vsiii~~yn~~~~l~~~l~s~~~---q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~--i~~  434 (625)
T 2z86_A          360 YRKKEKIESATLKRVPLVSIYIPAYNCSKYIVRCVESALN---QTITDLEVCICDDGSTDDTLRILQEHYANHPR--VRF  434 (625)
T ss_dssp             TCCCCCTTTCCCCSSCSEEEEEEESSCTTTHHHHHHHHHS---SSCCSEEEEEEEESCSSSHHHHHHHHHTTCTT--EEE
T ss_pred             EecccccccchhccCCeEEEEEeCCCCHHHHHHHHHHHHh---CcCCCeEEEEEECcCChhHHHHHHHHHhhCCc--EEE
Confidence                000 01112357899999999999999999988754   77889999999999999999999998777665  444


Q ss_pred             ecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECC-Cc-eeccch-hHHHHH
Q psy3650         265 KPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGT-GG-VYGWDF-KRKLVS  340 (435)
Q Consensus       265 ~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~-~~-~~~~~~-~~~~~~  340 (435)
                      +. .+|.|++.|+|.|++.|+||||+++|+|+.+.|++|+.++..+. +++.++|.+.....+ .+ .....+ +..+..
T Consensus       435 ~~-~~n~G~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  513 (625)
T 2z86_A          435 IS-QKNKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDREGNLISNGYNWPIYSR  513 (625)
T ss_dssp             EE-ECCCCHHHHHHHHHHHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEEEEEEECTTSCEEEECCCCSSCCH
T ss_pred             Ee-CCCCCHHHHHHHHHHhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEeeeEEECCCCCEeccCcccccCCH
Confidence            44 67999999999999999999999999999999999999999885 456777777544322 22 111000 000000


Q ss_pred             HHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEee
Q psy3650         341 RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVD  408 (435)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~  408 (435)
                         .    .. .  .....|++++++|++++++|++.+...+.+|+|+++|+.+.| ++.++|....+
T Consensus       514 ---~----~~-~--~~~~~~~~~~~~r~~~~~~ggfd~~~~~~eD~dl~~r~~~~g-~~~~~~~~~~~  570 (625)
T 2z86_A          514 ---E----KL-T--SAMICHHFRMFTARAWNLTEGFNESISNAVDYDMYLKLSEVG-PFKHINKICYN  570 (625)
T ss_dssp             ---H----HH-T--TSCCCCSCEEEEHHHHTTTTCCCSSCSSCHHHHHHHHHTTTS-CEEEEEEEEEE
T ss_pred             ---H----HH-h--hcccCCceEEEEHHHHHHhCCCCCccCChHHHHHHHHHHHhC-CEEEeCCcEEE
Confidence               0    01 1  123456778999999999988777666789999999999999 99999976654

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=99.96  E-value=3.6e-29  Score=234.19  Aligned_cols=211  Identities=16%  Similarity=0.179  Sum_probs=159.8

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      .|++|||||+||+++.|.++|+++.+.+.+...++|||||||||+|+|.++++++........+.++..++|.|++.|+|
T Consensus        93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n  172 (387)
T 3f1y_A           93 GLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMW  172 (387)
T ss_dssp             TCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHH
T ss_pred             CCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHHHH
Confidence            68999999999999999999999987666665689999999999999999998874321111122345667999999999


Q ss_pred             HHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcC-CCceEEeeeEECCCc--eeccchhHHHHHHHHHHHHHHhcC--
Q psy3650         279 HGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQE-NLDVVTGTRYVGTGG--VYGWDFKRKLVSRGANYLTQLLLR--  352 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--  352 (435)
                      .|++.|+||||+++|+|.. ++|++|..++..+.++ ++++|.|.+......  .................+.+..+.  
T Consensus       173 ~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~~~~~~~~~~~~~~~g~v~~~~~~~l~~~~~~~l  252 (387)
T 3f1y_A          173 RALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYRRPFRKGESIEEDGGGRVTELTAKPLFNLFYPEL  252 (387)
T ss_dssp             HHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEECC-------CCBCCSHHHHHTHHHHHHHHCGGG
T ss_pred             HHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeeccccccccccccccCCchhhhhHHHHHHHHhHhh
Confidence            9999999999999999999 8999999999999654 799999987543211  110111222222222222222221  


Q ss_pred             CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHH-HHCCCc-EEEeeeEEeecccc
Q psy3650         353 PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRA-RQYNYT-IGEVPISFVDRVYG  412 (435)
Q Consensus       353 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~-~~~G~~-i~~~p~~~~~~~~~  412 (435)
                      ..+.+++||+++|+|++++++.   +..+|.+|.++++++ .+.|++ |.++|+.++.|.+.
T Consensus       253 ~~~~d~~sG~~a~rR~~l~~i~---f~~gyg~e~ell~~~~~~~G~~~I~eVpi~~~~h~~~  311 (387)
T 3f1y_A          253 AGFVQPLAGEFVADRELFCSIP---FLTGYAVETGIMIDVLKKVGLGAMAQVDLGERQNRHQ  311 (387)
T ss_dssp             TTCSCTTCSCEEEEHHHHTTSC---EECSTTHHHHHHHHHHHHHCGGGEEEEEEEECCCCCC
T ss_pred             ccccccccccEEEEHHHHHhCC---CCCCcchHHHHHHHHHHhcCCCeEEEEecceeecCCC
Confidence            2577889999999999999993   247899999999997 566997 99999999776543

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=99.96  E-value=1.6e-28  Score=217.77  Aligned_cols=204  Identities=23%  Similarity=0.267  Sum_probs=147.1

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..|+||||||+||+++.|+++|+++.+   |.++++|||||||||+|+|.++++++.++++.  +.++. .+|.|.+.|+
T Consensus         3 ~~p~vsViIp~yn~~~~l~~~l~Sl~~---q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~--i~~i~-~~n~G~~~a~   76 (240)
T 3bcv_A            3 LIPKVSVIVPIYNVEKYLDQCVQALLA---QTLSDIEIILIDDESPDNCPKICDDYAAQYPN--IKVIH-KKNAGLGMAC   76 (240)
T ss_dssp             CCCSEEEEEEESSCTTTHHHHHHHHHT---CSSSSEEEEEEECCCSSSHHHHHHHHHHHCSS--EEEEE-CCCCCHHHHH
T ss_pred             CCCcEEEEEecCCCHHHHHHHHHHHHh---CcCCCeEEEEEECCCCcCHHHHHHHHHhhCCC--EEEEE-CCCCChHHHH
Confidence            468999999999999999999998865   77789999999999999999999999988875  44554 4699999999


Q ss_pred             HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECC-Cce----ec-----cchhHHHHHHHHHHHH
Q psy3650         278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGT-GGV----YG-----WDFKRKLVSRGANYLT  347 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~-~~~----~~-----~~~~~~~~~~~~~~~~  347 (435)
                      |.|++.|+||||+|+|+|+.++|++|+.++..+.+++.+++.+...... .+.    ..     ...+..  ..... +.
T Consensus        77 N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~  153 (240)
T 3bcv_A           77 NSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNK--NEIHT-LL  153 (240)
T ss_dssp             HHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC--------------------CEEECSH--HHHHH-HH
T ss_pred             HHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCH--HHHHH-HH
Confidence            9999999999999999999999999999999998767888876543322 110    00     000110  01111 11


Q ss_pred             HHhcCCCc-------cccccceeeecHHHHHHhh-hcccCc-ccchhhHHHHHHHHCCCcEEEeeeEEeecc
Q psy3650         348 QLLLRPGV-------SDLTGSFRLYKKQVLENLV-SSCVSK-GYVFQMEMVIRARQYNYTIGEVPISFVDRV  410 (435)
Q Consensus       348 ~~~~~~~~-------~~~~~~~~~~~r~~~~~~~-~~~~~~-~~~~D~el~lr~~~~G~~i~~~p~~~~~~~  410 (435)
                      ....+...       ...++++++++|++++++| ++.+.. .+.+|+++++|+..+|+++.++|....+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~~~~yr  225 (240)
T 3bcv_A          154 KDLIASDPYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQTFYNYR  225 (240)
T ss_dssp             GGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHHTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC-------
T ss_pred             HHHhhcchhhccccccccchhheeeeHHHHHHcCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCCeEEEE
Confidence            11222110       1134677899999999987 555442 356999999999999999999997665443

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=99.94  E-value=3.3e-26  Score=211.83  Aligned_cols=211  Identities=18%  Similarity=0.222  Sum_probs=152.4

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCC-CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEe-cCCCCCCHH
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNY-PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLK-PRKKKLGLG  274 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~-~~~~n~g~~  274 (435)
                      ...|+||||||+||+++.+.++|+++.+   |.++ .+|||||||||+|+|.++++++...... ++.++ ..++|.|++
T Consensus        45 ~~~~~vSViIp~yN~~~~l~~~l~sl~~---q~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~-~~~~~~~~~~n~G~~  120 (329)
T 3ckj_A           45 KAGRTISVVLPALDEEDTIGSVIDSISP---LVDGLVDELIVLDSGSTDDTEIRAVAAGARVVS-REQALPEVPIRPGKG  120 (329)
T ss_dssp             TTTCCEEEEEEESSCTTTHHHHHHHHGG---GBTTTBSEEEEEECSCCSSHHHHHHHTTCEEEE-HHHHCTTSCCCCSHH
T ss_pred             ccCCcEEEEEeeCCCHHHHHHHHHHHHH---hhCCCCcEEEEEeCCCCchHHHHHHHhhhhhcc-ceeeeccCCCCCCHH
Confidence            3468999999999999999999998865   4444 4899999999999999998886332100 11122 267899999


Q ss_pred             HHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHH-hcCCCceEEeeeEECC--Cceec---cchhHHHHHHHHHHHH
Q psy3650         275 TAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQ-QQENLDVVTGTRYVGT--GGVYG---WDFKRKLVSRGANYLT  347 (435)
Q Consensus       275 ~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~  347 (435)
                      .|+|.|++.|+||||+++|+|+. ++|++|..++..+ .++++++|+|.+....  ++...   ..............+.
T Consensus       121 ~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (329)
T 3ckj_A          121 EALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPLL  200 (329)
T ss_dssp             HHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEECC---------------CHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEecccccCCcccccccccCCCceehhhHHHHH
Confidence            99999999999999999999999 8999999999985 4567899999876543  11000   0001111111111112


Q ss_pred             HHhcC--CCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHH-CCCc-EEEeeeEEeecccccc
Q psy3650         348 QLLLR--PGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQ-YNYT-IGEVPISFVDRVYGES  414 (435)
Q Consensus       348 ~~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~-~G~~-i~~~p~~~~~~~~~~s  414 (435)
                      .....  ..+.++.|++++|+|+++++++   +..+|.+|+|+++++.+ .|++ +.++|+.++.|..+.+
T Consensus       201 ~~~~~~~~~~~~~~~g~~~~rr~~l~~i~---f~~~~~~D~~l~~r~~~~~g~~~i~~v~~~~r~h~~s~~  268 (329)
T 3ckj_A          201 AALRPELGCILQPLGGEYAATRELLTSVP---FAPGYGVEIGLLVDTFDRLGLDAIAQVNLGVREHRNRPL  268 (329)
T ss_dssp             HHHCGGGGGCSCTTCSCEEEEHHHHTTSC---BCCGGGHHHHHHHHHHHHHCGGGEEEEEEEECEECCCCG
T ss_pred             HHhhhhhccccCCCccceeeeHHHHHhCC---CCCCCcccHHHHHHHHHhcCCccEeeecceEEecCCCcH
Confidence            11111  2345678888999999999995   34677899999999876 7876 9999998877755543

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=99.94  E-value=7.9e-27  Score=208.74  Aligned_cols=194  Identities=12%  Similarity=0.137  Sum_probs=149.5

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC--------CCC
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--------KKL  271 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~--------~n~  271 (435)
                      |+||||||+||+++.++++|+++.+   |.++++|||||||||+|+|.++++++.. .+  ++.++..+        +|.
T Consensus         1 p~vSViIp~yn~~~~l~~~l~Sl~~---q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~--~i~~i~~~~~~~~~~~~n~   74 (255)
T 1qg8_A            1 PKVSVIMTSYNKSDYVAKSISSILS---QTFSDFELFIMDDNSNEETLNVIRPFLN-DN--RVRFYQSDISGVKERTEKT   74 (255)
T ss_dssp             CCEEEEEEESSCTTTHHHHHHHHHT---CSCCCEEEEEEECSCCHHHHHHHGGGGG-ST--TEEEEECCCCSHHHHHSSC
T ss_pred             CeEEEEEEcCCCHHHHHHHHHHHHh---ccCCceEEEEEECCCCchHHHHHHHHhh-cC--CEEEEeccccccccccccc
Confidence            6799999999999999999998865   7778999999999999999999998865 44  46666666        799


Q ss_pred             CHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcC-CCceEEeeeEEC--C-CceeccchhHHHHHHHHHHHH
Q psy3650         272 GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQE-NLDVVTGTRYVG--T-GGVYGWDFKRKLVSRGANYLT  347 (435)
Q Consensus       272 g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~  347 (435)
                      |.+.|+|.|++.|+||||+++|+|+.++|++|+.++..+.+. +.++|.+.....  + .+...........        
T Consensus        75 G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--------  146 (255)
T 1qg8_A           75 RYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAA--------  146 (255)
T ss_dssp             HHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCC--------
T ss_pred             CHHHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcchhhccCchH--------
Confidence            999999999999999999999999999999999999999754 788888876543  2 2111000000000        


Q ss_pred             HHhcCCCccccccceeeecHHHHHHhh-hc------ccCcccchhhHHHHHHHHCCCcEEEeeeEEeec
Q psy3650         348 QLLLRPGVSDLTGSFRLYKKQVLENLV-SS------CVSKGYVFQMEMVIRARQYNYTIGEVPISFVDR  409 (435)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~------~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~  409 (435)
                       ...........+++++++|+++++++ ++      .....+.+|+++++|+...| ++.++|.....+
T Consensus       147 -~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g-~~~~~~~~~~~~  213 (255)
T 1qg8_A          147 -QVTWNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFY-PFYPLDEELDLN  213 (255)
T ss_dssp             -SCBSCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC-CBEEEEEEEEEE
T ss_pred             -HHHHhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHhC-CEEEecCcEEEE
Confidence             00112223456778999999999997 55      34455679999999999987 699999765443

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=99.94  E-value=5e-27  Score=228.76  Aligned_cols=214  Identities=15%  Similarity=0.177  Sum_probs=158.4

Q ss_pred             CCCcceEEEEeccCCC-CChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcc-hHHHHHHHHHHhCCceEEEecCCCCCC
Q psy3650         197 SVKNKYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDG-TLDAAKQLQSIYGSEKIVLKPRKKKLG  272 (435)
Q Consensus       197 ~~~~~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~~~~~~~n~g  272 (435)
                      ...|++|||||+||++ +.+.++|+++.+   |.+++  +|||||||+|+|+ |.++++++.+.+|. +++++..++|.|
T Consensus        26 ~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~---q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~-~v~vi~~~~n~G  101 (472)
T 1xhb_A           26 DNLPTTSVVIVFHNEAWSTLLRTVHSVIN---RSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKV-PVHVIRMEQRSG  101 (472)
T ss_dssp             SCCCCEEEEEEESSCCHHHHHHHHHHHHH---SSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSS-CEEEEECSSCCC
T ss_pred             cCCCCeEEEEEeCCCCHHHHHHHHHHHHh---cCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCC-cEEEEECCCCCC
Confidence            3478999999999999 999998888865   55555  6999999999994 99999999887762 466777888999


Q ss_pred             HHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceec-------------cchhHHHH
Q psy3650         273 LGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYG-------------WDFKRKLV  339 (435)
Q Consensus       273 ~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~~~~  339 (435)
                      ++.|+|.|++.|+||||+|+|+|+.++|++|+.++..+.+.+..++++.....+.....             +.......
T Consensus       102 ~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (472)
T 1xhb_A          102 LIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWY  181 (472)
T ss_dssp             HHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEE
T ss_pred             hHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecc
Confidence            99999999999999999999999999999999999999877766666654332221110             00000000


Q ss_pred             HHHHHHHHHHh----cCCCccccccceeeecHHHHHHhhhcccCcc-c-chhhHHHHHHHHCCCcEEEeeeEEeeccccc
Q psy3650         340 SRGANYLTQLL----LRPGVSDLTGSFRLYKKQVLENLVSSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVYGE  413 (435)
Q Consensus       340 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~  413 (435)
                      ...........    .........|++++++|++|+++|++.+... + .||.||++|+.++|+++.++|.+.+.|..+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~~~v~H~~~~  261 (472)
T 1xhb_A          182 PVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRK  261 (472)
T ss_dssp             ECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEEEEEC--
T ss_pred             cCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEccCcEEEEEccC
Confidence            00000011111    0222345678889999999999987765544 2 6899999999999999999999998887766


Q ss_pred             c
Q psy3650         414 S  414 (435)
Q Consensus       414 s  414 (435)
                      +
T Consensus       262 ~  262 (472)
T 1xhb_A          262 A  262 (472)
T ss_dssp             -
T ss_pred             c
Confidence            5

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=99.93  E-value=2.8e-26  Score=227.37  Aligned_cols=210  Identities=15%  Similarity=0.146  Sum_probs=154.2

Q ss_pred             CCcceEEEEeccCCC-CChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcch-HHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650         198 VKNKYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGT-LDAAKQLQSIYGSEKIVLKPRKKKLGL  273 (435)
Q Consensus       198 ~~~~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~~~~~~~n~g~  273 (435)
                      ..|+||||||+||+. +.+.++|.++.+   |++++  +|||||||+|+|+| .++++++.+.++  +++++..++|.|+
T Consensus       110 ~~P~vSVIIp~yNe~~~~L~~~L~Sll~---qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~--~v~vi~~~~n~G~  184 (570)
T 2d7i_A          110 TLPNTSIIIPFHNEGWSSLLRTVHSVLN---RSPPELVAEIVLVDDFSDREHLKKPLEDYMALFP--SVRILRTKKREGL  184 (570)
T ss_dssp             SCCCEEEEEEESSCCHHHHHHHHHHHHH---HSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST--TEEEEECSSCCCH
T ss_pred             CCCCeEEEEEECCCCHHHHHHHHHHHHh---cCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC--eEEEEECCCCCCH
Confidence            468999999999998 888888887765   55555  49999999999999 899999988776  4666778889999


Q ss_pred             HHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccch-----h-HHHHHHHH-HH-
Q psy3650         274 GTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDF-----K-RKLVSRGA-NY-  345 (435)
Q Consensus       274 ~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~-~~~~~~~~-~~-  345 (435)
                      +.|+|.|++.|+||||+|+|+|+.++|++|+.++..+.+++..+|++.....+.....+..     . ..+..... .. 
T Consensus       185 ~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (570)
T 2d7i_A          185 IRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRI  264 (570)
T ss_dssp             HHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCccccccccccccccc
Confidence            9999999999999999999999999999999999999876655554433222221100000     0 00000000 00 


Q ss_pred             -------HHHHhcCCCccccccceeeecHHHHHHhhhcccCccc--chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         346 -------LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGY--VFQMEMVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       346 -------~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~D~el~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                             ..............|+|++++|++|+++|++.+....  .||+||++|+.++|+++.++|.+.+.|..+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r  340 (570)
T 2d7i_A          265 PIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYR  340 (570)
T ss_dssp             CCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCC
T ss_pred             ccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEEEccCeEEEEEcc
Confidence                   0000001123346789999999999999876655433  699999999999999999999988877533

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=99.93  E-value=2.5e-25  Score=218.09  Aligned_cols=207  Identities=18%  Similarity=0.169  Sum_probs=151.0

Q ss_pred             CCcceEEEEeccCCCC-ChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHH
Q psy3650         198 VKNKYTVLLPTYNEKE-NLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLG  274 (435)
Q Consensus       198 ~~~~isivip~~n~~~-~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~  274 (435)
                      ..|+||||||+||++. .|.++|.++.+   |.+++  +|||||||||+|+|.+.   +.+..+  ++.++..++|.|++
T Consensus        64 ~~p~vSVIIp~yN~~~~~L~~~l~Sl~~---q~~~~~~~EIIvVDDgS~D~t~~~---~~~~~~--~v~vi~~~~n~G~~  135 (501)
T 2ffu_A           64 DLPATSVVITFHNEARSALLRTVVSVLK---KSPPHLIKEIILVDDYSNDPEDGA---LLGKIE--KVRVLRNDRREGLM  135 (501)
T ss_dssp             SCCCEEEEEEESSCCHHHHHHHHHHHHH---HSCGGGEEEEEEEECSCSCTHHHH---GGGGBT--TEEEEECSSCCHHH
T ss_pred             CCCCEEEEEEeCcCcHHHHHHHHHHHHh---hCchhhceeEEEEECCCCchHHHH---HHhcCC--CEEEEECCCCcCHH
Confidence            4689999999999997 88888888866   44444  69999999999998543   234555  46677788899999


Q ss_pred             HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCcee-------------ccchhHHHHHH
Q psy3650         275 TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY-------------GWDFKRKLVSR  341 (435)
Q Consensus       275 ~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~~~~  341 (435)
                      .|+|.|++.|+||||+|+|+|+.++|++|+.++..+.+++.++|++.....+....             .+.....+...
T Consensus       136 ~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (501)
T 2ffu_A          136 RSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYM  215 (501)
T ss_dssp             HHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEEC
T ss_pred             HHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccC
Confidence            99999999999999999999999999999999999988777777665433221100             00000000000


Q ss_pred             HHHHHHHH----hcCCCccccccceeeecHHHHHHhhhcccCccc--chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         342 GANYLTQL----LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGY--VFQMEMVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       342 ~~~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~D~el~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                      ........    ..........|++++++|++|++++++.+...+  .||+||++|+.+.|+++.++|.+.+.|..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r  292 (501)
T 2ffu_A          216 TPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFR  292 (501)
T ss_dssp             CHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCC
T ss_pred             CHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCccccccCcchHHHHHHHHhcCCeEEEccCcEEEEEcc
Confidence            00001111    111223456788999999999999877655443  799999999999999999999887766533

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=99.92  E-value=1.4e-24  Score=216.56  Aligned_cols=218  Identities=16%  Similarity=0.065  Sum_probs=151.7

Q ss_pred             CCCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcch--HHHHHHHHHHhCCceEEEecCCCCCCH
Q psy3650         196 DSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGT--LDAAKQLQSIYGSEKIVLKPRKKKLGL  273 (435)
Q Consensus       196 ~~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t--~~~~~~~~~~~~~~~i~~~~~~~n~g~  273 (435)
                      ....|+||||||+||+.+.+.++|+++.++........|||||||||+|++  ....+.+....+  ++.++.++ |.|.
T Consensus       176 ~~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~--~I~vI~~~-N~G~  252 (657)
T 4fix_A          176 APGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGS--RLSIHDQP-NLGG  252 (657)
T ss_dssp             CCSCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGG--GEEEEECC-CCHH
T ss_pred             CCCCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCC--CEEEEECC-CCCH
Confidence            345689999999999999999999888652211115679999999999842  333333333334  57777777 9999


Q ss_pred             HHHHHHHHhhcc----CCEEEEEeCCCCCCCccHHHHHHHHhcCCC-ceEEeeeEECCCc-e-------eccchh--HH-
Q psy3650         274 GTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQQENL-DVVTGTRYVGTGG-V-------YGWDFK--RK-  337 (435)
Q Consensus       274 ~~a~n~g~~~a~----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~-~-------~~~~~~--~~-  337 (435)
                      +.|+|.|++.|.    +|||+++|+|+.++|++|..++..++..+. ++|.|........ .       ......  .. 
T Consensus       253 a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~  332 (657)
T 4fix_A          253 SGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAA  332 (657)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEecccccccccc
Confidence            999999999984    589999999999999999999999976544 4444444433321 0       000000  00 


Q ss_pred             --------H----HHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         338 --------L----VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       338 --------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                              +    ....................+|+|++++|++|+++|+......+.+|+|+|+|+.++|+++.++|-.
T Consensus       333 ~~~~~~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~~F~~~ED~Dl~lR~~~~G~ki~~~p~a  412 (657)
T 4fix_A          333 PHAEYDHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLPLFIKWDDADYGLRAAEHGYPTVTLPGA  412 (657)
T ss_dssp             TTCCSCEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCSCSSSSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ccccccccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChhHhccCcHHHHHHHHHHcCCeEEEECCE
Confidence                    0    0000000111122334556788899999999999987665566679999999999999999999999


Q ss_pred             EeecccccccC
Q psy3650         406 FVDRVYGESKL  416 (435)
Q Consensus       406 ~~~~~~~~s~~  416 (435)
                      .+.|..+.++.
T Consensus       413 ~V~H~~~~~~~  423 (657)
T 4fix_A          413 AIWHMAWSDKD  423 (657)
T ss_dssp             EEEECCSSSSC
T ss_pred             EEEEcCcCccc
Confidence            98886665443

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=99.91  E-value=1.8e-23  Score=214.48  Aligned_cols=230  Identities=13%  Similarity=0.147  Sum_probs=162.4

Q ss_pred             CCCcceEEEEeccCCCCCh-HHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchH---------------HHHHHHHHHhC
Q psy3650         197 SVKNKYTVLLPTYNEKENL-PIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTL---------------DAAKQLQSIYG  258 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l-~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~---------------~~~~~~~~~~~  258 (435)
                      ...|++||+||+||+++.+ +++++++.+   |.+++  +||+||||||+|+|.               +.++++.+..+
T Consensus       137 ~~~P~VSViIPtyNe~~~lL~~~L~Sl~~---q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~  213 (802)
T 4hg6_A          137 EELPTVDILVPSYNEPADMLSVTLAAAKN---MIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELG  213 (802)
T ss_dssp             TTCCCEEEEEECTTCCHHHHHHHHHHHHT---SSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEEECCCCHHHHHHHHHHHHh---ccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcC
Confidence            4568999999999999765 888888755   55655  899999999999983               34555555543


Q ss_pred             CceEEEecCCC-CCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHh-cCCCceEEeeeEECCCceecc--ch
Q psy3650         259 SEKIVLKPRKK-KLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGW--DF  334 (435)
Q Consensus       259 ~~~i~~~~~~~-n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~--~~  334 (435)
                       +++  +..++ +.|++.|+|.|++.+++|||+++|+|+.++|+++.+++..+. +++.++|++.....+......  ..
T Consensus       214 -v~~--i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~  290 (802)
T 4hg6_A          214 -VVY--STRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLAL  290 (802)
T ss_dssp             -CEE--EECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTC
T ss_pred             -cEE--EEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhH
Confidence             233  33334 478999999999999999999999999999999999999994 677888888776554331100  00


Q ss_pred             hHHH---HHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeEEeeccc
Q psy3650         335 KRKL---VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVY  411 (435)
Q Consensus       335 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~~~~~~~  411 (435)
                      +..+   ...+.................|++.++||++++++|++.. ..+.||.+++.|+.++|+++.++|....++..
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~-~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~~  369 (802)
T 4hg6_A          291 GDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAG-ETITEDAETALEIHSRGWKSLYIDRAMIAGLQ  369 (802)
T ss_dssp             CTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCC-SSSSHHHHHHHHHHTTTCCEEECCCCCEEECC
T ss_pred             HhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcCCcCC-CCcchHHHHHHHHHHcCCeEEEecCCEEEecC
Confidence            0000   0111111111111112223578889999999999987553 44679999999999999999999987766654


Q ss_pred             ccccCC-HHHHHHHHHHHHHHhh
Q psy3650         412 GESKLG-GTEIFQFAKALLYLFA  433 (435)
Q Consensus       412 ~~s~~~-~~~~~~~~~~~~~~f~  433 (435)
                      ..+-.. .++..|+..+.++.+.
T Consensus       370 p~t~~~~~~Qr~RW~~G~~q~l~  392 (802)
T 4hg6_A          370 PETFASFIQQRGRWATGMMQMLL  392 (802)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccHHHHHH
Confidence            444333 5667788777776653

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=99.91  E-value=4.1e-23  Score=192.56  Aligned_cols=196  Identities=12%  Similarity=0.088  Sum_probs=139.5

Q ss_pred             EEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC---CceEEEecCC--C--CCCHHH
Q psy3650         203 TVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG---SEKIVLKPRK--K--KLGLGT  275 (435)
Q Consensus       203 sivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~i~~~~~~--~--n~g~~~  275 (435)
                      |+|||.+|++ .+..+++.+.....  .+.+|||||||||+|+|.++++++..+.+   +++++.....  +  |.|++.
T Consensus         2 slVIiP~~eE-~I~~vl~~l~~~~~--~~~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~   78 (397)
T 2bo4_A            2 SLVVFPFKHE-HPEVLLHNVRVAAA--HPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGD   78 (397)
T ss_dssp             CEEEEECCSS-CHHHHHHHHHHHHH--STTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHH
T ss_pred             cEEEEeCCcc-CHHHHHHHHHHhcc--CCCeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHH
Confidence            3444445543 68888888764322  34689999999999999999997665543   3455443322  4  899999


Q ss_pred             HHHHHH----hhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650         276 AYMHGL----KYATGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL  350 (435)
Q Consensus       276 a~n~g~----~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
                      |++.|+    +.++||+++++|+|.+ ++|+++.+|++.+.+ ++|+|.|.+.....+.   ...+.+...+........
T Consensus        79 Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~-g~D~V~g~~~r~~~~~---~~~~~~~~~ll~~~~~~~  154 (397)
T 2bo4_A           79 GMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF-GYGLVRHYFPRASTDA---MITWMITRTGFALLWPHT  154 (397)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHT-TCSEEEEECCCCTTSC---HHHHHTHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHc-CCCEEEEEeccccCCc---HHHHHHHHHHHHHHHHHh
Confidence            999999    8889999999999996 899999999999865 6999999643321110   111111111111111111


Q ss_pred             cCCCccccccceeeecHHHHHHhhhc---ccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         351 LRPGVSDLTGSFRLYKKQVLENLVSS---CVSKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       351 ~~~~~~~~~~~~~~~~r~~~~~~~~~---~~~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      ....+.++.+|+++|+|++++.+...   ....+|++|.++..++.++|+++.++|+.
T Consensus       155 ~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~~~~fg~eiel~~~a~~~G~rI~EVpig  212 (397)
T 2bo4_A          155 ELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIP  212 (397)
T ss_dssp             SGGGCSCTTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECT
T ss_pred             hccccccCCcccEEEeHHHHHHHhhhcccCcCCCcchHHHHHHHHHHcCCEEEEEECc
Confidence            11256677889999999999998532   15678889999999999999999999974

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*

Probab=99.89  E-value=2.9e-25  Score=227.05  Aligned_cols=203  Identities=14%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      +|+||||||+||+++.|+++|+++.+   |+++++|||||||||+|+|.++++++.+.++. ++.++..++|.|.+.|+|
T Consensus         1 Mp~vSVIIp~yN~~~~L~~~L~Sll~---Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~~-~i~~i~~~~n~G~~~arN   76 (729)
T 3l7i_A            1 MNKLTIIVTYYNAEEYITGCLESIKQ---QRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDK-NIRFIDLDENSGHAHARN   76 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEEcCCCHHHHHHHHHHHHh---CCCCCeEEEEEECCCCCcHHHHHHHHHHhCCC-CEEEEECCCCCCHHHHHH
Confidence            47899999999999999999998865   66779999999999999999999999877542 677777788999999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL  358 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (435)
                      .|++.|+||||+++|+|+.+.|++|+.+++.+.  +.+++++........................  ........+...
T Consensus        77 ~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~--~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  152 (729)
T 3l7i_A           77 IALEEVETPYFMFLDADDELASYAITFYLEKFN--NTDGLIAPIHSFTTQRPQFVDLDRVRVEYFN--AKENINSFLRKQ  152 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhccCCEEEEECCCCCCChhHHHHHHHHhc--CCCEEEEeeEEeecCCCccccccceeeeeec--chhhHHHHhhcc
Confidence            999999999999999999999999999999997  5566665543322211100000000000000  000001111234


Q ss_pred             ccceeeecHHHHHHhh-hcccCcccchhhHHHHHHHHCCCcEEEe-eeEEeec
Q psy3650         359 TGSFRLYKKQVLENLV-SSCVSKGYVFQMEMVIRARQYNYTIGEV-PISFVDR  409 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~-~~~~~~~~~~D~el~lr~~~~G~~i~~~-p~~~~~~  409 (435)
                      .+++++++|+++++++ ++.+...+.+|+++++|+..+|.++.++ |....++
T Consensus       153 ~~~~~~~rr~~l~~~gl~fde~~~~~ED~d~~~rl~~~g~~i~~~~~~~~~~y  205 (729)
T 3l7i_A          153 SACNIIFRTAIVRAHHIRFNENLNTYVDWSFVLEYMKYVNKFVRIFNFPFYFR  205 (729)
T ss_dssp             -----------------------------------------------------
T ss_pred             chhheeeeHHHHHHcCCCcCCCCCcccCHHHHHHHHHhcCCEEEecCcEEEEE
Confidence            5566899999999997 5555556789999999999999999999 6655443

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=99.89  E-value=5e-23  Score=207.62  Aligned_cols=212  Identities=18%  Similarity=0.196  Sum_probs=151.5

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCC-CCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCC-CCCHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGN-YPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKK-KLGLGT  275 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~-~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~-n~g~~~  275 (435)
                      ..|+||||||+||+.+.+.++|+++..   |.+ .++|||||||||+|+|.++++++... +  .+.++..+. +.|++.
T Consensus        91 ~~p~vsviIp~~n~~~~l~~~l~sl~~---q~~~~~~eiivvDd~s~d~t~~~~~~~~~~-~--~i~~i~~~~~~~g~~~  164 (625)
T 2z86_A           91 IIDGLSIVIPTYNRAKILAITLACLCN---QKTIYDYEVIVADDGSKENIEEIVREFESL-L--NIKYVRQKDYGYQLCA  164 (625)
T ss_dssp             CCCCEEEEEEESSCHHHHHHHHHHHHT---CCCSSCEEEEEEEESCSSCHHHHHHTTTTT-S--CEEEEEECCCSCCHHH
T ss_pred             cCCcEEEEEecCCcHHHHHHHHHHHHh---hccCCCeEEEEEeCCCchhHHHHHHHhhhc-C--CeEEEEeCCCCcchhH
Confidence            458899999999999888888888765   433 48999999999999999999887443 3  344443432 346999


Q ss_pred             HHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceecc-------chhHH---------HH
Q psy3650         276 AYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGW-------DFKRK---------LV  339 (435)
Q Consensus       276 a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~~---------~~  339 (435)
                      |+|.|++.|+||||+++|+|+.++|++|..++..+.+.+..+++|.+..........       .....         +.
T Consensus       165 a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (625)
T 2z86_A          165 VRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVA  244 (625)
T ss_dssp             HHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC--------
T ss_pred             HHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchh
Confidence            999999999999999999999999999999999998767777777765543221000       00000         00


Q ss_pred             HH--------HHHHHHHH-----hcCCCccccccceeeecHHHHHHhhhcccCccc--chhhHHHHHHHHCCCcEEEeee
Q psy3650         340 SR--------GANYLTQL-----LLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGY--VFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       340 ~~--------~~~~~~~~-----~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ..        +.......     ..........|+|++++|++|+++|++.+....  .+|.|+++|+.++|+++.++|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~  324 (625)
T 2z86_A          245 GKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVEG  324 (625)
T ss_dssp             -------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCEEEECGG
T ss_pred             hhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCceEEEccc
Confidence            00        00000000     011223347888999999999999876655433  5999999999999999999998


Q ss_pred             EEeeccccccc
Q psy3650         405 SFVDRVYGESK  415 (435)
Q Consensus       405 ~~~~~~~~~s~  415 (435)
                      ..+.|..+.+.
T Consensus       325 ~~v~H~~~~~~  335 (625)
T 2z86_A          325 AMAYHQEPPGK  335 (625)
T ss_dssp             GCEEEECCC--
T ss_pred             chhhccCCccc
Confidence            66666554433

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=99.87  E-value=9.7e-22  Score=173.89  Aligned_cols=177  Identities=20%  Similarity=0.184  Sum_probs=119.0

Q ss_pred             CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      +|+..++|||||||||+|+|.++++++.+++|++  .++. ++|.|.++++|.|++.|+||||+|+|+|+.++|++|+.+
T Consensus        29 ~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i--~~i~-~~n~G~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l  105 (240)
T 3bcv_A           29 AQTLSDIEIILIDDESPDNCPKICDDYAAQYPNI--KVIH-KKNAGLGMACNSGLDVATGEYVAFCDSDDYVDSDMYMTM  105 (240)
T ss_dssp             TCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSE--EEEE-CCCCCHHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHH
T ss_pred             hCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCE--EEEE-CCCCChHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHH
Confidence            3555569999999999999999999999888764  4443 579999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEeeeecCCCc-----cC-cccchhhhhc-hHHHHHHHHhCCCc-------cccccceehhhHHHHHH
Q psy3650          82 IKLQQQENLDVVTGTRYVGTGGV-----YG-WDFKRKLVSR-GANYLTQLLLRPGV-------SDLTGSFRLYKKQVLEN  147 (435)
Q Consensus        82 ~~~~~~~~~~~v~g~~~~~~~~~-----~~-~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  147 (435)
                      ++.+++++.+++++.........     .. .......... ..............       ....+++.+++|+++++
T Consensus       106 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~  185 (240)
T 3bcv_A          106 YNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEK  185 (240)
T ss_dssp             HHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHH
T ss_pred             HHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhhcchhhccccccccchhheeeeHHHHHH
Confidence            99998778888877643222111     00 0000000000 00000000111100       01224567999999999


Q ss_pred             hh-ccccc-cCchhhHHHHHHHHhhcceeEeeeeEe
Q psy3650         148 LV-SSCVS-KGYVFQMEMVIRARQYNYTIGEVPISF  181 (435)
Q Consensus       148 ~~-~~~~~-~~~~~d~~l~~r~~~~g~~~~~~~~~~  181 (435)
                      +| ++... ..+.+|+++++|+.+.|+++..+|...
T Consensus       186 ~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~~  221 (240)
T 3bcv_A          186 KHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQTF  221 (240)
T ss_dssp             TTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC---
T ss_pred             cCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCCe
Confidence            76 44433 235689999999999999998877653

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=99.86  E-value=5e-22  Score=185.86  Aligned_cols=179  Identities=16%  Similarity=0.178  Sum_probs=129.7

Q ss_pred             CCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCC-CCCCcHHHHH
Q psy3650           4 GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMI   82 (435)
Q Consensus         4 ~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~-~~~~~l~~~~   82 (435)
                      ...++|||||||||+|+|.++++++.++.....++++..+.|.|++.|+|.|++.|+||||+++|+|+. ++|++|+.++
T Consensus       123 ~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~g~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~  202 (387)
T 3f1y_A          123 APLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVL  202 (387)
T ss_dssp             SCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSHHHHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTH
T ss_pred             CCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCHHHHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHH
Confidence            345799999999999999999998854211111223356789999999999999999999999999999 8999999999


Q ss_pred             HHHhcC-CCcEEEEeeeecCCC--ccCcccchhhhhchHHHHHHHHhC--CCccccccceehhhHHHHHHhhccccccCc
Q psy3650          83 KLQQQE-NLDVVTGTRYVGTGG--VYGWDFKRKLVSRGANYLTQLLLR--PGVSDLTGSFRLYKKQVLENLVSSCVSKGY  157 (435)
Q Consensus        83 ~~~~~~-~~~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (435)
                      +.+.++ ++++|.|.+......  .................+......  ..+.+..+|+++|++++++.++   +..+|
T Consensus       203 ~~l~~~p~~d~v~G~~~~~~~~~~~~~~~~~g~v~~~~~~~l~~~~~~~l~~~~d~~sG~~a~rR~~l~~i~---f~~gy  279 (387)
T 3f1y_A          203 GPVLEVPGVRFVKAAYRRPFRKGESIEEDGGGRVTELTAKPLFNLFYPELAGFVQPLAGEFVADRELFCSIP---FLTGY  279 (387)
T ss_dssp             HHHHHSTTCCEEEEEEECC-------CCBCCSHHHHHTHHHHHHHHCGGGTTCSCTTCSCEEEEHHHHTTSC---EECST
T ss_pred             HHHHHCCCceEEEEeeccccccccccccccCCchhhhhHHHHHHHHhHhhccccccccccEEEEHHHHHhCC---CCCCc
Confidence            999764 799999987543211  111111112222222222222221  2577888999999999999983   34789


Q ss_pred             hhhHHHHHHHH-hhcce-eEeeeeEeeecc
Q psy3650         158 VFQMEMVIRAR-QYNYT-IGEVPISFVDRV  185 (435)
Q Consensus       158 ~~d~~l~~r~~-~~g~~-~~~~~~~~~~r~  185 (435)
                      .+|.++..++. +.|++ +.++|+.+..+.
T Consensus       280 g~e~ell~~~~~~~G~~~I~eVpi~~~~h~  309 (387)
T 3f1y_A          280 AVETGIMIDVLKKVGLGAMAQVDLGERQNR  309 (387)
T ss_dssp             THHHHHHHHHHHHHCGGGEEEEEEEECCCC
T ss_pred             chHHHHHHHHHHhcCCCeEEEEecceeecC
Confidence            99999999984 56987 999998875543

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*

Probab=99.83  E-value=2.4e-20  Score=165.30  Aligned_cols=185  Identities=9%  Similarity=0.023  Sum_probs=121.5

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      .++.+||| |+||+.+.+++||+++.+.+..... +|||||||+|+|.                         .|.+.|+
T Consensus        14 ~~~~iSII-~~yN~~~~l~~~l~sl~~sl~~q~~-~EiIVVDn~s~d~-------------------------~g~a~a~   66 (249)
T 2nxv_A           14 STLMFSVC-SLVRDQAKYDRLLESFERFGFTPDK-AEFLAADNREGNQ-------------------------FHGFSWH   66 (249)
T ss_dssp             CCCSEEEE-EEESCHHHHHHHHHHHHHTTCCTTT-EEEEEEECTTSCS-------------------------CCTTTHH
T ss_pred             CcceEEEE-EeeCCHHHHHHHHHHHHHhccCCCc-EEEEEEECCCCCc-------------------------ccHHHHH
Confidence            35689975 6799999999999988764432222 8999999999862                         3678999


Q ss_pred             HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-----CCCceEEeeeEECCC-ceec-c-chhHHHHHHHHHHHHHH
Q psy3650         278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-----ENLDVVTGTRYVGTG-GVYG-W-DFKRKLVSRGANYLTQL  349 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-----~~~~~v~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~~  349 (435)
                      |.|++.|+|||++|+|+|+.+++++|+.+++.+++     ++.+++.+....... +... . ...............  
T Consensus        67 N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~~~~~~~~vg~vg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--  144 (249)
T 2nxv_A           67 KQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEALEEADPKWLVAGVAGSPWRPLNHSVTAQALHISDVFGNDRRRG--  144 (249)
T ss_dssp             HHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHHHHHHCTTEEEEESEEEESSCSCTTSCCCEEEEEETTEEEEEES--
T ss_pred             HHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhcccCCCCeeEEeecccccCCCCceeeecccccCCccccccccC--
Confidence            99999999999999999999999999999999875     444444332222221 1000 0 000000000000000  


Q ss_pred             hcCCCccccccceeeecHHHHHHhhhcccC-ccc-chhhHHHHHHHHCCCcEEEeeeEEeecccccc
Q psy3650         350 LLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGY-VFQMEMVIRARQYNYTIGEVPISFVDRVYGES  414 (435)
Q Consensus       350 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~~s  414 (435)
                      .....+..+.|+|++++|++   ++++.+. .+| .+|.|+|+|+.++|+++.++|....|...+.+
T Consensus       145 ~~~~~v~~~~g~~~~~rr~~---~~gFDe~~~~~~~~D~Dl~~R~~~~G~~~~~~p~~v~H~~~~~~  208 (249)
T 2nxv_A          145 NVPCRVESLDECFLLMRRLK---PVLNSYDMQGFHYYGADLCLQAEFLGGRAYAIDFHLHHYGRAIA  208 (249)
T ss_dssp             CSSEEEEEECTTEEEEETTB---CCCCCSSCCSSSSHHHHHHHHHHHTTCEEEECCCCCEECCCCCC
T ss_pred             CCceEcCeeeeEeeEEEHhh---hCCCCCCCCCcceehhHHHHHHHHcCCeEEEeccEEEECCCCCC
Confidence            00112334578899999999   4444432 233 37999999999999999999976555443333

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=99.83  E-value=5.8e-20  Score=171.32  Aligned_cols=166  Identities=14%  Similarity=0.072  Sum_probs=123.0

Q ss_pred             CCeEEEEEeCCCCcChHHHHHHHHHHhC---CceEEEccCC--C--CCCHHHHHHHHH----hhccCCEEEEEcCCCC-C
Q psy3650           6 YPYEIIVIDDGSPDGTLDAAKQLQSIYG---SEKIVLKPRK--K--KLGLGTAYMHGL----KYATGNFIIIMDADLS-H   73 (435)
Q Consensus         6 ~~~EiivvDd~S~d~t~~i~~~~~~~~~---~~~i~~~~~~--~--n~g~~~a~n~gl----~~a~gd~i~~lD~D~~-~   73 (435)
                      .++|||||||||+|+|.+++++++++++   ..+++.....  +  |.|+|+|+++|+    +.|+||+|+++|+|.+ +
T Consensus        27 ~~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~  106 (397)
T 2bo4_A           27 PRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSF  106 (397)
T ss_dssp             TTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSC
T ss_pred             CCeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCC
Confidence            3589999999999999999997776554   3445443222  3  899999999999    8899999999999996 8


Q ss_pred             CCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhC----CCccccccceehhhHHHHHHhh
Q psy3650          74 HPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR----PGVSDLTGSFRLYKKQVLENLV  149 (435)
Q Consensus        74 ~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  149 (435)
                      +|+++..+++.+. +++|+|+|.+.....+.       .........+.....+    ..+.++.+|+++|+|++++.+.
T Consensus       107 ~P~~i~~Ll~~l~-~g~D~V~g~~~r~~~~~-------~~~~~~~~~ll~~~~~~~~~~~i~dp~sG~~a~~R~vl~~l~  178 (397)
T 2bo4_A          107 GPDWITKAEEAAD-FGYGLVRHYFPRASTDA-------MITWMITRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLY  178 (397)
T ss_dssp             CHHHHHHHHHHHH-TTCSEEEEECCCCTTSC-------HHHHHTHHHHHHHHCTTSSGGGCSCTTCCCEEEEHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-cCCCEEEEEeccccCCc-------HHHHHHHHHHHHHHHHHhhccccccCCcccEEEeHHHHHHHh
Confidence            9999999999985 46999999743221111       1111111111111221    1456677899999999999884


Q ss_pred             cc---ccccCchhhHHHHHHHHhhcceeEeeee
Q psy3650         150 SS---CVSKGYVFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       150 ~~---~~~~~~~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      ..   ....+|++|.++..++.+.|+++.++|+
T Consensus       179 ~~~~~~~~~~fg~eiel~~~a~~~G~rI~EVpi  211 (397)
T 2bo4_A          179 EDERVRRRSDWGIDTLYTFVTVQQGVSIYECYI  211 (397)
T ss_dssp             HCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEEC
T ss_pred             hhcccCcCCCcchHHHHHHHHHHcCCEEEEEEC
Confidence            22   1567889999999999999999999885

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=99.81  E-value=5.6e-20  Score=164.11  Aligned_cols=169  Identities=11%  Similarity=0.109  Sum_probs=120.9

Q ss_pred             CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCC--------CCCCHHHHHHHHHhhccCCEEEEEcCCCCC
Q psy3650           2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK--------KKLGLGTAYMHGLKYATGNFIIIMDADLSH   73 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~--------~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~   73 (435)
                      .|+..++|||||||||+|+|.++++++++ +++  +.++..+        .|.|.+.++|.|++.|+||||+|+|+|+.+
T Consensus        25 ~q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~~--i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g~~i~~lD~Dd~~  101 (255)
T 1qg8_A           25 SQTFSDFELFIMDDNSNEETLNVIRPFLN-DNR--VRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIY  101 (255)
T ss_dssp             TCSCCCEEEEEEECSCCHHHHHHHGGGGG-STT--EEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCSEEEEEETTEEE
T ss_pred             hccCCceEEEEEECCCCchHHHHHHHHhh-cCC--EEEEecccccccccccccCHHHHHHHHHHHcCCCEEEEeCCCCcc
Confidence            35555699999999999999999999866 444  5555566        799999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHhcC-CCcEEEEeeeec--CCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhh-
Q psy3650          74 HPKFIPEMIKLQQQE-NLDVVTGTRYVG--TGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLV-  149 (435)
Q Consensus        74 ~~~~l~~~~~~~~~~-~~~~v~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (435)
                      +|++|+.+++.++++ ++++|.+.....  ....  ...........      ...........++..+++|++++++| 
T Consensus       102 ~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~rr~~~~~~g~  173 (255)
T 1qg8_A          102 MPDRLLKMVRELDTHPEKAVIYSASKTYHLNENR--DIVKETVRPAA------QVTWNAPCAIDHCSVMHRYSVLEKVKE  173 (255)
T ss_dssp             CTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC-----CEEEEEEECCC------SCBSCCTTTSCGGGEEEETHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCC--cchhhccCchH------HHHHhhcCCCccceEEEEHHHHHhhcc
Confidence            999999999999764 788888876433  2211  01111000000      00001122334566799999999987 


Q ss_pred             cc------ccccCchhhHHHHHHHHhhcceeEeeeeEee
Q psy3650         150 SS------CVSKGYVFQMEMVIRARQYNYTIGEVPISFV  182 (435)
Q Consensus       150 ~~------~~~~~~~~d~~l~~r~~~~g~~~~~~~~~~~  182 (435)
                      ++      .....+.+|++++.|+.+.| ++..+|....
T Consensus       174 ~f~~~~~~~~~~~~~eD~~~~~r~~~~g-~~~~~~~~~~  211 (255)
T 1qg8_A          174 KFGSYWDESPAFYRIGDARFFWRVNHFY-PFYPLDEELD  211 (255)
T ss_dssp             HHSSSSCCCGGGSTTHHHHHHHHHTTTC-CBEEEEEEEE
T ss_pred             cccccccCCcccchHHHHHHHHHHHHhC-CEEEecCcEE
Confidence            44      34445678999999998887 5666665433

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=99.80  E-value=7.8e-20  Score=169.00  Aligned_cols=174  Identities=18%  Similarity=0.217  Sum_probs=120.4

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEc-cCCCCCCHHHHHHHHHhhccCCEEEEEcCCCC-CCCCcHHHHHHH
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLK-PRKKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKL   84 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~-~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~-~~~~~l~~~~~~   84 (435)
                      ++|||||||||+|+|.++++++..+.. .++.++ ..++|.|++.|+|.|++.|+||||+|+|+|+. ++|++|+.+++.
T Consensus        78 ~~eiivVDdgS~D~t~~~~~~~~~~~~-~~~~~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~  156 (329)
T 3ckj_A           78 VDELIVLDSGSTDDTEIRAVAAGARVV-SREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGP  156 (329)
T ss_dssp             BSEEEEEECSCCSSHHHHHHHTTCEEE-EHHHHCTTSCCCCSHHHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHH
T ss_pred             CcEEEEEeCCCCchHHHHHHHhhhhhc-cceeeeccCCCCCCHHHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHH
Confidence            489999999999999999998753210 011222 26789999999999999999999999999998 899999999999


Q ss_pred             Hhc-CCCcEEEEeeeecCC--Ccc---CcccchhhhhchHHHHHHHHhC--CCccccccceehhhHHHHHHhhccccccC
Q psy3650          85 QQQ-ENLDVVTGTRYVGTG--GVY---GWDFKRKLVSRGANYLTQLLLR--PGVSDLTGSFRLYKKQVLENLVSSCVSKG  156 (435)
Q Consensus        85 ~~~-~~~~~v~g~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (435)
                      +.+ +++++|+|.......  +..   ......................  ....+..+++.+|+++++++++   +..+
T Consensus       157 l~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rr~~l~~i~---f~~~  233 (329)
T 3ckj_A          157 LLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSVP---FAPG  233 (329)
T ss_dssp             HHSCSSCCEEEEEEECC---------------CHHHHHTHHHHHHHHCGGGGGCSCTTCSCEEEEHHHHTTSC---BCCG
T ss_pred             HHhCCCccEEEEEecccccCCcccccccccCCCceehhhHHHHHHHhhhhhccccCCCccceeeeHHHHHhCC---CCCC
Confidence            644 678999998754321  100   0001111111111111111111  2345667788999999999996   3467


Q ss_pred             chhhHHHHHHHHh-hcce-eEeeeeEeeec
Q psy3650         157 YVFQMEMVIRARQ-YNYT-IGEVPISFVDR  184 (435)
Q Consensus       157 ~~~d~~l~~r~~~-~g~~-~~~~~~~~~~r  184 (435)
                      |.+|+++++++.+ .|+. +.+++..++.+
T Consensus       234 ~~~D~~l~~r~~~~~g~~~i~~v~~~~r~h  263 (329)
T 3ckj_A          234 YGVEIGLLVDTFDRLGLDAIAQVNLGVREH  263 (329)
T ss_dssp             GGHHHHHHHHHHHHHCGGGEEEEEEEECEE
T ss_pred             CcccHHHHHHHHHhcCCccEeeecceEEec
Confidence            8899999999976 6764 77777765544

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=99.79  E-value=1.4e-19  Score=176.07  Aligned_cols=179  Identities=14%  Similarity=0.155  Sum_probs=127.1

Q ss_pred             eEEEEEeCCCCcC-hHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           8 YEIIVIDDGSPDG-TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         8 ~EiivvDd~S~d~-t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      +|||||||||+|+ |.++++++.+++|. ++.+++.++|.|+++|+|.|++.|+||||+|+|+|+.++|++|+.+++.+.
T Consensus        62 ~EIIvVDd~S~d~~t~~~l~~~~~~~~~-~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~  140 (472)
T 1xhb_A           62 EEIVLVDDASERDFLKRPLESYVKKLKV-PVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIK  140 (472)
T ss_dssp             EEEEEEECSCCCGGGTHHHHHHHHSSSS-CEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHH
T ss_pred             eEEEEEECCCCcHHHHHHHHHHHHHCCC-cEEEEECCCCCChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHH
Confidence            6999999999995 99999999887762 466667888999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEeeeecCCCccCc-------------ccchhhhhchHHHHHHHHh----CCCccccccceehhhHHHHHHhh
Q psy3650          87 QENLDVVTGTRYVGTGGVYGW-------------DFKRKLVSRGANYLTQLLL----RPGVSDLTGSFRLYKKQVLENLV  149 (435)
Q Consensus        87 ~~~~~~v~g~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  149 (435)
                      +++..++++............             ...................    ........+++.+++|++++++|
T Consensus       141 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iG  220 (472)
T 1xhb_A          141 HDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIG  220 (472)
T ss_dssp             HCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTT
T ss_pred             hCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcC
Confidence            777666655432222221110             0000000000000100000    11223445778899999999998


Q ss_pred             ccccccC-c-hhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650         150 SSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       150 ~~~~~~~-~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      ++..... | .+|.|+++|+.++|+++..+|.....+...
T Consensus       221 gfde~~~~~g~ED~dl~~R~~~~G~~i~~~p~~~v~H~~~  260 (472)
T 1xhb_A          221 TYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFR  260 (472)
T ss_dssp             SCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEEEEEC-
T ss_pred             CCCCcccccCchhHHHHHHHHhcCCeEEEccCcEEEEEcc
Confidence            6654333 2 679999999999999999999877766643

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*

Probab=99.79  E-value=4e-18  Score=155.90  Aligned_cols=220  Identities=18%  Similarity=0.192  Sum_probs=146.8

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcch------HHHHHHHHHHhCCceEEEecCCC----
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGT------LDAAKQLQSIYGSEKIVLKPRKK----  269 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t------~~~~~~~~~~~~~~~i~~~~~~~----  269 (435)
                      .++|||||+|||+..+   +..+   +.+....+|||+|||||+|+|      .+.++++....+.... ++....    
T Consensus        51 ~~iSVVIP~yNEE~~l---I~~v---L~~i~~~~eIIvVDDgSrD~tD~~~~~~~~l~~~~~~~~~~~~-Vl~~~~p~v~  123 (394)
T 2zu9_A           51 GKMAVIVPMKNEKLHL---VDGV---LKAIPHKCPIIIVSNSKREGPNRYKLEVDLIRHFYNLTHSKII-MIHQKDPGLA  123 (394)
T ss_dssp             TTEEEEEEESSCCHHH---HHHH---HHHSCTTSCEEEEECCCCSSSCHHHHHHHHHHHHHHHHCCCEE-EEETTCHHHH
T ss_pred             CCEEEEEecCcccHHH---HHHH---HHcCCCCcEEEEEECcCcccccchhhHHHHHHHHhhccccceE-EEecCCcchh
Confidence            4799999999999532   3333   333334689999999998877      7778887766554333 333322    


Q ss_pred             ------------------CCCHHHHHHHHHhhc---cCCEEEEEeCCCCCCCccHHHHHHHHh------cCCCceE-Eee
Q psy3650         270 ------------------KLGLGTAYMHGLKYA---TGNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVV-TGT  321 (435)
Q Consensus       270 ------------------n~g~~~a~n~g~~~a---~~d~v~~~d~D~~~~~~~l~~~~~~~~------~~~~~~v-~~~  321 (435)
                                        +.||+.|+-.|+..|   ++|+|+++|+|. ..|..+.++++.+.      +.++++| .+.
T Consensus       124 ~~~~~~g~~~il~~~~~~r~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl-~iP~~v~~~~kgy~aG~~~a~~~~dmVR~~~  202 (394)
T 2zu9_A          124 KAFKEVGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADN-YIPGAVNEYVKDYAAGFLMSESEYTMVRLHW  202 (394)
T ss_dssp             HHHHHHTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCB-SCHHHHHHHHHHHHHHHHHCCSSSEEEEEEC
T ss_pred             HHhhhccccccccccccccCChHHHHHHHHHHHhhCCCCEEEEEeCCC-CCHHHHHHHHHHhhhcccccccccceeeecc
Confidence                              249999999999999   899999999999 66777777766543      2457777 554


Q ss_pred             eEECC---Cce--eccchhHHHHHHHHHHHHHHhcCCCc---cccccceeeecHHHHHHhhhcccCcccchhhHHHHHHH
Q psy3650         322 RYVGT---GGV--YGWDFKRKLVSRGANYLTQLLLRPGV---SDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRAR  393 (435)
Q Consensus       322 ~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~  393 (435)
                      +..+.   +..  ..++....+.++..+.+.+...+...   ..+.+|.++|+|++++.+   ....+|+.+.+++..+.
T Consensus       203 r~~~~~~~~rl~~~~~GRv~rl~~r~Ln~L~~~l~g~~~d~~~tplsGe~A~rr~ll~~L---~~~~gyGvE~~lLv~~~  279 (394)
T 2zu9_A          203 RHKPKVTKGTLYFKKWGRVSEITNHYLNLLVSEHTAFETTIMVTGNAGEHAMTMKLAEIL---PFSTGYSIEPYEIVYIL  279 (394)
T ss_dssp             C-----------------HHHHHHHHHHHHHHHHHSSCCCCCCCTTCSSEEEEHHHHTTC---CEESGGGHHHHHHHHHH
T ss_pred             ccccccccccccccCCCceehhHHHHHHHHHHHhcCccccCcCCCCchhhHhhHHHHhcC---CCCCCCCCCHHHHHHHH
Confidence            43311   000  12344556777776777776666432   224558899999999988   33468999999999988


Q ss_pred             HC----------------CCcEEEeeeEEeecccccccCCHHHHHHHHHHHHHHhh
Q psy3650         394 QY----------------NYTIGEVPISFVDRVYGESKLGGTEIFQFAKALLYLFA  433 (435)
Q Consensus       394 ~~----------------G~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~  433 (435)
                      ++                |.+|..+... ..|.+.  ......+.+...+++...+
T Consensus       280 r~~~~~~~~~~~~~~~~~g~~I~qve~~-~pH~H~--~~g~~~l~~M~~~~~~~i~  332 (394)
T 2zu9_A          280 ERFGKWENVEEFKDVFDQGIEIFQIETL-NPHFHE--DKGKEHVKEMLLLSLATIY  332 (394)
T ss_dssp             HHHSSCCSCGGGHHHHHHCEEEEEEECS-SCCCBC--CCCHHHHHHHHHHHHHHHH
T ss_pred             HhhCccccccccccccccCceEEEEecc-CCcccc--ccchhHHHHHHHHHHHHHH
Confidence            87                7789888875 333332  2246666666666665443

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=99.77  E-value=2.6e-19  Score=177.41  Aligned_cols=177  Identities=14%  Similarity=0.156  Sum_probs=125.6

Q ss_pred             eEEEEEeCCCCcCh-HHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           8 YEIIVIDDGSPDGT-LDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         8 ~EiivvDd~S~d~t-~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      +|||||||||+|+| .++++++.+++++  |.+++.++|.|++.|+|.|++.|+||||+|+|+|+.++|+||+.+++.+.
T Consensus       145 ~EIIVVDDgS~D~tl~~~l~~~~~~~~~--v~vi~~~~n~G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~  222 (570)
T 2d7i_A          145 AEIVLVDDFSDREHLKKPLEDYMALFPS--VRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIA  222 (570)
T ss_dssp             EEEEEEECSCCCGGGTHHHHHHHTTSTT--EEEEECSSCCCHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHH
T ss_pred             EEEEEEECCCCcHHHHHHHHHHHHhCCe--EEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHH
Confidence            59999999999999 8999999887764  66667788999999999999999999999999999999999999999997


Q ss_pred             cCCCcEEEEeeeecC-CCccCccc----------chhhhhchHH-----HHHHHHhCCCccccccceehhhHHHHHHhhc
Q psy3650          87 QENLDVVTGTRYVGT-GGVYGWDF----------KRKLVSRGAN-----YLTQLLLRPGVSDLTGSFRLYKKQVLENLVS  150 (435)
Q Consensus        87 ~~~~~~v~g~~~~~~-~~~~~~~~----------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (435)
                      +++ ++++++..... ........          ...+......     ...............+++.+++|++++++|+
T Consensus       223 ~~~-~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGg  301 (570)
T 2d7i_A          223 RNR-KTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGG  301 (570)
T ss_dssp             HCT-TEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTS
T ss_pred             hCC-CEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcCC
Confidence            765 44555443221 11110000          0000000000     0000000112233457889999999999976


Q ss_pred             cccccC-c-hhhHHHHHHHHhhcceeEeeeeEeeecccc
Q psy3650         151 SCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVVF  187 (435)
Q Consensus       151 ~~~~~~-~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~~  187 (435)
                      +..... | .+|.|+++|+.++|+++..+|.....+.+.
T Consensus       302 fDe~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~~r  340 (570)
T 2d7i_A          302 YDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYR  340 (570)
T ss_dssp             SCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEECCC
T ss_pred             CCCcccccCcchHHHHHHHHhCCCeEEEccCeEEEEEcc
Confidence            654333 2 689999999999999999999887777644

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=99.76  E-value=4.2e-18  Score=152.67  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=114.4

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      .|+||||||+||+++.|.++|+++...+.+.+.++|||||||+++                         ..++++.++|
T Consensus        64 ~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d-------------------------~~f~~a~a~N  118 (287)
T 2fy7_A           64 PHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGD-------------------------TIFNRAKLLN  118 (287)
T ss_dssp             SCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSS-------------------------SCCCHHHHHH
T ss_pred             CCcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCC-------------------------Cccchhhhhh
Confidence            689999999999999999999999866667778999999999432                         1236788999


Q ss_pred             HHH----hhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650         279 HGL----KYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG  354 (435)
Q Consensus       279 ~g~----~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
                      .|+    +.|+|||++|+|+|+.+.+++..     ... +.    .++.. .      .....+           ....+
T Consensus       119 ~G~~~al~~A~gd~i~flD~D~i~~~d~~~-----~~~-~~----~p~~~-~------~~~~~~-----------~~~~~  170 (287)
T 2fy7_A          119 VGFQEALKDYDYTCFVFSDVDLIPMNDHNA-----YRC-FS----QPRHI-S------VAMDKF-----------GFSLP  170 (287)
T ss_dssp             HHHHHHHHHSCCCEEEEECTTEEESBTTSC-----CSC-CS----SCEEC-C------CEEGGG-----------TTSCS
T ss_pred             hHHHHHHHhCCCCEEEEECCCcccCCCcce-----Eec-CC----CCceE-E------Eeeccc-----------ccCCC
Confidence            999    88999999999999998888521     000 00    00000 0      000000           11123


Q ss_pred             ccccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEE-----EeeeEEeecccc
Q psy3650         355 VSDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIG-----EVPISFVDRVYG  412 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~-----~~p~~~~~~~~~  412 (435)
                      +....|++++++|++|++++++.+. .+|+ ||.||++|+.++|+++.     +.+.....|.++
T Consensus       171 ~~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~  235 (287)
T 2fy7_A          171 YVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRD  235 (287)
T ss_dssp             STTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCCTTTCEEEECC----
T ss_pred             cCceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecCcccceeEEEecCCC
Confidence            3456788999999999999877654 3443 99999999999999999     555665555443

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=99.75  E-value=2.1e-18  Score=168.90  Aligned_cols=173  Identities=17%  Similarity=0.168  Sum_probs=120.0

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~   87 (435)
                      +|||||||||+|+|.+.+   .++++  +|.+++.++|.|++.|+|.|++.|+||||+|+|+|+.++|++|+.+++.+.+
T Consensus        99 ~EIIvVDDgS~D~t~~~~---~~~~~--~v~vi~~~~n~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~  173 (501)
T 2ffu_A           99 KEIILVDDYSNDPEDGAL---LGKIE--KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAE  173 (501)
T ss_dssp             EEEEEEECSCSCTHHHHG---GGGBT--TEEEEECSSCCHHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHH
T ss_pred             eeEEEEECCCCchHHHHH---HhcCC--CEEEEECCCCcCHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence            699999999999996432   34455  4666678899999999999999999999999999999999999999999987


Q ss_pred             CCCcEEEEeeeecCCCccCc---------ccchhh----hhchHHHHHHHH----hCCCccccccceehhhHHHHHHhhc
Q psy3650          88 ENLDVVTGTRYVGTGGVYGW---------DFKRKL----VSRGANYLTQLL----LRPGVSDLTGSFRLYKKQVLENLVS  150 (435)
Q Consensus        88 ~~~~~v~g~~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  150 (435)
                      ++.++|++............         .+....    ............    .........|++.+++|++++++|+
T Consensus       174 ~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGg  253 (501)
T 2ffu_A          174 DRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGK  253 (501)
T ss_dssp             CTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTC
T ss_pred             CCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCC
Confidence            77766655432222111100         000000    000000000000    0112234557889999999999976


Q ss_pred             ccccc-Cc-hhhHHHHHHHHhhcceeEeeeeEeeecc
Q psy3650         151 SCVSK-GY-VFQMEMVIRARQYNYTIGEVPISFVDRV  185 (435)
Q Consensus       151 ~~~~~-~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~  185 (435)
                      +.... .+ .+|.|+++|+.++|+++..+|.....+.
T Consensus       254 fde~~~~~g~ED~dl~~Rl~~~G~~i~~~p~~~v~H~  290 (501)
T 2ffu_A          254 YDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHV  290 (501)
T ss_dssp             CCTTCCSSSSHHHHHHHHHHHTTCEEEEEEEEEEEEC
T ss_pred             CCccccccCcchHHHHHHHHhcCCeEEEccCcEEEEE
Confidence            65443 33 7899999999999999999996655554

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*

Probab=99.71  E-value=5.8e-19  Score=180.49  Aligned_cols=171  Identities=12%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      .|+..++|||||||||+|+|.+++++++++++ .+|.++..++|.|.++|+|.|++.|+||||+|+|+|+.++|++|+.+
T Consensus        26 ~Qt~~~~EIIVVDDgStD~t~~il~~~~~~~~-~~i~~i~~~~n~G~~~arN~gi~~A~gdyI~flD~Dd~~~p~~l~~l  104 (729)
T 3l7i_A           26 QQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDELASYAITFY  104 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hCCCCCeEEEEEECCCCCcHHHHHHHHHHhCC-CCEEEEECCCCCCHHHHHHHHHHhccCCEEEEECCCCCCChhHHHHH
Confidence            45555699999999999999999999987743 25777777889999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhh-ccccccCchhh
Q psy3650          82 IKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLV-SSCVSKGYVFQ  160 (435)
Q Consensus        82 ~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d  160 (435)
                      ++.+.  +.+++++..........................  ...........++..++++++++++| ++.....+.+|
T Consensus       105 ~~~l~--~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~rr~~l~~~gl~fde~~~~~ED  180 (729)
T 3l7i_A          105 LEKFN--NTDGLIAPIHSFTTQRPQFVDLDRVRVEYFNAK--ENINSFLRKQSACNIIFRTAIVRAHHIRFNENLNTYVD  180 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHhc--CCCEEEEeeEEeecCCCccccccceeeeeecch--hhHHHHhhccchhheeeeHHHHHHcCCCcCCCCCcccC
Confidence            99996  667776654322221110000000000000000  00001111223445799999999987 45544457889


Q ss_pred             HHHHHHHHhhcceeEee
Q psy3650         161 MEMVIRARQYNYTIGEV  177 (435)
Q Consensus       161 ~~l~~r~~~~g~~~~~~  177 (435)
                      +++++|+...|.++..+
T Consensus       181 ~d~~~rl~~~g~~i~~~  197 (729)
T 3l7i_A          181 WSFVLEYMKYVNKFVRI  197 (729)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHhcCCEEEe
Confidence            99999999999988777

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=99.70  E-value=6.4e-17  Score=161.48  Aligned_cols=177  Identities=15%  Similarity=0.107  Sum_probs=119.2

Q ss_pred             CCeEEEEEeCCCCcC--hHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc----CCEEEEEcCCCCCCCCcHH
Q psy3650           6 YPYEIIVIDDGSPDG--TLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT----GNFIIIMDADLSHHPKFIP   79 (435)
Q Consensus         6 ~~~EiivvDd~S~d~--t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~~~~l~   79 (435)
                      .++|||||||||+|+  +..+.+......+  +|.++..+ |.|.++++|.|++.|.    +|||+|||+|+.++|++|+
T Consensus       211 ~~~EIIVVDNgStD~s~~~~~~e~~~~~~~--~I~vI~~~-N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~  287 (657)
T 4fix_A          211 VIGAVIVPDQGERKVRDHPDFPAAAARLGS--RLSIHDQP-NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSIL  287 (657)
T ss_dssp             TEEEEEEEECSSSCGGGSTTHHHHHHHHGG--GEEEEECC-CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHH
T ss_pred             CCCEEEEEECcCCCccchHHHHHHHHhcCC--CEEEEECC-CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHH
Confidence            357999999999984  3333333333334  56666666 9999999999999995    4899999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEeeeecCCCcc------------Ccccchh--------h----hhchHHHHHHHHhCCCcccccc
Q psy3650          80 EMIKLQQQENLDVVTGTRYVGTGGVY------------GWDFKRK--------L----VSRGANYLTQLLLRPGVSDLTG  135 (435)
Q Consensus        80 ~~~~~~~~~~~~~v~g~~~~~~~~~~------------~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~~~~  135 (435)
                      .+++.++..+...++|+.........            ...+...        +    .....................+
T Consensus       288 ~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g  367 (657)
T 4fix_A          288 RVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDFAEYPLNDNNSRSKLLHRRIDVDYNGW  367 (657)
T ss_dssp             HHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCSCEETTTSCSSCSSHHHHGGGBCCCCSBCCT
T ss_pred             HHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccccccccccccccccccccccccceeccccch
Confidence            99999977655555665433322210            0000000        0    0000000111111222334456


Q ss_pred             ceehhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeeeeEeeecc
Q psy3650         136 SFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRV  185 (435)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~~~~r~  185 (435)
                      .+.++++++++++|++.....+.+|.|+++|+.++|+++..+|-....+.
T Consensus       368 ~~~lirr~v~~~vGgfd~~F~~~ED~Dl~lR~~~~G~ki~~~p~a~V~H~  417 (657)
T 4fix_A          368 WTCMIPRQVAEELGQPLPLFIKWDDADYGLRAAEHGYPTVTLPGAAIWHM  417 (657)
T ss_dssp             TEEEEEHHHHHHHCSCCSCSSSSHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred             hHhHhhHHHHHHhCCChhHhccCcHHHHHHHHHHcCCeEEEECCEEEEEc
Confidence            67899999999998766555667899999999999999999888777664

>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*

Probab=99.68  E-value=6.9e-16  Score=136.53  Aligned_cols=173  Identities=14%  Similarity=0.103  Sum_probs=118.3

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcch---HHHHHHHHHH-hCCceEEEecCCCCCC--
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGT---LDAAKQLQSI-YGSEKIVLKPRKKKLG--  272 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t---~~~~~~~~~~-~~~~~i~~~~~~~n~g--  272 (435)
                      .+++|||||+||++.   ++++++   +.|.+.++|||+|||||+|.+   .++++++.+. ..  ++.+++ ++|.|  
T Consensus        52 ~~klSIVVPvYNEe~---~lLesV---l~qi~~d~eIIlVdDGS~D~s~~e~dil~~~~~~~~~--ri~viH-Qkn~gls  122 (391)
T 2wvl_A           52 LEQTAIVVPTRNERL---KLLEGV---LSGIPHEALILVASNSSPDRFQMERDLLEEFAHLTER--PALIFH-QKDPALA  122 (391)
T ss_dssp             HTTEEEEEEESSCCH---HHHHHH---HHTSCTTSEEEEEECCCHHHHHHHHHHHHHHHHHTTC--CEEEEE-TTCHHHH
T ss_pred             HhceEEEEeccCcHH---HHHHHH---HhcCCCCceEEEEECCCCCChHhHHHHHHHHHhhccc--ceEEEe-ccChHHH
Confidence            468999999999996   455555   457778999999999999999   5688888764 33  455553 33444  


Q ss_pred             ---------------------HHHHHHHHHhhc---cCCEEEEEeCCCCCCCccHHHHHHH--H---hcCCCceE-Eeee
Q psy3650         273 ---------------------LGTAYMHGLKYA---TGNFIIIMDADLSHHPKFIPEMIKL--Q---QQENLDVV-TGTR  322 (435)
Q Consensus       273 ---------------------~~~a~n~g~~~a---~~d~v~~~d~D~~~~~~~l~~~~~~--~---~~~~~~~v-~~~~  322 (435)
                                           ||.|+..|+..|   .++||.|+|+|+.++.+..+-+...  .   ...++++| ++.|
T Consensus       123 ~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyvk~yaag~~~a~s~~~MVRI~wR  202 (391)
T 2wvl_A          123 EALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYVRAYAAGFLMAKTPFAMVRILWR  202 (391)
T ss_dssp             HHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHHHHHHHHHHHHCCSSEEEEEEECC
T ss_pred             HHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHHHHHHHHHhcccCCCcceEEEecc
Confidence                                 455555688887   6999999999999966544444332  2   23678888 8888


Q ss_pred             EECCC------ceeccchhHHHHHHHHHHHHHHhcCCCcccc---ccceeeecHHHHHHhhhcccCcccc
Q psy3650         323 YVGTG------GVYGWDFKRKLVSRGANYLTQLLLRPGVSDL---TGSFRLYKKQVLENLVSSCVSKGYV  383 (435)
Q Consensus       323 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~  383 (435)
                      ..+.-      ....|+..++..+++++.+.+..++......   ..|==+++-++.+.+   .+..+|.
T Consensus       203 ~kPK~~~~~~l~f~k~Grvs~itNr~lN~Lis~~~g~et~ii~TgNAGEHAmt~~LA~~l---~~~tGya  269 (391)
T 2wvl_A          203 YKPKLTEDEGVVFRRYGRVSERNNRALNQLIGGVSGFETDVVKTANAGEHAMSLGLALRL---PLASGYA  269 (391)
T ss_dssp             CCC------CCHHHHTHHHHHHHHHHHHHHHHHHHSSCCCCCCCSSCSSEEEEHHHHTTS---CEESSTT
T ss_pred             cCcccccCCceeEeecCccchhhHHHHHHHHHHhhCcccceEeccCchhhhhhHHHHHhc---Ccccccc
Confidence            76541      2345778889999999999998877653221   112235666655554   3445554

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=99.62  E-value=1.4e-15  Score=156.03  Aligned_cols=175  Identities=14%  Similarity=0.138  Sum_probs=117.1

Q ss_pred             CCCCC---eEEEEEeCCCCcChH---------------HHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEE
Q psy3650           3 EGNYP---YEIIVIDDGSPDGTL---------------DAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI   64 (435)
Q Consensus         3 ~~~~~---~EiivvDd~S~d~t~---------------~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i   64 (435)
                      +++||   +|||||||||+|+|.               +.+++++++.+ .++.. ..+.+.|+++++|.|++.|+||||
T Consensus       165 ~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~-v~~i~-~~~~~~GKa~alN~gl~~a~gd~I  242 (802)
T 4hg6_A          165 NMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELG-VVYST-RERNEHAKAGNMSAALERLKGELV  242 (802)
T ss_dssp             TSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHT-CEEEE-CSSCCSHHHHHHHHHHHHCCCSEE
T ss_pred             hccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcC-cEEEE-ecCCCCcchHHHHHHHHhcCCCEE
Confidence            34555   899999999999993               34555555443 23322 234447999999999999999999


Q ss_pred             EEEcCCCCCCCCcHHHHHHHHh-cCCCcEEEEeeeecCCCccCc--ccchhhh---hchHHHHHHHHhCCCcccccccee
Q psy3650          65 IIMDADLSHHPKFIPEMIKLQQ-QENLDVVTGTRYVGTGGVYGW--DFKRKLV---SRGANYLTQLLLRPGVSDLTGSFR  138 (435)
Q Consensus        65 ~~lD~D~~~~~~~l~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  138 (435)
                      +++|+|+.++|++++.+++.++ +++.++|.|............  .......   ....................|++.
T Consensus       243 l~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  322 (802)
T 4hg6_A          243 VVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAA  322 (802)
T ss_dssp             EECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSE
T ss_pred             EEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccch
Confidence            9999999999999999999995 467788888654443321000  0000000   001111111111112223456678


Q ss_pred             hhhHHHHHHhhccccccCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650         139 LYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~~~~~~~~~  180 (435)
                      ++|+++++++|+... ..+.+|.+++.|+.+.|+++..+|..
T Consensus       323 ~~Rr~al~~vGgf~~-~~~~ED~~l~~rl~~~G~ri~~~~~~  363 (802)
T 4hg6_A          323 VLRRRALDEAGGFAG-ETITEDAETALEIHSRGWKSLYIDRA  363 (802)
T ss_dssp             EEEHHHHHHHTTCCC-SSSSHHHHHHHHHHTTTCCEEECCCC
T ss_pred             hhhHHHHHHcCCcCC-CCcchHHHHHHHHHHcCCeEEEecCC
Confidence            999999999976553 34578999999999999998777644

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*

Probab=99.48  E-value=2.6e-13  Score=124.20  Aligned_cols=164  Identities=16%  Similarity=0.174  Sum_probs=109.1

Q ss_pred             CCCeEEEEEeCCCCcCh------HHHHHHHHHHhCCceEEEccCC---------------------CCCCHHHHHHHHHh
Q psy3650           5 NYPYEIIVIDDGSPDGT------LDAAKQLQSIYGSEKIVLKPRK---------------------KKLGLGTAYMHGLK   57 (435)
Q Consensus         5 ~~~~EiivvDd~S~d~t------~~i~~~~~~~~~~~~i~~~~~~---------------------~n~g~~~a~n~gl~   57 (435)
                      .+.+|||||||||+|+|      .++++++++..+...+++....                     .+.|++.|+.+|+.
T Consensus        75 ~~~~eIIvVDDgSrD~tD~~~~~~~~l~~~~~~~~~~~~Vl~~~~p~v~~~~~~~g~~~il~~~~~~r~GKG~Am~aGl~  154 (394)
T 2zu9_A           75 PHKCPIIIVSNSKREGPNRYKLEVDLIRHFYNLTHSKIIMIHQKDPGLAKAFKEVGYTDILDENGMIRSGKGEGMLVGLL  154 (394)
T ss_dssp             CTTSCEEEEECCCCSSSCHHHHHHHHHHHHHHHHCCCEEEEETTCHHHHHHHHHHTCCTTBCTTSSBCCSHHHHHHHHHH
T ss_pred             CCCcEEEEEECcCcccccchhhHHHHHHHHhhccccceEEEecCCcchhHHhhhccccccccccccccCChHHHHHHHHH
Confidence            45689999999998888      7888888876555444443222                     12499999999999


Q ss_pred             hc---cCCEEEEEcCCCCCCCCcHHHHHHHHh------cCCCcEE-EEeeeecCCCc-----cCcccchhhhhchHHHHH
Q psy3650          58 YA---TGNFIIIMDADLSHHPKFIPEMIKLQQ------QENLDVV-TGTRYVGTGGV-----YGWDFKRKLVSRGANYLT  122 (435)
Q Consensus        58 ~a---~gd~i~~lD~D~~~~~~~l~~~~~~~~------~~~~~~v-~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  122 (435)
                      .|   +||+|+++|+|. ..|..+..+++.+.      +.++++| .+.+....-..     ..+.....+.++..+.+.
T Consensus       155 ~A~~~~gd~Vv~~DaDl-~iP~~v~~~~kgy~aG~~~a~~~~dmVR~~~r~~~~~~~~rl~~~~~GRv~rl~~r~Ln~L~  233 (394)
T 2zu9_A          155 LAKAIGAEYVGFVDADN-YIPGAVNEYVKDYAAGFLMSESEYTMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLV  233 (394)
T ss_dssp             HHHHTTCSEEEECCSCB-SCHHHHHHHHHHHHHHHHHCCSSSEEEEEECC-----------------HHHHHHHHHHHHH
T ss_pred             HHhhCCCCEEEEEeCCC-CCHHHHHHHHHHhhhcccccccccceeeeccccccccccccccccCCCceehhHHHHHHHHH
Confidence            99   899999999999 66777777776653      2467887 55543211000     111222344444444455


Q ss_pred             HHHhCCCc--c-ccccceehhhHHHHHHhhccccccCchhhHHHHHHHHhhcc
Q psy3650         123 QLLLRPGV--S-DLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNY  172 (435)
Q Consensus       123 ~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~r~~~~g~  172 (435)
                      ..+.+...  . ...+|+++++++++..+.   +..+|+.+.++...+.+.+.
T Consensus       234 ~~l~g~~~d~~~tplsGe~A~rr~ll~~L~---~~~gyGvE~~lLv~~~r~~~  283 (394)
T 2zu9_A          234 SEHTAFETTIMVTGNAGEHAMTMKLAEILP---FSTGYSIEPYEIVYILERFG  283 (394)
T ss_dssp             HHHHSSCCCCCCCTTCSSEEEEHHHHTTCC---EESGGGHHHHHHHHHHHHHS
T ss_pred             HHhcCccccCcCCCCchhhHhhHHHHhcCC---CCCCCCCCHHHHHHHHHhhC
Confidence            55545432  1 134589999999999873   34699999999999887744

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*

Probab=99.43  E-value=2.7e-13  Score=119.86  Aligned_cols=138  Identities=12%  Similarity=0.079  Sum_probs=87.1

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhc
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~   87 (435)
                      +|||||||+|+|.                         .|.+.|+|.|++.|+|||++|+|+|+.++|+||+.+++.+++
T Consensus        47 ~EiIVVDn~s~d~-------------------------~g~a~a~N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~  101 (249)
T 2nxv_A           47 AEFLAADNREGNQ-------------------------FHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEA  101 (249)
T ss_dssp             EEEEEEECTTSCS-------------------------CCTTTHHHHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEECCCCCc-------------------------ccHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence            8999999988762                         367899999999999999999999999999999999999976


Q ss_pred             -----CCCcEEEEeeeecCC--CccC-c-ccchhhhh---chHHHHHHHHhCCCccccccceehhhHHHHHHhhccc-cc
Q psy3650          88 -----ENLDVVTGTRYVGTG--GVYG-W-DFKRKLVS---RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC-VS  154 (435)
Q Consensus        88 -----~~~~~v~g~~~~~~~--~~~~-~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  154 (435)
                           ++.. ++|.......  +... . ........   ....     ..........+++.++++++   .+++. ..
T Consensus       102 ~~~~~~~vg-~vg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~g~~~~~rr~~---~~gFDe~~  172 (249)
T 2nxv_A          102 LEEADPKWL-VAGVAGSPWRPLNHSVTAQALHISDVFGNDRRRG-----NVPCRVESLDECFLLMRRLK---PVLNSYDM  172 (249)
T ss_dssp             HHHHCTTEE-EEESEEEESSCSCTTSCCCEEEEEETTEEEEEES-----CSSEEEEEECTTEEEEETTB---CCCCCSSC
T ss_pred             cccCCCCee-EEeecccccCCCCceeeecccccCCccccccccC-----CCceEcCeeeeEeeEEEHhh---hCCCCCCC
Confidence                 3333 3443322111  1000 0 00000000   0000     00111222345677889988   33333 22


Q ss_pred             cCc-hhhHHHHHHHHhhcceeEeeee
Q psy3650         155 KGY-VFQMEMVIRARQYNYTIGEVPI  179 (435)
Q Consensus       155 ~~~-~~d~~l~~r~~~~g~~~~~~~~  179 (435)
                      .+| .+|.|+++|+++.|+++...|.
T Consensus       173 ~~~~~~D~Dl~~R~~~~G~~~~~~p~  198 (249)
T 2nxv_A          173 QGFHYYGADLCLQAEFLGGRAYAIDF  198 (249)
T ss_dssp             CSSSSHHHHHHHHHHHTTCEEEECCC
T ss_pred             CCcceehhHHHHHHHHcCCeEEEecc
Confidence            233 3699999999999999877664

>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*

Probab=99.36  E-value=1.1e-12  Score=116.34  Aligned_cols=165  Identities=16%  Similarity=0.087  Sum_probs=109.5

Q ss_pred             CCCCCCeEEEEEeCCCCcCh---HHHHHHHHHH-hCCceEEEccCCCCCCHHHHHH-----------------------H
Q psy3650           2 DEGNYPYEIIVIDDGSPDGT---LDAAKQLQSI-YGSEKIVLKPRKKKLGLGTAYM-----------------------H   54 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t---~~i~~~~~~~-~~~~~i~~~~~~~n~g~~~a~n-----------------------~   54 (435)
                      +|...++|||||||||+|+|   .+++++|++. +.+  +.++ ++.|.|.+.|+|                       .
T Consensus        74 ~qi~~d~eIIlVdDGS~D~s~~e~dil~~~~~~~~~r--i~vi-HQkn~gls~Ar~~~G~~~il~~~~~vR~GKGegmi~  150 (391)
T 2wvl_A           74 SGIPHEALILVASNSSPDRFQMERDLLEEFAHLTERP--ALIF-HQKDPALAEALRAGGYPHPIGEDGLVRSGKAEGMIL  150 (391)
T ss_dssp             HTSCTTSEEEEEECCCHHHHHHHHHHHHHHHHHTTCC--EEEE-ETTCHHHHHHHHHTTCCTTBCTTSSBCCSHHHHHHH
T ss_pred             hcCCCCceEEEEECCCCCChHhHHHHHHHHHhhcccc--eEEE-eccChHHHHHHHhcCcchhhcccccccccchHHHHH
Confidence            45566799999999999999   5788899874 444  4444 466666666665                       4


Q ss_pred             HHhhc---cCCEEEEEcCCCCCCCCcHHHHH---HHH--hcCCCcEE-EEeeeecCC------CccCcccchhhhhchHH
Q psy3650          55 GLKYA---TGNFIIIMDADLSHHPKFIPEMI---KLQ--QQENLDVV-TGTRYVGTG------GVYGWDFKRKLVSRGAN  119 (435)
Q Consensus        55 gl~~a---~gd~i~~lD~D~~~~~~~l~~~~---~~~--~~~~~~~v-~g~~~~~~~------~~~~~~~~~~~~~~~~~  119 (435)
                      |+..|   .|+||.|+|+|+.++....+.+.   ..+  .+.++++| +++++...-      ....|...+++.++.++
T Consensus       151 Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyvk~yaag~~~a~s~~~MVRI~wR~kPK~~~~~~l~f~k~Grvs~itNr~lN  230 (391)
T 2wvl_A          151 ALVFAALSGRRYVGFIDADNYFPGAVWEYVRAYAAGFLMAKTPFAMVRILWRYKPKLTEDEGVVFRRYGRVSERNNRALN  230 (391)
T ss_dssp             HHHHHHHTTCSEEEECCSCBSCHHHHHHHHHHHHHHHHHCCSSEEEEEEECCCCC------CCHHHHTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEcCcCCCccCHHHHHHHHHHHhcccCCCcceEEEecccCcccccCCceeEeecCccchhhHHHHH
Confidence            77887   69999999999999665444333   222  23678899 999875532      12345566677777777


Q ss_pred             HHHHHHhCCC--c-cccccceehhhHHHHHHhhccccccCchhh-HHHHHHHHhhcc
Q psy3650         120 YLTQLLLRPG--V-SDLTGSFRLYKKQVLENLVSSCVSKGYVFQ-MEMVIRARQYNY  172 (435)
Q Consensus       120 ~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~l~~r~~~~g~  172 (435)
                      .+.+...+..  + .....|=-+++-++...+   .+..+|..+ +++....-+.|.
T Consensus       231 ~Lis~~~g~et~ii~TgNAGEHAmt~~LA~~l---~~~tGyaiEp~~~v~lle~fg~  284 (391)
T 2wvl_A          231 QLIGGVSGFETDVVKTANAGEHAMSLGLALRL---PLASGYAVEPQELVSLLELYGG  284 (391)
T ss_dssp             HHHHHHHSSCCCCCCCSSCSSEEEEHHHHTTS---CEESSTTHHHHHHHHHHHHHSS
T ss_pred             HHHHHhhCcccceEeccCchhhhhhHHHHHhc---CcccccccCchHHHHHHHHhcc
Confidence            7776665554  2 222334457888888777   445666554 666655555444

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=99.03  E-value=3.3e-10  Score=101.36  Aligned_cols=104  Identities=12%  Similarity=-0.044  Sum_probs=68.8

Q ss_pred             CHHHHHHHHH----hhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHH
Q psy3650          47 GLGTAYMHGL----KYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLT  122 (435)
Q Consensus        47 g~~~a~n~gl----~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (435)
                      +++.++|.|+    +.|+||||+|+|+|+++.|+++.        ..+    +..    ..... ......         
T Consensus       112 ~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~--------~~~----~~~----p~~~~-~~~~~~---------  165 (287)
T 2fy7_A          112 NRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNA--------YRC----FSQ----PRHIS-VAMDKF---------  165 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSC--------CSC----CSS----CEECC-CEEGGG---------
T ss_pred             chhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCcce--------Eec----CCC----CceEE-Eeeccc---------
Confidence            6788999999    89999999999999999998621        000    000    00000 000000         


Q ss_pred             HHHhCCCccccccceehhhHHHHHHhhcccc-ccCch-hhHHHHHHHHhhcceeEeee
Q psy3650         123 QLLLRPGVSDLTGSFRLYKKQVLENLVSSCV-SKGYV-FQMEMVIRARQYNYTIGEVP  178 (435)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~d~~l~~r~~~~g~~~~~~~  178 (435)
                        ..........|++.+++|++++++|++.. ..+|+ +|.|++.|+.+.|+++...+
T Consensus       166 --~~~~~~~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~~  221 (287)
T 2fy7_A          166 --GFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPN  221 (287)
T ss_dssp             --TTSCSSTTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCCC
T ss_pred             --ccCCCcCceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEecC
Confidence              01112234457789999999999976654 34453 89999999999999887443

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*

Probab=98.78  E-value=1.9e-08  Score=91.65  Aligned_cols=108  Identities=12%  Similarity=0.081  Sum_probs=79.0

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH-----hCCceEEEecCCCCCCHH
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI-----YGSEKIVLKPRKKKLGLG  274 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-----~~~~~i~~~~~~~n~g~~  274 (435)
                      +.++|+|++||+.+ ++++|++|.++- ......+|||.|||+.+++.++++++...     ++.+..+ ...++|.|..
T Consensus         2 ~~~pViI~~yNRp~-l~~~L~sL~~~~-p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~-~~~~~N~g~~   78 (343)
T 1fo8_A            2 AVIPILVIACDRST-VRRCLDKLLHYR-PSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNI-AVQPDHRKFQ   78 (343)
T ss_dssp             CCCCEEEEESSCTT-HHHHHHHHHHHC-SCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCC-CCCTTCGGGH
T ss_pred             CcccEEEEECCcHH-HHHHHHHHHhcC-CCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCcccc-ccchhhcCcc
Confidence            35789999999998 999999998742 12345799999999999999988876421     0111110 1135566643


Q ss_pred             ----------HHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHH
Q psy3650         275 ----------TAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQ  310 (435)
Q Consensus       275 ----------~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~  310 (435)
                                .+++.++..+++++++++|+|..++|+++.-+...+
T Consensus        79 ~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l  124 (343)
T 1fo8_A           79 GYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATY  124 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHH
T ss_pred             cchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHH
Confidence                      567777777789999999999999999996666554

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=98.44  E-value=1.6e-06  Score=74.76  Aligned_cols=151  Identities=15%  Similarity=0.226  Sum_probs=108.0

Q ss_pred             CCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         198 VKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       198 ~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ...+++||||.+|+++.|..+|..+...|......+.|+||+-.                         ....+..|..+
T Consensus        49 ~~~kvAIIIPyRdR~~hL~~fl~~lhp~L~rQ~l~y~I~VieQ~-------------------------~~~~FNRa~Ll  103 (287)
T 3lw6_A           49 SVHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVLNQV-------------------------DRFRFNRASLI  103 (287)
T ss_dssp             CCCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEC-------------------------SSSCCCHHHHH
T ss_pred             CcceEEEEEEeCCHHHHHHHHHHHHHHHHHHcCCceEEEEEecC-------------------------CCCccchhhee
Confidence            35789999999999999999999999888877778899888632                         12356789999


Q ss_pred             HHHHhhcc--CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceE--EeeeEECCCceeccchhHHHHHHHHHHHHHHhcCC
Q psy3650         278 MHGLKYAT--GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV--TGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRP  353 (435)
Q Consensus       278 n~g~~~a~--~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
                      |.|+..|.  .|+++|=|.|.....+..          .+..-  ..++.....                    ......
T Consensus       104 NvGf~ea~~~~d~~ifHDVDLlP~dd~n----------~Y~c~~~~~P~Hls~~--------------------~~~~~~  153 (287)
T 3lw6_A          104 NVGFQFASDVYDYIAMHDVDLLPLNDNL----------LYEYPSSLGPLHIAGP--------------------KLHPKY  153 (287)
T ss_dssp             HHHHHHSCTTCCEEEEECTTEEECCTTS----------CCCCCCTTCCEESSCT--------------------TTCSSC
T ss_pred             cccHHHHhccCCEEEEecccccccCCCc----------cccCCCCCCceEEeec--------------------cccCCC
Confidence            99999985  499999999876542211          01000  011211100                    011122


Q ss_pred             CccccccceeeecHHHHHHhhhcccC-cccc-hhhHHHHHHHHCCCcEEEee
Q psy3650         354 GVSDLTGSFRLYKKQVLENLVSSCVS-KGYV-FQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       354 ~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~-~D~el~lr~~~~G~~i~~~p  403 (435)
                      ++....||.++++++.+.+++|+.+. .+++ ||.|+..|+..+|+++...+
T Consensus       154 ~Y~~~~GGv~a~~re~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~  205 (287)
T 3lw6_A          154 HYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQ  205 (287)
T ss_dssp             CCTTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCS
T ss_pred             CcCCccccEEeccHHHHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCC
Confidence            34456788899999999999876544 4554 99999999999999998876

>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}

Probab=98.41  E-value=5.5e-08  Score=78.60  Aligned_cols=115  Identities=16%  Similarity=0.202  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhh----ccCCEEEEEeCC---CCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHH
Q psy3650         273 LGTAYMHGLKY----ATGNFIIIMDAD---LSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANY  345 (435)
Q Consensus       273 ~~~a~n~g~~~----a~~d~v~~~d~D---~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (435)
                      ...|+|..+..    ...|+++++|+|   ..++|+.+.+++    +.+.|+|+|++......  +.....       +.
T Consensus        37 I~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl----~~g~DVV~GsYp~K~~~--~~s~~a-------~~  103 (203)
T 2c0n_A           37 VAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKF----NEGYDVVCGYYYLKTLR--GYSVYR-------KD  103 (203)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHH----HHTCSEEEEECBCTTSS--SBSEES-------SS
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHH----hCCCCEEEEEeeccCCC--ccchHH-------HH
Confidence            44555555554    356999999999   999999999999    34789999999776522  111110       11


Q ss_pred             HHHHhcCCCccccccceeeecHHHHHHhhhcc--------cCcccchhhHHHHHHHHCCCcEE
Q psy3650         346 LTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC--------VSKGYVFQMEMVIRARQYNYTIG  400 (435)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--------~~~~~~~D~el~lr~~~~G~~i~  400 (435)
                      +.....+.++.++++||++++|++++.+..-.        .....+||..+|..+...|+-+.
T Consensus       104 y~~~i~~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~k~~~~~~~  166 (203)
T 2c0n_A          104 WEKEIFDGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHKPRTYALS  166 (203)
T ss_dssp             BCSSCCCEECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHHCCCEEEEE
T ss_pred             HHHhccCceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEecccccccccc
Confidence            11223344788999999999999999983211        12455689999998888888773

>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}

Probab=98.22  E-value=3.9e-07  Score=73.70  Aligned_cols=131  Identities=16%  Similarity=0.206  Sum_probs=87.2

Q ss_pred             CCceEEEccCCCCCCHHHHHHHHHhh----ccCCEEEEEcCC---CCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCcc
Q psy3650          33 GSEKIVLKPRKKKLGLGTAYMHGLKY----ATGNFIIIMDAD---LSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY  105 (435)
Q Consensus        33 ~~~~i~~~~~~~n~g~~~a~n~gl~~----a~gd~i~~lD~D---~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~  105 (435)
                      +.+.+.+...  ..=...|||..+..    ...|+++|+|+|   ..++|+.+.++++    .++|+|.|++.....+  
T Consensus        24 ~gi~~~l~~~--~SlI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl~----~g~DVV~GsYp~K~~~--   95 (203)
T 2c0n_A           24 NDIEYVILSR--RNHVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKFN----EGYDVVCGYYYLKTLR--   95 (203)
T ss_dssp             TTCCEEEECC--CSCHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHHH----HTCSEEEEECBCTTSS--
T ss_pred             CCCeEEEEcc--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHHh----CCCCEEEEEeeccCCC--
Confidence            3455665443  33477888988766    345999999999   9999999999994    6899999998776533  


Q ss_pred             CcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcccc--------ccCchhhHHHHHHHHhhcceeEee
Q psy3650         106 GWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCV--------SKGYVFQMEMVIRARQYNYTIGEV  177 (435)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~l~~r~~~~g~~~~~~  177 (435)
                      +......       .+.....+.++.+.++||++++|++++.+-...+        ....++|..++..+...|+-+..+
T Consensus        96 ~~s~~a~-------~y~~~i~~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~k~~~~~~~~~  168 (203)
T 2c0n_A           96 GYSVYRK-------DWEKEIFDGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHKPRTYALSSL  168 (203)
T ss_dssp             SBSEESS-------SBCSSCCCEECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHHCCCEEEEEEE
T ss_pred             ccchHHH-------HHHHhccCceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEecccccccccccc
Confidence            1111111       0001112336788899999999999999833322        234456777887777778876544


Q ss_pred             e
Q psy3650         178 P  178 (435)
Q Consensus       178 ~  178 (435)
                      .
T Consensus       169 ~  169 (203)
T 2c0n_A          169 K  169 (203)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*

Probab=97.73  E-value=2.1e-05  Score=71.63  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEcc---------CCCCCCHH----------HHHHHHHhhccCCEEEEE
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKP---------RKKKLGLG----------TAYMHGLKYATGNFIIIM   67 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~---------~~~n~g~~----------~a~n~gl~~a~gd~i~~l   67 (435)
                      ++||||.||||.++|.++++++..+     |..+.         .+.|.|..          .++|.++..+.+++++++
T Consensus        32 ~~~iivsdDgs~~~~~~vi~~~~~~-----I~~~~~~d~~~~~~~~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiL  106 (343)
T 1fo8_A           32 LFPIIVSQDCGHEETAQVIASYGSA-----VTHIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVV  106 (343)
T ss_dssp             TSCEEEEECTTCHHHHHHHHTTGGG-----SEEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHcCCc-----eEEEEcCCccccccchhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEE
Confidence            5899999999999999999887531     22211         34565643          567777777789999999


Q ss_pred             cCCCCCCCCcHHHHHHHHh
Q psy3650          68 DADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus        68 D~D~~~~~~~l~~~~~~~~   86 (435)
                      |+|..+.|++++-+.+.+.
T Consensus       107 EDDl~~spdF~~y~~~~l~  125 (343)
T 1fo8_A          107 EDDLEVAPDFFEYFQATYP  125 (343)
T ss_dssp             ETTEEECTTHHHHHHHHHH
T ss_pred             cCCCeECHHHHHHHHHHHH
Confidence            9999999999977666663

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=96.91  E-value=0.0024  Score=56.08  Aligned_cols=194  Identities=13%  Similarity=0.124  Sum_probs=100.6

Q ss_pred             CcceEEEEeccCCCCChH-H---------HHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCC
Q psy3650         199 KNKYTVLLPTYNEKENLP-I---------IVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK  268 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~-~---------~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~  268 (435)
                      .+++.+|||+.....++. +         ++....+.+.+.. .-+|+|+-+  .+.    ++++...+ +.++......
T Consensus        16 ~M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i~~IvV~t~--~~~----i~~~~~~~-g~~v~~~~~~   87 (264)
T 3k8d_A           16 HMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-AERIIVATD--HED----VARAVEAA-GGEVCMTRAD   87 (264)
T ss_dssp             --CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-CSEEEEEES--CHH----HHHHHHHT-TCEEEECCTT
T ss_pred             CCceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-CCEEEEECC--HHH----HHHHHHHc-CCEEEEecCC
Confidence            346788888877776665 1         2222222233222 237777764  222    33333333 3455544334


Q ss_pred             CCCCHHHHHHHHHhhc---cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECC----------------Cc
Q psy3650         269 KKLGLGTAYMHGLKYA---TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGT----------------GG  328 (435)
Q Consensus       269 ~n~g~~~a~n~g~~~a---~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~----------------~~  328 (435)
                      ...|.+. +..+++..   ..|+++++++|.- ++++.+.++++.+.+.+.++++......+                ++
T Consensus        88 ~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g  166 (264)
T 3k8d_A           88 HQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEG  166 (264)
T ss_dssp             CCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTS
T ss_pred             CCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCC
Confidence            4455554 55555544   5699999999994 88999999999987766666554332211                11


Q ss_pred             eeccchhHHHHHHHHHHHHHHh-cCCCccccccceeeecHHHHHHhhhcccCcccc--hhhHHHHHHHHCCCcEEEeee
Q psy3650         329 VYGWDFKRKLVSRGANYLTQLL-LRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYV--FQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ..-+ +.++-............ ..........|..+|++++++.+..... ..+.  +..| .+|+.++|++|..+..
T Consensus       167 ~~l~-fsr~~ip~~r~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~~~~-~~lE~~e~le-qlr~le~G~~I~~~~~  242 (264)
T 3k8d_A          167 YALY-FSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQP-SPLEHIEMLE-QLRVLWYGEKIHVAVA  242 (264)
T ss_dssp             BEEE-EESSCCSCCHHHHHHCSSCCCSCCEEECSEEEEEHHHHHHHHHSCC-CHHHHHHTCT-THHHHHTTCCEEEEEC
T ss_pred             eEEE-EecCCCCCCCccccccccccCCcceEEEEEEEECHHHHHHHHhCCC-ChhhhHHHHH-HHHHHHCCCceEEEEe
Confidence            0000 00000000000000000 0011234466789999999999854221 1121  2222 2678899999987643

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=96.72  E-value=0.0034  Score=54.83  Aligned_cols=160  Identities=14%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             EEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCCEEEEEeCCCC-CCCccHHHHHHH
Q psy3650         234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADLS-HHPKFIPEMIKL  309 (435)
Q Consensus       234 eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d~v~~~d~D~~-~~~~~l~~~~~~  309 (435)
                      +|+|+-+  .+.    ++++...+ +.+++....+...|.+. +..+++..   ..|.++++++|.- ++++.+.++++.
T Consensus        51 ~VvVvt~--~~~----i~~~~~~~-g~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~  122 (256)
T 3tqd_A           51 EVVIATD--DKR----IRQVAEDF-GAVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAED  122 (256)
T ss_dssp             EEEEEES--CHH----HHHHHHHT-TCEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHH
T ss_pred             EEEEECC--HHH----HHHHHHHc-CCeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHH
Confidence            7777754  222    33333333 34555543344456554 56677765   4699999999994 889999999998


Q ss_pred             HhcC-CCceEEeeeEEC----------------CCceeccchhHHHHHHHHHHH-HHHhc-CCCccccccceeeecHHHH
Q psy3650         310 QQQE-NLDVVTGTRYVG----------------TGGVYGWDFKRKLVSRGANYL-TQLLL-RPGVSDLTGSFRLYKKQVL  370 (435)
Q Consensus       310 ~~~~-~~~~v~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~r~~~  370 (435)
                      +.++ +.++++......                .++.. ..+.++-........ ..... .........|..+|+++++
T Consensus       123 ~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g~~-l~fsr~pip~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l  201 (256)
T 3tqd_A          123 LDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRNYA-LYFSHAPIPWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFL  201 (256)
T ss_dssp             HHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTSBE-EEEESSCSSCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHH
T ss_pred             HHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCCEE-eEEecCCCCCCCcccccccccccCCcceEEEEEEEcCHHHH
Confidence            8753 445544332211                01100 000000000000000 00000 0011234667899999999


Q ss_pred             HHhhhcccCcccchhhHH--HHHHHHCCCcEEEeee
Q psy3650         371 ENLVSSCVSKGYVFQMEM--VIRARQYNYTIGEVPI  404 (435)
Q Consensus       371 ~~~~~~~~~~~~~~D~el--~lr~~~~G~~i~~~p~  404 (435)
                      +.+..... . ..|..|-  .+|+.++|++|.....
T Consensus       202 ~~~~~l~~-s-~lE~~e~leqlr~le~G~~i~~~~~  235 (256)
T 3tqd_A          202 EEYLSWDA-C-PAEKMEALEQLRILWHGGRIHMVVA  235 (256)
T ss_dssp             HHHHHSCC-C-HHHHHHTCTTHHHHHTTCCCEEEEC
T ss_pred             HHHHhCCC-C-cccchhhhHHHHHHHCCCeEEEEEe
Confidence            99854221 1 1222221  2678999999988765

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=95.74  E-value=0.026  Score=49.61  Aligned_cols=139  Identities=9%  Similarity=0.011  Sum_probs=79.6

Q ss_pred             ceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHH
Q psy3650         260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV  339 (435)
Q Consensus       260 ~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  339 (435)
                      +.+.+...+...|.+.++..++.....+.++++++|..+. ..+.++++.+.+.+.++++......+...  +.....-.
T Consensus        97 ~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~g~v~~d~  173 (269)
T 4ecm_A           97 VSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFS-DDIRPYVEEFTNQKEGAKVLLQSVDDPER--FGVANIQN  173 (269)
T ss_dssp             CEEEEEECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEES-SCSHHHHHHHHTSSSSEEEEEEECSCGGG--SEEEEEET
T ss_pred             ceEEEeeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCc-cCHHHHHHHHHhcCCCeEEEEEECCCCCC--ceEEEEcC
Confidence            3565555566778999999998887789999999999765 77889998887666676655443322111  10000000


Q ss_pred             HHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccC-cccchhhHHHHHHHHCCCcEEEee
Q psy3650         340 SRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVS-KGYVFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~~~D~el~lr~~~~G~~i~~~p  403 (435)
                      .+...+ .............+|+.+|++++|+.+...... .+-.+-.+++-++...| ++...+
T Consensus       174 g~v~~~-~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~ge~~l~d~l~~l~~~g-~v~~~~  236 (269)
T 4ecm_A          174 RKIIEI-EEKPKEPKSSYAVTGIYLYDSKVFSYIKELKPSARGELEITDINNWYLKRG-VLTYNE  236 (269)
T ss_dssp             TEEEEE-EESCSSCSCSEEEEEEEEECTTHHHHHTSCCBCTTSCBCHHHHHHHHHHTT-CEEEEE
T ss_pred             CEEEEE-EECCCCCCCcEEEEEEEEECHHHHHhhhhcCCCCCCeeeHHHHHHHHHHcC-CEEEEE
Confidence            000000 000001122345678889999999777322111 11122356666777777 665544

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=95.65  E-value=0.17  Score=43.88  Aligned_cols=174  Identities=9%  Similarity=0.040  Sum_probs=90.9

Q ss_pred             ChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCCEEE
Q psy3650         214 NLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFII  290 (435)
Q Consensus       214 ~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d~v~  290 (435)
                      .+..+++.+.+    .. .-+|+|+-+  .+    .++++...+ ++++.....+...|.+. ...+++..   ..|.++
T Consensus        29 li~~~l~~l~~----~~-~~~ivVv~~--~~----~i~~~~~~~-g~~v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vl   95 (252)
T 3oam_A           29 MIQWVYEQAMQ----AG-ADRVIIATD--DE----RVEQAVQAF-GGVVCMTSPNHQSGTER-LAEVVAKMAIPADHIVV   95 (252)
T ss_dssp             HHHHHHHHHHH----TT-CSEEEEEES--CH----HHHHHHHHT-TCEEEECCTTCCSHHHH-HHHHHHHTTCCTTSEEE
T ss_pred             HHHHHHHHHHh----CC-CCeEEEECC--HH----HHHHHHHHc-CCEEEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEE
Confidence            44455555443    22 237777764  12    233333333 34665544444566665 34455544   469999


Q ss_pred             EEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECC----------------CceeccchhHHHHHHHHHHHHHHhc-C
Q psy3650         291 IMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGT----------------GGVYGWDFKRKLVSRGANYLTQLLL-R  352 (435)
Q Consensus       291 ~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~  352 (435)
                      ++++|. .++++.+.++++.+.+++.++++......+                ++... .+.++-............. .
T Consensus        96 v~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g~v~-~fsr~~i~~~~~~~~~~~~~~  174 (252)
T 3oam_A           96 NVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSGYAL-YFSRATIPWDRDNFAKADKAI  174 (252)
T ss_dssp             ECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTSBEE-EEESSCSSCCHHHHHSSSCCC
T ss_pred             EEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCCeEE-EEeCCCCCCCCCccccccccc
Confidence            999999 488999999999887666666554433221                11000 0000000000000000000 0


Q ss_pred             CCccccccceeeecHHHHHHhhhcccCccc--chhhHHHHHHHHCCCcEEEee
Q psy3650         353 PGVSDLTGSFRLYKKQVLENLVSSCVSKGY--VFQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       353 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~D~el~lr~~~~G~~i~~~p  403 (435)
                      ........|..+|++++++.+..... ..+  .|..|. +|+.+.|+++..++
T Consensus       175 ~~~~~~n~GiY~~~~~~l~~~~~~~~-~~~e~~E~le~-lr~l~~G~~i~~~~  225 (252)
T 3oam_A          175 VQPLLRHIGIYAYRAGFINTYLDWQP-SQLEKIECLEQ-LRVLWHGEKIHVAV  225 (252)
T ss_dssp             CSCEEEEEEEEEEETTHHHHHHHSCC-CHHHHHHTCTT-HHHHHTTCCEEEEE
T ss_pred             cccceEEEEEEEcCHHHHHHHHcCCC-CcccccchhHH-HHHHHCCCeEEEEE
Confidence            12334577889999999999853221 111  122232 46778899998764

>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*

Probab=95.58  E-value=0.08  Score=45.58  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=65.8

Q ss_pred             CCCcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCC--CcchHHHHHHHHHHhCCceEEEecCC--CCCC
Q psy3650         197 SVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRK--KKLG  272 (435)
Q Consensus       197 ~~~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~~~~~~--~n~g  272 (435)
                      ...|.|-+|.|+|.+......+ ..+...+..- +++..|||+|+.  ++.+.++|++.     ++..+.+..+  .++-
T Consensus        18 ~~~p~IivVTPTy~R~~Q~a~L-tRLa~TL~~V-p~L~WIVVEd~~~~t~~va~lL~rs-----Gl~y~HL~~~~p~~~~   90 (281)
T 3cu0_A           18 GSHMTIYVVTPTYARLVQKAEL-VRLSQTLSLV-PRLHWLLVEDAEGPTPLVSGLLAAS-----GLLFTHLVVLTPKAQR   90 (281)
T ss_dssp             ---CEEEEEEEECCSTTHHHHH-HHHHHHHTTS-SSEEEEEEESSSSCCHHHHHHHHHH-----CSEEEEEECCCC----
T ss_pred             CCCCeEEEEeCCCCCcchhHHH-HHHHHHHhcC-CceEEEEEcCCCCCCHHHHHHHHHc-----CCceEEeccCCCcccc
Confidence            3468899999999987665543 3455555554 489999999964  45666766654     2334433322  2211


Q ss_pred             ------------HHHHHHHHHhhcc-----------------CCEEEEEeCCCCCCCccHHHH
Q psy3650         273 ------------LGTAYMHGLKYAT-----------------GNFIIIMDADLSHHPKFIPEM  306 (435)
Q Consensus       273 ------------~~~a~n~g~~~a~-----------------~d~v~~~d~D~~~~~~~l~~~  306 (435)
                                  ....+|.|++..+                 .-+|.|.|+|+.++.+.+++|
T Consensus        91 ~~~~dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdem  153 (281)
T 3cu0_A           91 LREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  153 (281)
T ss_dssp             -------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHh
Confidence                        1467999997765                 146788899999998877774

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=94.72  E-value=1.4  Score=38.10  Aligned_cols=155  Identities=13%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             EEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCCEEEEEeCCC-CCCCccHHHHHHH
Q psy3650         234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIKL  309 (435)
Q Consensus       234 eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d~v~~~d~D~-~~~~~~l~~~~~~  309 (435)
                      +|+|+-+.  +    .+.++...+ +..+.........|. .++..+++..   ..|+++++++|. .++++.|.++++.
T Consensus        44 ~vvVvt~~--~----~i~~~~~~~-g~~v~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~~  115 (253)
T 4fcu_A           44 DLCVATDD--E----RIAEICRAE-GVDVVLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAKL  115 (253)
T ss_dssp             EEEEEESC--H----HHHHHHHTT-TCCEEECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHHH
T ss_pred             EEEEECCH--H----HHHHHHHHc-CCeEEEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHHH
Confidence            77777642  2    233333332 335544333333344 4566677665   359999999999 5889999999999


Q ss_pred             HhcC-CCceEEeeeE----------------ECCCceeccchhHHHHHHHHHHHHHHhcC------CCccccccceeeec
Q psy3650         310 QQQE-NLDVVTGTRY----------------VGTGGVYGWDFKRKLVSRGANYLTQLLLR------PGVSDLTGSFRLYK  366 (435)
Q Consensus       310 ~~~~-~~~~v~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  366 (435)
                      +.+. +.++++....                ...++..-+ +.+.-..     ..+-...      ........|..+|+
T Consensus       116 ~~~~~~~~~at~~~~~~~~~~~~~p~~~kvv~d~~g~~l~-fsr~~ip-----~~r~~~~~~~~~~~~~~~~~~GiY~f~  189 (253)
T 4fcu_A          116 LVDKPNCSMSTLCEPIHALDEFQRDSIVKVVMSKQNEALY-FSRATIP-----YDRDGAKRDEPTLHTQAFRHLGLYAYR  189 (253)
T ss_dssp             HHHCTTCSEEEEEEECCCHHHHHCTTSCEEEECTTSBEEE-EESSCCS-----CCTTTSSSSSCCCCSCCEEEEEEEEEE
T ss_pred             HHhCCCCCEEEEeEEcCCHHHccCCCccEEEECCCCeEEE-ecCCCCC-----CCCCcccccccccccceeEEEEEEEeC
Confidence            8764 3444433211                111110000 0000000     0000000      11223466789999


Q ss_pred             HHHHHHhhhcccCcccchhhHH--HHHHHHCCCcEEEeee
Q psy3650         367 KQVLENLVSSCVSKGYVFQMEM--VIRARQYNYTIGEVPI  404 (435)
Q Consensus       367 r~~~~~~~~~~~~~~~~~D~el--~lr~~~~G~~i~~~p~  404 (435)
                      +++++++....  .+-.|-.|.  .+|+.++|++|..+..
T Consensus       190 ~~~l~~~~~~~--~~~le~~e~le~lr~l~~G~~I~~~~~  227 (253)
T 4fcu_A          190 VSLLQEYVTWE--MGKLEKLESLEQLRVLENGHRIAIAVA  227 (253)
T ss_dssp             HHHHHHHTTSC--CCHHHHHHTCTTHHHHHTTCCEEEEEC
T ss_pred             HHHHHHHHhCC--CCcccchhHHHHHHHHHCCCceEEEEe
Confidence            99999985321  222222222  2467789999988765

>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*

Probab=94.46  E-value=0.19  Score=42.78  Aligned_cols=102  Identities=12%  Similarity=0.062  Sum_probs=67.6

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCC--CcchHHHHHHHHHHhCCceEEEecCCC--C----
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRKK--K----  270 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~~~~~~~--n----  270 (435)
                      .|.|-+|.|+|.+......+ ..+...+... +++..|||+|+.  ++.+.++|++.     ++..+.+..+.  +    
T Consensus         2 ~p~I~vVTPTy~R~~Q~a~L-tRLa~TL~~V-p~L~WIVVEd~~~~t~~va~lL~~s-----gl~y~HL~~~~p~~~~~~   74 (253)
T 1v84_A            2 LPTIHVVTPTYSRPVQKAEL-TRMANTLLHV-PNLHWLVVEDAPRRTPLTARLLRDT-----GLNYTHLHVETPRNYKLR   74 (253)
T ss_dssp             CCEEEEEEEECCSTTHHHHH-HHHHHHHTTS-SSEEEEEEESSSSCCHHHHHHHHHH-----CCEEEEEECCCCHHHHCC
T ss_pred             CCEEEEEeCCCCccchhHHH-HHHhhhhccC-CceEEEEEeCCCCCCHHHHHHHHHc-----CCceEEeecCCCcccccc
Confidence            47789999999987655543 3444445443 589999999965  46667777654     33444443321  1    


Q ss_pred             --------CCHHHHHHHHHhhcc---------CCEEEEEeCCCCCCCccHHHHH
Q psy3650         271 --------LGLGTAYMHGLKYAT---------GNFIIIMDADLSHHPKFIPEMI  307 (435)
Q Consensus       271 --------~g~~~a~n~g~~~a~---------~d~v~~~d~D~~~~~~~l~~~~  307 (435)
                              .--...+|.|++..+         .-+|.|.|+|+.++.+.+++|-
T Consensus        75 ~~~~~~~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR  128 (253)
T 1v84_A           75 GDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMR  128 (253)
T ss_dssp             -------CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHH
T ss_pred             ccccCccccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHh
Confidence                    112367899998753         2567888999999988888764

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=94.23  E-value=0.47  Score=40.28  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHhhc-cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEee
Q psy3650         272 GLGTAYMHGLKYA-TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGT  321 (435)
Q Consensus       272 g~~~a~n~g~~~a-~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~  321 (435)
                      +...++..|++.. ..|+++++++|.- ++++.+..+++.+.+.+.+.+...
T Consensus        80 ~~~~~v~~al~~~~~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~  131 (229)
T 1qwj_A           80 TSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV  131 (229)
T ss_dssp             CHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred             cHHHHHHHHHHhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            4446778888876 5799999999995 788999999998876666655443

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=94.19  E-value=0.093  Score=45.38  Aligned_cols=115  Identities=13%  Similarity=0.186  Sum_probs=71.3

Q ss_pred             eEEEccCCC--CCCHHHHHHHHHhhcc--CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcccch
Q psy3650          36 KIVLKPRKK--KLGLGTAYMHGLKYAT--GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKR  111 (435)
Q Consensus        36 ~i~~~~~~~--n~g~~~a~n~gl~~a~--gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~  111 (435)
                      .|.++.+..  ....+..+|.|+..|.  .|+++|-|-|..+..+..          .    +.+...  ..+      +
T Consensus        85 ~I~VieQ~~~~~FNRa~LlNvGf~ea~~~~d~~ifHDVDLlP~dd~n----------~----Y~c~~~--~~P------~  142 (287)
T 3lw6_A           85 HIFVLNQVDRFRFNRASLINVGFQFASDVYDYIAMHDVDLLPLNDNL----------L----YEYPSS--LGP------L  142 (287)
T ss_dssp             EEEEEEECSSSCCCHHHHHHHHHHHSCTTCCEEEEECTTEEECCTTS----------C----CCCCCT--TCC------E
T ss_pred             EEEEEecCCCCccchhheecccHHHHhccCCEEEEecccccccCCCc----------c----ccCCCC--CCc------e
Confidence            455554433  4578999999999987  499999999986543211          0    111000  000      0


Q ss_pred             hhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccc-cccCc-hhhHHHHHHHHhhcceeEeee
Q psy3650         112 KLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC-VSKGY-VFQMEMVIRARQYNYTIGEVP  178 (435)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~d~~l~~r~~~~g~~~~~~~  178 (435)
                      .+...      ..-.........||..+++++.+.+++++. ...+| .+|.|+..|+...|+++...+
T Consensus       143 Hls~~------~~~~~~~Y~~~~GGv~a~~re~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~  205 (287)
T 3lw6_A          143 HIAGP------KLHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQ  205 (287)
T ss_dssp             ESSCT------TTCSSCCCTTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCS
T ss_pred             EEeec------cccCCCCcCCccccEEeccHHHHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCC
Confidence            11100      001122345556888899999999996554 34444 568999999999999987654

>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}

Probab=94.16  E-value=0.49  Score=40.13  Aligned_cols=102  Identities=11%  Similarity=0.084  Sum_probs=65.8

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCc--chHHHHHHHHHHhCCceEEEecCC--CCCC--
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPD--GTLDAAKQLQSIYGSEKIVLKPRK--KKLG--  272 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d--~t~~~~~~~~~~~~~~~i~~~~~~--~n~g--  272 (435)
                      .|.|-+|.|+|.+...... |..+...+..- +++..|||+|+..-  .+.++|++-     ++..+.+..+  .++.  
T Consensus         2 ~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~~V-p~l~WIVVEd~~~~~~~v~~lL~~s-----gl~y~HL~~~~~~~~~~~   74 (246)
T 2d0j_A            2 LPTIYAITPTYSRPVQKAE-LTRLANTFRQV-AQLHWILVEDAAARSELVSRFLARA-----GLPSTHLHVPTPRRYKRP   74 (246)
T ss_dssp             CCCEEEEEEECCSTTHHHH-HHHHHHHHTTS-TTEEEEEEESSSSCCHHHHHHHHHS-----CSCEEEEECCCCCC----
T ss_pred             CCEEEEEeCCCCccchhHH-HHHHHHHHhcC-CceEEEEEcCCCCCCHHHHHHHHHc-----CCceEEEecCCccccCCC
Confidence            4678899999998765544 33455555544 35889999997653  234555442     3344444322  1211  


Q ss_pred             ----HHHHHHHHHhhcc---------CCEEEEEeCCCCCCCccHHHHH
Q psy3650         273 ----LGTAYMHGLKYAT---------GNFIIIMDADLSHHPKFIPEMI  307 (435)
Q Consensus       273 ----~~~a~n~g~~~a~---------~d~v~~~d~D~~~~~~~l~~~~  307 (435)
                          ....+|.|++..+         .-+|.|.|+|+.++.+.+++|-
T Consensus        75 ~~prg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR  122 (246)
T 2d0j_A           75 GLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMR  122 (246)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHT
T ss_pred             CCcchHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHh
Confidence                2378899997642         3678999999999988888864

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=94.04  E-value=0.82  Score=39.10  Aligned_cols=98  Identities=13%  Similarity=0.135  Sum_probs=55.9

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFII  290 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~  290 (435)
                      ....+..+++.+.+    ....-+|+|+-+.  +.    +.+....+ ++.++..+.+...|.+.+. .+++....+.++
T Consensus        26 g~pli~~~i~~~~~----~~~~~~ivvv~~~--~~----i~~~~~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~l   93 (245)
T 1h7e_A           26 GKPMIQHVYERALQ----VAGVAEVWVATDD--PR----VEQAVQAF-GGKAIMTRNDHESGTDRLV-EVMHKVEADIYI   93 (245)
T ss_dssp             TEEHHHHHHHHHHT----CTTCCEEEEEESC--HH----HHHHHHHT-TCEEEECCSCCSSHHHHHH-HHHHHSCCSEEE
T ss_pred             CchHHHHHHHHHHh----CCCCCeEEEECCc--HH----HHHHHHHc-CCeEEeCCCccCCcHHHHH-HHHHhCCCCEEE
Confidence            33445555555433    2211377777643  22    33333333 3344332222234554444 555655679999


Q ss_pred             EEeCCCC-CCCccHHHHHHHHhcC-CCceEEe
Q psy3650         291 IMDADLS-HHPKFIPEMIKLQQQE-NLDVVTG  320 (435)
Q Consensus       291 ~~d~D~~-~~~~~l~~~~~~~~~~-~~~~v~~  320 (435)
                      ++++|.. ++++.+..+++.+.+. +.++++.
T Consensus        94 v~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~  125 (245)
T 1h7e_A           94 NLQGDEPMIRPRDVETLLQGMRDDPALPVATL  125 (245)
T ss_dssp             ECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             EEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEE
Confidence            9999996 6889999999988765 5665443

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=93.79  E-value=0.19  Score=42.72  Aligned_cols=52  Identities=12%  Similarity=0.126  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHhhcc--CCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEee
Q psy3650         270 KLGLGTAYMHGLKYAT--GNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGT  321 (435)
Q Consensus       270 n~g~~~a~n~g~~~a~--~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~  321 (435)
                      ..|...++..|++...  .|.++++++|.. ++++.+..+++.+.+.+.++++..
T Consensus        79 ~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~  133 (228)
T 1ezi_A           79 TASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA  133 (228)
T ss_dssp             -CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE
T ss_pred             CCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence            3456778888888763  589999999985 788899999987765555555543

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=93.66  E-value=0.27  Score=40.57  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             EEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc--cCCEEEEEeCCCC-CCCccHHHHHHHH
Q psy3650         234 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADLS-HHPKFIPEMIKLQ  310 (435)
Q Consensus       234 eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a--~~d~v~~~d~D~~-~~~~~l~~~~~~~  310 (435)
                      +|+|+.+...+    .++++.... ++.+... .....|.+.++..|++..  ..++++++++|.. ++++.+..+++. 
T Consensus        48 ~i~vv~~~~~~----~~~~~~~~~-~~~~~~~-~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~-  120 (199)
T 2waw_A           48 QLIVTLGGAAD----EVLEKVELD-GLDIVLV-DDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG-  120 (199)
T ss_dssp             EEEEEECTTHH----HHHHHSCCT-TSEEEEC-CCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH-
T ss_pred             cEEEEeCCCHH----HHHHHhccC-CCEEEEC-CCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh-
Confidence            77777543221    233332221 3344332 223457788899999887  5699999999996 688999999988 


Q ss_pred             hcCCCceEEe
Q psy3650         311 QQENLDVVTG  320 (435)
Q Consensus       311 ~~~~~~~v~~  320 (435)
                      . .+.++++.
T Consensus       121 ~-~~~~~~~~  129 (199)
T 2waw_A          121 G-RGATIAVC  129 (199)
T ss_dssp             H-TTCSEEEE
T ss_pred             c-CCCCEEEE
Confidence            4 45555543

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=93.65  E-value=0.82  Score=38.77  Aligned_cols=87  Identities=14%  Similarity=0.099  Sum_probs=53.0

Q ss_pred             CChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEEEEE
Q psy3650         213 ENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIM  292 (435)
Q Consensus       213 ~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~  292 (435)
                      ..+..+++.+.+.     .. +|+|+-+.  +    .+.+.....  ..+...+.....|.+.+. .+++....|+++++
T Consensus        28 pli~~~l~~~~~~-----~~-~i~v~~~~--~----~i~~~~~~~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~vlv~   92 (234)
T 2y6p_A           28 PLIRWVVEGLVKT-----GE-RVILATDS--E----RVKEVVEDL--CEVFLTPSDLPSGSDRVL-YVVRDLDVDLIINY   92 (234)
T ss_dssp             EHHHHHHHHHHTT-----TS-CEEEEESC--H----HHHHHHTTT--SEEEECCTTCCSHHHHHH-HHHTTCCCSEEEEC
T ss_pred             EHHHHHHHHHHHh-----CC-EEEEECCh--H----HHHHHHHhc--eEEEECCcccccchHHHH-HHHHhCCCCEEEEe
Confidence            4455555555432     12 66666543  2    233333332  355443333345666655 56676677999999


Q ss_pred             eCCC-CCCCccHHHHHHHHhcCC
Q psy3650         293 DADL-SHHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       293 d~D~-~~~~~~l~~~~~~~~~~~  314 (435)
                      ++|. .+++..+..+++.+.+.+
T Consensus        93 ~~D~P~~~~~~i~~l~~~~~~~~  115 (234)
T 2y6p_A           93 QGDEPFVYEEDIKLIFRELEKGE  115 (234)
T ss_dssp             CTTCCCCCHHHHHHHHHHHHHTC
T ss_pred             cCCcCcCCHHHHHHHHHHHHhCC
Confidence            9999 678899999999876655

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=93.40  E-value=0.25  Score=47.65  Aligned_cols=191  Identities=14%  Similarity=0.163  Sum_probs=108.5

Q ss_pred             EEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc
Q psy3650         205 LLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA  284 (435)
Q Consensus       205 vip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a  284 (435)
                      ++|+.|. ..|...|+.+.+.    . .-+|+||-.-..+.-.+.+.++.... ...+.++..++..|.+.|+..++...
T Consensus        34 l~pv~gk-p~i~~~l~~~~~~----g-~~~i~vv~~~~~~~i~~~~~~~~~~~-~~~i~~~~q~~~lGTa~Av~~a~~~l  106 (501)
T 3st8_A           34 LHTLAGR-SMLSHVLHAIAKL----A-PQRLIVVLGHDHQRIAPLVGELADTL-GRTIDVALQDRPLGTGHAVLCGLSAL  106 (501)
T ss_dssp             GCEETTE-EHHHHHHHHHHHH----C-CSEEEEEECTTHHHHHHHHHHHHHHH-TSCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred             HeEECCh-hHHHHHHHHHHhC----C-CCEEEEEeCCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCCcHHHHHHHHHHh
Confidence            3555654 3566677766552    1 23777776543344444444433333 23555565777889999999999987


Q ss_pred             cC---CEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceecc------chhHHHHHHHHHHHHHHhcCCC
Q psy3650         285 TG---NFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGW------DFKRKLVSRGANYLTQLLLRPG  354 (435)
Q Consensus       285 ~~---d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  354 (435)
                      ..   +.++++.+|. .+..+.+..|++..+..+.++.+......+...++.      .....+..+....-.    ...
T Consensus       107 ~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp~~yG~i~~~~~g~v~~ivEk~~~~~~----~~~  182 (501)
T 3st8_A          107 PDDYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPS----QRE  182 (501)
T ss_dssp             CTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECTTCCEEEEECGGGCCHH----HHH
T ss_pred             ccccccceeeecCcceeecHHHHHHHHHHHhhccccceEeeeccCCchhccccccccceeEEeeccccCCChh----hcc
Confidence            54   4677777877 477888999999887767776655443333211110      000000000000000    001


Q ss_pred             ccccccceeeecHHHHHHhhhcc---cCcccchhhHHHHHHHHCCCcEEEeeeEE
Q psy3650         355 VSDLTGSFRLYKKQVLENLVSSC---VSKGYVFQMEMVIRARQYNYTIGEVPISF  406 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~D~el~lr~~~~G~~i~~~p~~~  406 (435)
                      .....+|.++|+.+.++++....   ....-.+-.+....+...|..+.......
T Consensus       183 i~~in~Giy~f~~~~l~~~l~~l~~~n~~~e~yltd~i~~~~~~g~~v~~~~~~~  237 (501)
T 3st8_A          183 IREVNAGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDD  237 (501)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHTTCCCCSTTCSCCTTHHHHHHHHTTCCEEEEECSS
T ss_pred             ceeeeceeeeecchhHHHhhhhhcccccccccchhhHHHHHHhcCceEEEEeccc
Confidence            22356777899999998885321   12233345666667888898887665543

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=92.58  E-value=0.28  Score=46.68  Aligned_cols=179  Identities=9%  Similarity=0.048  Sum_probs=93.2

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc-CCEE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT-GNFI  289 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~-~d~v  289 (435)
                      ....+..+++.+.+.    . .-+|+++-+...    +.++++....   .+.++..+...|.+.++..|++... .+.+
T Consensus        35 g~pli~~~l~~l~~~----~-~~~i~vv~~~~~----~~i~~~~~~~---~~~~v~~~~~~g~~~~i~~~~~~~~~~~~~  102 (459)
T 4fce_A           35 GKPMVQHVIDAAMKL----G-AQHVHLVYGHGG----ELLKKTLADP---SLNWVLQAEQLGTGHAMQQAAPHFADDEDI  102 (459)
T ss_dssp             TEEHHHHHHHHHHHH----T-CSCEEEEESSCH----HHHHHHC--------CEEECSSCCCHHHHHHHHGGGSCTTSEE
T ss_pred             CeeHHHHHHHHHHhC----C-CCcEEEEeCCCH----HHHHHHhccC---CcEEEeCCCCCCcHHHHHHHHHhcCCCCcE
Confidence            345566666666543    1 226766654332    2233322221   2333335667788999999999886 4999


Q ss_pred             EEEeCCC-CCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC---CCccccccceeee
Q psy3650         290 IIMDADL-SHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR---PGVSDLTGSFRLY  365 (435)
Q Consensus       290 ~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  365 (435)
                      +++++|. .+.++.+.++++.+.+  .++++......+...  +.....-..+......+....   .......++..+|
T Consensus       103 lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~~~~~~~~--~g~v~~~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~  178 (459)
T 4fce_A          103 LMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTVKLDNPSG--YGRIVRENGDVVGIVEHKDASDAQREINEINTGILVA  178 (459)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEEECSCCTT--SCEEEEETTEEEEEECGGGCCTTGGGCCEEEEEEEEE
T ss_pred             EEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEEecCCCCc--ccEEEeCCCcEEEEEECCCCChHHhhccEEEEEEEEE
Confidence            9999999 4888999999998754  344333322221110  000000000000000000000   0112345677899


Q ss_pred             cHHHHHHhhhccc---CcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         366 KKQVLENLVSSCV---SKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       366 ~r~~~~~~~~~~~---~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      +++.+.++.....   ..+-.+-.+++-++.+.|.++..++..
T Consensus       179 ~~~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~  221 (459)
T 4fce_A          179 NGRDLKRWLSLLDNNNAQGEFYITDIIALAHADGKKIATVHPT  221 (459)
T ss_dssp             EHHHHHHHHHTCCCCSTTCSCCTTHHHHHHHHTTCCEEEECCS
T ss_pred             EHHHHHHHHHHhCccccCCcEEHHHHHHHHHHCCCeEEEEEcC
Confidence            9998866532111   111122356677788899988877754

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=92.37  E-value=1.6  Score=36.41  Aligned_cols=95  Identities=14%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....++.+++.+..       . +|+||-+.     .+.++.+.... ++.++. ......|...++..|++.+ .+++
T Consensus        24 ~G~pli~~~~~~l~~-------~-~vvvv~~~-----~~~~~~~~~~~-~~~~v~-d~~~~~G~~~si~~gl~~~-~~~v   87 (208)
T 3ngw_A           24 CGKKLIEWVLEKYSP-------F-QTVFVCRD-----EKQAEKLSSRY-EAEFIW-DLHKGVGSIAGIHAALRHF-GSCV   87 (208)
T ss_dssp             TTEEHHHHHHHHHTT-------S-EEEEECSS-----HHHHHHHHTTS-CSCEEC-CTTCCCSHHHHHHHHHHHH-SSEE
T ss_pred             CCeeHHHHHHHHhcC-------C-CEEEEECC-----HHHHHHHHHhc-CCeEEe-cCCCCCChHHHHHHHHHHc-CCCE
Confidence            444555555555422       2 88888642     12333443322 334432 2233457779999999998 9999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhcCCCceEEee
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVTGT  321 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~  321 (435)
                       ++.+|.- ++++.+..+++.+...+.+++++.
T Consensus        88 -v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~  119 (208)
T 3ngw_A           88 -VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK  119 (208)
T ss_dssp             -EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             -EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence             9999995 799999999998865466776654

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=92.16  E-value=0.42  Score=42.02  Aligned_cols=142  Identities=13%  Similarity=0.060  Sum_probs=77.8

Q ss_pred             ceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCc----cHHHHHHHHhcCCCceEEeeeEECCCceeccchh
Q psy3650         260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK----FIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFK  335 (435)
Q Consensus       260 ~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~----~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  335 (435)
                      ..+.++..+...|.+.++..++.....+.++++.+|..+.++    .+.++++...+.+. .+++....+......+...
T Consensus        95 ~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v  173 (281)
T 3juk_A           95 CCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVI  173 (281)
T ss_dssp             CEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEE
T ss_pred             ccEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEE
Confidence            356566666678999999999988877889999999987777    79999998765454 3333332211111111110


Q ss_pred             HHHH-HHHHHHHHHHhc-----CCCccccccceeeecHHHHHHhhhcccC--cccchhhHHHHHHHHCCCcEEEeee
Q psy3650         336 RKLV-SRGANYLTQLLL-----RPGVSDLTGSFRLYKKQVLENLVSSCVS--KGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       336 ~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ..-. ......+....-     ........+|..+|++++|+.+......  ..+. -.++.-.+...| ++..++.
T Consensus       174 ~~~~~~~g~~~v~~~~Ekp~~~~~~~~~~~~GiYi~~~~~l~~l~~~~~~~~~e~~-l~d~i~~l~~~~-~v~~~~~  248 (281)
T 3juk_A          174 RGEWLEEGVYEIKDMVEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQ-ITDALRTQAKRK-RIIAYQF  248 (281)
T ss_dssp             EEEEEETTEEEEEEEEESCCTTTCSCSEEEEEEEEECTTHHHHHHTCCCCGGGSCC-HHHHHHHHHHHS-CCEEEEC
T ss_pred             EeccCCCCceEEeEEEECcCCCCCCcceeEEEEEEECHHHHHHHHhcCCCCCCcee-HHHHHHHHHhcC-CEEEEEe
Confidence            0000 000000000000     0112234677889999999877432111  1222 256666666666 6655554

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=92.13  E-value=4.3  Score=34.07  Aligned_cols=93  Identities=11%  Similarity=0.033  Sum_probs=56.5

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc------
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA------  284 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a------  284 (435)
                      ....+..+++.+.+    ....-+|+|+-+...+...+ +.+    .....+.++  .+..|.+.++..|++..      
T Consensus        33 gkpli~~~l~~l~~----~~~~~~ivvv~~~~~~~~~~-~~~----~~~~~i~~~--~~~~~~~~si~~~l~~~~~~~~~  101 (231)
T 1vgw_A           33 SKTVLEHVLGIFER----HEAVDLTVVVVSPEDTFADK-VQT----AFPQVRVWK--NGGQTRAETVRNGVAKLLETGLA  101 (231)
T ss_dssp             TEEHHHHHHHHHHT----CTTCCEEEEECCTTCSTHHH-HHH----HCTTSEEEC--CCCSSHHHHHHHHHHHHHHHSSS
T ss_pred             CeEHHHHHHHHHHc----CCCCCeEEEEECccHHHHHH-HHh----cCCCceEEE--cCCCcHHHHHHHHHHHHhhhccC
Confidence            44455555555533    11123777776443333333 322    211134444  23567888888888876      


Q ss_pred             -cCCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650         285 -TGNFIIIMDADLS-HHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       285 -~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~  314 (435)
                       ..+.++++++|.. ++++.+..+++.+.+.+
T Consensus       102 ~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~  133 (231)
T 1vgw_A          102 AETDNILVHDAARCCLPSEALARLIEQAGNAA  133 (231)
T ss_dssp             CTTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred             CCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence             4699999999985 78889999999876543

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=91.97  E-value=0.59  Score=38.75  Aligned_cols=48  Identities=13%  Similarity=0.182  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHhhccCCEEEEEeCCC-CCCCccHHHHHHHHhcCCCceEEe
Q psy3650         271 LGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      .|...++..|++....++++++++|. .++++.+..+++.  ..+.++++.
T Consensus        77 ~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~~~  125 (201)
T 1e5k_A           77 PGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVVWV  125 (201)
T ss_dssp             CSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEEEE
T ss_pred             CCHHHHHHHHHHhCCCCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEEEE
Confidence            58899999999998889999999999 5889999999887  345566554

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=91.77  E-value=0.39  Score=39.70  Aligned_cols=50  Identities=18%  Similarity=0.297  Sum_probs=40.0

Q ss_pred             CCHHHHHHHHHhhccC-CEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEee
Q psy3650         271 LGLGTAYMHGLKYATG-NFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGT  321 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~~-d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~  321 (435)
                      .|.+.++..|++.... ++++++++|.. ++++.+..+++.+ +.+.++++..
T Consensus        71 ~G~~~si~~al~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~  122 (197)
T 3d5n_A           71 EGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPT  122 (197)
T ss_dssp             GCHHHHHHHHHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEE
T ss_pred             CCHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEE
Confidence            5788899999998765 89999999994 7889999999877 4555655543

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=91.75  E-value=0.27  Score=46.95  Aligned_cols=178  Identities=10%  Similarity=0.095  Sum_probs=92.3

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc--CCEE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT--GNFI  289 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~--~d~v  289 (435)
                      ...+..+++.+.+    .. .-+|+++-+..    .+.+++....  .+.+  +..+...|.+.++..|++...  .+.+
T Consensus        39 kpli~~~l~~l~~----~g-~~~iivv~~~~----~~~i~~~~~~--~i~~--v~~~~~~G~~~sl~~a~~~~~~~~~~v  105 (468)
T 1hm9_A           39 ISMLEHVFRSVGA----IQ-PEKTVTVVGHK----AELVEEVLAG--QTEF--VTQSEQLGTGHAVMMTEPILEGLSGHT  105 (468)
T ss_dssp             EEHHHHHHHHHHT----TC-CSEEEEEECTT----HHHHHHSSSS--SSEE--EECSSCCCHHHHHHTTHHHHTTCCSEE
T ss_pred             ccHHHHHHHHHHh----cC-CCCEEEEECCC----HHHHHHHhCC--CcEE--EeCCccCChHHHHHHHHHHhccCCCeE
Confidence            3556666665543    11 23677765432    1222222111  2233  335556788999999988775  6899


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC---CCccccccceeee
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR---PGVSDLTGSFRLY  365 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  365 (435)
                      +++++|.. +.++.+.++++.+.+.+.++++......+....+.-.... ..+...+..+....   .......++..+|
T Consensus       106 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~g~v~~d~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f  184 (468)
T 1hm9_A          106 LVIAGDTPLITGESLKNLIDFHINHKNVATILTAETDNPFGYGRIVRND-NAEVLRIVEQKDATDFEKQIKEINTGTYVF  184 (468)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECSCCTTSCEEEECT-TCCEEEEECTTTCCTTGGGCCEEEEEEEEE
T ss_pred             EEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccCCCCceeEEEECC-CCCEEEEEECCCCChHHhcCeEEEEEEEEE
Confidence            99999996 7888999999988766666655433222211000000000 00000000000000   0112345667899


Q ss_pred             cHHHHHHhhhcccC----cccchhhHHHHHHHHCCCcEEEeee
Q psy3650         366 KKQVLENLVSSCVS----KGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       366 ~r~~~~~~~~~~~~----~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      +++.+.+.......    ..+. -.|++-++.+.|.++..++.
T Consensus       185 ~~~~l~~~l~~~~~~~~~~~~~-~~d~~~~l~~~g~~v~~~~~  226 (468)
T 1hm9_A          185 DNERLFEALKNINTNNAQGEYY-ITDVIGIFRETGEKVGAYTL  226 (468)
T ss_dssp             EHHHHHHHHTTCCSCSTTCSCC-TTHHHHHHHHHTCCEEEEEC
T ss_pred             EHHHHHHHHHhhccccCCCeEE-HHHHHHHHHHCCCEEEEEEc
Confidence            99966554211111    1122 25677778888988876544

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=91.65  E-value=0.37  Score=39.63  Aligned_cols=96  Identities=13%  Similarity=0.181  Sum_probs=55.5

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc--cCCE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TGNF  288 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a--~~d~  288 (435)
                      ....+..+++.+.+.    . .-+|+|+-+...    +.+++..... ++.++.. .....|...++..|++..  ..++
T Consensus        30 g~pll~~~l~~l~~~----~-~~~i~vv~~~~~----~~~~~~~~~~-~~~~~~~-~~~~~g~~~~i~~al~~~~~~~~~   98 (197)
T 2wee_A           30 DTTVLGATLDVARQA----G-FDQLILTLGGAA----SAVRAAMALD-GTDVVVV-EDVERGCAASLRVALARVHPRATG   98 (197)
T ss_dssp             TEEHHHHHHHHHHHT----T-CSEEEEEECTTH----HHHHHHSCCT-TSEEEEC-C----CCHHHHHHHHTTSCTTEEE
T ss_pred             CccHHHHHHHHHHhc----C-CCcEEEEeCCCH----HHHHHHhccC-CCEEEEC-CCcccCHHHHHHHHHHHhcccCCe
Confidence            334555566555431    1 227777754321    2233322221 3344332 223357789999999887  4589


Q ss_pred             EEEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650         289 IIIMDADLS-HHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       289 v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      ++++++|.. ++++.+..+++. . .+.++++
T Consensus        99 vlv~~~D~P~~~~~~i~~l~~~-~-~~~~i~~  128 (197)
T 2wee_A           99 IVLMLGDQPQVAPATLRRIIDV-G-PATEIMV  128 (197)
T ss_dssp             EEEEETTCTTCCHHHHHHHHHH-G-GGSSEEE
T ss_pred             EEEEeCCcCCCCHHHHHHHHhh-c-CCCCEEE
Confidence            999999995 788999999988 4 3445443

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=91.44  E-value=0.7  Score=40.23  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=51.1

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIK   83 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~   83 (435)
                      -+|+|+-|  .    +.++++.+.+ ...+.+.......|.+. ...++...   ..|+++++++|. .++++.+..+++
T Consensus        59 ~~IvV~t~--~----~~i~~~~~~~-g~~v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~  130 (264)
T 3k8d_A           59 ERIIVATD--H----EDVARAVEAA-GGEVCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVAD  130 (264)
T ss_dssp             SEEEEEES--C----HHHHHHHHHT-TCEEEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHH
T ss_pred             CEEEEECC--H----HHHHHHHHHc-CCEEEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHH
Confidence            47777753  1    2333443333 34555433333445544 45555543   569999999999 678899999999


Q ss_pred             HHhcCCCcEEEEe
Q psy3650          84 LQQQENLDVVTGT   96 (435)
Q Consensus        84 ~~~~~~~~~v~g~   96 (435)
                      .+.+.++++++..
T Consensus       131 ~~~~~~~~~~~~~  143 (264)
T 3k8d_A          131 NLAQRQVGMATLA  143 (264)
T ss_dssp             HHHTSSCSEEEEE
T ss_pred             HHhhcCCCEEEEE
Confidence            9977777665443

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=90.97  E-value=1.6  Score=37.61  Aligned_cols=81  Identities=10%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIK   83 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~   83 (435)
                      -+|+|+-|.      +.++++.+.+ ...+.+...+...|.+++ ..+++..   ..|+++++++|. .+++..+..+++
T Consensus        43 ~~ivVv~~~------~~i~~~~~~~-g~~v~~~~~~~~~Gt~~~-~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~l~~  114 (252)
T 3oam_A           43 DRVIIATDD------ERVEQAVQAF-GGVVCMTSPNHQSGTERL-AEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQVAD  114 (252)
T ss_dssp             SEEEEEESC------HHHHHHHHHT-TCEEEECCTTCCSHHHHH-HHHHHHTTCCTTSEEEECCTTCTTCCHHHHHHHHH
T ss_pred             CeEEEECCH------HHHHHHHHHc-CCEEEEcCCCCCCcHHHH-HHHHHhcCcCCCCEEEEEeCCeeecCHHHHHHHHH
Confidence            477777531      2334443333 345665444445566664 4445444   469999999999 678999999999


Q ss_pred             HHhcCCCcEEEEe
Q psy3650          84 LQQQENLDVVTGT   96 (435)
Q Consensus        84 ~~~~~~~~~v~g~   96 (435)
                      .+.+.++++++..
T Consensus       115 ~~~~~~~~~~~~~  127 (252)
T 3oam_A          115 NLAACSAPMATLA  127 (252)
T ss_dssp             HHHHSSCSEEEEE
T ss_pred             HHHhcCCCEEEEe
Confidence            9876666665544

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=90.76  E-value=2.4  Score=36.59  Aligned_cols=96  Identities=8%  Similarity=0.167  Sum_probs=53.0

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc---cCC
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGN  287 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a---~~d  287 (435)
                      ....+..+++.+.+.    .. -+|+|+.+.  +.    +.++.... ++.++..+.....|.+ ....++...   ..+
T Consensus        26 gkpli~~~l~~l~~~----~~-~~ivvv~~~--~~----i~~~~~~~-~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~   92 (262)
T 1vic_A           26 GKPMIQHVFEKALQS----GA-SRVIIATDN--EN----VADVAKSF-GAEVCMTSVNHNSGTE-RLAEVVEKLAIPDNE   92 (262)
T ss_dssp             TEEHHHHHHHHHHHT----TC-SEEEEEESC--HH----HHHHHHHT-TCEEEECCCSSCCHHH-HHHHHHHHTTCCTTC
T ss_pred             CeEHHHHHHHHHHhC----CC-ceEEEECCc--HH----HHHHHHhc-CCEEEECCccccCChH-HHHHHHHHhccCCCC
Confidence            334555666655432    12 377777642  22    23333332 3344332112233444 233334332   469


Q ss_pred             EEEEEeCCCC-CCCccHHHHHHHHhcCCCceEE
Q psy3650         288 FIIIMDADLS-HHPKFIPEMIKLQQQENLDVVT  319 (435)
Q Consensus       288 ~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~  319 (435)
                      +++++++|.. ++++.+..+++.+.+.+.++++
T Consensus        93 ~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  125 (262)
T 1vic_A           93 IIVNIQGDEPLIPPVIVRQVADNLAKFNVNMAS  125 (262)
T ss_dssp             EEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEE
Confidence            9999999995 7889999999987655555544

>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*

Probab=90.38  E-value=0.21  Score=43.79  Aligned_cols=114  Identities=14%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCc-chHHHHHHHHHHhCCceEEEecCCCCCCHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPD-GTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAY  277 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d-~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~  277 (435)
                      ..+++++|-+|+....+.++++.    ......--||+||=++... ........+..  ..+.+++...+.|.  -.++
T Consensus        27 ~~~FTvvi~ty~R~~~L~~lv~~----~~~~~~v~~IvVvWn~~~~~pp~~~~~~~~~--~~vpv~v~~~~~ns--LnnR   98 (293)
T 1omz_A           27 LDSFTLIMQTYNRTDLLLRLLNH----YQAVPSLHKVIVVWNNVGEKGPEELWNSLGP--HPIPVIFKPQTANK--MRNR   98 (293)
T ss_dssp             TTCEEEEEEESSCHHHHHHHHHH----HTTSTTEEEEEEEECCTTCCCTHHHHHHTCC--CSSCEEEEECSSCC--GGGG
T ss_pred             CCceEEEEEeecccHHHHHHHHH----HhcCCCCCeEEEEeCCCCCCCChhhccccCC--CCccEEEEeCCCCc--hhhc
Confidence            46799999999865443333332    2332333588888777543 22222222210  12456666565442  2333


Q ss_pred             HHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEe
Q psy3650         278 MHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       278 n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      -.-....++|.|+.+|+|..++.+.|+-....+++.+.-+|+-
T Consensus        99 F~p~~~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf  141 (293)
T 1omz_A           99 LQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGF  141 (293)
T ss_dssp             GSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEES
T ss_pred             cCCCccCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecC
Confidence            3333445789999999999999999999999998777666654

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=89.91  E-value=1.3  Score=37.01  Aligned_cols=79  Identities=15%  Similarity=0.254  Sum_probs=54.4

Q ss_pred             EEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhc
Q psy3650           9 EIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQ   87 (435)
Q Consensus         9 EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~   87 (435)
                      +|+||-+.     .+.++.+.+.. ...++. ......|...++..|++.+ .+++ ++.+|. .++++.+..+++.+.+
T Consensus        40 ~vvvv~~~-----~~~~~~~~~~~-~~~~v~-d~~~~~G~~~si~~gl~~~-~~~v-v~~~D~P~i~~~~i~~l~~~~~~  110 (208)
T 3ngw_A           40 QTVFVCRD-----EKQAEKLSSRY-EAEFIW-DLHKGVGSIAGIHAALRHF-GSCV-VAAIDMPFVKPEVLEHLYKEGEK  110 (208)
T ss_dssp             EEEEECSS-----HHHHHHHHTTS-CSCEEC-CTTCCCSHHHHHHHHHHHH-SSEE-EEETTCTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEECC-----HHHHHHHHHhc-CCeEEe-cCCCCCChHHHHHHHHHHc-CCCE-EEECCccCCCHHHHHHHHHHhhc
Confidence            88888531     23344444322 233432 2233457889999999999 9999 999999 5688999999998865


Q ss_pred             CCCcEEEEe
Q psy3650          88 ENLDVVTGT   96 (435)
Q Consensus        88 ~~~~~v~g~   96 (435)
                      .+.++++..
T Consensus       111 ~~~~~v~~~  119 (208)
T 3ngw_A          111 AGCDALIPK  119 (208)
T ss_dssp             HTCSEEEEE
T ss_pred             CCCCEEEEc
Confidence            566777654

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=89.52  E-value=1.1  Score=37.85  Aligned_cols=55  Identities=13%  Similarity=0.063  Sum_probs=39.7

Q ss_pred             ceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCC
Q psy3650          35 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENL   90 (435)
Q Consensus        35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~   90 (435)
                      ..+.+.+.....|.+++. .|++....|+++++++|. .+++..+..+++...+.+.
T Consensus        61 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~  116 (234)
T 2y6p_A           61 CEVFLTPSDLPSGSDRVL-YVVRDLDVDLIINYQGDEPFVYEEDIKLIFRELEKGER  116 (234)
T ss_dssp             SEEEECCTTCCSHHHHHH-HHHTTCCCSEEEECCTTCCCCCHHHHHHHHHHHHHTCS
T ss_pred             eEEEECCcccccchHHHH-HHHHhCCCCEEEEecCCcCcCCHHHHHHHHHHHHhCCC
Confidence            355543333345666666 477776779999999999 7788999999998866553

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=89.17  E-value=3.8  Score=34.32  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHHhhcc--CCEEEEEeCCC-CCCCccHHHHHHHHhcCC
Q psy3650         271 LGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~--~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~  314 (435)
                      .|...++..|++...  .++++++|+|. .++++.+..+++.+.+.+
T Consensus        81 ~~~~~sv~~al~~~~~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~  127 (228)
T 2yc3_A           81 KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVG  127 (228)
T ss_dssp             SSHHHHHHHHHTTSCTTCSEEEEEETTCTTCCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHhhccCCCEEEEecCCCccCCHHHHHHHHHHHHhcC
Confidence            577888899998765  48999999997 578889999999876544

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=88.59  E-value=1.6  Score=37.77  Aligned_cols=79  Identities=13%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc---cCCEEEEEcCCC-CCCCCcHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA---TGNFIIIMDADL-SHHPKFIPEMIK   83 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a---~gd~i~~lD~D~-~~~~~~l~~~~~   83 (435)
                      -+|+|+-|  .    +.++++.+.+ ...+.+...+...|.+. ...|++..   ..|+++++++|. .++++.+..+++
T Consensus        50 ~~VvVvt~--~----~~i~~~~~~~-g~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~  121 (256)
T 3tqd_A           50 EEVVIATD--D----KRIRQVAEDF-GAVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAE  121 (256)
T ss_dssp             SEEEEEES--C----HHHHHHHHHT-TCEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECC--H----HHHHHHHHHc-CCeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHH
Confidence            47777743  1    2333433333 34555543334446554 56677665   469999999999 678899999999


Q ss_pred             HHhcC-CCcEEE
Q psy3650          84 LQQQE-NLDVVT   94 (435)
Q Consensus        84 ~~~~~-~~~~v~   94 (435)
                      .+.+. +++++.
T Consensus       122 ~~~~~~~~~~a~  133 (256)
T 3tqd_A          122 DLDEHDNVKVAS  133 (256)
T ss_dssp             HHHHCC--CEEE
T ss_pred             HHHhCCCCCEEE
Confidence            98653 445543

>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*

Probab=88.54  E-value=9.9  Score=35.72  Aligned_cols=49  Identities=14%  Similarity=0.075  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEe
Q psy3650         271 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~  320 (435)
                      .|.+.++..++....   .+.++++.+|...+ ..+.++++...+.+.++..+
T Consensus       118 ~Gt~~al~~a~~~~~~~~~~~~lv~~~D~~~~-~~l~~l~~~~~~~~~~~tl~  169 (451)
T 1yp2_A          118 QGTADAVRQYLWLFEEHTVLEYLILAGDHLYR-MDYEKFIQAHRETDADITVA  169 (451)
T ss_dssp             CSHHHHHHHTHHHHTTSCCSEEEEECSCEECC-CCHHHHHHHHHHTTCSEEEE
T ss_pred             cCcHHHHHHHHHHHHhcCCCeEEEecCcEEEc-CCHHHHHHHHHHcCCcEEEE
Confidence            688899998888764   58999999999654 56899998876666666554

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=87.74  E-value=3  Score=35.44  Aligned_cols=81  Identities=15%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCC-CCCCcHHHHHHHHh
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQ   86 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~-~~~~~l~~~~~~~~   86 (435)
                      -+|+||-+.      +.+.++..+. ...++.-+.+...|.+++. .|+.....++++++++|.. ++++.+..+++...
T Consensus        44 ~~ivvv~~~------~~i~~~~~~~-~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~  115 (245)
T 1h7e_A           44 AEVWVATDD------PRVEQAVQAF-GGKAIMTRNDHESGTDRLV-EVMHKVEADIYINLQGDEPMIRPRDVETLLQGMR  115 (245)
T ss_dssp             CEEEEEESC------HHHHHHHHHT-TCEEEECCSCCSSHHHHHH-HHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHH
T ss_pred             CeEEEECCc------HHHHHHHHHc-CCeEEeCCCccCCcHHHHH-HHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHH
Confidence            477777542      2333433333 2344432222334555544 5566556799999999994 58889999999886


Q ss_pred             cC-CCcEEEEe
Q psy3650          87 QE-NLDVVTGT   96 (435)
Q Consensus        87 ~~-~~~~v~g~   96 (435)
                      +. ++++++..
T Consensus       116 ~~~~~~~~~~~  126 (245)
T 1h7e_A          116 DDPALPVATLC  126 (245)
T ss_dssp             HCTTCCEEEEE
T ss_pred             hCCCCCEEEEe
Confidence            66 67765433

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=87.55  E-value=1.3  Score=39.12  Aligned_cols=55  Identities=15%  Similarity=0.176  Sum_probs=43.3

Q ss_pred             eEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCC--CccHHHHHHHHhcCCC
Q psy3650         261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH--PKFIPEMIKLQQQENL  315 (435)
Q Consensus       261 ~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~--~~~l~~~~~~~~~~~~  315 (435)
                      .+.++..+...|.+.++..++.....+.++++.+|..+.  +..+..+++...+.+.
T Consensus       107 ~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~  163 (297)
T 2ux8_A          107 NIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG  163 (297)
T ss_dssp             SEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHCS
T ss_pred             ceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcCC
Confidence            455555566779999999998887678899999999877  6889999988765444

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=87.51  E-value=3.3  Score=36.60  Aligned_cols=60  Identities=15%  Similarity=0.097  Sum_probs=44.6

Q ss_pred             ceEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCCCC----Cc---cHHHHHHHHhcCCCceEEe
Q psy3650         260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHH----PK---FIPEMIKLQQQENLDVVTG  320 (435)
Q Consensus       260 ~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~----~~---~l~~~~~~~~~~~~~~v~~  320 (435)
                      ..+.++..+...|.+.++..++.....+.++++.+|..+.    +.   .+.++++...+.+. .+++
T Consensus       102 ~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~  168 (302)
T 2e3d_A          102 VTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIM  168 (302)
T ss_dssp             CEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEE
T ss_pred             cceEEeeCCccCCHHHHHHHHHHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEE
Confidence            3555555566789999999999887668899999999876    45   79999987765444 3444

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=87.38  E-value=2.9  Score=37.16  Aligned_cols=106  Identities=11%  Similarity=0.045  Sum_probs=62.2

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH-hCCc-eEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI-YGSE-KIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~-~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|..+....+..+++.+.+.      .-+|+|+-+..   ..+.+.+.... . +. ++.++..+...|.+.++..++..
T Consensus        31 l~i~gg~pli~~~l~~l~~~------~~~i~vv~~~~---~~~~i~~~~~~~~-~~~~~~~i~~~~~~gt~~al~~a~~~  100 (308)
T 2qh5_A           31 LKLFDHKSLFELSFKRNASL------VDETLIVCNEK---HYFLALEEIKNEI-KNKSVGFLLESLSKNTANAIALSALM  100 (308)
T ss_dssp             CTTBTTBCHHHHHHHHHHTT------CSEEEEEEEGG---GHHHHHHHTTTTC-SSCEEEEEEESSCCCHHHHHHHHHHT
T ss_pred             EECCCCCCHHHHHHHHHHcc------CCCEEEEEChh---HHHHHHHHHHHhh-CCCccEEEeCCCCCChHHHHHHHHHH
Confidence            34434555666666665442      12666664331   12233333222 2 22 34344455567899998888887


Q ss_pred             cc-CCEEEEEeCCCCC-CCccHHHHHHH---HhcCCCceEEee
Q psy3650         284 AT-GNFIIIMDADLSH-HPKFIPEMIKL---QQQENLDVVTGT  321 (435)
Q Consensus       284 a~-~d~v~~~d~D~~~-~~~~l~~~~~~---~~~~~~~~v~~~  321 (435)
                      .. .++++++.+|..+ +++.+.++++.   ..+.+.+++.+.
T Consensus       101 l~~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  143 (308)
T 2qh5_A          101 SDKEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGV  143 (308)
T ss_dssp             SCTTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hCCCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence            65 4689999999986 67778888876   434455555543

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=87.19  E-value=2  Score=37.33  Aligned_cols=62  Identities=8%  Similarity=0.034  Sum_probs=47.5

Q ss_pred             ceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEee
Q psy3650          35 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR   97 (435)
Q Consensus        35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~   97 (435)
                      ..+.+.......|.+.++..|+.....+.++++.+|..+. ..+..+++...+.+.++++...
T Consensus        97 ~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~-~~l~~l~~~~~~~~~~~~~~~~  158 (269)
T 4ecm_A           97 VSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFS-DDIRPYVEEFTNQKEGAKVLLQ  158 (269)
T ss_dssp             CEEEEEECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEES-SCSHHHHHHHHTSSSSEEEEEE
T ss_pred             ceEEEeeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCc-cCHHHHHHHHHhcCCCeEEEEE
Confidence            3555555566779999999998887789999999999665 7788888888766777665543

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=87.17  E-value=10  Score=32.19  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=56.7

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh-CCceEEEecCCCCCCHHHHHHHHHhhcc----
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY-GSEKIVLKPRKKKLGLGTAYMHGLKYAT----  285 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~i~~~~~~~n~g~~~a~n~g~~~a~----  285 (435)
                      ....+..+++.+.+    ....-+|+||-+...   .+.+++....+ ....+.++..  ..+...++..|++...    
T Consensus        31 Gkpll~~~l~~~~~----~~~~~~ivvv~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~l~~~~~  101 (246)
T 3f1c_A           31 GKPIIVHTVEKFIL----NTRFDKILISSPKEW---MNHAEDNIKKYISDDRIVVIEG--GEDRNETIMNGIRFVEKTYG  101 (246)
T ss_dssp             TEEHHHHHHHHHHT----CTTCSEEEEEECGGG---HHHHHHHHHHHCCCTTEEEEEC--CSSHHHHHHHHHHHHHHHTC
T ss_pred             CeeHHHHHHHHHHc----CCCCCEEEEEeCHHH---HHHHHHHHHHhCCCCCEEEECC--CCchHHHHHHHHHHHhhhhc
Confidence            34555666655533    111237777754322   22223332222 1223444433  2356777888887653    


Q ss_pred             ---CCEEEEEeCCC-CCCCccHHHHHHHHhcCCC
Q psy3650         286 ---GNFIIIMDADL-SHHPKFIPEMIKLQQQENL  315 (435)
Q Consensus       286 ---~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~~  315 (435)
                         .++++++|+|. .++++.+.++++.+.+.+.
T Consensus       102 ~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a  135 (246)
T 3f1c_A          102 LTDDDIIVTHDAVRPFLTHRIIEENIDAALETGA  135 (246)
T ss_dssp             CCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSE
T ss_pred             CCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCC
Confidence               59999999998 5899999999999876543

>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*

Probab=87.02  E-value=0.91  Score=39.11  Aligned_cols=70  Identities=10%  Similarity=0.015  Sum_probs=45.5

Q ss_pred             CeEEEEEeCCC--CcChHHHHHHHHHHhCCceEEEccC--CCCC------------CHHHHHHHHHhhcc----------
Q psy3650           7 PYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPR--KKKL------------GLGTAYMHGLKYAT----------   60 (435)
Q Consensus         7 ~~EiivvDd~S--~d~t~~i~~~~~~~~~~~~i~~~~~--~~n~------------g~~~a~n~gl~~a~----------   60 (435)
                      +.-+|||+|+.  ++.+.+++++..     +...++..  ..+.            -....+|.||++.+          
T Consensus        51 ~L~WIVVEd~~~~t~~va~lL~rsG-----l~y~HL~~~~p~~~~~~~~dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~  125 (281)
T 3cu0_A           51 RLHWLLVEDAEGPTPLVSGLLAASG-----LLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEK  125 (281)
T ss_dssp             SEEEEEEESSSSCCHHHHHHHHHHC-----SEEEEEECCCC-----------CCCCCSHHHHHHHHHHHTTCCCEEEECC
T ss_pred             ceEEEEEcCCCCCCHHHHHHHHHcC-----CceEEeccCCCccccccccccccccchhHHHHHHHHHHHHhhccccchhc
Confidence            68899999974  455666666542     33333322  2221            11466999998776          


Q ss_pred             -------CCEEEEEcCCCCCCCCcHHHH
Q psy3650          61 -------GNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus        61 -------gd~i~~lD~D~~~~~~~l~~~   81 (435)
                             .-+|.|.|+|..++-+.+++|
T Consensus       126 ~~~~~~~~GVVyFADDDNtYsl~LFdem  153 (281)
T 3cu0_A          126 DPPPPGTQGVVYFADDDNTYSRELFEEM  153 (281)
T ss_dssp             SCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             cccccCCceeEEEecCCCcccHHHHHHh
Confidence                   257899999999888777763

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=86.87  E-value=2.9  Score=35.28  Aligned_cols=51  Identities=18%  Similarity=0.175  Sum_probs=39.6

Q ss_pred             CCHHHHHHHHHhhc-cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650          46 LGLGTAYMHGLKYA-TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT   96 (435)
Q Consensus        46 ~g~~~a~n~gl~~a-~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~   96 (435)
                      .+...++..|+... ..|+++++++|. .++++.+..+++...+.+++.++..
T Consensus        79 ~~~~~~v~~al~~~~~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~  131 (229)
T 1qwj_A           79 STSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV  131 (229)
T ss_dssp             CCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred             CcHHHHHHHHHHhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence            34456777888877 579999999999 4688999999998877777765544

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=86.82  E-value=2.6  Score=35.66  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=36.5

Q ss_pred             CCHHHHHHHHHhhcc-CCEEEEEeCCCC-CCCccHHHHHHHHhcCC
Q psy3650         271 LGLGTAYMHGLKYAT-GNFIIIMDADLS-HHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~-~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~  314 (435)
                      .|...++..|++... .++++++++|.. ++++.+..+++.+.+.+
T Consensus        83 ~g~~~~i~~al~~~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~  128 (236)
T 1i52_A           83 DERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSR  128 (236)
T ss_dssp             SSHHHHHHHHHHTSTTCSEEEECCTTCTTCCHHHHHHHHGGGGTCS
T ss_pred             CCHHHHHHHHHHhcCCCCEEEEEcCccccCCHHHHHHHHHHHHhcC
Confidence            578888999998874 699999999985 78889999998775544

>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*

Probab=85.48  E-value=0.94  Score=38.57  Aligned_cols=72  Identities=11%  Similarity=0.049  Sum_probs=47.6

Q ss_pred             CCeEEEEEeCCC--CcChHHHHHHHHHHhCCceEEEccCC--CC------------CCHHHHHHHHHhhcc---------
Q psy3650           6 YPYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRK--KK------------LGLGTAYMHGLKYAT---------   60 (435)
Q Consensus         6 ~~~EiivvDd~S--~d~t~~i~~~~~~~~~~~~i~~~~~~--~n------------~g~~~a~n~gl~~a~---------   60 (435)
                      .+.-.|||+|+.  ++.+.+++++..     +...++...  .+            .-....+|.||++.+         
T Consensus        32 p~L~WIVVEd~~~~t~~va~lL~~sg-----l~y~HL~~~~p~~~~~~~~~~~~~~~rg~~qRn~AL~~Ir~~~~~~~~~  106 (253)
T 1v84_A           32 PNLHWLVVEDAPRRTPLTARLLRDTG-----LNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQ  106 (253)
T ss_dssp             SSEEEEEEESSSSCCHHHHHHHHHHC-----CEEEEEECCCCHHHHCC-------CCTTHHHHHHHHHHHHHHSCSSSCC
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHcC-----CceEEeecCCCccccccccccCccccchHHHHHHHHHHHHHhccccccc
Confidence            368899999965  456667776653     333333222  11            012467999998765         


Q ss_pred             CCEEEEEcCCCCCCCCcHHHHH
Q psy3650          61 GNFIIIMDADLSHHPKFIPEMI   82 (435)
Q Consensus        61 gd~i~~lD~D~~~~~~~l~~~~   82 (435)
                      ..+|.|.|+|..++-+.+++|-
T Consensus       107 ~GVVyFADDdNtYdl~LF~emR  128 (253)
T 1v84_A          107 PGVVYFADDDNTYSLELFEEMR  128 (253)
T ss_dssp             CEEEEECCTTSEECHHHHHHHH
T ss_pred             ceeEEEecCCCcccHHHHHHHh
Confidence            3688999999998887777744

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=84.74  E-value=0.87  Score=37.37  Aligned_cols=79  Identities=19%  Similarity=0.235  Sum_probs=49.9

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc--cCCEEEEEcCCCC-CCCCcHHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADLS-HHPKFIPEMIKL   84 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a--~gd~i~~lD~D~~-~~~~~l~~~~~~   84 (435)
                      -+|+||-+...    +.++++.... ...++.. .....|.+.+...|++..  ..++++++++|.. ++++.+..+++.
T Consensus        47 ~~i~vv~~~~~----~~~~~~~~~~-~~~~~~~-~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~  120 (199)
T 2waw_A           47 DQLIVTLGGAA----DEVLEKVELD-GLDIVLV-DDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIAG  120 (199)
T ss_dssp             SEEEEEECTTH----HHHHHHSCCT-TSEEEEC-CCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHHH
T ss_pred             CcEEEEeCCCH----HHHHHHhccC-CCEEEEC-CCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHhh
Confidence            46777754321    2233332222 2344432 233457778888999887  5699999999995 588899999987


Q ss_pred             HhcCCCcEEE
Q psy3650          85 QQQENLDVVT   94 (435)
Q Consensus        85 ~~~~~~~~v~   94 (435)
                        +.++++++
T Consensus       121 --~~~~~~~~  128 (199)
T 2waw_A          121 --GRGATIAV  128 (199)
T ss_dssp             --HTTCSEEE
T ss_pred             --cCCCCEEE
Confidence              34556554

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=84.70  E-value=2.9  Score=37.14  Aligned_cols=106  Identities=10%  Similarity=-0.012  Sum_probs=62.5

Q ss_pred             Eecc-CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCC-cchHHHHHHHHHHhC-CceEEEecCC--------------
Q psy3650         206 LPTY-NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSP-DGTLDAAKQLQSIYG-SEKIVLKPRK--------------  268 (435)
Q Consensus       206 ip~~-n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~-~~~i~~~~~~--------------  268 (435)
                      +|.- +....+..+++.+.+.    . .-+|+||-.... +...+.   +....+ ...+..+..+              
T Consensus        26 ~~ig~~g~pli~~~l~~~~~~----~-~~~i~vv~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   97 (303)
T 3pnn_A           26 DGIGPGGDTIMDYSVYDAIRA----G-FGRLVFVIRHSFEKEFREK---ILTKYEGRIPVELVFQELDRLPEGFSCPEGR   97 (303)
T ss_dssp             CCCSTTSCCHHHHHHHHHHHH----T-CCEEEEEECGGGHHHHHHH---THHHHTTTSCEEEEECCTTCCCTTCCCCTTC
T ss_pred             eEcCCCCeeHHHHHHHHHHHC----C-CCeEEEEcCchHHHHHHHH---HHHHhccCCcEEEEecccccccccccccccc
Confidence            4543 3446667777666442    1 237777765321 222222   222221 2344444333              


Q ss_pred             -CCCCHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc---CCCceEEe
Q psy3650         269 -KKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ---ENLDVVTG  320 (435)
Q Consensus       269 -~n~g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~---~~~~~v~~  320 (435)
                       +..|.+.|+..+......+ ++++++|..++++.+..+++...+   .+.++.+.
T Consensus        98 ~~~~Gt~~al~~a~~~i~~~-~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~  152 (303)
T 3pnn_A           98 EKPWGTNHAVLMGRDAIREP-FAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMV  152 (303)
T ss_dssp             CSCCCHHHHHHTTTTTCCSC-EEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEE
T ss_pred             cccCCcHHHHHHHHHhcCCC-EEEEECCeecCHHHHHHHHHHHHHhccccCceEEE
Confidence             4678999999988887544 566789999888889999998764   34454443

>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}

Probab=84.39  E-value=1.6  Score=37.06  Aligned_cols=71  Identities=11%  Similarity=0.113  Sum_probs=45.1

Q ss_pred             CeEEEEEeCCCCcC--hHHHHHHHHHHhCCceEEEccCC--CCC------CHHHHHHHHHhhcc---------CCEEEEE
Q psy3650           7 PYEIIVIDDGSPDG--TLDAAKQLQSIYGSEKIVLKPRK--KKL------GLGTAYMHGLKYAT---------GNFIIIM   67 (435)
Q Consensus         7 ~~EiivvDd~S~d~--t~~i~~~~~~~~~~~~i~~~~~~--~n~------g~~~a~n~gl~~a~---------gd~i~~l   67 (435)
                      +.-+|||+|+..-.  +.+++++.     .+...++...  .++      .....+|.||++.+         ..+|.|.
T Consensus        33 ~l~WIVVEd~~~~~~~v~~lL~~s-----gl~y~HL~~~~~~~~~~~~~prg~~qRn~AL~~Ir~~~~~~~~~~GVVyFA  107 (246)
T 2d0j_A           33 QLHWILVEDAAARSELVSRFLARA-----GLPSTHLHVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFA  107 (246)
T ss_dssp             TEEEEEEESSSSCCHHHHHHHHHS-----CSCEEEEECCCCCC----CCCCCHHHHHHHHHHHHHHSCSSSCCCCEEEEC
T ss_pred             ceEEEEEcCCCCCCHHHHHHHHHc-----CCceEEEecCCccccCCCCCcchHHHHHHHHHHHHHhcccccCccceEEEc
Confidence            47899999977432  34555543     3334333222  221      12377999997754         3689999


Q ss_pred             cCCCCCCCCcHHHHH
Q psy3650          68 DADLSHHPKFIPEMI   82 (435)
Q Consensus        68 D~D~~~~~~~l~~~~   82 (435)
                      |+|..++-+.+++|-
T Consensus       108 DDdNtY~l~LF~emR  122 (246)
T 2d0j_A          108 DDDNTYSLELFQEMR  122 (246)
T ss_dssp             CTTCEECTHHHHHHT
T ss_pred             cCCCcccHHHHHHHh
Confidence            999999988777744

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=84.17  E-value=7.8  Score=32.41  Aligned_cols=75  Identities=11%  Similarity=0.017  Sum_probs=48.4

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhc-------cCCEEEEEcCCC-CCCCCcHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-------TGNFIIIMDADL-SHHPKFIP   79 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a-------~gd~i~~lD~D~-~~~~~~l~   79 (435)
                      -+|+||-+...+...+ +.+    .....+.++  .+..|.+.+...|+...       ..++++++++|. .++++.+.
T Consensus        51 ~~ivvv~~~~~~~~~~-~~~----~~~~~i~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~  123 (231)
T 1vgw_A           51 DLTVVVVSPEDTFADK-VQT----AFPQVRVWK--NGGQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALA  123 (231)
T ss_dssp             CEEEEECCTTCSTHHH-HHH----HCTTSEEEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHH
T ss_pred             CeEEEEECccHHHHHH-HHh----cCCCceEEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHH
Confidence            4777775433332222 222    211234443  34567888888888776       469999999998 56888999


Q ss_pred             HHHHHHhcCC
Q psy3650          80 EMIKLQQQEN   89 (435)
Q Consensus        80 ~~~~~~~~~~   89 (435)
                      .+++...+.+
T Consensus       124 ~l~~~~~~~~  133 (231)
T 1vgw_A          124 RLIEQAGNAA  133 (231)
T ss_dssp             HHHHHHTTCT
T ss_pred             HHHHHHhhcC
Confidence            9999885544

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=84.00  E-value=3.3  Score=36.55  Aligned_cols=104  Identities=15%  Similarity=0.126  Sum_probs=61.6

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|.++ ...+...++.+...    . --+|+||..+...   +.++++....  -++.+.+...+...|.+.++..|++.
T Consensus        28 lpi~g-kpli~~~l~~l~~~----g-i~~I~vv~~~~~~---~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~   98 (293)
T 1fxo_A           28 LPVYD-KPMIYYPLSTLMLA----G-IREILIISTPQDT---PRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESF   98 (293)
T ss_dssp             SEETT-EETTHHHHHHHHHT----T-CCEEEEEECTTTH---HHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHH
T ss_pred             CeECC-EeHHHHHHHHHHHC----C-CCEEEEEeccccH---HHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHH
Confidence            44454 35677777766542    1 2377777543221   2233332221  12355555555667888898888887


Q ss_pred             ccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceE
Q psy3650         284 ATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVV  318 (435)
Q Consensus       284 a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v  318 (435)
                      ...+-++++.+|..+....+.++++...+.+.+.+
T Consensus        99 i~~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~  133 (293)
T 1fxo_A           99 IGNDLSALVLGDNLYYGHDFHELLGSASQRQTGAS  133 (293)
T ss_dssp             HTTSEEEEEETTEEEECTTHHHHHHHHHTCCSSEE
T ss_pred             hCCCCEEEEECChhccCccHHHHHHHHHhcCCCcE
Confidence            76666666669987544678999988754444443

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=83.76  E-value=6.3  Score=33.10  Aligned_cols=44  Identities=14%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             CCHHHHHHHHHhhc----c---CCEEEEEeCCC-CCCCccHHHHHHHHhcCC
Q psy3650         271 LGLGTAYMHGLKYA----T---GNFIIIMDADL-SHHPKFIPEMIKLQQQEN  314 (435)
Q Consensus       271 ~g~~~a~n~g~~~a----~---~d~v~~~d~D~-~~~~~~l~~~~~~~~~~~  314 (435)
                      .|...++..|+...    .   .++++++++|. .++++.+..+++.+.+.+
T Consensus        84 ~~~~~~i~~~l~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~  135 (236)
T 2vsh_A           84 ADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHD  135 (236)
T ss_dssp             SSHHHHHHHHHHHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSS
T ss_pred             CchHHHHHHHHHHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcC
Confidence            46778888888876    2   48999999999 588899999999886544

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=83.36  E-value=1.8  Score=37.87  Aligned_cols=56  Identities=20%  Similarity=0.154  Sum_probs=44.9

Q ss_pred             ceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCC----cHHHHHHHHhcCCC
Q psy3650          35 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPK----FIPEMIKLQQQENL   90 (435)
Q Consensus        35 ~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~----~l~~~~~~~~~~~~   90 (435)
                      ..+.+.......|.++++..|+.....+.++++.+|..++++    .+..+++...+.++
T Consensus        95 ~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~  154 (281)
T 3juk_A           95 CCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC  154 (281)
T ss_dssp             CEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS
T ss_pred             ccEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC
Confidence            356555556678999999999988877889999999988888    79999998766555

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=83.27  E-value=3.3  Score=39.07  Aligned_cols=89  Identities=11%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             CCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhcc-CCEEE
Q psy3650         212 KENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT-GNFII  290 (435)
Q Consensus       212 ~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~-~d~v~  290 (435)
                      ...+..+++.+.+.    . .-+|+++-+..    .+.++++.... .  +.++..+...|.+.++..+++... .++++
T Consensus        33 kpli~~~l~~l~~~----~-~~~iivv~~~~----~~~i~~~~~~~-~--~~~v~~~~~~g~~~~~~~~~~~~~~~~~vl  100 (456)
T 2v0h_A           33 KPMVKHVIDTAHQL----G-SENIHLIYGHG----GDLMRTHLANE-Q--VNWVLQTEQLGTAHAVQQAAPFFKDNENIV  100 (456)
T ss_dssp             EEHHHHHHHHHHHT----T-CSCEEEEECTT----HHHHHHHTTTC-C--CEEEECSCCCCHHHHHHHHGGGCCTTSEEE
T ss_pred             ccHHHHHHHHHHhC----C-CCcEEEEeCCC----HHHHHHHhhcC-C--cEEEeCCCCCCcHHHHHHHHHhcCCCCeEE
Confidence            34555556555442    1 12666665432    12233332221 2  333334556788899999998875 69999


Q ss_pred             EEeCCCC-CCCccHHHHHHHHhc
Q psy3650         291 IMDADLS-HHPKFIPEMIKLQQQ  312 (435)
Q Consensus       291 ~~d~D~~-~~~~~l~~~~~~~~~  312 (435)
                      ++++|.. +++..+.++++...+
T Consensus       101 v~~~D~P~i~~~~i~~l~~~~~~  123 (456)
T 2v0h_A          101 VLYGDAPLITKETLEKLIEAKPE  123 (456)
T ss_dssp             EEETTCTTCCHHHHHHHHHHCCT
T ss_pred             EEcCCcceeCHHHHHHHHHHHhc
Confidence            9999995 788899999988754

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=83.04  E-value=9.4  Score=31.66  Aligned_cols=88  Identities=15%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc-cCCEE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA-TGNFI  289 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a-~~d~v  289 (435)
                      ....+..+++.+.+.   .. .-+|+|+-+...   .+.++++.. ..  .+.++..  ..+.+.++..|++.. ..+++
T Consensus        29 g~pli~~~l~~l~~~---~~-~~~i~vv~~~~~---~~~~~~~~~-~~--~v~~~~~--~~~~~~~i~~al~~~~~~~~v   96 (223)
T 2xwl_A           29 GTPLLEHALSGLRAS---GV-IDRIVIAVPPAL---TDESKLVFG-GE--DSVIVSG--GVDRTESVALALEAAGDAEFV   96 (223)
T ss_dssp             TEEHHHHHHHHHHHH---SC-CSEEEEEECGGG---HHHHHHHTC-BT--TEEEEEC--CSSHHHHHHHHHTTCTTCSEE
T ss_pred             CeEHHHHHHHHHhcC---CC-CCeEEEEEcccH---HHHHHHHhc-cC--CeEEEcC--CCCHHHHHHHHHHhcCCCCEE
Confidence            445566667666542   10 127777754321   222333221 12  3444433  245688889999887 67999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHH
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQ  310 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~  310 (435)
                      +++++|.. ++++.+..+++.+
T Consensus        97 lv~~~D~P~~~~~~i~~l~~~~  118 (223)
T 2xwl_A           97 LVHDAARALTPPALIARVVAAL  118 (223)
T ss_dssp             EECCTTCTTCCHHHHHHHHHHH
T ss_pred             EEEcCCcccCCHHHHHHHHHHH
Confidence            99999994 7888999999987

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=82.64  E-value=5.2  Score=34.38  Aligned_cols=78  Identities=13%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhcc---CCEEEEEcCCC-CCCCCcHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYAT---GNFIIIMDADL-SHHPKFIPEMIK   83 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~---gd~i~~lD~D~-~~~~~~l~~~~~   83 (435)
                      -+|+|+-|.      +.+.+..+.+ ...+.+.......|. .+...|++...   .|+++++++|. .++|+.+..+++
T Consensus        43 ~~vvVvt~~------~~i~~~~~~~-g~~v~~~~~~~~~Gt-~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~li~  114 (253)
T 4fcu_A           43 DDLCVATDD------ERIAEICRAE-GVDVVLTSADHPSGT-DRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQVAK  114 (253)
T ss_dssp             CEEEEEESC------HHHHHHHHTT-TCCEEECCTTCCCHH-HHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHHHH
T ss_pred             CEEEEECCH------HHHHHHHHHc-CCeEEEeCCCCCChH-HHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHHHH
Confidence            577777542      2334444333 234554332333343 45666776653   58999999999 678899999999


Q ss_pred             HHhcC-CCcEE
Q psy3650          84 LQQQE-NLDVV   93 (435)
Q Consensus        84 ~~~~~-~~~~v   93 (435)
                      .+.+. +.+++
T Consensus       115 ~~~~~~~~~~a  125 (253)
T 4fcu_A          115 LLVDKPNCSMS  125 (253)
T ss_dssp             HHHHCTTCSEE
T ss_pred             HHHhCCCCCEE
Confidence            98765 34443

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=82.14  E-value=3.9  Score=33.63  Aligned_cols=48  Identities=13%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             CCHHHHHHHHHhhccCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEE
Q psy3650          46 LGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTG   95 (435)
Q Consensus        46 ~g~~~a~n~gl~~a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g   95 (435)
                      .|...+...|++....++++++++|. .++++.+..+++.  +.+.++++.
T Consensus        77 ~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~~~  125 (201)
T 1e5k_A           77 PGPLAGMLSVMQQEAGEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVVWV  125 (201)
T ss_dssp             CSHHHHHHHHHHHCCSSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEEEE
T ss_pred             CCHHHHHHHHHHhCCCCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEEEE
Confidence            68899999999998889999999999 6789999999986  455666554

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=82.00  E-value=1.2  Score=36.45  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             CCCHHHHHHHHHhhc--cCCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEE
Q psy3650          45 KLGLGTAYMHGLKYA--TGNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVT   94 (435)
Q Consensus        45 n~g~~~a~n~gl~~a--~gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~   94 (435)
                      ..|.+.+...|++..  ..++++++++|. .++++.+..+++.  +.+.++++
T Consensus        78 ~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~  128 (197)
T 2wee_A           78 ERGCAASLRVALARVHPRATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMV  128 (197)
T ss_dssp             --CCHHHHHHHHTTSCTTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEE
T ss_pred             ccCHHHHHHHHHHHhcccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEE
Confidence            457888999999887  468999999999 5688899999987  34445543

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=81.71  E-value=12  Score=30.54  Aligned_cols=96  Identities=9%  Similarity=0.081  Sum_probs=58.7

Q ss_pred             CcceEEEEeccCCCCChH--HH---------HHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC
Q psy3650         199 KNKYTVLLPTYNEKENLP--II---------VYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR  267 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~--~~---------l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~  267 (435)
                      ++++.+||++-.....+.  +.         ++...+.+...  .-+|+|+-+....      +.+.    ++.++.- .
T Consensus        12 ~~~~~~iILA~G~g~Rmg~~K~ll~i~g~pll~~~l~~l~~~--~~~i~vv~~~~~~------~~~~----~~~~v~~-~   78 (201)
T 2e8b_A           12 SKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSV--FKEVYIVAKDREK------FSFL----NAPVVLD-E   78 (201)
T ss_dssp             CSCCEEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHTT--CSEEEEEESCSGG------GGGG----TCCEEEC-C
T ss_pred             ccCceEEEECCCCCccCCCCcccceECceEHHHHHHHHHHHh--CCEEEEEeCcHHH------hhcC----CceEEec-C
Confidence            345777888877666552  22         22222223322  2377777543322      1111    2344332 2


Q ss_pred             CCCCCHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHH-HH
Q psy3650         268 KKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPE-MI  307 (435)
Q Consensus       268 ~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~-~~  307 (435)
                      ....|.+.++..|++....+.++++++|.. ++++.+.. ++
T Consensus        79 ~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           79 FEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             CSSCCHHHHHHHHHHHCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            235689999999999888899999999996 68888888 76

>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19

Probab=81.65  E-value=5.2  Score=33.71  Aligned_cols=88  Identities=8%  Similarity=0.121  Sum_probs=58.3

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....+..+++.+.+.    . . +|+|+-+.  +..    +++.      .+.+   +...|.+.++..|++... +.+
T Consensus        30 ~g~pll~~~l~~l~~~----~-~-~ivvv~~~--~~i----~~~~------~~~~---~~~~g~~~~i~~a~~~~~-~~~   87 (232)
T 2dpw_A           30 RGRPMVEWVLEALYAA----G-L-SPVYVGEN--PGL----VPAP------ALTL---PDRGGLLENLEQALEHVE-GRV   87 (232)
T ss_dssp             TTEETHHHHHHHHHHT----T-C-EEEEESCC--SSC----SSCC------SEEE---CCCSSHHHHHHHHHHTCC-SEE
T ss_pred             CCEEHHHHHHHHHHhc----C-C-EEEEEeCh--HHH----hhhc------CeEe---cCCCCHHHHHHHHHHHcC-CCE
Confidence            3456777777776542    1 2 88887332  221    1110      2333   345688999999998877 999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhcCCCceEEee
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQENLDVVTGT  321 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~  321 (435)
                      +++++|.. ++++.+..+++ . ..+.+++++.
T Consensus        88 lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~  118 (232)
T 2dpw_A           88 LVATGDIPHLTEEAVRFVLD-K-APEAALVYPI  118 (232)
T ss_dssp             EEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEE
T ss_pred             EEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEE
Confidence            99999995 78889999998 4 4455666554

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=81.54  E-value=7.3  Score=37.29  Aligned_cols=89  Identities=17%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccC---CEEEEEcCCC-CCCCCcHHHHHH
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATG---NFIIIMDADL-SHHPKFIPEMIK   83 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~g---d~i~~lD~D~-~~~~~~l~~~~~   83 (435)
                      -||+||-.--.+.-.+.+.++..... ..+.++.+++..|.++|...++.....   +.++++.+|+ .+.++.+..|++
T Consensus        56 ~~i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~~~q~~~lGTa~Av~~a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~  134 (501)
T 3st8_A           56 QRLIVVLGHDHQRIAPLVGELADTLG-RTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLADLIA  134 (501)
T ss_dssp             SEEEEEECTTHHHHHHHHHHHHHHHT-SCCEEEECSSCCCHHHHHHHHHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCCcHHHHHHHHHHhccccccceeeecCcceeecHHHHHHHHH
Confidence            46777754332323333333333332 345555567778999999999988754   4567777776 667788999998


Q ss_pred             HHhcCCCcEEEEee
Q psy3650          84 LQQQENLDVVTGTR   97 (435)
Q Consensus        84 ~~~~~~~~~v~g~~   97 (435)
                      ...+.+.++.+...
T Consensus       135 ~h~~~~~~~ti~~~  148 (501)
T 3st8_A          135 THRAVSAAVTVLTT  148 (501)
T ss_dssp             HHHHTTCSEEEEEE
T ss_pred             HHhhccccceEeee
Confidence            87777777655443

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=80.94  E-value=6.6  Score=34.59  Aligned_cols=103  Identities=13%  Similarity=0.187  Sum_probs=59.6

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|.++ ...+...++.+...    . --+|+||.....  . +.++++....  -++.+.++..+...|.+.++..|++.
T Consensus        29 lpi~g-kpli~~~l~~l~~~----g-i~~Iivv~~~~~--~-~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~   99 (295)
T 1lvw_A           29 LPIYD-KPMIYYPLSVLMLA----G-IRDILIISTPRD--L-PLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDF   99 (295)
T ss_dssp             SEETT-EETTHHHHHHHHHT----T-CCEEEEEECTTT--H-HHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHH
T ss_pred             cEECC-eeHHHHHHHHHHHC----C-CCeEEEEeccch--H-HHHHHHhhhccccCceEEEeeCCCCCChHHHHHHHHHH
Confidence            45555 46677777766541    1 237777754222  1 2233333221  12345555455567888888888887


Q ss_pred             ccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceE
Q psy3650         284 ATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVV  318 (435)
Q Consensus       284 a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v  318 (435)
                      ... +++++. +|..+....+.++++...+.+.+.+
T Consensus       100 i~~~~~~lv~-gD~~~~~~~l~~~l~~~~~~~~~~~  134 (295)
T 1lvw_A          100 IGDSKVALVL-GDNVFYGHRFSEILRRAASLEDGAV  134 (295)
T ss_dssp             HTTSCEEEEE-TTCCEECTTHHHHHHHHHTCCSSEE
T ss_pred             hCCCcEEEEE-CCccccCcCHHHHHHHHHHcCCCcE
Confidence            654 555555 9987544678999987754444443

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=80.76  E-value=1.9  Score=36.29  Aligned_cols=52  Identities=12%  Similarity=0.110  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHhhcc--CCEEEEEcCCC-CCCCCcHHHHHHHHhcCCCcEEEEe
Q psy3650          45 KLGLGTAYMHGLKYAT--GNFIIIMDADL-SHHPKFIPEMIKLQQQENLDVVTGT   96 (435)
Q Consensus        45 n~g~~~a~n~gl~~a~--gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~g~   96 (435)
                      ..|...+...|++...  .|+++++++|. .+++..+..+++...+.++++++..
T Consensus        79 ~~g~~~sv~~~l~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~  133 (228)
T 1ezi_A           79 TASSISGVIHALETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA  133 (228)
T ss_dssp             -CHHHHHHHHHHHHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE
T ss_pred             CCChHHHHHHHHHHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence            4466777888888773  58999999998 4678899999987765555655443

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=80.15  E-value=1.4  Score=36.20  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=52.1

Q ss_pred             CCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCC-ceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         211 EKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS-EKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       211 ~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      ....+..+++.+.+    .. --+|+|+-+...+...+.+.+   .++. ..+.++.. ...|.+.++..|++.. .+.+
T Consensus        26 g~pli~~~l~~l~~----~~-~~~v~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~~-~~~g~~~si~~al~~~-~~~v   95 (196)
T 3rsb_A           26 GRCLIDYVVSPLLK----SK-VNNIFIATSPNTPKTKEYINS---AYKDYKNIVVIDT-SGKGYIEDLNECIGYF-SEPF   95 (196)
T ss_dssp             TEEHHHHHHHHHHS----SS-CCCEEEECCTTCHHHHHHHHH---HTTTTTEEEE---------CCCCCTTTTTC-SSCE
T ss_pred             CEEHHHHHHHHHHH----CC-CCEEEEEeCCChHHHHHHHHh---hccCCCCEEEEEC-CCCCcHHHHHHHHHhC-CCCE
Confidence            34555666665543    21 236777754433333333332   1211 13444432 3455666777777777 8999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHhc
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQQ  312 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~~  312 (435)
                      +++++|.- ++++.+.++++.+.+
T Consensus        96 lv~~~D~P~i~~~~i~~l~~~~~~  119 (196)
T 3rsb_A           96 LVVSSDLINLKSKIINSIVDYFYC  119 (196)
T ss_dssp             EEEETTEESCCHHHHHHHHHHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHh
Confidence            99999984 799999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	435
d2bo4a1	381	c.68.1.18 (A:2-382) Mannosylglycerate synthase, MG	1e-21
d2bo4a1	381	c.68.1.18 (A:2-382) Mannosylglycerate synthase, MG	7e-18
d1omza_	265	c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransf	4e-14
d1omza_	265	c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransf	3e-08
d1xhba2	328	c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa	7e-09
d1xhba2	328	c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa	8e-06
d1qg8a_	255	c.68.1.1 (A:) Spore coat polysaccharide biosynthes	3e-07
d1qg8a_	255	c.68.1.1 (A:) Spore coat polysaccharide biosynthes	0.002

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Length = 381

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

 Score = 93.5 bits (232), Expect = 1e-21
 Identities = 34/227 (14%), Positives = 60/227 (26%), Gaps = 25/227 (11%)

Query: 204 VLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIV 263
           V+ P  +E   + +      +        +E++ I            +    I  +    
Sbjct: 3   VVFPFKHEHPEVLL---HNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTP 59

Query: 264 LKPRK----------KKLGLGTAYMHGLKYATGNFIIIMDADL-SHHPKFIPEMI-KLQQ 311
           +  R           K  G+ TA  + L+      I   DAD+ S  P +I +       
Sbjct: 60  VSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADF 119

Query: 312 QENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE 371
              L      R      +  W   R   +              +    G   L +++V  
Sbjct: 120 GYGLVRHYFPRASTDAMI-TWMITRTGFALLWP----HTELSWIEQPLGGELLMRREVAA 174

Query: 372 NLVSSC---VSKGYVFQMEMVIRARQYNYTIGEVPI--SFVDRVYGE 413
            L           +           Q   +I E  I      R+YG 
Sbjct: 175 MLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGG 221

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Length = 381

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

 Score = 82.3 bits (203), Expect = 7e-18
 Identities = 38/270 (14%), Positives = 67/270 (24%), Gaps = 28/270 (10%)

Query: 8   YEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRK----------KKLGLGTAYMHGLK 57
           +E++ I            +    I  +    +  R           K  G+ TA  + L+
Sbjct: 29  HEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLE 88

Query: 58  YATGNFIIIMDADL-SHHPKFIPEMI-KLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVS 115
                 I   DAD+ S  P +I +          L      R      +  W   R   +
Sbjct: 89  ETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMI-TWMITRTGFA 147

Query: 116 RGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC---VSKGYVFQMEMVIRARQYNY 172
                         +    G   L +++V   L           +           Q   
Sbjct: 148 LLWP----HTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGV 203

Query: 173 TIGEVPI--SFVDRVVFTTQAIMSGDSVKNKYTVLLPTYNEKENLPIIVYLITKYMDEGN 230
           +I E  I      R+      + +   +   +  +    +E    P I            
Sbjct: 204 SIYECYIPEGKAHRLYGGLDDLRT--MLVECFAAIQSLQHEVVGQPAIHRQE----HPHR 257

Query: 231 YPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
            P  I        + TL    Q  +    E
Sbjct: 258 VPVHIAERVGYDVEATLHRLMQHWTPRQVE 287

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.7 bits (169), Expect = 4e-14
 Identities = 17/172 (9%), Positives = 48/172 (27%), Gaps = 11/172 (6%)

Query: 200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGS 259
           + +T+++ TYN  + L  ++             +++IV+ +   +   +         G 
Sbjct: 3   DSFTLIMQTYNRTDLLLRLLNHYQAV----PSLHKVIVVWNNVGEKGPEELWNS---LGP 55

Query: 260 EKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVT 319
             I +  + +        +        N ++++D D     + +     + QQ    ++ 
Sbjct: 56  HPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIG 115

Query: 320 GTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLE 371
                                               S +      +  + LE
Sbjct: 116 FVPRK----HVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIGASFFNSKYLE 163

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 12/142 (8%), Positives = 35/142 (24%), Gaps = 7/142 (4%)

Query: 5   NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
              +++IV+ +   +   +         G   I +  + +        +        N +
Sbjct: 29  PSLHKVIVVWNNVGEKGPEELWNS---LGPHPIPVIFKPQTANKMRNRLQVFPEVETNAV 85

Query: 65  IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQL 124
           +++D D     + +     + QQ    ++                               
Sbjct: 86  LMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRK----HVSTSSGIYSYGGFELQTPGP 141

Query: 125 LLRPGVSDLTGSFRLYKKQVLE 146
                 S +      +  + LE
Sbjct: 142 GNGDQYSMVLIGASFFNSKYLE 163

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 7e-09
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 23/233 (9%)

Query: 203 TVLLPTYNEKENLPIIVYLITKYMDE--GNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
           +V++  +NE  +   ++  +   ++    +   EI+++DD S    L    +        
Sbjct: 25  SVVIVFHNEAWS--TLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKV 82

Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320
            + +   +++ GL  A + G   + G  I  +DA       ++  ++   + +   VV  
Sbjct: 83  PVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCP 142

Query: 321 TR-----------------YVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFR 363
                              Y G      + +                L      + G   
Sbjct: 143 IIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLF 202

Query: 364 LYKKQVLENL--VSSCVSKGYVFQMEMVIRARQYNYTIGEVPISFVDRVYGES 414
              +   + +    + +       +E+  R  Q   T+  V  S V  V+ ++
Sbjct: 203 SIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKA 255

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (106), Expect = 8e-06
 Identities = 27/197 (13%), Positives = 57/197 (28%), Gaps = 19/197 (9%)

Query: 5   NYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI 64
           +   EI+++DD S    L    +         + +   +++ GL  A + G   + G  I
Sbjct: 52  HMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVI 111

Query: 65  IIMDADLSHHPKFIPEMIKLQQQENLDVVTGTR-----------------YVGTGGVYGW 107
             +DA       ++  ++   + +   VV                     Y G      +
Sbjct: 112 TFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNF 171

Query: 108 DFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL--VSSCVSKGYVFQMEMVI 165
            +                L      + G      +   + +    + +       +E+  
Sbjct: 172 RWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISF 231

Query: 166 RARQYNYTIGEVPISFV 182
           R  Q   T+  V  S V
Sbjct: 232 RIWQCGGTLEIVTCSHV 248

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.0 bits (115), Expect = 3e-07
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 3/173 (1%)

Query: 201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSE 260
           K +V++ +YN+ + +      I+  + +    +E+ ++DD S + TL+  +   +     
Sbjct: 2   KVSVIMTSYNKSDYVA---KSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVR 58

Query: 261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTG 320
                    K          L               +           L+    LD    
Sbjct: 59  FYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPE 118

Query: 321 TRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENL 373
              + +        + + + +        +       +     +++  VLE +
Sbjct: 119 KAVIYSASKTYHLNENRDIVKETVRPAAQVTWNAPCAIDHCSVMHRYSVLEKV 171

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 14/142 (9%), Positives = 36/142 (25%)

Query: 7   PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIII 66
            +E+ ++DD S + TL+  +   +              K          L          
Sbjct: 30  DFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEG 89

Query: 67  MDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL 126
                +           L+    LD       + +        + + + +        + 
Sbjct: 90  EYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVT 149

Query: 127 RPGVSDLTGSFRLYKKQVLENL 148
                 +     +++  VLE +
Sbjct: 150 WNAPCAIDHCSVMHRYSVLEKV 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	435
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.96
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	99.91
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	99.84
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	99.79
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	99.76
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	99.71
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	99.61
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	99.49
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	98.63
d1fo8a_	343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	97.79
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	95.94
d1v82a_	252	Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (	92.92
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	92.89
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	92.28
d3cu0a1	261	1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo	91.53
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	91.15
d1fo8a_	343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	89.12
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	87.42
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	87.16
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	86.63
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	85.66
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	84.13
d3cu0a1	261	1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo	83.78
d1vh1a_	246	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	83.18
d1yp2a2	307	Glucose-1-phosphate adenylyltransferase small subu	81.01

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.3e-29  Score=231.49  Aligned_cols=214  Identities=15%  Similarity=0.172  Sum_probs=154.7

Q ss_pred             CCCCcceEEEEeccCCC-CChHHHHHHHHHHhhcCCCC--eEEEEEeCCCCcchH-HHHHHHHHHhCCceEEEecCCCCC
Q psy3650         196 DSVKNKYTVLLPTYNEK-ENLPIIVYLITKYMDEGNYP--YEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKL  271 (435)
Q Consensus       196 ~~~~~~isivip~~n~~-~~l~~~l~~l~~~~~~~~~~--~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~~~~~~~n~  271 (435)
                      +...|.||||||+||+. ..|.++|+++.+   |+++.  +|||||||||+|++. +.++++.+..+. ++.++.+++|.
T Consensus        18 ~~~~P~vSIIIp~yNe~~~~l~~~l~Si~~---qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~-~i~vi~~~~n~   93 (328)
T d1xhba2          18 PDNLPTTSVVIVFHNEAWSTLLRTVHSVIN---RSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKV-PVHVIRMEQRS   93 (328)
T ss_dssp             CSCCCCEEEEEEESSCCHHHHHHHHHHHHH---SSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSS-CEEEEECSSCC
T ss_pred             CCCCCCEEEEEeccCCcHHHHHHHHHHHHh---cCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCC-CeEEEEecccc
Confidence            34578999999999986 457777777755   65544  699999999999875 566776665543 68888888999


Q ss_pred             CHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCcee-------------ccchhHHH
Q psy3650         272 GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVY-------------GWDFKRKL  338 (435)
Q Consensus       272 g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~~~~~~~~  338 (435)
                      |.+.|+|.|++.|+||||+|+|+|+.+.|++|+.++..+.+++..++++..........             .+......
T Consensus        94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (328)
T d1xhba2          94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRW  173 (328)
T ss_dssp             CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEE
T ss_pred             cchHHHHHHHHhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCccccccccccccccc
Confidence            99999999999999999999999999999999999999988888777765433221100             00000000


Q ss_pred             HHHHHHHHHHHhc----CCCccccccceeeecHHHHHHhhhcccCcc-c-chhhHHHHHHHHCCCcEEEeeeEEeecccc
Q psy3650         339 VSRGANYLTQLLL----RPGVSDLTGSFRLYKKQVLENLVSSCVSKG-Y-VFQMEMVIRARQYNYTIGEVPISFVDRVYG  412 (435)
Q Consensus       339 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~-~~D~el~lr~~~~G~~i~~~p~~~~~~~~~  412 (435)
                      .............    ........|+|++++|++|+++|++.+... + +||.|||+|+.++|+++.++|.+.+.|..+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~vGgfDe~~~~~g~ED~Dl~~R~~~~G~~i~~~p~~~v~H~~~  253 (328)
T d1xhba2         174 YPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFR  253 (328)
T ss_dssp             EECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEEEEEC-
T ss_pred             cccchhhhhccccccccccccceecceeeeeeHHHHHHhCCCCCCCcCcCchHHHHHHHHHHhCCeEEEeCCeEEEEeCC
Confidence            0000011111111    112345688899999999999988766543 3 589999999999999999999888777554


Q ss_pred             c
Q psy3650         413 E  413 (435)
Q Consensus       413 ~  413 (435)
                      .
T Consensus       254 ~  254 (328)
T d1xhba2         254 K  254 (328)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=2.4e-24  Score=190.39  Aligned_cols=191  Identities=14%  Similarity=0.169  Sum_probs=137.1

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecC--------CCCC
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR--------KKKL  271 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~--------~~n~  271 (435)
                      |+|||+||+||++..++++|+++.+   |+++++|||||||||+|+|.++++++... +  ++.++..        .+|.
T Consensus         1 P~vSiiip~yN~~~~l~~~l~Si~~---Qt~~~~eiivvdd~S~d~t~~~l~~~~~~-~--~i~~~~~~~~~~~~~~~~~   74 (255)
T d1qg8a_           1 PKVSVIMTSYNKSDYVAKSISSILS---QTFSDFELFIMDDNSNEETLNVIRPFLND-N--RVRFYQSDISGVKERTEKT   74 (255)
T ss_dssp             CCEEEEEEESSCTTTHHHHHHHHHT---CSCCCEEEEEEECSCCHHHHHHHGGGGGS-T--TEEEEECCCCSHHHHHSSC
T ss_pred             CEEEEEEecCCCHHHHHHHHHHHHh---CCCCCeEEEEEECCCCccHHHHHHHhhhh-c--ccccccccccccccccccc
Confidence            7899999999999999999988754   88889999999999999999999988644 3  4555443        3688


Q ss_pred             CHHHHHHHHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhc-CCCceEEeeeEE-C-CC-ceeccchhHHHHHHHHHHHH
Q psy3650         272 GLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQ-ENLDVVTGTRYV-G-TG-GVYGWDFKRKLVSRGANYLT  347 (435)
Q Consensus       272 g~~~a~n~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~  347 (435)
                      |.+.|+|.|++.|+|||++++|+|+.+.|++|+.++..+.+ ++.+++.+.... . +. ..........        ..
T Consensus        75 g~~~a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--------~~  146 (255)
T d1qg8a_          75 RYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRP--------AA  146 (255)
T ss_dssp             HHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEEC--------CC
T ss_pred             hhcccccccccccccccccccccccccccchHHHHHHHHHhCCCCCeEeecceeeeeCCCCcEeeeeccc--------ch
Confidence            99999999999999999999999999999999999999864 467877765422 1 11 1000000000        00


Q ss_pred             HHhcCCCccccccceeeecHHHHHHhhhc-----ccCc--ccchhhHHHHHHHHCCCcEEEeeeEE
Q psy3650         348 QLLLRPGVSDLTGSFRLYKKQVLENLVSS-----CVSK--GYVFQMEMVIRARQYNYTIGEVPISF  406 (435)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~~~~--~~~~D~el~lr~~~~G~~i~~~p~~~  406 (435)
                      ..... ......+++++++++++++++..     .+..  ...+|+++++|+.. ++++.+++...
T Consensus       147 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~~-~~~~~~i~~~l  210 (255)
T d1qg8a_         147 QVTWN-APCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH-FYPFYPLDEEL  210 (255)
T ss_dssp             SCBSC-CTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT-TCCBEEEEEEE
T ss_pred             hhhhh-hcccccchhHHHHHHHHHHHHHhhCCCccccchhcchhhHHHHHHHHc-CCCEEEecCCE
Confidence            00111 11223445579999999998532     1222  22479999999864 67888877543

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.5e-21  Score=176.31  Aligned_cols=178  Identities=15%  Similarity=0.183  Sum_probs=125.7

Q ss_pred             eEEEEEeCCCCcChH-HHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHHHHHHh
Q psy3650           8 YEIIVIDDGSPDGTL-DAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQ   86 (435)
Q Consensus         8 ~EiivvDd~S~d~t~-~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~   86 (435)
                      +|||||||||+|+|. ++++++.++.+ .++++++.++|.|.++|+|.|++.|+||||+|+|+|+.+.|++|+.+++.++
T Consensus        55 ~EIIvVDdgS~d~~~~~~l~~~~~~~~-~~i~vi~~~~n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~  133 (328)
T d1xhba2          55 EEIVLVDDASERDFLKRPLESYVKKLK-VPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIK  133 (328)
T ss_dssp             EEEEEEECSCCCGGGTHHHHHHHHSSS-SCEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHH
T ss_pred             eEEEEEECCCChhhHHHHHHHHHHhcC-CCeEEEEecccccchHHHHHHHHhhhcceeeecCcccccChhHHHHHHHHHh
Confidence            699999999999975 67777766554 3577778889999999999999999999999999999999999999999998


Q ss_pred             cCCCcEEEEeeeecCCCccC-------------cccchhhhhchHHHHHHHHhCC----CccccccceehhhHHHHHHhh
Q psy3650          87 QENLDVVTGTRYVGTGGVYG-------------WDFKRKLVSRGANYLTQLLLRP----GVSDLTGSFRLYKKQVLENLV  149 (435)
Q Consensus        87 ~~~~~~v~g~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  149 (435)
                      +++..++++...........             +.....................    ......|++.+++|++++++|
T Consensus       134 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~vG  213 (328)
T d1xhba2         134 HDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIG  213 (328)
T ss_dssp             HCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTT
T ss_pred             cCCCeEEecceeeeccCceeeccCCccccccccccccccccccchhhhhccccccccccccceecceeeeeeHHHHHHhC
Confidence            88877776654322211100             0000000000011111111111    122345677889999999998


Q ss_pred             cccccc-Cc-hhhHHHHHHHHhhcceeEeeeeEeeeccc
Q psy3650         150 SSCVSK-GY-VFQMEMVIRARQYNYTIGEVPISFVDRVV  186 (435)
Q Consensus       150 ~~~~~~-~~-~~d~~l~~r~~~~g~~~~~~~~~~~~r~~  186 (435)
                      ++.... .+ .+|.|+++|+.++|+++...|.....+.+
T Consensus       214 gfDe~~~~~g~ED~Dl~~R~~~~G~~i~~~p~~~v~H~~  252 (328)
T d1xhba2         214 TYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVF  252 (328)
T ss_dssp             SCCTTSCTTCCCCSHHHHHHHHTTCEEEEEEEEEEEEEC
T ss_pred             CCCCCCcCcCchHHHHHHHHHHhCCeEEEeCCeEEEEeC
Confidence            776533 33 58999999999999999999876665543

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=99.79  E-value=3e-19  Score=161.67  Aligned_cols=196  Identities=15%  Similarity=0.059  Sum_probs=125.1

Q ss_pred             EEEEeccCCCCCh-HHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH---hCCceEEEec---CCCCCCHHH
Q psy3650         203 TVLLPTYNEKENL-PIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI---YGSEKIVLKP---RKKKLGLGT  275 (435)
Q Consensus       203 sivip~~n~~~~l-~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~~~~---~~~n~g~~~  275 (435)
                      .||||+|||+..+ ..+++    .......-.||+++||+|+|.+.++.+.....   .+......+.   ...+.|++.
T Consensus         2 lVVIP~~NEe~~il~~~v~----~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~   77 (381)
T d2bo4a1           2 LVVFPFKHEHPEVLLHNVR----VAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGD   77 (381)
T ss_dssp             EEEEECCSSCHHHHHHHHH----HHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHH
T ss_pred             EEEEEcCCCcHHHHHHHHH----HHHhCCCeeEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcH
Confidence            4899999998433 33232    22222223366666666666555544433221   1211111111   123456665


Q ss_pred             ----HHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHh
Q psy3650         276 ----AYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLL  350 (435)
Q Consensus       276 ----a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
                          |+..|++.++||+++|+|+|.. ++|+++..++..+. .++|+|.|........  + ...+.+...+...+....
T Consensus        78 g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~-~g~d~V~g~y~R~~~~--g-rvt~~l~~pll~~l~~~~  153 (381)
T d2bo4a1          78 GMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD-FGYGLVRHYFPRASTD--A-MITWMITRTGFALLWPHT  153 (381)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH-TTCSEEEEECCCCTTS--C-HHHHHTHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHh-hhcCeEEEeeccccCC--C-ceehHhhHHHHHHHhhhh
Confidence                5666667889999999999985 78999999999986 5799999844222111  0 112222333333333333


Q ss_pred             cCCCccccccceeeecHHHHHHhhhcc---cCcccchhhHHHHHHHHCCCcEEEeeeEE
Q psy3650         351 LRPGVSDLTGSFRLYKKQVLENLVSSC---VSKGYVFQMEMVIRARQYNYTIGEVPISF  406 (435)
Q Consensus       351 ~~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~D~el~lr~~~~G~~i~~~p~~~  406 (435)
                      ....+.++.||+++|+|++++.+....   ...+|++|++|+..+.++|++|.++|...
T Consensus       154 ~~~~i~dPl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~rI~EV~i~~  212 (381)
T d2bo4a1         154 ELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPE  212 (381)
T ss_dssp             SGGGCSCTTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCEEEEECTT
T ss_pred             cccccccCCcccceeeHHHHHHhhhhccccccCCcccchHHHHHHHHcCCeEEecCCCH
Confidence            344588899999999999999985432   34689999999999999999999998654

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.1e-20  Score=166.42  Aligned_cols=186  Identities=9%  Similarity=-0.012  Sum_probs=119.2

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      ..++|||||+||+++.|.++|+++.+   |++++ ++|||||+|+|++.+.+.+.....+. .++.  ..+|.|++.|+|
T Consensus         2 ~~~~tvii~tyn~~~~l~~~l~sl~~---q~~~~-~~iiV~d~~sd~~~~~i~~~~~~~~~-~~~~--~~~~~g~~~a~n   74 (265)
T d1omza_           2 LDSFTLIMQTYNRTDLLLRLLNHYQA---VPSLH-KVIVVWNNVGEKGPEELWNSLGPHPI-PVIF--KPQTANKMRNRL   74 (265)
T ss_dssp             TTCEEEEEEESSCHHHHHHHHHHHTT---STTEE-EEEEEECCTTCCCTHHHHHHTCCCSS-CEEE--EECSSCCGGGGG
T ss_pred             CCcEEEEEEcCCCHHHHHHHHHHHHc---CCCcC-eEEEEECCCCCccHHHHHHHhcccce-EEEE--ecCCCCchhhhh
Confidence            35799999999999999999998854   66666 56666666666655555544333332 2333  346889999999


Q ss_pred             HHHhhccCCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCCcccc
Q psy3650         279 HGLKYATGNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDL  358 (435)
Q Consensus       279 ~g~~~a~~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (435)
                      .|++.|+||||+++|+|+.++|++|+.+++.+++++.+.+++....................    ..............
T Consensus        75 ~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  150 (265)
T d1omza_          75 QVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFEL----QTPGPGNGDQYSMV  150 (265)
T ss_dssp             SCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEEECTTS----CCCSSSSSCCBSEE
T ss_pred             hhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceecccccccccCCcccccccccc----ccccccccccccee
Confidence            99999999999999999999999999999999887877877765433211100000000000    00001111223345


Q ss_pred             ccceeeecHHHHHHhhhcc-------cCcccchhhHHHHHHHHC
Q psy3650         359 TGSFRLYKKQVLENLVSSC-------VSKGYVFQMEMVIRARQY  395 (435)
Q Consensus       359 ~~~~~~~~r~~~~~~~~~~-------~~~~~~~D~el~lr~~~~  395 (435)
                      .++..+++|+.++..+...       ......+|.++.......
T Consensus       151 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  194 (265)
T d1omza_         151 LIGASFFNSKYLELFQKQPAAVHALIDETQNCDDIAMNFLVTRH  194 (265)
T ss_dssp             CTTEEEEETHHHHHHHTSCHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             ccceeEecHHHHHHHhhhHHHHhhhhhhhcchHHHHHHHHHHHh
Confidence            5666899999998664321       112233566666664333

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=1.5e-17  Score=146.20  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=108.9

Q ss_pred             CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccC--------CCCCCHHHHHHHHHhhccCCEEEEEcCCCCC
Q psy3650           2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPR--------KKKLGLGTAYMHGLKYATGNFIIIMDADLSH   73 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~--------~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~   73 (435)
                      .|+..++|||||||||+|+|.++++++..+ ++  +.+++.        ..+.|.++|+|.|++.|+||||+++|+|+.+
T Consensus        25 ~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~-~~--i~~~~~~~~~~~~~~~~~g~~~a~N~gi~~a~g~~i~~lD~Dd~~  101 (255)
T d1qg8a_          25 SQTFSDFELFIMDDNSNEETLNVIRPFLND-NR--VRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIY  101 (255)
T ss_dssp             TCSCCCEEEEEEECSCCHHHHHHHGGGGGS-TT--EEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCSEEEEEETTEEE
T ss_pred             hCCCCCeEEEEEECCCCccHHHHHHHhhhh-cc--cccccccccccccccccchhccccccccccccccccccccccccc
Confidence            466566999999999999999999998653 44  444333        3688999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHhcC-CCcEEEEeeee-cCCCccCcccchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhcc
Q psy3650          74 HPKFIPEMIKLQQQE-NLDVVTGTRYV-GTGGVYGWDFKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSS  151 (435)
Q Consensus        74 ~~~~l~~~~~~~~~~-~~~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (435)
                      .|++|+.+++.++++ +.++++|.... ......  ..........    ......... ...++..+++++++++++..
T Consensus       102 ~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  174 (255)
T d1qg8a_         102 MPDRLLKMVRELDTHPEKAVIYSASKTYHLNENR--DIVKETVRPA----AQVTWNAPC-AIDHCSVMHRYSVLEKVKEK  174 (255)
T ss_dssp             CTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC-----CEEEEEEECC----CSCBSCCTT-TSCGGGEEEETHHHHHHHHH
T ss_pred             ccchHHHHHHHHHhCCCCCeEeecceeeeeCCCC--cEeeeecccc----hhhhhhhcc-cccchhHHHHHHHHHHHHHh
Confidence            999999999999764 67888766432 211111  1111111000    000011111 11233468999999887431


Q ss_pred             -----ccc--cCchhhHHHHHHHHhhcceeEeee
Q psy3650         152 -----CVS--KGYVFQMEMVIRARQYNYTIGEVP  178 (435)
Q Consensus       152 -----~~~--~~~~~d~~l~~r~~~~g~~~~~~~  178 (435)
                           .+.  .....|+++++|+.+ ++.+..++
T Consensus       175 ~~~~~~~~~~~~~~~D~dl~lrl~~-~~~~~~i~  207 (255)
T d1qg8a_         175 FGSYWDESPAFYRIGDARFFWRVNH-FYPFYPLD  207 (255)
T ss_dssp             HSSSSCCCGGGSTTHHHHHHHHHTT-TCCBEEEE
T ss_pred             hCCCccccchhcchhhHHHHHHHHc-CCCEEEec
Confidence                 111  223469999999854 55555444

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=99.61  E-value=2.6e-16  Score=142.27  Aligned_cols=165  Identities=16%  Similarity=0.067  Sum_probs=111.1

Q ss_pred             eEEEEEeCCCCcChHHHHHHHHHH---hCCceEEEccC---CCCCCHHH----HHHHHHhhccCCEEEEEcCCC-CCCCC
Q psy3650           8 YEIIVIDDGSPDGTLDAAKQLQSI---YGSEKIVLKPR---KKKLGLGT----AYMHGLKYATGNFIIIMDADL-SHHPK   76 (435)
Q Consensus         8 ~EiivvDd~S~d~t~~i~~~~~~~---~~~~~i~~~~~---~~n~g~~~----a~n~gl~~a~gd~i~~lD~D~-~~~~~   76 (435)
                      .||||+||+|+|.|.++.+..++.   .+......+..   ..+.|+|.    |+..|++.|+||+|+|+|+|. .++|+
T Consensus        29 ~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe  108 (381)
T d2bo4a1          29 HEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPD  108 (381)
T ss_dssp             CEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHH
T ss_pred             eEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHHHHHHHHHHHHhCCCCEEEEEcCCcCcCCHH
Confidence            578887777777666666555432   12111111111   23456765    566667889999999999998 67899


Q ss_pred             cHHHHHHHHhcCCCcEEEEeeeecCCCccCcccchhhhhchHHHHHHHHhC----CCccccccceehhhHHHHHHhhccc
Q psy3650          77 FIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR----PGVSDLTGSFRLYKKQVLENLVSSC  152 (435)
Q Consensus        77 ~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  152 (435)
                      +++.++..+ +.++|+|.|........       ..........+...+.+    ..+.++.||+++++|++++.+....
T Consensus       109 ~i~~L~~~i-~~g~d~V~g~y~R~~~~-------grvt~~l~~pll~~l~~~~~~~~i~dPl~G~~a~~R~~~~~L~~~~  180 (381)
T d2bo4a1         109 WITKAEEAA-DFGYGLVRHYFPRASTD-------AMITWMITRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDE  180 (381)
T ss_dssp             HHHHHHHHH-HTTCSEEEEECCCCTTS-------CHHHHHTHHHHHHHHCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCH
T ss_pred             HHHHHHHHH-hhhcCeEEEeeccccCC-------CceehHhhHHHHHHHhhhhcccccccCCcccceeeHHHHHHhhhhc
Confidence            999999998 57899999853222111       01111222222233332    3478889999999999999874322


Q ss_pred             ---cccCchhhHHHHHHHHhhcceeEeeeeE
Q psy3650         153 ---VSKGYVFQMEMVIRARQYNYTIGEVPIS  180 (435)
Q Consensus       153 ---~~~~~~~d~~l~~r~~~~g~~~~~~~~~  180 (435)
                         ...+|++|.++...+.+.|++|.+++..
T Consensus       181 ~v~~~~~~G~Di~lt~~A~~~G~rI~EV~i~  211 (381)
T d2bo4a1         181 RVRRRSDWGIDTLYTFVTVQQGVSIYECYIP  211 (381)
T ss_dssp             HHHTCCSTTHHHHHHHHHHHTTCCEEEEECT
T ss_pred             cccccCCcccchHHHHHHHHcCCeEEecCCC
Confidence               3469999999999999999999998654

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=1.3e-15  Score=133.29  Aligned_cols=94  Identities=7%  Similarity=-0.031  Sum_probs=74.4

Q ss_pred             CCCCCCeEEEEEeCCCCcChHHHHHHHHHHhCCceEEEccCCCCCCHHHHHHHHHhhccCCEEEEEcCCCCCCCCcHHHH
Q psy3650           2 DEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus         2 ~~~~~~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~gl~~a~gd~i~~lD~D~~~~~~~l~~~   81 (435)
                      .+|.++.|+|||||+|+|+|.+++.+...+.+. .++.  ..+|.|+++++|.|++.|+||||+++|+|++++|++|+.+
T Consensus        26 ~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~-~~~~--~~~~~g~~~a~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l  102 (265)
T d1omza_          26 QAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPI-PVIF--KPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFA  102 (265)
T ss_dssp             TTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSS-CEEE--EECSSCCGGGGGSCCTTCCSSEEEEECTTEEECHHHHHHH
T ss_pred             HcCCCcCeEEEEECCCCCccHHHHHHHhcccce-EEEE--ecCCCCchhhhhhhHHhCCcCEEEEeCcccCCCHHHHHHH
Confidence            456677788888888887777666654433332 2232  4678899999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcEEEEeee
Q psy3650          82 IKLQQQENLDVVTGTRY   98 (435)
Q Consensus        82 ~~~~~~~~~~~v~g~~~   98 (435)
                      ++.+++++.+.+.+.+.
T Consensus       103 ~~~~~~~~~~~v~~~~~  119 (265)
T d1omza_         103 FSIWQQFPDQIIGFVPR  119 (265)
T ss_dssp             HHHHTTSTTSEEESCEE
T ss_pred             HHHHHhCCCcceecccc
Confidence            99998888788877653

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.63  E-value=8e-08  Score=81.81  Aligned_cols=152  Identities=15%  Similarity=0.151  Sum_probs=106.4

Q ss_pred             CcceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHH
Q psy3650         199 KNKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYM  278 (435)
Q Consensus       199 ~~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n  278 (435)
                      ..+++||||.+|+++.|..++..+...+.....+++|+||+...                         ...+..|..+|
T Consensus        48 ~~kvaIIIPyRdR~~hL~~fl~~l~~~L~~q~~~y~I~vieQ~~-------------------------~~~FNRg~llN  102 (271)
T d1pzta_          48 PHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAG-------------------------ESMFNRAKLLN  102 (271)
T ss_dssp             SCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECS-------------------------SSCCCHHHHHH
T ss_pred             cceEEEEEecCChHHHHHHHHHHHHHHHHhcCCCEEEEEEeccC-------------------------Ccchhhhhhhh
Confidence            56899999999999999999999998877666789999997542                         22467899999


Q ss_pred             HHHhhcc----CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcCCC
Q psy3650         279 HGLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLRPG  354 (435)
Q Consensus       279 ~g~~~a~----~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (435)
                      .|+..|.    .++++|-|-|.....+...          +...-.++... ..      ..           .......
T Consensus       103 iGf~~a~~~~~~~~~ifHDVDllP~~~~~~----------Y~~~~~p~h~~-~~------~~-----------~~~~~~~  154 (271)
T d1pzta_         103 VGFKEALKDYDYNCFVFSDVDLIPMNDHNT----------YRCFSQPRHIS-VA------MD-----------KFGFSLP  154 (271)
T ss_dssp             HHHHHHHHHSCCCEEEEECTTEEESBTTSC----------CSCCSSCEECC-CE------EG-----------GGTTSCS
T ss_pred             HHHHHhhhccCccEEEEecCCcCccccccc----------ccccccCccee-ee------cc-----------ccccccc
Confidence            9998773    4778888888765433210          00000000000 00      00           0112233


Q ss_pred             ccccccceeeecHHHHHHhhhccc-Ccccc-hhhHHHHHHHHCCCcEEEee
Q psy3650         355 VSDLTGSFRLYKKQVLENLVSSCV-SKGYV-FQMEMVIRARQYNYTIGEVP  403 (435)
Q Consensus       355 ~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~-~D~el~lr~~~~G~~i~~~p  403 (435)
                      +....||..+|+++-|++++|++. ..+++ ||.||..|+..+|+++...+
T Consensus       155 y~~~~GGv~~~~k~~f~kINGfsN~ywGWGgEDddl~~R~~~~g~~i~R~~  205 (271)
T d1pzta_         155 YVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPN  205 (271)
T ss_dssp             CTTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCC
T ss_pred             cccccceeeeecHHHHhhcCCCCccccCCccccHHHHHHHHHcCCeEEccC
Confidence            445678889999999999988764 46775 99999999999999998654

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: N-acetylglucosaminyltransferase I
domain: N-acetylglucosaminyltransferase I
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.79  E-value=4.7e-05  Score=66.29  Aligned_cols=188  Identities=15%  Similarity=0.114  Sum_probs=102.6

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEE-e------------c
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL-K------------P  266 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~-~------------~  266 (435)
                      +-+-|+|.+||+. .+.++|++|.+.- .......|+|..||+.+++.+.++.+....   ..+- .            .
T Consensus         2 ~viPVlv~a~NRP-~l~r~LesLlk~~-p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~v---~~I~~~~~~~~~~~~~~~k   76 (343)
T d1fo8a_           2 AVIPILVIACDRS-TVRRCLDKLLHYR-PSAELFPIIVSQDCGHEETAQVIASYGSAV---THIRQPDLSNIAVQPDHRK   76 (343)
T ss_dssp             CCCCEEEEESSCT-THHHHHHHHHHHC-SCTTTSCEEEEECTTCHHHHHHHHTTGGGS---EEEECSCCCCCCCCTTCGG
T ss_pred             CcccEEEEEcCHH-HHHHHHHHHHhcC-ccccCccEEEEecCCchhHHHHHHHHHHHH---HHhcCCccccceecchhhc
Confidence            3467899999997 7999999997642 123456899999999988888777664331   1110 0            0


Q ss_pred             CCCCCCHHHHHHHHHhhc----cCCEEEEEeCCCCCCCccHHHH---HHHHhcCCC-ceEEeeeEECCCceeccchhHHH
Q psy3650         267 RKKKLGLGTAYMHGLKYA----TGNFIIIMDADLSHHPKFIPEM---IKLQQQENL-DVVTGTRYVGTGGVYGWDFKRKL  338 (435)
Q Consensus       267 ~~~n~g~~~a~n~g~~~a----~~d~v~~~d~D~~~~~~~l~~~---~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~  338 (435)
                      ...|.|.+..+..|+...    ..+.++++.+|..++|+++.=+   +..+++.+. -.|.|.-  .++...   .....
T Consensus        77 ~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS~wN--dnG~~~---~~~~~  151 (343)
T d1fo8a_          77 FQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWN--DNGKEQ---MVDSS  151 (343)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCC--TTCBGG---GSCTT
T ss_pred             ccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEEEeccc--cCCCcc---cccCC
Confidence            011333333333444433    4589999999999999988554   445554443 3333321  111100   00000


Q ss_pred             HHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEee-eEEeec
Q psy3650         339 VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVP-ISFVDR  409 (435)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p-~~~~~~  409 (435)
                      .       ...++..++  ..|-..|+.|+.++++..... . ...|..|-..-+++| |.+-.| ++...+
T Consensus       152 ~-------~~~lyrs~~--fpg~GW~~~r~~W~el~~kwp-~-~~Wd~w~r~~~~rkg-r~cI~PevsRt~~  211 (343)
T d1fo8a_         152 K-------PELLYRTDF--FPGLGWLLLAELWAELEPKWP-K-AFWDDWMRRPEQRKG-RACVRPEISRTMT  211 (343)
T ss_dssp             C-------TTCEEEESS--CCCSSEEEEHHHHHHHGGGCC-S-SCHHHHHTSHHHHTT-CEEEEESSBSEEE
T ss_pred             C-------CceEEeecC--CCchhhheeHHHHHHhhhcCC-C-CCcHHhhhhHHhcCC-CeeeccCccceee
Confidence            0       000111111  234447999999999954322 2 223444333356665 444445 444444

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.94  E-value=0.0021  Score=53.94  Aligned_cols=115  Identities=12%  Similarity=0.010  Sum_probs=70.2

Q ss_pred             ceEEEccCC--CCCCHHHHHHHHHhhcc----CCEEEEEcCCCCCCCCcHHHHHHHHhcCCCcEEEEeeeecCCCccCcc
Q psy3650          35 EKIVLKPRK--KKLGLGTAYMHGLKYAT----GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWD  108 (435)
Q Consensus        35 ~~i~~~~~~--~n~g~~~a~n~gl~~a~----gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~  108 (435)
                      ..|.++.+.  .....|..+|.|+..|.    .++++|.|-|..+..+.+          .+.+        .+.+    
T Consensus        82 y~I~vieQ~~~~~FNRg~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~~----------~Y~~--------~~~p----  139 (271)
T d1pzta_          82 YGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHN----------TYRC--------FSQP----  139 (271)
T ss_dssp             EEEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTS----------CCSC--------CSSC----
T ss_pred             EEEEEEeccCCcchhhhhhhhHHHHHhhhccCccEEEEecCCcCcccccc----------cccc--------cccC----
Confidence            345555333  24678999999998885    377889999976544321          0000        0000    


Q ss_pred             cchhhhhchHHHHHHHHhCCCccccccceehhhHHHHHHhhccc-cccCc-hhhHHHHHHHHhhcceeEee
Q psy3650         109 FKRKLVSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSC-VSKGY-VFQMEMVIRARQYNYTIGEV  177 (435)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~d~~l~~r~~~~g~~~~~~  177 (435)
                        ..+. ...   .............||..+|+++-+++++++. ..-+| .+|.|+..|+...|+.+...
T Consensus       140 --~h~~-~~~---~~~~~~~~y~~~~GGv~~~~k~~f~kINGfsN~ywGWGgEDddl~~R~~~~g~~i~R~  204 (271)
T d1pzta_         140 --RHIS-VAM---DKFGFSLPYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRP  204 (271)
T ss_dssp             --EECC-CEE---GGGTTSCSCTTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCC
T ss_pred             --ccee-eec---cccccccccccccceeeeecHHHHhhcCCCCccccCCccccHHHHHHHHHcCCeEEcc
Confidence              0000 000   0011223344566888999999999996654 35666 55899999999999987654

>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: Beta-1,3-glucuronyltransferase 1, GlcAT-P
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.27  Score=39.86  Aligned_cols=100  Identities=12%  Similarity=0.071  Sum_probs=64.8

Q ss_pred             cceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCC--CcchHHHHHHHHHHhCCceEEEecCCCCC------
Q psy3650         200 NKYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRKKKL------  271 (435)
Q Consensus       200 ~~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~~~~~~~n~------  271 (435)
                      |.|-+|.|+|.+...... |..+...+..- +++..|||.|+.  ++.+.++|++.     ++..+.+....+.      
T Consensus         2 p~I~vVTPTy~R~~Q~~~-LtRLa~TL~lV-p~l~WIVVEda~~~t~~va~lL~~s-----gl~y~HL~~~~p~~~~~~~   74 (252)
T d1v82a_           2 PTIHVVTPTYSRPVQKAE-LTRMANTLLHV-PNLHWLVVEDAPRRTPLTARLLRDT-----GLNYTHLHVETPRNYKLRG   74 (252)
T ss_dssp             CEEEEEEEECCSTTHHHH-HHHHHHHHTTC-SSEEEEEEESSSSCCHHHHHHHHHH-----CCEEEEEECCCCHHHHCCC
T ss_pred             CCEEEECCCCCchhhHHH-HHHHHhHHhcC-CCceEEEEeCCCCCCHHHHHHHHHc-----CCceEeeccCCCccccccc
Confidence            678899999998765544 44555555554 689999998753  45566776664     2344333221100      


Q ss_pred             --------CHHHHHHHHHhhcc---------CCEEEEEeCCCCCCCccHHHH
Q psy3650         272 --------GLGTAYMHGLKYAT---------GNFIIIMDADLSHHPKFIPEM  306 (435)
Q Consensus       272 --------g~~~a~n~g~~~a~---------~d~v~~~d~D~~~~~~~l~~~  306 (435)
                              -....+|.|++..+         .-+|.|.|.|+.++.+.+++|
T Consensus        75 ~~~~~~~~rg~~qRn~aL~~iR~~~~~~~~~~GVVyFADDdNtYsl~lFdem  126 (252)
T d1v82a_          75 DARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEM  126 (252)
T ss_dssp             -----CCCTTHHHHHHHHHHHHHHSCTTCCCCEEEEECCTTSEECHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHhcccccCcceEEEEecCCCcccHHHHHHH
Confidence                    01257888888652         257888899999998888776

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=92.89  E-value=0.19  Score=41.10  Aligned_cols=142  Identities=11%  Similarity=0.041  Sum_probs=73.3

Q ss_pred             eEEEecCCCCCCHHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHH
Q psy3650         261 KIVLKPRKKKLGLGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLV  339 (435)
Q Consensus       261 ~i~~~~~~~n~g~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  339 (435)
                      .+... .....+.......++.....|+++.+++|.. .+++.+..++..+......................+......
T Consensus        65 ~~~~~-~~~~~~~~~~~~~~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~  143 (245)
T d1h7ea_          65 KAIMT-RNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVV  143 (245)
T ss_dssp             EEEEC-CSCCSSHHHHHHHHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEE
T ss_pred             eEEEe-cCccccccHHHHHHHHhcCCCEEEEecchhhhcccccchhhhhcccccccccccccccccccccccCCcceeec
Confidence            44443 3334455666677777778999999999996 777888888887765443332222111110000000000000


Q ss_pred             -HHHHH--------HHHHHhcCCCccccccceeeecHHHHHHhhhcccCc-ccchhhHHHHHHHHCCCcEEEeee
Q psy3650         340 -SRGAN--------YLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSK-GYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       340 -~~~~~--------~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                       .....        ...............+|..+|+++.+++........ .-.+..|+ +|+.+.|+++..++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~s~~e~~e~ie~-lr~l~ng~~I~~~~~  217 (245)
T d1h7ea_         144 VNTRQDALYFSRSPIPYPRNAEKARYLKHVGIYAYRRDVLQNYSQLPESMPEQAESLEQ-LRLMNAGINIRTFEV  217 (245)
T ss_dssp             ECTTCBEEEEESSCSSCCTTGGGCCEEEEEEEEEEEHHHHHHGGGSCCCHHHHHHTCTT-HHHHHTTCCEEEEEC
T ss_pred             cchhhhhhhhhhhhhhhhhcccccccceeeeeEEeeeccccccccccCChhhhhhhHHH-HHHHHCCCeEEEEEe
Confidence             00000        000000011122234577899999999874322111 11245555 478899999977765

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.28  E-value=0.63  Score=37.17  Aligned_cols=113  Identities=15%  Similarity=0.167  Sum_probs=67.5

Q ss_pred             cceEEEEeccCCCCChH--------------HHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEe
Q psy3650         200 NKYTVLLPTYNEKENLP--------------IIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLK  265 (435)
Q Consensus       200 ~~isivip~~n~~~~l~--------------~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~  265 (435)
                      |+|..|||+.....+++              .+++++.+    ...--+|||..|  ++...+.++.    + +..+...
T Consensus         2 ~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~k----s~~id~Iivstd--~~~i~~~~~~----~-~~~~~~~   70 (228)
T d1qwja_           2 PHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALD----AGVFQSVWVSTD--HDEIENVAKQ----F-GAQVHRR   70 (228)
T ss_dssp             CCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHH----HTCCSEEEEEES--CHHHHHHHHH----T-TCEEEEC
T ss_pred             CCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHh----cCCcceEEEecc--hhhhhhhhhh----c-Ccccccc
Confidence            78999999987766554              34444433    122236666653  2233444333    3 2344332


Q ss_pred             cCCCCCC----HHHHHHHHHhhc-cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEE
Q psy3650         266 PRKKKLG----LGTAYMHGLKYA-TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYV  324 (435)
Q Consensus       266 ~~~~n~g----~~~a~n~g~~~a-~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~  324 (435)
                      .. ...+    ....+..++..- ..++++++.+|.- ..++.+.+++..+.+.+.+.+.+....
T Consensus        71 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~~~~~~  134 (228)
T d1qwja_          71 SS-ETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRR  134 (228)
T ss_dssp             CG-GGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEEEEE
T ss_pred             cc-ccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCcccccccccc
Confidence            21 1222    234444455443 4699999999986 788999999999988888877765433

>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: 1,3-Glucuronyltransferase I (glcAT-I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.6  Score=37.82  Aligned_cols=99  Identities=11%  Similarity=0.038  Sum_probs=62.7

Q ss_pred             ceEEEEeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCC--CcchHHHHHHHHHHhCCceEEEecCC--CCC-----
Q psy3650         201 KYTVLLPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPRK--KKL-----  271 (435)
Q Consensus       201 ~isivip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~~~~~~--~n~-----  271 (435)
                      .|=+|.|+|-+...... |..+...+..- +++..|||+|+.  ++.+.++|++-     ++..+.+..+  .+.     
T Consensus         2 TIyvVTPTY~R~~Q~a~-LtRLa~TL~lV-p~l~WIVVEDa~~~t~~v~~lL~~s-----gl~y~HL~~~tp~~~~~~~~   74 (261)
T d3cu0a1           2 TIYVVTPTYARLVQKAE-LVRLSQTLSLV-PRLHWLLVEDAEGPTPLVSGLLAAS-----GLLFTHLVVLTPKAQRLREG   74 (261)
T ss_dssp             EEEEEEEECCSTTHHHH-HHHHHHHHTTS-SSEEEEEEESSSSCCHHHHHHHHHH-----CSEEEEEECCCC--------
T ss_pred             eEEEECCCCCCchhHHH-HHHHHHHHhcC-CCeeEEEEECCCCCCHHHHHHHHHc-----CCceEEeecCCchhhccccc
Confidence            46789999998765544 33444445554 579999998764  34556666553     3334433221  111     


Q ss_pred             -------CHHHHHHHHHhhcc-----------------CCEEEEEeCCCCCCCccHHHH
Q psy3650         272 -------GLGTAYMHGLKYAT-----------------GNFIIIMDADLSHHPKFIPEM  306 (435)
Q Consensus       272 -------g~~~a~n~g~~~a~-----------------~d~v~~~d~D~~~~~~~l~~~  306 (435)
                             -....+|.|++..+                 .-+|.|.|+|+.++.+.+++|
T Consensus        75 ~~~~~~prgv~qRn~aL~~ir~~~~~~~~~~~~~~~~~~GVVyFADDdNtYsl~LF~em  133 (261)
T d3cu0a1          75 EPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  133 (261)
T ss_dssp             ---CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             CcccccccCHHHHHHHHHHHHHcccccccccccccCCCceEEEEecCCCcccHHHHHHH
Confidence                   01257899999874                 257888899999998888876

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.15  E-value=0.51  Score=39.63  Aligned_cols=177  Identities=13%  Similarity=0.045  Sum_probs=99.2

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|+++. ..+...++.+...     .--||++|.+....+   .++++...  ..++++.++..+...|.+.|+..+.+.
T Consensus        27 lpi~gk-PiI~~~l~~l~~~-----Gi~ei~ii~~~~~~~---~i~~~~~~~~~~g~~I~y~~q~~~~Gta~ai~~a~~~   97 (292)
T d1fxoa_          27 LPVYDK-PMIYYPLSTLMLA-----GIREILIISTPQDTP---RFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESF   97 (292)
T ss_dssp             SEETTE-ETTHHHHHHHHHT-----TCCEEEEEECTTTHH---HHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHH
T ss_pred             CEECCE-ehHHHHHHHHHHC-----CCCEEEEEeCcCCHH---HHHHHhccccccCeEEEEccCCCCCcHHHHHHhhhhh
Confidence            566765 6788888776542     233887776654322   33333221  224578777778888999999999998


Q ss_pred             ccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc---CCCccccc
Q psy3650         284 ATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL---RPGVSDLT  359 (435)
Q Consensus       284 a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  359 (435)
                      ... ++++++.+|...+. .+.+|++...+.+.++.+......+...  ++.... ...  +...+..-   ...=....
T Consensus        98 i~~~~~~lil~dD~~~~~-dl~~ll~~h~~~~~~~~i~~~~V~~p~~--yGV~~~-d~~--~ki~~~~EKP~~p~Snla~  171 (292)
T d1fxoa_          98 IGNDLSALVLGDNLYYGH-DFHELLGSASQRQTGASVFAYHVLDPER--YGVVEF-DQG--GKAISLEEKPLEPKSNYAV  171 (292)
T ss_dssp             HTTSEEEEEETTEEEECT-THHHHHHHHHTCCSSEEEEEEECSCGGG--SEEEEE-CTT--SCEEEEEESCSSCSSSEEE
T ss_pred             cCCCceEEEEccccccCc-CHHHHHHHHHhCCCCcEEEEEECCCHHH--CeEEEE-cCC--CCEeEEEECCCCCCCCcEE
Confidence            876 46666666655554 4899998887777765554433332221  111100 000  00000000   01111235


Q ss_pred             cceeeecHHHHHHhhhcccCc-ccchhhHHHHHHHHCCC
Q psy3650         360 GSFRLYKKQVLENLVSSCVSK-GYVFQMEMVIRARQYNY  397 (435)
Q Consensus       360 ~~~~~~~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~  397 (435)
                      .|..+|+.++++-+.....+. +-.+=+|+.-.+.+.|.
T Consensus       172 ~G~Y~f~~~~~~~~~~l~~s~rgE~eitD~~~~~l~~~~  210 (292)
T d1fxoa_         172 TGLYFYDQQVVDIARDLKPSPRGELEITDVNRAYLERGQ  210 (292)
T ss_dssp             EEEEEECTTHHHHHHHCCCCTTSSCCHHHHHHHHHHTTC
T ss_pred             EEEEEEChHHHHHHHhCCCCCCCchhhHHHHHHHHHcCC
Confidence            566899999987774333333 22345677767777664

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: N-acetylglucosaminyltransferase I
domain: N-acetylglucosaminyltransferase I
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=89.12  E-value=0.21  Score=42.76  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=48.2

Q ss_pred             CeEEEEEeCCCCcChHHHHHHHHHHhCCceEEE-cc-----C-------CCCCCHH----HHHHHHHhhccCCEEEEEcC
Q psy3650           7 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVL-KP-----R-------KKKLGLG----TAYMHGLKYATGNFIIIMDA   69 (435)
Q Consensus         7 ~~EiivvDd~S~d~t~~i~~~~~~~~~~~~i~~-~~-----~-------~~n~g~~----~a~n~gl~~a~gd~i~~lD~   69 (435)
                      .++|+|..||+.+++.+.++++.++.   .++- ..     .       ..|.|.+    .|++..+..-..+.+++|.+
T Consensus        32 ~~~I~Vs~DG~~~~~~~~v~~~~~~v---~~I~~~~~~~~~~~~~~~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLED  108 (343)
T d1fo8a_          32 LFPIIVSQDCGHEETAQVIASYGSAV---THIRQPDLSNIAVQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVED  108 (343)
T ss_dssp             TSCEEEEECTTCHHHHHHHHTTGGGS---EEEECSCCCCCCCCTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEET
T ss_pred             CccEEEEecCCchhHHHHHHHHHHHH---HHhcCCccccceecchhhcccchhHHHHHHHHHHHHHhcccCCceEEEEec
Confidence            36799999999999988888875431   1111 00     0       1123333    33444444334589999999


Q ss_pred             CCCCCCCcHHHHHHHH
Q psy3650          70 DLSHHPKFIPEMIKLQ   85 (435)
Q Consensus        70 D~~~~~~~l~~~~~~~   85 (435)
                      |..+.|+++.=+-+.+
T Consensus       109 Dl~~spdFf~y~~~~l  124 (343)
T d1fo8a_         109 DLEVAPDFFEYFQATY  124 (343)
T ss_dssp             TEEECTTHHHHHHHHH
T ss_pred             CceeeHHHHHHHHHHH
Confidence            9999999885444444

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=87.42  E-value=2.3  Score=33.69  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=46.6

Q ss_pred             CeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhc--cCCEEEEEeCCCC-CCCccHHHHHH
Q psy3650         232 PYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADLS-HHPKFIPEMIK  308 (435)
Q Consensus       232 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a--~~d~v~~~d~D~~-~~~~~l~~~~~  308 (435)
                      .-+|+||.+.   ...+.++++.... ...+.++...  .....+...|+...  ..++|++.|+|.. .+++.+..++.
T Consensus        48 ~~~Iivv~~~---~~~~~~~~~~~~~-~~~~~~~~gg--~~r~~sv~~~l~~~~~~~~~Vli~d~~~P~i~~~~i~~l~~  121 (226)
T d1w77a1          48 VKEIVVVCDP---FFRDIFEEYEESI-DVDLRFAIPG--KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLK  121 (226)
T ss_dssp             EEEEEEECCG---GGTHHHHTTTTSC-SSEEEEECCC--SSHHHHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             ccceeeccch---hhhhhhhcccccc-cccccccccc--chhhhhhhhhHhhhccccccceecccccccccHHHhhhhhh
Confidence            3466666442   2234555554433 2344443221  11345566666654  4599999999986 78889999998


Q ss_pred             HHhcCCC
Q psy3650         309 LQQQENL  315 (435)
Q Consensus       309 ~~~~~~~  315 (435)
                      .....+.
T Consensus       122 ~~~~~~~  128 (226)
T d1w77a1         122 DGSAVGA  128 (226)
T ss_dssp             HHHHHSE
T ss_pred             hhhccCc
Confidence            8765443

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=87.16  E-value=1.6  Score=33.37  Aligned_cols=87  Identities=9%  Similarity=0.151  Sum_probs=56.5

Q ss_pred             CCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhCCceEEEecCCCCCCHHHHHHHHHhhccCCEE
Q psy3650         210 NEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYGSEKIVLKPRKKKLGLGTAYMHGLKYATGNFI  289 (435)
Q Consensus       210 n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~~~~~~~n~g~~~a~n~g~~~a~~d~v  289 (435)
                      +....++.+++.+.....      +|+|+-+...    +...     ....++.....+...|...+...++....++++
T Consensus        28 ~g~~ll~~~l~~l~~~~~------~ivv~~~~~~----~~~~-----~~~~~v~~d~~~~~~~~~~g~~~~~~~~~~~~v   92 (188)
T d1e5ka_          28 NGKPLWQHVADALMTQLS------HVVVNANRHQ----EIYQ-----ASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWF   92 (188)
T ss_dssp             TTEEHHHHHHHHHHHHCS------CEEEECSSSH----HHHH-----TTSCCEECCCTTCCCSHHHHHHHHHHHCCSSEE
T ss_pred             CCEehhHHHHhhhccccc------ccccccCccH----Hhhh-----hcCCCccccccccccchhHHHHHHHHhcccceE
Confidence            455556777766654322      5666643321    1111     123345444445556677888888888999999


Q ss_pred             EEEeCCCC-CCCccHHHHHHHHh
Q psy3650         290 IIMDADLS-HHPKFIPEMIKLQQ  311 (435)
Q Consensus       290 ~~~d~D~~-~~~~~l~~~~~~~~  311 (435)
                      +++.+|.- ++++.+..++....
T Consensus        93 lv~~~D~P~i~~~~i~~L~~~~~  115 (188)
T d1e5ka_          93 LFCPCDTPYIPPDLAARLNHQRK  115 (188)
T ss_dssp             EEEETTCTTCCTTHHHHHHHTCT
T ss_pred             EEeccCCCCCCHHHHHHHHHhcc
Confidence            99999986 78888888887653

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.63  E-value=1.8  Score=36.12  Aligned_cols=109  Identities=14%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHH--hCCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSI--YGSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|+. ....++.+++.+...    . .-+++||.+...   .+.++++...  ..++++.++.+++..|.+.|+..+...
T Consensus        29 l~i~-~kpii~~~l~~l~~~----g-~~~i~Iv~~~~~---~~~~~~~~~~~~~~~~~i~~v~e~~~~gta~Al~~a~~~   99 (295)
T d1lvwa_          29 LPIY-DKPMIYYPLSVLMLA----G-IRDILIISTPRD---LPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDF   99 (295)
T ss_dssp             SEET-TEETTHHHHHHHHHT----T-CCEEEEEECTTT---HHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHH
T ss_pred             CeEC-CEEHHHHHHHHHHHC----C-CCeEEEEeCccc---HHHHHHHhccchhcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4544 456788888776552    1 226777765433   2333443321  224466666677788999999888887


Q ss_pred             ccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEE
Q psy3650         284 ATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYV  324 (435)
Q Consensus       284 a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~  324 (435)
                      ... ++++++.+|.... ..+..++....+.+.++.++....
T Consensus       100 l~~~~~~li~~~d~~~~-~~~~~~~~~~~~~~~~~ti~~~~~  140 (295)
T d1lvwa_         100 IGDSKVALVLGDNVFYG-HRFSEILRRAASLEDGAVIFGYYV  140 (295)
T ss_dssp             HTTSCEEEEETTCCEEC-TTHHHHHHHHHTCCSSEEEEEEEC
T ss_pred             cCCCCEEEEeCCcceec-hhHHHHHHHHHhCCCCeEEEEEEc
Confidence            755 5777776665544 457777776666666666654433

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=85.66  E-value=1.4  Score=36.66  Aligned_cols=183  Identities=11%  Similarity=0.028  Sum_probs=95.7

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHh--CCceEEEecCCCCCCHHHHHHHHHhh
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIY--GSEKIVLKPRKKKLGLGTAYMHGLKY  283 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~~~~~~~n~g~~~a~n~g~~~  283 (435)
                      +|++|. ..+...++.+...     .--+|++|-+.-.   ...++++....  -++.+.++..++..|.+.|+..+-+.
T Consensus        27 lpi~~k-p~i~~~l~~l~~~-----gi~~i~iv~~~~~---~~~~~~~~~~g~~~gi~I~y~~Q~~plGta~Ai~~a~~f   97 (291)
T d1mc3a_          27 LPIYDK-PMIYYPLSVLMLA-----GIREILIITTPED---KGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETF   97 (291)
T ss_dssp             SEETTE-ETTHHHHHHHHHT-----TCCEEEEEECTTT---HHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHH
T ss_pred             cEECCE-ehHHHHHHHHHHc-----CCCEEEEEeCccc---HHHHHHHhCchHhhCcEEEEEECCCCCchHHHHHHHHHH
Confidence            455654 6778888777542     1238777754322   33344443211  14577777788888999999999998


Q ss_pred             ccC-CEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhcC--CCc-cccc
Q psy3650         284 ATG-NFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLLR--PGV-SDLT  359 (435)
Q Consensus       284 a~~-d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~  359 (435)
                      ... ++++++.+|.....+ +..++....+.+.++.+......+....+.--...- .+    +....-.  .+. ....
T Consensus        98 i~~~~~~lvlgddi~~~~~-~~~~l~~~~~~~~~atI~~~~V~dP~~yGVve~d~~-g~----i~~i~EKP~~p~Sn~a~  171 (291)
T d1mc3a_          98 LNGEPSCLVLGDNIFFGQG-FSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDN-FR----AISLEEKPKQPKSNWAV  171 (291)
T ss_dssp             HTTSCEEEEETTEEEECSS-CHHHHHHHTTCCSSEEEEEEECSCCSSSBBCEEETT-EE----EEECCBSCSSCSCSEEE
T ss_pred             hCCCCeEEEECCCcccCcC-HHHHHHHHHhCcCCcEEEEEECCCcccCCCceeccC-cc----eeEEEECCCCCCCCeEE
Confidence            875 466666666556655 555555554445454443333332221111000000 00    0000000  111 1234


Q ss_pred             cceeeecHHHHHHhhhcccCcc-cchhhHHHHHHHHCCC-cEEEee
Q psy3650         360 GSFRLYKKQVLENLVSSCVSKG-YVFQMEMVIRARQYNY-TIGEVP  403 (435)
Q Consensus       360 ~~~~~~~r~~~~~~~~~~~~~~-~~~D~el~lr~~~~G~-~i~~~p  403 (435)
                      .|+.+|+.++++.+.....+.+ -.+=+++.-.+.+.|. ++...+
T Consensus       172 ~GiY~f~~~v~~~~~~lk~s~rgE~EItdl~~~~l~~~~~~~~~~~  217 (291)
T d1mc3a_         172 TGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLG  217 (291)
T ss_dssp             EEEEECCTHHHHHHHSCCCCSSSSCCHHHHHHHHHHTTCEEEEECC
T ss_pred             EEEEEeChHHHHHHhcCCCCCCCceeehHHHHHHHHcCCceEEEec
Confidence            5568999999998854333322 2245566666666554 444444

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=84.13  E-value=7.7  Score=30.02  Aligned_cols=109  Identities=12%  Similarity=0.136  Sum_probs=64.9

Q ss_pred             HHHHHHHHHhhccCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceeccchhHHHHHHHHHHHHHHhc
Q psy3650         273 LGTAYMHGLKYATGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGWDFKRKLVSRGANYLTQLLL  351 (435)
Q Consensus       273 ~~~a~n~g~~~a~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (435)
                      ...+...|++..+.++|++.|+|.- ++++.+.+++..+.+  .+.++......+......    .           ..-
T Consensus        74 r~~Sv~~gl~~~~~~~VlIhd~~rP~i~~~~i~~li~~~~~--~~~~i~~~~~~dti~~~~----~-----------~~~  136 (205)
T d1w55a1          74 RAESLKKALELIDSEFVMVSDVARVLVSKNLFDRLIENLDK--ADCITPALKVADTTLFDN----E-----------ALQ  136 (205)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEETTCTTCCHHHHHHHHTTGGG--CSEEEEEECCCSCEEETT----E-----------EEC
T ss_pred             hhhhhhhhhhhhhhcceeeeccCcccCcHHHHHHHHhhhhc--cccccccccccccccccc----c-----------ccc
Confidence            4567788999999999999999985 889999999988765  344444332222211000    0           000


Q ss_pred             CCCccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeee
Q psy3650         352 RPGVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPI  404 (435)
Q Consensus       352 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~  404 (435)
                      ...+...+.. =+|+++.+++..  .....++.|..+.   ...|.++..++-
T Consensus       137 R~~l~~~qTP-Q~f~~~~l~~a~--~~~~~~tDd~~~~---~~~g~~v~~i~g  183 (205)
T d1w55a1         137 REKIKLIQTP-QISKTKLLKKAL--DQNLEFTDDSTAI---AAMGGKIWFVEG  183 (205)
T ss_dssp             GGGCCEECSC-EEEEHHHHHHHT--SSCCCCSSHHHHH---HTTTCCEEEEEC
T ss_pred             chheeeeecc-hhhhhHHHHHHH--HcCCCCCcHHHHH---HHcCCCEEEEec
Confidence            1111111111 158888888873  3334455555443   467888877763

>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: 1,3-Glucuronyltransferase I (glcAT-I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.78  E-value=0.35  Score=39.23  Aligned_cols=71  Identities=10%  Similarity=0.007  Sum_probs=45.1

Q ss_pred             CCeEEEEEeCCC--CcChHHHHHHHHHHhCCceEEEccC--CCCC------------CHHHHHHHHHhhcc---------
Q psy3650           6 YPYEIIVIDDGS--PDGTLDAAKQLQSIYGSEKIVLKPR--KKKL------------GLGTAYMHGLKYAT---------   60 (435)
Q Consensus         6 ~~~EiivvDd~S--~d~t~~i~~~~~~~~~~~~i~~~~~--~~n~------------g~~~a~n~gl~~a~---------   60 (435)
                      .++-+|||+|+.  ++.+.+++++.     .+...++..  +...            -....+|.|+++.+         
T Consensus        30 p~l~WIVVEDa~~~t~~v~~lL~~s-----gl~y~HL~~~tp~~~~~~~~~~~~~~prgv~qRn~aL~~ir~~~~~~~~~  104 (261)
T d3cu0a1          30 PRLHWLLVEDAEGPTPLVSGLLAAS-----GLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGE  104 (261)
T ss_dssp             SSEEEEEEESSSSCCHHHHHHHHHH-----CSEEEEEECCCC-----------CCCCCSHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHc-----CCceEEeecCCchhhcccccCcccccccCHHHHHHHHHHHHHcccccccc
Confidence            358899998765  33455555553     233333321  1111            11257999999886         


Q ss_pred             --------CCEEEEEcCCCCCCCCcHHHH
Q psy3650          61 --------GNFIIIMDADLSHHPKFIPEM   81 (435)
Q Consensus        61 --------gd~i~~lD~D~~~~~~~l~~~   81 (435)
                              ..+|.|.|+|..++...+++|
T Consensus       105 ~~~~~~~~~GVVyFADDdNtYsl~LF~em  133 (261)
T d3cu0a1         105 KDPPPPGTQGVVYFADDDNTYSRELFEEM  133 (261)
T ss_dssp             CSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             cccccCCCceEEEEecCCCcccHHHHHHH
Confidence                    268999999999998877775

>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KdsB [TaxId: 562]

Probab=83.18  E-value=8.9  Score=30.28  Aligned_cols=142  Identities=13%  Similarity=0.003  Sum_probs=70.6

Q ss_pred             eEEEecCCCCCCHHHHHHHHHhhc--cCCEEEEEeCCCC-CCCccHHHHHHHHhcCCCceEEeeeEECCCceecc-----
Q psy3650         261 KIVLKPRKKKLGLGTAYMHGLKYA--TGNFIIIMDADLS-HHPKFIPEMIKLQQQENLDVVTGTRYVGTGGVYGW-----  332 (435)
Q Consensus       261 ~i~~~~~~~n~g~~~a~n~g~~~a--~~d~v~~~d~D~~-~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----  332 (435)
                      .+.........|............  ..+.++.+.+|.. .++..+..++..+.....+.+..............     
T Consensus        63 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~pl~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk  142 (246)
T d1vh1a_          63 EVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVK  142 (246)
T ss_dssp             EEEECC-----CHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHSSSSEEEEEEECCCHHHHTCTTSCE
T ss_pred             cceeecccccccchHHHHHHHhhcccccceeeeeccccccchhhHHHHHhhhhcccccccccccccccchhcccCCCcce
Confidence            555544333334433333333222  3578999999986 78889999999887777776665432221110000     


Q ss_pred             ----------chhHHH-HHHHHHHHHHHhcCCCccccccceeeecHHHHHHhhhcccCc-ccchhhHHHHHHHHCCCcEE
Q psy3650         333 ----------DFKRKL-VSRGANYLTQLLLRPGVSDLTGSFRLYKKQVLENLVSSCVSK-GYVFQMEMVIRARQYNYTIG  400 (435)
Q Consensus       333 ----------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~D~el~lr~~~~G~~i~  400 (435)
                                .+-+.. .....................+|..+|+++.+.+......+. .-.|+.|. +|+...|+++.
T Consensus       143 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giy~~~~~~l~~~~~~~~s~~E~~e~le~-lR~i~~g~~i~  221 (246)
T d1vh1a_         143 VVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQ-LRVLWYGEKIH  221 (246)
T ss_dssp             EEECTTSBEEEEESSCSSCCHHHHSSCCCCCCSCCEEEEEEEEEEHHHHHHHHHSCCCHHHHHHTCTT-HHHHHTTCCEE
T ss_pred             eeecccCcccccccccchhhhhhhhhhhhccchhhheecceeeechhhhhhhccCCCChHHHHHhHHH-HHHHHCCCceE
Confidence                      000000 000000000001111222345678899999998885432211 11245554 58889999986


Q ss_pred             Eee
Q psy3650         401 EVP  403 (435)
Q Consensus       401 ~~p  403 (435)
                      .+.
T Consensus       222 ~~~  224 (246)
T d1vh1a_         222 VAV  224 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=81.01  E-value=5.1  Score=33.09  Aligned_cols=190  Identities=14%  Similarity=0.072  Sum_probs=94.4

Q ss_pred             EeccCCCCChHHHHHHHHHHhhcCCCCeEEEEEeCCCCcchHHHHHHHHHHhC---------CceEEEecCCC------C
Q psy3650         206 LPTYNEKENLPIIVYLITKYMDEGNYPYEIIVIDDGSPDGTLDAAKQLQSIYG---------SEKIVLKPRKK------K  270 (435)
Q Consensus       206 ip~~n~~~~l~~~l~~l~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---------~~~i~~~~~~~------n  270 (435)
                      +|+-+....+..+++.+.+.     .--+|+|+-+-..+...   +.+...++         .....+.....      .
T Consensus        37 lpv~g~~plI~~~l~~l~~~-----gi~~I~Iv~~~~~~~i~---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  108 (307)
T d1yp2a2          37 VPLGANYRLIDIPVSNCLNS-----NISKIYVLTQFNSASLN---RHLSRAYASNMGGYKNEGFVEVLAAQQSPENPDWF  108 (307)
T ss_dssp             CEETTTEETTHHHHHHHHHT-----TCCEEEEEESCCCHHHH---HHHHHHCC--------CCEEEEEESCSSTTSCCCC
T ss_pred             EEECCCCCHHHHHHHHHHHc-----CCCEEEEEeccccccch---hhhhcccccccccccccccceeeceeeeccccccc
Confidence            34444456788888877542     13478777655443333   33332221         11222222111      2


Q ss_pred             CCHHHHHHHHHhhcc---CCEEEEEeCCCCCCCccHHHHHHHHhcCCCceEEeeeEEC-------------CCceeccch
Q psy3650         271 LGLGTAYMHGLKYAT---GNFIIIMDADLSHHPKFIPEMIKLQQQENLDVVTGTRYVG-------------TGGVYGWDF  334 (435)
Q Consensus       271 ~g~~~a~n~g~~~a~---~d~v~~~d~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-------------~~~~~~~~~  334 (435)
                      .|.+.++..+.....   .+.++++++|..+..+ +..++...+..+.++........             +.+.. ..+
T Consensus       109 ~g~~~ai~~~~~~i~~~~~~~~iv~~~D~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gvv~~d~~~~v-~~~  186 (307)
T d1yp2a2         109 QGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMD-YEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI-IEF  186 (307)
T ss_dssp             CSHHHHHHHTHHHHTTSCCSEEEEECSCEECCCC-HHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTTSBE-EEE
T ss_pred             cchhHHHHHhHHhhhccccceEEEecCcceeccc-hhhhhhhhhhccccceEEEEecccccccccceEEECCCCcE-EEE
Confidence            477788877777653   3778999999988876 46666655544444433222111             11100 000


Q ss_pred             hHHHHHHHHHH--HHHHhcCC-------CccccccceeeecHHHHHHhhhcccCcccchhhHHHHHHHHCCCcEEEeeeE
Q psy3650         335 KRKLVSRGANY--LTQLLLRP-------GVSDLTGSFRLYKKQVLENLVSSCVSKGYVFQMEMVIRARQYNYTIGEVPIS  405 (435)
Q Consensus       335 ~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~D~el~lr~~~~G~~i~~~p~~  405 (435)
                      ..+-.......  ........       ......+|..+|++++++++..........+-.|+..++...|.++.-+|+.
T Consensus       187 ~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~~~~d~i~~li~~g~~v~~~~~~  266 (307)
T d1yp2a2         187 AEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYD  266 (307)
T ss_dssp             EESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHHHHHHTTCCEEEEECC
T ss_pred             EECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccchHHHHHHHHHHCCCcEEEEEeC
Confidence            00000000000  00000000       0112234567899999988743333222223456777889999998877763