Psyllid ID: psy3651

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MYSNSKDGNCVETRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccHHHHHHcccccEEEEcHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccEEEEEEEEccEEEEEEEEccccccccccccccccccEEEEEEEccccHHHHHcccccccHHHHHHHHHHHHcccccccccEEEEEcHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccEEEEEEEccEEEEEEEcccccccHHHHHHHHccccEEEEEEEHHHHHcEcccccccEHHHHHHHHHHHHHccHHHcccEEEEEEEcHHHHHHHHHHccHHHHHHccccccccccHHHHHHHHHHHHHHHccccccEEEEccEcccccHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mysnskdgncvetrACVFHVRLYFSVEcccerhsgnnsftsfpgMKVLIDARSKllhdnkfgipwqndmNAIHAEKIfqfdnntcidsrlFSTYVDELKSLWDDVAIRQAFErrseyqlgdsiqYFFDNWdrisrrvnsplfqdyipsnkDILHARKATKGITEFTIVISNipflfvdvggqrsqrrkwfqcFDSVTSILFLVSsseydqtlvedrrtnrlhesRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTsiaehfpefegdpqdMQAVQTFLLNYFKAvkrdekkplfhhfttavdteNIKIVFNAVKNTILHRNLRDLMLQ
Flexible Loop (DISEMBL)
mysnskdgncvetrACVFHVRLYFSVECCCERHsgnnsftsfpgMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFerrseyqlgdsIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEdrrtnrlhesrnifdtiinnviFRNVSFILFLNKTDLLAEKLRTSKTSIAehfpefegdpqDMQAVQTFLLNYFKAVKRDEKKPLFHHfttavdtenikIVFNAVKNtilhrnlrdlmlq
Low Complexity Region (SEG)
MYSNSKDGNCVETRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ
Disordered region (IsUnstruct)
********NCVETRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTS***IA**F*********MQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR*****
Disordered Region (DISOPRED)
*************RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML*
Disordered Region (DISEMBL)
********NCVETRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ
Disordered Region (DISPRO)
******DGNCVETRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYSNSKDGNCVETRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
P27600	379	Guanine nucleotide-bindin	yes	N/A	0.826	0.728	0.576	2e-91
Q03113	381	Guanine nucleotide-bindin	yes	N/A	0.826	0.724	0.576	2e-91
Q63210	379	Guanine nucleotide-bindin	yes	N/A	0.826	0.728	0.576	2e-91
P27601	377	Guanine nucleotide-bindin	no	N/A	0.826	0.732	0.536	4e-88
Q14344	377	Guanine nucleotide-bindin	no	N/A	0.826	0.732	0.540	9e-87
Q19572	355	Guanine nucleotide-bindin	yes	N/A	0.835	0.785	0.481	7e-76
Q613V4	355	Guanine nucleotide-bindin	N/A	N/A	0.835	0.785	0.481	1e-75
P25157	457	Guanine nucleotide-bindin	yes	N/A	0.829	0.606	0.518	5e-72
P21279	359	Guanine nucleotide-bindin	no	N/A	0.823	0.766	0.434	2e-61
Q2PKF4	359	Guanine nucleotide-bindin	no	N/A	0.823	0.766	0.434	2e-61

>sp|P27600|GNA12_MOUSE Guanine nucleotide-binding protein subunit alpha-12 OS=Mus musculus GN=Gna12 PE=1 SV=3

 Score =  335 bits (860), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 210/293 (71%), Gaps = 17/293 (5%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
           G +VL+DAR KL      GIPWQ+  N  H   +  F+N     ++   F  YV  L +L
Sbjct: 102 GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 155

Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W D  IR+AF RRSE+QLG+S++YF DN DRI +        +Y PS +DIL ARKATKG
Sbjct: 156 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-------LNYFPSKQDILLARKATKG 208

Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct: 209 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 268

Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES NIF+TI+NN +F NVS ILFLNK DLL EK+++   SI +HFP+F+GDP  ++ VQ
Sbjct: 269 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFKGDPHRLEDVQ 326

Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
            +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct: 327 RYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 379

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.
Mus musculus (taxid: 10090)

>sp|Q03113|GNA12_HUMAN Guanine nucleotide-binding protein subunit alpha-12 OS=Homo sapiens GN=GNA12 PE=1 SV=4

 Score =  335 bits (860), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 208/293 (70%), Gaps = 17/293 (5%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
           G +VL+DAR KL      GIPWQ   N  H   +  F+N     ++   F  YV  L +L
Sbjct: 104 GSRVLVDARDKL------GIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 157

Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W D  IR+AF RRSE+QLG+S++YF DN DRI +        +Y PS +DIL ARKATKG
Sbjct: 158 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-------LNYFPSKQDILLARKATKG 210

Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct: 211 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 270

Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES NIF+TI+NN +F NVS ILFLNK DLL EK++T   SI +HFP+F GDP  ++ VQ
Sbjct: 271 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKT--VSIKKHFPDFRGDPHRLEDVQ 328

Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
            +L+  F   +R+  KPLFHHFTTA+DTEN++ VF+AVK+TIL  NL+D+MLQ
Sbjct: 329 RYLVQCFDRKRRNRSKPLFHHFTTAIDTENVRFVFHAVKDTILQENLKDIMLQ 381

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Homo sapiens (taxid: 9606)

>sp|Q63210|GNA12_RAT Guanine nucleotide-binding protein subunit alpha-12 OS=Rattus norvegicus GN=Gna12 PE=2 SV=3

 Score =  335 bits (860), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 210/293 (71%), Gaps = 17/293 (5%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
           G +VL+DAR KL      GIPWQ+  N  H   +  F+N     ++   F  YV  L +L
Sbjct: 102 GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 155

Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W D  IR+AF RRSE+QLG+S++YF DN DRI +        +Y PS +DIL ARKATKG
Sbjct: 156 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-------LNYFPSKQDILLARKATKG 208

Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct: 209 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 268

Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES NIF+TI+NN +F NVS ILFLNK DLL EK+++   SI +HFP+F+GDP  ++ VQ
Sbjct: 269 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFKGDPHRLEDVQ 326

Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
            +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct: 327 RYLVQCFDRKRRNRGKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 379

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Rattus norvegicus (taxid: 10116)

>sp|P27601|GNA13_MOUSE Guanine nucleotide-binding protein subunit alpha-13 OS=Mus musculus GN=Gna13 PE=1 SV=1

 Score =  325 bits (832), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 160/298 (53%), Positives = 218/298 (73%), Gaps = 22/298 (7%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
           GM+VL+DAR KL       IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct: 95  GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 148

Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +++LW+D  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct: 149 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 201

Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            TKGI E+   I N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+
Sbjct: 202 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 261

Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++    SI ++F EFEGDP  +
Sbjct: 262 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 319

Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           + VQ FL+  F+  +RD +++PL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct: 320 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 377

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Mus musculus (taxid: 10090)

>sp|Q14344|GNA13_HUMAN Guanine nucleotide-binding protein subunit alpha-13 OS=Homo sapiens GN=GNA13 PE=1 SV=2

 Score =  320 bits (820), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 161/298 (54%), Positives = 215/298 (72%), Gaps = 22/298 (7%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
           GM+VL+DAR KL       IPW ++ N  H +K+  FD          +++R+F  Y+  
Sbjct: 95  GMRVLVDAREKL------HIPWGDNSNQQHGDKMMSFDTRAPMAAQGMVETRVFLQYLPA 148

Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +++LW D  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct: 149 IRALWADSGIQNAYDRRREFQLGESVKYFLDNLDKLGE-------PDYIPSQQDILLARR 201

Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            TKGI E+   I N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR 
Sbjct: 202 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRL 261

Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++    SI ++F EFEGDP  +
Sbjct: 262 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQI--VSIKDYFLEFEGDPHCL 319

Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           + VQ FL+  F+  +RD ++KPL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct: 320 RDVQKFLVECFRNKRRDQQQKPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 377

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Homo sapiens (taxid: 9606)

>sp|Q19572|GPA12_CAEEL Guanine nucleotide-binding protein alpha-12 subunit OS=Caenorhabditis elegans GN=gpa-12 PE=2 SV=2

 Score =  284 bits (726), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 143/297 (48%), Positives = 205/297 (69%), Gaps = 18/297 (6%)

Query: 41  SFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDE--- 97
           +   M+VL+DAR      NK GI W++    +  EK+ +F     +    F+T+V+    
Sbjct: 74  AISAMRVLLDAR------NKLGIAWEDPKRQVEVEKVMRFSVGDLLKGIDFTTFVEVAPI 127

Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +   W+D AIR+ +E+R+ +Q+ DS QYFF++  RI+         D+ P+N+DIL  RK
Sbjct: 128 ISDFWNDAAIRKTYEQRNLFQISDSCQYFFEHIPRIA-------MPDFYPTNRDILFCRK 180

Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
           AT+GI+E    I+ IPF F+DVGGQRSQR+KWFQCF  +TSILF+V+S+EYDQ ++EDRR
Sbjct: 181 ATRGISEHIFEINKIPFRFIDVGGQRSQRQKWFQCFTDITSILFMVASNEYDQVILEDRR 240

Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNR+ ESR++F+TI+NN  F NVS ILF+NK DLL EK+   K+ I ++F +F GD   +
Sbjct: 241 TNRVVESRSVFETIVNNRAFSNVSIILFMNKNDLLQEKV--PKSDIRQYFTDFTGDHTLV 298

Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           + VQ FL++ F+A +RD  +P F+HFTTAVDTENI+ VF  V+ +IL +NL+ LM+Q
Sbjct: 299 RDVQFFLVDKFEASRRDRARPFFYHFTTAVDTENIRRVFRDVRESILEQNLKTLMMQ 355

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Caenorhabditis elegans (taxid: 6239)

>sp|Q613V4|GPA12_CAEBR Guanine nucleotide-binding protein alpha-12 subunit OS=Caenorhabditis briggsae GN=gpa-12 PE=3 SV=1

 Score =  283 bits (724), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/297 (48%), Positives = 205/297 (69%), Gaps = 18/297 (6%)

Query: 41  SFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDE--- 97
           +   M+VL+DAR      NK GI W++    +  EK+ +F     +    F+T+V+    
Sbjct: 74  AISAMRVLLDAR------NKLGIAWEDPKRQVEVEKVMRFTVGDLLKGIDFTTFVEVAPI 127

Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +   W+D AIR+ +E+R+ +Q+ DS QYFF++  RI+         D+ P+N+DIL  RK
Sbjct: 128 ISDFWNDAAIRKTYEQRNLFQISDSCQYFFEHIPRIA-------MPDFYPTNRDILFCRK 180

Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
           AT+GI+E    I+ IPF F+DVGGQRSQR+KWFQCF  +TSILF+V+S+EYDQ ++EDRR
Sbjct: 181 ATRGISEHIFEINKIPFRFIDVGGQRSQRQKWFQCFTDITSILFMVASNEYDQVILEDRR 240

Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNR+ ESR++F+TI+NN  F NVS ILF+NK DLL EK+   K+ I ++F +F GD   +
Sbjct: 241 TNRVVESRSVFETIVNNRSFSNVSIILFMNKNDLLQEKV--PKSDIRQYFTDFTGDHTLV 298

Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           + VQ FL++ F+A +RD  +P F+HFTTAVDTENI+ VF  V+ +IL +NL+ LM+Q
Sbjct: 299 RDVQFFLVDKFEASRRDRARPFFYHFTTAVDTENIRRVFRDVRESILEQNLKTLMMQ 355

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Caenorhabditis briggsae (taxid: 6238)

>sp|P25157|GNAL_DROME Guanine nucleotide-binding protein subunit alpha homolog OS=Drosophila melanogaster GN=cta PE=2 SV=1

 Score =  271 bits (693), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/293 (51%), Positives = 198/293 (67%), Gaps = 16/293 (5%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GM+VL+DAR KL       I W +D     A      + N+ +D   F  Y   +  LW 
Sbjct: 179 GMQVLLDAREKL------NIAWGSDGREQDAYDAKLMECNS-LDVPKFMEYAPPISRLWQ 231

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D  IR+AFERR E+Q+ DS+ YF D   R++    +P   DY+P++KDILH RKATKG+ 
Sbjct: 232 DRGIRRAFERRREFQISDSVSYFLDEIQRLA----TP---DYVPTHKDILHCRKATKGVY 284

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDS-VTSILFLVSSSEYDQTLVEDRRTNRLH 222
           EF + + NIPF+FVDVGGQR+QR+KW +CFDS VTSI+FLVSSSE+DQ L EDR+TNRL 
Sbjct: 285 EFCVKVQNIPFVFVDVGGQRTQRQKWTRCFDSSVTSIIFLVSSSEFDQVLAEDRKTNRLE 344

Query: 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQT 282
           ES+NIFDTI+NN  F+ +S ILFLNKTDLL +K+   +T I  ++P F G+P  +  VQ 
Sbjct: 345 ESKNIFDTIVNNATFKGISIILFLNKTDLLEQKVCNPETDIRWYYPHFNGNPHSVLDVQN 404

Query: 283 FLLNYF-KAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           F+L  F    +      ++HHFTTA+DT NI +VFN+VK+TIL RNL  LMLQ
Sbjct: 405 FILQMFMSVRRSSSISRIYHHFTTAIDTRNINVVFNSVKDTILQRNLNALMLQ 457

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Drosophila melanogaster (taxid: 7227)

>sp|P21279|GNAQ_MOUSE Guanine nucleotide-binding protein G(q) subunit alpha OS=Mus musculus GN=Gnaq PE=1 SV=4

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)

Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
           F  M+ +I A   L       IP++ + N  HA+ + + D      S   + YVD +KSL
Sbjct: 84  FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 135

Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W+D  I++ ++RR EYQL DS +Y+ ++ DR++     P    Y+P+ +D+L  R  T G
Sbjct: 136 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 188

Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    NR+
Sbjct: 189 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 248

Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA +
Sbjct: 249 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAR 306

Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 307 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 358

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. Regulates B-cell selection and survival and is required to prevent B-cell-dependent autoimmunity. Regulates chemotaxis of BM-derived neutrophils and dendritic cells (in vitro).

Mus musculus (taxid: 10090)

>sp|Q2PKF4|GNAQ_PIG Guanine nucleotide-binding protein G(q) subunit alpha OS=Sus scrofa GN=GNAQ PE=2 SV=3

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)

Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
           F  M+ +I A   L       IP++ + N  HA+ + + D      S   + YVD +KSL
Sbjct: 84  FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 135

Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W+D  I++ ++RR EYQL DS +Y+ ++ DR++     P    Y+P+ +D+L  R  T G
Sbjct: 136 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DPA---YLPTQQDVLRVRVPTTG 188

Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    NR+
Sbjct: 189 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 248

Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA +
Sbjct: 249 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAR 306

Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 307 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 358

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
193678943	368	PREDICTED: guanine nucleotide-binding pr	0.832	0.755	0.659	1e-105
156541322	369	PREDICTED: guanine nucleotide-binding pr	0.832	0.753	0.652	1e-104
332023966	367	Guanine nucleotide-binding protein subun	0.832	0.757	0.646	1e-103
340729140	369	PREDICTED: guanine nucleotide-binding pr	0.832	0.753	0.642	1e-103
307187703	367	Guanine nucleotide-binding protein subun	0.832	0.757	0.646	1e-103
66513952	369	PREDICTED: guanine nucleotide-binding pr	0.832	0.753	0.642	1e-103
307209922	369	Guanine nucleotide-binding protein subun	0.832	0.753	0.639	1e-102
383858828	369	PREDICTED: guanine nucleotide-binding pr	0.832	0.753	0.635	1e-101
242010183	368	GTP-binding protein alpha subunit, gna,	0.832	0.755	0.635	2e-99
189241234	659	PREDICTED: similar to GTP-binding protei	0.811	0.411	0.614	4e-93

>gi|193678943|ref|XP_001951739.1| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog isoform 1 [Acyrthosiphon pisum] gi|328718923|ref|XP_003246620.1| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog isoform 2 [Acyrthosiphon pisum]

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/291 (65%), Positives = 227/291 (78%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL DAR KL      GIPW+N  N  + E I  FDN T +D+RLF +Y   +  LW 
Sbjct: 91  GMKVLADARQKL------GIPWENPDNNKNGEFILSFDNRTTLDTRLFQSYAPSMYCLWK 144

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D AI++AFERR E+QL DS+QYF DN + I+R        DY+P+NKDILHAR+ATKGI 
Sbjct: 145 DAAIKRAFERRREFQLSDSVQYFLDNIENIAR-------SDYLPTNKDILHARRATKGIY 197

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EFTI I+NIPF FVDVGGQRSQR+KWFQCFDSVTSILFLVSSSE+DQ LVEDR+TNRL E
Sbjct: 198 EFTIPINNIPFRFVDVGGQRSQRQKWFQCFDSVTSILFLVSSSEFDQVLVEDRKTNRLEE 257

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           S++IFD+I+NNVIFR VS ILF+NKTDLLA+KL   +T+I  +FP F GDP  +  VQ F
Sbjct: 258 SKDIFDSIVNNVIFRRVSIILFMNKTDLLADKLERRETNIKHYFPNFAGDPHSLPDVQIF 317

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           LL++F+  KRD +K LFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 318 LLDFFRQAKRDPRKSLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 368

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541322|ref|XP_001600076.1| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog [Nasonia vitripennis]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/291 (65%), Positives = 230/291 (79%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       IPW+   N     ++ +F+N   +D+RLF  YV  L+SLW 
Sbjct: 92  GMKVLVDARDKL------NIPWEQPKNYDIGYQLLKFENTMILDARLFLHYVPALQSLWK 145

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D +I++AF+RR E+QL DS+QYF DN DRI+R        DY+P+++DILH RKATKGI+
Sbjct: 146 DASIKKAFDRRREFQLSDSVQYFLDNLDRIAR-------VDYVPTHQDILHCRKATKGIS 198

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPFLFVDVGGQRSQR+KW+QCFD VTSILFLVSSSE+DQ L+EDRRTNRL E
Sbjct: 199 EFVIQINNIPFLFVDVGGQRSQRQKWYQCFDCVTSILFLVSSSEFDQVLLEDRRTNRLEE 258

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           SRNIFDTIINN+IF  VS ILFLNKTDLL +K+R+S T++  +FP+F GDP  M+ VQ F
Sbjct: 259 SRNIFDTIINNMIFYGVSVILFLNKTDLLDKKVRSSDTNVRWYFPQFTGDPHSMKDVQNF 318

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L+ F +VKRD KKPLFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 319 ILDLFVSVKRDPKKPLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 369

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023966|gb|EGI64184.1| Guanine nucleotide-binding protein subunit alpha-like protein [Acromyrmex echinatior]

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/291 (64%), Positives = 229/291 (78%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       IPW+N  N     ++ +F+N   +D+RLF  YV  L+SLW 
Sbjct: 90  GMKVLVDARDKL------NIPWENSKNYDIGFQLLKFENTMVLDTRLFLHYVPALQSLWT 143

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D +I++AF+RR E+QL DS+QYF DN DRI+R        DY P+++DILH RKATKGI+
Sbjct: 144 DASIKRAFDRRREFQLSDSVQYFLDNLDRIAR-------VDYTPTHQDILHCRKATKGIS 196

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPFLFVDVGGQRSQR+KW+QCFD VTSILFLVSSSE+DQ L+EDRRTNRL E
Sbjct: 197 EFVIPINNIPFLFVDVGGQRSQRQKWYQCFDCVTSILFLVSSSEFDQVLLEDRRTNRLEE 256

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           S+NIFDTI+NN+IF  VS ILFLNKTDLL +K+R+  T+I  +FP+F GDP  M+ VQ F
Sbjct: 257 SKNIFDTIVNNMIFCGVSIILFLNKTDLLDKKVRSQDTNIRYYFPQFAGDPHSMKDVQNF 316

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L+ F +VKRD +KPLFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 317 ILDMFVSVKRDPRKPLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 367

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729140|ref|XP_003402866.1| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog [Bombus terrestris] gi|350401571|ref|XP_003486194.1| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog [Bombus impatiens]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/291 (64%), Positives = 228/291 (78%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       IPW+N  N     ++ +F+N   +D+RLF  YV  L+SLW 
Sbjct: 92  GMKVLVDARDKL------NIPWENSKNYDIGYQLLKFENTMVLDARLFLHYVPALQSLWK 145

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D +IR+AF+RR E+QL DS+QYF DN DRI+R        DY+P+++DILH RKATKGI+
Sbjct: 146 DASIRKAFDRRREFQLSDSVQYFLDNLDRIAR-------VDYVPTHQDILHCRKATKGIS 198

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPFLFVDVGGQRSQR+KW+QCFD VTSILFLVSSSE+DQ L+EDRRTNRL E
Sbjct: 199 EFVIQINNIPFLFVDVGGQRSQRQKWYQCFDCVTSILFLVSSSEFDQVLLEDRRTNRLEE 258

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           S+NIFDTI+NN+IF  VS ILFLNKTDLL +K+R+  T++  +FP+F GD   M+ VQ F
Sbjct: 259 SKNIFDTIVNNMIFGGVSIILFLNKTDLLDKKVRSPDTNVRWYFPQFTGDSHSMKDVQNF 318

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L  F +VKRD +KPLFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 319 ILEMFISVKRDPRKPLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 369

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187703|gb|EFN72675.1| Guanine nucleotide-binding protein subunit alpha-like protein [Camponotus floridanus]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/291 (64%), Positives = 227/291 (78%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       IPW+N  N     ++ +F+N   +D+RLF  YV  L+SLW 
Sbjct: 90  GMKVLVDARDKL------NIPWENPKNYDIGFQLLKFENTMVLDTRLFLHYVPALQSLWK 143

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D +IR+AF+RR E+QL DS+QYF DN DRI+R        DY P+++DILH RKATKGI+
Sbjct: 144 DASIRRAFDRRREFQLSDSVQYFLDNLDRIAR-------VDYTPTHQDILHCRKATKGIS 196

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           E  I I+NIPFLFVDVGGQRSQR+KW+QCFD VTSILFLVSSSE+DQ L+EDRRTNRL E
Sbjct: 197 ECVIPINNIPFLFVDVGGQRSQRQKWYQCFDCVTSILFLVSSSEFDQVLLEDRRTNRLEE 256

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           SRNIFDTI+NN+IF  VS ILFLNKTDLL +K+R+  T++  +FP+F GDP  M  VQ F
Sbjct: 257 SRNIFDTIVNNMIFCGVSIILFLNKTDLLDKKVRSQDTNVRLYFPQFAGDPHSMNDVQNF 316

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L+ F +VKRD +KPLFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 317 ILDMFVSVKRDPRKPLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 367

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66513952|ref|XP_394382.2| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog [Apis mellifera] gi|380013849|ref|XP_003690958.1| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog [Apis florea]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/291 (64%), Positives = 228/291 (78%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       IPW+N  N     ++ +F+N   +D+RLF  YV  L+SLW 
Sbjct: 92  GMKVLVDARDKL------NIPWENAKNYDIGYQLLKFENTMVLDARLFLHYVPALQSLWK 145

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D +I++AF+RR E+QL DS+QYF DN DRI+R        DY+P+++DILH RKATKGI+
Sbjct: 146 DASIKKAFDRRREFQLSDSVQYFLDNLDRIAR-------VDYVPTHQDILHCRKATKGIS 198

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPFLFVDVGGQRSQR+KW+QCFD VTSILFLVSSSE+DQ L+EDRRTNRL E
Sbjct: 199 EFVIQINNIPFLFVDVGGQRSQRQKWYQCFDCVTSILFLVSSSEFDQVLLEDRRTNRLEE 258

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           SRNIFDTI+NN+IF  VS ILFLNKTDLL +K+R+  T++  +FP+F GD   M+ VQ F
Sbjct: 259 SRNIFDTIVNNMIFCGVSIILFLNKTDLLDKKVRSPDTNVRWYFPQFTGDSHSMKDVQNF 318

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L  F +VKRD +KPLFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 319 ILEMFISVKRDPRKPLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 369

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209922|gb|EFN86700.1| Guanine nucleotide-binding protein subunit alpha-like protein [Harpegnathos saltator]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/291 (63%), Positives = 228/291 (78%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       IPW+N  N     ++ +F+N   +D+RLF  YV  L+SLW 
Sbjct: 92  GMKVLVDARDKL------NIPWENPKNYDIGFQLLKFENTMVLDARLFLHYVPALQSLWK 145

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D +IR+AF+RR E+QL DS+QYF DN DRI+R        +Y P+++DILH RKATKGI+
Sbjct: 146 DASIRRAFDRRREFQLSDSVQYFLDNLDRIAR-------VEYTPTHQDILHCRKATKGIS 198

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPFLFVDVGGQRSQR+KW+QCFD VTSILFLVSSSE+DQ L+EDRRTNRL E
Sbjct: 199 EFVIPINNIPFLFVDVGGQRSQRQKWYQCFDCVTSILFLVSSSEFDQVLLEDRRTNRLEE 258

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           SRNIFDTI+NN+IF  VS ILFLNKTDLL +K+++  T++  +FP+F GD   M+ VQ F
Sbjct: 259 SRNIFDTIVNNMIFCGVSIILFLNKTDLLDKKVKSQDTNVRWYFPQFTGDSHSMKDVQNF 318

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L+ F +VKRD +KPLFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 319 ILDMFISVKRDPRKPLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 369

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858828|ref|XP_003704901.1| PREDICTED: guanine nucleotide-binding protein subunit alpha homolog [Megachile rotundata]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/291 (63%), Positives = 227/291 (78%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       I W+N  N     ++ +F+N   +D+RLF  YV  L+SLW 
Sbjct: 92  GMKVLVDARDKL------NIQWENPKNYDIGYQLLKFENTMVLDARLFLHYVPALQSLWK 145

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D +I++AF+RR E+QL DS+QYF D+ DRI+R        DY+P+++DILH RKATKGI+
Sbjct: 146 DASIKRAFDRRREFQLSDSVQYFLDSLDRIAR-------MDYVPTHQDILHCRKATKGIS 198

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPFLFVDVGGQRSQR+KW+QCFD VTSILFLVSSSE+DQ L+EDRRTNRL E
Sbjct: 199 EFVIQINNIPFLFVDVGGQRSQRQKWYQCFDCVTSILFLVSSSEFDQVLLEDRRTNRLEE 258

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           SRNIFDTI+NN IF  VS ILFLNKTDLL +K+R+  T++  +FP+F GD   M+ VQ F
Sbjct: 259 SRNIFDTIVNNTIFGGVSIILFLNKTDLLDKKVRSPDTNVRWYFPQFTGDSHSMKDVQEF 318

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L+ F +VKRD +KPLFHHFTTAVDTENIK+VFNAVK+TILHRNL  LMLQ
Sbjct: 319 ILDMFISVKRDTRKPLFHHFTTAVDTENIKVVFNAVKDTILHRNLESLMLQ 369

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010183|ref|XP_002425854.1| GTP-binding protein alpha subunit, gna, putative [Pediculus humanus corporis] gi|212509792|gb|EEB13116.1| GTP-binding protein alpha subunit, gna, putative [Pediculus humanus corporis]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/291 (63%), Positives = 220/291 (75%), Gaps = 13/291 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GMKVL+DAR KL       I W +  N  +A  + + DNN  +D++ F+     +  LW 
Sbjct: 91  GMKVLVDARDKL------NIKWNDQNNFDYAYHLMKIDNNVFLDNKTFAQLASTISCLWK 144

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D AI+ AFERRSE+QL DS+QYF DN +RI+R        DY+P+N+DILHARKATKGI 
Sbjct: 145 DQAIKIAFERRSEFQLSDSVQYFLDNLERIARL-------DYVPTNQDILHARKATKGIY 197

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPF FVDVGGQRSQR+KWFQCFDSVTSILFLVSSSE+DQ LVEDRRTNRL E
Sbjct: 198 EFVIPINNIPFRFVDVGGQRSQRQKWFQCFDSVTSILFLVSSSEFDQVLVEDRRTNRLQE 257

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           S+NIFDTI+NN +F +VS ILFLNKTDLL  KL   +T   ++FPE++GD  D+  VQ F
Sbjct: 258 SQNIFDTIVNNQVFSSVSIILFLNKTDLLQRKLSIKETDFKKYFPEYKGDNHDLVQVQDF 317

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           +L  F ++KRD KKPLFHHFTTAVDTENIK VFNAVK+TILHRNL  LMLQ
Sbjct: 318 ILKQFVSIKRDPKKPLFHHFTTAVDTENIKYVFNAVKDTILHRNLESLMLQ 368

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241234|ref|XP_001812802.1| PREDICTED: similar to GTP-binding protein alpha subunit, gna [Tribolium castaneum]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 175/285 (61%), Positives = 213/285 (74%), Gaps = 14/285 (4%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
           GM+VL+DAR KL      GIPW +  NA   +++ QF N + +DSR F  Y   L  LW 
Sbjct: 91  GMRVLVDARDKL------GIPWGDTSNAALGKELLQF-NASVLDSRTFIQYCPLLVKLWR 143

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D  I +AF+RR E+QL DS++YF +N DR+SR        DYIP++KDILH RKATKGIT
Sbjct: 144 DSGILRAFDRRREFQLSDSVEYFLNNLDRVSR-------HDYIPNHKDILHCRKATKGIT 196

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           EF I I+NIPFLFVDVGGQRSQR+KWFQCFDSVTSILFLVSSSE+DQ L+EDR+TNRL E
Sbjct: 197 EFAIPINNIPFLFVDVGGQRSQRQKWFQCFDSVTSILFLVSSSEFDQVLLEDRKTNRLEE 256

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           SR+IFDTI+NN IF NVS ILFLNK DLL +K+   +T+I  +FP+F G+P  +  V+ F
Sbjct: 257 SRDIFDTIVNNRIFVNVSVILFLNKYDLLLKKVANPETNIHWYFPQFAGNPHSINDVKEF 316

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328
           +L  F  VKR+ +K L+HHFTTAVDTENIK+VF  VK  ILHRNL
Sbjct: 317 ILAMFTGVKRESRKVLYHHFTTAVDTENIKVVFEYVKEIILHRNL 361

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
UNIPROTKB|J9NX40	283	GNA12 "Uncharacterized protein	0.832	0.982	0.583	1e-84
UNIPROTKB|E1BIL1	305	GNA12 "Uncharacterized protein	0.826	0.904	0.587	1.7e-84
MGI|MGI:95767	379	Gna12 "guanine nucleotide bind	0.826	0.728	0.580	4.4e-84
UNIPROTKB|B3KXS2	322	GNA12 "cDNA FLJ45945 fis, clon	0.826	0.857	0.580	5.6e-84
UNIPROTKB|Q03113	381	GNA12 "Guanine nucleotide-bind	0.826	0.724	0.580	5.6e-84
RGD|71018	379	Gna12 "guanine nucleotide bind	0.826	0.728	0.580	7.2e-84
ZFIN|ZDB-GENE-050221-1	385	gna12a "guanine nucleotide bin	0.826	0.716	0.573	3.1e-83
UNIPROTKB|F1NVF4	371	GNA12 "Uncharacterized protein	0.826	0.743	0.576	4.5e-82
RGD|1310221	377	Gna13 "guanine nucleotide bind	0.826	0.732	0.543	1.2e-81
UNIPROTKB|F1LNG7	297	Gna13 "Protein Gna13" [Rattus	0.826	0.929	0.543	1.2e-81

UNIPROTKB|J9NX40 GNA12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 172/295 (58%), Positives = 211/295 (71%)

Query:    42 FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELK 99
             F G +VL+DAR KL      GIPWQ   N  H   +  F+N     ++   F  YV  L 
Sbjct:     4 FEGSRVLVDARDKL------GIPWQYSENEKHGMFLLAFENKAGLPVEPATFQLYVPALS 57

Query:   100 SLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT 159
             +LW D  IR+AF RRSE+QLG+S++YF DN DRI + +N      Y PS +DIL ARKAT
Sbjct:    58 ALWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-LN------YFPSKQDILLARKAT 110

Query:   160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTN 219
             KGI E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTN
Sbjct:   111 KGIVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTN 170

Query:   220 RLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQA 279
             RL ES NIF+TI+NN +F NVS ILFLNK DLL EK++T   SI +HFP+F+GDP  ++ 
Sbjct:   171 RLVESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKT--VSIKKHFPDFKGDPHRLED 228

Query:   280 VQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
             VQ +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct:   229 VQRYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 283

GO:0005525 "GTP binding" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

UNIPROTKB|E1BIL1 GNA12 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 172/293 (58%), Positives = 209/293 (71%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
             G +VL+DAR KL      GIPWQ   N  H   +  F+N     +D   F  YV  L +L
Sbjct:    28 GSRVLVDARDKL------GIPWQYSENEKHGMFLMAFENKAGLPVDPATFQLYVPALSAL 81

Query:   102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
             W D  IR+AF RRSE+QLG+S++YF DN DRI + +N      Y PS +DIL ARKATKG
Sbjct:    82 WGDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-LN------YFPSKQDILLARKATKG 134

Query:   162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
             I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDR TNRL
Sbjct:   135 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRHTNRL 194

Query:   222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
              ES NIF+TI+NN +F NVS ILFLNK DLL EK++T   SI +HFP+F+GDP  ++ VQ
Sbjct:   195 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKT--VSIKKHFPDFKGDPHRLEDVQ 252

Query:   282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
              FL+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct:   253 RFLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 305

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

MGI|MGI:95767 Gna12 "guanine nucleotide binding protein, alpha 12" [Mus musculus (taxid:10090)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 170/293 (58%), Positives = 211/293 (72%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
             G +VL+DAR KL      GIPWQ+  N  H   +  F+N     ++   F  YV  L +L
Sbjct:   102 GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 155

Query:   102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
             W D  IR+AF RRSE+QLG+S++YF DN DRI + +N      Y PS +DIL ARKATKG
Sbjct:   156 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-LN------YFPSKQDILLARKATKG 208

Query:   162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
             I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct:   209 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 268

Query:   222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
              ES NIF+TI+NN +F NVS ILFLNK DLL EK+++   SI +HFP+F+GDP  ++ VQ
Sbjct:   269 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFKGDPHRLEDVQ 326

Query:   282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
              +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct:   327 RYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 379

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IGI

GO:0003924 "GTPase activity" evidence=ISA;IBA;TAS

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA;TAS

GO:0006184 "GTP catabolic process" evidence=ISA;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISA;TAS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0007243 "intracellular protein kinase cascade" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007266 "Rho protein signal transduction" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IDA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031526 "brush border membrane" evidence=ISO;IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031752 "D5 dopamine receptor binding" evidence=ISO;IBA

GO:0042733 "embryonic digit morphogenesis" evidence=IGI

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B3KXS2 GNA12 "cDNA FLJ45945 fis, clone PLACE7006498, highly similar to Guanine nucleotide-binding protein alpha-12 subunit" [Homo sapiens (taxid:9606)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 170/293 (58%), Positives = 209/293 (71%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
             G +VL+DAR KL      GIPWQ   N  H   +  F+N     ++   F  YV  L +L
Sbjct:    45 GSRVLVDARDKL------GIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 98

Query:   102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
             W D  IR+AF RRSE+QLG+S++YF DN DRI + +N      Y PS +DIL ARKATKG
Sbjct:    99 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-LN------YFPSKQDILLARKATKG 151

Query:   162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
             I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct:   152 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 211

Query:   222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
              ES NIF+TI+NN +F NVS ILFLNK DLL EK++T   SI +HFP+F GDP  ++ VQ
Sbjct:   212 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKT--VSIKKHFPDFRGDPHRLEDVQ 269

Query:   282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
              +L+  F   +R+  KPLFHHFTTA+DTEN++ VF+AVK+TIL  NL+D+MLQ
Sbjct:   270 RYLVQCFDRKRRNRSKPLFHHFTTAIDTENVRFVFHAVKDTILQENLKDIMLQ 322

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q03113 GNA12 "Guanine nucleotide-binding protein subunit alpha-12" [Homo sapiens (taxid:9606)]

 Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
 Identities = 170/293 (58%), Positives = 209/293 (71%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
             G +VL+DAR KL      GIPWQ   N  H   +  F+N     ++   F  YV  L +L
Sbjct:   104 GSRVLVDARDKL------GIPWQYSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 157

Query:   102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
             W D  IR+AF RRSE+QLG+S++YF DN DRI + +N      Y PS +DIL ARKATKG
Sbjct:   158 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-LN------YFPSKQDILLARKATKG 210

Query:   162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
             I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct:   211 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 270

Query:   222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
              ES NIF+TI+NN +F NVS ILFLNK DLL EK++T   SI +HFP+F GDP  ++ VQ
Sbjct:   271 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKT--VSIKKHFPDFRGDPHRLEDVQ 328

Query:   282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
              +L+  F   +R+  KPLFHHFTTA+DTEN++ VF+AVK+TIL  NL+D+MLQ
Sbjct:   329 RYLVQCFDRKRRNRSKPLFHHFTTAIDTENVRFVFHAVKDTILQENLKDIMLQ 381

GO:0005525 "GTP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0007266 "Rho protein signal transduction" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031526 "brush border membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031752 "D5 dopamine receptor binding" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

RGD|71018 Gna12 "guanine nucleotide binding protein (G protein) alpha 12" [Rattus norvegicus (taxid:10116)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 170/293 (58%), Positives = 211/293 (72%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
             G +VL+DAR KL      GIPWQ+  N  H   +  F+N     ++   F  YV  L +L
Sbjct:   102 GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 155

Query:   102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
             W D  IR+AF RRSE+QLG+S++YF DN DRI + +N      Y PS +DIL ARKATKG
Sbjct:   156 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-LN------YFPSKQDILLARKATKG 208

Query:   162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
             I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct:   209 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 268

Query:   222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
              ES NIF+TI+NN +F NVS ILFLNK DLL EK+++   SI +HFP+F+GDP  ++ VQ
Sbjct:   269 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFKGDPHRLEDVQ 326

Query:   282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
              +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct:   327 RYLVQCFDRKRRNRGKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 379

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0003924 "GTPase activity" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005525 "GTP binding" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA;TAS

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0007212 "dopamine receptor signaling pathway" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=IEA;ISO

GO:0007266 "Rho protein signal transduction" evidence=ISO;IBA

GO:0008360 "regulation of cell shape" evidence=IEA;ISO

GO:0030154 "cell differentiation" evidence=IEA;ISO

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031526 "brush border membrane" evidence=IDA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031752 "D5 dopamine receptor binding" evidence=IPI

GO:0042493 "response to drug" evidence=IEP

GO:0042733 "embryonic digit morphogenesis" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-050221-1 gna12a "guanine nucleotide binding protein (G protein) alpha 12a" [Danio rerio (taxid:7955)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 168/293 (57%), Positives = 208/293 (70%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT--CIDSRLFSTYVDELKSL 101
             GM+VL+DAR KL      GI WQN  N  H   +  F+N     ++   F  YV  L++L
Sbjct:   108 GMRVLVDARDKL------GISWQNSENEKHGMFVMSFENKAGMAVEPCTFQLYVPALQAL 161

Query:   102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
             W+D  I++A+ RRSE+QL +S++YF DN DRI +         Y+PS +DIL ARKATKG
Sbjct:   162 WNDSGIQEAYGRRSEFQLSESVKYFLDNLDRIGQL-------SYVPSRQDILLARKATKG 214

Query:   162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
             I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct:   215 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 274

Query:   222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
              ES NIF+TI+NN +F NVS ILFLNK DLL EK+R  K SI +HF +F GDP  +  VQ
Sbjct:   275 VESMNIFETIVNNKLFSNVSIILFLNKMDLLVEKVR--KVSICKHFSDFRGDPHRLVDVQ 332

Query:   282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
              +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct:   333 AYLVQCFNRKRRNRIKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 385

GO:0019001 "guanyl nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IBA

GO:0004871 "signal transducer activity" evidence=IEA;IBA

GO:0006184 "GTP catabolic process" evidence=IEA;IBA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA;IBA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0031526 "brush border membrane" evidence=IBA

GO:0031752 "D5 dopamine receptor binding" evidence=IBA

GO:0007188 "adenylate cyclase-modulating G-protein coupled receptor signaling pathway" evidence=IBA

GO:0043149 "stress fiber assembly" evidence=IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IGI

GO:0001702 "gastrulation with mouth forming second" evidence=IGI;IMP

GO:0005622 "intracellular" evidence=IMP

GO:0007266 "Rho protein signal transduction" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IGI

GO:0055113 "epiboly involved in gastrulation with mouth forming second" evidence=IGI

GO:2000048 "negative regulation of cell-cell adhesion mediated by cadherin" evidence=IGI

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NVF4 GNA12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
 Identities = 169/293 (57%), Positives = 208/293 (70%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
             G +VL+DAR KL      GIPWQ   N  H   +  F+N     I+   F  YV  L +L
Sbjct:    94 GCRVLVDARDKL------GIPWQYTENEKHGMFLMAFENKAGMPIEPATFQLYVPALCAL 147

Query:   102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
             W D  I++AF RRSEYQLG+S++YF DN DRI + +N      Y PS +DIL ARKATKG
Sbjct:   148 WRDSGIKEAFSRRSEYQLGESVKYFLDNLDRIGQ-LN------YFPSKQDILLARKATKG 200

Query:   162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
             I E   +I  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct:   201 IVEHDFIIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 260

Query:   222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
              ES NIF+TI+NN +F NVS ILFLNK DLL EK++T   SI ++F +F+GDP  +  VQ
Sbjct:   261 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKT--VSIKKYFSDFKGDPHRLDDVQ 318

Query:   282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
              +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct:   319 HYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 371

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

RGD|1310221 Gna13 "guanine nucleotide binding protein (G protein), alpha 13" [Rattus norvegicus (taxid:10116)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 162/298 (54%), Positives = 218/298 (73%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
             GM+VL+DAR KL H     IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct:    95 GMRVLVDAREKL-H-----IPWGDNKNQVHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 148

Query:    98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
             +++LWDD  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct:   149 IRALWDDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 201

Query:   158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
              TKGI E+   I N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR 
Sbjct:   202 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRL 261

Query:   218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
             TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++    SI ++F EFEGDP  +
Sbjct:   262 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 319

Query:   278 QAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
             + VQ FL+  F+  +RD++ +PL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct:   320 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 377

GO:0001525 "angiogenesis" evidence=ISO

GO:0001569 "patterning of blood vessels" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007189 "adenylate cyclase-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0007266 "Rho protein signal transduction" evidence=ISO

GO:0008360 "regulation of cell shape" evidence=ISO

GO:0030154 "cell differentiation" evidence=ISO

GO:0030168 "platelet activation" evidence=ISO

GO:0030334 "regulation of cell migration" evidence=ISO

GO:0031526 "brush border membrane" evidence=IDA

GO:0031584 "activation of phospholipase D activity" evidence=IMP

GO:0031752 "D5 dopamine receptor binding" evidence=IPI

GO:0001664 "G-protein coupled receptor binding" evidence=IMP

GO:0031702 "type 1 angiotensin receptor binding" evidence=IMP

UNIPROTKB|F1LNG7 Gna13 "Protein Gna13" [Rattus norvegicus (taxid:10116)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 162/298 (54%), Positives = 218/298 (73%)

Query:    44 GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
             GM+VL+DAR KL H     IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct:    15 GMRVLVDAREKL-H-----IPWGDNKNQVHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 68

Query:    98 LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
             +++LWDD  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct:    69 IRALWDDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 121

Query:   158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
              TKGI E+   I N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR 
Sbjct:   122 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRL 181

Query:   218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
             TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++    SI ++F EFEGDP  +
Sbjct:   182 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 239

Query:   278 QAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
             + VQ FL+  F+  +RD++ +PL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct:   240 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 297

GO:0001664 "G-protein coupled receptor binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27600	GNA12_MOUSE	No assigned EC number	0.5767	0.8263	0.7282	yes	N/A
P16894	GPA1_DICDI	No assigned EC number	0.4067	0.8203	0.7696	yes	N/A
P25157	GNAL_DROME	No assigned EC number	0.5187	0.8293	0.6061	yes	N/A
Q19572	GPA12_CAEEL	No assigned EC number	0.4814	0.8353	0.7859	yes	N/A
Q63210	GNA12_RAT	No assigned EC number	0.5767	0.8263	0.7282	yes	N/A
Q03113	GNA12_HUMAN	No assigned EC number	0.5767	0.8263	0.7244	yes	N/A
Q00743	GPA1_EMENI	No assigned EC number	0.3964	0.8023	0.7592	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	334
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	1e-118
smart00275	342	smart00275, G_alpha, G protein alpha subunit	1e-110
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	1e-101
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-11
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	9e-10
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-09
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	3e-07
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-06
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	4e-06
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	8e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	9e-06
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	2e-05
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	5e-05
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	1e-04
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-04
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	5e-04

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score =  343 bits (882), Expect = e-118
 Identities = 122/285 (42%), Positives = 166/285 (58%), Gaps = 16/285 (5%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
            MK L+ A   L       IP+ +  N   A+KI         +  L     + +K LW 
Sbjct: 47  SMKALLRAMETL------NIPYGDPENEKDAKKILSLAPRA-EEGPLPPELAEAIKRLWK 99

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D  I+  ++RR+EYQL DS +YF DN DRIS         DYIP+ +DIL +R  T GI 
Sbjct: 100 DPGIQACYDRRNEYQLNDSAKYFLDNLDRISDP-------DYIPTEQDILRSRVKTTGII 152

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           E    I N+ F   DVGGQRS+R+KW  CF+ VT+I+F+V+ SEYDQ LVED   NR+ E
Sbjct: 153 ETDFSIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRMQE 212

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           S  +FD+I N+  F N S ILFLNK DL  EK++ S   + ++FP++ G P D +    +
Sbjct: 213 SLKLFDSICNSRWFANTSIILFLNKKDLFEEKIKKS--PLTDYFPDYTGPPNDYEEAAKY 270

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL 328
           +   F  + R+  K ++ HFT A DTENI+ VF+AVK+ IL  NL
Sbjct: 271 IKKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNL 315

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score =  324 bits (832), Expect = e-110
 Identities = 118/291 (40%), Positives = 170/291 (58%), Gaps = 18/291 (6%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDN-NTCIDSRLFSTYVDELKSLW 102
            MK L+DA        +  IP+++  + +    I +  N     ++ L       +K+LW
Sbjct: 68  SMKALVDAM------EELNIPFEDPESILDIRIITEQFNKTDETENVLPKEIAKAIKALW 121

Query: 103 DDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGI 162
            D  I++ + RR+E+QL DS  YF DN DRI          DY+P+ +DIL +R  T GI
Sbjct: 122 KDEGIQECYRRRNEFQLNDSASYFLDNIDRIGDP-------DYVPTEQDILRSRVPTTGI 174

Query: 163 TEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222
            E   ++  + F   DVGGQRS+R+KW  CFD+VT+I+F V+ SEYDQ L ED  TNR+ 
Sbjct: 175 QETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQ 234

Query: 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQT 282
           ES N+F++I N+  F N S ILFLNK DL  EK++         FP+++G P D +A   
Sbjct: 235 ESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDY--FPDYKG-PNDYEAAAK 291

Query: 283 FLLNYF-KAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM 332
           F+   F +  +   +K ++HHFT A DT NI++VF+AVK+ IL RNL+D  
Sbjct: 292 FIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDAG 342

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score =  301 bits (774), Expect = e-101
 Identities = 117/293 (39%), Positives = 175/293 (59%), Gaps = 16/293 (5%)

Query: 45  MKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSLW 102
           +K L++A   L    +         N   A+K+    ++     ++R      +++K LW
Sbjct: 50  LKTLLEALENL----EIESSNSKPENEEIAKKLKSILDSLLDVDETRFSEELAEDIKELW 105

Query: 103 DDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGI 162
           +D  I++ + R +E+QL DS +YF DN DRI+         DY+P+++DIL AR  T GI
Sbjct: 106 NDPGIQEVYNRSNEFQLSDSAKYFLDNLDRIASP-------DYVPTDQDILRARVKTTGI 158

Query: 163 TEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH 222
            E       + F   DVGGQRS+R+KW  CF+ VT+I+F+VS SEYDQ L ED  TNRL 
Sbjct: 159 IETKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLE 218

Query: 223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQT 282
           ES N+F+ I N+  F+N   ILFLNK DL  EKL+  K  ++++FPE+EGDP D ++   
Sbjct: 219 ESLNLFEEICNSPWFKNTPIILFLNKKDLFEEKLK--KGPLSDYFPEYEGDPNDYESASK 276

Query: 283 FLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           ++ N F  + ++  ++ ++ HFT A DTEN++ VF AVK+ IL  NL++  L 
Sbjct: 277 YIRNKFLELNKNNSERKIYTHFTNATDTENVRFVFEAVKDIILQNNLKESGLL 329

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   N+ F   DVGGQ   R  W   +++   ++F+V SS        DR   R+ E++
Sbjct: 37  TVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSS--------DRE--RIEEAK 86

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDLLA 253
           N    ++N    +    ++  NK DL  
Sbjct: 87  NELHKLLNEEELKGAPLLILANKQDLPG 114

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ S R  W   F +  +++F+V S+        DR  
Sbjct: 45  TIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSA--------DR-- 94

Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
           +R+ E++     ++N     +   ++  NK DL
Sbjct: 95  DRIEEAKEELHALLNEEELADAPLLILANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T G+   TI +     +F D+GGQ   R  W + +     +++++ S+  D+       
Sbjct: 37  PTVGLNIGTIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDST--DRE------ 88

Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
             R +ES++ F+ +INN     V  ++  NK DL
Sbjct: 89  --RFNESKSAFEKVINNEALEGVPLLVLANKQDL 120

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
           + I N+ F   D+GG    RR W   F  V  I+FLV +++            R  ES+ 
Sbjct: 58  LTIGNVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADP----------ERFQESKE 107

Query: 227 IFDTIINNVIFRNVSFILFLNKTDL 251
             D+++N+    NV  ++  NK D 
Sbjct: 108 ELDSLLNDEELANVPILILGNKIDK 132

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 148 SNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSE 207
           +++DI H    T+G     +          D+GGQR  R  W   F++   +++++ S+ 
Sbjct: 36  ASEDISHI-TPTQGFNIKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSA- 93

Query: 208 YDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL 252
                  DR+  R  E+      ++       V  ++F NK DLL
Sbjct: 94  -------DRK--RFEEAGQELVELLEEEKLAGVPVLVFANKQDLL 129

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   +     ++F+V S+        DR  
Sbjct: 40  TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSA--------DR-- 89

Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
           +R+ E+R     IIN+   R+   ++F NK DL
Sbjct: 90  DRIDEARQELHRIINDREMRDALLLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)

Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
           DVGGQ   R  W    ++   ++++V SS+            RL ES+     I+ N   
Sbjct: 50  DVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA----------RLDESQKELKHILKNEHI 99

Query: 238 RNVSFILFLNKTDL 251
           + V  +L  NK DL
Sbjct: 100 KGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 45.3 bits (107), Expect = 8e-06
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 10/100 (10%)

Query: 151 DILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ 210
           D L   + T+  T   + I NI F   D+GG +  RR W   F  V  I++LV + + + 
Sbjct: 40  DRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE- 98

Query: 211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250
                    R  ES+   D ++++     V F++  NK D
Sbjct: 99  ---------RFAESKRELDALLSDEELATVPFLILGNKID 129

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 45.3 bits (107), Expect = 9e-06
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   NI F   DVGGQ   R  W   + +   ++F+V S++ D         
Sbjct: 44  TIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD--------- 94

Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     ++N    R+   ++F NK DL
Sbjct: 95  -RIDEAREELHRMLNEDELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   NI F   DVGGQ   R  W   F +   ++F+V S++ +          R+ E+R
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE----------RIGEAR 87

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
                ++N    R+   ++F NK DL
Sbjct: 88  EELQRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   NI F   DVGGQ   R  W   F +   ++F+V S++ D         
Sbjct: 48  TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--------- 98

Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R+    ++N    R+   ++F NK DL
Sbjct: 99  -RVVEARDELHRMLNEDELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   + +   ++F+V S++ +         
Sbjct: 48  TIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE--------- 98

Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ ++R   + +++    R+   ++F NK DL
Sbjct: 99  -RIGDAREELERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 10/85 (11%)

Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
           IV  NI FL  D+GGQ S R  W   + +  +++ ++ S+        DR   RL  ++ 
Sbjct: 54  IVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDST--------DR--ERLPLTKE 103

Query: 227 IFDTIINNVIFRNVSFILFLNKTDL 251
               ++ +   R    ++  NK DL
Sbjct: 104 ELYKMLAHEDLRKAVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 10/74 (13%)

Query: 178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF 237
           DVGGQ+S R  W   F+S  +++++V SS        DR   RL + +     ++     
Sbjct: 64  DVGGQKSLRSYWRNYFESTDALIWVVDSS--------DRA--RLEDCKRELQKLLVEERL 113

Query: 238 RNVSFILFLNKTDL 251
              + ++F NK DL
Sbjct: 114 AGATLLIFANKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
KOG0082|consensus	354		100.0
KOG0085|consensus	359		100.0
KOG0099|consensus	379		100.0
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	100.0
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	100.0
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	100.0
KOG0071|consensus	180		99.91
KOG0070|consensus	181		99.9
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.87
KOG0084|consensus	205		99.86
PLN00223	181	ADP-ribosylation factor; Provisional	99.86
KOG0073|consensus	185		99.85
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.83
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.82
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.82
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.81
KOG0075|consensus	186		99.81
KOG0092|consensus	200		99.81
PTZ00133	182	ADP-ribosylation factor; Provisional	99.81
KOG0072|consensus	182		99.8
KOG0078|consensus	207		99.8
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.79
KOG0094|consensus	221		99.78
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.78
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.78
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.78
PTZ00099	176	rab6; Provisional	99.78
KOG0076|consensus	197		99.78
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.77
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.76
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.76
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.75
KOG0093|consensus	193		99.75
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.75
KOG0087|consensus	222		99.75
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.75
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.75
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.74
KOG0098|consensus	216		99.74
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.74
KOG0079|consensus	198		99.73
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.73
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.73
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.73
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.73
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.72
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.72
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.72
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.72
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.72
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.72
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.72
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.71
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.71
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.71
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.71
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.7
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.7
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.7
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.7
KOG0080|consensus	209		99.69
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.69
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.69
KOG0074|consensus	185		99.69
PTZ00369	189	Ras-like protein; Provisional	99.69
KOG0095|consensus	213		99.68
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.68
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.67
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.67
KOG0086|consensus	214		99.67
KOG0091|consensus	213		99.67
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.66
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.66
KOG0081|consensus	219		99.66
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.66
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.66
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.66
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.66
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.66
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.66
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.65
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.65
KOG0394|consensus	210		99.65
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.65
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.64
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.64
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.64
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.64
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.63
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.63
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.63
KOG0083|consensus	192		99.63
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.63
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.62
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.62
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.62
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.62
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.61
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.61
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.6
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.6
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.59
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.59
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.59
PLN03108	210	Rab family protein; Provisional	99.58
KOG0395|consensus	196		99.58
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.58
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.58
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.57
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.57
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.57
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.57
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.57
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.56
PLN03110	216	Rab GTPase; Provisional	99.56
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.56
KOG0088|consensus	218		99.56
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.56
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.56
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.56
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.55
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.54
KOG0097|consensus	215		99.53
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.53
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.53
PLN03118	211	Rab family protein; Provisional	99.53
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.53
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.49
KOG0393|consensus	198		99.48
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.48
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.48
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.46
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.46
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.45
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.44
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.44
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.42
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.37
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.37
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.36
KOG0077|consensus	193		99.34
PLN00023	334	GTP-binding protein; Provisional	99.33
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.33
COG1100	219	GTPase SAR1 and related small G proteins [General	99.32
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.29
KOG4252|consensus	246		99.29
KOG1673|consensus	205		99.24
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.24
cd00881	189	GTP_translation_factor GTP translation factor fami	99.2
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.16
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.14
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.14
PRK12299	335	obgE GTPase CgtA; Reviewed	99.14
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.12
KOG0096|consensus	216		99.12
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.09
PRK04213	201	GTP-binding protein; Provisional	99.09
COG2229	187	Predicted GTPase [General function prediction only	99.08
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.07
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.07
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.06
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.05
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.03
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.0
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.0
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.99
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	98.98
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.97
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.97
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.96
PRK05306	787	infB translation initiation factor IF-2; Validated	98.95
PRK03003	472	GTP-binding protein Der; Reviewed	98.94
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.94
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.94
KOG3883|consensus	198		98.92
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.91
PRK05433	600	GTP-binding protein LepA; Provisional	98.91
PRK03003	472	GTP-binding protein Der; Reviewed	98.9
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.9
PRK10218	607	GTP-binding protein; Provisional	98.9
PRK15494	339	era GTPase Era; Provisional	98.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.89
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.88
CHL00189	742	infB translation initiation factor 2; Provisional	98.88
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.86
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.86
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	98.84
PRK12296	500	obgE GTPase CgtA; Reviewed	98.83
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.83
PRK11058	426	GTPase HflX; Provisional	98.82
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.8
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.79
PRK12297	424	obgE GTPase CgtA; Reviewed	98.79
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.79
PRK15467	158	ethanolamine utilization protein EutP; Provisional	98.77
PRK00093	435	GTP-binding protein Der; Reviewed	98.73
PRK00093	435	GTP-binding protein Der; Reviewed	98.72
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.72
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.72
PRK13351	687	elongation factor G; Reviewed	98.72
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.7
KOG4423|consensus	229		98.69
PRK12317	425	elongation factor 1-alpha; Reviewed	98.68
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.64
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.63
KOG0090|consensus	238		98.63
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.63
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.58
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.54
PRK12298	390	obgE GTPase CgtA; Reviewed	98.54
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.53
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.53
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.51
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.51
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.5
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.49
PRK04004	586	translation initiation factor IF-2; Validated	98.49
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.49
PRK12740	668	elongation factor G; Reviewed	98.48
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.47
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.45
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.44
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.44
KOG0462|consensus	650		98.43
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.41
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.36
PRK00089	292	era GTPase Era; Reviewed	98.36
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.3
PRK14845	1049	translation initiation factor IF-2; Provisional	98.3
PRK12736	394	elongation factor Tu; Reviewed	98.29
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.27
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.25
PRK12739	691	elongation factor G; Reviewed	98.24
PRK13768	253	GTPase; Provisional	98.22
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.22
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.2
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.16
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.14
PLN00043	447	elongation factor 1-alpha; Provisional	98.1
PRK12735	396	elongation factor Tu; Reviewed	98.09
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.07
COG1160	444	Predicted GTPases [General function prediction onl	98.03
PTZ00141	446	elongation factor 1- alpha; Provisional	98.01
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.0
CHL00071	409	tufA elongation factor Tu	97.99
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	97.98
KOG3886|consensus	295		97.94
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.93
COG0486	454	ThdF Predicted GTPase [General function prediction	97.92
PLN03126	478	Elongation factor Tu; Provisional	97.88
PRK00049	396	elongation factor Tu; Reviewed	97.87
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.86
COG1084	346	Predicted GTPase [General function prediction only	97.84
PLN03127	447	Elongation factor Tu; Provisional	97.84
PRK09866	741	hypothetical protein; Provisional	97.82
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.81
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.81
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.77
PRK00007	693	elongation factor G; Reviewed	97.75
KOG1144|consensus	1064		97.73
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.71
PRK00098	298	GTPase RsgA; Reviewed	97.68
KOG1145|consensus	683		97.63
KOG1490|consensus	620		97.62
COG1159	298	Era GTPase [General function prediction only]	97.59
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.56
COG1160	444	Predicted GTPases [General function prediction onl	97.54
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.53
PRK12289	352	GTPase RsgA; Reviewed	97.5
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	97.5
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	97.46
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.43
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.39
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.38
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.27
KOG1489|consensus	366		97.23
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.18
KOG1707|consensus	625		97.07
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.06
COG2262	411	HflX GTPases [General function prediction only]	97.05
COG0536	369	Obg Predicted GTPase [General function prediction	96.97
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	96.97
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	96.95
PTZ00416	836	elongation factor 2; Provisional	96.94
PRK12288	347	GTPase RsgA; Reviewed	96.91
PRK13796	365	GTPase YqeH; Provisional	96.77
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.75
PLN00116	843	translation elongation factor EF-2 subunit; Provis	96.74
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.67
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	96.61
PRK07560	731	elongation factor EF-2; Reviewed	96.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.55
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.54
KOG1191|consensus	531		96.35
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.35
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.32
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	96.26
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	96.18
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.97
KOG1532|consensus	366		95.96
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	95.95
PRK09602	396	translation-associated GTPase; Reviewed	95.94
KOG0458|consensus	603		95.67
PRK01889	356	GTPase RsgA; Reviewed	95.65
PRK09563	287	rbgA GTPase YlqF; Reviewed	95.62
COG0218	200	Predicted GTPase [General function prediction only	95.6
KOG1423|consensus	379		95.57
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	95.52
KOG0705|consensus	749		95.45
COG3276	447	SelB Selenocysteine-specific translation elongatio	95.2
KOG3887|consensus	347		94.85
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	94.79
COG1163	365	DRG Predicted GTPase [General function prediction	94.39
KOG0468|consensus	971		94.13
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	94.11
COG1162	301	Predicted GTPases [General function prediction onl	93.61
KOG0464|consensus	753		93.55
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	93.52
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	92.36
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	92.2
COG0050	394	TufB GTPases - translation elongation factors [Tra	91.83
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	91.27
KOG0461|consensus	522		91.26
COG3596	296	Predicted GTPase [General function prediction only	90.89
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	89.92
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	89.81
KOG0467|consensus	887		89.48
KOG0459|consensus	501		89.39
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	89.0
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	88.74
KOG0465|consensus	721		88.52
COG5258	527	GTPBP1 GTPase [General function prediction only]	88.2
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	87.45
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	86.84
KOG3905|consensus	473		86.27
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	83.47
KOG1424|consensus	562		80.98
cd03110	179	Fer4_NifH_child This protein family's function is	80.89

>KOG0082|consensus

Probab=100.00  E-value=4.1e-82  Score=598.44  Aligned_cols=304  Identities=38%  Similarity=0.651  Sum_probs=291.8

Q ss_pred             eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651          13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS   92 (334)
Q Consensus        13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   92 (334)
                      -||.|||.+||+++|+..+|+  +||.|++++|.+|++||..+      ++++.+|..+..+..++.........+++++
T Consensus        51 KQmkilh~~gfs~ee~~~~r~--~I~~N~~~~~~~ll~a~~~~------~i~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  122 (354)
T KOG0082|consen   51 KQMKILHGDGFSEEELLEYRP--VIYSNIIQSLKALLRAMETL------GINLDDPERENDAQKLTLLADAAEELGVFSP  122 (354)
T ss_pred             HHHHHHhcCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh------cCCCCChhhhhHHHHHHHhhhcccccccCCH
Confidence            489999999999999999999  99999999999999999999      9999999999888888754443312368999


Q ss_pred             HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651          93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI  172 (334)
Q Consensus        93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~  172 (334)
                      |++++|+.||+||+||+||.|+++|+|+|++.|||++++||.+       |+|+||++|||++|+||+||.+..|.+++.
T Consensus       123 e~~~~i~~lW~d~~Iq~~~~r~~e~~l~Dsa~Yfl~~l~rI~~-------~~Y~PT~~DIL~~R~~T~GI~e~~F~~k~~  195 (354)
T KOG0082|consen  123 ELAEAIKELWKDPGIQACYERRREFQLNDSAKYFLENLDRISS-------PDYVPTEQDILRSRVPTTGIVEVEFTIKGL  195 (354)
T ss_pred             HHHHHHHHHHcCHHHHHHHHcCCcCCCCccHHHHHHhHHHhcC-------CCCCCCHHHHHhhccCcCCeeEEEEEeCCC
Confidence            9999999999999999999999999999999999999999999       999999999999999999999999999999


Q ss_pred             ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      +++++||||||++|+||+|||++|++||||+++|+|||++.||..+|||.||+++|++|||++||.+++||||+||.|||
T Consensus       196 ~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLF  275 (354)
T KOG0082|consen  196 KFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLF  275 (354)
T ss_pred             ceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM  332 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~  332 (334)
                      +||+  ...+++.|||||.|. +++++|.+||+.+|.++++...+++|+|+|||+|++||+.||++|.++|+++||+.+|
T Consensus       276 eEKi--~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nlk~~g  352 (354)
T KOG0082|consen  276 EEKI--KKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNLKDAG  352 (354)
T ss_pred             HHHh--ccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999  999999999999999 8888999999999999998877899999999999999999999999999999999999


Q ss_pred             CC
Q psy3651         333 LQ  334 (334)
Q Consensus       333 l~  334 (334)
                      |+
T Consensus       353 l~  354 (354)
T KOG0082|consen  353 LI  354 (354)
T ss_pred             CC
Confidence            84

>KOG0085|consensus

Probab=100.00  E-value=4.6e-79  Score=539.32  Aligned_cols=302  Identities=42%  Similarity=0.703  Sum_probs=292.7

Q ss_pred             eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651          13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS   92 (334)
Q Consensus        13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   92 (334)
                      -+|-|||+.||++++++.++.  .+|.||+.+|+++|+||+.|      .|++..++|.++|..+++.+...  -+.|..
T Consensus        57 kqmriihg~gyseedrkgf~~--lvyqnif~amqaMIrAMetL------~I~y~~e~nk~~A~~vrevd~ek--Vttfe~  126 (359)
T KOG0085|consen   57 KQMRIIHGAGYSEEDRKGFTK--LVYQNIFTAMQAMIRAMETL------KIPYKREENKAHASLVREVDVEK--VTTFEK  126 (359)
T ss_pred             HHHHhhhcCCCChhhhccchH--HHHHHHHHHHHHHHHHHHHh------ccccccccchhhhhHhhhcchHH--hhhhhH
Confidence            368899999999999999999  99999999999999999999      99999999999999998865543  468999


Q ss_pred             HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651          93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI  172 (334)
Q Consensus        93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~  172 (334)
                      .++.+|+.||.|||||+||+||+||||.||++|++.+++||+.       |+|.||.+|+|+.|+||+||.++.|+..++
T Consensus       127 ~yv~aik~LW~D~GIqeCYdRRREyqLsDSakYylsdldria~-------~~ylPTqQDvLRvRvPTTGi~eypfdl~~i  199 (359)
T KOG0085|consen  127 RYVSAIKWLWRDPGIQECYDRRREYQLSDSAKYYLSDLDRIAT-------PGYLPTQQDVLRVRVPTTGIIEYPFDLQKI  199 (359)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHhhcchhhhHHhhhhhhhcC-------cccCcchhhhheeecCcccceecCcchhhh
Confidence            9999999999999999999999999999999999999999999       999999999999999999999999999999


Q ss_pred             ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      .|++.|||||+++|+||+|||+++++|+|++++|+|||+|.|.++.|||+||+.+|..|+..|||.++++|||+||.||+
T Consensus       200 ifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlL  279 (359)
T KOG0085|consen  200 IFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  279 (359)
T ss_pred             eeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM  332 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~  332 (334)
                      ++||  ..+.+.+|||+|.|++.+.++|.+||.++|..+++..++.++.|+|||+|++||+.||.+|+++|++.+|++.+
T Consensus       280 EekI--~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~LkE~N  357 (359)
T KOG0085|consen  280 EEKI--LYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYN  357 (359)
T ss_pred             hhhh--hHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhhHhhc
Confidence            9999  99999999999999999999999999999999988877899999999999999999999999999999999987


Q ss_pred             C
Q psy3651         333 L  333 (334)
Q Consensus       333 l  333 (334)
                      |
T Consensus       358 L  358 (359)
T KOG0085|consen  358 L  358 (359)
T ss_pred             c
Confidence            6

>KOG0099|consensus

Probab=100.00  E-value=2.4e-71  Score=497.21  Aligned_cols=307  Identities=37%  Similarity=0.596  Sum_probs=287.4

Q ss_pred             eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651          13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS   92 (334)
Q Consensus        13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   92 (334)
                      -||-|+|.+||+++|++...+  .|+.||-++|.+|+.||+.+    .|.+++.+|+|+..++.|+...+..  +..+|+
T Consensus        58 KQMRILHvnGF~~~EkreKI~--dI~~Ni~eai~~iv~aM~~l----~p~v~l~~~~~~~~~dYIls~~~~~--~~~~~~  129 (379)
T KOG0099|consen   58 KQMRILHVNGFNDEEKREKIQ--DIKNNIKEAILTIVGAMSNL----VPPVELANPENQFRVDYILSVMNSP--DFDYPP  129 (379)
T ss_pred             hhhheeeecCCChHHHHHhhH--HHHHHHHHHHHHHHHHHhcc----CCCcccCCcccchhHHHHHhcCCCC--cccCCH
Confidence            478899999999999999999  99999999999999999999    6779999999999999999987764  678999


Q ss_pred             HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651          93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI  172 (334)
Q Consensus        93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~  172 (334)
                      |+.+.++.||+|.||++||+|++||||.|+|+|||+++++|.+       ++|+|+.+|+||||+-|+||.++.|.+..+
T Consensus       130 Ef~dHv~~lW~D~Gv~acyeRSnEyqLiDcAqYFLd~~~~i~~-------~~Y~Ps~qDiLrcRvlTsGIfet~FqVdkv  202 (379)
T KOG0099|consen  130 EFYDHVKTLWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------ADYVPSDQDILRCRVLTSGIFETKFQVDKV  202 (379)
T ss_pred             HHHHHHHHHhhhhhHHHHHhccCccchhhHHHHHHHhhheecc-------cCCCCcHHHHHHhhhhccceeeEEEecccc
Confidence            9999999999999999999999999999999999999999999       999999999999999999999999999999


Q ss_pred             ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      +|+++||||||.+|+||+.||.+++|||||++.|+|++++.||+++||+.||+.+|++|+|++|++.+++|||+||+|+.
T Consensus       203 ~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDll  282 (379)
T KOG0099|consen  203 NFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  282 (379)
T ss_pred             ceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhCCCCCCCCc------------cHHHHHHHHHHHHHhhccCCC---CCeEEEEEeeecCchHHHHHH
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQ------------DMQAVQTFLLNYFKAVKRDEK---KPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~------------~~~~~~~fi~~~F~~l~~~~~---~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+|+....+.+.+|||+|.+...            ..-.|+-||+..|+++..+..   +.+|+|+|||+|++||+.||.
T Consensus       283 aeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFn  362 (379)
T KOG0099|consen  283 AEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFN  362 (379)
T ss_pred             HHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHH
Confidence            99996556679999999976411            122456689999999877643   668999999999999999999


Q ss_pred             HHHHHHHHHhhhhccCC
Q psy3651         318 AVKNTILHRNLRDLMLQ  334 (334)
Q Consensus       318 ~v~~~I~~~~l~~~~l~  334 (334)
                      .+.++|.+.+|++.+|+
T Consensus       363 DcrdiIqr~hlrqyeLl  379 (379)
T KOG0099|consen  363 DCRDIIQRMHLRQYELL  379 (379)
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            99999999999999874

>cd00066 G-alpha G protein alpha subunit

Probab=100.00  E-value=3e-70  Score=521.16  Aligned_cols=299  Identities=43%  Similarity=0.735  Sum_probs=285.8

Q ss_pred             eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHH
Q psy3651          14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFST   93 (334)
Q Consensus        14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   93 (334)
                      ||.++|..||+++|+..+|.  +|+.|++++|+.|++||+.+      ++++.+|++...+..++...... ....++++
T Consensus        19 Qmril~~~gfs~~Er~~~~~--~I~~Ni~~~~~~ll~a~~~~------~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~   89 (317)
T cd00066          19 QMKILHGDGFSEEELREYRP--VIYSNILQSMKALLEAMERL------NIPFGDPENEKDAKKILSFAPEL-EEGELPPE   89 (317)
T ss_pred             HHHHhcCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc------CCCCCChhhHHHHHHHHhccccc-cccCCCHH
Confidence            78899999999999999999  99999999999999999999      99999999998888888765432 24579999


Q ss_pred             HHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcc
Q psy3651          94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIP  173 (334)
Q Consensus        94 ~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~  173 (334)
                      +++.|..||+||+||+||.++++++|+|++.|||++++||++       ++|.||.+|++++|.||+|+.+..|.+++..
T Consensus        90 ~~~~i~~lW~d~~iq~~~~~r~e~~l~d~~~yf~~~~~ri~~-------~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~  162 (317)
T cd00066          90 LAEAIKELWKDPGIQACYDRRNEFQLNDSAKYFLDNLDRISD-------PDYIPTEQDILRARVKTTGIVETKFTIKNLK  162 (317)
T ss_pred             HHHHHHHHhCCHHHHHHHHhccccccccchHHHHHhHHHHhC-------CCCCCChhHheeeecccCCeeEEEEEecceE
Confidence            999999999999999999999999999999999999999999       9999999999999999999999999999999


Q ss_pred             eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      +++||+|||+++|++|.+||+++++||||+|+|+||+.+.||+..|||.+|+.+|+++++++++.++|++||+||+|+++
T Consensus       163 ~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~  242 (317)
T cd00066         163 FRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE  242 (317)
T ss_pred             EEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhh
Q psy3651         254 EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD  330 (334)
Q Consensus       254 eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~  330 (334)
                      +|+  +..|+++|||+|.|.++++++|.+||+++|.++.+..++.+|+|+|||+|+++|+.+|+.|.++|++++++.
T Consensus       243 ~ki--~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~l~~  317 (317)
T cd00066         243 EKI--KKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNNLKD  317 (317)
T ss_pred             Hhh--cCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHHhcC
Confidence            999  888999999999998889999999999999999876568999999999999999999999999999998863

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=100.00  E-value=1.4e-69  Score=520.67  Aligned_cols=301  Identities=41%  Similarity=0.696  Sum_probs=283.5

Q ss_pred             eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCC-cCCCcCcH
Q psy3651          14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT-CIDSRLFS   92 (334)
Q Consensus        14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~   92 (334)
                      ||.++|..||+++|+..+|.  +||.|++++|+.|++||+.+      +|+++++++...+..++...... ..+..+++
T Consensus        40 Qmril~~~gfs~~E~~~~~~--~I~~Nii~~~~~ll~a~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (342)
T smart00275       40 QMRILHGDGFSQEERREYRP--LIYSNILESMKALVDAMEEL------NIPFEDPESILDIRIITEQFNKTDETENVLPK  111 (342)
T ss_pred             HHHHhhcCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc------CCCCCChhhHHHHHHHhccccccccccccCCH
Confidence            68899999999999999999  99999999999999999999      99999988877777777653111 12346899


Q ss_pred             HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651          93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI  172 (334)
Q Consensus        93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~  172 (334)
                      ++++.|..||+||+||+||.++++|+|+|++.||+++++||++       |+|+||.+|++++|.||+|+.+..|.+++.
T Consensus       112 e~~~~i~~LW~D~~iq~~~~~~~~~~l~ds~~yf~~~~~ri~~-------~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~  184 (342)
T smart00275      112 EIAKAIKALWKDEGIQECYRRRNEFQLNDSASYFLDNIDRIGD-------PDYVPTEQDILRSRVPTTGIQETAFIVKKL  184 (342)
T ss_pred             HHHHHHHHHHCCHHHHHHHHhccccccccchhHHHHHHHHHhC-------CCCCCCHHHhhheeCCccceEEEEEEECCe
Confidence            9999999999999999999999999999999999999999999       999999999999999999999999999999


Q ss_pred             ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      ++++||+|||+++|++|.+||+++++||||+|+|+|||.++||+..||+.+|+.+|+++++++++.++|++||+||.|+|
T Consensus       185 ~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~  264 (342)
T smart00275      185 FFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF  264 (342)
T ss_pred             EEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhc
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDL  331 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~  331 (334)
                      .+|+  +..++++|||+|+|+ +++++|.+||+++|.++.+. .++.+|+|+|||+|+.+++.+|+.+.++|++++++..
T Consensus       265 ~~Kl--~~~~l~~~fp~y~g~-~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~l~~~  341 (342)
T smart00275      265 EEKI--KKVPLVDYFPDYKGP-NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDA  341 (342)
T ss_pred             HHHh--CCCchhccCCCCCCC-CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999  888999999999997 68999999999999999875 4588999999999999999999999999999999876


Q ss_pred             c
Q psy3651         332 M  332 (334)
Q Consensus       332 ~  332 (334)
                      |
T Consensus       342 ~  342 (342)
T smart00275      342 G  342 (342)
T ss_pred             C
Confidence            5

Subunit of G proteins that contains the guanine nucleotide binding site

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=100.00  E-value=4.6e-66  Score=505.54  Aligned_cols=293  Identities=42%  Similarity=0.718  Sum_probs=261.0

Q ss_pred             eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcC-------CCcchHHHHHHhcccCCCcC
Q psy3651          14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQ-------NDMNAIHAEKIFQFDNNTCI   86 (334)
Q Consensus        14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~-------~~~~~~~~~~i~~~~~~~~~   86 (334)
                      ++.++|..||+++|+..+|+  +|+.|++++|+.|+++|..+      ++++.       ++.+...+..+.........
T Consensus        77 Q~ril~~~~~~~~E~~~~~~--~I~~Nii~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  148 (389)
T PF00503_consen   77 QMRILYGPGFSEEERESYRP--IIYSNIIQSMKQILEALEEL------GIPFSFSESSQLNEENQEIAEKLKEILDPLDS  148 (389)
T ss_dssp             HHHHHHST---HHHHHHTHH--HHHHHHHHHHHHHHHHHHHT------TCH-SSS-TT--STTHHHHHHHHHHHHCTTST
T ss_pred             HHHHHhCCCCchhhhhccee--eEecCchhhHHHHHHHHHHc------CCCccccccccCCHHHHHHHHHHHhhhccccc
Confidence            57789999999999999999  99999999999999999999      88888       67888888888775444321


Q ss_pred             C--------CcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeee
Q psy3651          87 D--------SRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKA  158 (334)
Q Consensus        87 ~--------~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~  158 (334)
                      .        ..+++++++.|..||+||+||++|.++++++|+|+++|||++++||++       ++|+||++|++++|.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~LW~D~~vq~~~~~~~~~~l~d~~~YFl~~l~RI~~-------~~Y~PT~~DIl~~r~~  221 (389)
T PF00503_consen  149 SEFSLASDDNKFPEELAEDIRSLWKDPGVQECYERRNEFQLPDNAKYFLDNLDRIAQ-------PDYIPTDEDILRCRVK  221 (389)
T ss_dssp             TCTC-----HCHHHHHHHHHHHHHHSHHHHHHHGGGGGST--TTHHHHHTTHHHHHS-------TTB---HHHHHHS---
T ss_pred             cccccccccccCCHHHHHHHHHHHCChhHHHHHHhhhcccccccHHHHhhhhhhhcC-------CCccCCCCCeeeecCC
Confidence            1        148999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             ecceeEEEEEe-eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         159 TKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       159 T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      |+||.+..|.+ ++..++++|||||+++|+||.|||+++++||||+|+|+|||+++||+++|||.||+.+|+++++++|+
T Consensus       222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~  301 (389)
T PF00503_consen  222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF  301 (389)
T ss_dssp             -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred             CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence            99999999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcchhhhccccch-hhhhCCCCCCC-CccHHHHHHHHHHHHHhhccCCC--CCeEEEEEeeecCchHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTS-IAEHFPEFEGD-PQDMQAVQTFLLNYFKAVKRDEK--KPLFHHFTTAVDTENIK  313 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~-l~~~Fp~y~g~-~~~~~~~~~fi~~~F~~l~~~~~--~~i~~~~tsA~d~~nI~  313 (334)
                      .++|+||||||.|+|++|+  ...+ +++|||+|.|+ +++++.|.+||+++|.++.....  +.+|+|+|||+|+++|+
T Consensus       302 ~~~~iil~lnK~D~f~~Kl--~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~  379 (389)
T PF00503_consen  302 KNTPIILFLNKIDLFEEKL--KKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIR  379 (389)
T ss_dssp             TTSEEEEEEE-HHHHHHHT--TTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHH
T ss_pred             ccCceEEeeecHHHHHHHc--cCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHH
Confidence            9999999999999999999  7777 99999999998 68999999999999999987655  88999999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         314 IVFNAVKNTI  323 (334)
Q Consensus       314 ~vf~~v~~~I  323 (334)
                      .+|+.|.++|
T Consensus       380 ~v~~~v~~~i  389 (389)
T PF00503_consen  380 KVFNAVKDII  389 (389)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHhcCcC
Confidence            9999999986

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0071|consensus

Probab=99.91  E-value=4.5e-24  Score=175.81  Aligned_cols=133  Identities=24%  Similarity=0.403  Sum_probs=121.2

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ..+||+|++...+++++++|.+||+|||.+.|+.|.|||.+..++|||+|.++.          +|++|+.+.+.+++++
T Consensus        44 ~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~----------dr~eeAr~ELh~ii~~  113 (180)
T KOG0071|consen   44 TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR----------DRIEEARNELHRIIND  113 (180)
T ss_pred             ccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccch----------hhHHHHHHHHHHHhCC
Confidence            457999999999999999999999999999999999999999999999999998          9999999999999999


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      +.+.++|+++++||+|+..+.   +..+++++                      .++.+.++++++...+||.++.+..+
T Consensus       114 ~em~~~~~LvlANkQDlp~A~---~pqei~d~----------------------leLe~~r~~~W~vqp~~a~~gdgL~e  168 (180)
T KOG0071|consen  114 REMRDAIILILANKQDLPDAM---KPQEIQDK----------------------LELERIRDRNWYVQPSCALSGDGLKE  168 (180)
T ss_pred             HhhhcceEEEEecCccccccc---CHHHHHHH----------------------hccccccCCccEeeccccccchhHHH
Confidence            999999999999999998873   55556654                      55666667899999999999999999


Q ss_pred             HHHHHHHH
Q psy3651         315 VFNAVKNT  322 (334)
Q Consensus       315 vf~~v~~~  322 (334)
                      -|.|+...
T Consensus       169 glswlsnn  176 (180)
T KOG0071|consen  169 GLSWLSNN  176 (180)
T ss_pred             HHHHHHhh
Confidence            99998763

>KOG0070|consensus

Probab=99.90  E-value=8.7e-24  Score=182.28  Aligned_cols=134  Identities=25%  Similarity=0.401  Sum_probs=121.3

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      +||+|.+.+.+++++++|++||+|||.+.|+.|.+||.+.+++|||+|.+|.          .|+.|+.+.+..+++.+.
T Consensus        46 vPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr----------~Ri~eak~eL~~~l~~~~  115 (181)
T KOG0070|consen   46 VPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDR----------ERIEEAKEELHRMLAEPE  115 (181)
T ss_pred             CCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcH----------HHHHHHHHHHHHHHcCcc
Confidence            8999999999999999999999999999999999999999999999999998          999999999999999998


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..++|+++++||+|+..+ +  ....+++.                      +++.....+.++++.|||.+|+++.+.+
T Consensus       116 l~~~~llv~aNKqD~~~a-l--s~~ei~~~----------------------L~l~~l~~~~w~iq~~~a~~G~GL~egl  170 (181)
T KOG0070|consen  116 LRNAPLLVFANKQDLPGA-L--SAAEITNK----------------------LGLHSLRSRNWHIQSTCAISGEGLYEGL  170 (181)
T ss_pred             cCCceEEEEechhhcccc-C--CHHHHHhH----------------------hhhhccCCCCcEEeeccccccccHHHHH
Confidence            999999999999999876 3  44445443                      4555555688999999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      +|+.+.+..
T Consensus       171 ~wl~~~~~~  179 (181)
T KOG0070|consen  171 DWLSNNLKK  179 (181)
T ss_pred             HHHHHHHhc
Confidence            999998764

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.87  E-value=2.1e-21  Score=169.95  Aligned_cols=133  Identities=24%  Similarity=0.373  Sum_probs=115.5

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..||+|++...+.+++..+.+||+|||.+.|+.|.+||.++++||||+|.++.          +++.++...+.++++++
T Consensus        42 ~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~----------~~l~e~~~~L~~ll~~~  111 (175)
T PF00025_consen   42 TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDP----------ERLQEAKEELKELLNDP  111 (175)
T ss_dssp             EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGG----------GGHHHHHHHHHHHHTSG
T ss_pred             cCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccc----------eeecccccchhhhcchh
Confidence            68999999999999999999999999999999999999999999999999997          89999999999999998


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~  314 (334)
                      ...++|++|++||+|+... +  ....+.+.                      ..+..- ..+++.++.|||.+|+|+.+
T Consensus       112 ~~~~~piLIl~NK~D~~~~-~--~~~~i~~~----------------------l~l~~l~~~~~~~v~~~sa~~g~Gv~e  166 (175)
T PF00025_consen  112 ELKDIPILILANKQDLPDA-M--SEEEIKEY----------------------LGLEKLKNKRPWSVFSCSAKTGEGVDE  166 (175)
T ss_dssp             GGTTSEEEEEEESTTSTTS-S--THHHHHHH----------------------TTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred             hcccceEEEEeccccccCc-c--hhhHHHhh----------------------hhhhhcccCCceEEEeeeccCCcCHHH
Confidence            8899999999999998654 2  33334433                      222222 24789999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         315 VFNAVKNTI  323 (334)
Q Consensus       315 vf~~v~~~I  323 (334)
                      .|+|+.+.|
T Consensus       167 ~l~WL~~~~  175 (175)
T PF00025_consen  167 GLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG0084|consensus

Probab=99.86  E-value=3.4e-21  Score=167.55  Aligned_cols=133  Identities=20%  Similarity=0.230  Sum_probs=105.0

Q ss_pred             eeeecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         156 RKATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       156 ~~~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      +..|+|++..  .+++.  .++++||||+||+++|....+||++|+|||||+|+++.          .+|.....|++++
T Consensus        38 ~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~----------~SF~~v~~Wi~Ei  107 (205)
T KOG0084|consen   38 YISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ----------ESFNNVKRWIQEI  107 (205)
T ss_pred             hcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH----------HHhhhHHHHHHHh
Confidence            4678898844  44443  48999999999999999999999999999999999997          6677767777776


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeE-EEEEeeecCc
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLF-HHFTTAVDTE  310 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~-~~~tsA~d~~  310 (334)
                      -.+ ...+.|.+||+||+|+.+.+.  -                +.+.|..|..+          .++. +.+|||++..
T Consensus       108 ~~~-~~~~v~~lLVGNK~Dl~~~~~--v----------------~~~~a~~fa~~----------~~~~~f~ETSAK~~~  158 (205)
T KOG0084|consen  108 DRY-ASENVPKLLVGNKCDLTEKRV--V----------------STEEAQEFADE----------LGIPIFLETSAKDST  158 (205)
T ss_pred             hhh-ccCCCCeEEEeeccccHhhee--c----------------CHHHHHHHHHh----------cCCcceeecccCCcc
Confidence            554 457789999999999988765  1                23344333322          2344 8999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q psy3651         311 NIKIVFNAVKNTILHRN  327 (334)
Q Consensus       311 nI~~vf~~v~~~I~~~~  327 (334)
                      ||+++|..+...|.++.
T Consensus       159 NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  159 NVEDAFLTLAKELKQRK  175 (205)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999888764

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.86  E-value=3.3e-21  Score=169.49  Aligned_cols=135  Identities=24%  Similarity=0.412  Sum_probs=109.8

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|++...+..+++.+++||++||+.++..|.+||++++++|||+|+++.          .++.++..++..+++.+.
T Consensus        46 ~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~----------~s~~~~~~~l~~~l~~~~  115 (181)
T PLN00223         46 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------DRVVEARDELHRMLNEDE  115 (181)
T ss_pred             cCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcH----------HHHHHHHHHHHHHhcCHh
Confidence            4677887777788889999999999999999999999999999999999998          788899999999888777


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..++|++|++||+|+..+ .  ....+.+.                      .++.....+.++++.|||++|+||.++|
T Consensus       116 ~~~~piilv~NK~Dl~~~-~--~~~~~~~~----------------------l~l~~~~~~~~~~~~~Sa~~g~gv~e~~  170 (181)
T PLN00223        116 LRDAVLLVFANKQDLPNA-M--NAAEITDK----------------------LGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
T ss_pred             hCCCCEEEEEECCCCCCC-C--CHHHHHHH----------------------hCccccCCCceEEEeccCCCCCCHHHHH
Confidence            788999999999998653 2  22222221                      2332222356777889999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         317 NAVKNTILHR  326 (334)
Q Consensus       317 ~~v~~~I~~~  326 (334)
                      +|+.+.+.++
T Consensus       171 ~~l~~~~~~~  180 (181)
T PLN00223        171 DWLSNNIANK  180 (181)
T ss_pred             HHHHHHHhhc
Confidence            9999888764

>KOG0073|consensus

Probab=99.85  E-value=6.7e-21  Score=160.92  Aligned_cols=137  Identities=20%  Similarity=0.320  Sum_probs=118.1

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ...||.|+..++..++++.+++||+|||...|+.|.+||+.++|+|||+|+||.          -||++....+.+++..
T Consensus        43 ~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~----------~r~~e~~~~L~~lL~e  112 (185)
T KOG0073|consen   43 TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDR----------MRMQECKQELTELLVE  112 (185)
T ss_pred             ccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchH----------HHHHHHHHHHHHHHhh
Confidence            458999999999999999999999999999999999999999999999999998          8999999999999998


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .....+|++|++||+|+..+ +  ....+...+                      ++.. .+...+....|||.+|+++.
T Consensus       113 erlaG~~~Lvlank~dl~~~-l--~~~~i~~~~----------------------~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen  113 ERLAGAPLLVLANKQDLPGA-L--SLEEISKAL----------------------DLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             hhhcCCceEEEEecCcCccc-c--CHHHHHHhh----------------------CHHHhccccCceEEEEeccccccHH
Confidence            88899999999999999754 3  333333221                      1111 13467889999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         314 IVFNAVKNTILHR  326 (334)
Q Consensus       314 ~vf~~v~~~I~~~  326 (334)
                      +.|+|+.+.+..+
T Consensus       168 ~gidWL~~~l~~r  180 (185)
T KOG0073|consen  168 EGIDWLCDDLMSR  180 (185)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998874

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.83  E-value=4.4e-20  Score=161.13  Aligned_cols=131  Identities=24%  Similarity=0.411  Sum_probs=105.3

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|++...+..+++.+.+||++||..++..|.+||++++++|||+|+++.          .++.++.+++..+++....
T Consensus        43 ~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~----------~s~~~~~~~l~~~~~~~~~  112 (175)
T smart00177       43 PTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDR----------DRIDEAREELHRMLNEDEL  112 (175)
T ss_pred             CccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHhhCHhh
Confidence            567777666677789999999999999999999999999999999999997          7889999999999876656


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .++|++|++||+|+... .  ....+.+.                      .++.....+.++++.|||++|.||.++|+
T Consensus       113 ~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~  167 (175)
T smart00177      113 RDAVILVFANKQDLPDA-M--KAAEITEK----------------------LGLHSIRDRNWYIQPTCATSGDGLYEGLT  167 (175)
T ss_pred             cCCcEEEEEeCcCcccC-C--CHHHHHHH----------------------hCccccCCCcEEEEEeeCCCCCCHHHHHH
Confidence            78999999999998643 2  22222221                      22222334667888899999999999999


Q ss_pred             HHHHHH
Q psy3651         318 AVKNTI  323 (334)
Q Consensus       318 ~v~~~I  323 (334)
                      |+.+.+
T Consensus       168 ~l~~~~  173 (175)
T smart00177      168 WLSNNL  173 (175)
T ss_pred             HHHHHh
Confidence            998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04120 Rab12 Rab12 subfamily

Probab=99.82  E-value=2.9e-19  Score=160.11  Aligned_cols=141  Identities=15%  Similarity=0.170  Sum_probs=101.8

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.++|.||..         .++....+.+++  +++++||++||+.++.+|..||++++++|+|+|+++.        
T Consensus        23 ~~f~~~~~~Ti~---------~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~--------   85 (202)
T cd04120          23 DTFCEACKSGVG---------VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK--------   85 (202)
T ss_pred             CCCCCcCCCcce---------eEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH--------
Confidence            556667777642         122233445544  8889999999999999999999999999999999998        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .+++++..|++.+ +.....+.|++|++||+||..++-      +.            .+.+.++..+         .
T Consensus        86 --~Sf~~l~~w~~~i-~~~~~~~~piilVgNK~DL~~~~~------v~------------~~~~~~~a~~---------~  135 (202)
T cd04120          86 --ETFDDLPKWMKMI-DKYASEDAELLLVGNKLDCETDRE------IS------------RQQGEKFAQQ---------I  135 (202)
T ss_pred             --HHHHHHHHHHHHH-HHhCCCCCcEEEEEECcccccccc------cC------------HHHHHHHHHh---------c
Confidence              6777777666644 433446799999999999864321      11            1111111110         1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +++.+++|||++|.||.++|.++.+.+.+.
T Consensus       136 ~~~~~~etSAktg~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         136 TGMRFCEASAKDNFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            246788999999999999999999988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04149 Arf6 Arf6 subfamily

Probab=99.82  E-value=5.9e-20  Score=159.36  Aligned_cols=130  Identities=24%  Similarity=0.399  Sum_probs=103.2

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|++...+...++++++||++|+++++..|..||++++++|||+|+++.          .++.++..++.++++.+.
T Consensus        38 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~----------~s~~~~~~~~~~~~~~~~  107 (168)
T cd04149          38 IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR----------DRIDEARQELHRIINDRE  107 (168)
T ss_pred             cCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCch----------hhHHHHHHHHHHHhcCHh
Confidence            3566766666667789999999999999999999999999999999999997          788999999999988766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..++|++|++||+|+... +  ....+.+.                      .++.....+.+.+++|||++|.||.++|
T Consensus       108 ~~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~SAk~g~gv~~~~  162 (168)
T cd04149         108 MRDALLLVFANKQDLPDA-M--KPHEIQEK----------------------LGLTRIRDRNWYVQPSCATSGDGLYEGL  162 (168)
T ss_pred             hcCCcEEEEEECcCCccC-C--CHHHHHHH----------------------cCCCccCCCcEEEEEeeCCCCCChHHHH
Confidence            678999999999998642 2  22222221                      2222223355778999999999999999


Q ss_pred             HHHHH
Q psy3651         317 NAVKN  321 (334)
Q Consensus       317 ~~v~~  321 (334)
                      +|+.+
T Consensus       163 ~~l~~  167 (168)
T cd04149         163 TWLSS  167 (168)
T ss_pred             HHHhc
Confidence            99865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.81  E-value=1.3e-19  Score=155.64  Aligned_cols=130  Identities=24%  Similarity=0.400  Sum_probs=102.3

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.+...+....+.+.+||++||+.++..|.+||++++++|||+|+++.          .++.++.+++.+++..+.
T Consensus        29 ~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~s~~~~~~~~~~~~~~~~   98 (159)
T cd04150          29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERIGEAREELQRMLNEDE   98 (159)
T ss_pred             CCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhcHH
Confidence            3566766666677789999999999999999999999999999999999997          789999999999987766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+... .  ....+..                     + ..+.....+.+.++.+||++|.||+++|
T Consensus        99 ~~~~piilv~NK~Dl~~~-~--~~~~i~~---------------------~-~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          99 LRDAVLLVFANKQDLPNA-M--SAAEVTD---------------------K-LGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             hcCCCEEEEEECCCCCCC-C--CHHHHHH---------------------H-hCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            678999999999998542 1  1111111                     1 1222222356778899999999999999


Q ss_pred             HHHHH
Q psy3651         317 NAVKN  321 (334)
Q Consensus       317 ~~v~~  321 (334)
                      +|+.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>KOG0075|consensus

Probab=99.81  E-value=1.3e-19  Score=150.61  Aligned_cols=133  Identities=20%  Similarity=0.335  Sum_probs=116.6

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..||+|++...++-+++.+.+||+|||+.+|.+|..|++++++|+||+|.++.          ..+.-|...+.+++..|
T Consensus        49 miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~----------~k~~~sr~EL~~LL~k~  118 (186)
T KOG0075|consen   49 MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADP----------DKLEASRSELHDLLDKP  118 (186)
T ss_pred             hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCc----------ccchhhHHHHHHHhcch
Confidence            46899999999999999999999999999999999999999999999999998          78899999999999999


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...++|+++++||.|+..+ +  ....+.+-                      +++....++.+-++.+||++..||+.+
T Consensus       119 ~l~gip~LVLGnK~d~~~A-L--~~~~li~r----------------------mgL~sitdREvcC~siScke~~Nid~~  173 (186)
T KOG0075|consen  119 SLTGIPLLVLGNKIDLPGA-L--SKIALIER----------------------MGLSSITDREVCCFSISCKEKVNIDIT  173 (186)
T ss_pred             hhcCCcEEEecccccCccc-c--cHHHHHHH----------------------hCccccccceEEEEEEEEcCCccHHHH
Confidence            9999999999999999875 4  33333321                      455555668899999999999999999


Q ss_pred             HHHHHHHH
Q psy3651         316 FNAVKNTI  323 (334)
Q Consensus       316 f~~v~~~I  323 (334)
                      .+|+.+.-
T Consensus       174 ~~Wli~hs  181 (186)
T KOG0075|consen  174 LDWLIEHS  181 (186)
T ss_pred             HHHHHHHh
Confidence            99998753

>KOG0092|consensus

Probab=99.81  E-value=3.6e-19  Score=154.41  Aligned_cols=145  Identities=17%  Similarity=0.280  Sum_probs=113.6

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEE--EEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFT--IVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS  205 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~--~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl  205 (334)
                      +.|+..       ..|.+.       ..||+|.....  +.+.+  ++|.||||+||++++.+-+.||+|++++|.|+|+
T Consensus        22 V~Rfvk-------~~F~e~-------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDi   87 (200)
T KOG0092|consen   22 VLRFVK-------DQFHEN-------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDI   87 (200)
T ss_pred             hhhhhh-------Cccccc-------cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEec
Confidence            456666       555543       36788866443  33444  8889999999999999999999999999999999


Q ss_pred             CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL  285 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~  285 (334)
                      ++.          .+|..+..|+.++-..-. +++-|.|+|||+||.+.|    .++              .++|..|-.
T Consensus        88 t~~----------~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R----~V~--------------~~ea~~yAe  138 (200)
T KOG0092|consen   88 TDE----------ESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERR----EVE--------------FEEAQAYAE  138 (200)
T ss_pred             ccH----------HHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcc----ccc--------------HHHHHHHHH
Confidence            998          899999999999876543 788899999999998743    222              233443333


Q ss_pred             HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      +          .++.+++|||+++.||+++|..|.+.|....
T Consensus       139 ~----------~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~  170 (200)
T KOG0092|consen  139 S----------QGLLFFETSAKTGENVNEIFQAIAEKLPCSD  170 (200)
T ss_pred             h----------cCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence            2          4577999999999999999999999887543

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.81  E-value=3.1e-19  Score=156.97  Aligned_cols=134  Identities=21%  Similarity=0.386  Sum_probs=106.1

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|.+...+...++.+++||++||+.++..|.+||++++++|||+|+++.          +++.++..++.++++....
T Consensus        47 ~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~----------~s~~~~~~~l~~~~~~~~~  116 (182)
T PTZ00133         47 PTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR----------ERIGDAREELERMLSEDEL  116 (182)
T ss_pred             CccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhCHhh
Confidence            566766666777889999999999999999999999999999999999997          7788888889988876666


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||.|+.+. +  ....+...                      .++.....+.++++.|||+++.||+++|+
T Consensus       117 ~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~  171 (182)
T PTZ00133        117 RDAVLLVFANKQDLPNA-M--STTEVTEK----------------------LGLHSVRQRNWYIQGCCATTAQGLYEGLD  171 (182)
T ss_pred             cCCCEEEEEeCCCCCCC-C--CHHHHHHH----------------------hCCCcccCCcEEEEeeeCCCCCCHHHHHH
Confidence            78999999999998542 2  11122211                      22222233567778999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         318 AVKNTILHR  326 (334)
Q Consensus       318 ~v~~~I~~~  326 (334)
                      |+.+.+.++
T Consensus       172 ~l~~~i~~~  180 (182)
T PTZ00133        172 WLSANIKKS  180 (182)
T ss_pred             HHHHHHHHh
Confidence            999877664

>KOG0072|consensus

Probab=99.80  E-value=5.6e-20  Score=152.28  Aligned_cols=137  Identities=19%  Similarity=0.322  Sum_probs=117.7

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ...||+|.+...+.+++.++++||.|||-+.|..|..||.+++++|||||.+|.          .|+.-|...|-.++..
T Consensus        45 ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~----------dris~a~~el~~mL~E  114 (182)
T KOG0072|consen   45 TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDR----------DRISIAGVELYSMLQE  114 (182)
T ss_pred             ccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccch----------hhhhhhHHHHHHHhcc
Confidence            457999999999999999999999999999999999999999999999999999          7888999999999999


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      +.+.++.++||+||+|.....   ..++....                      +++.+.+++.+.++.+||+.|+++..
T Consensus       115 ~eLq~a~llv~anKqD~~~~~---t~~E~~~~----------------------L~l~~Lk~r~~~Iv~tSA~kg~Gld~  169 (182)
T KOG0072|consen  115 EELQHAKLLVFANKQDYSGAL---TRSEVLKM----------------------LGLQKLKDRIWQIVKTSAVKGEGLDP  169 (182)
T ss_pred             HhhcCceEEEEeccccchhhh---hHHHHHHH----------------------hChHHHhhheeEEEeeccccccCCcH
Confidence            999999999999999986652   22222111                      34444455778999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         315 VFNAVKNTILHR  326 (334)
Q Consensus       315 vf~~v~~~I~~~  326 (334)
                      .++|+.+.+.++
T Consensus       170 ~~DWL~~~l~~~  181 (182)
T KOG0072|consen  170 AMDWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHHHhcc
Confidence            999999987653

>KOG0078|consensus

Probab=99.80  E-value=4.3e-19  Score=156.30  Aligned_cols=145  Identities=23%  Similarity=0.210  Sum_probs=113.2

Q ss_pred             hHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEe
Q psy3651         129 NWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVS  204 (334)
Q Consensus       129 ~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~d  204 (334)
                      -+.|+..       ..|.++       ...|+||+..  .++++  .+++++|||+||+++|.+...||++|.+|+.|||
T Consensus        28 ~l~rf~d-------~~f~~~-------~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyD   93 (207)
T KOG0078|consen   28 LLLRFSD-------DSFNTS-------FISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYD   93 (207)
T ss_pred             hhhhhhh-------ccCcCC-------ccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEE
Confidence            3567777       666664       3678998854  44444  4889999999999999999999999999999999


Q ss_pred             CCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651         205 SSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL  284 (334)
Q Consensus       205 ls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi  284 (334)
                      +++.          .+++....|++.|-.+ ...++|++||+||+|+..+|.    ++-              +.+.   
T Consensus        94 itne----------~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~----V~~--------------e~ge---  141 (207)
T KOG0078|consen   94 ITNE----------KSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQ----VSK--------------ERGE---  141 (207)
T ss_pred             ccch----------HHHHHHHHHHHHHHhh-CCCCCcEEEeecccccccccc----ccH--------------HHHH---
Confidence            9998          7888888877777655 345899999999999987543    111              1111   


Q ss_pred             HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                           .+.  ...++.+++|||+++.||.+.|..+.+.|+++
T Consensus       142 -----~lA--~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k  176 (207)
T KOG0078|consen  142 -----ALA--REYGIKFFETSAKTNFNIEEAFLSLARDILQK  176 (207)
T ss_pred             -----HHH--HHhCCeEEEccccCCCCHHHHHHHHHHHHHhh
Confidence                 111  12468899999999999999999999999854

>cd04158 ARD1 ARD1 subfamily

Probab=99.79  E-value=1.4e-18  Score=150.40  Aligned_cols=135  Identities=19%  Similarity=0.317  Sum_probs=105.9

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....++.+++++.+||++|++.++..|.+++++++++|||+|+++.          +++.++..++..+.+...
T Consensus        28 ~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~----------~s~~~~~~~~~~~~~~~~   97 (169)
T cd04158          28 IPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHR----------DRVSEAHSELAKLLTEKE   97 (169)
T ss_pred             CCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcH----------HHHHHHHHHHHHHhcChh
Confidence            3466766666777889999999999999999999999999999999999997          789999999999987766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ..+.|++|++||+|+..+ +  ....+.++                      ...... ..+.+.+.+|||+++.||+++
T Consensus        98 ~~~~piilv~NK~Dl~~~-~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~~Sa~~g~gv~~~  152 (169)
T cd04158          98 LRDALLLIFANKQDVAGA-L--SVEEMTEL----------------------LSLHKLCCGRSWYIQGCDARSGMGLYEG  152 (169)
T ss_pred             hCCCCEEEEEeCcCcccC-C--CHHHHHHH----------------------hCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence            677899999999998643 3  22222222                      111110 123567889999999999999


Q ss_pred             HHHHHHHHHHH
Q psy3651         316 FNAVKNTILHR  326 (334)
Q Consensus       316 f~~v~~~I~~~  326 (334)
                      |+|+.+.+...
T Consensus       153 f~~l~~~~~~~  163 (169)
T cd04158         153 LDWLSRQLVAA  163 (169)
T ss_pred             HHHHHHHHhhc
Confidence            99998876643

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0094|consensus

Probab=99.78  E-value=6.3e-19  Score=153.09  Aligned_cols=132  Identities=19%  Similarity=0.220  Sum_probs=105.9

Q ss_pred             eeecceeEEE--EEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         157 KATKGITEFT--IVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       157 ~~T~Gi~~~~--~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      .+|+|++...  +.+  +.+++++|||+||+++|.+.+.|++++.++|.|+|+++.          ++|+..-+|.+.+.
T Consensus        52 qATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~----------~Sfe~t~kWi~dv~  121 (221)
T KOG0094|consen   52 QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR----------NSFENTSKWIEDVR  121 (221)
T ss_pred             cceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc----------chHHHHHHHHHHHH
Confidence            4577888443  333  348899999999999999999999999999999999998          99999999999999


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      +.+...++-|+||+||.||..++-    ....+                        +...++..+..+.+|||+.|.||
T Consensus       122 ~e~gs~~viI~LVGnKtDL~dkrq----vs~eE------------------------g~~kAkel~a~f~etsak~g~NV  173 (221)
T KOG0094|consen  122 RERGSDDVIIFLVGNKTDLSDKRQ----VSIEE------------------------GERKAKELNAEFIETSAKAGENV  173 (221)
T ss_pred             hccCCCceEEEEEcccccccchhh----hhHHH------------------------HHHHHHHhCcEEEEecccCCCCH
Confidence            988777788999999999987632    11211                        01112234567899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILHR  326 (334)
Q Consensus       313 ~~vf~~v~~~I~~~  326 (334)
                      +.+|..|...+...
T Consensus       174 k~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  174 KQLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHHHhccCc
Confidence            99999988776643

>cd01875 RhoG RhoG subfamily

Probab=99.78  E-value=2.1e-18  Score=152.82  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=104.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+.....   +     .+..+.+.+++|||+||+.++..|..||++++++|+|+|+++.          
T Consensus        26 ~~f~~~~~~t~~~~~~~~---~-----~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~----------   87 (191)
T cd01875          26 NAFPKEYIPTVFDNYSAQ---T-----AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASP----------   87 (191)
T ss_pred             CCCCcCCCCceEeeeEEE---E-----EECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCH----------
Confidence            677788889876542211   1     1222347789999999999999999999999999999999998          


Q ss_pred             ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++++... |...+...  ..++|++|++||.||..++-  ....+.+.    .-.....+.+.++.++         .+
T Consensus        88 ~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~--~~~~~~~~----~~~~v~~~~~~~~a~~---------~~  150 (191)
T cd01875          88 SSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDAD--TLKKLKEQ----GQAPITPQQGGALAKQ---------IH  150 (191)
T ss_pred             HHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChh--hHHHHhhc----cCCCCCHHHHHHHHHH---------cC
Confidence            67777654 44445432  35799999999999965421  11111110    0011223333322211         12


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      .+.+++|||+++.||+++|.++.+.++..+
T Consensus       151 ~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         151 AVKYLECSALNQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence            357899999999999999999999887653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04121 Rab40 Rab40 subfamily

Probab=99.78  E-value=2.9e-18  Score=152.11  Aligned_cols=116  Identities=14%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++||+.++..|..||++++++|+|+|+++.          .++.+...|++++...  .+++|+||++||.|
T Consensus        54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~----------~Sf~~~~~w~~~i~~~--~~~~piilVGNK~D  121 (189)
T cd04121          54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNR----------WSFDGIDRWIKEIDEH--APGVPKILVGNRLH  121 (189)
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECcc
Confidence            37899999999999999999999999999999999998          8888888888888554  36899999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |...+.      +            ..+.+..+.+          ..++.+++|||+++.||+++|+++.+.++.+
T Consensus       122 L~~~~~------v------------~~~~~~~~a~----------~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~  169 (189)
T cd04121         122 LAFKRQ------V------------ATEQAQAYAE----------RNGMTFFEVSPLCNFNITESFTELARIVLMR  169 (189)
T ss_pred             chhccC------C------------CHHHHHHHHH----------HcCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            965421      1            1122322221          2346799999999999999999999988754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04133 Rop_like Rop subfamily

Probab=99.78  E-value=1.1e-18  Score=152.97  Aligned_cols=149  Identities=17%  Similarity=0.155  Sum_probs=104.6

Q ss_pred             CCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651         138 NSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR  217 (334)
Q Consensus       138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~  217 (334)
                      .+.|.++|.||..+.....        ..+.-..+++++||++||+.+++++..||++++++|+|+|+++.         
T Consensus        23 ~~~f~~~~~~Ti~~~~~~~--------~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~---------   85 (176)
T cd04133          23 SNKFPTDYIPTVFDNFSAN--------VSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISR---------   85 (176)
T ss_pred             cCCCCCCCCCcceeeeEEE--------EEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCH---------
Confidence            3677788999987654221        11122347899999999999999999999999999999999998         


Q ss_pred             cccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         218 TNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       218 ~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                       .+++... .|+..+.+..  .++|++|++||+||..++.  .  +..+    ........+.+..+.+          .
T Consensus        86 -~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~--~--~~~~----~~~~~v~~~~~~~~a~----------~  144 (176)
T cd04133          86 -ASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQ--Y--LADH----PGASPITTAQGEELRK----------Q  144 (176)
T ss_pred             -HHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChh--h--hhhc----cCCCCCCHHHHHHHHH----------H
Confidence             7777774 5777765543  5799999999999966431  0  0000    0001122333432222          1


Q ss_pred             CCe-EEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         297 KPL-FHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       297 ~~i-~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      .++ .+++|||+++.||+++|+.+.+.++
T Consensus       145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~~  173 (176)
T cd04133         145 IGAAAYIECSSKTQQNVKAVFDAAIKVVL  173 (176)
T ss_pred             cCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence            233 5889999999999999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00099 rab6; Provisional

Probab=99.78  E-value=3.4e-18  Score=149.94  Aligned_cols=138  Identities=17%  Similarity=0.193  Sum_probs=102.6

Q ss_pred             CCCCCCCCCCCcccccceeeeecceeEE--EEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhh
Q psy3651         138 NSPLFQDYIPSNKDILHARKATKGITEF--TIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV  213 (334)
Q Consensus       138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~--~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~  213 (334)
                      .+.|.+.|.||..           ++..  .+.+  +.+++.||||+||+.++..|..||++++++|+|+|+++.     
T Consensus         2 ~~~F~~~~~~Tig-----------~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~-----   65 (176)
T PTZ00099          2 YDTFDNNYQSTIG-----------IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNR-----   65 (176)
T ss_pred             CCCcCCCCCCccc-----------eEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCH-----
Confidence            3567788888764           2221  1222  347899999999999999999999999999999999997     


Q ss_pred             cccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc
Q psy3651         214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR  293 (334)
Q Consensus       214 ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~  293 (334)
                           .++.+...|+..+.... ..++|++|++||+||...+.    ..              .+.+..+..        
T Consensus        66 -----~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~----v~--------------~~e~~~~~~--------  113 (176)
T PTZ00099         66 -----QSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRK----VT--------------YEEGMQKAQ--------  113 (176)
T ss_pred             -----HHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccC----CC--------------HHHHHHHHH--------
Confidence                 77888888888887653 35789999999999865321    11              111111111        


Q ss_pred             CCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         294 DEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       294 ~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                        ..++.+++|||+++.||.++|+++.+.+.+
T Consensus       114 --~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~  143 (176)
T PTZ00099        114 --EYNTMFHETSAKAGHNIKVLFKKIAAKLPN  143 (176)
T ss_pred             --HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence              123567899999999999999999988754

>KOG0076|consensus

Probab=99.78  E-value=4e-19  Score=151.54  Aligned_cols=184  Identities=18%  Similarity=0.269  Sum_probs=142.6

Q ss_pred             HHHHhccCHHHHHHHHhccccccCcccc--hhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcce
Q psy3651          97 ELKSLWDDVAIRQAFERRSEYQLGDSIQ--YFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPF  174 (334)
Q Consensus        97 ~i~~lW~d~~iq~~~~~~~~~~l~d~~~--yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~  174 (334)
                      .+..||+--.-++.|.--  +-=+|+|+  -|++..+-...       ..|.--.   .....||+|.+..++.+.+..+
T Consensus         4 l~~gl~~~~~~Ke~y~vl--IlgldnAGKttfLe~~Kt~~~-------~~~~~l~---~~ki~~tvgLnig~i~v~~~~l   71 (197)
T KOG0076|consen    4 LMSGLYKYMFKKEDYSVL--ILGLDNAGKTTFLEALKTDFS-------KAYGGLN---PSKITPTVGLNIGTIEVCNAPL   71 (197)
T ss_pred             HHHHHHHHHhhhhhhhhe--eeccccCCchhHHHHHHHHHH-------hhhcCCC---HHHeecccceeecceeecccee
Confidence            456677643323322210  11167777  68888877776       4454322   1235789999999999999999


Q ss_pred             eeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         175 LFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       175 ~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      .+||.|||++-|++|..||..+++|||++|.++.          .|++++...|+.++.+....++|+++.+||+|+..+
T Consensus        72 ~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~----------eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~  141 (197)
T KOG0076|consen   72 SFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDR----------ERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA  141 (197)
T ss_pred             EEEEcCChHHHHHHHHHHHHHhceeEEeecCCCH----------HHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence            9999999999999999999999999999999998          899999999999999999999999999999998775


Q ss_pred             hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         255 KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       255 ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                       .  ...++..+|                     ......+.+...+..+||.+|+||++...|+...+-++
T Consensus       142 -~--~~~El~~~~---------------------~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  142 -M--EAAELDGVF---------------------GLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             -h--hHHHHHHHh---------------------hhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence             2  344454443                     11112234667788999999999999999999988765

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.77  E-value=2.5e-18  Score=148.84  Aligned_cols=133  Identities=17%  Similarity=0.271  Sum_probs=103.4

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.....+..++.++++||++|+..++..|.+||++++++|||+|+++.          .++.++..++..+.+.+.
T Consensus        28 ~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~----------~s~~~~~~~l~~l~~~~~   97 (167)
T cd04161          28 APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDD----------DRVQEVKEILRELLQHPR   97 (167)
T ss_pred             cCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCch----------hHHHHHHHHHHHHHcCcc
Confidence            3456666667777889999999999999999999999999999999999997          789999999999988766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC------c
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT------E  310 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~------~  310 (334)
                      ..+.|++||+||+|+...+   ....+.+.+-   .                ..+.+.....+++..|||++|      .
T Consensus        98 ~~~~piliv~NK~Dl~~~~---~~~~i~~~~~---l----------------~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          98 VSGKPILVLANKQDKKNAL---LGADVIEYLS---L----------------EKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             ccCCcEEEEEeCCCCcCCC---CHHHHHHhcC---c----------------ccccCCCCceEEEEEeEceeCCCCcccc
Confidence            6789999999999986643   2223333210   0                011111124577888999998      8


Q ss_pred             hHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKN  321 (334)
Q Consensus       311 nI~~vf~~v~~  321 (334)
                      |+.+.|+|+..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999964

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.76  E-value=4e-18  Score=152.57  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=91.1

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +.++++|||++||+.++..|..||++++++|+|+|+++.          .++.....|...+....  .++|++||+||+
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~----------~S~~~i~~w~~~i~~~~--~~~piilvgNK~  109 (200)
T smart00176       42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR----------VTYKNVPNWHRDLVRVC--ENIPIVLCGNKV  109 (200)
T ss_pred             EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHhC--CCCCEEEEEECc
Confidence            458899999999999999999999999999999999997          67777777777776542  579999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..+.+  ..                 +.. .+     .     ....+.+++|||+++.||.++|.++.+.+++.
T Consensus       110 Dl~~~~v--~~-----------------~~~-~~-----~-----~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      110 DVKDRKV--KA-----------------KSI-TF-----H-----RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             ccccccC--CH-----------------HHH-HH-----H-----HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            9854322  10                 010 11     0     12457789999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.76  E-value=1.3e-17  Score=145.17  Aligned_cols=140  Identities=14%  Similarity=0.128  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||..+....          .+.+  ..+.+++||++|+..++..|..+|.+++++|+|+|+++.        
T Consensus        25 ~~f~~~~~~t~~~~~~~----------~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~--------   86 (172)
T cd04141          25 HSFPDYHDPTIEDAYKQ----------QARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDR--------   86 (172)
T ss_pred             CCCCCCcCCcccceEEE----------EEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCch--------
Confidence            56667788876543221          1222  236789999999999999999999999999999999997        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .++.....|+..+.......++|++|++||+|+..++.      +.            .+.+..+.          +.
T Consensus        87 --~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~------v~------------~~~~~~~a----------~~  136 (172)
T cd04141          87 --HSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ------VT------------TEEGRNLA----------RE  136 (172)
T ss_pred             --hHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc------cC------------HHHHHHHH----------HH
Confidence              67777766655554433345789999999999865421      11            11121111          12


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      .++.+++|||+++.||+++|+++.+.+.+.
T Consensus       137 ~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  166 (172)
T cd04141         137 FNCPFFETSAALRHYIDDAFHGLVREIRRK  166 (172)
T ss_pred             hCCEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            346789999999999999999999988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04157 Arl6 Arl6 subfamily

Probab=99.75  E-value=7.2e-18  Score=143.53  Aligned_cols=130  Identities=22%  Similarity=0.340  Sum_probs=99.3

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....+..++.++++||++|++.++..|..|+++++++|||+|+++.          .++..+..+++.+.+.+.
T Consensus        30 ~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~~~~~~~   99 (162)
T cd04157          30 VPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR----------LRLVVVKDELELLLNHPD   99 (162)
T ss_pred             cCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcH----------HHHHHHHHHHHHHHcCcc
Confidence            4566766666667788999999999999999999999999999999999997          677777788888877654


Q ss_pred             C--CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         237 F--RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       237 ~--~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      +  .+.|++|++||+|+..+.   ....+.+.                      .++.......+.++.|||+++.||++
T Consensus       100 ~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~----------------------l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157         100 IKHRRVPILFFANKMDLPDAL---TAVKITQL----------------------LGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             cccCCCCEEEEEeCccccCCC---CHHHHHHH----------------------hCCccccCceEEEEEeeCCCCCchHH
Confidence            4  478999999999986532   11112211                      11111122456788999999999999


Q ss_pred             HHHHHHH
Q psy3651         315 VFNAVKN  321 (334)
Q Consensus       315 vf~~v~~  321 (334)
                      +|+|+.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0093|consensus

Probab=99.75  E-value=1.2e-17  Score=138.95  Aligned_cols=149  Identities=19%  Similarity=0.176  Sum_probs=110.1

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe----eCcceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI----SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS  205 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~----~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl  205 (334)
                      +-|.+.       ..|.|       +...|+||+...-++    +.+++++|||+||++.|.....||+++.++|+++|+
T Consensus        38 l~ry~d-------dSFt~-------afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDi  103 (193)
T KOG0093|consen   38 LFRYAD-------DSFTS-------AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI  103 (193)
T ss_pred             hHHhhc-------ccccc-------ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEec
Confidence            446666       67777       567899988443332    348999999999999999999999999999999999


Q ss_pred             CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL  285 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~  285 (334)
                      ++-           ....|++-|-..+..-.-.++|+||++||||+-.|++  -.                .+.+..++.
T Consensus       104 tNe-----------eSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv--is----------------~e~g~~l~~  154 (193)
T KOG0093|consen  104 TNE-----------ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV--IS----------------HERGRQLAD  154 (193)
T ss_pred             CCH-----------HHHHHHHHHHHHheeeeccCceEEEEecccCCcccee--ee----------------HHHHHHHHH
Confidence            995           2333444444444443447899999999999988875  11                122222222


Q ss_pred             HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhc
Q psy3651         286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDL  331 (334)
Q Consensus       286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~  331 (334)
                      +          .++.+++|||+.+.||+.+|+.+.+.|-++...++
T Consensus       155 ~----------LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kmsesl  190 (193)
T KOG0093|consen  155 Q----------LGFEFFETSAKENINVKQVFERLVDIICDKMSESL  190 (193)
T ss_pred             H----------hChHHhhhcccccccHHHHHHHHHHHHHHHhhhhh
Confidence            2          35678999999999999999999999987755443

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.75  E-value=1.7e-17  Score=146.22  Aligned_cols=150  Identities=14%  Similarity=0.131  Sum_probs=101.4

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.++|.||..+...   .++     .+.-..+++++|||+||+.++..|..||++++++|+|+|+++.          
T Consensus        28 ~~f~~~~~pT~~~~~~---~~~-----~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~----------   89 (182)
T cd04172          28 DCFPENYVPTVFENYT---ASF-----EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------   89 (182)
T ss_pred             CCCCCccCCceeeeeE---EEE-----EECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCH----------
Confidence            6677889998765321   111     1222347899999999999999999999999999999999997          


Q ss_pred             ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++.+.+ .|...+...  .+++|++|++||+||....-  ....+..    -...+-+.+++.++.++          .
T Consensus        90 ~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~--~~~~~~~----~~~~~v~~~~~~~~a~~----------~  151 (182)
T cd04172          90 ETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLT--TLVELSN----HRQTPVSYDQGANMAKQ----------I  151 (182)
T ss_pred             HHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChh--hHHHHHh----cCCCCCCHHHHHHHHHH----------c
Confidence            6777764 555555443  35789999999999854210  0000000    00011233444333221          2


Q ss_pred             C-eEEEEEeeecCch-HHHHHHHHHHHHH
Q psy3651         298 P-LFHHFTTAVDTEN-IKIVFNAVKNTIL  324 (334)
Q Consensus       298 ~-i~~~~tsA~d~~n-I~~vf~~v~~~I~  324 (334)
                      + +.+++|||+++.| |+++|..+...++
T Consensus       152 ~~~~~~E~SAk~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         152 GAATYIECSALQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence            3 4789999999998 9999999888654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0087|consensus

Probab=99.75  E-value=6.5e-18  Score=148.52  Aligned_cols=149  Identities=19%  Similarity=0.248  Sum_probs=115.7

Q ss_pred             hhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEE--Eee--CcceeeeecCCcccccccccccccCCCeEEEEE
Q psy3651         128 DNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTI--VIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLV  203 (334)
Q Consensus       128 ~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~--~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~  203 (334)
                      +.+.|+..       .+|.|-       ..+|+|+...+.  .++  -++.+||||+||+++|.....||+++.+++.|+
T Consensus        29 nLlsRftr-------nEF~~~-------SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVY   94 (222)
T KOG0087|consen   29 NLLSRFTR-------NEFSLE-------SKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVY   94 (222)
T ss_pred             HHHHHhcc-------cccCcc-------cccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEE
Confidence            56788888       777773       367899885543  333  488999999999999999999999999999999


Q ss_pred             eCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHH
Q psy3651         204 SSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF  283 (334)
Q Consensus       204 dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~f  283 (334)
                      |++..          ..++....|++++..+ ..++++|+|++||+||-..+    .++-.              +++.|
T Consensus        95 DITr~----------~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lr----aV~te--------------~~k~~  145 (222)
T KOG0087|consen   95 DITRR----------QTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLR----AVPTE--------------DGKAF  145 (222)
T ss_pred             echhH----------HHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhcc----ccchh--------------hhHhH
Confidence            99997          6777777788887765 34789999999999996632    22222              22211


Q ss_pred             HHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhh
Q psy3651         284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR  329 (334)
Q Consensus       284 i~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~  329 (334)
                      -          ....+++++|||.+..||+.+|..+...|.+...+
T Consensus       146 A----------e~~~l~f~EtSAl~~tNVe~aF~~~l~~I~~~vs~  181 (222)
T KOG0087|consen  146 A----------EKEGLFFLETSALDATNVEKAFERVLTEIYKIVSK  181 (222)
T ss_pred             H----------HhcCceEEEecccccccHHHHHHHHHHHHHHHHHH
Confidence            1          12457899999999999999999999999876543

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.75  E-value=2.3e-17  Score=144.07  Aligned_cols=147  Identities=15%  Similarity=0.191  Sum_probs=100.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||..+....          .+.++  .+++++||++||+.++..|..+|++++++|+|+|+++.        
T Consensus        24 ~~f~~~~~pt~~~~~~~----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~--------   85 (175)
T cd01874          24 NKFPSEYVPTVFDNYAV----------TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP--------   85 (175)
T ss_pred             CCCCCCCCCceeeeeEE----------EEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCH--------
Confidence            56767888887543221          12233  36788999999999999999999999999999999997        


Q ss_pred             ccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651         217 RTNRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE  295 (334)
Q Consensus       217 ~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~  295 (334)
                        .++.+... |...+...  ..++|++|++||+|+..+..  ....+    ..+....-..+.+.++.++         
T Consensus        86 --~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~--~~~~l----~~~~~~~v~~~~~~~~a~~---------  146 (175)
T cd01874          86 --SSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPS--TIEKL----AKNKQKPITPETGEKLARD---------  146 (175)
T ss_pred             --HHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChh--hHHHh----hhccCCCcCHHHHHHHHHH---------
Confidence              66766654 54554432  25789999999999855321  11111    1111122333444333221         


Q ss_pred             CCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         296 KKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      .+.+.+++|||+++.||+++|+.+.+.
T Consensus       147 ~~~~~~~e~SA~tg~~v~~~f~~~~~~  173 (175)
T cd01874         147 LKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             hCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence            134678999999999999999988764

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.75  E-value=8e-18  Score=153.87  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=104.7

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+....   ++     .+.-..+.+.||||+||+.++..+..||++++++|+|+|+++.          
T Consensus        36 ~~F~~~y~pTi~~~~~~---~i-----~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~----------   97 (232)
T cd04174          36 DCYPETYVPTVFENYTA---GL-----ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP----------   97 (232)
T ss_pred             CCCCCCcCCceeeeeEE---EE-----EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCCh----------
Confidence            66778899987543211   11     1222347899999999999999999999999999999999998          


Q ss_pred             ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++...+ .|+..+...  ..+.|++||+||+||..+.-     .+... ++=....-..+++.+|.++          .
T Consensus        98 ~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~-----~~~~l-~~~~~~~Vs~~e~~~~a~~----------~  159 (232)
T cd04174          98 ETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLS-----TLMEL-SNQKQAPISYEQGCALAKQ----------L  159 (232)
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccc-----hhhhh-ccccCCcCCHHHHHHHHHH----------c
Confidence            7777654 555555443  25789999999999854210     01000 0000011233444433322          2


Q ss_pred             Ce-EEEEEeeecCc-hHHHHHHHHHHHHHHHhhh
Q psy3651         298 PL-FHHFTTAVDTE-NIKIVFNAVKNTILHRNLR  329 (334)
Q Consensus       298 ~i-~~~~tsA~d~~-nI~~vf~~v~~~I~~~~l~  329 (334)
                      ++ .+++|||++++ ||+++|..+...++++.++
T Consensus       160 ~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~  193 (232)
T cd04174         160 GAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP  193 (232)
T ss_pred             CCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence            34 57899999997 8999999999998876543

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.74  E-value=1.3e-17  Score=144.01  Aligned_cols=127  Identities=19%  Similarity=0.386  Sum_probs=96.3

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|.....+..+++++.+||++||..+++.|.+|+++++++|||+|+++.          .++.++..++..+....  
T Consensus        30 pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~----------~s~~~~~~~l~~~~~~~--   97 (164)
T cd04162          30 PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS----------ERLPLARQELHQLLQHP--   97 (164)
T ss_pred             ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCC--
Confidence            445555555666788999999999999999999999999999999999997          67888888888887643  


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec------Cch
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD------TEN  311 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d------~~n  311 (334)
                      .++|++|++||+|+..++   ....+...+    +       +        ..+  ..++++++++|||++      ++|
T Consensus        98 ~~~piilv~NK~Dl~~~~---~~~~i~~~~----~-------~--------~~~--~~~~~~~~~~~Sa~~~~s~~~~~~  153 (164)
T cd04162          98 PDLPLVVLANKQDLPAAR---SVQEIHKEL----E-------L--------EPI--ARGRRWILQGTSLDDDGSPSRMEA  153 (164)
T ss_pred             CCCcEEEEEeCcCCcCCC---CHHHHHHHh----C-------C--------hhh--cCCCceEEEEeeecCCCChhHHHH
Confidence            689999999999986653   222222210    0       0        111  123568888999998      999


Q ss_pred             HHHHHHHHH
Q psy3651         312 IKIVFNAVK  320 (334)
Q Consensus       312 I~~vf~~v~  320 (334)
                      |+++|+.+.
T Consensus       154 v~~~~~~~~  162 (164)
T cd04162         154 VKDLLSQLI  162 (164)
T ss_pred             HHHHHHHHh
Confidence            999998765

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0098|consensus

Probab=99.74  E-value=9.6e-18  Score=144.73  Aligned_cols=145  Identities=19%  Similarity=0.234  Sum_probs=110.9

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeeccee----EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGIT----EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS  205 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~----~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl  205 (334)
                      +.|++.       ..|+|-.       ..|+|+.    ..+++-+.+++++|||+||+++|+....||+++.++|+|+|+
T Consensus        23 llrf~~-------krF~~~h-------d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydi   88 (216)
T KOG0098|consen   23 LLRFTD-------KRFQPVH-------DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDI   88 (216)
T ss_pred             HHHHhc-------cCccccc-------cceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEc
Confidence            567777       7777743       3688877    334444569999999999999999999999999999999999


Q ss_pred             CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL  285 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~  285 (334)
                      +..          .++..--.|++.+.++. .+|..|+|++||+||...+-      +            +.++...|-+
T Consensus        89 t~r----------~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~------V------------s~EEGeaFA~  139 (216)
T KOG0098|consen   89 TRR----------ESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARRE------V------------SKEEGEAFAR  139 (216)
T ss_pred             cch----------hhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhcccc------c------------cHHHHHHHHH
Confidence            998          55555556666666543 47899999999999976532      1            1223322332


Q ss_pred             HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                                ++.+-+.+|||++++||+++|......|.++.
T Consensus       140 ----------ehgLifmETSakt~~~VEEaF~nta~~Iy~~~  171 (216)
T KOG0098|consen  140 ----------EHGLIFMETSAKTAENVEEAFINTAKEIYRKI  171 (216)
T ss_pred             ----------HcCceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence                      35677789999999999999999999998764

>cd04175 Rap1 Rap1 subgroup

Probab=99.74  E-value=3.7e-17  Score=140.06  Aligned_cols=137  Identities=15%  Similarity=0.164  Sum_probs=102.4

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||..+...          ..+.++  .+.+++||++||+.++.+|..++++++++|+|+|+++.        
T Consensus        24 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~--------   85 (164)
T cd04175          24 GIFVEKYDPTIEDSYR----------KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQ--------   85 (164)
T ss_pred             CCCCcccCCcchheEE----------EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCH--------
Confidence            4566778887755321          123333  46788999999999999999999999999999999987        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .++.+..+++..+.+.....+.|++|++||+|+..++.  .                ..+.+..+.+          .
T Consensus        86 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~----------------~~~~~~~~~~----------~  135 (164)
T cd04175          86 --STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--V----------------GKEQGQNLAR----------Q  135 (164)
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE--E----------------cHHHHHHHHH----------H
Confidence              67888888888888765567899999999999865432  0                0111111111          1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ..+.+++|||+++.||+++|.++.+.+
T Consensus       136 ~~~~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         136 WGCAFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            235789999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0079|consensus

Probab=99.73  E-value=1.2e-17  Score=139.07  Aligned_cols=135  Identities=20%  Similarity=0.294  Sum_probs=110.7

Q ss_pred             eeeeecceeE--EEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         155 ARKATKGITE--FTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       155 ~~~~T~Gi~~--~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      ++..|+|++.  .++++.  .++++|||++||+++|.+...||++.+++|.|+|+++-          .++.....|+++
T Consensus        36 sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~----------ESF~Nv~rWLee  105 (198)
T KOG0079|consen   36 SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG----------ESFNNVKRWLEE  105 (198)
T ss_pred             ceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcch----------hhhHhHHHHHHH
Confidence            4556788773  344444  48999999999999999999999999999999999997          899999999999


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +-++-  ...|-+||+||.|+.+.|+  -                +.++|..|...          .++.+|+|||++.+
T Consensus       106 i~~nc--dsv~~vLVGNK~d~~~Rrv--V----------------~t~dAr~~A~~----------mgie~FETSaKe~~  155 (198)
T KOG0079|consen  106 IRNNC--DSVPKVLVGNKNDDPERRV--V----------------DTEDARAFALQ----------MGIELFETSAKENE  155 (198)
T ss_pred             HHhcC--ccccceecccCCCCcccee--e----------------ehHHHHHHHHh----------cCchheehhhhhcc
Confidence            98763  4789999999999998876  1                23344444333          46889999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhh
Q psy3651         311 NIKIVFNAVKNTILHRNLR  329 (334)
Q Consensus       311 nI~~vf~~v~~~I~~~~l~  329 (334)
                      |++.+|.-|.+.+++..+.
T Consensus       156 NvE~mF~cit~qvl~~k~r  174 (198)
T KOG0079|consen  156 NVEAMFHCITKQVLQAKLR  174 (198)
T ss_pred             cchHHHHHHHHHHHHHHHh
Confidence            9999999999999887653

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.73  E-value=2.2e-17  Score=143.78  Aligned_cols=130  Identities=21%  Similarity=0.348  Sum_probs=102.1

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.+...+.+++..+.+||++|+..++..|..+|++++++|||+|+++.          +++.++..++.+++++..
T Consensus        44 ~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~----------~~~~~~~~~l~~~~~~~~  113 (174)
T cd04153          44 SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDR----------ERLPLTKEELYKMLAHED  113 (174)
T ss_pred             CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchh
Confidence            3566776667777889999999999999999999999999999999999987          678888888888888766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..++|++|++||+|+... +  ....+.+.                      ..+.....+.+.++++||+++.||+++|
T Consensus       114 ~~~~p~viv~NK~Dl~~~-~--~~~~i~~~----------------------l~~~~~~~~~~~~~~~SA~~g~gi~e~~  168 (174)
T cd04153         114 LRKAVLLVLANKQDLKGA-M--TPAEISES----------------------LGLTSIRDHTWHIQGCCALTGEGLPEGL  168 (174)
T ss_pred             hcCCCEEEEEECCCCCCC-C--CHHHHHHH----------------------hCcccccCCceEEEecccCCCCCHHHHH
Confidence            778999999999998652 2  11112111                      1111122355778999999999999999


Q ss_pred             HHHHH
Q psy3651         317 NAVKN  321 (334)
Q Consensus       317 ~~v~~  321 (334)
                      +++.+
T Consensus       169 ~~l~~  173 (174)
T cd04153         169 DWIAS  173 (174)
T ss_pred             HHHhc
Confidence            99864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.73  E-value=4e-17  Score=143.43  Aligned_cols=133  Identities=26%  Similarity=0.369  Sum_probs=99.0

Q ss_pred             eecceeEEEEEe-----eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         158 ATKGITEFTIVI-----SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       158 ~T~Gi~~~~~~~-----~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ||+|+....+.+     .++.+.+|||+|++.++..|..|+++++++|||+|+++.          .++.++..++..+.
T Consensus        33 ~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~~~~~~~~~~~~i~  102 (183)
T cd04152          33 PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV----------ERMEEAKTELHKIT  102 (183)
T ss_pred             CccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHH
Confidence            555655444433     357899999999999999999999999999999999997          67777777777777


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCch
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~n  311 (334)
                      ......+.|++|++||+|+... .  ....+..                      +.++... ....+++++|||++++|
T Consensus       103 ~~~~~~~~p~iiv~NK~D~~~~-~--~~~~~~~----------------------~~~~~~~~~~~~~~~~~~SA~~~~g  157 (183)
T cd04152         103 RFSENQGVPVLVLANKQDLPNA-L--SVSEVEK----------------------LLALHELSASTPWHVQPACAIIGEG  157 (183)
T ss_pred             hhhhcCCCcEEEEEECcCcccc-C--CHHHHHH----------------------HhCccccCCCCceEEEEeecccCCC
Confidence            6544567899999999998643 2  1111211                      1222111 12346788999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTILH  325 (334)
Q Consensus       312 I~~vf~~v~~~I~~  325 (334)
                      |+++|+++.+.+++
T Consensus       158 i~~l~~~l~~~l~~  171 (183)
T cd04152         158 LQEGLEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=99.73  E-value=1.6e-17  Score=144.16  Aligned_cols=130  Identities=21%  Similarity=0.308  Sum_probs=101.5

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....+.+++..+.+||++||+.++..|..+|++++++|||+|+++.          .++.+...++..+++...
T Consensus        43 ~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~  112 (173)
T cd04154          43 SPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDR----------LRLDDCKRELKELLQEER  112 (173)
T ss_pred             CCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhChh
Confidence            3566766667777788999999999999999999999999999999999997          678888888888887655


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+.+..   ....+.+.                      ..+.....+.+.+++|||++|+||.++|
T Consensus       113 ~~~~p~iiv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  167 (173)
T cd04154         113 LAGATLLILANKQDLPGAL---SEEEIREA----------------------LELDKISSHHWRIQPCSAVTGEGLLQGI  167 (173)
T ss_pred             hcCCCEEEEEECcccccCC---CHHHHHHH----------------------hCccccCCCceEEEeccCCCCcCHHHHH
Confidence            6789999999999986531   11112221                      1111112356789999999999999999


Q ss_pred             HHHHH
Q psy3651         317 NAVKN  321 (334)
Q Consensus       317 ~~v~~  321 (334)
                      +++.+
T Consensus       168 ~~l~~  172 (173)
T cd04154         168 DWLVD  172 (173)
T ss_pred             HHHhc
Confidence            99864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04136 Rap_like Rap-like subfamily

Probab=99.73  E-value=2.9e-17  Score=139.99  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=100.4

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||..|....          .+.++  .+.+++||++||+.++..|..|+++++++|+|+|+++.        
T Consensus        24 ~~~~~~~~~t~~~~~~~----------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~--------   85 (163)
T cd04136          24 GIFVEKYDPTIEDSYRK----------QIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQ--------   85 (163)
T ss_pred             CCCCcccCCchhhhEEE----------EEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCH--------
Confidence            55667788877544221          22222  36788999999999999999999999999999999997        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .++.+...+++.+.+.....+.|++|++||+|+..++.    ...              +.+..+.        +  .
T Consensus        86 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----~~~--------------~~~~~~~--------~--~  135 (163)
T cd04136          86 --SSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERV----VSR--------------EEGQALA--------R--Q  135 (163)
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce----ecH--------------HHHHHHH--------H--H
Confidence              67777888888877655456789999999999865321    111              1111111        1  1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ..+.+++|||+++.||.++|+++.+.+
T Consensus       136 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         136 WGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             cCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            226789999999999999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04151 Arl1 Arl1 subfamily

Probab=99.72  E-value=2.1e-17  Score=141.05  Aligned_cols=129  Identities=22%  Similarity=0.371  Sum_probs=97.9

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|.+...+++.+.++++||++|+..++..|..|+++++++|+|+|+++.          .++.....++..+++....
T Consensus        29 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~   98 (158)
T cd04151          29 PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDR----------DRLGTAKEELHAMLEEEEL   98 (158)
T ss_pred             CccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchhh
Confidence            566766666777889999999999999999999999999999999999997          5666666777777665556


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||+|+....   ....+...                      ..........+.+++|||+++.||+++|+
T Consensus        99 ~~~piiiv~nK~Dl~~~~---~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          99 KGAVLLVFANKQDMPGAL---SEAEISEK----------------------LGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             cCCcEEEEEeCCCCCCCC---CHHHHHHH----------------------hCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            689999999999986431   11111111                      11111122446789999999999999999


Q ss_pred             HHHH
Q psy3651         318 AVKN  321 (334)
Q Consensus       318 ~v~~  321 (334)
                      ++.+
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.72  E-value=7.5e-17  Score=140.73  Aligned_cols=149  Identities=17%  Similarity=0.165  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+.....        ..+..+.+.+.+||++||+.++..|..++.+++++|+|+|+++.          
T Consensus        24 ~~f~~~~~~t~~~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------   85 (174)
T cd01871          24 NAFPGEYIPTVFDNYSAN--------VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP----------   85 (174)
T ss_pred             CCCCCcCCCcceeeeEEE--------EEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCH----------
Confidence            667788999876542211        11222346788999999999999999999999999999999997          


Q ss_pred             ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      +++.+... |+..+...  ..++|++|++||+||...+.  ....+...    ....-..+++.++.++.         +
T Consensus        86 ~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~  148 (174)
T cd01871          86 ASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKEI---------G  148 (174)
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChh--hHHHHhhc----cCCCCCHHHHHHHHHHc---------C
Confidence            67777654 44444433  35799999999999965432  22222211    01112334443232211         2


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      .+.+++|||+++.||+++|+.+.+.
T Consensus       149 ~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         149 AVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             CcEEEEecccccCCHHHHHHHHHHh
Confidence            3578999999999999999988763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.72  E-value=1.2e-16  Score=142.46  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=90.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh---cCCCCCcEEEEEe
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN---VIFRNVSFILFLN  247 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~---~~~~~~piiL~lN  247 (334)
                      .+.+.+||++||+.++..|..+|++++++|+|+|+++.          .++.++..|+..+.+.   +...++|++|++|
T Consensus        49 ~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~----------~s~~~~~~~~~~i~~~~~~~~~~~~piilv~N  118 (201)
T cd04107          49 VVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRP----------STFEAVLKWKADLDSKVTLPNGEPIPCLLLAN  118 (201)
T ss_pred             EEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhcccCCCCCcEEEEEE
Confidence            47789999999999999999999999999999999997          7777777777666432   2236789999999


Q ss_pred             CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+|+..++.    .              ..+.+.++...         .....+++|||+++.||.++|+++.+.+++.
T Consensus       119 K~Dl~~~~~----~--------------~~~~~~~~~~~---------~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         119 KCDLKKRLA----K--------------DGEQMDQFCKE---------NGFIGWFETSAKEGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             CCCcccccc----c--------------CHHHHHHHHHH---------cCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999964221    0              11122212211         1125689999999999999999999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04131 Rnd Rnd subfamily

Probab=99.72  E-value=9.1e-17  Score=140.99  Aligned_cols=150  Identities=15%  Similarity=0.129  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.++|.||..+...   .++     .+.-..+++++|||+||+.++..+..||++++++|+|+|+++.          
T Consensus        24 ~~f~~~~~~t~~~~~~---~~~-----~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~----------   85 (178)
T cd04131          24 DCYPETYVPTVFENYT---ASF-----EIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRP----------   85 (178)
T ss_pred             CcCCCCcCCceEEEEE---EEE-----EECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCCh----------
Confidence            5677889998754321   111     1122347799999999999999999999999999999999997          


Q ss_pred             ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++++.+ .|...+...  .+++|++||+||+||..+.-  ....+..    ....+-..+++.++.++          .
T Consensus        86 ~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~--~~~~~~~----~~~~~v~~~e~~~~a~~----------~  147 (178)
T cd04131          86 ETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLS--TLMELSH----QRQAPVSYEQGCAIAKQ----------L  147 (178)
T ss_pred             hhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChh--HHHHHHh----cCCCCCCHHHHHHHHHH----------h
Confidence            7777754 555555443  25789999999999854210  0001110    01112234444433322          2


Q ss_pred             Ce-EEEEEeeecCch-HHHHHHHHHHHHH
Q psy3651         298 PL-FHHFTTAVDTEN-IKIVFNAVKNTIL  324 (334)
Q Consensus       298 ~i-~~~~tsA~d~~n-I~~vf~~v~~~I~  324 (334)
                      ++ .+++|||++++| |+++|..+....+
T Consensus       148 ~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         148 GAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            33 689999999995 9999999888654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04122 Rab14 Rab14 subfamily

Probab=99.72  E-value=1.2e-16  Score=137.39  Aligned_cols=116  Identities=18%  Similarity=0.187  Sum_probs=89.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+++.+||++||+.++..|..++++++++|+|+|+++.          .+++....|+..+.+.. ..++|++|++||+|
T Consensus        50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~D  118 (166)
T cd04122          50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLT-NPNTVIFLIGNKAD  118 (166)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEECcc
Confidence            46789999999999999999999999999999999997          66777777777665432 35689999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++.      +            +.+.+.++..          ..++.+++|||+++.||.++|.++...+.+
T Consensus       119 l~~~~~------~------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         119 LEAQRD------V------------TYEEAKQFAD----------ENGLLFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             cccccC------c------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            966432      0            1122221211          134678999999999999999999988765

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04126 Rab20 Rab20 subfamily

Probab=99.72  E-value=1.9e-16  Score=143.76  Aligned_cols=158  Identities=15%  Similarity=0.122  Sum_probs=106.9

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|.......++.+.+.+||++||+.++..|..||++++++|+|+|+++.          .++.+...+|..+... ..
T Consensus        30 ~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~----------~Sf~~l~~~~~~l~~~-~~   98 (220)
T cd04126          30 STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV----------QSLEELEDRFLGLTDT-AN   98 (220)
T ss_pred             CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cC
Confidence            455555444455677899999999999999999999999999999999997          6788887888887754 34


Q ss_pred             CCCcEEEEEeCCCcchhhhcc--ccchhhhhCCCCCCCCccHHHHHHHHHHHHHhh---cc--CCCCCeEEEEEeeecCc
Q psy3651         238 RNVSFILFLNKTDLLAEKLRT--SKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAV---KR--DEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~--~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l---~~--~~~~~i~~~~tsA~d~~  310 (334)
                      .++|+|||+||+||.......  ...+ ...-+.........+++..+.++. ...   ..  .+...+.+++|||++|.
T Consensus        99 ~~~piIlVgNK~DL~~~~~~~~~~~~~-~~~~~~~~~r~v~~~e~~~~a~~~-~~~~~~~~~~~~~~~~~~~E~SA~tg~  176 (220)
T cd04126          99 EDCLFAVVGNKLDLTEEGALAGQEKDA-GDRVSPEDQRQVTLEDAKAFYKRI-NKYKMLDEDLSPAAEKMCFETSAKTGY  176 (220)
T ss_pred             CCCcEEEEEECcccccccccccccccc-cccccccccccCCHHHHHHHHHHh-CccccccccccccccceEEEeeCCCCC
Confidence            678999999999996521100  0000 000001111223455665555432 100   00  01123678999999999


Q ss_pred             hHHHHHHHHHHHHHHHhh
Q psy3651         311 NIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       311 nI~~vf~~v~~~I~~~~l  328 (334)
                      ||+++|..+.+.++...+
T Consensus       177 ~V~elf~~i~~~~~~~~~  194 (220)
T cd04126         177 NVDELFEYLFNLVLPLIL  194 (220)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            999999999998876543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04127 Rab27A Rab27a subfamily

Probab=99.72  E-value=1.2e-16  Score=138.98  Aligned_cols=117  Identities=16%  Similarity=0.200  Sum_probs=92.0

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+++||++||+.++..|..++++++++|+|+|+++.          .++.+...|+..+.......+.|++|++||+|+
T Consensus        63 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl  132 (180)
T cd04127          63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNE----------QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADL  132 (180)
T ss_pred             EEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence            6789999999999999999999999999999999987          677777788887766544567899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ..++.  .                ..+.+.++..+          .++.+++|||+++.||+++|+++.+.++++
T Consensus       133 ~~~~~--v----------------~~~~~~~~~~~----------~~~~~~e~Sak~~~~v~~l~~~l~~~~~~~  179 (180)
T cd04127         133 EDQRQ--V----------------SEEQAKALADK----------YGIPYFETSAATGTNVEKAVERLLDLVMKR  179 (180)
T ss_pred             hhcCc--c----------------CHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            65421  0                11122212111          235689999999999999999999988754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.71  E-value=4.4e-17  Score=147.61  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +.+++++||++||+.++..|..||++++++|+|+|+++.          .++.....|+..+...  ..++|++||+||+
T Consensus        60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~----------~s~~~i~~w~~~i~~~--~~~~piilvgNK~  127 (219)
T PLN03071         60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (219)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCH----------HHHHHHHHHHHHHHHh--CCCCcEEEEEEch
Confidence            347899999999999999999999999999999999997          6777777777777653  3679999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+....+  ..                 +.+ .+     ..     .+.+.+++|||+++.||.++|.++.+.+++.
T Consensus       128 Dl~~~~v--~~-----------------~~~-~~-----~~-----~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        128 DVKNRQV--KA-----------------KQV-TF-----HR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             hhhhccC--CH-----------------HHH-HH-----HH-----hcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            9854322  11                 111 11     11     2346789999999999999999999988754

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.71  E-value=6.3e-17  Score=138.72  Aligned_cols=133  Identities=23%  Similarity=0.385  Sum_probs=105.2

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..||+|++...+.+++..+.+||++||+.++..|..++.+++++|||+|.++.          ..+.+...++..+.+..
T Consensus        34 ~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~----------~~~~~~~~~~~~~~~~~  103 (167)
T cd04160          34 ITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDR----------ERFEESKSALEKVLRNE  103 (167)
T ss_pred             cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchH----------HHHHHHHHHHHHHHhCh
Confidence            45678888888888899999999999999999999999999999999999986          67888888999988876


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|++|++||+|+... .  ....+..++.++.                 ..   .....+.++.+||+++.|++++
T Consensus       104 ~~~~~p~ilv~NK~D~~~~-~--~~~~~~~~~~~~~-----------------~~---~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160         104 ALEGVPLLILANKQDLPDA-L--SVEEIKEVFQDKA-----------------EE---IGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             hhcCCCEEEEEEccccccC-C--CHHHHHHHhcccc-----------------cc---ccCCceEEEEeeCCCCcCHHHH
Confidence            6678999999999998653 2  2222333221111                 00   1124578999999999999999


Q ss_pred             HHHHHH
Q psy3651         316 FNAVKN  321 (334)
Q Consensus       316 f~~v~~  321 (334)
                      |+|+.+
T Consensus       161 ~~~l~~  166 (167)
T cd04160         161 IEWLVE  166 (167)
T ss_pred             HHHHhc
Confidence            999865

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04144 Ras2 Ras2 subfamily

Probab=99.71  E-value=1.6e-16  Score=140.26  Aligned_cols=144  Identities=12%  Similarity=0.104  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+..+...        .+....+.+++||++|++.++..|..||++++++|+|+|+++.          
T Consensus        22 ~~f~~~~~~t~~~~~~~~~--------~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------   83 (190)
T cd04144          22 NHFVETYDPTIEDSYRKQV--------VVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSR----------   83 (190)
T ss_pred             CCCCccCCCchHhhEEEEE--------EECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCH----------
Confidence            5666778888765432211        1111335689999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         219 NRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                      +++.....++..+.+..  ...+.|++|++||+|+..++.      +.            .+.+.++..          .
T Consensus        84 ~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~------v~------------~~~~~~~~~----------~  135 (190)
T cd04144          84 STFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE------VS------------TEEGAALAR----------R  135 (190)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc------cC------------HHHHHHHHH----------H
Confidence            56666666666665432  135789999999999865321      10            111111111          1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      .++.++++||+++.||.++|.++.+.+.++..
T Consensus       136 ~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~  167 (190)
T cd04144         136 LGCEFIEASAKTNVNVERAFYTLVRALRQQRQ  167 (190)
T ss_pred             hCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            23568999999999999999999998876544

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.71  E-value=4.3e-17  Score=143.42  Aligned_cols=137  Identities=23%  Similarity=0.326  Sum_probs=103.1

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||.|.....+.+++.++.+||++|+...++.|.+|+.+++++|||+|+++.          .++.++..++..+++....
T Consensus        47 ~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~----------~~~~~~~~~l~~l~~~~~~  116 (184)
T smart00178       47 PTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDK----------ERFAESKRELDALLSDEEL  116 (184)
T ss_pred             CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcH----------HHHHHHHHHHHHHHcChhh
Confidence            345555556677889999999999999999999999999999999999997          7788888888888876666


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||+|+..+ +  ....+.+.+--....               ........+.+.++.|||+.++|+.++++
T Consensus       117 ~~~piliv~NK~Dl~~~-~--~~~~i~~~l~l~~~~---------------~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~  178 (184)
T smart00178      117 ATVPFLILGNKIDAPYA-A--SEDELRYALGLTNTT---------------GSKGKVGVRPLEVFMCSVVRRMGYGEGFK  178 (184)
T ss_pred             cCCCEEEEEeCccccCC-C--CHHHHHHHcCCCccc---------------ccccccCCceeEEEEeecccCCChHHHHH
Confidence            78999999999998643 3  333444432100000               00000112567899999999999999999


Q ss_pred             HHHHH
Q psy3651         318 AVKNT  322 (334)
Q Consensus       318 ~v~~~  322 (334)
                      |+.+.
T Consensus       179 wl~~~  183 (184)
T smart00178      179 WLSQY  183 (184)
T ss_pred             HHHhh
Confidence            99764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04176 Rap2 Rap2 subgroup

Probab=99.70  E-value=5.7e-17  Score=138.62  Aligned_cols=138  Identities=15%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+.....        ..+......+++||++|+++++.+|..|+++++++|+|+|+++.          
T Consensus        24 ~~~~~~~~~t~~~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~----------   85 (163)
T cd04176          24 GTFIEKYDPTIEDFYRKE--------IEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQ----------   85 (163)
T ss_pred             CCCCCCCCCchhheEEEE--------EEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCH----------
Confidence            566677888765432211        11111235688999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++.+...|+..+.+.....+.|++|++||+|+..++.    ..              .+.+..+.        .  ...
T Consensus        86 ~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----~~--------------~~~~~~~~--------~--~~~  137 (163)
T cd04176          86 QTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE----VS--------------SAEGRALA--------E--EWG  137 (163)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc----cC--------------HHHHHHHH--------H--HhC
Confidence            67778878878777655456889999999999854321    00              01111111        0  123


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +.+++|||+++.||.++|.++.+.
T Consensus       138 ~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04176         138 CPFMETSAKSKTMVNELFAEIVRQ  161 (163)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHh
Confidence            568899999999999999998764

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.70  E-value=1.7e-16  Score=144.25  Aligned_cols=154  Identities=14%  Similarity=0.128  Sum_probs=104.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.++|.||..+....   .     ..+.-..+.+.+||++||+.+++.|..+|.+++++|+|+|+++.          
T Consensus        24 ~~f~~~y~pTi~~~~~~---~-----~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~----------   85 (222)
T cd04173          24 DAYPGSYVPTVFENYTA---S-----FEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRP----------   85 (222)
T ss_pred             CCCCCccCCccccceEE---E-----EEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCH----------
Confidence            66778899987654211   1     11122347789999999999999999999999999999999998          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .+++.....|...+.. ...++|++||+||+||....-  ....+.+.    .-.+-..+.+..+.++         ...
T Consensus        86 ~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~--~~~~~~~~----~~~pIs~e~g~~~ak~---------~~~  149 (222)
T cd04173          86 ETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLA--TLRELSKQ----RLIPVTHEQGTVLAKQ---------VGA  149 (222)
T ss_pred             HHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchh--hhhhhhhc----cCCccCHHHHHHHHHH---------cCC
Confidence            7788887666655443 346799999999999865311  11111110    0111223333322211         122


Q ss_pred             eEEEEEeeecCch-HHHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTEN-IKIVFNAVKNTILHR  326 (334)
Q Consensus       299 i~~~~tsA~d~~n-I~~vf~~v~~~I~~~  326 (334)
                      +.+++|||+++.+ |+++|..+....+.+
T Consensus       150 ~~y~E~SAk~~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         150 VSYVECSSRSSERSVRDVFHVATVASLGR  178 (222)
T ss_pred             CEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence            4789999999885 999999999987764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd00879 Sar1 Sar1 subfamily

Probab=99.70  E-value=1.2e-16  Score=140.53  Aligned_cols=141  Identities=24%  Similarity=0.385  Sum_probs=103.4

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||.|.....+.+.+..+.+||++|+..+++.|.+|+.+++++|+|+|+++.          .++.++..++.++++....
T Consensus        49 ~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~----------~s~~~~~~~~~~i~~~~~~  118 (190)
T cd00879          49 PTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADP----------ERFQESKEELDSLLSDEEL  118 (190)
T ss_pred             CccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHcCccc
Confidence            455556667777889999999999999999999999999999999999987          7788888999999876666


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||+|+... +  ....+.+++-.+.-...           +..++.....+.+.++.|||++++||.++|+
T Consensus       119 ~~~pvivv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~  184 (190)
T cd00879         119 ANVPFLILGNKIDLPGA-V--SEEELRQALGLYGTTTG-----------KGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR  184 (190)
T ss_pred             cCCCEEEEEeCCCCCCC-c--CHHHHHHHhCccccccc-----------ccccccccCceeEEEEEeEecCCCChHHHHH
Confidence            78999999999998642 3  33333333211100000           0000111112456789999999999999999


Q ss_pred             HHHHH
Q psy3651         318 AVKNT  322 (334)
Q Consensus       318 ~v~~~  322 (334)
                      |+...
T Consensus       185 ~l~~~  189 (190)
T cd00879         185 WLSQY  189 (190)
T ss_pred             HHHhh
Confidence            99764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.70  E-value=9.9e-17  Score=135.97  Aligned_cols=136  Identities=18%  Similarity=0.168  Sum_probs=98.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|...|.||..+...          ..+.+  ....+.+||++|++.++..|..|+++++++++|+|+++.        
T Consensus        24 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~--------   85 (162)
T cd04138          24 NHFVDEYDPTIEDSYR----------KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSR--------   85 (162)
T ss_pred             CCCcCCcCCcchheEE----------EEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCH--------
Confidence            4566778888765421          11222  235688999999999999999999999999999999987        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        ..+.+...++..+.......+.|++|++||+|+....+  ...                 .+..+..          .
T Consensus        86 --~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~--~~~-----------------~~~~~~~----------~  134 (162)
T cd04138          86 --KSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV--SSR-----------------QGQDLAK----------S  134 (162)
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee--cHH-----------------HHHHHHH----------H
Confidence              56667667777777654456789999999999865322  111                 1111110          1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ..+.+++|||+++.||.++|+++.+.+
T Consensus       135 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         135 YGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            235688999999999999999998654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>KOG0080|consensus

Probab=99.69  E-value=1.5e-16  Score=134.28  Aligned_cols=146  Identities=17%  Similarity=0.183  Sum_probs=106.7

Q ss_pred             hHHHHHhhhCCCCCCCCCCCcccccceeeeecceeE--EEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEe
Q psy3651         129 NWDRISRRVNSPLFQDYIPSNKDILHARKATKGITE--FTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVS  204 (334)
Q Consensus       129 ~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~--~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~d  204 (334)
                      -+-|+..       ..|.|..       ..|+|++.  ..+.++  ..++.||||+||+++|.+.++||+++.+||.|+|
T Consensus        27 LllrFv~-------~~fd~~~-------~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYD   92 (209)
T KOG0080|consen   27 LLLRFVS-------NTFDDLH-------PTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYD   92 (209)
T ss_pred             HHHHHHh-------cccCccC-------CceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEE
Confidence            3556777       6666632       34688874  344444  4789999999999999999999999999999999


Q ss_pred             CCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651         205 SSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL  284 (334)
Q Consensus       205 ls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi  284 (334)
                      ++..|..       -.++.+++..+..+.+   .++-.+||+||+|...++.                  .+-++..+|.
T Consensus        93 VT~Rdtf-------~kLd~W~~Eld~Ystn---~diikmlVgNKiDkes~R~------------------V~reEG~kfA  144 (209)
T KOG0080|consen   93 VTSRDTF-------VKLDIWLKELDLYSTN---PDIIKMLVGNKIDKESERV------------------VDREEGLKFA  144 (209)
T ss_pred             ccchhhH-------HhHHHHHHHHHhhcCC---ccHhHhhhcccccchhccc------------------ccHHHHHHHH
Confidence            9998544       3455555555555544   5678899999999765443                  1112222222


Q ss_pred             HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                                +++++-++++||++.+||+.+|+.+...|++.
T Consensus       145 ----------r~h~~LFiE~SAkt~~~V~~~FeelveKIi~t  176 (209)
T KOG0080|consen  145 ----------RKHRCLFIECSAKTRENVQCCFEELVEKIIET  176 (209)
T ss_pred             ----------HhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence                      23567899999999999999999999988863

>cd04128 Spg1 Spg1p

Probab=99.69  E-value=1.7e-16  Score=139.74  Aligned_cols=142  Identities=21%  Similarity=0.274  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCcccccceeeeecceeE--EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITE--FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE  214 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~--~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~e  214 (334)
                      +.|.++|.||.           |.+.  ..+.+++  +.+++||++||+.++..|..++++++++|+|+|+++.      
T Consensus        23 ~~f~~~~~~T~-----------g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~------   85 (182)
T cd04128          23 GEFDEDYIQTL-----------GVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRK------   85 (182)
T ss_pred             CCCCCCCCCcc-----------ceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCH------
Confidence            55666777765           3322  2333333  7789999999999999999999999999999999997      


Q ss_pred             ccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651         215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD  294 (334)
Q Consensus       215 d~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~  294 (334)
                          .++.+...|++.+.... ....| +|++||+||..+ +  ....-..          ..+.+.+|        .. 
T Consensus        86 ----~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~-~--~~~~~~~----------~~~~~~~~--------a~-  137 (182)
T cd04128          86 ----STLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFAD-L--PPEEQEE----------ITKQARKY--------AK-  137 (182)
T ss_pred             ----HHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhcccc-c--cchhhhh----------hHHHHHHH--------HH-
Confidence                67777777888776542 23456 688999998642 1  0000000          00111111        11 


Q ss_pred             CCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         295 EKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       295 ~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                       ..++.+++|||+++.||+++|+++.+.+++.
T Consensus       138 -~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~  168 (182)
T cd04128         138 -AMKAPLIFCSTSHSINVQKIFKIVLAKAFDL  168 (182)
T ss_pred             -HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence             1236689999999999999999999988763

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04134 Rho3 Rho3 subfamily

Probab=99.69  E-value=4.6e-16  Score=137.37  Aligned_cols=154  Identities=14%  Similarity=0.114  Sum_probs=101.8

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+...   .     ...+....+.+++||++||+.++..|..+|.+++++|+|+|+++.          
T Consensus        23 ~~~~~~~~~t~~~~~~---~-----~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~----------   84 (189)
T cd04134          23 GYFPQVYEPTVFENYV---H-----DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSP----------   84 (189)
T ss_pred             CCCCCccCCcceeeeE---E-----EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCH----------
Confidence            5566678887644321   0     111122347889999999999999999999999999999999997          


Q ss_pred             ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      +++.... .|+..+...  ..+.|++|++||+||..++-  ....+..    ........+.+.++..        . .+
T Consensus        85 ~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~--------~-~~  147 (189)
T cd04134          85 DSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARN--ERDDLQR----YGKHTISYEEGLAVAK--------R-IN  147 (189)
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChh--hHHHHhh----ccCCCCCHHHHHHHHH--------H-cC
Confidence            6666554 355555543  35789999999999976532  1111111    0011112222222211        1 13


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      .+.+++|||+++.||+++|.++.+.++...
T Consensus       148 ~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         148 ALRYLECSAKLNRGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence            367899999999999999999999888543

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0074|consensus

Probab=99.69  E-value=2.9e-17  Score=135.88  Aligned_cols=131  Identities=19%  Similarity=0.301  Sum_probs=108.3

Q ss_pred             eeeecceeEEEEEeeC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         156 RKATKGITEFTIVISN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      -.||-|++...+...+ +++.+||+|||++-|..|..||+++|++|||+|.+|.          .+++|.-+.+-++...
T Consensus        45 ltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~----------krfeE~~~el~ELlee  114 (185)
T KOG0074|consen   45 LTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDE----------KRFEEISEELVELLEE  114 (185)
T ss_pred             ccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCch----------HhHHHHHHHHHHHhhh
Confidence            3689999999999977 9999999999999999999999999999999998887          7888888888888888


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      ...+..|+.++.||+|+..+.   +.+.+..                     + +++.-...|.+++..+||..++++..
T Consensus       115 eKl~~vpvlIfankQdlltaa---~~eeia~---------------------k-lnl~~lrdRswhIq~csals~eg~~d  169 (185)
T KOG0074|consen  115 EKLAEVPVLIFANKQDLLTAA---KVEEIAL---------------------K-LNLAGLRDRSWHIQECSALSLEGSTD  169 (185)
T ss_pred             hhhhccceeehhhhhHHHhhc---chHHHHH---------------------h-cchhhhhhceEEeeeCccccccCccC
Confidence            888899999999999987652   2222211                     1 22332334778899999999999999


Q ss_pred             HHHHHHH
Q psy3651         315 VFNAVKN  321 (334)
Q Consensus       315 vf~~v~~  321 (334)
                      -.+||..
T Consensus       170 g~~wv~s  176 (185)
T KOG0074|consen  170 GSDWVQS  176 (185)
T ss_pred             cchhhhc
Confidence            9888865

>PTZ00369 Ras-like protein; Provisional

Probab=99.69  E-value=5.7e-16  Score=136.69  Aligned_cols=142  Identities=18%  Similarity=0.145  Sum_probs=101.8

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|...|.||..+....   +     ..+....+.+++||++|++.++..|..|+++++++|+|+|+++.          
T Consensus        28 ~~~~~~~~~t~~~~~~~---~-----~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~----------   89 (189)
T PTZ00369         28 NHFIDEYDPTIEDSYRK---Q-----CVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSR----------   89 (189)
T ss_pred             CCCCcCcCCchhhEEEE---E-----EEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCH----------
Confidence            45556777876543211   1     11222346788999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++.+...|++.+.+.....++|++|++||+|+..++.      +.            .+.+..+..          ...
T Consensus        90 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~------i~------------~~~~~~~~~----------~~~  141 (189)
T PTZ00369         90 SSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQ------VS------------TGEGQELAK----------SFG  141 (189)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc------cC------------HHHHHHHHH----------HhC
Confidence            66777777777776654446889999999999854321      10            111111111          123


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +.+++|||+++.||.++|.++.+.+.+.
T Consensus       142 ~~~~e~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        142 IPFLETSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             CEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            5689999999999999999999888754

>KOG0095|consensus

Probab=99.68  E-value=8.3e-17  Score=134.27  Aligned_cols=131  Identities=22%  Similarity=0.244  Sum_probs=101.4

Q ss_pred             eeecceeE--EEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         157 KATKGITE--FTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       157 ~~T~Gi~~--~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ..|+|++.  .+++++  .++++|||++||+++|+...+||+.++++|+|+|+|-.       ++...+.|++...++..
T Consensus        37 gatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscq-------psfdclpewlreie~ya  109 (213)
T KOG0095|consen   37 GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ-------PSFDCLPEWLREIEQYA  109 (213)
T ss_pred             CceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccC-------cchhhhHHHHHHHHHHh
Confidence            56888874  345554  48999999999999999999999999999999999975       44477888888888877


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      |++    +--|||+||.|+-.++-  -...+.+                     .|..     ...+|+.+|||++..||
T Consensus       110 n~k----vlkilvgnk~d~~drre--vp~qige---------------------efs~-----~qdmyfletsakea~nv  157 (213)
T KOG0095|consen  110 NNK----VLKILVGNKIDLADRRE--VPQQIGE---------------------EFSE-----AQDMYFLETSAKEADNV  157 (213)
T ss_pred             hcc----eEEEeeccccchhhhhh--hhHHHHH---------------------HHHH-----hhhhhhhhhcccchhhH
Confidence            754    45699999999877642  2222222                     1111     14578999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILHR  326 (334)
Q Consensus       313 ~~vf~~v~~~I~~~  326 (334)
                      +.+|..+.-.++..
T Consensus       158 e~lf~~~a~rli~~  171 (213)
T KOG0095|consen  158 EKLFLDLACRLISE  171 (213)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877654

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.68  E-value=5.9e-16  Score=133.81  Aligned_cols=114  Identities=18%  Similarity=0.148  Sum_probs=89.9

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +.+.+.+||++||+.+...|.++|.+++++|+|+|+++.          .++.....|+..+.+..  .++|++|++||+
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~--~~~piiiv~nK~  114 (166)
T cd00877          47 GKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSR----------VTYKNVPNWHRDLVRVC--GNIPIVLCGNKV  114 (166)
T ss_pred             EEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC--CCCcEEEEEEch
Confidence            457899999999999999999999999999999999987          67777767777776543  389999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+..+.+  ..                  .+.     .+.     ..+.+.+++|||+++.||+++|+++.+.+++
T Consensus       115 Dl~~~~~--~~------------------~~~-----~~~-----~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877         115 DIKDRKV--KA------------------KQI-----TFH-----RKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             hcccccC--CH------------------HHH-----HHH-----HHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            9864322  10                  000     111     1245778999999999999999999998875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01865 Rab3 Rab3 subfamily

Probab=99.67  E-value=8.5e-16  Score=132.13  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=88.7

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++|++.++..|..+++++++++||+|+++.          .++.+...|++.+... ...+.|++|++||+|
T Consensus        49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piivv~nK~D  117 (165)
T cd01865          49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKTY-SWDNAQVILVGNKCD  117 (165)
T ss_pred             EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCCEEEEEECcc
Confidence            47799999999999999999999999999999999986          6777777777776543 235789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++.  .                ..+.+.++..          ..++.+++|||+++.||.++|+++.+.+..
T Consensus       118 l~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         118 MEDERV--V----------------SSERGRQLAD----------QLGFEFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             cCcccc--c----------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            965432  0                1111111111          123568999999999999999999887653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.67  E-value=4.4e-16  Score=132.57  Aligned_cols=130  Identities=25%  Similarity=0.422  Sum_probs=98.1

Q ss_pred             eeecceeEEEEEe-eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         157 KATKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       157 ~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      .||+|+....+.. ++..+.+||++|++.++..|..++.+++++|||+|+++.          .++.+...++.++.+.+
T Consensus        28 ~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~----------~~~~~~~~~~~~~~~~~   97 (160)
T cd04156          28 IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE----------ARLDESQKELKHILKNE   97 (160)
T ss_pred             cCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHhch
Confidence            3566655544544 357899999999999999999999999999999999997          67888888999988876


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      ...+.|++|++||+|+... .  ....+...+                      .+.. ...+.+++++|||++++||.+
T Consensus        98 ~~~~~piilv~nK~Dl~~~-~--~~~~i~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gv~~  152 (160)
T cd04156          98 HIKGVPVVLLANKQDLPGA-L--TAEEITRRF----------------------KLKKYCSDRDWYVQPCSAVTGEGLAE  152 (160)
T ss_pred             hhcCCCEEEEEECcccccC-c--CHHHHHHHc----------------------CCcccCCCCcEEEEecccccCCChHH
Confidence            6678999999999998542 1  111222110                      1100 112456788999999999999


Q ss_pred             HHHHHHH
Q psy3651         315 VFNAVKN  321 (334)
Q Consensus       315 vf~~v~~  321 (334)
                      +|+++..
T Consensus       153 ~~~~i~~  159 (160)
T cd04156         153 AFRKLAS  159 (160)
T ss_pred             HHHHHhc
Confidence            9998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0086|consensus

Probab=99.67  E-value=1.1e-16  Score=134.01  Aligned_cols=131  Identities=20%  Similarity=0.243  Sum_probs=96.8

Q ss_pred             eeecceeEE--EEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         157 KATKGITEF--TIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       157 ~~T~Gi~~~--~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      .-|+|+...  -+.+  +.++++||||+||+++|+....||+++.+.++|+|+++.          .++.+--.|+..+-
T Consensus        39 sHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsr----------dsfnaLtnWL~DaR  108 (214)
T KOG0086|consen   39 SHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------DSFNALTNWLTDAR  108 (214)
T ss_pred             cceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccch----------hhHHHHHHHHHHHH
Confidence            457777643  2233  458999999999999999999999999999999999998          34444444444432


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      . -..+++.++|++||.||-.++-    +.+              .+|..|          .+.+.+-+++|||.+|+||
T Consensus       109 ~-lAs~nIvviL~GnKkDL~~~R~----Vtf--------------lEAs~F----------aqEnel~flETSa~TGeNV  159 (214)
T KOG0086|consen  109 T-LASPNIVVILCGNKKDLDPERE----VTF--------------LEASRF----------AQENELMFLETSALTGENV  159 (214)
T ss_pred             h-hCCCcEEEEEeCChhhcChhhh----hhH--------------HHHHhh----------hcccceeeeeecccccccH
Confidence            2 2346788999999999977642    111              122111          2235678999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILHR  326 (334)
Q Consensus       313 ~~vf~~v~~~I~~~  326 (334)
                      ++.|-.+..+|+.+
T Consensus       160 EEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  160 EEAFLKCARTILNK  173 (214)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999865

>KOG0091|consensus

Probab=99.67  E-value=1.7e-16  Score=134.27  Aligned_cols=133  Identities=17%  Similarity=0.218  Sum_probs=103.3

Q ss_pred             eeecceeEE--EEEee---CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         157 KATKGITEF--TIVIS---NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       157 ~~T~Gi~~~--~~~~~---~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      -||+|++..  -++++   .+++++|||+||+++|+...+||+|.-+++.|+|+++.          .+++....|.++.
T Consensus        38 dptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr----------~sfehv~~w~~ea  107 (213)
T KOG0091|consen   38 DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR----------ESFEHVENWVKEA  107 (213)
T ss_pred             CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch----------hhHHHHHHHHHHH
Confidence            578888732  23332   38999999999999999999999999999999999998          7777777777776


Q ss_pred             HhhcC-CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         232 INNVI-FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       232 ~~~~~-~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      .-+-. ..++-+.||+.|+||-.++-                  .+.++|.+|-          ...++.+.+|||+++.
T Consensus       108 ~m~~q~P~k~VFlLVGhKsDL~SqRq------------------Vt~EEaEklA----------a~hgM~FVETSak~g~  159 (213)
T KOG0091|consen  108 AMATQGPDKVVFLLVGHKSDLQSQRQ------------------VTAEEAEKLA----------ASHGMAFVETSAKNGC  159 (213)
T ss_pred             HHhcCCCCeeEEEEeccccchhhhcc------------------ccHHHHHHHH----------HhcCceEEEecccCCC
Confidence            44322 34567889999999977642                  2334443221          2367889999999999


Q ss_pred             hHHHHHHHHHHHHHHHh
Q psy3651         311 NIKIVFNAVKNTILHRN  327 (334)
Q Consensus       311 nI~~vf~~v~~~I~~~~  327 (334)
                      ||++.|..+.+.|...-
T Consensus       160 NVeEAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  160 NVEEAFDMLAQEIFQAI  176 (213)
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999999988754

>cd04117 Rab15 Rab15 subfamily

Probab=99.66  E-value=1.4e-15  Score=130.54  Aligned_cols=118  Identities=17%  Similarity=0.122  Sum_probs=89.6

Q ss_pred             EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.+++  +.+++||++|++.++..|..|+.+++++++|+|+++.          +++.+...|++.+.+. ...+.|++
T Consensus        41 ~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~sf~~~~~~~~~~~~~-~~~~~~ii  109 (161)
T cd04117          41 TIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE----------RSYQHIMKWVSDVDEY-APEGVQKI  109 (161)
T ss_pred             EEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCeEE
Confidence            344443  6789999999999999999999999999999999997          7788888888777654 23578999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +++||.|+.+++-   .               ..+.+..+.+          ...+.+++|||+++.||+++|.++.+.
T Consensus       110 lvgnK~Dl~~~~~---v---------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         110 LIGNKADEEQKRQ---V---------------GDEQGNKLAK----------EYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEECcccccccC---C---------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            9999999865431   1               0112221211          122567999999999999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.66  E-value=1.6e-15  Score=129.55  Aligned_cols=140  Identities=18%  Similarity=0.166  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..|.....        ..+..+.+.+.+||++||+.++..|..++.+++++|+|+|+++.          
T Consensus        23 ~~~~~~~~~t~~~~~~~~--------~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------   84 (164)
T smart00173       23 GHFVDDYDPTIEDSYRKQ--------IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDR----------   84 (164)
T ss_pred             CcCCcccCCchhhhEEEE--------EEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCH----------
Confidence            455677888876543211        11222346788999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      ..+.+...++..+.+.....+.|+++++||+|+..++.  .                ..+.+..+..          ...
T Consensus        85 ~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~--~----------------~~~~~~~~~~----------~~~  136 (164)
T smart00173       85 QSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV--V----------------STEEGKELAR----------QWG  136 (164)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce--E----------------cHHHHHHHHH----------HcC
Confidence            67777777777776655455789999999999865421  0                1111211221          123


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +.++++||+++.||.++|+++.+.+.
T Consensus       137 ~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      137 CPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            57899999999999999999988664

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>KOG0081|consensus

Probab=99.66  E-value=3.3e-16  Score=131.93  Aligned_cols=132  Identities=20%  Similarity=0.251  Sum_probs=107.1

Q ss_pred             eeeccee--EEEEEee-----------CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHH
Q psy3651         157 KATKGIT--EFTIVIS-----------NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE  223 (334)
Q Consensus       157 ~~T~Gi~--~~~~~~~-----------~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~e  223 (334)
                      +.|+||+  +..+.++           .+.+++|||+||+++|++...+|+++-+.+.++|+++.          .++-+
T Consensus        39 IsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~e----------qSFLn  108 (219)
T KOG0081|consen   39 ISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSE----------QSFLN  108 (219)
T ss_pred             EEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccch----------HHHHH
Confidence            5577877  3344432           26899999999999999999999999999999999997          88899


Q ss_pred             HHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE
Q psy3651         224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF  303 (334)
Q Consensus       224 sl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~  303 (334)
                      ..+|+.++-.+.+..+.-|+|++||+||..++.  ..                .+.|        .++.  .+..+++++
T Consensus       109 vrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~--Vs----------------~~qa--------~~La--~kyglPYfE  160 (219)
T KOG0081|consen  109 VRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV--VS----------------EDQA--------AALA--DKYGLPYFE  160 (219)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEcCccchhhhhh--hh----------------HHHH--------HHHH--HHhCCCeee
Confidence            999999998888888889999999999988765  11                1111        1111  124688999


Q ss_pred             EeeecCchHHHHHHHHHHHHHHH
Q psy3651         304 TTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       304 tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |||-++.||++..+-+.+.|+++
T Consensus       161 TSA~tg~Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  161 TSACTGTNVEKAVELLLDLVMKR  183 (219)
T ss_pred             eccccCcCHHHHHHHHHHHHHHH
Confidence            99999999999999999988875

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.66  E-value=1e-15  Score=141.38  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=102.9

Q ss_pred             CCCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcc
Q psy3651         138 NSPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED  215 (334)
Q Consensus       138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed  215 (334)
                      .+.|.+.|.||..|...          ..+.++  .+.++|||++|++.++.+|..++.+++++|+|+|+++.       
T Consensus        22 ~~~f~~~y~pTi~d~~~----------k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~-------   84 (247)
T cd04143          22 GGRFEEQYTPTIEDFHR----------KLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNR-------   84 (247)
T ss_pred             cCCCCCCCCCChhHhEE----------EEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCH-------
Confidence            36677789998876422          122233  36788999999999999999999999999999999997       


Q ss_pred             cccccHHHHHHHHHHHHhhcC--------CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHH
Q psy3651         216 RRTNRLHESRNIFDTIINNVI--------FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNY  287 (334)
Q Consensus       216 ~~~nrl~esl~lf~~i~~~~~--------~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~  287 (334)
                         .++++...|++++....+        ..+.|+||++||+|+..++-    ..              .+++.+++.  
T Consensus        85 ---~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----v~--------------~~ei~~~~~--  141 (247)
T cd04143          85 ---ESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----VQ--------------RDEVEQLVG--  141 (247)
T ss_pred             ---HHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----cC--------------HHHHHHHHH--
Confidence               788888888888876533        35789999999999865321    00              111111111  


Q ss_pred             HHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         288 FKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       288 F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                            . ...+.+++|||+++.||+++|+++....
T Consensus       142 ------~-~~~~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         142 ------G-DENCAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             ------h-cCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence                  0 1346789999999999999999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.66  E-value=1.9e-15  Score=130.23  Aligned_cols=116  Identities=17%  Similarity=0.190  Sum_probs=88.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++|++.+...|..++++++++|+|+|+++.          .++.+...|+..+.... ..+.|++|++||.|
T Consensus        51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~D  119 (167)
T cd01867          51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------KSFENIRNWMRNIEEHA-SEDVERMLVGNKCD  119 (167)
T ss_pred             EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence            36789999999999999999999999999999999986          56666667777665532 35789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +.+++-    ..              .+.+..+..          ...+.++++||+.+.||.++|.++.+.+++
T Consensus       120 l~~~~~----~~--------------~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         120 MEEKRV----VS--------------KEEGEALAD----------EYGIKFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             cccccC----CC--------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            975421    11              111111111          123568999999999999999999998875

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.66  E-value=1.6e-15  Score=131.01  Aligned_cols=152  Identities=15%  Similarity=0.186  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|...|.||..+....   ++.     +....+.+++||++||+.++..|..++++++++|+|+|+++.          
T Consensus        21 ~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------   82 (174)
T smart00174       21 NAFPEDYVPTVFENYSA---DVE-----VDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSP----------   82 (174)
T ss_pred             CCCCCCCCCcEEeeeeE---EEE-----ECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCH----------
Confidence            55667788876543211   111     112335689999999999999999999999999999999986          


Q ss_pred             ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++++... |+..+...  ..++|++|++||+|+..+.-  ...++..    ....+-+.+.+..+.+..         .
T Consensus        83 ~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---------~  145 (174)
T smart00174       83 ASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKS--TLRELSK----QKQEPVTYEQGEALAKRI---------G  145 (174)
T ss_pred             HHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChh--hhhhhhc----ccCCCccHHHHHHHHHHc---------C
Confidence            66766654 55555443  35799999999999976422  1111211    111222333333222211         2


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ...++++||+++.||.++|+.+.+.+++
T Consensus       146 ~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      146 AVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence            2368899999999999999999987753

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.66  E-value=5.2e-16  Score=138.30  Aligned_cols=127  Identities=17%  Similarity=0.131  Sum_probs=83.1

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN-IFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ..+++++|||+||+.  +....||++++++|+|+|+++.          .++++... |...+...  ..++|++|++||
T Consensus        64 ~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~----------~Sf~~~~~~w~~~i~~~--~~~~piilvgNK  129 (195)
T cd01873          64 VSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASP----------NSLRNVKTMWYPEIRHF--CPRVPVILVGCK  129 (195)
T ss_pred             EEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCCh----------hHHHHHHHHHHHHHHHh--CCCCCEEEEEEc
Confidence            357899999999974  3455689999999999999997          67777664 54554332  257899999999


Q ss_pred             CCcchhhhcc---ccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         249 TDLLAEKLRT---SKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       249 ~Dl~~eki~~---~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +||.......   ...++..-  --....-..+++.++.++          .++.+++|||+++.||+++|+.+.+.
T Consensus       130 ~DL~~~~~~~~~~~~~~~~~~--~~~~~~V~~~e~~~~a~~----------~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         130 LDLRYADLDEVNRARRPLARP--IKNADILPPETGRAVAKE----------LGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             hhccccccchhhhcccccccc--cccCCccCHHHHHHHHHH----------hCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            9985421100   00000000  000112234444433322          34678999999999999999988753

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.66  E-value=1.4e-15  Score=129.63  Aligned_cols=139  Identities=20%  Similarity=0.168  Sum_probs=99.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|...|.||..+......        .+....+.+++||++|++.++..|..++++++++|+|+|+++.          
T Consensus        25 ~~~~~~~~~t~~~~~~~~~--------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------   86 (164)
T cd04145          25 SYFVTDYDPTIEDSYTKQC--------EIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDR----------   86 (164)
T ss_pred             CCCCcccCCCccceEEEEE--------EECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH----------
Confidence            3455778887654321111        1222346788999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++.+...|+..+.+.....+.|++|++||+|+..++.      +            ..+.+.++..          ..+
T Consensus        87 ~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~------~------------~~~~~~~~~~----------~~~  138 (164)
T cd04145          87 GSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK------V------------SREEGQELAR----------KLK  138 (164)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce------e------------cHHHHHHHHH----------HcC
Confidence            67777777888877654446789999999999865421      0            1111111111          123


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +.++++||+++.||+++|+++.+.+
T Consensus       139 ~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         139 IPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            5678999999999999999987654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.66  E-value=7.3e-16  Score=131.39  Aligned_cols=117  Identities=13%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC----CCCCcEEEE
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI----FRNVSFILF  245 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~----~~~~piiL~  245 (334)
                      ..+.+++||++|++.++..|..++++++++|+|+|+++.          +++.+...|+..+.....    ..+.|++++
T Consensus        47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~~piilv  116 (168)
T cd04119          47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDR----------QSFEALDSWLKEMKQEGGPHGNMENIVVVVC  116 (168)
T ss_pred             eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhccccccCCCceEEEE
Confidence            347889999999999999999999999999999999997          566666666666654321    256899999


Q ss_pred             EeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         246 LNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       246 lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +||+|+..++.   .               +.+.+..+..          ..++.+++|||+++.||.++|+++.+.++
T Consensus       117 ~nK~Dl~~~~~---~---------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         117 ANKIDLTKHRA---V---------------SEDEGRLWAE----------SKGFKYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             EEchhcccccc---c---------------CHHHHHHHHH----------HcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            99999864321   0               1111111111          12366899999999999999999998876

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04109 Rab28 Rab28 subfamily

Probab=99.65  E-value=8.8e-16  Score=138.43  Aligned_cols=119  Identities=13%  Similarity=0.201  Sum_probs=89.1

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEEEEeC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFILFLNK  248 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL~lNK  248 (334)
                      .+.+.+||++||+.++..|..|+++++++|+|+|+++.          +++.....|+..+.+...  ..+.|++|++||
T Consensus        49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~----------~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK  118 (215)
T cd04109          49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNS----------QSFENLEDWYSMVRKVLKSSETQPLVVLVGNK  118 (215)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhccccCCCceEEEEEEC
Confidence            46889999999999999999999999999999999997          667666666666654321  245789999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      .|+..++.   .               ..+.+..+..          ..++.++++||++|+||.++|+++.+.+....
T Consensus       119 ~DL~~~~~---v---------------~~~~~~~~~~----------~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~~  169 (215)
T cd04109         119 TDLEHNRT---V---------------KDDKHARFAQ----------ANGMESCLVSAKTGDRVNLLFQQLAAELLGVD  169 (215)
T ss_pred             cccccccc---c---------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            99965321   0               0111111111          12356889999999999999999999888653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.65  E-value=2e-15  Score=129.88  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=86.3

Q ss_pred             EEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651         167 IVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL  244 (334)
Q Consensus       167 ~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL  244 (334)
                      +.+++  +.+.+||++||+.     ..|+++++++|+|+|+++.          .+++++..|++.+.+.....++|++|
T Consensus        40 i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~----------~sf~~~~~~~~~i~~~~~~~~~piil  104 (158)
T cd04103          40 VLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENE----------ASFQTVYNLYHQLSSYRNISEIPLIL  104 (158)
T ss_pred             EEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            44444  6789999999974     3578899999999999998          88999889999988776567899999


Q ss_pred             EEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         245 FLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       245 ~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ++||.|+....    ..++.            .+.+.++.++         .+.+.+++|||+++.||+++|..+.+.
T Consensus       105 vgnK~Dl~~~~----~~~v~------------~~~~~~~~~~---------~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         105 VGTQDAISESN----PRVID------------DARARQLCAD---------MKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EeeHHHhhhcC----CcccC------------HHHHHHHHHH---------hCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            99999985321    11111            1222222211         134778999999999999999988753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0394|consensus

Probab=99.65  E-value=7.5e-16  Score=132.84  Aligned_cols=123  Identities=14%  Similarity=0.164  Sum_probs=90.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh---cCCCCCcEEEEE
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN---VIFRNVSFILFL  246 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~---~~~~~~piiL~l  246 (334)
                      +.+.++||||+||++++++-..+|+++|+++.|+|+.+.          .+++.--.|-++.+..   .....-|+||+|
T Consensus        56 ~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~----------~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG  125 (210)
T KOG0394|consen   56 RSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP----------KSFENLENWRKEFLIQASPQDPETFPFVILG  125 (210)
T ss_pred             eEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh----------hhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence            448899999999999999999999999999999999997          3333322333333332   223557999999


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ||+|+...+-  ..+              +.+.|+.+-..         ++++++|+|||++..||...|..+....+..
T Consensus       126 NKiD~~~~~~--r~V--------------S~~~Aq~WC~s---------~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~  180 (210)
T KOG0394|consen  126 NKIDVDGGKS--RQV--------------SEKKAQTWCKS---------KGNIPYFETSAKEATNVDEAFEEIARRALAN  180 (210)
T ss_pred             ccccCCCCcc--cee--------------eHHHHHHHHHh---------cCCceeEEecccccccHHHHHHHHHHHHHhc
Confidence            9999976421  111              22334434433         2679999999999999999999999988865


Q ss_pred             h
Q psy3651         327 N  327 (334)
Q Consensus       327 ~  327 (334)
                      .
T Consensus       181 E  181 (210)
T KOG0394|consen  181 E  181 (210)
T ss_pred             c
Confidence            4

>cd04110 Rab35 Rab35 subfamily

Probab=99.65  E-value=2.7e-15  Score=133.62  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=90.9

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+.+||++||+.++..|..|+++++++|+|+|+++.          .++.+...|+..+.+.  ....|++|++||+|+
T Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~----------~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl  122 (199)
T cd04110          55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG----------ESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDD  122 (199)
T ss_pred             EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECccc
Confidence            6789999999999999999999999999999999997          6777787888877654  357899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ...+.    .              +.+.+..+..          ..++.+++|||+++.||.++|+++.+.+++..
T Consensus       123 ~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~  170 (199)
T cd04110         123 PERKV----V--------------ETEDAYKFAG----------QMGISLFETSAKENINVEEMFNCITELVLRAK  170 (199)
T ss_pred             ccccc----c--------------CHHHHHHHHH----------HcCCEEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            65321    0              0111111111          12367899999999999999999999988653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.64  E-value=1.6e-15  Score=131.76  Aligned_cols=141  Identities=13%  Similarity=0.121  Sum_probs=98.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||...-..         ...+.+.  .+.+++||++||+.++..|..+|++++++|+|+|+++.        
T Consensus        23 ~~f~~~~~~t~~~~~~---------~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~--------   85 (170)
T cd04108          23 DVFDKNYKATIGVDFE---------MERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV--------   85 (170)
T ss_pred             CCCCCCCCCceeeEEE---------EEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH--------
Confidence            5566778887642211         1223332  36789999999999999999999999999999999986        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        ..+.....|+..+.+.....+.|++||+||.|+..+.    .....            .+.+..+..          .
T Consensus        86 --~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~----~~~~~------------~~~~~~~~~----------~  137 (170)
T cd04108          86 --ASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA----QYALM------------EQDAIKLAA----------E  137 (170)
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc----ccccc------------HHHHHHHHH----------H
Confidence              5666777777777665444567899999999984431    10110            111111111          1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      .+..+++|||+++.||.++|+.+...+.
T Consensus       138 ~~~~~~e~Sa~~g~~v~~lf~~l~~~~~  165 (170)
T cd04108         138 MQAEYWSVSALSGENVREFFFRVAALTF  165 (170)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            2346789999999999999999988764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04111 Rab39 Rab39 subfamily

Probab=99.64  E-value=5.1e-15  Score=133.32  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=92.4

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+++||++||+.++..|..|+++++++|+|+|+++.          +++.+...|+..+.........|++|++||.|+
T Consensus        52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl  121 (211)
T cd04111          52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNR----------ESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL  121 (211)
T ss_pred             EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence            6789999999999999999999999999999999997          778888888888876544456789999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ...+.  .                ..+.+..+.+          ..++.+++|||+++.||.++|+++.+.+.++
T Consensus       122 ~~~~~--v----------------~~~~~~~~~~----------~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         122 ESQRQ--V----------------TREEAEKLAK----------DLGMKYIETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             ccccc--c----------------CHHHHHHHHH----------HhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            65321  0                1111211111          1337789999999999999999999988765

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04177 RSR1 RSR1 subgroup

Probab=99.64  E-value=3.8e-15  Score=128.43  Aligned_cols=142  Identities=17%  Similarity=0.140  Sum_probs=100.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+...   +++     .+...++.+++||++|++.++..|..++++++++|+|+|+++.          
T Consensus        24 ~~~~~~~~~t~~~~~~---~~~-----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~----------   85 (168)
T cd04177          24 NVFIESYDPTIEDSYR---KQV-----EIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSE----------   85 (168)
T ss_pred             CCCCcccCCcchheEE---EEE-----EECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCH----------
Confidence            5566777776543321   111     1112346889999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      ..++....+++.+.......++|+++++||.|+...+.  .                ..+.+.++ .+.        .+.
T Consensus        86 ~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~--~----------------~~~~~~~~-~~~--------~~~  138 (168)
T cd04177          86 ASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQ--V----------------SREDGVSL-SQQ--------WGN  138 (168)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCc--c----------------CHHHHHHH-HHH--------cCC
Confidence            67777777777776644456799999999999865431  0                01111111 111        123


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +.+++|||+.+.||.++|+++.+.++-
T Consensus       139 ~~~~~~SA~~~~~i~~~f~~i~~~~~~  165 (168)
T cd04177         139 VPFYETSARKRTNVDEVFIDLVRQIIC  165 (168)
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            668899999999999999999987653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04140 ARHI_like ARHI subfamily

Probab=99.64  E-value=1.3e-15  Score=131.05  Aligned_cols=137  Identities=15%  Similarity=0.160  Sum_probs=95.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|...|.||..+..+.        ......+...+.+||++||+.++..|..++.+++++|+|+|+++.          
T Consensus        24 ~~f~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------   85 (165)
T cd04140          24 GTFRESYIPTIEDTYRQ--------VISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK----------   85 (165)
T ss_pred             CCCCCCcCCcchheEEE--------EEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH----------
Confidence            55667788876543211        112222457789999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         219 NRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                      .++.+...+++.+.+..  ...+.|++|++||+|+...+-      +.            .+.+..+..          .
T Consensus        86 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------v~------------~~~~~~~~~----------~  137 (165)
T cd04140          86 QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE------VS------------SNEGAACAT----------E  137 (165)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe------ec------------HHHHHHHHH----------H
Confidence            56666666665554322  235789999999999855211      10            111111111          1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      ..+.+++|||+++.||+++|+++.+
T Consensus       138 ~~~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         138 WNCAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             hCCcEEEeecCCCCCHHHHHHHHHh
Confidence            2356899999999999999999875

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.63  E-value=1.8e-15  Score=128.66  Aligned_cols=131  Identities=23%  Similarity=0.373  Sum_probs=104.0

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..+|+|+....+.+++..+.+||++|++.++..|..++.+++++++|+|+++.          .++.++..++..++...
T Consensus        27 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~~~~~~~~~~~~~~~   96 (158)
T cd00878          27 TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR----------ERIEEAKEELHKLLNEE   96 (158)
T ss_pred             CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCc
Confidence            35677888778888889999999999999999999999999999999999997          68999999999998876


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|+++++||+|+....   ....+.+                     . .+......+.+.++++||+++.|+.++
T Consensus        97 ~~~~~piiiv~nK~D~~~~~---~~~~~~~---------------------~-~~~~~~~~~~~~~~~~Sa~~~~gv~~~  151 (158)
T cd00878          97 ELKGVPLLIFANKQDLPGAL---SVSELIE---------------------K-LGLEKILGRRWHIQPCSAVTGDGLDEG  151 (158)
T ss_pred             ccCCCcEEEEeeccCCcccc---CHHHHHH---------------------h-hChhhccCCcEEEEEeeCCCCCCHHHH
Confidence            56789999999999986531   1111111                     1 111111235678999999999999999


Q ss_pred             HHHHHH
Q psy3651         316 FNAVKN  321 (334)
Q Consensus       316 f~~v~~  321 (334)
                      |+++.+
T Consensus       152 ~~~l~~  157 (158)
T cd00878         152 LDWLLQ  157 (158)
T ss_pred             HHHHhh
Confidence            998864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.63  E-value=2.4e-15  Score=126.33  Aligned_cols=129  Identities=19%  Similarity=0.328  Sum_probs=97.6

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|++...+..+++.+.+||++|++.+++.|..++.+++++++|+|+++.          ..+.....++..+......
T Consensus        30 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~   99 (159)
T cd04159          30 PTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR----------TALEAAKNELHDLLEKPSL   99 (159)
T ss_pred             CCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHcChhh
Confidence            456666666666778899999999999999999999999999999999987          5667777778887776556


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|+++++||+|+..+.   ....+...                      ..+.....+.+.++.+||+++.||.++|+
T Consensus       100 ~~~p~iiv~nK~D~~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159         100 EGIPLLVLGNKNDLPGAL---SVDELIEQ----------------------MNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             cCCCEEEEEeCccccCCc---CHHHHHHH----------------------hCcccccCCceEEEEEEeccCCChHHHHH
Confidence            788999999999986431   11111110                      11111223457789999999999999999


Q ss_pred             HHHH
Q psy3651         318 AVKN  321 (334)
Q Consensus       318 ~v~~  321 (334)
                      ++.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9864

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.63  E-value=4.6e-15  Score=127.27  Aligned_cols=116  Identities=18%  Similarity=0.222  Sum_probs=89.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+.... ..+.|+++++||+|
T Consensus        50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~D  118 (166)
T cd01869          50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ----------ESFNNVKQWLQEIDRYA-SENVNKLLVGNKCD  118 (166)
T ss_pred             EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEEEEEEChh
Confidence            36789999999999999999999999999999999997          67777777777765432 35689999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++.    .+              .+.+..+..          ...+.++++||+++.||.++|.++.+.+.+
T Consensus       119 l~~~~~----~~--------------~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~  165 (166)
T cd01869         119 LTDKRV----VD--------------YSEAQEFAD----------ELGIPFLETSAKNATNVEQAFMTMAREIKK  165 (166)
T ss_pred             cccccC----CC--------------HHHHHHHHH----------HcCCeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            865421    11              112221111          124578999999999999999999988753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0083|consensus

Probab=99.63  E-value=3.4e-16  Score=128.39  Aligned_cols=135  Identities=18%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             eeeecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         156 RKATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       156 ~~~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      .+.|+||+..  -++++  .+++++||++||+++|+....||+++++++.++|+++.          .+++....|+.+|
T Consensus        27 fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiank----------asfdn~~~wlsei   96 (192)
T KOG0083|consen   27 FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANK----------ASFDNCQAWLSEI   96 (192)
T ss_pred             eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccc----------hhHHHHHHHHHHH
Confidence            3567888743  33443  48899999999999999999999999999999999998          7888888888888


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                      -... -..+.+.|++||+|+..++.  ...+  +           .           ..+..  ...+++.+|||++|-|
T Consensus        97 ~ey~-k~~v~l~llgnk~d~a~er~--v~~d--d-----------g-----------~kla~--~y~ipfmetsaktg~n  147 (192)
T KOG0083|consen   97 HEYA-KEAVALMLLGNKCDLAHERA--VKRD--D-----------G-----------EKLAE--AYGIPFMETSAKTGFN  147 (192)
T ss_pred             HHHH-HhhHhHhhhccccccchhhc--cccc--h-----------H-----------HHHHH--HHCCCceecccccccc
Confidence            6542 24467899999999977654  1111  0           0           11111  2468899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q psy3651         312 IKIVFNAVKNTILHRNLR  329 (334)
Q Consensus       312 I~~vf~~v~~~I~~~~l~  329 (334)
                      |...|-.+.+.+.+..++
T Consensus       148 vd~af~~ia~~l~k~~~~  165 (192)
T KOG0083|consen  148 VDLAFLAIAEELKKLKMG  165 (192)
T ss_pred             HhHHHHHHHHHHHHhccC
Confidence            999999999998876553

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.63  E-value=1.6e-15  Score=132.87  Aligned_cols=122  Identities=17%  Similarity=0.159  Sum_probs=89.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN-IFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+++||++||+.++..|..++++++++|||+|+++.          +++++... |+..+...  ..+.|++|++||.
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~  115 (187)
T cd04132          48 IIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP----------TSLDNVEDKWFPEVNHF--CPGTPIMLVGLKT  115 (187)
T ss_pred             EEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEeCh
Confidence            36789999999999999999999999999999999997          67777654 44444332  3578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      |+..+.-  ....+            ..+.+.++...          .++ .+++|||+++.||.++|..+.+.++....
T Consensus       116 Dl~~~~~--~~~~v------------~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~  171 (187)
T cd04132         116 DLRKDKN--LDRKV------------TPAQAESVAKK----------QGAFAYLECSAKTMENVEEVFDTAIEEALKKEG  171 (187)
T ss_pred             hhhhCcc--ccCCc------------CHHHHHHHHHH----------cCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence            9865421  11011            11222222211          123 68999999999999999999999987643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04135 Tc10 TC10 subfamily

Probab=99.62  E-value=7.8e-15  Score=126.68  Aligned_cols=151  Identities=15%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+......        .+.-..+.+++||++|+..++..|..++.+++++|+|+|+++.          
T Consensus        23 ~~~~~~~~~t~~~~~~~~~--------~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~----------   84 (174)
T cd04135          23 DAFPEEYVPTVFDHYAVSV--------TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP----------   84 (174)
T ss_pred             CCCCCCCCCceeeeeEEEE--------EECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCH----------
Confidence            5566778887655432211        1111235678999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++++....|...+... ..+.|++|++||+|+..+..  ....+..    +.....+.+.+..+.++.         ..
T Consensus        85 ~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---------~~  148 (174)
T cd04135          85 ASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPK--TLARLND----MKEKPVTVEQGQKLAKEI---------GA  148 (174)
T ss_pred             HHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChh--hHHHHhh----ccCCCCCHHHHHHHHHHc---------CC
Confidence            55655543333333322 46789999999999865422  1111211    122223333443332211         22


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ..+++|||+++.||+++|+.+.+.+
T Consensus       149 ~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         149 HCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             CEEEEecCCcCCCHHHHHHHHHHHh
Confidence            3578999999999999999998876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.62  E-value=7.5e-15  Score=127.30  Aligned_cols=147  Identities=14%  Similarity=0.169  Sum_probs=96.4

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|...|.||..|.....   +     .+.-..+.+++||++||+.++..|..++++++++|||+|+++.          
T Consensus        23 ~~~~~~~~~t~~~~~~~~---~-----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~----------   84 (173)
T cd04130          23 NGYPTEYVPTAFDNFSVV---V-----LVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNP----------   84 (173)
T ss_pred             CCCCCCCCCceeeeeeEE---E-----EECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCH----------
Confidence            566678888865543221   1     1111236788999999999999999999999999999999997          


Q ss_pred             ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++.+... |+..+...  ..+.|++|++||.|+..+.-     .+... ..+.......+.+..+.++.         +
T Consensus        85 ~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~-----~~~~~-~~~~~~~v~~~~~~~~a~~~---------~  147 (173)
T cd04130          85 SSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVN-----VLIQL-ARYGEKPVSQSRAKALAEKI---------G  147 (173)
T ss_pred             HHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChh-----HHHHH-hhcCCCCcCHHHHHHHHHHh---------C
Confidence            66766653 55555432  35689999999999854310     01110 11111222334444333211         2


Q ss_pred             CeEEEEEeeecCchHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      ...+++|||+++.||+++|+.+.
T Consensus       148 ~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         148 ACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHH
Confidence            23688999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04116 Rab9 Rab9 subfamily

Probab=99.62  E-value=5.5e-15  Score=127.28  Aligned_cols=115  Identities=16%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEE
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFL  246 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~l  246 (334)
                      +.+.+++||++||+.++..|..++++++++|+|+|+++.          .++.....|...+....   ...+.|++|++
T Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~  121 (170)
T cd04116          52 HFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDS----------QSFQNLSNWKKEFIYYADVKEPESFPFVVLG  121 (170)
T ss_pred             eEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhcccccCCCCcEEEEE
Confidence            347789999999999999999999999999999999997          55555555555555432   23568999999


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ||.|+....+  .                 .+++.++..+         .....+++|||+++.||.++|.++.+.
T Consensus       122 nK~Dl~~~~~--~-----------------~~~~~~~~~~---------~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         122 NKNDIPERQV--S-----------------TEEAQAWCRE---------NGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ECcccccccc--C-----------------HHHHHHHHHH---------CCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            9999863322  1                 1122222211         122468899999999999999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04124 RabL2 RabL2 subfamily

Probab=99.62  E-value=5.4e-15  Score=126.83  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=85.9

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ..+.+++||++||+.++..|..|+++++++|+|+|+++.          ..+.+...|+..+.+.  ..+.|++|++||+
T Consensus        47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~  114 (161)
T cd04124          47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRK----------ITYKNLSKWYEELREY--RPEIPCIVVANKI  114 (161)
T ss_pred             EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCcEEEEEECc
Confidence            457889999999999999999999999999999999986          4555555666666443  2568999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..+ .  .                  +....+     ..     ...+.++.+||+++.|+.++|+.+.+.++++
T Consensus       115 Dl~~~-~--~------------------~~~~~~-----~~-----~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         115 DLDPS-V--T------------------QKKFNF-----AE-----KHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             cCchh-H--H------------------HHHHHH-----HH-----HcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            98432 1  0                  001111     10     1235688999999999999999999888764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04125 RabA_like RabA-like subfamily

Probab=99.61  E-value=1.3e-14  Score=127.64  Aligned_cols=117  Identities=19%  Similarity=0.216  Sum_probs=89.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+.... ..+.|++|++||.|
T Consensus        48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~D  116 (188)
T cd04125          48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQ----------ESFENLKFWINEINRYA-RENVIKVIVANKSD  116 (188)
T ss_pred             EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEECCC
Confidence            46789999999999999999999999999999999987          56666666666665432 24589999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +.+.+.  .                +.+.+..+..          ...+.++++||+++.||.++|.++.+.++++
T Consensus       117 l~~~~~--v----------------~~~~~~~~~~----------~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         117 LVNNKV--V----------------DSNIAKSFCD----------SLNIPFFETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             Cccccc--C----------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            875432  0                1112211111          1245689999999999999999999988764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.61  E-value=1.2e-14  Score=123.93  Aligned_cols=116  Identities=18%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ..+.+++||++|++.+...+..++++++++|+|+|+++.          +++.....|+..+..... .++|++|++||.
T Consensus        46 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~----------~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~  114 (162)
T PF00071_consen   46 KPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE----------ESFENLKKWLEEIQKYKP-EDIPIIVVGNKS  114 (162)
T ss_dssp             EEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBH----------HHHHTHHHHHHHHHHHST-TTSEEEEEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccc----------cccccccccccccccccc-ccccceeeeccc
Confidence            347799999999999999999999999999999999997          777777777777665543 568999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      |+..++.    .+              .+++.++.+          ..++.++++||+++.||.++|..+.+.|+
T Consensus       115 D~~~~~~----v~--------------~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  115 DLSDERE----VS--------------VEEAQEFAK----------ELGVPYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             TGGGGSS----SC--------------HHHHHHHHH----------HTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             ccccccc----ch--------------hhHHHHHHH----------HhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            9876321    11              122222221          12378999999999999999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.60  E-value=8.5e-15  Score=126.60  Aligned_cols=115  Identities=18%  Similarity=0.254  Sum_probs=87.2

Q ss_pred             CcceeeeecCCccccc-ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQR-RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r-~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+++||++|++.++ ..|.+++++++++|+|+|+++.          .++.....|+..+.......++|++|++||+
T Consensus        50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  119 (170)
T cd04115          50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNM----------ASFHSLPSWIEECEQHSLPNEVPRILVGNKC  119 (170)
T ss_pred             EEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            3788999999999887 5799999999999999999987          6677777777777665445679999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec---CchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD---TENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d---~~nI~~vf~~v~~~I  323 (334)
                      |+...+.  ..                .+.+..+.        .  ...+.+++|||++   +.+|.++|..+.+.+
T Consensus       120 Dl~~~~~--~~----------------~~~~~~~~--------~--~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         120 DLREQIQ--VP----------------TDLAQRFA--------D--AHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cchhhcC--CC----------------HHHHHHHH--------H--HcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            9865431  11                11111111        1  1236789999999   899999999988755

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04112 Rab26 Rab26 subfamily

Probab=99.60  E-value=2.4e-14  Score=126.51  Aligned_cols=119  Identities=18%  Similarity=0.256  Sum_probs=90.7

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.++|||++||+.++..|..++.+++++|+|+|+++.          .++.+...|+..+... ...+.|++|++||.|
T Consensus        49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~----------~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~D  117 (191)
T cd04112          49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNK----------ASFDNIRAWLTEIKEY-AQEDVVIMLLGNKAD  117 (191)
T ss_pred             EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCcEEEEEEccc
Confidence            36789999999999999999999999999999999997          6677777777766553 234789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      +..++.   .               ..+.+..+. +         ...+.++++||+++.||.++|.++.+.+.....
T Consensus       118 l~~~~~---~---------------~~~~~~~l~-~---------~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~  167 (191)
T cd04112         118 MSGERV---V---------------KREDGERLA-K---------EYGVPFMETSAKTGLNVELAFTAVAKELKHRKY  167 (191)
T ss_pred             chhccc---c---------------CHHHHHHHH-H---------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            865321   0               011111111 1         123568999999999999999999999887653

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04142 RRP22 RRP22 subfamily

Probab=99.59  E-value=2.3e-14  Score=127.92  Aligned_cols=142  Identities=13%  Similarity=0.165  Sum_probs=97.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccc----ccc----ccccccCCCeEEEEEeCCCc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQ----RRK----WFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~----r~k----w~~~f~~v~~iIfv~dls~~  208 (334)
                      +.|.+.|.||..+-...         ..+.+++  +.+++|||+|++.+    ..-    ...++++++++|+|+|+++.
T Consensus        23 ~~f~~~~~pt~~~~~~~---------~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~   93 (198)
T cd04142          23 QEFPEEYIPTEHRRLYR---------PAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSP   93 (198)
T ss_pred             CCCCcccCCccccccce---------eEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCH
Confidence            56667788876422111         1222333  67889999997642    122    33457899999999999997


Q ss_pred             cchhhcccccccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHH
Q psy3651         209 DQTLVEDRRTNRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLN  286 (334)
Q Consensus       209 d~~l~ed~~~nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~  286 (334)
                                .+++....|++.+.+..  ...++|++|++||+|+..++.  ..                .+.+..+.. 
T Consensus        94 ----------~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~--~~----------------~~~~~~~~~-  144 (198)
T cd04142          94 ----------DSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF--AP----------------RHVLSVLVR-  144 (198)
T ss_pred             ----------HHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccc--cc----------------HHHHHHHHH-
Confidence                      77888888888887764  246789999999999966432  11                111111111 


Q ss_pred             HHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         287 YFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       287 ~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                              +...+.+++|||++|.||+++|+.+.+.++.+
T Consensus       145 --------~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~  176 (198)
T cd04142         145 --------KSWKCGYLECSAKYNWHILLLFKELLISATTR  176 (198)
T ss_pred             --------HhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence                    11346789999999999999999999888754

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01866 Rab2 Rab2 subfamily

Probab=99.59  E-value=9.2e-15  Score=126.16  Aligned_cols=116  Identities=17%  Similarity=0.212  Sum_probs=90.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..+..++++++++|||+|+++.          +++.....|+.++.... .+++|++|++||.|
T Consensus        52 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~D  120 (168)
T cd01866          52 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLTSWLEDARQHS-NSNMTIMLIGNKCD  120 (168)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCcEEEEEECcc
Confidence            46899999999999999999999999999999999986          67777777887776543 36789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++-    .              +.+.+..+..          ...+.++++||+++.||.++|.++.+.+++
T Consensus       121 l~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         121 LESRRE----V--------------SYEEGEAFAK----------EHGLIFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             cccccC----C--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            864321    0              1112221221          124678999999999999999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01864 Rab19 Rab19 subfamily

Probab=99.59  E-value=2e-14  Score=123.31  Aligned_cols=119  Identities=17%  Similarity=0.166  Sum_probs=87.8

Q ss_pred             EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.+++  ..+.+||++||+.++..|..++++++++|+|+|+++.          .++.+...|+..+.... ..++|++
T Consensus        44 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~p~i  112 (165)
T cd01864          44 TLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRR----------SSFESVPHWIEEVEKYG-ASNVVLL  112 (165)
T ss_pred             EEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHhHHHHHHHHHHhC-CCCCcEE
Confidence            344444  6789999999999999999999999999999999997          66666667777765532 3578999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +|+||+|+...+.    .              ..+.+..+.+        . .+...++++||+++.|++++|+++.+.
T Consensus       113 vv~nK~Dl~~~~~----~--------------~~~~~~~~~~--------~-~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         113 LIGNKCDLEEQRE----V--------------LFEEACTLAE--------K-NGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             EEEECcccccccc----c--------------CHHHHHHHHH--------H-cCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999865421    0              1111211111        1 123467899999999999999998764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PLN03108 Rab family protein; Provisional

Probab=99.58  E-value=3.5e-14  Score=127.67  Aligned_cols=117  Identities=16%  Similarity=0.211  Sum_probs=90.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++|++.++..|..++.+++++|+|+|+++.          .++.....|+..+.... ..+.|+++++||+|
T Consensus        54 ~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~----------~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~D  122 (210)
T PLN03108         54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLASWLEDARQHA-NANMTIMLIGNKCD  122 (210)
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECcc
Confidence            36789999999999999999999999999999999997          66766667777665432 35789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..++.    .              ..+.+.++..          ...+.++++||+++.||.++|.++.+.++++
T Consensus       123 l~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        123 LAHRRA----V--------------STEEGEQFAK----------EHGLIFMEASAKTAQNVEEAFIKTAAKIYKK  170 (210)
T ss_pred             CccccC----C--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            865431    1              1112222221          1346789999999999999999999998865

>KOG0395|consensus

Probab=99.58  E-value=1.8e-14  Score=128.54  Aligned_cols=143  Identities=18%  Similarity=0.137  Sum_probs=113.5

Q ss_pred             hCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         137 VNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       137 ~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.+.|.++|.||.+|..+.... +       .-....+.|+|++||+.+..+-..|..+++|.+.|+|+++.        
T Consensus        24 ~~~~f~~~y~ptied~y~k~~~-v-------~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~--------   87 (196)
T KOG0395|consen   24 LTGRFVEDYDPTIEDSYRKELT-V-------DGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDR--------   87 (196)
T ss_pred             cccccccccCCCccccceEEEE-E-------CCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCH--------
Confidence            3467889999999986443222 1       12345677999999999999999999999999999999998        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .+|++...+++.|...+....+|++|++||+||...|.    ++.              +++..+          +..
T Consensus        88 --~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----V~~--------------eeg~~l----------a~~  137 (196)
T KOG0395|consen   88 --SSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQ----VSE--------------EEGKAL----------ARS  137 (196)
T ss_pred             --HHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccc----cCH--------------HHHHHH----------HHh
Confidence              99999999999998878888899999999999988643    111              222111          112


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ..+.+++|||+...||.++|..+...+-.
T Consensus       138 ~~~~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  138 WGCAFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             cCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            45668999999999999999999998876

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.58  E-value=3e-14  Score=122.24  Aligned_cols=140  Identities=15%  Similarity=0.222  Sum_probs=94.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCccc-ccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRS-QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR  217 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~-~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~  217 (334)
                      +.|.+.|.||..+....        ...+..+.+.+++||++|+.. ....+..++++++++|+|+|+++.         
T Consensus        22 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~---------   84 (165)
T cd04146          22 KRFIGEYDPNLESLYSR--------QVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDR---------   84 (165)
T ss_pred             CccccccCCChHHhceE--------EEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCH---------
Confidence            45557788876433211        112222346789999999996 356688899999999999999997         


Q ss_pred             cccHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         218 TNRLHESRNIFDTIINNVI-FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       218 ~nrl~esl~lf~~i~~~~~-~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                       .+++....|+..+..... ..++|++|++||+|+..++.      +            ..+.+..+.+          .
T Consensus        85 -~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------v------------~~~~~~~~~~----------~  135 (165)
T cd04146          85 -SSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQ------V------------STEEGEKLAS----------E  135 (165)
T ss_pred             -HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc------c------------CHHHHHHHHH----------H
Confidence             666666666665554332 45789999999999854321      0            1111211111          1


Q ss_pred             CCeEEEEEeeecC-chHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDT-ENIKIVFNAVKNTIL  324 (334)
Q Consensus       297 ~~i~~~~tsA~d~-~nI~~vf~~v~~~I~  324 (334)
                      .+..++++||+++ .||.++|.++.+.+.
T Consensus       136 ~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         136 LGCLFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             cCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence            2356889999999 599999999988654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04155 Arl3 Arl3 subfamily

Probab=99.58  E-value=1.1e-14  Score=125.69  Aligned_cols=130  Identities=22%  Similarity=0.337  Sum_probs=99.5

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||.|++...+...+..+.+||++|++..+..|..++++++++++|+|.++.          .++.+...++..+.....
T Consensus        43 ~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~----------~~~~~~~~~~~~~~~~~~  112 (173)
T cd04155          43 TPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADK----------KRLEEAGAELVELLEEEK  112 (173)
T ss_pred             CCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhChh
Confidence            3567777677777889999999999999999999999999999999999986          677777778877776655


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..++|+++++||+|+....   ....+.+                     . .++.....+.+++..+||++++|++++|
T Consensus       113 ~~~~p~ivv~nK~D~~~~~---~~~~i~~---------------------~-l~~~~~~~~~~~~~~~Sa~~~~gi~~~~  167 (173)
T cd04155         113 LAGVPVLVFANKQDLATAA---PAEEIAE---------------------A-LNLHDLRDRTWHIQACSAKTGEGLQEGM  167 (173)
T ss_pred             hcCCCEEEEEECCCCccCC---CHHHHHH---------------------H-cCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence            5679999999999985431   1111111                     1 1222222355677899999999999999


Q ss_pred             HHHHH
Q psy3651         317 NAVKN  321 (334)
Q Consensus       317 ~~v~~  321 (334)
                      +|+.+
T Consensus       168 ~~l~~  172 (173)
T cd04155         168 NWVCK  172 (173)
T ss_pred             HHHhc
Confidence            99865

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01868 Rab11_like Rab11-like

Probab=99.57  E-value=3.3e-14  Score=121.66  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=86.0

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+++||++|++..+..|..++++++++|+|+|+++.          +++.+...|+..+.... ..+.|++|++||.|+
T Consensus        52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl  120 (165)
T cd01868          52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKK----------QTFENVERWLKELRDHA-DSNIVIMLVGNKSDL  120 (165)
T ss_pred             EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CCCCeEEEEEECccc
Confidence            6789999999999999999999999999999999986          66777677777765542 346899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ...+.  .                ..+....+..          ..++.++++||+++.||+++|+++.+.|
T Consensus       121 ~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         121 RHLRA--V----------------PTEEAKAFAE----------KNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             ccccc--C----------------CHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            65421  1                0111111111          1246789999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01863 Rab18 Rab18 subfamily

Probab=99.57  E-value=1.7e-14  Score=122.87  Aligned_cols=113  Identities=12%  Similarity=0.187  Sum_probs=88.2

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++|++.+...|..++++++++|+|+|+++.          .+++....|+..+.......+.|+++++||+|
T Consensus        48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D  117 (161)
T cd01863          48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRR----------DTFTNLETWLNELETYSTNNDIVKMLVGNKID  117 (161)
T ss_pred             EEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCH----------HHHHhHHHHHHHHHHhCCCCCCcEEEEEECCc
Confidence            46789999999999999999999999999999999987          67777777777776665557899999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +....+  ..                 +.+..+..          ...+.++++||+++.|+.++|+++.+.
T Consensus       118 ~~~~~~--~~-----------------~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         118 KENREV--TR-----------------EEGLKFAR----------KHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             cccccc--CH-----------------HHHHHHHH----------HcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            874322  11                 11111111          134678999999999999999988764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01892 Miro2 Miro2 subfamily

Probab=99.57  E-value=1.8e-14  Score=125.01  Aligned_cols=136  Identities=10%  Similarity=0.085  Sum_probs=93.0

Q ss_pred             CCCC-CCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcc
Q psy3651         139 SPLF-QDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED  215 (334)
Q Consensus       139 ~~f~-~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed  215 (334)
                      +.|. .+|.||..+-..         ...+.+++  ..+.+||+||++.++..|..||++++++|||+|+++.       
T Consensus        27 ~~f~~~~~~~T~~~~~~---------~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~-------   90 (169)
T cd01892          27 RSFSLNAYSPTIKPRYA---------VNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDP-------   90 (169)
T ss_pred             CCCCcccCCCccCcceE---------EEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCH-------
Confidence            5565 677777643221         11222333  6788999999999999999999999999999999986       


Q ss_pred             cccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651         216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE  295 (334)
Q Consensus       216 ~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~  295 (334)
                         .++.....+++.+..   ..++|+++++||+|+..++-   .. ..              .+.++ .++        
T Consensus        91 ---~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~---~~-~~--------------~~~~~-~~~--------  137 (169)
T cd01892          91 ---KSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQ---RY-EV--------------QPDEF-CRK--------  137 (169)
T ss_pred             ---HHHHHHHHHHHHhcc---CCCCeEEEEEEccccccccc---cc-cc--------------CHHHH-HHH--------
Confidence               566666666665422   24789999999999865421   10 00              00111 111        


Q ss_pred             CCCe-EEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         296 KKPL-FHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       296 ~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                       .++ .++++||+++.|+.++|+.+.+.++
T Consensus       138 -~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         138 -LGLPPPLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             -cCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence             111 2478999999999999999998775

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.57  E-value=4.7e-14  Score=120.24  Aligned_cols=115  Identities=17%  Similarity=0.259  Sum_probs=89.2

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .++++.+||++|++.++..|..++++++++|||+|+++.          .++..+..++..+..... .+.|+++++||+
T Consensus        48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~  116 (163)
T cd01860          48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSE----------ESFEKAKSWVKELQRNAS-PNIIIALVGNKA  116 (163)
T ss_pred             EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhCC-CCCeEEEEEECc
Confidence            457899999999999999999999999999999999987          677788888887766533 678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+...+-    .+              .+.+..+...          ..+.++++||+++.|+.++|+++.+.|
T Consensus       117 D~~~~~~----~~--------------~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         117 DLESKRQ----VS--------------TEEAQEYADE----------NGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             cccccCc----CC--------------HHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            9864321    11              1111111111          236789999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04118 Rab24 Rab24 subfamily

Probab=99.57  E-value=2.6e-14  Score=125.98  Aligned_cols=121  Identities=15%  Similarity=0.180  Sum_probs=88.8

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+.+||++|++.++..|..+|++++++|+|+|+++.          .++.+...|.+.+.+.  ..+.|++|++||.|+
T Consensus        50 ~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl  117 (193)
T cd04118          50 VTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDS----------SSFERAKFWVKELQNL--EEHCKIYLCGTKSDL  117 (193)
T ss_pred             EEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhc--CCCCCEEEEEEcccc
Confidence            6678999999999999999999999999999999997          6676666666666553  247899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      ....-  ....+            ..+.+.+|..          ...+.++++||+++.||.++|+++.+.+.+...
T Consensus       118 ~~~~~--~~~~v------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~  170 (193)
T cd04118         118 IEQDR--SLRQV------------DFHDVQDFAD----------EIKAQHFETSSKTGQNVDELFQKVAEDFVSRAN  170 (193)
T ss_pred             ccccc--ccCcc------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence            54210  00000            1112222211          123567899999999999999999999887543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04113 Rab4 Rab4 subfamily

Probab=99.56  E-value=3.3e-14  Score=121.18  Aligned_cols=114  Identities=18%  Similarity=0.196  Sum_probs=86.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+++||++||+.++..|.+++++++++|+|+|+++.          .++.....|+..+... ...++|++|++||.|
T Consensus        48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D  116 (161)
T cd04113          48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNR----------TSFEALPTWLSDARAL-ASPNIVVILVGNKSD  116 (161)
T ss_pred             EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-CCCCCeEEEEEEchh
Confidence            36789999999999999999999999999999999997          5666666666655432 236789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +..++.                  .+.+.+..+..          ...+.++++||+++.||.++|+++.+.+
T Consensus       117 ~~~~~~------------------~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         117 LADQRE------------------VTFLEASRFAQ----------ENGLLFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             cchhcc------------------CCHHHHHHHHH----------HcCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            865321                  01122221221          1236799999999999999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03110 Rab GTPase; Provisional

Probab=99.56  E-value=2e-14  Score=129.83  Aligned_cols=117  Identities=16%  Similarity=0.189  Sum_probs=89.1

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++||+.++..|..++++++++|+|+|+++.          ..+.....|+..+... ...+.|++|++||+|
T Consensus        60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~D  128 (216)
T PLN03110         60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR----------QTFDNVQRWLRELRDH-ADSNIVIMMAGNKSD  128 (216)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-CCCCCeEEEEEEChh
Confidence            37899999999999999999999999999999999987          5666666666665543 235789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +...+-    .              ..+.+..+.        .  ...+.+++|||+++.||.++|+++...|.+.
T Consensus       129 l~~~~~----~--------------~~~~~~~l~--------~--~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~  176 (216)
T PLN03110        129 LNHLRS----V--------------AEEDGQALA--------E--KEGLSFLETSALEATNVEKAFQTILLEIYHI  176 (216)
T ss_pred             cccccC----C--------------CHHHHHHHH--------H--HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            854321    0              011111111        1  1347799999999999999999999988764

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.56  E-value=4.4e-14  Score=120.24  Aligned_cols=111  Identities=13%  Similarity=0.208  Sum_probs=82.5

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+++++||++||+.++..|..|+++++++++|+|+++.          .++.....|...+..  ...+.|++|++||.|
T Consensus        50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~D  117 (162)
T cd04106          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDR----------ESFEAIESWKEKVEA--ECGDIPMVLVQTKID  117 (162)
T ss_pred             EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHH--hCCCCCEEEEEEChh
Confidence            47899999999999999999999999999999999997          555555555555433  235789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      +..+..    .              ..+.+..+..          ..+++++++||+++.|+.++|+++..
T Consensus       118 l~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         118 LLDQAV----I--------------TNEEAEALAK----------RLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             cccccC----C--------------CHHHHHHHHH----------HcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            865421    0              0111111111          12356889999999999999999875

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG0088|consensus

Probab=99.56  E-value=9.3e-15  Score=123.17  Aligned_cols=119  Identities=13%  Similarity=0.176  Sum_probs=92.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ....+.||||+||+++..+-+.||++.+++|+|+|++|.          .+|+....|..++-.-. -..+.+++|+||+
T Consensus        60 ~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr----------dSFqKVKnWV~Elr~ml-Gnei~l~IVGNKi  128 (218)
T KOG0088|consen   60 CRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR----------DSFQKVKNWVLELRTML-GNEIELLIVGNKI  128 (218)
T ss_pred             ceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccch----------HHHHHHHHHHHHHHHHh-CCeeEEEEecCcc
Confidence            346789999999999999999999999999999999998          67777777777765532 2457899999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ||.+++-    +.              .++|..|.+.          -...+.+|||+++.+|.++|..+...+++..
T Consensus       129 DLEeeR~----Vt--------------~qeAe~YAes----------vGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  129 DLEEERQ----VT--------------RQEAEAYAES----------VGALYMETSAKDNVGISELFESLTAKMIEHS  178 (218)
T ss_pred             cHHHhhh----hh--------------HHHHHHHHHh----------hchhheecccccccCHHHHHHHHHHHHHHHh
Confidence            9988753    11              1223223221          2344789999999999999999998888654

>cd01862 Rab7 Rab7 subfamily

Probab=99.56  E-value=1e-13  Score=119.08  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=88.1

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEEe
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFLN  247 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~lN  247 (334)
                      .+.+++||++|++.+...|..++++++++|+|+|+++.          .++.+...|+..+...-   ...++|+++++|
T Consensus        48 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n  117 (172)
T cd01862          48 LVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP----------KSFESLDSWRDEFLIQASPSDPENFPFVVLGN  117 (172)
T ss_pred             EEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCccCCCCceEEEEEE
Confidence            36788999999999999999999999999999999986          55666656666554432   134789999999


Q ss_pred             CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+|+..++.  .                ..+....+...         ...+.++++||+++.|+.++|+++.+.++++
T Consensus       118 K~Dl~~~~~--~----------------~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         118 KIDLEEKRQ--V----------------STKKAQQWCQS---------NGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             Ccccccccc--c----------------CHHHHHHHHHH---------cCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            999974221  0                01111111111         1236789999999999999999999988876

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.56  E-value=8.2e-14  Score=120.39  Aligned_cols=150  Identities=17%  Similarity=0.213  Sum_probs=94.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+....        ...+.-+.+.+.+||++||+.++..|..++.+++++++|+|+++.          
T Consensus        24 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~----------   85 (175)
T cd01870          24 DQFPEVYVPTVFENYVA--------DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------   85 (175)
T ss_pred             CCCCCCCCCccccceEE--------EEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH----------
Confidence            45666788876543211        111222346789999999999999999999999999999999986          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++......|...+.. ...+.|++|++||.|+..+..  ....+..    ........+.+.++..+         .+.
T Consensus        86 ~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~--~~~~i~~----~~~~~v~~~~~~~~~~~---------~~~  149 (175)
T cd01870          86 DSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEH--TRRELAK----MKQEPVKPEEGRDMANK---------IGA  149 (175)
T ss_pred             HHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChh--hhhhhhh----ccCCCccHHHHHHHHHH---------cCC
Confidence            4555544433333332 235789999999999865321  1111111    00111112222212111         123


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ..+++|||+++.||+++|+++.+.
T Consensus       150 ~~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         150 FGYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             cEEEEeccccCcCHHHHHHHHHHH
Confidence            468899999999999999998864

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04123 Rab21 Rab21 subfamily

Probab=99.56  E-value=2.1e-14  Score=121.62  Aligned_cols=114  Identities=14%  Similarity=0.191  Sum_probs=84.6

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|+..++..|..++.+++++|+|+|+++.          +++.+...+++.+..... .+.|+++++||+|
T Consensus        48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D  116 (162)
T cd04123          48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDA----------DSFQKVKKWIKELKQMRG-NNISLVIVGNKID  116 (162)
T ss_pred             EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CCCeEEEEEECcc
Confidence            46789999999999999999999999999999999997          566666666666654322 3789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +...+-    ..              .+...++..          ...+.++++||+++.|+.++|+++.+.+
T Consensus       117 ~~~~~~----~~--------------~~~~~~~~~----------~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         117 LERQRV----VS--------------KSEAEEYAK----------SVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             cccccC----CC--------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            874321    00              011111111          1235678999999999999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.55  E-value=3e-14  Score=121.73  Aligned_cols=113  Identities=14%  Similarity=0.197  Sum_probs=84.5

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|.+++++++++|||+|+++.          .++.+...|++.+....  .+.|++|++||.|
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~D  118 (164)
T cd04101          51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNK----------ASFENCSRWVNKVRTAS--KHMPGVLVGNKMD  118 (164)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence            37789999999999999999999999999999999986          56666666666665532  5689999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +..+.-      +.            ...+..+.          ....+.++.+||+++.||.++|+++.+.+
T Consensus       119 l~~~~~------~~------------~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         119 LADKAE------VT------------DAQAQAFA----------QANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             cccccC------CC------------HHHHHHHH----------HHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            854321      10            00111110          01235688999999999999999998765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.54  E-value=4.7e-14  Score=119.89  Aligned_cols=141  Identities=17%  Similarity=0.196  Sum_probs=100.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.++|.||..|.....        ..+..+.+.+.+||++||..+...|..++++++++++|+|+++.          
T Consensus        23 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------   84 (164)
T cd04139          23 DEFVEDYEPTKADSYRKK--------VVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDM----------   84 (164)
T ss_pred             CCCccccCCcchhhEEEE--------EEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCH----------
Confidence            455567888765543211        11222447789999999999999999999999999999999986          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++.....++..+.......+.|+++++||+|+..++.    .+.              +....+..          ...
T Consensus        85 ~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----~~~--------------~~~~~~~~----------~~~  136 (164)
T cd04139          85 ESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----VSS--------------EEAANLAR----------QWG  136 (164)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccc----cCH--------------HHHHHHHH----------HhC
Confidence            56777777777777654456799999999999866321    011              11111111          123


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +.++++||+++.|+.++|+++.+.+.+
T Consensus       137 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  163 (164)
T cd04139         137 VPYVETSAKTRQNVEKAFYDLVREIRQ  163 (164)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            568999999999999999999887653

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>KOG0097|consensus

Probab=99.53  E-value=2.2e-14  Score=118.80  Aligned_cols=130  Identities=18%  Similarity=0.163  Sum_probs=96.8

Q ss_pred             eecceeEE--EEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         158 ATKGITEF--TIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       158 ~T~Gi~~~--~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      -|+|+...  -+++  ..++++|||++||+++|....+||+++.+.+.|+|++...       +.|.+..++.--.++  
T Consensus        42 htigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrs-------tynhlsswl~dar~l--  112 (215)
T KOG0097|consen   42 HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS-------TYNHLSSWLTDARNL--  112 (215)
T ss_pred             cccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhh-------hhhhHHHHHhhhhcc--
Confidence            35666522  2333  4589999999999999999999999999999999999862       225554444433333  


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                        ..+++.|+|++||.||..++-                  ..+++|+.|..          ...+.+.++||++|+||+
T Consensus       113 --tnpnt~i~lignkadle~qrd------------------v~yeeak~fae----------engl~fle~saktg~nve  162 (215)
T KOG0097|consen  113 --TNPNTVIFLIGNKADLESQRD------------------VTYEEAKEFAE----------ENGLMFLEASAKTGQNVE  162 (215)
T ss_pred             --CCCceEEEEecchhhhhhccc------------------CcHHHHHHHHh----------hcCeEEEEecccccCcHH
Confidence              336789999999999977642                  23555554433          246778999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         314 IVFNAVKNTILHR  326 (334)
Q Consensus       314 ~vf~~v~~~I~~~  326 (334)
                      +.|-...+.|.++
T Consensus       163 dafle~akkiyqn  175 (215)
T KOG0097|consen  163 DAFLETAKKIYQN  175 (215)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988875

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.53  E-value=1.1e-13  Score=123.09  Aligned_cols=140  Identities=14%  Similarity=0.138  Sum_probs=99.6

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      ++|.+.|.||..+.          ....+.+++  +++++||++|+..++..|..++.+++++|||+|+++.        
T Consensus        22 ~~~~~~~~~t~~~~----------~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~--------   83 (198)
T cd04147          22 DTFEPKYRRTVEEM----------HRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDP--------   83 (198)
T ss_pred             CCCCccCCCchhhh----------eeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCH--------
Confidence            44556677765432          112233333  6789999999999999999999999999999999986        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        ..+.+...++..+.......++|++|++||+|+...+   ..  +.            .+.+.    +++ ..    .
T Consensus        84 --~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---~~--v~------------~~~~~----~~~-~~----~  135 (198)
T cd04147          84 --ESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE---RQ--VP------------AKDAL----STV-EL----D  135 (198)
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc---cc--cc------------HHHHH----HHH-Hh----h
Confidence              6777787888888776555679999999999986521   11  10            01111    110 00    1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ..+.++++||+++.||.++|+++.+.+.
T Consensus       136 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         136 WNCGFVETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             cCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            2345788999999999999999998765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.53  E-value=1.7e-13  Score=116.50  Aligned_cols=115  Identities=18%  Similarity=0.238  Sum_probs=88.2

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+.+||++|+..+...|..++++++++|+|+|+++.          .++++...|+..+..... .+.|+++++||+|+
T Consensus        49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~  117 (164)
T smart00175       49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNR----------ESFENLKNWLKELREYAD-PNVVIMLVGNKSDL  117 (164)
T ss_pred             EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhc
Confidence            6789999999999999999999999999999999987          677777776666655432 57899999999997


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      .....    .              +.+.+.++..          ...+.++++||+++.|+.++|+++.+.+.+
T Consensus       118 ~~~~~----~--------------~~~~~~~~~~----------~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      118 EDQRQ----V--------------SREEAEAFAE----------EHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             ccccC----C--------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            54211    0              1122222221          123568999999999999999999988764

Rab GTPases are implicated in vesicle trafficking.

>PLN03118 Rab family protein; Provisional

Probab=99.53  E-value=1.6e-13  Score=123.23  Aligned_cols=118  Identities=13%  Similarity=0.163  Sum_probs=88.2

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~~~~piiL~lNK~  249 (334)
                      .+.+.+||++||+.++..|..++++++++|+|+|+++.          .++.+...+|...+.. ....+.|++|++||+
T Consensus        61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~----------~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~  130 (211)
T PLN03118         61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR----------ETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV  130 (211)
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            36789999999999999999999999999999999997          5666666666555542 223567999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..++.      +.            .+.+..+..          ...+.++++||+++.||+++|+++.+.+...
T Consensus       131 Dl~~~~~------i~------------~~~~~~~~~----------~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~  179 (211)
T PLN03118        131 DRESERD------VS------------REEGMALAK----------EHGCLFLECSAKTRENVEQCFEELALKIMEV  179 (211)
T ss_pred             cccccCc------cC------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence            9865421      10            111111111          1346689999999999999999999988754

>cd01861 Rab6 Rab6 subfamily

Probab=99.53  E-value=5.6e-14  Score=119.49  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=86.4

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+++||++|+..++..|..++++++++|+|+|+++.          +++.+...++..+.... ..+.|++|++||.|+
T Consensus        49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~  117 (161)
T cd01861          49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR----------QSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDL  117 (161)
T ss_pred             EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhc
Confidence            6789999999999999999999999999999999997          77888888888776543 237899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ...+.    ....              .+..+..          ...+.++++||+++.|++++|+++.+.
T Consensus       118 ~~~~~----~~~~--------------~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         118 SDKRQ----VSTE--------------EGEKKAK----------ELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             cccCc----cCHH--------------HHHHHHH----------HhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            54321    1111              1111111          123678999999999999999999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.49  E-value=2.1e-13  Score=118.65  Aligned_cols=120  Identities=17%  Similarity=0.170  Sum_probs=94.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+++||++|++.++..|..++.+++++|+|+|+++.          ..+++...++..+.+.....+.|++|++||+|
T Consensus        48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D  117 (180)
T cd04137          48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSR----------KSFEVVKVIYDKILDMLGKESVPIVLVGNKSD  117 (180)
T ss_pred             EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEEchh
Confidence            35678999999999999999999999999999999997          78888999999998876556789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      +...+.    .+.              +....+. +         ....+++.+||+++.|+.++|.++.+.+.+...
T Consensus       118 l~~~~~----~~~--------------~~~~~~~-~---------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  167 (180)
T cd04137         118 LHTQRQ----VST--------------EEGKELA-E---------SWGAAFLESSARENENVEEAFELLIEEIEKVEN  167 (180)
T ss_pred             hhhcCc----cCH--------------HHHHHHH-H---------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            854321    000              0111011 0         123568899999999999999999998876644

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0393|consensus

Probab=99.48  E-value=3.4e-13  Score=119.24  Aligned_cols=154  Identities=16%  Similarity=0.185  Sum_probs=105.1

Q ss_pred             CCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651         138 NSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR  217 (334)
Q Consensus       138 ~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~  217 (334)
                      .+.|..+|+||.-|-..+.   +-+.    +-+.+.+.+|||+||+.+.+.|+..|.++|.+|.|+++++.         
T Consensus        26 ~~~fp~~yvPTVFdnys~~---v~V~----dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p---------   89 (198)
T KOG0393|consen   26 TNAFPEEYVPTVFDNYSAN---VTVD----DGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSP---------   89 (198)
T ss_pred             cCcCcccccCeEEccceEE---EEec----CCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCCh---------
Confidence            3578899999987653332   1111    12346789999999999999999999999999999999998         


Q ss_pred             cccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         218 TNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       218 ~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                       .++++.. +|+-++..+  .+++|+||+|+|.||-...-  ....+...    ...+...+.+.        .+.+. -
T Consensus        90 -~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~--~~~~l~~~----~~~~Vt~~~g~--------~lA~~-i  151 (198)
T KOG0393|consen   90 -ESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPS--TLEKLQRQ----GLEPVTYEQGL--------ELAKE-I  151 (198)
T ss_pred             -hhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHH--HHHHHHhc----cCCcccHHHHH--------HHHHH-h
Confidence             7787754 455555443  38899999999999974321  11112111    11122233321        11111 1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ....++++||+...|++++|+......+.
T Consensus       152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~  180 (198)
T KOG0393|consen  152 GAVKYLECSALTQKGVKEVFDEAIRAALR  180 (198)
T ss_pred             CcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence            33668999999999999999988887765

>cd00157 Rho Rho (Ras homology) family

Probab=99.48  E-value=8.7e-13  Score=113.10  Aligned_cols=148  Identities=18%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.+...|.||..+......        .+....+.+++||++||..+...+..+++.++++++|+|+++.          
T Consensus        23 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------   84 (171)
T cd00157          23 GKFPTEYVPTVFDNYSATV--------TVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSP----------   84 (171)
T ss_pred             CCCCCCCCCceeeeeEEEE--------EECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCH----------
Confidence            4455677887654322211        1112346789999999998888888889999999999999986          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++.+....|...+... ..+.|+++++||+|+....-  ....+     .+....-..+.+.++...         ...
T Consensus        85 ~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~--~~~~~-----~~~~~~v~~~~~~~~~~~---------~~~  147 (171)
T cd00157          85 SSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDEN--TLKKL-----EKGKEPITPEEGEKLAKE---------IGA  147 (171)
T ss_pred             HHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchh--hhhhc-----ccCCCccCHHHHHHHHHH---------hCC
Confidence            56666665444443332 24799999999999876432  11111     011111112222222111         122


Q ss_pred             eEEEEEeeecCchHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      ..++++||+++.|+.++|+++.+
T Consensus       148 ~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         148 IGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             eEEEEeecCCCCCHHHHHHHHhh
Confidence            37899999999999999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04148 RGK RGK subfamily

Probab=99.48  E-value=2.7e-13  Score=123.01  Aligned_cols=116  Identities=15%  Similarity=0.108  Sum_probs=84.4

Q ss_pred             eCcceeeeecCCccccccccccccc-CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFD-SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~-~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ....+.+||++||+  ......|+. +++++|+|+|+++.          .++.....++..+.+.....+.|+|||+||
T Consensus        48 ~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~----------~S~~~~~~~~~~l~~~~~~~~~piilV~NK  115 (221)
T cd04148          48 EESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDR----------SSFERASELRIQLRRNRQLEDRPIILVGNK  115 (221)
T ss_pred             EEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            45778999999998  223345666 99999999999997          667777777777766544568999999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +|+..++.    ...              +.+..+.          ....+.+++|||+++.||.++|+++.+.+..
T Consensus       116 ~Dl~~~~~----v~~--------------~~~~~~a----------~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         116 SDLARSRE----VSV--------------QEGRACA----------VVFDCKFIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             hhccccce----ecH--------------HHHHHHH----------HHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            99865321    111              1111111          0123568899999999999999999998863

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04114 Rab30 Rab30 subfamily

Probab=99.46  E-value=5.2e-13  Score=114.58  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.+.+  +.+.+||++|++.++..|..++..++++|+|+|+++.          .++.....|+..+... .-.+.|++
T Consensus        48 ~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~~~i  116 (169)
T cd04114          48 TVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE----------ESFRCLPEWLREIEQY-ANNKVITI  116 (169)
T ss_pred             EEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-CCCCCeEE
Confidence            344444  6788999999999999999999999999999999986          4454444444443221 22468999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +++||+|+...+-  -...                     +.+.|...     ....++++||+++.|++++|+++.+.+
T Consensus       117 ~v~NK~D~~~~~~--i~~~---------------------~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         117 LVGNKIDLAERRE--VSQQ---------------------RAEEFSDA-----QDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             EEEECcccccccc--cCHH---------------------HHHHHHHH-----cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            9999999864321  0001                     11112211     235688999999999999999998765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00876 Ras Ras family

Probab=99.46  E-value=5.9e-13  Score=112.47  Aligned_cols=136  Identities=19%  Similarity=0.197  Sum_probs=98.9

Q ss_pred             CCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651         140 PLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR  217 (334)
Q Consensus       140 ~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~  217 (334)
                      .+...|.||..+..          ...+...  ...+++||++|+......|..++++++++|+|+|+++.         
T Consensus        23 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---------   83 (160)
T cd00876          23 TFVEEYDPTIEDSY----------RKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR---------   83 (160)
T ss_pred             CCCcCcCCChhHeE----------EEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH---------
Confidence            35567777765321          1122232  46789999999999999999999999999999999997         


Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       218 ~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                       ..+.+...++..+.+.......|+++++||+|+...+-    .              +.+.+..+..+          .
T Consensus        84 -~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~--------------~~~~~~~~~~~----------~  134 (160)
T cd00876          84 -ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQ----V--------------SKEEGKALAKE----------W  134 (160)
T ss_pred             -HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccce----e--------------cHHHHHHHHHH----------c
Confidence             67778888888887764446799999999999876321    0              11222222221          1


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ..+++.+||+++.||+++|+++.+.|
T Consensus       135 ~~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         135 GCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             CCcEEEeccCCCCCHHHHHHHHHhhC
Confidence            25688999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.45  E-value=7.9e-13  Score=118.96  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=88.9

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +++.+.+||++|++.++..|..|+.+++++|+|+|+++.          .++.+...|+..+...  ..+.|+++++||+
T Consensus        56 ~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~  123 (215)
T PTZ00132         56 GPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR----------ITYKNVPNWHRDIVRV--CENIPIVLVGNKV  123 (215)
T ss_pred             eEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECc
Confidence            458899999999999999999999999999999999987          6666666777666543  3678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+....+  ...                 . ..+     ..     ...+.++++||+++.|++++|.++...++.+
T Consensus       124 Dl~~~~~--~~~-----------------~-~~~-----~~-----~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~  170 (215)
T PTZ00132        124 DVKDRQV--KAR-----------------Q-ITF-----HR-----KKNLQYYDISAKSNYNFEKPFLWLARRLTND  170 (215)
T ss_pred             cCccccC--CHH-----------------H-HHH-----HH-----HcCCEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence            9854322  110                 0 001     11     1346788999999999999999999988753

>cd01893 Miro1 Miro1 subfamily

Probab=99.44  E-value=5.9e-13  Score=114.62  Aligned_cols=121  Identities=20%  Similarity=0.207  Sum_probs=85.4

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .++++.+||++|+..++..|..++.+++++++|+|+++.          .++.+....|...+.... .+.|++|++||+
T Consensus        45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~  113 (166)
T cd01893          45 ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRP----------STLERIRTKWLPLIRRLG-VKVPIILVGNKS  113 (166)
T ss_pred             CeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhC-CCCCEEEEEEch
Confidence            457899999999999889999999999999999999986          566655443433333222 478999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+...+.  .. .+.              .....+.++|..       ...+++|||+++.|++++|..+.+.+++
T Consensus       114 Dl~~~~~--~~-~~~--------------~~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         114 DLRDGSS--QA-GLE--------------EEMLPIMNEFRE-------IETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             hcccccc--hh-HHH--------------HHHHHHHHHHhc-------ccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            9966432  10 011              111122222211       1257899999999999999999888764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00154 Rab Rab family

Probab=99.44  E-value=7.6e-13  Score=110.83  Aligned_cols=111  Identities=18%  Similarity=0.257  Sum_probs=84.2

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ....+.+||++|++.++..|..++.+++++|+|+|+++.          ..+.+...++..+.... ..+.|+++++||+
T Consensus        47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  115 (159)
T cd00154          47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNR----------ESFENLDKWLKELKEYA-PENIPIILVGNKI  115 (159)
T ss_pred             EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhC-CCCCcEEEEEEcc
Confidence            357889999999999999999999999999999999986          56666667676666542 2568999999999


Q ss_pred             Ccchhh-hccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         250 DLLAEK-LRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       250 Dl~~ek-i~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      |+...+ .  .                 .+.+.++..          ...+.++++||+++.+|.++|+++.
T Consensus       116 D~~~~~~~--~-----------------~~~~~~~~~----------~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         116 DLEDQRQV--S-----------------TEEAQQFAK----------ENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cccccccc--c-----------------HHHHHHHHH----------HcCCeEEEEecCCCCCHHHHHHHHh
Confidence            986221 1  1                 111111111          1346789999999999999999875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04129 Rho2 Rho2 subfamily

Probab=99.42  E-value=2.9e-12  Score=112.78  Aligned_cols=130  Identities=18%  Similarity=0.125  Sum_probs=86.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN-IFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+.+||++||+.++..+..++++++++|+|+|+++.          ..+.+... |...+.+.  ..++|++|++||.
T Consensus        48 ~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~----------~s~~~~~~~~~~~i~~~--~~~~piilvgnK~  115 (187)
T cd04129          48 PVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTP----------DSLENVRTKWIEEVRRY--CPNVPVILVGLKK  115 (187)
T ss_pred             EEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEeeCh
Confidence            35688999999998888887888999999999999986          55666554 44444332  3569999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhh
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR  329 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~  329 (334)
                      |+..+..  ...   ..-   .....+.+.+..+.+ .        -....+++|||+++.||+++|+++.+.++...-+
T Consensus       116 Dl~~~~~--~~~---~~~---~~~~~~~~~~~~~~~-~--------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         116 DLRQDAV--AKE---EYR---TQRFVPIQQGKRVAK-E--------IGAKKYMECSALTGEGVDDVFEAATRAALLVRKS  178 (187)
T ss_pred             hhhhCcc--ccc---ccc---cCCcCCHHHHHHHHH-H--------hCCcEEEEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence            9854322  110   000   000011222221111 1        1224689999999999999999999887754433

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.37  E-value=2.1e-12  Score=115.82  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=63.2

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---------------
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---------------  235 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---------------  235 (334)
                      .+.+++||++||+.++..|..||++++++|+|+|+++.          .+++....|+.++.+..               
T Consensus        53 ~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~----------~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~  122 (202)
T cd04102          53 TFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNR----------KSSQNLQRWSLEALNKDTFPTGLLVTNGDYDS  122 (202)
T ss_pred             EEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcCh----------HHHHHHHHHHHHHHHhhccccccccccccccc
Confidence            36789999999999999999999999999999999998          67777777777776531               


Q ss_pred             ---CCCCCcEEEEEeCCCcchhh
Q psy3651         236 ---IFRNVSFILFLNKTDLLAEK  255 (334)
Q Consensus       236 ---~~~~~piiL~lNK~Dl~~ek  255 (334)
                         ...++|++|++||.|+..++
T Consensus       123 ~~~~~~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102         123 EQFGGNQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             cccCCCCceEEEEEECccchhhc
Confidence               12468999999999997764

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04171 SelB SelB subfamily

Probab=99.37  E-value=5.4e-12  Score=107.11  Aligned_cols=126  Identities=15%  Similarity=0.160  Sum_probs=81.1

Q ss_pred             ecceeEEEEEee-CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         159 TKGITEFTIVIS-NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       159 T~Gi~~~~~~~~-~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      |+++....+.+. +..+++|||+||+.++..+..++.+++++|+|+|+++-           ...++...+..+ ..  .
T Consensus        37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~-----------~~~~~~~~~~~~-~~--~  102 (164)
T cd04171          37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEG-----------IMPQTREHLEIL-EL--L  102 (164)
T ss_pred             eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCC-----------ccHhHHHHHHHH-HH--h
Confidence            444444455555 78999999999999887778889999999999999862           223333332221 11  1


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      ...|++|++||+|+..+.-      +.              ...+.+.+.+...   ......++.+||+++.|++++|+
T Consensus       103 ~~~~~ilv~NK~Dl~~~~~------~~--------------~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l~~  159 (164)
T cd04171         103 GIKRGLVVLTKADLVDEDW------LE--------------LVEEEIRELLAGT---FLADAPIFPVSAVTGEGIEELKE  159 (164)
T ss_pred             CCCcEEEEEECccccCHHH------HH--------------HHHHHHHHHHHhc---CcCCCcEEEEeCCCCcCHHHHHH
Confidence            2248999999999865410      00              0001112222111   01346789999999999999998


Q ss_pred             HHHH
Q psy3651         318 AVKN  321 (334)
Q Consensus       318 ~v~~  321 (334)
                      .+..
T Consensus       160 ~l~~  163 (164)
T cd04171         160 YLDE  163 (164)
T ss_pred             HHhh
Confidence            8753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01890 LepA LepA subfamily

Probab=99.36  E-value=2.5e-12  Score=111.49  Aligned_cols=112  Identities=14%  Similarity=0.189  Sum_probs=77.2

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +++.+++|||+|++.++..|..++++++++|+|+|+++..          . .+.+..+.....    .+.|+++++||+
T Consensus        65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~----------~-~~~~~~~~~~~~----~~~~iiiv~NK~  129 (179)
T cd01890          65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGV----------E-AQTLANFYLALE----NNLEIIPVINKI  129 (179)
T ss_pred             CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCc----------c-HhhHHHHHHHHH----cCCCEEEEEECC
Confidence            4577899999999999999999999999999999998741          1 122333333332    467999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+.....   . ..                 .+-+.+. .++     ....++.+||+++.||+++|+++.+.+
T Consensus       130 Dl~~~~~---~-~~-----------------~~~~~~~-~~~-----~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         130 DLPSADP---E-RV-----------------KQQIEDV-LGL-----DPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             CCCcCCH---H-HH-----------------HHHHHHH-hCC-----CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            9854211   0 00                 0011111 111     112478999999999999999998754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0077|consensus

Probab=99.34  E-value=3.5e-13  Score=114.58  Aligned_cols=138  Identities=22%  Similarity=0.366  Sum_probs=105.7

Q ss_pred             ceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651         161 GITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV  240 (334)
Q Consensus       161 Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~  240 (334)
                      ..+...+.+.+++++.+|.||+..-|+.|..||-.|++|+|.||..+.          .|+.||...++.+++.....+.
T Consensus        53 HPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~----------er~~es~~eld~ll~~e~la~v  122 (193)
T KOG0077|consen   53 HPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQ----------ERFAESKKELDALLSDESLATV  122 (193)
T ss_pred             CCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhH----------HHhHHHHHHHHHHHhHHHHhcC
Confidence            334456778899999999999999999999999999999999999998          9999999999999999989999


Q ss_pred             cEEEEEeCCCcchhhhccccchhhhhCC--CCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHH
Q psy3651         241 SFILFLNKTDLLAEKLRTSKTSIAEHFP--EFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNA  318 (334)
Q Consensus       241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp--~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~  318 (334)
                      |+++.+||+|.... +  ...++.-.+-  .+.|....            .++.....+++..+.+|...+.+--+.|.|
T Consensus       123 p~lilgnKId~p~a-~--se~~l~~~l~l~~~t~~~~~------------v~~~~~~~rp~evfmcsi~~~~gy~e~fkw  187 (193)
T KOG0077|consen  123 PFLILGNKIDIPYA-A--SEDELRFHLGLSNFTTGKGK------------VNLTDSNVRPLEVFMCSIVRKMGYGEGFKW  187 (193)
T ss_pred             cceeecccccCCCc-c--cHHHHHHHHHHHHHhccccc------------ccccCCCCCeEEEEEEEEEccCccceeeee
Confidence            99999999998765 2  2222322110  11111000            011112237788999999999998899988


Q ss_pred             HHHHH
Q psy3651         319 VKNTI  323 (334)
Q Consensus       319 v~~~I  323 (334)
                      +...|
T Consensus       188 l~qyi  192 (193)
T KOG0077|consen  188 LSQYI  192 (193)
T ss_pred             hhhhc
Confidence            87654

>PLN00023 GTP-binding protein; Provisional

Probab=99.33  E-value=4e-12  Score=120.79  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=61.5

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC-----------CCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI-----------FRN  239 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~-----------~~~  239 (334)
                      .+.++|||++||+.++..|..||++++++|+|+|+++.          ..+.....|++.+.....           ..+
T Consensus        82 ~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr----------~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~  151 (334)
T PLN00023         82 DFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQR----------RTKTSLQKWASEVAATGTFSAPLGSGGPGGLP  151 (334)
T ss_pred             eEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence            36799999999999999999999999999999999997          566666677777765421           235


Q ss_pred             CcEEEEEeCCCcchh
Q psy3651         240 VSFILFLNKTDLLAE  254 (334)
Q Consensus       240 ~piiL~lNK~Dl~~e  254 (334)
                      +|++||+||+||..+
T Consensus       152 ipIILVGNK~DL~~~  166 (334)
T PLN00023        152 VPYIVIGNKADIAPK  166 (334)
T ss_pred             CcEEEEEECcccccc
Confidence            899999999999653

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.33  E-value=9.7e-12  Score=106.51  Aligned_cols=126  Identities=23%  Similarity=0.187  Sum_probs=82.8

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccc----------cccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQ----------CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~----------~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      +|.++....+..++.++++|||+|+.. +..|..          ....++++|+|+|.++...        .++.+...+
T Consensus        33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~--------~~~~~~~~~  103 (168)
T cd01897          33 TTKSLFVGHFDYKYLRWQVIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG--------YSLEEQLSL  103 (168)
T ss_pred             cccceeEEEEccCceEEEEEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc--------cchHHHHHH
Confidence            355566666666778999999999852 222211          1123689999999998521        134555566


Q ss_pred             HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee
Q psy3651         228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV  307 (334)
Q Consensus       228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~  307 (334)
                      +..+...  +.+.|++|++||+|+....-   ....                      +.+.     ....+.+++|||+
T Consensus       104 ~~~l~~~--~~~~pvilv~NK~Dl~~~~~---~~~~----------------------~~~~-----~~~~~~~~~~Sa~  151 (168)
T cd01897         104 FEEIKPL--FKNKPVIVVLNKIDLLTFED---LSEI----------------------EEEE-----ELEGEEVLKISTL  151 (168)
T ss_pred             HHHHHhh--cCcCCeEEEEEccccCchhh---HHHH----------------------HHhh-----hhccCceEEEEec
Confidence            6666432  35789999999999865321   0001                      1111     1134668999999


Q ss_pred             cCchHHHHHHHHHHHHH
Q psy3651         308 DTENIKIVFNAVKNTIL  324 (334)
Q Consensus       308 d~~nI~~vf~~v~~~I~  324 (334)
                      ++.|++++|+++.+.++
T Consensus       152 ~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         152 TEEGVDEVKNKACELLL  168 (168)
T ss_pred             ccCCHHHHHHHHHHHhC
Confidence            99999999999988763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.32  E-value=1.1e-11  Score=111.09  Aligned_cols=133  Identities=22%  Similarity=0.235  Sum_probs=93.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+++.+|||+||+.++..|..|+.+++++++|+|.++.          .++.+....|.+.+......+.|+++++||+|
T Consensus        53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~----------~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~D  122 (219)
T COG1100          53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLR----------ESSDELTEEWLEELRELAPDDVPILLVGNKID  122 (219)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccc----------hhhhHHHHHHHHHHHHhCCCCceEEEEecccc
Confidence            56799999999999999999999999999999999997          77888877777666554335789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee--cCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV--DTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~--d~~nI~~vf~~v~~~I~~~  326 (334)
                      ++.+..  ....+...+.    ....      +................ ++.+||+  .+.+|..+|..+...+.+.
T Consensus       123 l~~~~~--~~~~~~~~~~----~~~~------~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         123 LFDEQS--SSEEILNQLN----REVV------LLVLAPKAVLPEVANPA-LLETSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             cccchh--HHHHHHhhhh----cCcc------hhhhHhHHhhhhhcccc-eeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence            988753  2222221110    0000      11111011111111223 7899999  9999999999999888653

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.29  E-value=5.5e-11  Score=101.59  Aligned_cols=115  Identities=16%  Similarity=0.087  Sum_probs=78.1

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+|||+|+..++..|..++..++++++|+|.++.+           ..+....+..+..    .+.|+++++||+|
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-----------~~~~~~~~~~~~~----~~~p~ivv~NK~D  113 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGV-----------MPQTIEAIKLAKA----ANVPFIVALNKID  113 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-----------cHHHHHHHHHHHH----cCCCEEEEEEcee
Confidence            688999999999999999999999999999999999852           1222223322222    4679999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhc-cCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVK-RDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~-~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +..+..    ..+..                 -+. .+.... ......+.++.+||+++.||.++|+++.+.
T Consensus       114 l~~~~~----~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T cd01887         114 KPNANP----ERVKN-----------------ELS-ELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL  164 (168)
T ss_pred             cccccH----HHHHH-----------------HHH-HhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence            864311    01110                 000 101000 011234678999999999999999998764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG4252|consensus

Probab=99.29  E-value=2.5e-12  Score=110.68  Aligned_cols=144  Identities=14%  Similarity=0.223  Sum_probs=110.2

Q ss_pred             hHHHHHhhhCCCCCCCCCCCcccccceeeeeccee--EE--EEEeeCcceeeeecCCcccccccccccccCCCeEEEEEe
Q psy3651         129 NWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT--EF--TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVS  204 (334)
Q Consensus       129 ~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~--~~--~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~d  204 (334)
                      -+.|+|.   |.|..+|.-           |+|++  +.  .+...++.+.+||+|||+.+......||+++.+.++|++
T Consensus        36 miqryCk---gifTkdykk-----------tIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFS  101 (246)
T KOG4252|consen   36 MIQRYCK---GIFTKDYKK-----------TIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFS  101 (246)
T ss_pred             HHHHHhc---ccccccccc-----------ccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEe
Confidence            4677776   777788876           45555  22  233356889999999999999999999999999999999


Q ss_pred             CCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651         205 SSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL  284 (334)
Q Consensus       205 ls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi  284 (334)
                      -+|.          .+++..+.|++.+.+.  ...+|.+++-||+||.+...  -.                .+++.   
T Consensus       102 TTDr----------~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~--~~----------------~~evE---  148 (246)
T KOG4252|consen  102 TTDR----------YSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQ--MD----------------KGEVE---  148 (246)
T ss_pred             cccH----------HHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhh--cc----------------hHHHH---
Confidence            9998          8899999999998775  47899999999999987632  11                11111   


Q ss_pred             HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                           .+.+.  ....++.||++..-||..+|..+.+...+.
T Consensus       149 -----~lak~--l~~RlyRtSvked~NV~~vF~YLaeK~~q~  183 (246)
T KOG4252|consen  149 -----GLAKK--LHKRLYRTSVKEDFNVMHVFAYLAEKLTQQ  183 (246)
T ss_pred             -----HHHHH--hhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence                 11111  223467899999999999999999877764

>KOG1673|consensus

Probab=99.24  E-value=4.4e-11  Score=100.85  Aligned_cols=136  Identities=19%  Similarity=0.240  Sum_probs=97.4

Q ss_pred             eeeeecceeE--EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         155 ARKATKGITE--FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       155 ~~~~T~Gi~~--~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      .+..|.|++.  .++.+++  +.+.+||+||||+++.+.+--..++-+|+|++||+..          ..+.....|+.+
T Consensus        48 ~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r----------~TLnSi~~WY~Q  117 (205)
T KOG1673|consen   48 EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR----------STLNSIKEWYRQ  117 (205)
T ss_pred             HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch----------HHHHHHHHHHHH
Confidence            4567888884  4555555  7889999999999999988888999999999999998          677777788887


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      ....  -..+--||+++|.|+|-. +  +. ++..         .-...|+.|-+-          -+...+++||....
T Consensus       118 Ar~~--NktAiPilvGTKyD~fi~-l--p~-e~Q~---------~I~~qar~YAk~----------mnAsL~F~Sts~sI  172 (205)
T KOG1673|consen  118 ARGL--NKTAIPILVGTKYDLFID-L--PP-ELQE---------TISRQARKYAKV----------MNASLFFCSTSHSI  172 (205)
T ss_pred             Hhcc--CCccceEEeccchHhhhc-C--CH-HHHH---------HHHHHHHHHHHH----------hCCcEEEeeccccc
Confidence            6542  233344789999998864 2  11 1111         011223333322          23457899999999


Q ss_pred             hHHHHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNTILH  325 (334)
Q Consensus       311 nI~~vf~~v~~~I~~  325 (334)
                      ||+.+|.-+...++.
T Consensus       173 Nv~KIFK~vlAklFn  187 (205)
T KOG1673|consen  173 NVQKIFKIVLAKLFN  187 (205)
T ss_pred             cHHHHHHHHHHHHhC
Confidence            999999988876653

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.24  E-value=5.8e-11  Score=105.11  Aligned_cols=125  Identities=15%  Similarity=0.212  Sum_probs=81.3

Q ss_pred             EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      ...+..++.++.+||++|++.++..|..++++++++|+|+|+++.           .......++..+..    .+.|++
T Consensus        57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-----------~~~~~~~~~~~~~~----~~~p~i  121 (194)
T cd01891          57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-----------PMPQTRFVLKKALE----LGLKPI  121 (194)
T ss_pred             eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cCCCEE
Confidence            445666788999999999999999999999999999999999873           12223333444332    367999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHH------H
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIV------F  316 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~v------f  316 (334)
                      |++||+|+..+..   ...+              +    -+.+.+..+... ....+.++++||++|.|+.+.      .
T Consensus       122 iv~NK~Dl~~~~~---~~~~--------------~----~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~  180 (194)
T cd01891         122 VVINKIDRPDARP---EEVV--------------D----EVFDLFIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDL  180 (194)
T ss_pred             EEEECCCCCCCCH---HHHH--------------H----HHHHHHHHhCCccccCccCEEEeehhccccccccccchhhH
Confidence            9999999865322   0001              1    111122222111 123567899999999887432      4


Q ss_pred             HHHHHHHH
Q psy3651         317 NAVKNTIL  324 (334)
Q Consensus       317 ~~v~~~I~  324 (334)
                      .++.+.|.
T Consensus       181 ~~l~~~~~  188 (194)
T cd01891         181 EPLFDTII  188 (194)
T ss_pred             HHHHHHHH
Confidence            44555444

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.20  E-value=1.9e-10  Score=99.91  Aligned_cols=124  Identities=13%  Similarity=0.135  Sum_probs=84.7

Q ss_pred             EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      ...+...+..+.+||++|+...+..|..++.+++++++|+|.++..           ......++.....    .+.|++
T Consensus        54 ~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-----------~~~~~~~~~~~~~----~~~~i~  118 (189)
T cd00881          54 VATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-----------QPQTREHLRIARE----GGLPII  118 (189)
T ss_pred             eEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-----------cHHHHHHHHHHHH----CCCCeE
Confidence            3444556788999999999999999999999999999999988742           1222233333322    568999


Q ss_pred             EEEeCCCcchh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc--------CCCCCeEEEEEeeecCchHHH
Q psy3651         244 LFLNKTDLLAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR--------DEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       244 L~lNK~Dl~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~--------~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      +++||+|+..+ .+                     +...+.+++.+.....        .......++++||+++.|+.+
T Consensus       119 iv~nK~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~  177 (189)
T cd00881         119 VAINKIDRVGEEDL---------------------EEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEE  177 (189)
T ss_pred             EEEECCCCcchhcH---------------------HHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHH
Confidence            99999998652 11                     0111122222222110        012457789999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         315 VFNAVKNTI  323 (334)
Q Consensus       315 vf~~v~~~I  323 (334)
                      +|+++.+.+
T Consensus       178 l~~~l~~~l  186 (189)
T cd00881         178 LLEAIVEHL  186 (189)
T ss_pred             HHHHHHhhC
Confidence            999988764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.16  E-value=1.6e-10  Score=94.65  Aligned_cols=113  Identities=19%  Similarity=0.211  Sum_probs=82.7

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+||++|+......|..++.+++++|+|+|+++.          ..+.....++..........+.|+++++||+|
T Consensus        44 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D  113 (157)
T cd00882          44 KVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR----------ESFENVKEWLLLILINKEGENIPIILVGNKID  113 (157)
T ss_pred             EEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhccCCCcEEEEEeccc
Confidence            67899999999999999999999999999999999996          45555555533444444557799999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      +....-   .....                   .... .    .....++++.+||+++.++.++++++.
T Consensus       114 ~~~~~~---~~~~~-------------------~~~~-~----~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         114 LPEERV---VSEEE-------------------LAEQ-L----AKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             cccccc---hHHHH-------------------HHHH-H----HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            865421   11000                   0000 0    112356789999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.14  E-value=2.7e-10  Score=96.16  Aligned_cols=118  Identities=16%  Similarity=0.074  Sum_probs=79.6

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccc------ccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRR------KWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |.......+.+.+..+.+|||+|+..+..      .+..++.  +++++|+|+|.++.          ..   ...++..
T Consensus        30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~~---~~~~~~~   96 (158)
T cd01879          30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL----------ER---NLYLTLQ   96 (158)
T ss_pred             ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc----------hh---HHHHHHH
Confidence            34444555666778899999999987664      3677775  99999999999875          22   1233434


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +..    .+.|+++++||+|+.....      +..             ... -+.+.         .++.++.+||.++.
T Consensus        97 ~~~----~~~~~iiv~NK~Dl~~~~~------~~~-------------~~~-~~~~~---------~~~~~~~iSa~~~~  143 (158)
T cd01879          97 LLE----LGLPVVVALNMIDEAEKRG------IKI-------------DLD-KLSEL---------LGVPVVPTSARKGE  143 (158)
T ss_pred             HHH----cCCCEEEEEehhhhccccc------chh-------------hHH-HHHHh---------hCCCeEEEEccCCC
Confidence            433    3589999999999854321      100             000 00111         12468899999999


Q ss_pred             hHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNT  322 (334)
Q Consensus       311 nI~~vf~~v~~~  322 (334)
                      |+..+|+++.+.
T Consensus       144 ~~~~l~~~l~~~  155 (158)
T cd01879         144 GIDELKDAIAEL  155 (158)
T ss_pred             CHHHHHHHHHHH
Confidence            999999998764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01898 Obg Obg subfamily

Probab=99.14  E-value=1.7e-10  Score=98.89  Aligned_cols=119  Identities=17%  Similarity=0.182  Sum_probs=73.1

Q ss_pred             EEeeCc-ceeeeecCCcc----cccccccccc---cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCC
Q psy3651         167 IVISNI-PFLFVDVGGQR----SQRRKWFQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIF  237 (334)
Q Consensus       167 ~~~~~~-~~~i~DvgGq~----~~r~kw~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~  237 (334)
                      +..++. .+.+|||+|+.    ..+..+..++   ++++++|+|+|+++.+         +.+.....+.+.+... +..
T Consensus        42 ~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---------~~~~~~~~~~~~l~~~~~~~  112 (170)
T cd01898          42 VRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDD---------DPVEDYKTIRNELELYNPEL  112 (170)
T ss_pred             EEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCC---------CHHHHHHHHHHHHHHhCccc
Confidence            344554 89999999974    2223344444   4699999999999851         1222222333333222 123


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|+++++||+|+.....      ...                 .+... ..    ......++.+||+++.|++++|+
T Consensus       113 ~~~p~ivv~NK~Dl~~~~~------~~~-----------------~~~~~-~~----~~~~~~~~~~Sa~~~~gi~~l~~  164 (170)
T cd01898         113 LEKPRIVVLNKIDLLDEEE------LFE-----------------LLKEL-LK----ELWGKPVFPISALTGEGLDELLR  164 (170)
T ss_pred             cccccEEEEEchhcCCchh------hHH-----------------HHHHH-Hh----hCCCCCEEEEecCCCCCHHHHHH
Confidence            5789999999999855321      111                 11111 11    01245688999999999999999


Q ss_pred             HHHHH
Q psy3651         318 AVKNT  322 (334)
Q Consensus       318 ~v~~~  322 (334)
                      ++.+.
T Consensus       165 ~i~~~  169 (170)
T cd01898         165 KLAEL  169 (170)
T ss_pred             HHHhh
Confidence            98764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.14  E-value=2.6e-10  Score=109.84  Aligned_cols=129  Identities=17%  Similarity=0.214  Sum_probs=84.0

Q ss_pred             eeeecceeEEEEEe-eCcceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         156 RKATKGITEFTIVI-SNIPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      +.|++|    .+.+ ++.++.+||++|...       ....|..+++.++++|+|+|+++.          ..+++...|
T Consensus       193 ~~p~~G----~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~----------~s~e~~~~~  258 (335)
T PRK12299        193 LHPNLG----VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAV----------DPVEDYKTI  258 (335)
T ss_pred             eCceEE----EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCC----------CCHHHHHHH
Confidence            344454    3444 457899999999842       233555667789999999999986          334444444


Q ss_pred             HHHHHhh-cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651         228 FDTIINN-VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA  306 (334)
Q Consensus       228 f~~i~~~-~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA  306 (334)
                      .+++... +.+.+.|++|++||+|+..+..  ..   .             +....+     ..     ...+.++.|||
T Consensus       259 ~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~--~~---~-------------~~~~~~-----~~-----~~~~~i~~iSA  310 (335)
T PRK12299        259 RNELEKYSPELADKPRILVLNKIDLLDEEE--ER---E-------------KRAALE-----LA-----ALGGPVFLISA  310 (335)
T ss_pred             HHHHHHhhhhcccCCeEEEEECcccCCchh--HH---H-------------HHHHHH-----HH-----hcCCCEEEEEc
Confidence            4444332 3345789999999999864321  00   0             001101     10     12356889999


Q ss_pred             ecCchHHHHHHHHHHHHHHH
Q psy3651         307 VDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       307 ~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ++++||+++|+++.+.+.+.
T Consensus       311 ktg~GI~eL~~~L~~~l~~~  330 (335)
T PRK12299        311 VTGEGLDELLRALWELLEEA  330 (335)
T ss_pred             CCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999887653

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.12  E-value=6.5e-10  Score=92.26  Aligned_cols=118  Identities=25%  Similarity=0.167  Sum_probs=80.0

Q ss_pred             EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCC
Q psy3651         164 EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNV  240 (334)
Q Consensus       164 ~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~  240 (334)
                      ...+..++  ..+.+||++|+..++..|..++..+.++++++|++..-         ..+.+.. .+...+... ...+.
T Consensus        40 ~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v---------~~~~~~~~~~~~~~~~~-~~~~~  109 (161)
T TIGR00231        40 TTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILV---------LDVEEILEKQTKEIIHH-AESNV  109 (161)
T ss_pred             EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeee---------hhhhhHhHHHHHHHHHh-cccCC
Confidence            33355566  78899999999999999999999999999999998751         2333333 222233222 22278


Q ss_pred             cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      |+++++||+|+....+  . .                     .....+..     .....++.+||+++.|+.++|+++.
T Consensus       110 p~ivv~nK~D~~~~~~--~-~---------------------~~~~~~~~-----~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       110 PIILVGNKIDLRDAKL--K-T---------------------HVAFLFAK-----LNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             cEEEEEEcccCCcchh--h-H---------------------HHHHHHhh-----ccCCceEEeecCCCCCHHHHHHHhh
Confidence            9999999999855322  0 0                     01111111     1223489999999999999999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0096|consensus

Probab=99.12  E-value=1.7e-10  Score=100.23  Aligned_cols=133  Identities=16%  Similarity=0.160  Sum_probs=103.7

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEe---eC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVI---SN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE  214 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~---~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~e  214 (334)
                      +.|...|.|           |+|+..+...+   .+ ++|..||++||+..-.+-.-||-...+.|+++|++.+      
T Consensus        33 geFe~~y~a-----------t~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr------   95 (216)
T KOG0096|consen   33 GEFEKTYPA-----------TLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSR------   95 (216)
T ss_pred             ccceecccC-----------cceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeeh------
Confidence            445566666           56766554433   33 8999999999999999999999999999999999998      


Q ss_pred             ccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651         215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD  294 (334)
Q Consensus       215 d~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~  294 (334)
                          .....+-.|.++.+..  ..|+||++.+||.|+...++  +..++.-                            .
T Consensus        96 ----~t~~n~~rwhrd~~rv--~~NiPiv~cGNKvDi~~r~~--k~k~v~~----------------------------~  139 (216)
T KOG0096|consen   96 ----FTYKNVPRWHRDLVRV--RENIPIVLCGNKVDIKARKV--KAKPVSF----------------------------H  139 (216)
T ss_pred             ----hhhhcchHHHHHHHHH--hcCCCeeeeccceecccccc--cccccee----------------------------e
Confidence                6677777777777664  36799999999999977654  3333321                            1


Q ss_pred             CCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         295 EKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       295 ~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ..+++.+++.||+...|.+.-|.|+...+.
T Consensus       140 rkknl~y~~iSaksn~NfekPFl~LarKl~  169 (216)
T KOG0096|consen  140 RKKNLQYYEISAKSNYNFERPFLWLARKLT  169 (216)
T ss_pred             ecccceeEEeecccccccccchHHHhhhhc
Confidence            236789999999999999999999988665

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.09  E-value=1.4e-09  Score=97.49  Aligned_cols=76  Identities=22%  Similarity=0.433  Sum_probs=63.2

Q ss_pred             eCcceeeeecCCcccccccccccccCC-CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEEEE
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSV-TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFILFL  246 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v-~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL~l  246 (334)
                      ++..+.+||++|+...|..|..+++++ +++|||+|.++..         +.+.++..++..++....  ..++|++|++
T Consensus        46 ~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~---------~~~~~~~~~l~~il~~~~~~~~~~pvliv~  116 (203)
T cd04105          46 KGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ---------KNLKDVAEFLYDILTDLEKVKNKIPVLIAC  116 (203)
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch---------hHHHHHHHHHHHHHHHHhhccCCCCEEEEe
Confidence            367899999999999999999999998 9999999999961         467777777777665432  2578999999


Q ss_pred             eCCCcchh
Q psy3651         247 NKTDLLAE  254 (334)
Q Consensus       247 NK~Dl~~e  254 (334)
                      ||+|++.+
T Consensus       117 NK~Dl~~a  124 (203)
T cd04105         117 NKQDLFTA  124 (203)
T ss_pred             cchhhccc
Confidence            99999764

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK04213 GTP-binding protein; Provisional

Probab=99.09  E-value=1.1e-09  Score=97.07  Aligned_cols=124  Identities=11%  Similarity=0.172  Sum_probs=73.2

Q ss_pred             ceeeeecCC-----------ccccccccccccc----CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         173 PFLFVDVGG-----------QRSQRRKWFQCFD----SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       173 ~~~i~DvgG-----------q~~~r~kw~~~f~----~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      .+.+|||+|           |+..|..|.+|+.    .++++++|+|.+++.+....-.....+.....++..+..    
T Consensus        53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  128 (201)
T PRK04213         53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE----  128 (201)
T ss_pred             ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH----
Confidence            689999999           7788888888875    357889999987652211000000112222333333322    


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      .++|++|++||+|+..++-    ....                  -+.+. .++... ......++.|||+++ ||.++|
T Consensus       129 ~~~p~iiv~NK~Dl~~~~~----~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~SA~~g-gi~~l~  184 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNRD----EVLD------------------EIAER-LGLYPPWRQWQDIIAPISAKKG-GIEELK  184 (201)
T ss_pred             cCCCeEEEEECccccCcHH----HHHH------------------HHHHH-hcCCccccccCCcEEEEecccC-CHHHHH
Confidence            4689999999999864320    0000                  11111 111000 001124789999999 999999


Q ss_pred             HHHHHHHH
Q psy3651         317 NAVKNTIL  324 (334)
Q Consensus       317 ~~v~~~I~  324 (334)
                      +++.+.+.
T Consensus       185 ~~l~~~~~  192 (201)
T PRK04213        185 EAIRKRLH  192 (201)
T ss_pred             HHHHHhhc
Confidence            99988754

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.08  E-value=6.4e-10  Score=96.47  Aligned_cols=125  Identities=17%  Similarity=0.177  Sum_probs=94.3

Q ss_pred             eeeecceeEEEEEeeC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         156 RKATKGITEFTIVISN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      |..|++++.....+.+ ..+.++++.||++++.+|..+++++.++|+++|.+..          ..+ ++..+.+-+-..
T Consensus        51 r~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~----------~~~-~a~~ii~f~~~~  119 (187)
T COG2229          51 RPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRP----------ITF-HAEEIIDFLTSR  119 (187)
T ss_pred             cceeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCC----------cch-HHHHHHHHHhhc
Confidence            4578888888888866 9999999999999999999999999999999999986          444 444444333221


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                         ..+|++++.||+||+...   ..+.+.+++                      .+   ....++.+.++|+++++..+
T Consensus       120 ---~~ip~vVa~NK~DL~~a~---ppe~i~e~l----------------------~~---~~~~~~vi~~~a~e~~~~~~  168 (187)
T COG2229         120 ---NPIPVVVAINKQDLFDAL---PPEKIREAL----------------------KL---ELLSVPVIEIDATEGEGARD  168 (187)
T ss_pred             ---cCCCEEEEeeccccCCCC---CHHHHHHHH----------------------Hh---ccCCCceeeeecccchhHHH
Confidence               118999999999999863   344444431                      11   11467789999999999999


Q ss_pred             HHHHHHHH
Q psy3651         315 VFNAVKNT  322 (334)
Q Consensus       315 vf~~v~~~  322 (334)
                      .++.+...
T Consensus       169 ~L~~ll~~  176 (187)
T COG2229         169 QLDVLLLK  176 (187)
T ss_pred             HHHHHHhh
Confidence            88766543

>cd01889 SelB_euk SelB subfamily

Probab=99.07  E-value=1.5e-09  Score=95.90  Aligned_cols=117  Identities=20%  Similarity=0.149  Sum_probs=72.6

Q ss_pred             CcceeeeecCCcccccccccccc---cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLN  247 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lN  247 (334)
                      +..+.+||++|+...   +..++   ..++++++|+|.++..+.        ...+.+.    +...   .+.|+++++|
T Consensus        67 ~~~~~i~DtpG~~~~---~~~~~~~~~~~d~vi~VvD~~~~~~~--------~~~~~~~----~~~~---~~~~~iiv~N  128 (192)
T cd01889          67 NLQITLVDCPGHASL---IRTIIGGAQIIDLMLLVVDATKGIQT--------QTAECLV----IGEI---LCKKLIVVLN  128 (192)
T ss_pred             CceEEEEECCCcHHH---HHHHHHHHhhCCEEEEEEECCCCccH--------HHHHHHH----HHHH---cCCCEEEEEE
Confidence            688999999999643   44444   467899999999874110        0111111    1111   2569999999


Q ss_pred             CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      |+|+.....      ...          ..+...+.+...+....   ...+.++.+||++++|+.++++++.+.|.
T Consensus       129 K~Dl~~~~~------~~~----------~~~~~~~~l~~~~~~~~---~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         129 KIDLIPEEE------RER----------KIEKMKKKLQKTLEKTR---FKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CcccCCHHH------HHH----------HHHHHHHHHHHHHHhcC---cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            999864211      000          01122223333322211   13567899999999999999999998775

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.07  E-value=8.4e-10  Score=94.80  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=78.2

Q ss_pred             eEEEEEee-CcceeeeecCCcc----cccccc---cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         163 TEFTIVIS-NIPFLFVDVGGQR----SQRRKW---FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       163 ~~~~~~~~-~~~~~i~DvgGq~----~~r~kw---~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ....+.++ +..+.+||++|+.    ..+..|   ..++.+++++++|+|.++.+..    ...+.+.+...+..++...
T Consensus        34 ~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~  109 (176)
T cd01881          34 NLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDI----GGVDPLEDYEILNAELKLY  109 (176)
T ss_pred             cceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccc----cccCHHHHHHHHHHHHHHh
Confidence            33345566 8899999999973    233333   3456789999999999986200    0001333333344444332


Q ss_pred             cC------CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651         235 VI------FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD  308 (334)
Q Consensus       235 ~~------~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d  308 (334)
                      ..      ..+.|+++++||+|+.....      +...                 +.   ...  .......++.+||++
T Consensus       110 ~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------~~~~-----------------~~---~~~--~~~~~~~~~~~Sa~~  161 (176)
T cd01881         110 DLETILGLLTAKPVIYVLNKIDLDDAEE------LEEE-----------------LV---REL--ALEEGAEVVPISAKT  161 (176)
T ss_pred             hhhhHHHHHhhCCeEEEEEchhcCchhH------HHHH-----------------HH---HHH--hcCCCCCEEEEehhh
Confidence            21      24689999999999864321      1110                 00   000  112345689999999


Q ss_pred             CchHHHHHHHHHHH
Q psy3651         309 TENIKIVFNAVKNT  322 (334)
Q Consensus       309 ~~nI~~vf~~v~~~  322 (334)
                      +.|+.++++++...
T Consensus       162 ~~gl~~l~~~l~~~  175 (176)
T cd01881         162 EEGLDELIRAIYEL  175 (176)
T ss_pred             hcCHHHHHHHHHhh
Confidence            99999999988654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01878 HflX HflX subfamily

Probab=99.06  E-value=1.1e-09  Score=97.55  Aligned_cols=119  Identities=19%  Similarity=0.229  Sum_probs=75.0

Q ss_pred             ecceeEEEEEeeC-cceeeeecCCcccc---------cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         159 TKGITEFTIVISN-IPFLFVDVGGQRSQ---------RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       159 T~Gi~~~~~~~~~-~~~~i~DvgGq~~~---------r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      |.......+.+.+ ..+.+||++|+...         +..| ..+.+++++++|+|+++.          ..... ...+
T Consensus        75 t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~----------~~~~~-~~~~  142 (204)
T cd01878          75 TLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDP----------DYEEQ-IETV  142 (204)
T ss_pred             eccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCC----------ChhhH-HHHH
Confidence            3333334444444 38999999998432         2222 236789999999999986          22222 2222


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD  308 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d  308 (334)
                      ...+..-...+.|+++|+||+|+..+..  .    ..                     . .     ......++++||++
T Consensus       143 ~~~l~~~~~~~~~viiV~NK~Dl~~~~~--~----~~---------------------~-~-----~~~~~~~~~~Sa~~  189 (204)
T cd01878         143 EKVLKELGAEDIPMILVLNKIDLLDDEE--L----EE---------------------R-L-----EAGRPDAVFISAKT  189 (204)
T ss_pred             HHHHHHcCcCCCCEEEEEEccccCChHH--H----HH---------------------H-h-----hcCCCceEEEEcCC
Confidence            2333322335689999999999865432  0    00                     0 0     11234588999999


Q ss_pred             CchHHHHHHHHHHH
Q psy3651         309 TENIKIVFNAVKNT  322 (334)
Q Consensus       309 ~~nI~~vf~~v~~~  322 (334)
                      +.|+.++|+++.+.
T Consensus       190 ~~gi~~l~~~L~~~  203 (204)
T cd01878         190 GEGLDELLEAIEEL  203 (204)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.05  E-value=3.1e-09  Score=93.70  Aligned_cols=131  Identities=11%  Similarity=0.164  Sum_probs=91.1

Q ss_pred             eeecceeEEEEE--eeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         157 KATKGITEFTIV--ISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       157 ~~T~Gi~~~~~~--~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .-|+......+.  ..+..+.++|++|+..+.+........+|++|+|+|..+-           -.......+..+.. 
T Consensus        53 ~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g-----------~~~~~~~~l~~~~~-  120 (188)
T PF00009_consen   53 GITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDG-----------IQPQTEEHLKILRE-  120 (188)
T ss_dssp             TSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTB-----------STHHHHHHHHHHHH-
T ss_pred             ccccccccccccccccccceeecccccccceeecccceecccccceeeeecccc-----------cccccccccccccc-
Confidence            344455555565  6789999999999999888888889999999999999873           33344555555443 


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecCchHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIK  313 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~~nI~  313 (334)
                         .+.|+++++||+|+...++  .                   ...+-+...|.+...... ..++++++||..|.|+.
T Consensus       121 ---~~~p~ivvlNK~D~~~~~~--~-------------------~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~  176 (188)
T PF00009_consen  121 ---LGIPIIVVLNKMDLIEKEL--E-------------------EIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGID  176 (188)
T ss_dssp             ---TT-SEEEEEETCTSSHHHH--H-------------------HHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHH
T ss_pred             ---cccceEEeeeeccchhhhH--H-------------------HHHHHHHHHhccccccCccccceEEEEecCCCCCHH
Confidence               5678999999999985543  1                   111122222222111222 35889999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         314 IVFNAVKNTI  323 (334)
Q Consensus       314 ~vf~~v~~~I  323 (334)
                      .+++.+.+.+
T Consensus       177 ~Ll~~l~~~~  186 (188)
T PF00009_consen  177 ELLEALVELL  186 (188)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhC
Confidence            9998887654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.03  E-value=2.3e-09  Score=106.23  Aligned_cols=123  Identities=13%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             EEEEEeeCcceeeeecCCcccccccc-----------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKW-----------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw-----------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...+..++..+.+|||+|++..++.+           ..+++.+|++|+|+|.++.           -......++..+.
T Consensus       212 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~-----------~~~~~~~~~~~~~  280 (429)
T TIGR03594       212 DIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEG-----------ITEQDLRIAGLIL  280 (429)
T ss_pred             eEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCC-----------ccHHHHHHHHHHH
Confidence            34455677889999999998766554           3467899999999999874           1222334454444


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.|+++++||+|+.....  .   +              +...+.+...+..     -..+.++++||++|.||
T Consensus       281 ~----~~~~iiiv~NK~Dl~~~~~--~---~--------------~~~~~~~~~~~~~-----~~~~~vi~~SA~~g~~v  332 (429)
T TIGR03594       281 E----AGKALVIVVNKWDLVKDEK--T---R--------------EEFKKELRRKLPF-----LDFAPIVFISALTGQGV  332 (429)
T ss_pred             H----cCCcEEEEEECcccCCCHH--H---H--------------HHHHHHHHHhccc-----CCCCceEEEeCCCCCCH
Confidence            3    4689999999999862111  0   1              1111122222111     13467899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILH  325 (334)
Q Consensus       313 ~~vf~~v~~~I~~  325 (334)
                      .++|+++.+....
T Consensus       333 ~~l~~~i~~~~~~  345 (429)
T TIGR03594       333 DKLLDAIDEVYEN  345 (429)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999886654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.00  E-value=2.2e-09  Score=110.75  Aligned_cols=111  Identities=13%  Similarity=0.132  Sum_probs=76.7

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+.+|||+|+..++..|..++++++++|+|+|.++-.          . .+....|.....    .+.|+++|+||+|+
T Consensus        70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~----------~-~qt~~~~~~~~~----~~ipiIiViNKiDl  134 (595)
T TIGR01393        70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI----------E-AQTLANVYLALE----NDLEIIPVINKIDL  134 (595)
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC----------C-HhHHHHHHHHHH----cCCCEEEEEECcCC
Confidence            78999999999999999999999999999999999841          1 122333333332    35799999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      .....   .                  ...+-+.+. .++     ....++.+||+++.||.++|+++.+.+.
T Consensus       135 ~~~~~---~------------------~~~~el~~~-lg~-----~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       135 PSADP---E------------------RVKKEIEEV-IGL-----DASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             CccCH---H------------------HHHHHHHHH-hCC-----CcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            54211   0                  000011111 111     1124688999999999999999987653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.00  E-value=1.6e-09  Score=104.07  Aligned_cols=128  Identities=18%  Similarity=0.233  Sum_probs=79.9

Q ss_pred             eeeecceeEEEEEeeC-cceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         156 RKATKGITEFTIVISN-IPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      +.|++|+.    .+.+ ..+.+||++|+..       .+..|..+++.++++|||+|+++.+.       .+.+++...+
T Consensus       192 ~~p~ig~v----~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~-------~~~~e~l~~l  260 (329)
T TIGR02729       192 LVPNLGVV----RVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDG-------RDPIEDYEII  260 (329)
T ss_pred             cCCEEEEE----EeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccc-------cCHHHHHHHH
Confidence            45566643    4444 7899999999853       22345555678999999999998521       0222222233


Q ss_pred             HHHHHhh-cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651         228 FDTIINN-VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA  306 (334)
Q Consensus       228 f~~i~~~-~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA  306 (334)
                      .+++... +.+.+.|++|++||+|+..+..      +.+              ..+.+.+.         ..+.++.+||
T Consensus       261 ~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~------~~~--------------~~~~l~~~---------~~~~vi~iSA  311 (329)
T TIGR02729       261 RNELKKYSPELAEKPRIVVLNKIDLLDEEE------LAE--------------LLKELKKA---------LGKPVFPISA  311 (329)
T ss_pred             HHHHHHhhhhhccCCEEEEEeCccCCChHH------HHH--------------HHHHHHHH---------cCCcEEEEEc
Confidence            3333221 3346789999999999865421      111              00111111         1245789999


Q ss_pred             ecCchHHHHHHHHHHHH
Q psy3651         307 VDTENIKIVFNAVKNTI  323 (334)
Q Consensus       307 ~d~~nI~~vf~~v~~~I  323 (334)
                      +++++|+++++++.+.+
T Consensus       312 ktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       312 LTGEGLDELLYALAELL  328 (329)
T ss_pred             cCCcCHHHHHHHHHHHh
Confidence            99999999999998753

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01894 EngA1 EngA1 subfamily

Probab=98.99  E-value=2.9e-09  Score=89.44  Aligned_cols=112  Identities=19%  Similarity=0.161  Sum_probs=74.3

Q ss_pred             EEEEEeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      .......+..+.+||++|+...+.        .|..++++++++|+|+|.++..+         .  ....+++. +.. 
T Consensus        37 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---------~--~~~~~~~~-~~~-  103 (157)
T cd01894          37 YGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT---------P--ADEEIAKY-LRK-  103 (157)
T ss_pred             eEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC---------c--cHHHHHHH-HHh-
Confidence            334455678899999999988654        44567889999999999876411         1  11122222 221 


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                        .+.|+++++||+|+.....  .    .                     ..+..+.     .-.++++||+++.|+.++
T Consensus       104 --~~~piiiv~nK~D~~~~~~--~----~---------------------~~~~~~~-----~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894         104 --SKKPVILVVNKVDNIKEED--E----A---------------------AEFYSLG-----FGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             --cCCCEEEEEECcccCChHH--H----H---------------------HHHHhcC-----CCCeEEEecccCCCHHHH
Confidence              2489999999999865422  1    0                     0011111     113679999999999999


Q ss_pred             HHHHHHH
Q psy3651         316 FNAVKNT  322 (334)
Q Consensus       316 f~~v~~~  322 (334)
                      |+++.+.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=98.98  E-value=2.3e-09  Score=95.84  Aligned_cols=116  Identities=16%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.+.+.|.....+++++|+|+|+++...       .....+.+..+   ..   ....|++|++||+|+
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~-------~~~t~~~l~~~---~~---~~~~~iiivvNK~Dl  149 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCP-------QPQTSEHLAAL---EI---MGLKHIIIVQNKIDL  149 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCC-------CcchHHHHHHH---HH---cCCCcEEEEEEchhc
Confidence            678899999999988888888899999999999987310       01122233222   11   122479999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ..+.      .+.              ...+.+++.+....   ...+.++.+||++++||.++|+++.+.+
T Consensus       150 ~~~~------~~~--------------~~~~~i~~~~~~~~---~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         150 VKEE------QAL--------------ENYEQIKKFVKGTI---AENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             cCHH------HHH--------------HHHHHHHHHHhccc---cCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            6421      000              11112222222110   1245689999999999999999987644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.97  E-value=2.4e-09  Score=103.81  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=75.7

Q ss_pred             ecceeEEEEEe-eCcceeeeecCCccc---------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         159 TKGITEFTIVI-SNIPFLFVDVGGQRS---------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       159 T~Gi~~~~~~~-~~~~~~i~DvgGq~~---------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      |.......+.+ ++..+.+|||+|..+         +++.| ..+.++|++|+|+|.++.          ... +.+..+
T Consensus       223 T~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~----------~~~-~~~~~~  290 (351)
T TIGR03156       223 TLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDP----------DRE-EQIEAV  290 (351)
T ss_pred             ccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCC----------chH-HHHHHH
Confidence            44444555666 568999999999832         33322 247899999999999986          222 222223


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD  308 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d  308 (334)
                      ..++..-...+.|+++|+||+|+....-      +...                      .    .  ....++.+||++
T Consensus       291 ~~~L~~l~~~~~piIlV~NK~Dl~~~~~------v~~~----------------------~----~--~~~~~i~iSAkt  336 (351)
T TIGR03156       291 EKVLEELGAEDIPQLLVYNKIDLLDEPR------IERL----------------------E----E--GYPEAVFVSAKT  336 (351)
T ss_pred             HHHHHHhccCCCCEEEEEEeecCCChHh------HHHH----------------------H----h--CCCCEEEEEccC
Confidence            3333322234689999999999854210      1000                      0    0  112368899999


Q ss_pred             CchHHHHHHHHHHH
Q psy3651         309 TENIKIVFNAVKNT  322 (334)
Q Consensus       309 ~~nI~~vf~~v~~~  322 (334)
                      +.||+++++++.+.
T Consensus       337 g~GI~eL~~~I~~~  350 (351)
T TIGR03156       337 GEGLDLLLEAIAER  350 (351)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.97  E-value=9.2e-09  Score=105.83  Aligned_cols=120  Identities=13%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             EEEEEeeCc-ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         164 EFTIVISNI-PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       164 ~~~~~~~~~-~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      ...+.+.+. .+.+|||+|++.+...|..++..+|++|+|+|.++-           .+.++...+....    ..++|+
T Consensus       126 ~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg-----------v~~qT~e~i~~~~----~~~vPi  190 (587)
T TIGR00487       126 AYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG-----------VMPQTIEAISHAK----AANVPI  190 (587)
T ss_pred             EEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC-----------CCHhHHHHHHHHH----HcCCCE
Confidence            344555444 899999999999999999999999999999998863           3334444333222    246899


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      ++++||+|+.....                     +.+...+...  ++.. .-.....++.+||++|+||.++|+++..
T Consensus       191 IVviNKiDl~~~~~---------------------e~v~~~L~~~--g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       191 IVAINKIDKPEANP---------------------DRVKQELSEY--GLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEEEECcccccCCH---------------------HHHHHHHHHh--hhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            99999999854211                     1111111110  0000 0012356889999999999999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.96  E-value=1.7e-09  Score=97.92  Aligned_cols=135  Identities=14%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .|..|.......+..++.++.+||++|++.+.+.|......++++|+|+|.++-+.   +. ......+....+... . 
T Consensus        60 ~rg~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~---~~-~~~~~~~~~~~~~~~-~-  133 (219)
T cd01883          60 ERGVTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEF---EA-GFEKGGQTREHALLA-R-  133 (219)
T ss_pred             hCccCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCcc---cc-ccccccchHHHHHHH-H-
Confidence            34556666677888899999999999999888888888889999999999998410   00 001111222222221 1 


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                       .....|+++++||+|+.....  ....              .+...+-+...+..+. ...+.+.++.+||++|.||.
T Consensus       134 -~~~~~~iiivvNK~Dl~~~~~--~~~~--------------~~~i~~~l~~~l~~~~-~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         134 -TLGVKQLIVAVNKMDDVTVNW--SEER--------------YDEIKKELSPFLKKVG-YNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             -HcCCCeEEEEEEccccccccc--cHHH--------------HHHHHHHHHHHHHHcC-CCcCCceEEEeecCcCCCCC
Confidence             123368999999999873200  0000              1112222332222221 11246889999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.95  E-value=4.3e-09  Score=111.04  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=82.5

Q ss_pred             EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      ...+.+.+..+.||||+|+..+...|..++..+|++|+|+|.++           ..+.++...+....    ..++|+|
T Consensus       329 a~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd-----------Gv~~qT~e~i~~a~----~~~vPiI  393 (787)
T PRK05306        329 AYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD-----------GVMPQTIEAINHAK----AAGVPII  393 (787)
T ss_pred             EEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC-----------CCCHhHHHHHHHHH----hcCCcEE
Confidence            34566667889999999999999999999999999999999987           23344444443322    2568999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      |++||+|+.......-...+..+               .++..       .....+.++.+||++|.||.++|+++..
T Consensus       394 VviNKiDl~~a~~e~V~~eL~~~---------------~~~~e-------~~g~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        394 VAINKIDKPGANPDRVKQELSEY---------------GLVPE-------EWGGDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             EEEECccccccCHHHHHHHHHHh---------------cccHH-------HhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence            99999998542110000111110               00000       0013467899999999999999998875

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.94  E-value=9.5e-09  Score=103.47  Aligned_cols=123  Identities=15%  Similarity=0.189  Sum_probs=78.3

Q ss_pred             EEEEEeeCcceeeeecCCcccccc--cc---------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRR--KW---------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~--kw---------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...+.+++..+.+|||+|++...+  .+         ..++++++++|+|+|.++.          .. .+.+.++..+.
T Consensus       251 ~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~----------~s-~~~~~~~~~~~  319 (472)
T PRK03003        251 DSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEP----------IS-EQDQRVLSMVI  319 (472)
T ss_pred             eEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CC-HHHHHHHHHHH
Confidence            345566778889999999854211  11         2356799999999999985          22 22334555554


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.|+||++||+|+..+..   ...+.                 .-+.+.   +..  .....+++|||+++.||
T Consensus       320 ~----~~~piIiV~NK~Dl~~~~~---~~~~~-----------------~~i~~~---l~~--~~~~~~~~~SAk~g~gv  370 (472)
T PRK03003        320 E----AGRALVLAFNKWDLVDEDR---RYYLE-----------------REIDRE---LAQ--VPWAPRVNISAKTGRAV  370 (472)
T ss_pred             H----cCCCEEEEEECcccCChhH---HHHHH-----------------HHHHHh---ccc--CCCCCEEEEECCCCCCH
Confidence            3    4689999999999864211   00000                 011111   110  12245789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILHR  326 (334)
Q Consensus       313 ~~vf~~v~~~I~~~  326 (334)
                      .++|..+.+.+-+.
T Consensus       371 ~~lf~~i~~~~~~~  384 (472)
T PRK03003        371 DKLVPALETALESW  384 (472)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998876543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.94  E-value=1.9e-09  Score=89.99  Aligned_cols=99  Identities=12%  Similarity=0.130  Sum_probs=62.3

Q ss_pred             eeeecCCccc-----ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         175 LFVDVGGQRS-----QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       175 ~i~DvgGq~~-----~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+||++|+..     ++... ..+++++++|+|+|+++..+.          .. ..+ ....      ..|+++++||+
T Consensus        38 ~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d~~~~~s~----------~~-~~~-~~~~------~~p~ilv~NK~   98 (142)
T TIGR02528        38 GAIDTPGEYVENRRLYSALI-VTAADADVIALVQSATDPESR----------FP-PGF-ASIF------VKPVIGLVTKI   98 (142)
T ss_pred             eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEecCCCCCcC----------CC-hhH-HHhc------cCCeEEEEEee
Confidence            6899999842     22222 247899999999999987432          11 112 1111      23999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      |+.....  .                 .+.+.++++..         ....++++||+++.|++++|+++.
T Consensus        99 Dl~~~~~--~-----------------~~~~~~~~~~~---------~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        99 DLAEADV--D-----------------IERAKELLETA---------GAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ccCCccc--C-----------------HHHHHHHHHHc---------CCCcEEEEecCCCCCHHHHHHHHh
Confidence            9864211  1                 11122222211         112578999999999999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.94  E-value=1.4e-08  Score=93.25  Aligned_cols=154  Identities=14%  Similarity=0.133  Sum_probs=97.3

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.|..|+......+..++.++.+|||+|+..+...|..+++.++++|+|+|.++-           .......+++.+..
T Consensus        46 ~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g-----------~~~~~~~~~~~~~~  114 (237)
T cd04168          46 RQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG-----------VQAQTRILWRLLRK  114 (237)
T ss_pred             hhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence            3455566666777888899999999999999999999999999999999999873           12233444544332


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhh---------CCCCCCC-------Cc-cHHHHH---HHHHHHHHhhcc
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEH---------FPEFEGD-------PQ-DMQAVQ---TFLLNYFKAVKR  293 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~---------Fp~y~g~-------~~-~~~~~~---~fi~~~F~~l~~  293 (334)
                          .+.|+++|+||+|+......+.-..+.+.         .|.+...       +. -.+.+.   +-+.++|.+-..
T Consensus       115 ----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~  190 (237)
T cd04168         115 ----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGP  190 (237)
T ss_pred             ----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCC
Confidence                36899999999998742210011122222         2322110       00 011111   223333332110


Q ss_pred             --------------CCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         294 --------------DEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       294 --------------~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                                    ...+-++++..||..+.||+.+++.+.+.
T Consensus       191 ~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~  233 (237)
T cd04168         191 IEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKL  233 (237)
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHh
Confidence                          11345678889999999999999988764

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG3883|consensus

Probab=98.92  E-value=5.8e-09  Score=87.95  Aligned_cols=137  Identities=15%  Similarity=0.187  Sum_probs=98.5

Q ss_pred             CCCCCCcccccceeeeec-ceeEEEEEeeCcceeeeecCCcccc-cccccccccCCCeEEEEEeCCCccchhhccccccc
Q psy3651         143 QDYIPSNKDILHARKATK-GITEFTIVISNIPFLFVDVGGQRSQ-RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNR  220 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~-Gi~~~~~~~~~~~~~i~DvgGq~~~-r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nr  220 (334)
                      .+|.||.+|+..+...|- |.-        -.++++||+|-... ..+-.|||+-+|+.++|+|..++          .+
T Consensus        38 ~e~~pTiEDiY~~svet~rgar--------E~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~----------eS   99 (198)
T KOG3883|consen   38 TELHPTIEDIYVASVETDRGAR--------EQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDP----------ES   99 (198)
T ss_pred             CccccchhhheeEeeecCCChh--------heEEEeecccccCchhhhhHhHhccCceEEEEecCCCH----------HH
Confidence            579999999976655442 222        35889999998877 67888999999999999999998          44


Q ss_pred             HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeE
Q psy3651         221 LHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLF  300 (334)
Q Consensus       221 l~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~  300 (334)
                      |+..-.+-..|-.+..-+.+||++++||.|+.+.+-  ...++.+                .+          ++...+.
T Consensus       100 f~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~--vd~d~A~----------------~W----------a~rEkvk  151 (198)
T KOG3883|consen  100 FQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE--VDMDVAQ----------------IW----------AKREKVK  151 (198)
T ss_pred             HHHHHHHHHHHhhccccccccEEEEechhhcccchh--cCHHHHH----------------HH----------Hhhhhee
Confidence            444333334444456667899999999999865432  2222222                11          1234578


Q ss_pred             EEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         301 HHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       301 ~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      .++++|+|...+-+-|..+...+.+
T Consensus       152 l~eVta~dR~sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  152 LWEVTAMDRPSLYEPFTYLASRLHQ  176 (198)
T ss_pred             EEEEEeccchhhhhHHHHHHHhccC
Confidence            8999999999999999988876654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.91  E-value=6.5e-09  Score=107.14  Aligned_cols=134  Identities=18%  Similarity=0.235  Sum_probs=94.8

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.|..|+......+.+++.++.+|||+|+..+...|..+++.+|++|+|+|.++           ..+.....+|..+..
T Consensus        46 rerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~-----------G~~~qT~~~l~~a~~  114 (594)
T TIGR01394        46 RERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASE-----------GPMPQTRFVLKKALE  114 (594)
T ss_pred             HhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCC-----------CCcHHHHHHHHHHHH
Confidence            345556666667788899999999999999999999999999999999999987           234555666666654


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCc--
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTE--  310 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~--  310 (334)
                          .+.|+|+|+||+|+..++.  .                   .+.+-+.+.|..+... ....+++.++||+++.  
T Consensus       115 ----~~ip~IVviNKiD~~~a~~--~-------------------~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~  169 (594)
T TIGR01394       115 ----LGLKPIVVINKIDRPSARP--D-------------------EVVDEVFDLFAELGADDEQLDFPIVYASGRAGWAS  169 (594)
T ss_pred             ----CCCCEEEEEECCCCCCcCH--H-------------------HHHHHHHHHHHhhccccccccCcEEechhhcCccc
Confidence                4579999999999865432  1                   1111222222222211 1234678899999985  


Q ss_pred             --------hHHHHHHHHHHHH
Q psy3651         311 --------NIKIVFNAVKNTI  323 (334)
Q Consensus       311 --------nI~~vf~~v~~~I  323 (334)
                              ++..+|+.+.+.+
T Consensus       170 ~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       170 LDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             ccCcccccCHHHHHHHHHHhC
Confidence                    7888888877755

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.91  E-value=4.7e-09  Score=108.38  Aligned_cols=112  Identities=16%  Similarity=0.146  Sum_probs=77.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ++.+++|||+|+..+...|..+++.++++|+|+|.++-.+           .+....|.....    .+.|+++|+||+|
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~-----------~qt~~~~~~~~~----~~lpiIvViNKiD  137 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVE-----------AQTLANVYLALE----NDLEIIPVLNKID  137 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCC-----------HHHHHHHHHHHH----CCCCEEEEEECCC
Confidence            5789999999999999999999999999999999998421           122223333322    3679999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +..+..  .                   ...+-+.+. .++     ....++.+||+++.||.++++++.+.+.
T Consensus       138 l~~a~~--~-------------------~v~~ei~~~-lg~-----~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        138 LPAADP--E-------------------RVKQEIEDV-IGI-----DASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             CCcccH--H-------------------HHHHHHHHH-hCC-----CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            854321  0                   000011111 111     1123789999999999999999987664

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.90  E-value=5.3e-09  Score=105.28  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=76.1

Q ss_pred             EEEEEeeCcceeeeecCCccc--------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         164 EFTIVISNIPFLFVDVGGQRS--------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~--------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ...+...+..+.+|||||+..        .+..|..++.++++||||+|.++...        ....   .++. .+.. 
T Consensus        78 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s--------~~~~---~i~~-~l~~-  144 (472)
T PRK03003         78 SYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT--------ATDE---AVAR-VLRR-  144 (472)
T ss_pred             EEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC--------HHHH---HHHH-HHHH-
Confidence            344556778899999999873        34456778999999999999998511        1111   2222 2221 


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                        .+.|++||+||+|+.....     ...+                      +..+    ... ..++|||++|.||.++
T Consensus       145 --~~~piilV~NK~Dl~~~~~-----~~~~----------------------~~~~----g~~-~~~~iSA~~g~gi~eL  190 (472)
T PRK03003        145 --SGKPVILAANKVDDERGEA-----DAAA----------------------LWSL----GLG-EPHPVSALHGRGVGDL  190 (472)
T ss_pred             --cCCCEEEEEECccCCccch-----hhHH----------------------HHhc----CCC-CeEEEEcCCCCCcHHH
Confidence              4689999999999853211     0011                      0111    111 1368999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         316 FNAVKNTILH  325 (334)
Q Consensus       316 f~~v~~~I~~  325 (334)
                      |+++.+.+.+
T Consensus       191 ~~~i~~~l~~  200 (472)
T PRK03003        191 LDAVLAALPE  200 (472)
T ss_pred             HHHHHhhccc
Confidence            9999987754

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.90  E-value=1.9e-08  Score=91.98  Aligned_cols=148  Identities=16%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEe-eCcceeeeecCCcccccc-----cccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVI-SNIPFLFVDVGGQRSQRR-----KWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~-----kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      .+|.|.+.   .--.+|+.+....+.+ +.+.+++||.|||..+-.     .....|++|.++|||+|+.+.        
T Consensus        21 ~~~~p~dT---~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~--------   89 (232)
T PF04670_consen   21 HKYSPRDT---LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSD--------   89 (232)
T ss_dssp             S---GGGG---GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-S--------
T ss_pred             cCCCchhc---cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccc--------
Confidence            78888653   2235788888777764 568999999999986543     356789999999999999953        


Q ss_pred             ccccHHHHHHHHHHHHhh--cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651         217 RTNRLHESRNIFDTIINN--VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD  294 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~--~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~  294 (334)
                         ...+++..|...+..  ...+++.+.+|.+|+|+..+.-  +.                  ++...+.++..+....
T Consensus        90 ---~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~--r~------------------~~~~~~~~~i~~~~~~  146 (232)
T PF04670_consen   90 ---DYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE--RE------------------EIFRDIQQRIRDELED  146 (232)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH--HH------------------HHHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH--HH------------------HHHHHHHHHHHHHhhh
Confidence               345556666555443  2347889999999999875422  11                  1112222222222111


Q ss_pred             CC-CCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         295 EK-KPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       295 ~~-~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      .. ..+.+|.||.-| ..+.++|..|...++.
T Consensus       147 ~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  147 LGIEDITFFLTSIWD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             TT-TSEEEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred             ccccceEEEeccCcC-cHHHHHHHHHHHHHcc
Confidence            11 258899999999 5888888888776653

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK10218 GTP-binding protein; Provisional

Probab=98.90  E-value=1.4e-08  Score=104.85  Aligned_cols=130  Identities=15%  Similarity=0.189  Sum_probs=88.3

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      -|+......+..++.++.+||++|+..+...|..+++.++++|+|+|.++-           .......++.....    
T Consensus        54 iTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G-----------~~~qt~~~l~~a~~----  118 (607)
T PRK10218         54 ITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDG-----------PMPQTRFVTKKAFA----  118 (607)
T ss_pred             eEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccC-----------ccHHHHHHHHHHHH----
Confidence            344444556677889999999999999999999999999999999999873           23344444444433    


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCc------
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTE------  310 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~------  310 (334)
                      .+.|+++|+||+|+.....   .                  .+.+-+...|..+... ....++++.+||.+|.      
T Consensus       119 ~gip~IVviNKiD~~~a~~---~------------------~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~  177 (607)
T PRK10218        119 YGLKPIVVINKVDRPGARP---D------------------WVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHE  177 (607)
T ss_pred             cCCCEEEEEECcCCCCCch---h------------------HHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCcc
Confidence            4678999999999865432   1                  1111222233222211 1245778999999997      


Q ss_pred             ----hHHHHHHHHHHHH
Q psy3651         311 ----NIKIVFNAVKNTI  323 (334)
Q Consensus       311 ----nI~~vf~~v~~~I  323 (334)
                          ++..+|+.+.+.+
T Consensus       178 ~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        178 DMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             ccccchHHHHHHHHHhC
Confidence                4777777666544

>PRK15494 era GTPase Era; Provisional

Probab=98.89  E-value=1.5e-08  Score=97.83  Aligned_cols=121  Identities=20%  Similarity=0.290  Sum_probs=73.3

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccc-cccc-------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQ-RRKW-------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~-r~kw-------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |.+.....+..++..+.+|||+|+... ...-       ..++.++|++|||+|.++.         .....  ..++..
T Consensus        87 Tr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s---------~~~~~--~~il~~  155 (339)
T PRK15494         87 TRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS---------FDDIT--HNILDK  155 (339)
T ss_pred             ccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC---------CCHHH--HHHHHH
Confidence            334444455667888999999999532 2111       1246899999999997652         01111  123333


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +..    .+.|.+|++||+|+..+.+    .++                 .+++...        .....++.+||+++.
T Consensus       156 l~~----~~~p~IlViNKiDl~~~~~----~~~-----------------~~~l~~~--------~~~~~i~~iSAktg~  202 (339)
T PRK15494        156 LRS----LNIVPIFLLNKIDIESKYL----NDI-----------------KAFLTEN--------HPDSLLFPISALSGK  202 (339)
T ss_pred             HHh----cCCCEEEEEEhhcCccccH----HHH-----------------HHHHHhc--------CCCcEEEEEeccCcc
Confidence            322    2457788999999853211    111                 1121111        112458899999999


Q ss_pred             hHHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNTI  323 (334)
Q Consensus       311 nI~~vf~~v~~~I  323 (334)
                      |++++|+++.+.+
T Consensus       203 gv~eL~~~L~~~l  215 (339)
T PRK15494        203 NIDGLLEYITSKA  215 (339)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999987643

>cd01895 EngA2 EngA2 subfamily

Probab=98.89  E-value=4.7e-08  Score=83.08  Aligned_cols=120  Identities=13%  Similarity=0.276  Sum_probs=75.1

Q ss_pred             EEEEEeeCcceeeeecCCcccccc-----------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRR-----------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~-----------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...+..++..+.+||++|+.....           ....++.+++++|+|+|.++..          . .+...+...+.
T Consensus        42 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~----------~-~~~~~~~~~~~  110 (174)
T cd01895          42 DVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI----------T-EQDLRIAGLIL  110 (174)
T ss_pred             eeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc----------c-hhHHHHHHHHH
Confidence            344555677889999999864311           1123567999999999998751          1 22233333333


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.|+++++||+|+....-    ..              .+.+.+.+.+.+..     .....++.+||+++.|+
T Consensus       111 ~----~~~~~iiv~nK~Dl~~~~~----~~--------------~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i  163 (174)
T cd01895         111 E----EGKALVIVVNKWDLVEKDS----KT--------------MKEFKKEIRRKLPF-----LDYAPIVFISALTGQGV  163 (174)
T ss_pred             h----cCCCEEEEEeccccCCccH----HH--------------HHHHHHHHHhhccc-----ccCCceEEEeccCCCCH
Confidence            2    3579999999999865421    01              11112222222110     12356899999999999


Q ss_pred             HHHHHHHHH
Q psy3651         313 KIVFNAVKN  321 (334)
Q Consensus       313 ~~vf~~v~~  321 (334)
                      .++++++..
T Consensus       164 ~~~~~~l~~  172 (174)
T cd01895         164 DKLFDAIDE  172 (174)
T ss_pred             HHHHHHHHH
Confidence            999998875

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.88  E-value=1.7e-08  Score=103.99  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |+.+....+...+..+.+||++|++.+.+.+..++.++|++|+|+|.++-           .+.++.+.+. ++..   .
T Consensus        37 Tid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G-----------~~~qT~ehl~-il~~---l  101 (581)
T TIGR00475        37 TIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEG-----------VMTQTGEHLA-VLDL---L  101 (581)
T ss_pred             eEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CcHHHHHHHH-HHHH---c
Confidence            44444556677778999999999999999999999999999999999873           2222222222 2221   3


Q ss_pred             CCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         239 NVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       239 ~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      ++| +++++||+|+..+..      +..          ..+.+.+++..    ...  ...+.++.+||++++||.+++.
T Consensus       102 gi~~iIVVlNK~Dlv~~~~------~~~----------~~~ei~~~l~~----~~~--~~~~~ii~vSA~tG~GI~eL~~  159 (581)
T TIGR00475       102 GIPHTIVVITKADRVNEEE------IKR----------TEMFMKQILNS----YIF--LKNAKIFKTSAKTGQGIGELKK  159 (581)
T ss_pred             CCCeEEEEEECCCCCCHHH------HHH----------HHHHHHHHHHH----hCC--CCCCcEEEEeCCCCCCchhHHH
Confidence            566 999999999864321      000          00111112211    110  1246789999999999999999


Q ss_pred             HHHHHHH
Q psy3651         318 AVKNTIL  324 (334)
Q Consensus       318 ~v~~~I~  324 (334)
                      ++.+.+-
T Consensus       160 ~L~~l~~  166 (581)
T TIGR00475       160 ELKNLLE  166 (581)
T ss_pred             HHHHHHH
Confidence            8876553

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.88  E-value=8.4e-09  Score=108.07  Aligned_cols=115  Identities=15%  Similarity=0.147  Sum_probs=78.2

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+|||+|++.+.+.|..++..+|++|+|+|.++-           ...++...+..+.    ..+.|+||++||+|
T Consensus       294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dG-----------v~~QT~E~I~~~k----~~~iPiIVViNKiD  358 (742)
T CHL00189        294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDG-----------VKPQTIEAINYIQ----AANVPIIVAINKID  358 (742)
T ss_pred             ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCC-----------CChhhHHHHHHHH----hcCceEEEEEECCC
Confidence            48899999999999999999999999999999998873           2223333333332    24689999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +.....    ..+..                 .+... ..+.......+.++.+||++|.||.++|+++...
T Consensus       359 l~~~~~----e~v~~-----------------eL~~~-~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l  408 (742)
T CHL00189        359 KANANT----ERIKQ-----------------QLAKY-NLIPEKWGGDTPMIPISASQGTNIDKLLETILLL  408 (742)
T ss_pred             ccccCH----HHHHH-----------------HHHHh-ccchHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence            865321    11111                 01000 0000001134678999999999999999988764

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.88  E-value=1.7e-08  Score=100.68  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=77.3

Q ss_pred             eeEEEEEeeCcceeeeecCCcccccccc--------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         162 ITEFTIVISNIPFLFVDVGGQRSQRRKW--------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       162 i~~~~~~~~~~~~~i~DvgGq~~~r~kw--------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.+..+.+++..+++|||+|++.....+        ..++++++++|+|+|.++.          ....+.  ++..+..
T Consensus       241 ~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~----------~s~~~~--~l~~~~~  308 (442)
T TIGR00450       241 VVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQP----------LTKDDF--LIIDLNK  308 (442)
T ss_pred             EEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CChhHH--HHHHHhh
Confidence            3355667788889999999998654433        3578999999999999985          222222  4444322


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                          .+.|+++|+||+|+....       ...+                      .     +.....++.+||++ .||.
T Consensus       309 ----~~~piIlV~NK~Dl~~~~-------~~~~----------------------~-----~~~~~~~~~vSak~-~gI~  349 (442)
T TIGR00450       309 ----SKKPFILVLNKIDLKINS-------LEFF----------------------V-----SSKVLNSSNLSAKQ-LKIK  349 (442)
T ss_pred             ----CCCCEEEEEECccCCCcc-------hhhh----------------------h-----hhcCCceEEEEEec-CCHH
Confidence                467999999999984321       1110                      0     01123467899997 6999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         314 IVFNAVKNTILHR  326 (334)
Q Consensus       314 ~vf~~v~~~I~~~  326 (334)
                      ++|+.+.+.+.+.
T Consensus       350 ~~~~~L~~~i~~~  362 (442)
T TIGR00450       350 ALVDLLTQKINAF  362 (442)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998877653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.86  E-value=4e-09  Score=85.34  Aligned_cols=81  Identities=19%  Similarity=0.223  Sum_probs=57.7

Q ss_pred             cceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc-CCC
Q psy3651         160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV-IFR  238 (334)
Q Consensus       160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~-~~~  238 (334)
                      ++............+.+||++|+......|...+.+++++|+|+|+++.          ..+.+...++..+.+.. ...
T Consensus        38 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~----------~s~~~~~~~~~~l~~~~~~~~  107 (119)
T PF08477_consen   38 IGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDP----------ESLEYLSQLLKWLKNIRKRDK  107 (119)
T ss_dssp             EEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGH----------HHHHHHHHHHHHHHHHHHHSS
T ss_pred             EEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCCCh----------HHHHHHHHHHHHHHHHHccCC
Confidence            3333333333444599999999998888888889999999999999997          55666544433333221 246


Q ss_pred             CCcEEEEEeCCC
Q psy3651         239 NVSFILFLNKTD  250 (334)
Q Consensus       239 ~~piiL~lNK~D  250 (334)
                      ++|++|++||.|
T Consensus       108 ~~piilv~nK~D  119 (119)
T PF08477_consen  108 NIPIILVGNKSD  119 (119)
T ss_dssp             CSEEEEEEE-TC
T ss_pred             CCCEEEEEeccC
Confidence            699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.86  E-value=1.2e-08  Score=102.08  Aligned_cols=114  Identities=22%  Similarity=0.283  Sum_probs=79.8

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |..+....+.+++.++.+|||+|++....        .-..++.+++++|+|+|.++.          .... ...++..
T Consensus       250 T~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~----------~s~~-~~~~l~~  318 (449)
T PRK05291        250 TRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEP----------LTEE-DDEILEE  318 (449)
T ss_pred             ccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCC----------CChh-HHHHHHh
Confidence            33444566777888999999999975332        123468899999999999986          2222 2333333


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                            ..+.|+++|+||+|+..+.-   . .  .                              .....++.+||+++.
T Consensus       319 ------~~~~piiiV~NK~DL~~~~~---~-~--~------------------------------~~~~~~i~iSAktg~  356 (449)
T PRK05291        319 ------LKDKPVIVVLNKADLTGEID---L-E--E------------------------------ENGKPVIRISAKTGE  356 (449)
T ss_pred             ------cCCCCcEEEEEhhhccccch---h-h--h------------------------------ccCCceEEEEeeCCC
Confidence                  35689999999999854321   0 0  0                              112347889999999


Q ss_pred             hHHHHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNTILH  325 (334)
Q Consensus       311 nI~~vf~~v~~~I~~  325 (334)
                      ||+++++++.+.+..
T Consensus       357 GI~~L~~~L~~~l~~  371 (449)
T PRK05291        357 GIDELREAIKELAFG  371 (449)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987753

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=98.84  E-value=1.2e-08  Score=105.28  Aligned_cols=118  Identities=17%  Similarity=0.111  Sum_probs=80.4

Q ss_pred             cceeEEEEEeeCcceeeeecCCccccccc------ccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         160 KGITEFTIVISNIPFLFVDVGGQRSQRRK------WFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~k------w~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      +......+++++.++++||++|+.+....      +..|+  ++++++++|+|.++.          .+   .+.+..++
T Consensus        29 v~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l----------er---~l~l~~ql   95 (591)
T TIGR00437        29 VEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL----------ER---NLYLTLQL   95 (591)
T ss_pred             EEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc----------hh---hHHHHHHH
Confidence            33444566677888999999999987654      45554  379999999999885          22   23444444


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                      ..    .+.|+++++||+|+.+++-  ...+..                  -+.+         ..++.++.|||++++|
T Consensus        96 ~~----~~~PiIIVlNK~Dl~~~~~--i~~d~~------------------~L~~---------~lg~pvv~tSA~tg~G  142 (591)
T TIGR00437        96 LE----LGIPMILALNLVDEAEKKG--IRIDEE------------------KLEE---------RLGVPVVPTSATEGRG  142 (591)
T ss_pred             Hh----cCCCEEEEEehhHHHHhCC--ChhhHH------------------HHHH---------HcCCCEEEEECCCCCC
Confidence            43    3689999999999865421  010000                  0111         1235689999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTI  323 (334)
Q Consensus       312 I~~vf~~v~~~I  323 (334)
                      ++++|+++.+..
T Consensus       143 i~eL~~~i~~~~  154 (591)
T TIGR00437       143 IERLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=98.83  E-value=1.2e-08  Score=102.61  Aligned_cols=135  Identities=12%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccc----c---ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQ----R---RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~----r---~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      |+..+...+.+++..|.+|||+|....    +   ..+..+++.++++|+|+|+++.+..   .+....+......+...
T Consensus       193 Tl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~---rdp~~d~~~i~~EL~~y  269 (500)
T PRK12296        193 TLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPG---RDPLSDIDALEAELAAY  269 (500)
T ss_pred             cccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccc---cCchhhHHHHHHHHHHh
Confidence            444455556677889999999996421    1   1233456789999999999874100   00011222222222222


Q ss_pred             Hhh-------cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEE
Q psy3651         232 INN-------VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFT  304 (334)
Q Consensus       232 ~~~-------~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~t  304 (334)
                      ...       ..+.+.|+||++||+|+...+-      +.+                 .+...+.      ...+.++.+
T Consensus       270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e------l~e-----------------~l~~~l~------~~g~~Vf~I  320 (500)
T PRK12296        270 APALDGDLGLGDLAERPRLVVLNKIDVPDARE------LAE-----------------FVRPELE------ARGWPVFEV  320 (500)
T ss_pred             hhcccccchhhhhcCCCEEEEEECccchhhHH------HHH-----------------HHHHHHH------HcCCeEEEE
Confidence            211       0245789999999999865321      111                 1111111      124678999


Q ss_pred             eeecCchHHHHHHHHHHHHHH
Q psy3651         305 TAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       305 sA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ||++++|+++++.++.+.+-.
T Consensus       321 SA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        321 SAASREGLRELSFALAELVEE  341 (500)
T ss_pred             ECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999987754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.83  E-value=3.5e-08  Score=82.69  Aligned_cols=107  Identities=20%  Similarity=0.202  Sum_probs=73.7

Q ss_pred             EEEEeeCcceeeeecCCccccccc--------ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         165 FTIVISNIPFLFVDVGGQRSQRRK--------WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       165 ~~~~~~~~~~~i~DvgGq~~~r~k--------w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..+...+.++.+||++|.......        -..++..++++++|+|+++.          ....+. ..+..      
T Consensus        42 ~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~~~~~~-~~~~~------  104 (157)
T cd04164          42 ESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG----------LDEEDL-EILEL------  104 (157)
T ss_pred             EEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CCHHHH-HHHHh------
Confidence            345556778999999998654321        12456799999999999985          222222 22222      


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|+++++||+|+.....  .     .                            .......++.+||+++.|+.+++
T Consensus       105 ~~~~~vi~v~nK~D~~~~~~--~-----~----------------------------~~~~~~~~~~~Sa~~~~~v~~l~  149 (157)
T cd04164         105 PADKPIIVVLNKSDLLPDSE--L-----L----------------------------SLLAGKPIIAISAKTGEGLDELK  149 (157)
T ss_pred             hcCCCEEEEEEchhcCCccc--c-----c----------------------------cccCCCceEEEECCCCCCHHHHH
Confidence            35689999999999866432  1     0                            01234568899999999999999


Q ss_pred             HHHHHHH
Q psy3651         317 NAVKNTI  323 (334)
Q Consensus       317 ~~v~~~I  323 (334)
                      +++.+.+
T Consensus       150 ~~l~~~~  156 (157)
T cd04164         150 EALLELA  156 (157)
T ss_pred             HHHHHhh
Confidence            9988753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK11058 GTPase HflX; Provisional

Probab=98.82  E-value=2.6e-08  Score=98.90  Aligned_cols=120  Identities=19%  Similarity=0.314  Sum_probs=75.2

Q ss_pred             eEEEEEeeCc-ceeeeecCCcccc--cccc------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         163 TEFTIVISNI-PFLFVDVGGQRSQ--RRKW------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       163 ~~~~~~~~~~-~~~i~DvgGq~~~--r~kw------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      ....+.+.+. .+.+|||+|..+.  ...|      ...+.+++++|+|+|.|+.           ...+.+..+..++.
T Consensus       235 ~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~-----------~~~e~l~~v~~iL~  303 (426)
T PRK11058        235 TLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADV-----------RVQENIEAVNTVLE  303 (426)
T ss_pred             ceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCc-----------cHHHHHHHHHHHHH
Confidence            3345555553 7889999998442  2233      3346899999999999985           22333333333333


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .-...+.|+++++||+|+.....  .  .+..                       ..   . ... .++.+||++|.||.
T Consensus       304 el~~~~~pvIiV~NKiDL~~~~~--~--~~~~-----------------------~~---~-~~~-~~v~ISAktG~GId  351 (426)
T PRK11058        304 EIDAHEIPTLLVMNKIDMLDDFE--P--RIDR-----------------------DE---E-NKP-IRVWLSAQTGAGIP  351 (426)
T ss_pred             HhccCCCCEEEEEEcccCCCchh--H--HHHH-----------------------Hh---c-CCC-ceEEEeCCCCCCHH
Confidence            22224689999999999854211  0  0000                       00   0 111 14679999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         314 IVFNAVKNTILH  325 (334)
Q Consensus       314 ~vf~~v~~~I~~  325 (334)
                      ++++++.+.+..
T Consensus       352 eL~e~I~~~l~~  363 (426)
T PRK11058        352 LLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHhhh
Confidence            999999988753

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.80  E-value=3e-08  Score=101.96  Aligned_cols=132  Identities=16%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      .+.+|||+||+.++..|..+++.++++|+|+|+++-.+        ....+++.++.   .    .+.|++|++||+|+.
T Consensus        70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~--------~qt~e~i~~l~---~----~~vpiIVv~NK~Dl~  134 (590)
T TIGR00491        70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFK--------PQTQEALNILR---M----YKTPFVVAANKIDRI  134 (590)
T ss_pred             cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCC--------HhHHHHHHHHH---H----cCCCEEEEEECCCcc
Confidence            48899999999999999999999999999999987310        11123333322   1    368999999999986


Q ss_pred             hhhhccccchhhhhCCCCCCCCc----cHHHHHHHHHHHHHhh--c-------cCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQ----DMQAVQTFLLNYFKAV--K-------RDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~----~~~~~~~fi~~~F~~l--~-------~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      ...-.....++.+.   +.-.+.    +.+.....+...+...  .       ..-...+.+..+||++|+|+.++..++
T Consensus       135 ~~~~~~~~~~f~e~---sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l  211 (590)
T TIGR00491       135 PGWRSHEGRPFMES---FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTML  211 (590)
T ss_pred             chhhhccCchHHHH---HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHH
Confidence            42110011111110   000000    0000001111111111  0       011245789999999999999999988


Q ss_pred             HHH
Q psy3651         320 KNT  322 (334)
Q Consensus       320 ~~~  322 (334)
                      ...
T Consensus       212 ~~l  214 (590)
T TIGR00491       212 AGL  214 (590)
T ss_pred             HHH
Confidence            653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.79  E-value=1.8e-08  Score=100.20  Aligned_cols=131  Identities=12%  Similarity=0.123  Sum_probs=78.2

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+.+....+..++..+.+||++|++.+.+....++.+++++|+|+|.++-+..     ......+.+    .++.. 
T Consensus        69 rg~Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~-----~~~~t~~~~----~~~~~-  138 (426)
T TIGR00483        69 RGVTIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE-----VQPQTREHA----FLART-  138 (426)
T ss_pred             cCceEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc-----cCCchHHHH----HHHHH-
Confidence            34455555667777889999999999988766566667899999999999985210     001111111    11211 


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                       ....|++|++||+|+...    ....+..          ..+++.++++    ... .....+.++.+||+++.||.+.
T Consensus       139 -~~~~~iIVviNK~Dl~~~----~~~~~~~----------~~~ei~~~~~----~~g-~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       139 -LGINQLIVAINKMDSVNY----DEEEFEA----------IKKEVSNLIK----KVG-YNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             -cCCCeEEEEEEChhccCc----cHHHHHH----------HHHHHHHHHH----HcC-CCcccceEEEeecccccccccc
Confidence             233589999999998531    0101110          0111122221    111 1123578899999999999874


Q ss_pred             H
Q psy3651         316 F  316 (334)
Q Consensus       316 f  316 (334)
                      +
T Consensus       199 ~  199 (426)
T TIGR00483       199 S  199 (426)
T ss_pred             c
Confidence            4

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=98.79  E-value=4.4e-08  Score=97.03  Aligned_cols=121  Identities=14%  Similarity=0.202  Sum_probs=75.6

Q ss_pred             EEEee-CcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh-hcC
Q psy3651         166 TIVIS-NIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN-NVI  236 (334)
Q Consensus       166 ~~~~~-~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~-~~~  236 (334)
                      .+.+. +..+.+||++|.....       ..|..+.+.++++|+|+|+++.+.       .+.+.+...+.+++.. ++.
T Consensus       199 ~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~-------~dp~e~~~~i~~EL~~y~~~  271 (424)
T PRK12297        199 VVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEG-------RDPIEDYEKINKELKLYNPR  271 (424)
T ss_pred             EEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCcccc-------CChHHHHHHHHHHHhhhchh
Confidence            34445 6889999999975311       223344567999999999987521       0222332333333332 233


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      +.+.|++|++||+||....     ..+..                 + .+.   +      ...++.+||++++|+++++
T Consensus       272 L~~kP~IVV~NK~DL~~~~-----e~l~~-----------------l-~~~---l------~~~i~~iSA~tgeGI~eL~  319 (424)
T PRK12297        272 LLERPQIVVANKMDLPEAE-----ENLEE-----------------F-KEK---L------GPKVFPISALTGQGLDELL  319 (424)
T ss_pred             ccCCcEEEEEeCCCCcCCH-----HHHHH-----------------H-HHH---h------CCcEEEEeCCCCCCHHHHH
Confidence            4578999999999973211     01111                 1 111   1      1457899999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      +++.+.+.+
T Consensus       320 ~~L~~~l~~  328 (424)
T PRK12297        320 YAVAELLEE  328 (424)
T ss_pred             HHHHHHHHh
Confidence            999887654

>cd00880 Era_like Era (E

Probab=98.79  E-value=6.1e-08  Score=80.28  Aligned_cols=120  Identities=21%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             eEEEEEee-CcceeeeecCCcccccc-------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         163 TEFTIVIS-NIPFLFVDVGGQRSQRR-------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       163 ~~~~~~~~-~~~~~i~DvgGq~~~r~-------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ....+... +..+.+||++|+.....       .+..++.++++++||+|.++..          ...... ++....  
T Consensus        35 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~----------~~~~~~-~~~~~~--  101 (163)
T cd00880          35 VEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRA----------DEEEEK-LLELLR--  101 (163)
T ss_pred             eEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCC----------CHHHHH-HHHHHH--
Confidence            33344443 67899999999887653       3445789999999999999962          222221 222222  


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                        ..+.|+++++||.|+....-      +..                 .+.  .............++.+||.++.|+.+
T Consensus       102 --~~~~~~ivv~nK~D~~~~~~------~~~-----------------~~~--~~~~~~~~~~~~~~~~~sa~~~~~v~~  154 (163)
T cd00880         102 --ERGKPVLLVLNKIDLLPEEE------EEE-----------------LLE--LRLLILLLLLGLPVIAVSALTGEGIDE  154 (163)
T ss_pred             --hcCCeEEEEEEccccCChhh------HHH-----------------HHH--HHHhhcccccCCceEEEeeeccCCHHH
Confidence              25789999999999865311      111                 000  000111112456789999999999999


Q ss_pred             HHHHHHHH
Q psy3651         315 VFNAVKNT  322 (334)
Q Consensus       315 vf~~v~~~  322 (334)
                      +++++.+.
T Consensus       155 l~~~l~~~  162 (163)
T cd00880         155 LREALIEA  162 (163)
T ss_pred             HHHHHHhh
Confidence            99988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=98.77  E-value=3.3e-08  Score=85.00  Aligned_cols=105  Identities=13%  Similarity=0.202  Sum_probs=69.0

Q ss_pred             eeecCCcccccccccc----cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         176 FVDVGGQRSQRRKWFQ----CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       176 i~DvgGq~~~r~kw~~----~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +||++|+...+..|..    .+.+++++|+|+|.++.++.         +..   ++..+     ..+.|+++++||+|+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~---------~~~---~~~~~-----~~~~~ii~v~nK~Dl  103 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESR---------LPA---GLLDI-----GVSKRQIAVISKTDM  103 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccc---------cCH---HHHhc-----cCCCCeEEEEEcccc
Confidence            7999999655555543    36899999999999986322         111   11111     135799999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      .....                     +.+.+++.+.        .-..++++|||++++||.++|+.+.+.+.+.
T Consensus       104 ~~~~~---------------------~~~~~~~~~~--------~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        104 PDADV---------------------AATRKLLLET--------GFEEPIFELNSHDPQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             CcccH---------------------HHHHHHHHHc--------CCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence            43211                     1111122211        1124689999999999999999998876543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.73  E-value=1.7e-07  Score=93.21  Aligned_cols=121  Identities=13%  Similarity=0.206  Sum_probs=79.7

Q ss_pred             EEEEeeCcceeeeecCCcccccccc-----------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         165 FTIVISNIPFLFVDVGGQRSQRRKW-----------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       165 ~~~~~~~~~~~i~DvgGq~~~r~kw-----------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      ..+..++..+.+|||+|.+...+.+           ..+++.+|++|+|+|.++.           -......++..+..
T Consensus       214 ~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~-----------~~~~~~~i~~~~~~  282 (435)
T PRK00093        214 TPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEG-----------ITEQDLRIAGLALE  282 (435)
T ss_pred             EEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCC-----------CCHHHHHHHHHHHH
Confidence            3445577889999999987654432           2356789999999999874           12223344444433


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                          .+.|+++++||+|+..+..   .                 +...+.+...+..     ...++++++||+++.||.
T Consensus       283 ----~~~~~ivv~NK~Dl~~~~~---~-----------------~~~~~~~~~~l~~-----~~~~~i~~~SA~~~~gv~  333 (435)
T PRK00093        283 ----AGRALVIVVNKWDLVDEKT---M-----------------EEFKKELRRRLPF-----LDYAPIVFISALTGQGVD  333 (435)
T ss_pred             ----cCCcEEEEEECccCCCHHH---H-----------------HHHHHHHHHhccc-----ccCCCEEEEeCCCCCCHH
Confidence                4579999999999864321   0                 1111223322211     134678999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         314 IVFNAVKNTILH  325 (334)
Q Consensus       314 ~vf~~v~~~I~~  325 (334)
                      ++|+.+.+....
T Consensus       334 ~l~~~i~~~~~~  345 (435)
T PRK00093        334 KLLEAIDEAYEN  345 (435)
T ss_pred             HHHHHHHHHHHH
Confidence            999998875543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.72  E-value=6.1e-08  Score=96.36  Aligned_cols=109  Identities=22%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             EEEEEeeCcceeeeecCCccc--------ccccccccccCCCeEEEEEeCCCccchhhcccccccHH-HHHHHHHHHHhh
Q psy3651         164 EFTIVISNIPFLFVDVGGQRS--------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH-ESRNIFDTIINN  234 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~--------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~-esl~lf~~i~~~  234 (334)
                      ...+.+.+..+.+|||+|+..        .+..+..++.++|++|||+|.++..         .... +...++..    
T Consensus        41 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~---------~~~~~~~~~~l~~----  107 (435)
T PRK00093         41 YGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL---------TPADEEIAKILRK----  107 (435)
T ss_pred             EEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC---------CHHHHHHHHHHHH----
Confidence            445566778999999999987        3444567789999999999998731         1111 11222221    


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIK  313 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~  313 (334)
                         .+.|++|++||+|+....     ..+.+                 +     ..+      .+ .++.+||+++.||.
T Consensus       108 ---~~~piilv~NK~D~~~~~-----~~~~~-----------------~-----~~l------g~~~~~~iSa~~g~gv~  151 (435)
T PRK00093        108 ---SNKPVILVVNKVDGPDEE-----ADAYE-----------------F-----YSL------GLGEPYPISAEHGRGIG  151 (435)
T ss_pred             ---cCCcEEEEEECccCccch-----hhHHH-----------------H-----Hhc------CCCCCEEEEeeCCCCHH
Confidence               268999999999964311     01111                 1     111      11 25789999999999


Q ss_pred             HHHHHHHH
Q psy3651         314 IVFNAVKN  321 (334)
Q Consensus       314 ~vf~~v~~  321 (334)
                      ++|+++..
T Consensus       152 ~l~~~I~~  159 (435)
T PRK00093        152 DLLDAILE  159 (435)
T ss_pred             HHHHHHHh
Confidence            99998876

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.72  E-value=1e-07  Score=100.51  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=79.4

Q ss_pred             EEEEEeeCcceeeeecCCccc-ccccc----------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRS-QRRKW----------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~-~r~kw----------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...+.+++..+.+|||+|++. .+..|          ..+++.++++|+|+|.++.          .. .+.+.++..+.
T Consensus       490 ~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~----------~s-~~~~~i~~~~~  558 (712)
T PRK09518        490 DEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQP----------IS-EQDLKVMSMAV  558 (712)
T ss_pred             eeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCC----------CC-HHHHHHHHHHH
Confidence            345566788899999999763 23333          2346789999999999985          22 22344555554


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.|++||+||+|+..+..   ...+.                 +.+...|..     ......+++||+++.||
T Consensus       559 ~----~~~piIiV~NK~DL~~~~~---~~~~~-----------------~~~~~~l~~-----~~~~~ii~iSAktg~gv  609 (712)
T PRK09518        559 D----AGRALVLVFNKWDLMDEFR---RQRLE-----------------RLWKTEFDR-----VTWARRVNLSAKTGWHT  609 (712)
T ss_pred             H----cCCCEEEEEEchhcCChhH---HHHHH-----------------HHHHHhccC-----CCCCCEEEEECCCCCCH
Confidence            3    4689999999999864311   00111                 111111111     12245688999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILH  325 (334)
Q Consensus       313 ~~vf~~v~~~I~~  325 (334)
                      .++|+.+.+...+
T Consensus       610 ~~L~~~i~~~~~~  622 (712)
T PRK09518        610 NRLAPAMQEALES  622 (712)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999887765

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.72  E-value=5.9e-08  Score=87.11  Aligned_cols=84  Identities=17%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +.-|+......+..++.++.+|||+|++.+...+...+..++++|+|+|.++-           ...+....+. ++.. 
T Consensus        61 rg~T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~-----------~~~~~~~~~~-~~~~-  127 (208)
T cd04166          61 QGITIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKG-----------VLEQTRRHSY-ILSL-  127 (208)
T ss_pred             CCcCeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC-----------ccHhHHHHHH-HHHH-
Confidence            44455555667777889999999999988777778888999999999999873           1112222222 1221 


Q ss_pred             CCCCCcEEEEEeCCCcch
Q psy3651         236 IFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~  253 (334)
                       ....++|+++||+|+..
T Consensus       128 -~~~~~iIvviNK~D~~~  144 (208)
T cd04166         128 -LGIRHVVVAVNKMDLVD  144 (208)
T ss_pred             -cCCCcEEEEEEchhccc
Confidence             12245888999999853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK13351 elongation factor G; Reviewed

Probab=98.72  E-value=7.5e-08  Score=101.26  Aligned_cols=93  Identities=12%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      .+|.|.+    +.+..|++.....+..++..+.+|||+|+..+...|..+++.++++|+|+|.++-.          . .
T Consensus        48 ~d~~~~e----~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~----------~-~  112 (687)
T PRK13351         48 TDWMPQE----QERGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV----------Q-P  112 (687)
T ss_pred             CCCCHHH----HhcCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC----------C-H
Confidence            4555533    45677888777888888999999999999999999999999999999999998852          1 2


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      +....|..+..    .+.|+++|+||+|+...
T Consensus       113 ~~~~~~~~~~~----~~~p~iiviNK~D~~~~  140 (687)
T PRK13351        113 QTETVWRQADR----YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHh----cCCCEEEEEECCCCCCC
Confidence            23445544433    36899999999998864

>TIGR00436 era GTP-binding protein Era

Probab=98.70  E-value=1e-07  Score=89.10  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=69.9

Q ss_pred             eCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651         170 SNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS  241 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p  241 (334)
                      ++..+.+|||+|+...+.        .+..+++++|+++||+|.++.          ....  ..+++.+ ..   .+.|
T Consensus        46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~----------~~~~--~~i~~~l-~~---~~~p  109 (270)
T TIGR00436        46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQW----------NGDG--EFVLTKL-QN---LKRP  109 (270)
T ss_pred             CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CchH--HHHHHHH-Hh---cCCC
Confidence            456789999999865422        234567899999999999885          2222  1222222 22   3579


Q ss_pred             EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         242 FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       242 iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      +++++||+|+.....      +...                 +. .+....   . ...++.+||+++.|++++++++.+
T Consensus       110 ~ilV~NK~Dl~~~~~------~~~~-----------------~~-~~~~~~---~-~~~v~~iSA~~g~gi~~L~~~l~~  161 (270)
T TIGR00436       110 VVLTRNKLDNKFKDK------LLPL-----------------ID-KYAILE---D-FKDIVPISALTGDNTSFLAAFIEV  161 (270)
T ss_pred             EEEEEECeeCCCHHH------HHHH-----------------HH-HHHhhc---C-CCceEEEecCCCCCHHHHHHHHHH
Confidence            999999999853211      1110                 00 011110   1 115789999999999999999877


Q ss_pred             HH
Q psy3651         322 TI  323 (334)
Q Consensus       322 ~I  323 (334)
                      .+
T Consensus       162 ~l  163 (270)
T TIGR00436       162 HL  163 (270)
T ss_pred             hC
Confidence            54

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG4423|consensus

Probab=98.69  E-value=2.1e-08  Score=87.21  Aligned_cols=120  Identities=13%  Similarity=0.093  Sum_probs=86.1

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH---hhcCCCCCcEEEEEeC
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII---NNVIFRNVSFILFLNK  248 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~---~~~~~~~~piiL~lNK  248 (334)
                      +++++||++||+++..+..-||+.+++...|+|+|..          -.++-...|-+.+.   +-|.-...|+++..||
T Consensus        75 vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s----------~tfe~~skwkqdldsk~qLpng~Pv~~vllank  144 (229)
T KOG4423|consen   75 VRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRS----------LTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANK  144 (229)
T ss_pred             HHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccc----------ccccHHHHHHHhccCcccCCCCCcchheeccch
Confidence            6889999999999999999999999999999999986          34444444444443   3345556789999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ||....-+  ...  .                     .+|.+..+. +.-...++|||+...||.++-+.+++.|+.+.
T Consensus       145 Cd~e~~a~--~~~--~---------------------~~~d~f~ke-ngf~gwtets~Kenkni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  145 CDQEKSAK--NEA--T---------------------RQFDNFKKE-NGFEGWTETSAKENKNIPEAQRELVEKILVND  197 (229)
T ss_pred             hccChHhh--hhh--H---------------------HHHHHHHhc-cCccceeeeccccccChhHHHHHHHHHHHhhc
Confidence            99754322  110  0                     111121111 12234789999999999999999999988654

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.68  E-value=9.5e-08  Score=94.94  Aligned_cols=132  Identities=14%  Similarity=0.147  Sum_probs=78.5

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.+..|+.+....++.++.++.+|||+|++.+.+.......+++++|+|+|.++....      .....+.+.+    +.
T Consensus        66 r~rG~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~------~~~~~~~~~~----~~  135 (425)
T PRK12317         66 RERGVTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV------MPQTREHVFL----AR  135 (425)
T ss_pred             hhcCccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC------CcchHHHHHH----HH
Confidence            3455677777778888899999999999977655444556789999999999862000      0111222222    11


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .  ....|+++++||+|+....    ...+              +...+-+.+.+....- ....+.++.+||+++.||.
T Consensus       136 ~--~~~~~iivviNK~Dl~~~~----~~~~--------------~~~~~~i~~~l~~~g~-~~~~~~ii~iSA~~g~gi~  194 (425)
T PRK12317        136 T--LGINQLIVAINKMDAVNYD----EKRY--------------EEVKEEVSKLLKMVGY-KPDDIPFIPVSAFEGDNVV  194 (425)
T ss_pred             H--cCCCeEEEEEEcccccccc----HHHH--------------HHHHHHHHHHHHhhCC-CcCcceEEEeecccCCCcc
Confidence            1  1224799999999986411    0000              1111122222211111 1134678999999999998


Q ss_pred             HHH
Q psy3651         314 IVF  316 (334)
Q Consensus       314 ~vf  316 (334)
                      +.+
T Consensus       195 ~~~  197 (425)
T PRK12317        195 KKS  197 (425)
T ss_pred             ccc
Confidence            744

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.66  E-value=1.3e-07  Score=96.31  Aligned_cols=84  Identities=14%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .|..|+......+.+++.++.+|||+|+..+......+++.++++|+|+|.++-           -......+|+.. . 
T Consensus        62 ~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~~~-~-  128 (526)
T PRK00741         62 QRGISVTSSVMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG-----------VEPQTRKLMEVC-R-  128 (526)
T ss_pred             hhCCceeeeeEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC-----------CCHHHHHHHHHH-H-
Confidence            344555555677888899999999999998888777789999999999999873           112233444332 2 


Q ss_pred             cCCCCCcEEEEEeCCCcch
Q psy3651         235 VIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~  253 (334)
                        ..++|+++|+||+|+..
T Consensus       129 --~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741        129 --LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             --hcCCCEEEEEECCcccc
Confidence              25789999999999865

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.64  E-value=5.1e-07  Score=84.52  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      -+|.|-+    +.|.-|+......+..++.++.+|||+|+..+..-|..+++.++++|+|+|.++--           ..
T Consensus        39 ~D~~~~E----~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-----------~~  103 (270)
T cd01886          39 MDFMEQE----RERGITIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-----------EP  103 (270)
T ss_pred             cCCCccc----cCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-----------CH
Confidence            4555543    34555666667788889999999999999999889999999999999999998741           12


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      ....+++.+..    .+.|+++|+||+|+..
T Consensus       104 ~t~~~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886         104 QTETVWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            23344444432    4579999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.63  E-value=1.3e-07  Score=99.71  Aligned_cols=111  Identities=15%  Similarity=0.139  Sum_probs=72.3

Q ss_pred             EeeCcceeeeecCCccc--------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651         168 VISNIPFLFVDVGGQRS--------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN  239 (334)
Q Consensus       168 ~~~~~~~~i~DvgGq~~--------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~  239 (334)
                      ...+..+.+|||||+..        .+..+..+++++|++|||+|.++.-         ....+  .+.+.+ ..   .+
T Consensus       319 ~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~---------~~~d~--~i~~~L-r~---~~  383 (712)
T PRK09518        319 EWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGL---------TSTDE--RIVRML-RR---AG  383 (712)
T ss_pred             EECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCC---------CHHHH--HHHHHH-Hh---cC
Confidence            44567899999999874        2344556789999999999997620         11111  222222 21   56


Q ss_pred             CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      .|++|++||+|+.....     ...                      .|..+.   -.  ..+++||+++.||.++|+++
T Consensus       384 ~pvIlV~NK~D~~~~~~-----~~~----------------------~~~~lg---~~--~~~~iSA~~g~GI~eLl~~i  431 (712)
T PRK09518        384 KPVVLAVNKIDDQASEY-----DAA----------------------EFWKLG---LG--EPYPISAMHGRGVGDLLDEA  431 (712)
T ss_pred             CCEEEEEECcccccchh-----hHH----------------------HHHHcC---CC--CeEEEECCCCCCchHHHHHH
Confidence            89999999999753210     011                      111111   01  13689999999999999999


Q ss_pred             HHHHHH
Q psy3651         320 KNTILH  325 (334)
Q Consensus       320 ~~~I~~  325 (334)
                      .+.+..
T Consensus       432 ~~~l~~  437 (712)
T PRK09518        432 LDSLKV  437 (712)
T ss_pred             HHhccc
Confidence            987754

>KOG0090|consensus

Probab=98.63  E-value=2.6e-07  Score=82.20  Aligned_cols=144  Identities=18%  Similarity=0.244  Sum_probs=91.8

Q ss_pred             cceeEEEEEeeCcceeeeecCCccccccccccccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH-Hhhc
Q psy3651         160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI-INNV  235 (334)
Q Consensus       160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i-~~~~  235 (334)
                      +--++..+..++-..+++|++|+.+-|.+-..||.   .+.+||||||...++         ....+.-+.+-.+ .++.
T Consensus        70 iepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~---------k~vrdvaefLydil~~~~  140 (238)
T KOG0090|consen   70 IEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL---------KNVRDVAEFLYDILLDSR  140 (238)
T ss_pred             eccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc---------hhhHHHHHHHHHHHHhhc
Confidence            33455667777778999999999999999999998   799999999999984         3345555554444 4443


Q ss_pred             -CCCCCcEEEEEeCCCcchhhhccccchhhhhC-------------------CCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651         236 -IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHF-------------------PEFEGDPQDMQAVQTFLLNYFKAVKRDE  295 (334)
Q Consensus       236 -~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~F-------------------p~y~g~~~~~~~~~~fi~~~F~~l~~~~  295 (334)
                       .-..+|++|.+||+|++.+|-   ..-+++..                   .++..+....+...+|   +|.++   .
T Consensus       141 ~~~~~~~vLIaCNKqDl~tAkt---~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF---~fs~l---~  211 (238)
T KOG0090|consen  141 VKKNKPPVLIACNKQDLFTAKT---AEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDF---KFSHL---E  211 (238)
T ss_pred             cccCCCCEEEEecchhhhhcCc---HHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccc---chhhc---c
Confidence             345679999999999987542   11111110                   0111111111111110   11111   1


Q ss_pred             CCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         296 KKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ...+.+-++|++++ +|.+.-+|+.+.
T Consensus       212 ~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  212 DQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cceeEEeecccCcC-ChHHHHHHHHHh
Confidence            24577888999988 899999998764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.63  E-value=1.5e-07  Score=93.25  Aligned_cols=114  Identities=21%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             EEEEEeeCcceeeeecCCc--------ccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         164 EFTIVISNIPFLFVDVGGQ--------RSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq--------~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ...+..++..+.+|||+|.        +..+..+..+++++++||||+|.++.           -......+.+. +.. 
T Consensus        39 ~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~-----------~~~~d~~i~~~-l~~-  105 (429)
T TIGR03594        39 YGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREG-----------LTPEDEEIAKW-LRK-  105 (429)
T ss_pred             EEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCC-----------CCHHHHHHHHH-HHH-
Confidence            3455567788999999996        33445567788999999999998873           11111222222 221 


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                        .+.|+++++||+|+.....  .   ..+                      |..+.     --.++.+||+.+.|+.++
T Consensus       106 --~~~piilVvNK~D~~~~~~--~---~~~----------------------~~~lg-----~~~~~~vSa~~g~gv~~l  151 (429)
T TIGR03594       106 --SGKPVILVANKIDGKKEDA--V---AAE----------------------FYSLG-----FGEPIPISAEHGRGIGDL  151 (429)
T ss_pred             --hCCCEEEEEECccCCcccc--c---HHH----------------------HHhcC-----CCCeEEEeCCcCCChHHH
Confidence              3579999999999865321  0   000                      11111     114789999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         316 FNAVKNTIL  324 (334)
Q Consensus       316 f~~v~~~I~  324 (334)
                      ++++.+.+-
T Consensus       152 l~~i~~~l~  160 (429)
T TIGR03594       152 LDAILELLP  160 (429)
T ss_pred             HHHHHHhcC
Confidence            999887663

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.58  E-value=8.7e-07  Score=77.79  Aligned_cols=112  Identities=13%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             CcceeeeecCCcc----------cccccccccccC---CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         171 NIPFLFVDVGGQR----------SQRRKWFQCFDS---VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       171 ~~~~~i~DvgGq~----------~~r~kw~~~f~~---v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      +..+.+||++|..          ..+.....++..   ++++++|+|.+....         ...  ..+. ..+..   
T Consensus        69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~---------~~~--~~i~-~~l~~---  133 (196)
T PRK00454         69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK---------ELD--LQMI-EWLKE---  133 (196)
T ss_pred             CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC---------HHH--HHHH-HHHHH---
Confidence            4789999999953          222333455554   467889998776311         111  1111 12221   


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|+++++||+|+....-      .              +...+.+...+..      ....++.|||+++.|++++|+
T Consensus       134 ~~~~~iiv~nK~Dl~~~~~------~--------------~~~~~~i~~~l~~------~~~~~~~~Sa~~~~gi~~l~~  187 (196)
T PRK00454        134 YGIPVLIVLTKADKLKKGE------R--------------KKQLKKVRKALKF------GDDEVILFSSLKKQGIDELRA  187 (196)
T ss_pred             cCCcEEEEEECcccCCHHH------H--------------HHHHHHHHHHHHh------cCCceEEEEcCCCCCHHHHHH
Confidence            3578999999999865311      0              0011112222111      134577999999999999999


Q ss_pred             HHHHHH
Q psy3651         318 AVKNTI  323 (334)
Q Consensus       318 ~v~~~I  323 (334)
                      .+.+.+
T Consensus       188 ~i~~~~  193 (196)
T PRK00454        188 AIAKWL  193 (196)
T ss_pred             HHHHHh
Confidence            887654

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.54  E-value=8.1e-07  Score=82.81  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=64.7

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .+..|+......+..++..+.+||++|+..+...|..++..++++|+|+|.++..           .......|+.+.. 
T Consensus        47 ~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~-----------~~~~~~~~~~~~~-  114 (268)
T cd04170          47 KRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGV-----------EVGTEKLWEFADE-  114 (268)
T ss_pred             hhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC-----------CHHHHHHHHHHHH-
Confidence            3455666666777788899999999999888888999999999999999999852           1233344444322 


Q ss_pred             cCCCCCcEEEEEeCCCcchh
Q psy3651         235 VIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~e  254 (334)
                         .+.|+++|+||+|+...
T Consensus       115 ---~~~p~iivvNK~D~~~~  131 (268)
T cd04170         115 ---AGIPRIIFINKMDRERA  131 (268)
T ss_pred             ---cCCCEEEEEECCccCCC
Confidence               46799999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.54  E-value=6.7e-07  Score=87.94  Aligned_cols=132  Identities=15%  Similarity=0.167  Sum_probs=80.2

Q ss_pred             eeeecceeEEEEEeeC-cceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         156 RKATKGITEFTIVISN-IPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      +.|..|+    +...+ ..+.++|++|...-.       .....+++.+++++||+|++..|..       ..+.+...+
T Consensus       194 ~~p~~Gi----v~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~-------d~~e~~~~l  262 (390)
T PRK12298        194 LVPNLGV----VRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS-------DPVENARII  262 (390)
T ss_pred             cCcEEEE----EEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc-------ChHHHHHHH
Confidence            4455554    33443 569999999986422       1223357899999999999854210       233443444


Q ss_pred             HHHHHh-hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651         228 FDTIIN-NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA  306 (334)
Q Consensus       228 f~~i~~-~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA  306 (334)
                      .+++.. .+.+.+.|++|++||+|+..+..      +.+                 .+.. +...  . .....++.+||
T Consensus       263 ~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e------l~~-----------------~l~~-l~~~--~-~~~~~Vi~ISA  315 (390)
T PRK12298        263 INELEKYSPKLAEKPRWLVFNKIDLLDEEE------AEE-----------------RAKA-IVEA--L-GWEGPVYLISA  315 (390)
T ss_pred             HHHHHhhhhhhcCCCEEEEEeCCccCChHH------HHH-----------------HHHH-HHHH--h-CCCCCEEEEEC
Confidence            444443 23345789999999999864321      111                 1111 0110  0 11124688999


Q ss_pred             ecCchHHHHHHHHHHHHHH
Q psy3651         307 VDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       307 ~d~~nI~~vf~~v~~~I~~  325 (334)
                      +++.+|.+++++|.+.+..
T Consensus       316 ~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        316 ASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             CCCcCHHHHHHHHHHHhhh
Confidence            9999999999999887654

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.53  E-value=1e-06  Score=80.17  Aligned_cols=68  Identities=16%  Similarity=0.200  Sum_probs=54.6

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+|||+|+..+......+++.++++|+|+|.++-           ...+...++.....    .+.|++|++||+|
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g-----------~~~~t~~~l~~~~~----~~~p~ilviNKiD  136 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG-----------VCVQTETVLRQALK----ERVKPVLVINKID  136 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC-----------CCHHHHHHHHHHHH----cCCCEEEEEECCC
Confidence            67899999999999988888899999999999999873           23344555555443    3579999999999


Q ss_pred             cch
Q psy3651         251 LLA  253 (334)
Q Consensus       251 l~~  253 (334)
                      +..
T Consensus       137 ~~~  139 (222)
T cd01885         137 RLI  139 (222)
T ss_pred             cch
Confidence            863

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.53  E-value=2.5e-07  Score=91.49  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=76.7

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+||++|++.+.+.|......+|++|+|+|.++-.       ......+.+.++    ..  ....|+++++||+|
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~-------~~~qt~e~l~~l----~~--~gi~~iIVvvNK~D  145 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTKEHLMAL----EI--IGIKNIVIVQNKID  145 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCc-------cccchHHHHHHH----HH--cCCCeEEEEEEccc
Confidence            467899999999999999998889999999999999731       002223333332    11  22347999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +....-  ....+              +...+++...       ....+.++.+||+++.|+..+++++...+
T Consensus       146 l~~~~~--~~~~~--------------~~i~~~l~~~-------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       146 LVSKEK--ALENY--------------EEIKEFVKGT-------VAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             cCCHHH--HHHHH--------------HHHHhhhhhc-------ccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            864311  00000              1111111111       01346789999999999999999988754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.51  E-value=7.8e-07  Score=81.47  Aligned_cols=50  Identities=10%  Similarity=0.113  Sum_probs=37.6

Q ss_pred             cceeEEEEEeeCcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCcc
Q psy3651         160 KGITEFTIVISNIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      .......+.+++..+++||++|+....       +.+..++++++++++|+|+++.+
T Consensus        35 ~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~   91 (233)
T cd01896          35 LTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPE   91 (233)
T ss_pred             ccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcch
Confidence            334445566788999999999985432       23456899999999999998764

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.51  E-value=1.3e-06  Score=77.82  Aligned_cols=124  Identities=15%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .|..|+......++.++..+.+.||+|...+.+-.......+|++|+|+|.+.-           -.......+..+.. 
T Consensus        48 ~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~-  115 (195)
T cd01884          48 ARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDG-----------PMPQTREHLLLARQ-  115 (195)
T ss_pred             hcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH-
Confidence            344455555556666788899999999987655555667789999999998762           12223333443332 


Q ss_pred             cCCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         235 VIFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       235 ~~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                         .+.| +|+++||+|+..+.   .   .             .+...+.+++.+..+... ...++++++||.+|.|+.
T Consensus       116 ---~~~~~iIvviNK~D~~~~~---~---~-------------~~~~~~~i~~~l~~~g~~-~~~v~iipiSa~~g~n~~  172 (195)
T cd01884         116 ---VGVPYIVVFLNKADMVDDE---E---L-------------LELVEMEVRELLSKYGFD-GDNTPIVRGSALKALEGD  172 (195)
T ss_pred             ---cCCCcEEEEEeCCCCCCcH---H---H-------------HHHHHHHHHHHHHHhccc-ccCCeEEEeeCccccCCC
Confidence               2355 88999999985321   0   0             111222344433333221 245889999999999864

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04163 Era Era subfamily

Probab=98.50  E-value=1.1e-06  Score=73.80  Aligned_cols=113  Identities=21%  Similarity=0.279  Sum_probs=70.8

Q ss_pred             EeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651         168 VISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN  239 (334)
Q Consensus       168 ~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~  239 (334)
                      ...+..+.+||++|......        .+.+++.+++++++|+|.++...        ...   ..+...+..    .+
T Consensus        47 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~--------~~~---~~~~~~~~~----~~  111 (168)
T cd04163          47 TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG--------EGD---EFILELLKK----SK  111 (168)
T ss_pred             EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC--------chH---HHHHHHHHH----hC
Confidence            33457899999999865432        33456789999999999998510        111   122222222    25


Q ss_pred             CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      .|+++++||+|+....-     .+.+                 .+ ..+..    ......++.+||+++.+++++++++
T Consensus       112 ~~~iiv~nK~Dl~~~~~-----~~~~-----------------~~-~~~~~----~~~~~~~~~~s~~~~~~~~~l~~~l  164 (168)
T cd04163         112 TPVILVLNKIDLVKDKE-----DLLP-----------------LL-EKLKE----LGPFAEIFPISALKGENVDELLEEI  164 (168)
T ss_pred             CCEEEEEEchhccccHH-----HHHH-----------------HH-HHHHh----ccCCCceEEEEeccCCChHHHHHHH
Confidence            79999999999863210     0111                 11 11111    1123457899999999999999998


Q ss_pred             HHH
Q psy3651         320 KNT  322 (334)
Q Consensus       320 ~~~  322 (334)
                      .+.
T Consensus       165 ~~~  167 (168)
T cd04163         165 VKY  167 (168)
T ss_pred             Hhh
Confidence            764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd04169 RF3 RF3 subfamily

Probab=98.49  E-value=2.7e-07  Score=86.28  Aligned_cols=85  Identities=15%  Similarity=0.287  Sum_probs=63.7

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.|..|+......+..++.++.+|||+|+..+...+..+++.++++|+|+|.++--           ......+++.. .
T Consensus        53 ~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~-----------~~~~~~i~~~~-~  120 (267)
T cd04169          53 KQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV-----------EPQTRKLFEVC-R  120 (267)
T ss_pred             HhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc-----------cHHHHHHHHHH-H
Confidence            34555666677788889999999999999988877777899999999999998731           11222334332 2


Q ss_pred             hcCCCCCcEEEEEeCCCcch
Q psy3651         234 NVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~  253 (334)
                         ..+.|+++|+||+|+..
T Consensus       121 ---~~~~P~iivvNK~D~~~  137 (267)
T cd04169         121 ---LRGIPIITFINKLDREG  137 (267)
T ss_pred             ---hcCCCEEEEEECCccCC
Confidence               14689999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.49  E-value=1.3e-06  Score=90.23  Aligned_cols=64  Identities=17%  Similarity=0.222  Sum_probs=48.8

Q ss_pred             eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      +.+|||+|++.++..|...+..++++|+|+|.++-           ...++...+..+..    .+.|+++++||+|+.
T Consensus        73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-----------~~~qt~e~i~~~~~----~~vpiIvviNK~D~~  136 (586)
T PRK04004         73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEG-----------FQPQTIEAINILKR----RKTPFVVAANKIDRI  136 (586)
T ss_pred             EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-----------CCHhHHHHHHHHHH----cCCCEEEEEECcCCc
Confidence            78999999999999999999999999999999872           11222222222211    468999999999985

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.49  E-value=1.2e-06  Score=90.94  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             eeecceeEEEEEe-eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         157 KATKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       157 ~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..|+.+....+.. ++..+.+|||+|++.+-+.-...+.++|++++|+|..+-           .+....+.+. ++.. 
T Consensus        35 GiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg-----------~~~qT~ehl~-il~~-  101 (614)
T PRK10512         35 GMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDG-----------VMAQTREHLA-ILQL-  101 (614)
T ss_pred             CceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCC-----------CcHHHHHHHH-HHHH-
Confidence            4444443334433 356789999999998866666778899999999998862           2333333332 2222 


Q ss_pred             CCCCCc-EEEEEeCCCcchh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         236 IFRNVS-FILFLNKTDLLAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       236 ~~~~~p-iiL~lNK~Dl~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                        .+.| ++|++||+|+..+ ++  .                   ...+-+.+.+....   -....++.+||+++.||.
T Consensus       102 --lgi~~iIVVlNKiDlv~~~~~--~-------------------~v~~ei~~~l~~~~---~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512        102 --TGNPMLTVALTKADRVDEARI--A-------------------EVRRQVKAVLREYG---FAEAKLFVTAATEGRGID  155 (614)
T ss_pred             --cCCCeEEEEEECCccCCHHHH--H-------------------HHHHHHHHHHHhcC---CCCCcEEEEeCCCCCCCH
Confidence              2344 6899999998642 22  0                   01111222211111   123568899999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         314 IVFNAVKNTI  323 (334)
Q Consensus       314 ~vf~~v~~~I  323 (334)
                      .+++.+.+..
T Consensus       156 ~L~~~L~~~~  165 (614)
T PRK10512        156 ALREHLLQLP  165 (614)
T ss_pred             HHHHHHHHhh
Confidence            9999987654

>PRK12740 elongation factor G; Reviewed

Probab=98.48  E-value=9.1e-07  Score=92.85  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=68.4

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.|..|++.....+.+++..+.+|||+|+..+...|..++..+|++|+|+|.++..           ......++..+..
T Consensus        42 ~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-----------~~~~~~~~~~~~~  110 (668)
T PRK12740         42 RERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-----------EPQTETVWRQAEK  110 (668)
T ss_pred             HhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-----------CHHHHHHHHHHHH
Confidence            34677888888889999999999999999988888899999999999999998741           2233445544433


Q ss_pred             hcCCCCCcEEEEEeCCCcchh
Q psy3651         234 NVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~e  254 (334)
                          .+.|+++|+||+|+...
T Consensus       111 ----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740        111 ----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             ----cCCCEEEEEECCCCCCC
Confidence                36799999999998754

>cd04167 Snu114p Snu114p subfamily

Probab=98.47  E-value=1.6e-06  Score=77.99  Aligned_cols=67  Identities=16%  Similarity=0.236  Sum_probs=51.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|+..+...+..++..++++|+|+|.++..          . .+...++.....    .+.|+++++||+|
T Consensus        70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~----------~-~~~~~~~~~~~~----~~~p~iiviNK~D  134 (213)
T cd04167          70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV----------T-SNTERLIRHAIL----EGLPIVLVINKID  134 (213)
T ss_pred             EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCC----------C-HHHHHHHHHHHH----cCCCEEEEEECcc
Confidence            478999999999999888999999999999999998752          1 122333333322    3489999999999


Q ss_pred             cc
Q psy3651         251 LL  252 (334)
Q Consensus       251 l~  252 (334)
                      +.
T Consensus       135 ~~  136 (213)
T cd04167         135 RL  136 (213)
T ss_pred             cC
Confidence            85

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.45  E-value=1.8e-06  Score=88.03  Aligned_cols=83  Identities=13%  Similarity=0.240  Sum_probs=60.3

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      |.-|+......+..++..+.+|||+|+..+..-...++..++++|+|+|.++-           -......+++ ++.. 
T Consensus        64 rgisi~~~~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~~t~~l~~-~~~~-  130 (527)
T TIGR00503        64 RGISITTSVMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG-----------VETRTRKLME-VTRL-  130 (527)
T ss_pred             cCCcEEEEEEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC-----------CCHHHHHHHH-HHHh-
Confidence            44445455667888899999999999988776556678999999999998873           1112233443 3332 


Q ss_pred             CCCCCcEEEEEeCCCcch
Q psy3651         236 IFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~  253 (334)
                        .+.|+++|+||+|+..
T Consensus       131 --~~~PiivviNKiD~~~  146 (527)
T TIGR00503       131 --RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             --cCCCEEEEEECccccC
Confidence              5689999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.44  E-value=3.5e-07  Score=78.66  Aligned_cols=115  Identities=17%  Similarity=0.144  Sum_probs=77.2

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccc------ccccccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRS------QRRKWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~------~r~kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |+-.....+.+++..+.++|++|--+      +.+.+..+.  +..|+||.|+|.+.             ++.++.+..+
T Consensus        34 Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~-------------l~r~l~l~~q  100 (156)
T PF02421_consen   34 TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN-------------LERNLYLTLQ  100 (156)
T ss_dssp             SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG-------------HHHHHHHHHH
T ss_pred             CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC-------------HHHHHHHHHH
Confidence            44455667777889999999999644      234455565  68999999999876             4566777777


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +..    .+.|+++++||+|+.+++=  -..+...                  +.+.         -+++++.+||++++
T Consensus       101 l~e----~g~P~vvvlN~~D~a~~~g--~~id~~~------------------Ls~~---------Lg~pvi~~sa~~~~  147 (156)
T PF02421_consen  101 LLE----LGIPVVVVLNKMDEAERKG--IEIDAEK------------------LSER---------LGVPVIPVSARTGE  147 (156)
T ss_dssp             HHH----TTSSEEEEEETHHHHHHTT--EEE-HHH------------------HHHH---------HTS-EEEEBTTTTB
T ss_pred             HHH----cCCCEEEEEeCHHHHHHcC--CEECHHH------------------HHHH---------hCCCEEEEEeCCCc
Confidence            765    4689999999999877531  1111111                  1111         24679999999999


Q ss_pred             hHHHHHHHH
Q psy3651         311 NIKIVFNAV  319 (334)
Q Consensus       311 nI~~vf~~v  319 (334)
                      |++++++.|
T Consensus       148 g~~~L~~~I  156 (156)
T PF02421_consen  148 GIDELKDAI  156 (156)
T ss_dssp             THHHHHHHH
T ss_pred             CHHHHHhhC
Confidence            999998764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.44  E-value=5.7e-07  Score=83.05  Aligned_cols=97  Identities=18%  Similarity=0.255  Sum_probs=63.2

Q ss_pred             ccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccch
Q psy3651         183 RSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTS  262 (334)
Q Consensus       183 ~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~  262 (334)
                      ++++.+...+++++++++.|+|+++.+         .++.....|+. .+..   .++|++|++||+||..++.  ... 
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~---------~s~~~l~r~l~-~~~~---~~i~~vIV~NK~DL~~~~~--~~~-   87 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPE---------LSLNQLDRFLV-VAEA---QNIEPIIVLNKIDLLDDED--MEK-   87 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCC---------CCHHHHHHHHH-HHHH---CCCCEEEEEECcccCCCHH--HHH-
Confidence            345566667999999999999999862         12222222222 2222   5789999999999854321  000 


Q ss_pred             hhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         263 IAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       263 l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                        +                 .+ +.|.      ..++.+++|||++++||+++|+.+.+
T Consensus        88 --~-----------------~~-~~~~------~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        88 --E-----------------QL-DIYR------NIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             --H-----------------HH-HHHH------HCCCeEEEEecCCchhHHHHHhhhcC
Confidence              0                 11 1221      13466889999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0462|consensus

Probab=98.43  E-value=2.7e-06  Score=84.91  Aligned_cols=129  Identities=17%  Similarity=0.216  Sum_probs=95.1

Q ss_pred             ceeeeecceeEEEEEeeC---cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         154 HARKATKGITEFTIVISN---IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~---~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |-|.-|+-.....+.+++   ..++++||.|+-.|+.=-.+-+.-|+++|+|||.+.           .-..+.+..|.-
T Consensus       104 RERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~q-----------GvqAQT~anf~l  172 (650)
T KOG0462|consen  104 RERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQ-----------GVQAQTVANFYL  172 (650)
T ss_pred             hhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCc-----------CchHHHHHHHHH
Confidence            445555555556666666   899999999999998877778889999999999998           556666666655


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      ..+    .+..+|.|+||+|+..+..                     +.+..-+.+.|.-      -.-.+..+||+.|.
T Consensus       173 Afe----~~L~iIpVlNKIDlp~adp---------------------e~V~~q~~~lF~~------~~~~~i~vSAK~G~  221 (650)
T KOG0462|consen  173 AFE----AGLAIIPVLNKIDLPSADP---------------------ERVENQLFELFDI------PPAEVIYVSAKTGL  221 (650)
T ss_pred             HHH----cCCeEEEeeeccCCCCCCH---------------------HHHHHHHHHHhcC------CccceEEEEeccCc
Confidence            555    4678999999999987644                     2222233344322      11257889999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNTIL  324 (334)
Q Consensus       311 nI~~vf~~v~~~I~  324 (334)
                      |+.+++++|.+.|-
T Consensus       222 ~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  222 NVEELLEAIIRRVP  235 (650)
T ss_pred             cHHHHHHHHHhhCC
Confidence            99999999888664

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.41  E-value=2.2e-06  Score=90.29  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=65.1

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .+.-|+-.....+..++..+.+|||+|+..+...|...++.+|++|+|+|.++-           ...+...++..+.. 
T Consensus        58 ~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~-  125 (689)
T TIGR00484        58 ERGITITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGG-----------VQPQSETVWRQANR-  125 (689)
T ss_pred             hcCCCEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCC-----------CChhHHHHHHHHHH-
Confidence            345566666778888999999999999998888899999999999999998873           11223344444332 


Q ss_pred             cCCCCCcEEEEEeCCCcchh
Q psy3651         235 VIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~e  254 (334)
                         .+.|++|++||+|+...
T Consensus       126 ---~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484       126 ---YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             ---cCCCEEEEEECCCCCCC
Confidence               35799999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.36  E-value=1.3e-06  Score=86.49  Aligned_cols=116  Identities=16%  Similarity=0.201  Sum_probs=69.2

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.+.+....-..+++++|+|+|+++-..       .....+.+.+++   .   ....|+++++||+|+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~-------~~~t~~~l~~l~---~---~~i~~iiVVlNK~Dl  151 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP-------QPQTKEHLMALD---I---IGIKNIVIVQNKIDL  151 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------ChhHHHHHHHHH---H---cCCCcEEEEEEeecc
Confidence            578999999998765543333345799999999996310       011222222221   1   122479999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ..+.-      ....          .+....++..       .....+.++.+||+++.|+..+++++.+.+
T Consensus       152 ~~~~~------~~~~----------~~~i~~~l~~-------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        152 VSKER------ALEN----------YEQIKEFVKG-------TVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             ccchh------HHHH----------HHHHHHHhcc-------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            64311      0000          0111111110       011346789999999999999999988755

>PRK00089 era GTPase Era; Reviewed

Probab=98.36  E-value=5.1e-06  Score=78.29  Aligned_cols=113  Identities=19%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             eCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651         170 SNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS  241 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p  241 (334)
                      ++..+.+|||+|....+.        .+...+.++|+++||+|.++.-         .   +....+-..+..   .+.|
T Consensus        51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~---------~---~~~~~i~~~l~~---~~~p  115 (292)
T PRK00089         51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI---------G---PGDEFILEKLKK---VKTP  115 (292)
T ss_pred             CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC---------C---hhHHHHHHHHhh---cCCC
Confidence            457899999999865432        2334678999999999998820         1   111122222221   3579


Q ss_pred             EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         242 FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       242 iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      +++++||+|+...+-  .   +..                 .+ +.+...    .....++.+||+++.|+.++++++.+
T Consensus       116 vilVlNKiDl~~~~~--~---l~~-----------------~~-~~l~~~----~~~~~i~~iSA~~~~gv~~L~~~L~~  168 (292)
T PRK00089        116 VILVLNKIDLVKDKE--E---LLP-----------------LL-EELSEL----MDFAEIVPISALKGDNVDELLDVIAK  168 (292)
T ss_pred             EEEEEECCcCCCCHH--H---HHH-----------------HH-HHHHhh----CCCCeEEEecCCCCCCHHHHHHHHHH
Confidence            999999999863211  0   110                 00 111111    12345789999999999999999887


Q ss_pred             HHH
Q psy3651         322 TIL  324 (334)
Q Consensus       322 ~I~  324 (334)
                      .+.
T Consensus       169 ~l~  171 (292)
T PRK00089        169 YLP  171 (292)
T ss_pred             hCC
Confidence            653

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.30  E-value=8.4e-06  Score=74.25  Aligned_cols=134  Identities=10%  Similarity=0.132  Sum_probs=75.1

Q ss_pred             EEEeeCcceeeeecCCccccccccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISNIPFLFVDVGGQRSQRRKWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~~~~~i~DvgGq~~~r~kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+..++..+.+.|++|++.+.+--.....  .+|++++|+|...-           -......++..+..    .+.|++
T Consensus        78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g-----------~~~~d~~~l~~l~~----~~ip~i  142 (224)
T cd04165          78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG-----------IIGMTKEHLGLALA----LNIPVF  142 (224)
T ss_pred             eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----cCCCEE
Confidence            34556788999999999877554444443  58999999998763           22333444444433    457899


Q ss_pred             EEEeCCCcchh-hhccccchhhhhCC--CCCCCCc---cHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         244 LFLNKTDLLAE-KLRTSKTSIAEHFP--EFEGDPQ---DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       244 L~lNK~Dl~~e-ki~~~~~~l~~~Fp--~y~g~~~---~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      +++||+|+..+ ++.+....+.+.+.  .+...|.   +.+++....    .+.  .....++++.+||.+|+|++++..
T Consensus       143 vvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~----~~~--~~~~~~pi~~vSavtg~Gi~~L~~  216 (224)
T cd04165         143 VVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAA----SNF--SSERIVPIFQVSNVTGEGLDLLHA  216 (224)
T ss_pred             EEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehh----hcC--CccccCcEEEeeCCCccCHHHHHH
Confidence            99999998543 12001112222211  0000000   000000000    000  112345889999999999999877


Q ss_pred             HHH
Q psy3651         318 AVK  320 (334)
Q Consensus       318 ~v~  320 (334)
                      .+.
T Consensus       217 ~L~  219 (224)
T cd04165         217 FLN  219 (224)
T ss_pred             HHH
Confidence            653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.30  E-value=8e-06  Score=88.67  Aligned_cols=126  Identities=18%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      +.+|||+|++.+.......+..++++|+|+|+++--        .....+++.+.   ..    .+.|+++++||+|+..
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi--------~~qT~e~I~~l---k~----~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF--------KPQTIEAINIL---RQ----YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC--------CHhHHHHHHHH---HH----cCCCEEEEEECCCCcc
Confidence            899999999999887777888999999999998620        01222333322   22    3579999999999853


Q ss_pred             -hhhccccchhhhhCCCCCCCCccHHHHHHHHHH-------HHHhhc---------cCCCCCeEEEEEeeecCchHHHHH
Q psy3651         254 -EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLN-------YFKAVK---------RDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       254 -eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~-------~F~~l~---------~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                       .++. ...++..-+   .   ...+.+.+-+.+       .+.+..         ..-.+.+.+..+||++|+||.++.
T Consensus       593 ~~~~~-~~~~~~~~~---~---~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll  665 (1049)
T PRK14845        593 GWNIS-EDEPFLLNF---N---EQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELL  665 (1049)
T ss_pred             ccccc-cchhhhhhh---h---hhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHH
Confidence             2210 111221100   0   000111111111       111110         011256788999999999999999


Q ss_pred             HHHHH
Q psy3651         317 NAVKN  321 (334)
Q Consensus       317 ~~v~~  321 (334)
                      .++..
T Consensus       666 ~~l~~  670 (1049)
T PRK14845        666 MMVAG  670 (1049)
T ss_pred             HHHHH
Confidence            87754

>PRK12736 elongation factor Tu; Reviewed

Probab=98.29  E-value=7e-06  Score=80.94  Aligned_cols=81  Identities=16%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..|+......+..++..+.++|++|++.+.+.-..-...+|++|+|+|.++-           ......+.+..+..   
T Consensus        60 g~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g-----------~~~~t~~~~~~~~~---  125 (394)
T PRK12736         60 GITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDG-----------PMPQTREHILLARQ---  125 (394)
T ss_pred             CccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-----------CchhHHHHHHHHHH---
Confidence            3344444445555677899999999987665555555678999999998762           22333444443332   


Q ss_pred             CCCCc-EEEEEeCCCcc
Q psy3651         237 FRNVS-FILFLNKTDLL  252 (334)
Q Consensus       237 ~~~~p-iiL~lNK~Dl~  252 (334)
                       .+.| +|+++||+|+.
T Consensus       126 -~g~~~~IvviNK~D~~  141 (394)
T PRK12736        126 -VGVPYLVVFLNKVDLV  141 (394)
T ss_pred             -cCCCEEEEEEEecCCc
Confidence             2466 78999999986

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.27  E-value=9.2e-07  Score=77.82  Aligned_cols=77  Identities=22%  Similarity=0.353  Sum_probs=55.7

Q ss_pred             eCcceeeeecCCccccccccccc---ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEE
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQC---FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFIL  244 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~---f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL  244 (334)
                      .+..++++|++|+.+.|..-...   ..++.+||||+|.+...         ..+.+.-+.+-.++..+.  ...+|++|
T Consensus        47 ~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~---------~~~~~~Ae~Ly~iL~~~~~~~~~~piLI  117 (181)
T PF09439_consen   47 KGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQ---------KELRDVAEYLYDILSDTEVQKNKPPILI  117 (181)
T ss_dssp             CGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHCCTT--EEEE
T ss_pred             CCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccch---------hhHHHHHHHHHHHHHhhhhccCCCCEEE
Confidence            45789999999999999865554   77999999999998641         346666666666666544  35679999


Q ss_pred             EEeCCCcchhh
Q psy3651         245 FLNKTDLLAEK  255 (334)
Q Consensus       245 ~lNK~Dl~~ek  255 (334)
                      ++||+|++..+
T Consensus       118 acNK~Dl~~A~  128 (181)
T PF09439_consen  118 ACNKQDLFTAK  128 (181)
T ss_dssp             EEE-TTSTT--
T ss_pred             EEeCccccccC
Confidence            99999998864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.25  E-value=1.5e-06  Score=75.73  Aligned_cols=102  Identities=14%  Similarity=0.267  Sum_probs=59.4

Q ss_pred             ceeeeecCCccc------cccccc----cccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651         173 PFLFVDVGGQRS------QRRKWF----QCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN  239 (334)
Q Consensus       173 ~~~i~DvgGq~~------~r~kw~----~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~  239 (334)
                      .+.+||++|...      ++..|.    .|++   .++++|+|+|.+..           -......++.. +..   .+
T Consensus        65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~-----------~~~~~~~~~~~-~~~---~~  129 (179)
T TIGR03598        65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHP-----------LKELDLEMLEW-LRE---RG  129 (179)
T ss_pred             cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCC-----------CCHHHHHHHHH-HHH---cC
Confidence            799999999642      233443    4554   46899999998763           11111222322 221   36


Q ss_pred             CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .|+++++||+|+..+.-      .              +...+.+++.+...    .....++.+||++++||+
T Consensus       130 ~pviiv~nK~D~~~~~~------~--------------~~~~~~i~~~l~~~----~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       130 IPVLIVLTKADKLKKSE------L--------------NKQLKKIKKALKKD----ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             CCEEEEEECcccCCHHH------H--------------HHHHHHHHHHHhhc----cCCCceEEEECCCCCCCC
Confidence            79999999999864310      0              11112233332221    123468999999999873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12739 elongation factor G; Reviewed

Probab=98.24  E-value=7.9e-06  Score=86.14  Aligned_cols=93  Identities=14%  Similarity=0.139  Sum_probs=69.1

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      -||.|.+    +.|.-|+-.....+..++..+.++||+|+..+..-|....+.+|++|+|+|.++-           -..
T Consensus        48 ~D~~~~E----~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g-----------~~~  112 (691)
T PRK12739         48 MDWMEQE----QERGITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSG-----------VEP  112 (691)
T ss_pred             cCCChhH----hhcCCCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCC-----------CCH
Confidence            3455543    3345566666777888999999999999998888899999999999999998763           122


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      ....++..+..    .+.|+|+++||+|+..+
T Consensus       113 qt~~i~~~~~~----~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739        113 QSETVWRQADK----YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            33345554433    45799999999999753

>PRK13768 GTPase; Provisional

Probab=98.22  E-value=4.3e-06  Score=77.53  Aligned_cols=132  Identities=18%  Similarity=0.222  Sum_probs=73.1

Q ss_pred             ceeeeecCCccc---ccccccccccC-----CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651         173 PFLFVDVGGQRS---QRRKWFQCFDS-----VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL  244 (334)
Q Consensus       173 ~~~i~DvgGq~~---~r~kw~~~f~~-----v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL  244 (334)
                      .+.+||++|+..   ++..|..+++.     .++++||+|.+...+.       ..+.. ..++...+..  ..+.|+++
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~-------~d~~~-~~~l~~~~~~--~~~~~~i~  167 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTP-------SDFVS-LLLLALSVQL--RLGLPQIP  167 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCH-------HHHHH-HHHHHHHHHH--HcCCCEEE
Confidence            567999999876   46677665543     8899999999764110       11111 1222222211  14689999


Q ss_pred             EEeCCCcchhhhccccchhhhhCCC-------C--CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         245 FLNKTDLLAEKLRTSKTSIAEHFPE-------F--EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       245 ~lNK~Dl~~eki~~~~~~l~~~Fp~-------y--~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ++||+|+..+.   ....+..++.+       +  .+++.  .....-+.+.+.+.    .....++.+||+++++++++
T Consensus       168 v~nK~D~~~~~---~~~~~~~~l~~~~~~~~~l~~~~~~~--~~~~~~~~~~i~~~----~~~~~vi~iSa~~~~gl~~L  238 (253)
T PRK13768        168 VLNKADLLSEE---ELERILKWLEDPEYLLEELKLEKGLQ--GLLSLELLRALEET----GLPVRVIPVSAKTGEGFDEL  238 (253)
T ss_pred             EEEhHhhcCch---hHHHHHHHHhCHHHHHHHHhcccchH--HHHHHHHHHHHHHH----CCCCcEEEEECCCCcCHHHH
Confidence            99999986542   11122222211       0  01110  11111111112221    12245788999999999999


Q ss_pred             HHHHHHHH
Q psy3651         316 FNAVKNTI  323 (334)
Q Consensus       316 f~~v~~~I  323 (334)
                      .+++.+.+
T Consensus       239 ~~~I~~~l  246 (253)
T PRK13768        239 YAAIQEVF  246 (253)
T ss_pred             HHHHHHHc
Confidence            99987754

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.22  E-value=5.3e-06  Score=88.12  Aligned_cols=114  Identities=14%  Similarity=0.093  Sum_probs=75.9

Q ss_pred             eEEEEEeeCcceeeeecCCccccccc----------ccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         163 TEFTIVISNIPFLFVDVGGQRSQRRK----------WFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       163 ~~~~~~~~~~~~~i~DvgGq~~~r~k----------w~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      .+..+..++.++++||++|+.+....          +..++  +.+|++|+|+|.++.          .+   .+.++.+
T Consensus        41 k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l----------er---~l~l~~q  107 (772)
T PRK09554         41 KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ER---NLYLTLQ  107 (772)
T ss_pred             EEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc----------hh---hHHHHHH
Confidence            34456667889999999999875431          33343  489999999999885          22   2344555


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +.+    .+.|+++++||+|+.+++-  ....+.                  -+.++         .++++..+||.+++
T Consensus       108 l~e----~giPvIvVlNK~Dl~~~~~--i~id~~------------------~L~~~---------LG~pVvpiSA~~g~  154 (772)
T PRK09554        108 LLE----LGIPCIVALNMLDIAEKQN--IRIDID------------------ALSAR---------LGCPVIPLVSTRGR  154 (772)
T ss_pred             HHH----cCCCEEEEEEchhhhhccC--cHHHHH------------------HHHHH---------hCCCEEEEEeecCC
Confidence            543    3689999999999864321  111111                  11111         23568899999999


Q ss_pred             hHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNT  322 (334)
Q Consensus       311 nI~~vf~~v~~~  322 (334)
                      |++++.+.+.+.
T Consensus       155 GIdeL~~~I~~~  166 (772)
T PRK09554        155 GIEALKLAIDRH  166 (772)
T ss_pred             CHHHHHHHHHHh
Confidence            999998888664

>cd01855 YqeH YqeH

Probab=98.20  E-value=2.9e-06  Score=74.77  Aligned_cols=100  Identities=17%  Similarity=0.092  Sum_probs=62.5

Q ss_pred             ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhh
Q psy3651         185 QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIA  264 (334)
Q Consensus       185 ~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~  264 (334)
                      ++..|..+++++++||+|+|+++.+..         ..+.+      ..  ...+.|+++++||+|+..+..  ...   
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~---------~~~~l------~~--~~~~~~~ilV~NK~Dl~~~~~--~~~---   81 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS---------LIPRL------RL--FGGNNPVILVGNKIDLLPKDK--NLV---   81 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc---------cchhH------HH--hcCCCcEEEEEEchhcCCCCC--CHH---
Confidence            578899999999999999999986321         11111      11  124679999999999864321  111   


Q ss_pred             hhCCCCCCCCccHHHHHHHHHH-HHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         265 EHFPEFEGDPQDMQAVQTFLLN-YFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       265 ~~Fp~y~g~~~~~~~~~~fi~~-~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                                    ....+... .+....   -....++.+||+++.|++++++++.+.+
T Consensus        82 --------------~~~~~~~~~~~~~~~---~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          82 --------------RIKNWLRAKAAAGLG---LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             --------------HHHHHHHHHHHhhcC---CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence                          11112200 001100   0112478899999999999999998754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.16  E-value=1.8e-05  Score=78.01  Aligned_cols=83  Identities=18%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      |..|+......+..++..+.+||++|++.+.+.-..-...+|++|+|+|..+-           -.....+.+..+..  
T Consensus        59 rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g-----------~~~qt~e~l~~~~~--  125 (394)
T TIGR00485        59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDG-----------PMPQTREHILLARQ--  125 (394)
T ss_pred             cCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH--
Confidence            33444444445555677899999999987654433334567999999998872           22333344443332  


Q ss_pred             CCCCCc-EEEEEeCCCcch
Q psy3651         236 IFRNVS-FILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~p-iiL~lNK~Dl~~  253 (334)
                        .+.| +|+++||+|+..
T Consensus       126 --~gi~~iIvvvNK~Dl~~  142 (394)
T TIGR00485       126 --VGVPYIVVFLNKCDMVD  142 (394)
T ss_pred             --cCCCEEEEEEEecccCC
Confidence              2456 457899999864

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.14  E-value=1.3e-05  Score=67.49  Aligned_cols=111  Identities=13%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             ceeeeecCCcc----------ccccccccccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651         173 PFLFVDVGGQR----------SQRRKWFQCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN  239 (334)
Q Consensus       173 ~~~i~DvgGq~----------~~r~kw~~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~  239 (334)
                      .+.+||++|-.          ..+..+..|+.   +++++++++|.....+        ....+...++..       .+
T Consensus        46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~--------~~~~~~~~~l~~-------~~  110 (170)
T cd01876          46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT--------EIDLEMLDWLEE-------LG  110 (170)
T ss_pred             eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC--------HhHHHHHHHHHH-------cC
Confidence            88999999943          23344455554   4678999999876411        111122222222       24


Q ss_pred             CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      .|+++++||+|+....-   .....             .    -+...   +.. ......++.+||+++.++.++++++
T Consensus       111 ~~vi~v~nK~D~~~~~~---~~~~~-------------~----~~~~~---l~~-~~~~~~~~~~Sa~~~~~~~~l~~~l  166 (170)
T cd01876         111 IPFLVVLTKADKLKKSE---LAKAL-------------K----EIKKE---LKL-FEIDPPIILFSSLKGQGIDELRALI  166 (170)
T ss_pred             CCEEEEEEchhcCChHH---HHHHH-------------H----HHHHH---HHh-ccCCCceEEEecCCCCCHHHHHHHH
Confidence            79999999999854211   00000             0    01111   110 1233557899999999999999998


Q ss_pred             HHH
Q psy3651         320 KNT  322 (334)
Q Consensus       320 ~~~  322 (334)
                      .+.
T Consensus       167 ~~~  169 (170)
T cd01876         167 EKW  169 (170)
T ss_pred             HHh
Confidence            764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.10  E-value=1.4e-05  Score=79.95  Aligned_cols=134  Identities=16%  Similarity=0.162  Sum_probs=81.6

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc--ccccHHHHHHHHHHH
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR--RTNRLHESRNIFDTI  231 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~--~~nrl~esl~lf~~i  231 (334)
                      +.|.-|+.+....|+.++..+.+.|++|++.+.+.-......+|++|+|+|.++=   ..|..  ......+.+.+    
T Consensus        67 r~rGiTi~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G---~~e~g~~~~~qT~eh~~~----  139 (447)
T PLN00043         67 RERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG---GFEAGISKDGQTREHALL----  139 (447)
T ss_pred             HhcCceEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC---ceecccCCCchHHHHHHH----
Confidence            3455566666677777889999999999999988888889999999999999861   00100  00122222222    


Q ss_pred             HhhcCCCCC-cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         232 INNVIFRNV-SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       232 ~~~~~~~~~-piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +..   .++ ++|+++||+|+.....  ....              ++++.+-+...+....-. ...+.+..+||.+|+
T Consensus       140 ~~~---~gi~~iIV~vNKmD~~~~~~--~~~~--------------~~~i~~ei~~~l~~~g~~-~~~~~~ipiSa~~G~  199 (447)
T PLN00043        140 AFT---LGVKQMICCCNKMDATTPKY--SKAR--------------YDEIVKEVSSYLKKVGYN-PDKIPFVPISGFEGD  199 (447)
T ss_pred             HHH---cCCCcEEEEEEcccCCchhh--hHHH--------------HHHHHHHHHHHHHHcCCC-cccceEEEEeccccc
Confidence            221   345 5899999999752111  1111              112222233322222211 134778999999999


Q ss_pred             hHHH
Q psy3651         311 NIKI  314 (334)
Q Consensus       311 nI~~  314 (334)
                      ||.+
T Consensus       200 ni~~  203 (447)
T PLN00043        200 NMIE  203 (447)
T ss_pred             cccc
Confidence            9853

>PRK12735 elongation factor Tu; Reviewed

Probab=98.09  E-value=2.8e-05  Score=76.68  Aligned_cols=83  Identities=19%  Similarity=0.287  Sum_probs=52.9

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+......+..++..+.++||+|++.+.+--..-..++|++++|+|..+-           -.....+.+..+..  
T Consensus        59 rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g-----------~~~qt~e~l~~~~~--  125 (396)
T PRK12735         59 RGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ--  125 (396)
T ss_pred             cCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CchhHHHHHHHHHH--
Confidence            34444444445555677899999999986654444445688999999998862           11222233333222  


Q ss_pred             CCCCCcEE-EEEeCCCcch
Q psy3651         236 IFRNVSFI-LFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~pii-L~lNK~Dl~~  253 (334)
                        .+.|.+ +++||+|+..
T Consensus       126 --~gi~~iivvvNK~Dl~~  142 (396)
T PRK12735        126 --VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             --cCCCeEEEEEEecCCcc
Confidence              346754 6899999863

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.07  E-value=1.1e-05  Score=79.90  Aligned_cols=124  Identities=13%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .|.-|+......+..++.++.++|++|++.+-+.-..-...+|++|+|+|.++--+        ....+.+.+...    
T Consensus        63 ~rgiTid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~--------~qt~~~~~~~~~----  130 (406)
T TIGR02034        63 EQGITIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL--------EQTRRHSYIASL----  130 (406)
T ss_pred             cCCcCeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------cccHHHHHHHHH----
Confidence            34455555566677778899999999998875544455678999999999876310        111222222111    


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~  313 (334)
                        ....++++++||+|+....    ...+                  +-+.+.+..+... .-..+.++.+||.+|.|+.
T Consensus       131 --~~~~~iivviNK~D~~~~~----~~~~------------------~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~  186 (406)
T TIGR02034       131 --LGIRHVVLAVNKMDLVDYD----EEVF------------------ENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVV  186 (406)
T ss_pred             --cCCCcEEEEEEecccccch----HHHH------------------HHHHHHHHHHHHHcCCCCccEEEeecccCCCCc
Confidence              1234689999999985421    0001                  0111121111111 1134668899999999987


Q ss_pred             H
Q psy3651         314 I  314 (334)
Q Consensus       314 ~  314 (334)
                      +
T Consensus       187 ~  187 (406)
T TIGR02034       187 S  187 (406)
T ss_pred             c
Confidence            5

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.03  E-value=0.00011  Score=72.32  Aligned_cols=124  Identities=15%  Similarity=0.237  Sum_probs=82.1

Q ss_pred             EEEEEeeCcceeeeecCCccccccccc--ccc---------cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWF--QCF---------DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~--~~f---------~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...++.++.++.++||+|-|+-.+.-.  .+|         +.++.+++|+|.++-           -.++-+.+-.-+.
T Consensus       218 ~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~-----------~~~qD~~ia~~i~  286 (444)
T COG1160         218 DIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG-----------ISEQDLRIAGLIE  286 (444)
T ss_pred             eeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC-----------chHHHHHHHHHHH
Confidence            445666789999999999987544332  222         357999999999984           2333344444444


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.++++++||.|+.++.    ..              ..+...+-|..+|.-+     .-...+++||+++.++
T Consensus       287 ~----~g~~~vIvvNKWDl~~~~----~~--------------~~~~~k~~i~~~l~~l-----~~a~i~~iSA~~~~~i  339 (444)
T COG1160         287 E----AGRGIVIVVNKWDLVEED----EA--------------TMEEFKKKLRRKLPFL-----DFAPIVFISALTGQGL  339 (444)
T ss_pred             H----cCCCeEEEEEccccCCch----hh--------------HHHHHHHHHHHHhccc-----cCCeEEEEEecCCCCh
Confidence            3    567999999999987641    00              1111222333333222     2346899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILH  325 (334)
Q Consensus       313 ~~vf~~v~~~I~~  325 (334)
                      ..+|+++.+..-.
T Consensus       340 ~~l~~~i~~~~~~  352 (444)
T COG1160         340 DKLFEAIKEIYEC  352 (444)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999876544

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.01  E-value=2.7e-05  Score=78.05  Aligned_cols=133  Identities=16%  Similarity=0.159  Sum_probs=80.4

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc--cccHHHHHHHHHHHH
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR--TNRLHESRNIFDTII  232 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~--~nrl~esl~lf~~i~  232 (334)
                      .|.-|+.+....++.++..+.++|++|++.+-+-.......+|++|+|+|.++=   ..|-.-  .....+.+.+.    
T Consensus        68 ~rGiTid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G---~~e~~~~~~~qT~eh~~~~----  140 (446)
T PTZ00141         68 ERGITIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG---EFEAGISKDGQTREHALLA----  140 (446)
T ss_pred             hcCEeEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC---ceecccCCCccHHHHHHHH----
Confidence            345555556667777889999999999999887777778899999999998862   000000  01223333222    


Q ss_pred             hhcCCCCC-cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         233 NNVIFRNV-SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       233 ~~~~~~~~-piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                      ..   .++ ++|++.||+|.....-  ..              ...+.+.+-|...+..+.-. ...+.+..+||.+|.|
T Consensus       141 ~~---~gi~~iiv~vNKmD~~~~~~--~~--------------~~~~~i~~~i~~~l~~~g~~-~~~~~~ipiSa~~g~n  200 (446)
T PTZ00141        141 FT---LGVKQMIVCINKMDDKTVNY--SQ--------------ERYDEIKKEVSAYLKKVGYN-PEKVPFIPISGWQGDN  200 (446)
T ss_pred             HH---cCCCeEEEEEEccccccchh--hH--------------HHHHHHHHHHHHHHHhcCCC-cccceEEEeecccCCC
Confidence            21   344 4789999999532100  00              01122223333333332211 2358899999999999


Q ss_pred             HHH
Q psy3651         312 IKI  314 (334)
Q Consensus       312 I~~  314 (334)
                      +.+
T Consensus       201 i~~  203 (446)
T PTZ00141        201 MIE  203 (446)
T ss_pred             ccc
Confidence            853

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.00  E-value=2.2e-05  Score=79.19  Aligned_cols=128  Identities=11%  Similarity=0.126  Sum_probs=74.5

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.|.-|+-.....+..++..+.++||+|++.+.+....-...+|++|+|+|..+--+        ....+.+.+...   
T Consensus        89 r~rgiTid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~--------~qt~~~~~l~~~---  157 (474)
T PRK05124         89 REQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL--------DQTRRHSFIATL---  157 (474)
T ss_pred             hhcCCCeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc--------ccchHHHHHHHH---
Confidence            344555555556677778899999999998775544545689999999999876300        111122222111   


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                         ....|+||++||+|+....    ...+              +...+.+......+..  .....++.+||+++.||.
T Consensus       158 ---lg~~~iIvvvNKiD~~~~~----~~~~--------------~~i~~~l~~~~~~~~~--~~~~~iipvSA~~g~ni~  214 (474)
T PRK05124        158 ---LGIKHLVVAVNKMDLVDYS----EEVF--------------ERIREDYLTFAEQLPG--NLDIRFVPLSALEGDNVV  214 (474)
T ss_pred             ---hCCCceEEEEEeeccccch----hHHH--------------HHHHHHHHHHHHhcCC--CCCceEEEEEeecCCCcc
Confidence               1224789999999985321    0001              1111112111111110  124678999999999997


Q ss_pred             HH
Q psy3651         314 IV  315 (334)
Q Consensus       314 ~v  315 (334)
                      ..
T Consensus       215 ~~  216 (474)
T PRK05124        215 SQ  216 (474)
T ss_pred             cc
Confidence            53

>CHL00071 tufA elongation factor Tu

Probab=97.99  E-value=5.9e-05  Score=74.76  Aligned_cols=83  Identities=17%  Similarity=0.237  Sum_probs=57.1

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+......++.++..+.+.|++|++.+-+....-...+|++++|+|..+-           -.......+..+..  
T Consensus        59 rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g-----------~~~qt~~~~~~~~~--  125 (409)
T CHL00071         59 RGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTKEHILLAKQ--  125 (409)
T ss_pred             CCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH--
Confidence            34455444556666778899999999887655555566789999999998762           22344444444332  


Q ss_pred             CCCCCc-EEEEEeCCCcch
Q psy3651         236 IFRNVS-FILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~p-iiL~lNK~Dl~~  253 (334)
                        .+.| +|+++||+|+..
T Consensus       126 --~g~~~iIvvvNK~D~~~  142 (409)
T CHL00071        126 --VGVPNIVVFLNKEDQVD  142 (409)
T ss_pred             --cCCCEEEEEEEccCCCC
Confidence              3467 789999999864

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=5.2e-05  Score=75.85  Aligned_cols=122  Identities=11%  Similarity=0.127  Sum_probs=82.1

Q ss_pred             EEEEEe---eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651         164 EFTIVI---SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV  240 (334)
Q Consensus       164 ~~~~~~---~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~  240 (334)
                      -+.+..   +...+.+.||+|++.|-.+...=.+=+|.+|+|+|..|           -.+.+.++-....-+    .++
T Consensus        44 A~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD-----------Gv~pQTiEAI~hak~----a~v  108 (509)
T COG0532          44 AYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD-----------GVMPQTIEAINHAKA----AGV  108 (509)
T ss_pred             eEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC-----------CcchhHHHHHHHHHH----CCC
Confidence            344444   34689999999999998888877777899999999998           444444444333322    689


Q ss_pred             cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      ||+++.||+|.......+-...+.++                       ++... -.+...+..+||++|+||.+++..+
T Consensus       109 P~iVAiNKiDk~~~np~~v~~el~~~-----------------------gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~i  165 (509)
T COG0532         109 PIVVAINKIDKPEANPDKVKQELQEY-----------------------GLVPEEWGGDVIFVPVSAKTGEGIDELLELI  165 (509)
T ss_pred             CEEEEEecccCCCCCHHHHHHHHHHc-----------------------CCCHhhcCCceEEEEeeccCCCCHHHHHHHH
Confidence            99999999997643220001112221                       11111 1245778899999999999999877


Q ss_pred             HHHH
Q psy3651         320 KNTI  323 (334)
Q Consensus       320 ~~~I  323 (334)
                      .-.-
T Consensus       166 ll~a  169 (509)
T COG0532         166 LLLA  169 (509)
T ss_pred             HHHH
Confidence            6543

>KOG3886|consensus

Probab=97.94  E-value=6e-06  Score=74.54  Aligned_cols=100  Identities=19%  Similarity=0.349  Sum_probs=66.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEe-eCcceeeeecCCcccc-----cccccccccCCCeEEEEEeCCCccchh
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVI-SNIPFLFVDVGGQRSQ-----RRKWFQCFDSVTSILFLVSSSEYDQTL  212 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~-----r~kw~~~f~~v~~iIfv~dls~~d~~l  212 (334)
                      +.++.+|+.-+  . ++-.+|+.+....+.+ +++.+.+||.|||+.+     +..-.+-|++++++|||+|++.     
T Consensus        22 siiF~ny~a~D--~-~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves-----   93 (295)
T KOG3886|consen   22 SIIFANYIARD--T-RRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVES-----   93 (295)
T ss_pred             hhhhhhhhhhh--h-hccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccc-----
Confidence            44445554422  1 2223455555555544 5689999999999964     3344678999999999999998     


Q ss_pred             hcccccccHHHHHHHHHH----HHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         213 VEDRRTNRLHESRNIFDT----IINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       213 ~ed~~~nrl~esl~lf~~----i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                            +.++.-+..|+.    ++++  .+...++.++.|+||..+
T Consensus        94 ------~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~  131 (295)
T KOG3886|consen   94 ------REMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQE  131 (295)
T ss_pred             ------hhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhccc
Confidence                  444444444444    4443  356779999999998654

>cd01859 MJ1464 MJ1464

Probab=97.93  E-value=1.7e-05  Score=67.59  Aligned_cols=94  Identities=15%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhh
Q psy3651         186 RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAE  265 (334)
Q Consensus       186 r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~  265 (334)
                      |+.+.|..+++|.+|+|+|.++...        .. .  ..+.. ...   ..+.|+++++||+|+..+..      ...
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~--------~~-~--~~l~~-~~~---~~~~p~iiv~NK~Dl~~~~~------~~~   61 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPEL--------TR-S--RKLER-YVL---ELGKKLLIVLNKADLVPKEV------LEK   61 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcc--------cC-C--HHHHH-HHH---hCCCcEEEEEEhHHhCCHHH------HHH
Confidence            5677888999999999999977421        11 0  11111 121   13579999999999853211      001


Q ss_pred             hCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         266 HFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       266 ~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                                       +.  .+..     .....++.+||+++.|++++++.+.+.+-
T Consensus        62 -----------------~~--~~~~-----~~~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          62 -----------------WK--SIKE-----SEGIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             -----------------HH--HHHH-----hCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence                             00  0110     11234789999999999999998887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.92  E-value=6.8e-05  Score=74.05  Aligned_cols=120  Identities=20%  Similarity=0.239  Sum_probs=81.5

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccc--------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRR--------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD  229 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~--------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~  229 (334)
                      .|.-+-+..+.++|+.+++.||+|-|....        +-..-.+.+|.|+||+|.+..           --.+-..+++
T Consensus       251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~-----------~~~~d~~~~~  319 (454)
T COG0486         251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQP-----------LDKEDLALIE  319 (454)
T ss_pred             CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CchhhHHHHH
Confidence            355677889999999999999999996321        112345789999999999984           1112223333


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651         230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT  309 (334)
Q Consensus       230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~  309 (334)
                           ....+.|+++|.||.||..+..   ...+ +                            . ......+.+||+++
T Consensus       320 -----~~~~~~~~i~v~NK~DL~~~~~---~~~~-~----------------------------~-~~~~~~i~iSa~t~  361 (454)
T COG0486         320 -----LLPKKKPIIVVLNKADLVSKIE---LESE-K----------------------------L-ANGDAIISISAKTG  361 (454)
T ss_pred             -----hcccCCCEEEEEechhcccccc---cchh-h----------------------------c-cCCCceEEEEecCc
Confidence                 1236689999999999976521   1111 1                            0 11235788999999


Q ss_pred             chHHHHHHHHHHHHHHH
Q psy3651         310 ENIKIVFNAVKNTILHR  326 (334)
Q Consensus       310 ~nI~~vf~~v~~~I~~~  326 (334)
                      +|+..+-+.+.......
T Consensus       362 ~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         362 EGLDALREAIKQLFGKG  378 (454)
T ss_pred             cCHHHHHHHHHHHHhhc
Confidence            99998888877765543

>PLN03126 Elongation factor Tu; Provisional

Probab=97.88  E-value=8.7e-05  Score=74.94  Aligned_cols=83  Identities=17%  Similarity=0.235  Sum_probs=56.8

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+......++.++.++.++|++|++.+-+--..-...+|++|+|+|..+-           ......+.+..+..  
T Consensus       128 rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G-----------~~~qt~e~~~~~~~--  194 (478)
T PLN03126        128 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG-----------PMPQTKEHILLAKQ--  194 (478)
T ss_pred             CCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH--
Confidence            33344334455666788999999999998765555556788999999998862           23344444443322  


Q ss_pred             CCCCCc-EEEEEeCCCcch
Q psy3651         236 IFRNVS-FILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~p-iiL~lNK~Dl~~  253 (334)
                        .+.| +++++||+|+..
T Consensus       195 --~gi~~iIvvvNK~Dl~~  211 (478)
T PLN03126        195 --VGVPNMVVFLNKQDQVD  211 (478)
T ss_pred             --cCCCeEEEEEecccccC
Confidence              3566 888999999854

>PRK00049 elongation factor Tu; Reviewed

Probab=97.87  E-value=0.00015  Score=71.63  Aligned_cols=83  Identities=18%  Similarity=0.268  Sum_probs=54.6

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      |..|+......+..++..+.+.|++|++.+.+--..-...+|++++|+|..+-           -.......+..+..  
T Consensus        59 rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g-----------~~~qt~~~~~~~~~--  125 (396)
T PRK00049         59 RGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ--  125 (396)
T ss_pred             cCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCC-----------CchHHHHHHHHHHH--
Confidence            44455554555555678899999999986654444456789999999998762           12233344433332  


Q ss_pred             CCCCCcEE-EEEeCCCcch
Q psy3651         236 IFRNVSFI-LFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~pii-L~lNK~Dl~~  253 (334)
                        .+.|++ +++||+|+..
T Consensus       126 --~g~p~iiVvvNK~D~~~  142 (396)
T PRK00049        126 --VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             --cCCCEEEEEEeecCCcc
Confidence              346865 6899999863

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.86  E-value=5.4e-05  Score=73.81  Aligned_cols=102  Identities=17%  Similarity=0.237  Sum_probs=66.5

Q ss_pred             cccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccc
Q psy3651         182 QRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKT  261 (334)
Q Consensus       182 q~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~  261 (334)
                      ++.+++.-..+++++++|++|+|+.+++..         +.   ..+.+.+     .+.|++|++||+||..+..  .  
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---------~~---~~l~~~~-----~~~piilV~NK~DLl~k~~--~--  108 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS---------LI---PELKRFV-----GGNPVLLVGNKIDLLPKSV--N--  108 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCCC---------cc---HHHHHHh-----CCCCEEEEEEchhhCCCCC--C--
Confidence            456777778888999999999999887321         11   1111222     3579999999999865322  1  


Q ss_pred             hhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         262 SIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       262 ~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                                     .+.+.+++++.+....-   ....++.+||+++.|++++|+.+.+.
T Consensus       109 ---------------~~~~~~~l~~~~k~~g~---~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       109 ---------------LSKIKEWMKKRAKELGL---KPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             ---------------HHHHHHHHHHHHHHcCC---CcCcEEEecCCCCCCHHHHHHHHHHH
Confidence                           22333455544332211   11237889999999999999988653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1084 Predicted GTPase [General function prediction only]

Probab=97.84  E-value=0.00016  Score=68.52  Aligned_cols=84  Identities=24%  Similarity=0.317  Sum_probs=64.0

Q ss_pred             eecceeEEEEEeeCcceeeeecCCccc----cc-----ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRS----QR-----RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~----~r-----~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      .|.|++..+|..+..++|++||.|--.    +|     .-....=.=.++|+|++|.|+.        +.-.+++...||
T Consensus       201 TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~--------cgy~lE~Q~~L~  272 (346)
T COG1084         201 TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET--------CGYSLEEQISLL  272 (346)
T ss_pred             cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc--------cCCCHHHHHHHH
Confidence            366788888888889999999999642    22     1111111235789999999986        346889999999


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      +++...  |. .|+++|+||+|+.
T Consensus       273 ~eIk~~--f~-~p~v~V~nK~D~~  293 (346)
T COG1084         273 EEIKEL--FK-APIVVVINKIDIA  293 (346)
T ss_pred             HHHHHh--cC-CCeEEEEeccccc
Confidence            999764  55 8999999999987

>PLN03127 Elongation factor Tu; Provisional

Probab=97.84  E-value=0.00021  Score=71.62  Aligned_cols=85  Identities=16%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.+..|+......++.++..+.+.|++|++.+-+.-..-...+|++++|+|..+-           -..+..+.+..+..
T Consensus       106 ~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g-----------~~~qt~e~l~~~~~  174 (447)
T PLN03127        106 KARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-----------PMPQTKEHILLARQ  174 (447)
T ss_pred             hhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCC-----------CchhHHHHHHHHHH
Confidence            3455566666666766778899999999986544333334579999999997752           12233333333322


Q ss_pred             hcCCCCCc-EEEEEeCCCcch
Q psy3651         234 NVIFRNVS-FILFLNKTDLLA  253 (334)
Q Consensus       234 ~~~~~~~p-iiL~lNK~Dl~~  253 (334)
                          .+.| +|+++||+|+..
T Consensus       175 ----~gip~iIvviNKiDlv~  191 (447)
T PLN03127        175 ----VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             ----cCCCeEEEEEEeeccCC
Confidence                3467 578999999864

>PRK09866 hypothetical protein; Provisional

Probab=97.82  E-value=0.00031  Score=72.34  Aligned_cols=116  Identities=11%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             cceeeeecCCcccc-cc----cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         172 IPFLFVDVGGQRSQ-RR----KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       172 ~~~~i~DvgGq~~~-r~----kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      ..+.+.||+|-..- .+    .-.....++|+|+||+|....          ....+ ..+.+.+-.  .-.+.|+++++
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~----------~s~~D-eeIlk~Lkk--~~K~~PVILVV  296 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL----------KSISD-EEVREAILA--VGQSVPLYVLV  296 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC----------CChhH-HHHHHHHHh--cCCCCCEEEEE
Confidence            67889999998652 22    233467899999999998763          11111 122222322  11236999999


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      ||+|+..+    ..              .+.+.+..++...+....   ...-.++.+||+.|.|+..+.+.|..
T Consensus       297 NKIDl~dr----ee--------------ddkE~Lle~V~~~L~q~~---i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        297 NKFDQQDR----NS--------------DDADQVRALISGTLMKGC---ITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             EcccCCCc----cc--------------chHHHHHHHHHHHHHhcC---CCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            99997432    10              112333445543322211   11234788999999999999887765

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.81  E-value=7e-05  Score=53.15  Aligned_cols=45  Identities=33%  Similarity=0.531  Sum_probs=33.4

Q ss_pred             CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         196 VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       196 v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .++|+|++|+|+.        ...++++-+.+|+++..  .|.+.|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~--------CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQ--------CGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-T--------TSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCC--------CCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence            5789999999996        34689999999999976  588999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.81  E-value=5e-05  Score=79.34  Aligned_cols=84  Identities=15%  Similarity=0.152  Sum_probs=54.9

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      |..|+-.....+..++.++.++||+|++.+-+.-..-...+|++|+|+|.++--        .....+.+.+...     
T Consensus        88 rg~Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~--------~~~t~e~~~~~~~-----  154 (632)
T PRK05506         88 QGITIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGV--------LTQTRRHSFIASL-----  154 (632)
T ss_pred             CCcCceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCc--------cccCHHHHHHHHH-----
Confidence            444554555667778889999999999876554445567899999999987530        0111222222211     


Q ss_pred             CCCCCcEEEEEeCCCcch
Q psy3651         236 IFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~  253 (334)
                       ....+++|++||+|+..
T Consensus       155 -~~~~~iivvvNK~D~~~  171 (632)
T PRK05506        155 -LGIRHVVLAVNKMDLVD  171 (632)
T ss_pred             -hCCCeEEEEEEeccccc
Confidence             12357899999999863

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.77  E-value=0.00012  Score=72.43  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             ceeeeecceeEEEEEee-----CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         154 HARKATKGITEFTIVIS-----NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~-----~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      |-|.-|+-....++.++     .+.++++||.|+-.|.---..-+..|.++|+|||.|.=           --...+.-+
T Consensus        53 RERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQG-----------veAQTlAN~  121 (603)
T COG0481          53 RERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-----------VEAQTLANV  121 (603)
T ss_pred             hhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccc-----------hHHHHHHHH
Confidence            44445555554444442     37899999999998876556667789999999999973           222333333


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD  308 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d  308 (334)
                      -..+.    .+.-||-|+||+||...-.                     +.+..-|.+- .++..     -....+||++
T Consensus       122 YlAle----~~LeIiPViNKIDLP~Adp---------------------ervk~eIe~~-iGid~-----~dav~~SAKt  170 (603)
T COG0481         122 YLALE----NNLEIIPVLNKIDLPAADP---------------------ERVKQEIEDI-IGIDA-----SDAVLVSAKT  170 (603)
T ss_pred             HHHHH----cCcEEEEeeecccCCCCCH---------------------HHHHHHHHHH-hCCCc-----chheeEeccc
Confidence            23333    3467899999999987533                     1111112211 22221     2357899999


Q ss_pred             CchHHHHHHHHHHHHH
Q psy3651         309 TENIKIVFNAVKNTIL  324 (334)
Q Consensus       309 ~~nI~~vf~~v~~~I~  324 (334)
                      |.||.++++.|.+.|-
T Consensus       171 G~gI~~iLe~Iv~~iP  186 (603)
T COG0481         171 GIGIEDVLEAIVEKIP  186 (603)
T ss_pred             CCCHHHHHHHHHhhCC
Confidence            9999999999887653

>PRK00007 elongation factor G; Reviewed

Probab=97.75  E-value=0.00023  Score=75.22  Aligned_cols=84  Identities=14%  Similarity=0.083  Sum_probs=60.3

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      |.-|+-.....+..++..+.+.||+|+..+-.--..-.+.+|++|+|+|.++-           -..+...++..+..  
T Consensus        59 rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g-----------~~~qt~~~~~~~~~--  125 (693)
T PRK00007         59 RGITITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGG-----------VEPQSETVWRQADK--  125 (693)
T ss_pred             CCCCEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCC-----------cchhhHHHHHHHHH--
Confidence            44455455667778899999999999876544344456789999999997752           23344566666554  


Q ss_pred             CCCCCcEEEEEeCCCcchh
Q psy3651         236 IFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~e  254 (334)
                        .+.|+|++.||+|+..+
T Consensus       126 --~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007        126 --YKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             --cCCCEEEEEECCCCCCC
Confidence              45789999999998753

>KOG1144|consensus

Probab=97.73  E-value=0.00019  Score=74.03  Aligned_cols=129  Identities=19%  Similarity=0.186  Sum_probs=84.3

Q ss_pred             eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      +.++||.|+++|-.+....-+.|+.+|.|+|+--=        --....||+.++..       +++|||+.+||+|.+-
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG--------lepqtiESi~lLR~-------rktpFivALNKiDRLY  606 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG--------LEPQTIESINLLRM-------RKTPFIVALNKIDRLY  606 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhcc--------CCcchhHHHHHHHh-------cCCCeEEeehhhhhhc
Confidence            67899999999998888877889999999999752        11455677777754       7899999999999643


Q ss_pred             h--hhccccchhhhhCCCCCCCCccHHHHHH-------HHHHHHHh--hc-------cCCCCCeEEEEEeeecCchHHHH
Q psy3651         254 E--KLRTSKTSIAEHFPEFEGDPQDMQAVQT-------FLLNYFKA--VK-------RDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       254 e--ki~~~~~~l~~~Fp~y~g~~~~~~~~~~-------fi~~~F~~--l~-------~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      .  ..  +..++.+.+..=      ..+++.       -|...|..  |+       ....+-+....|||..|+||-.+
T Consensus       607 gwk~~--p~~~i~~~lkkQ------~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdL  678 (1064)
T KOG1144|consen  607 GWKSC--PNAPIVEALKKQ------KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDL  678 (1064)
T ss_pred             ccccC--CCchHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHH
Confidence            1  11  233343322110      111222       22223322  11       11124466778999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         316 FNAVKNTILH  325 (334)
Q Consensus       316 f~~v~~~I~~  325 (334)
                      +-++...-..
T Consensus       679 l~llv~ltQk  688 (1064)
T KOG1144|consen  679 LLLLVQLTQK  688 (1064)
T ss_pred             HHHHHHHHHH
Confidence            9888765443

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.71  E-value=0.00021  Score=71.75  Aligned_cols=116  Identities=17%  Similarity=0.183  Sum_probs=71.4

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.++|++|++.+-+-...-...+|++++|+|..+-.       ......+.+.+.+.      +.-.++|+++||+|+
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~-------~~~qT~ehl~i~~~------lgi~~iIVvlNKiDl  183 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC-------PQPQTSEHLAAVEI------MKLKHIIILQNKIDL  183 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc-------cchhhHHHHHHHHH------cCCCcEEEEEecccc
Confidence            45789999999887665555667899999999998620       00112233322211      122478999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ....-      +.+.          .++..+++...    .   .....++.+||+++.||..+++.+.+.+
T Consensus       184 v~~~~------~~~~----------~~ei~~~l~~~----~---~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        184 VKEAQ------AQDQ----------YEEIRNFVKGT----I---ADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             cCHHH------HHHH----------HHHHHHHHHhh----c---cCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            64211      1110          11112222211    1   1356789999999999999888887644

>PRK00098 GTPase RsgA; Reviewed

Probab=97.68  E-value=0.00011  Score=69.68  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=53.8

Q ss_pred             ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCC
Q psy3651         193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG  272 (334)
Q Consensus       193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g  272 (334)
                      ..++|.+++|+|+++.+          .....+..|-..+..   .++|++|++||+||...+.  .   ...       
T Consensus        78 aaniD~vllV~d~~~p~----------~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~---~~~-------  132 (298)
T PRK00098         78 AANVDQAVLVFAAKEPD----------FSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE--E---ARE-------  132 (298)
T ss_pred             eecCCEEEEEEECCCCC----------CCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH--H---HHH-------
Confidence            48999999999998752          112222222222222   5689999999999853211  0   000       


Q ss_pred             CCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         273 DPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       273 ~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                                 ....+.      ...+.++.+||+++.|++++++.+..
T Consensus       133 -----------~~~~~~------~~g~~v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        133 -----------LLALYR------AIGYDVLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             -----------HHHHHH------HCCCeEEEEeCCCCccHHHHHhhccC
Confidence                       011111      12356889999999999999987753

>KOG1145|consensus

Probab=97.63  E-value=0.00022  Score=71.62  Aligned_cols=115  Identities=16%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +|.++.|.||.|+..|..+...=-.-+|.|++||+..|           .-+...++.....-    ..+.|+++.+||+
T Consensus       199 ~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD-----------GVmpQT~EaIkhAk----~A~VpiVvAinKi  263 (683)
T KOG1145|consen  199 SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD-----------GVMPQTLEAIKHAK----SANVPIVVAINKI  263 (683)
T ss_pred             CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC-----------CccHhHHHHHHHHH----hcCCCEEEEEecc
Confidence            57899999999999998888776677899999999887           44555444443332    3789999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      |..+..+.+...+|..+     |                ..+. .-...+.+..+||+.|+|+..+-+++.-
T Consensus       264 Dkp~a~pekv~~eL~~~-----g----------------i~~E-~~GGdVQvipiSAl~g~nl~~L~eaill  313 (683)
T KOG1145|consen  264 DKPGANPEKVKRELLSQ-----G----------------IVVE-DLGGDVQVIPISALTGENLDLLEEAILL  313 (683)
T ss_pred             CCCCCCHHHHHHHHHHc-----C----------------ccHH-HcCCceeEEEeecccCCChHHHHHHHHH
Confidence            98765441111122211     0                0000 1124688899999999999988777654

>KOG1490|consensus

Probab=97.62  E-value=0.00015  Score=72.09  Aligned_cols=122  Identities=17%  Similarity=0.248  Sum_probs=81.9

Q ss_pred             eCcceeeeecCCccc---ccccccccc------cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651         170 SNIPFLFVDVGGQRS---QRRKWFQCF------DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV  240 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~---~r~kw~~~f------~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~  240 (334)
                      +-..|++.||+|--.   +.+..+..-      .=-.+|+|+.|+|+-        ...+..+.+++|++|-  |.|.|.
T Consensus       213 kYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~--------CGySva~QvkLfhsIK--pLFaNK  282 (620)
T KOG1490|consen  213 KYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM--------CGYSVAAQVKLYHSIK--PLFANK  282 (620)
T ss_pred             heeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh--------hCCCHHHHHHHHHHhH--HHhcCC
Confidence            336789999988542   222222111      112689999999985        4478999999999994  679999


Q ss_pred             cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      |+||++||+|+..      .+++.+-          .++..+.+.         ...++.+..||..+.+||-.|=...+
T Consensus       283 ~~IlvlNK~D~m~------~edL~~~----------~~~ll~~~~---------~~~~v~v~~tS~~~eegVm~Vrt~AC  337 (620)
T KOG1490|consen  283 VTILVLNKIDAMR------PEDLDQK----------NQELLQTII---------DDGNVKVVQTSCVQEEGVMDVRTTAC  337 (620)
T ss_pred             ceEEEeecccccC------ccccCHH----------HHHHHHHHH---------hccCceEEEecccchhceeeHHHHHH
Confidence            9999999999853      2222210          011111111         12457889999999999998888888


Q ss_pred             HHHHHH
Q psy3651         321 NTILHR  326 (334)
Q Consensus       321 ~~I~~~  326 (334)
                      +.++..
T Consensus       338 e~LLa~  343 (620)
T KOG1490|consen  338 EALLAA  343 (620)
T ss_pred             HHHHHH
Confidence            777754

>COG1159 Era GTPase [General function prediction only]

Probab=97.59  E-value=0.00057  Score=64.12  Aligned_cols=113  Identities=21%  Similarity=0.256  Sum_probs=71.2

Q ss_pred             EeeCcceeeeecCCcccccccccc--------cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCC
Q psy3651         168 VISNIPFLFVDVGGQRSQRRKWFQ--------CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRN  239 (334)
Q Consensus       168 ~~~~~~~~i~DvgGq~~~r~kw~~--------~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~  239 (334)
                      +.++..+-+.||+|-...+.+--.        -+.+||.|+||+|..+.         ...-++  ...+.+.+    .+
T Consensus        50 t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~---------~~~~d~--~il~~lk~----~~  114 (298)
T COG1159          50 TTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG---------WGPGDE--FILEQLKK----TK  114 (298)
T ss_pred             EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc---------CCccHH--HHHHHHhh----cC
Confidence            345788899999998776554332        35789999999999983         022111  12222222    46


Q ss_pred             CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      +|++|++||+|....+.  .-.++.+                 +....        -.-...+.+||+.+.|+..+.+.+
T Consensus       115 ~pvil~iNKID~~~~~~--~l~~~~~-----------------~~~~~--------~~f~~ivpiSA~~g~n~~~L~~~i  167 (298)
T COG1159         115 TPVILVVNKIDKVKPKT--VLLKLIA-----------------FLKKL--------LPFKEIVPISALKGDNVDTLLEII  167 (298)
T ss_pred             CCeEEEEEccccCCcHH--HHHHHHH-----------------HHHhh--------CCcceEEEeeccccCCHHHHHHHH
Confidence            79999999999766532  1111111                 11111        011257899999999999988777


Q ss_pred             HHH
Q psy3651         320 KNT  322 (334)
Q Consensus       320 ~~~  322 (334)
                      ...
T Consensus       168 ~~~  170 (298)
T COG1159         168 KEY  170 (298)
T ss_pred             HHh
Confidence            654

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.56  E-value=0.00068  Score=67.02  Aligned_cols=136  Identities=15%  Similarity=0.223  Sum_probs=94.2

Q ss_pred             cccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         151 DILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       151 Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |+-+-|.-|+=...+.+.+++.++.|.||.|+..|----.....=||+|+.+||.++           ..|.+..-..+.
T Consensus        47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkK  115 (603)
T COG1217          47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKK  115 (603)
T ss_pred             chhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHH
Confidence            443445555555567788899999999999999876655666778999999999998           566666666666


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecC
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDT  309 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~  309 (334)
                      .+.    .+.+-|++.||+|....+.                     +.+.+-....|.++..... -.+++.+.||..|
T Consensus       116 Al~----~gL~PIVVvNKiDrp~Arp---------------------~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G  170 (603)
T COG1217         116 ALA----LGLKPIVVINKIDRPDARP---------------------DEVVDEVFDLFVELGATDEQLDFPIVYASARNG  170 (603)
T ss_pred             HHH----cCCCcEEEEeCCCCCCCCH---------------------HHHHHHHHHHHHHhCCChhhCCCcEEEeeccCc
Confidence            655    3456678899999877653                     2333344566777765433 5678888888765


Q ss_pred             c----------hHHHHHHHHHHH
Q psy3651         310 E----------NIKIVFNAVKNT  322 (334)
Q Consensus       310 ~----------nI~~vf~~v~~~  322 (334)
                      .          ++.-+|+.|.+.
T Consensus       171 ~a~~~~~~~~~~m~pLfe~I~~h  193 (603)
T COG1217         171 TASLDPEDEADDMAPLFETILDH  193 (603)
T ss_pred             eeccCccccccchhHHHHHHHHh
Confidence            3          455555555443

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.54  E-value=0.00045  Score=68.17  Aligned_cols=112  Identities=19%  Similarity=0.138  Sum_probs=71.8

Q ss_pred             EEEEeeCcceeeeecCCccccc---------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         165 FTIVISNIPFLFVDVGGQRSQR---------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       165 ~~~~~~~~~~~i~DvgGq~~~r---------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ....+.+..|.++||||-....         .+-..-.+.||+||||+|.-.=           -..+-..+.+-+.   
T Consensus        44 ~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~G-----------it~~D~~ia~~Lr---  109 (444)
T COG1160          44 GDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREG-----------ITPADEEIAKILR---  109 (444)
T ss_pred             ceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------CCHHHHHHHHHHH---
Confidence            3455677889999999988422         2233456789999999998761           1111112222222   


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                       -.+.|++|+.||+|-.....     ...++                      -++.-     -.++.+||..|.|+.++
T Consensus       110 -~~~kpviLvvNK~D~~~~e~-----~~~ef----------------------yslG~-----g~~~~ISA~Hg~Gi~dL  156 (444)
T COG1160         110 -RSKKPVILVVNKIDNLKAEE-----LAYEF----------------------YSLGF-----GEPVPISAEHGRGIGDL  156 (444)
T ss_pred             -hcCCCEEEEEEcccCchhhh-----hHHHH----------------------HhcCC-----CCceEeehhhccCHHHH
Confidence             14589999999999753211     11221                      11111     12678999999999999


Q ss_pred             HHHHHHHH
Q psy3651         316 FNAVKNTI  323 (334)
Q Consensus       316 f~~v~~~I  323 (334)
                      .++|...+
T Consensus       157 ld~v~~~l  164 (444)
T COG1160         157 LDAVLELL  164 (444)
T ss_pred             HHHHHhhc
Confidence            99988765

>cd01858 NGP_1 NGP-1

Probab=97.53  E-value=0.00037  Score=59.46  Aligned_cols=88  Identities=13%  Similarity=0.167  Sum_probs=52.8

Q ss_pred             ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCC
Q psy3651         193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG  272 (334)
Q Consensus       193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g  272 (334)
                      .+++|.|++|+|.++...        ..-.    .+...+.. ...+.|+++++||+|+..+.      .+..       
T Consensus         6 l~~aD~il~VvD~~~p~~--------~~~~----~i~~~l~~-~~~~~p~ilVlNKiDl~~~~------~~~~-------   59 (157)
T cd01858           6 IDSSDVVIQVLDARDPMG--------TRCK----HVEEYLKK-EKPHKHLIFVLNKCDLVPTW------VTAR-------   59 (157)
T ss_pred             hhhCCEEEEEEECCCCcc--------ccCH----HHHHHHHh-ccCCCCEEEEEEchhcCCHH------HHHH-------
Confidence            578999999999988511        1111    12222221 12357999999999985431      1111       


Q ss_pred             CCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         273 DPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       273 ~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                                ++.. |..     ......+.+||+.+.|+..+.+.+.+.
T Consensus        60 ----------~~~~-~~~-----~~~~~~~~iSa~~~~~~~~L~~~l~~~   93 (157)
T cd01858          60 ----------WVKI-LSK-----EYPTIAFHASINNPFGKGSLIQLLRQF   93 (157)
T ss_pred             ----------HHHH-Hhc-----CCcEEEEEeeccccccHHHHHHHHHHH
Confidence                      1111 111     122335779999999999998888764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12289 GTPase RsgA; Reviewed

Probab=97.50  E-value=0.00029  Score=68.47  Aligned_cols=88  Identities=14%  Similarity=0.164  Sum_probs=55.6

Q ss_pred             ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651         191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF  270 (334)
Q Consensus       191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y  270 (334)
                      ....++|.|++|+|+.+.+-      ....+...+.   .+ .   ..++|++|++||+||..+.-      +..     
T Consensus        85 ~~~aNvD~vLlV~d~~~p~~------~~~~LdR~L~---~a-~---~~~ip~ILVlNK~DLv~~~~------~~~-----  140 (352)
T PRK12289         85 PPVANADQILLVFALAEPPL------DPWQLSRFLV---KA-E---STGLEIVLCLNKADLVSPTE------QQQ-----  140 (352)
T ss_pred             hhhhcCCEEEEEEECCCCCC------CHHHHHHHHH---HH-H---HCCCCEEEEEEchhcCChHH------HHH-----
Confidence            35789999999999987520      0012222222   11 1   25689999999999854210      111     


Q ss_pred             CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                                  + .+.|..      ..+.++++||+++.|+.++++.+.+
T Consensus       141 ------------~-~~~~~~------~g~~v~~iSA~tg~GI~eL~~~L~~  172 (352)
T PRK12289        141 ------------W-QDRLQQ------WGYQPLFISVETGIGLEALLEQLRN  172 (352)
T ss_pred             ------------H-HHHHHh------cCCeEEEEEcCCCCCHHHHhhhhcc
Confidence                        1 112211      2356789999999999999988875

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00023  Score=69.43  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      |.|-.|+-+....|+.....+.|+|+.|+|.+-+..+.-.+.+|+.|+|+|.++-. ...--.......|.+-+-..   
T Consensus        67 RerGvTi~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~~La~t---  142 (428)
T COG5256          67 RERGVTIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHAFLART---  142 (428)
T ss_pred             HhcceEEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHHHHHHh---
Confidence            45667787888888888899999999999999988888899999999999998741 00000011233344333322   


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                         +.-..+|++.||+|+..-    ....+              +++.+-+......+.. ..+.+.+..+||..|.|+.
T Consensus       143 ---lGi~~lIVavNKMD~v~w----de~rf--------------~ei~~~v~~l~k~~G~-~~~~v~FIPiSg~~G~Nl~  200 (428)
T COG5256         143 ---LGIKQLIVAVNKMDLVSW----DEERF--------------EEIVSEVSKLLKMVGY-NPKDVPFIPISGFKGDNLT  200 (428)
T ss_pred             ---cCCceEEEEEEccccccc----CHHHH--------------HHHHHHHHHHHHHcCC-CccCCeEEecccccCCccc
Confidence               233478999999998641    11111              2222222221111221 2246889999999999986


Q ss_pred             H
Q psy3651         314 I  314 (334)
Q Consensus       314 ~  314 (334)
                      +
T Consensus       201 ~  201 (428)
T COG5256         201 K  201 (428)
T ss_pred             c
Confidence            5

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=97.46  E-value=0.00014  Score=76.99  Aligned_cols=72  Identities=18%  Similarity=0.259  Sum_probs=53.8

Q ss_pred             EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      ++.++..+.+|||+|+..+...-...++.+|++|+|+|..+-           ...+...++....+    .+.|+++|+
T Consensus        81 ~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g-----------~~~~t~~~~~~~~~----~~~p~ivvi  145 (720)
T TIGR00490        81 YEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEG-----------VMPQTETVLRQALK----ENVKPVLFI  145 (720)
T ss_pred             ecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCC-----------CCccHHHHHHHHHH----cCCCEEEEE
Confidence            445678899999999998877777789999999999998762           12233444544333    356888999


Q ss_pred             eCCCcch
Q psy3651         247 NKTDLLA  253 (334)
Q Consensus       247 NK~Dl~~  253 (334)
                      ||+|...
T Consensus       146 NKiD~~~  152 (720)
T TIGR00490       146 NKVDRLI  152 (720)
T ss_pred             EChhccc
Confidence            9999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.43  E-value=0.00074  Score=64.75  Aligned_cols=37  Identities=19%  Similarity=0.455  Sum_probs=28.4

Q ss_pred             CcceeeeecCCc----ccccc---cccccccCCCeEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQ----RSQRR---KWFQCFDSVTSILFLVSSSE  207 (334)
Q Consensus       171 ~~~~~i~DvgGq----~~~r~---kw~~~f~~v~~iIfv~dls~  207 (334)
                      .+.+++|||+|+    ...+.   +....+++||++++|+|+++
T Consensus        68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            367999999998    33333   33345899999999999985

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01850 CDC_Septin CDC/Septin

Probab=97.39  E-value=0.00074  Score=63.44  Aligned_cols=81  Identities=19%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             eeecceeEEEEEe--eC--cceeeeecCC--------------------------ccccccccccccc--CCCeEEEEEe
Q psy3651         157 KATKGITEFTIVI--SN--IPFLFVDVGG--------------------------QRSQRRKWFQCFD--SVTSILFLVS  204 (334)
Q Consensus       157 ~~T~Gi~~~~~~~--~~--~~~~i~DvgG--------------------------q~~~r~kw~~~f~--~v~~iIfv~d  204 (334)
                      .+|+++......+  ++  +++.+|||+|                          ++..+..+...+.  .+++++|+++
T Consensus        44 ~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~  123 (276)
T cd01850          44 DKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIE  123 (276)
T ss_pred             CCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEe
Confidence            4566665444333  34  6799999999                          3333344435555  4788999998


Q ss_pred             CCCccchhhcccccccHHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         205 SSEYDQTLVEDRRTNRLHES-RNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       205 ls~~d~~l~ed~~~nrl~es-l~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      .+..           .+... +++++.+..     .+|+++|+||+|++.
T Consensus       124 ~~~~-----------~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~  157 (276)
T cd01850         124 PTGH-----------GLKPLDIEFMKRLSK-----RVNIIPVIAKADTLT  157 (276)
T ss_pred             CCCC-----------CCCHHHHHHHHHHhc-----cCCEEEEEECCCcCC
Confidence            7763           22222 666666643     479999999999855

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.38  E-value=0.0024  Score=56.70  Aligned_cols=126  Identities=9%  Similarity=0.013  Sum_probs=66.1

Q ss_pred             cceeeeecCCccccccccccc-----ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQC-----FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~-----f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      ..+.+||+.|.......-..|     +.+++.+|+|.+              .++.+.-..+-..+..   .+.|+++|+
T Consensus        52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--------------~~~~~~d~~~~~~l~~---~~~~~ilV~  114 (197)
T cd04104          52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--------------TRFSSNDVKLAKAIQC---MGKKFYFVR  114 (197)
T ss_pred             CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--------------CCCCHHHHHHHHHHHH---hCCCEEEEE
Confidence            478999999986432222223     677898888743              2233333333333332   257999999


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeee--cCchHHHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAV--DTENIKIVFNAVKNTI  323 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~--d~~nI~~vf~~v~~~I  323 (334)
                      ||+|+....-  .....+         ....+...+-+++...+...... ..-.++.+||.  .+.++..+.+.+...+
T Consensus       115 nK~D~~~~~~--~~~~~~---------~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l  183 (197)
T cd04104         115 TKVDRDLSNE--QRSKPR---------SFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL  183 (197)
T ss_pred             ecccchhhhh--hccccc---------cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence            9999843110  000000         00112223333333333222111 22357889998  4578777777777666


Q ss_pred             HH
Q psy3651         324 LH  325 (334)
Q Consensus       324 ~~  325 (334)
                      -.
T Consensus       184 ~~  185 (197)
T cd04104         184 PA  185 (197)
T ss_pred             hH
Confidence            53

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.27  E-value=0.00084  Score=63.40  Aligned_cols=88  Identities=16%  Similarity=0.051  Sum_probs=54.9

Q ss_pred             ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651         191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF  270 (334)
Q Consensus       191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y  270 (334)
                      ....++|.+++|+|+.+..      .+...++..   +..+..    .++|++|++||+||..+.-   .   ..     
T Consensus        74 ~i~anvD~vllV~d~~~p~------~s~~~ldr~---L~~~~~----~~ip~iIVlNK~DL~~~~~---~---~~-----  129 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPF------FNPRLLDRY---LVAAEA----AGIEPVIVLTKADLLDDEE---E---EL-----  129 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCC------CCHHHHHHH---HHHHHH----cCCCEEEEEEHHHCCChHH---H---HH-----
Confidence            4578999999999998751      011222222   222221    4689999999999854310   0   00     


Q ss_pred             CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                                   ....+.      ...+.++.+||+++.|+++++..+..
T Consensus       130 -------------~~~~~~------~~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         130 -------------ELVEAL------ALGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -------------HHHHHH------hCCCeEEEEECCCCccHHHHHhhhcc
Confidence                         000111      12356789999999999999888764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG1489|consensus

Probab=97.23  E-value=0.0036  Score=59.33  Aligned_cols=125  Identities=15%  Similarity=0.234  Sum_probs=74.6

Q ss_pred             eeeecceeEEEEEeeCc-ceeeeecCCccc----ccc---cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         156 RKATKGITEFTIVISNI-PFLFVDVGGQRS----QRR---KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~-~~~i~DvgGq~~----~r~---kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      -.|++|.    +.+++. .+.+-|+.|--.    -|-   +.....+-++.++||+|+|....       .+-++.-..+
T Consensus       231 L~P~iG~----v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL  299 (366)
T KOG1489|consen  231 LRPHIGT----VNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLL  299 (366)
T ss_pred             eccccce----eeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHH
Confidence            3566773    223332 388999987543    222   23344567999999999999721       1233333333


Q ss_pred             HHHHHh-hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEee
Q psy3651         228 FDTIIN-NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA  306 (334)
Q Consensus       228 f~~i~~-~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA  306 (334)
                      +.++-. ...+.+.|.++|+||+|+.+..    .                     +++.+....+.     +-.++.+||
T Consensus       300 ~~ELe~yek~L~~rp~liVaNKiD~~eae----~---------------------~~l~~L~~~lq-----~~~V~pvsA  349 (366)
T KOG1489|consen  300 IEELELYEKGLADRPALIVANKIDLPEAE----K---------------------NLLSSLAKRLQ-----NPHVVPVSA  349 (366)
T ss_pred             HHHHHHHhhhhccCceEEEEeccCchhHH----H---------------------HHHHHHHHHcC-----CCcEEEeee
Confidence            333321 1345677999999999995431    1                     12222222221     125789999


Q ss_pred             ecCchHHHHHHHHHH
Q psy3651         307 VDTENIKIVFNAVKN  321 (334)
Q Consensus       307 ~d~~nI~~vf~~v~~  321 (334)
                      +.++++..+.+.+..
T Consensus       350 ~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  350 KSGEGLEELLNGLRE  364 (366)
T ss_pred             ccccchHHHHHHHhh
Confidence            999999998877654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.18  E-value=0.00032  Score=64.55  Aligned_cols=132  Identities=18%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             ceeeeecCCcccccccccccc--------cCCCeEEEEEeCCCccchhhcccccccHHHH-HHHHHHHHhhcCCCCCcEE
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCF--------DSVTSILFLVSSSEYDQTLVEDRRTNRLHES-RNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f--------~~v~~iIfv~dls~~d~~l~ed~~~nrl~es-l~lf~~i~~~~~~~~~pii  243 (334)
                      .+-++|++||-..-..|...-        ...-+++|++|.+-....       ..+-.+ +.-+...++    -+.|.|
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~-------~~f~s~~L~s~s~~~~----~~lP~v  160 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDP-------SKFVSSLLLSLSIMLR----LELPHV  160 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSH-------HHHHHHHHHHHHHHHH----HTSEEE
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccCh-------hhHHHHHHHHHHHHhh----CCCCEE
Confidence            467999999998766665544        466799999998865210       222222 222222232    468999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHH----HHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAV----QTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~----~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      .++||+|+..+..    ...-+++.+.    ......    ..-+.+....+-........++..|+.+++++.+++..|
T Consensus       161 nvlsK~Dl~~~~~----~~~l~~~~d~----~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i  232 (238)
T PF03029_consen  161 NVLSKIDLLSKYL----EFILEWFEDP----DSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI  232 (238)
T ss_dssp             EEE--GGGS-HHH----HHHHHHHHSH----HHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred             EeeeccCcccchh----HHHHHHhcCh----HHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence            9999999987432    1122222111    001110    011111111221111222378999999999999999888


Q ss_pred             HHHH
Q psy3651         320 KNTI  323 (334)
Q Consensus       320 ~~~I  323 (334)
                      -+.+
T Consensus       233 d~a~  236 (238)
T PF03029_consen  233 DKAN  236 (238)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7653

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG1707|consensus

Probab=97.07  E-value=0.0011  Score=67.03  Aligned_cols=121  Identities=14%  Similarity=0.214  Sum_probs=76.6

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccH-HHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL-HESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl-~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+...+.|++.....|-.-.+=.+.+++|..|++.++..       +..++ ..++-++++....  ..++||||++||.
T Consensus        55 ~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~-------T~D~ist~WLPlir~~~~~--~~~~PVILvGNK~  125 (625)
T KOG1707|consen   55 NVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES-------TVDRISTKWLPLIRQLFGD--YHETPVILVGNKS  125 (625)
T ss_pred             cCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH-------HhhhhhhhhhhhhhcccCC--CccCCEEEEeecc
Confidence            344668899855554544467789999999999998851       11222 2234444443321  3679999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+-....  .                ..+....=|-..|.++..       ++.|||+.-.|+.++|....+.|+.
T Consensus       126 d~~~~~~--~----------------s~e~~~~pim~~f~EiEt-------ciecSA~~~~n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  126 DNGDNEN--N----------------SDEVNTLPIMIAFAEIET-------CIECSALTLANVSELFYYAQKAVIH  176 (625)
T ss_pred             CCccccc--c----------------chhHHHHHHHHHhHHHHH-------HHhhhhhhhhhhHhhhhhhhheeec
Confidence            9865422  1                111112233444444433       5789999999999999888877764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.06  E-value=0.0045  Score=54.71  Aligned_cols=136  Identities=10%  Similarity=0.120  Sum_probs=78.9

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccccc-----------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQR-----------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r-----------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      |.........+++..+.++||+|-....           +.+..+..++++||||+++..+.         ..-.+.++.
T Consensus        36 T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t---------~~d~~~l~~  106 (196)
T cd01852          36 TKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFT---------EEEEQAVET  106 (196)
T ss_pred             ccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcC---------HHHHHHHHH
Confidence            4445555666688899999999965421           11223457899999999987742         233455666


Q ss_pred             HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE-E--
Q psy3651         228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF-T--  304 (334)
Q Consensus       228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~-t--  304 (334)
                      +.+++.....  .++++++|+.|....      ..+.++..          ....+++..-.   .. ...+..+- .  
T Consensus       107 l~~~fg~~~~--~~~ivv~T~~d~l~~------~~~~~~~~----------~~~~~l~~l~~---~c-~~r~~~f~~~~~  164 (196)
T cd01852         107 LQELFGEKVL--DHTIVLFTRGDDLEG------GTLEDYLE----------NSCEALKRLLE---KC-GGRYVAFNNKAK  164 (196)
T ss_pred             HHHHhChHhH--hcEEEEEECccccCC------CcHHHHHH----------hccHHHHHHHH---Hh-CCeEEEEeCCCC
Confidence            6666543222  378899999995432      23444321          01112222111   11 11221221 2  


Q ss_pred             eeecCchHHHHHHHHHHHHHH
Q psy3651         305 TAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       305 sA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ++.++.++.++++.|.+++..
T Consensus       165 ~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         165 GEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             cchhHHHHHHHHHHHHHHHHh
Confidence            267788999999999888765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG2262 HflX GTPases [General function prediction only]

Probab=97.05  E-value=0.0076  Score=58.92  Aligned_cols=122  Identities=21%  Similarity=0.282  Sum_probs=77.5

Q ss_pred             cceeEEEEEee-CcceeeeecCCcccccccccc-cc-------cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         160 KGITEFTIVIS-NIPFLFVDVGGQRSQRRKWFQ-CF-------DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       160 ~Gi~~~~~~~~-~~~~~i~DvgGq~~~r~kw~~-~f-------~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      .......+.+. +..+-+-||-|=-+.-.-|.- -|       ..+|.++.|+|.|+.+-       ...++.+...+.+
T Consensus       227 LdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~-------~~~~~~v~~vL~e  299 (411)
T COG2262         227 LDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEI-------LEKLEAVEDVLAE  299 (411)
T ss_pred             ccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhH-------HHHHHHHHHHHHH
Confidence            33334455555 578889999886554444431 23       26899999999999621       1344444444444


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +    .....|+|+++||+|+.....     .+..                         +...  .+ ...++||+++.
T Consensus       300 l----~~~~~p~i~v~NKiD~~~~~~-----~~~~-------------------------~~~~--~~-~~v~iSA~~~~  342 (411)
T COG2262         300 I----GADEIPIILVLNKIDLLEDEE-----ILAE-------------------------LERG--SP-NPVFISAKTGE  342 (411)
T ss_pred             c----CCCCCCEEEEEecccccCchh-----hhhh-------------------------hhhc--CC-CeEEEEeccCc
Confidence            4    345689999999999754311     0100                         0001  11 36889999999


Q ss_pred             hHHHHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNTILH  325 (334)
Q Consensus       311 nI~~vf~~v~~~I~~  325 (334)
                      |++.+.+.+.+.+..
T Consensus       343 gl~~L~~~i~~~l~~  357 (411)
T COG2262         343 GLDLLRERIIELLSG  357 (411)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            999999888887763

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=96.97  E-value=0.0093  Score=57.11  Aligned_cols=133  Identities=16%  Similarity=0.227  Sum_probs=83.3

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      -.|.+|+...   ..+..|.|=|+.|--.-.       -....+.+-+..+++|+|++..|..       +-.++...+.
T Consensus       194 L~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~-------dp~~~~~~i~  263 (369)
T COG0536         194 LVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGR-------DPIEDYQTIR  263 (369)
T ss_pred             ccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCC-------CHHHHHHHHH
Confidence            4678887654   345678899998764311       1233445678999999999987421       2344444444


Q ss_pred             HHHHhh-cCCCCCcEEEEEeCCCcch--hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEe
Q psy3651         229 DTIINN-VIFRNVSFILFLNKTDLLA--EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTT  305 (334)
Q Consensus       229 ~~i~~~-~~~~~~piiL~lNK~Dl~~--eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~ts  305 (334)
                      .++-.. +.+.+.|.+|++||+|+..  +.+    ..+.                 +++.+.       ......++ +|
T Consensus       264 ~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~----~~~~-----------------~~l~~~-------~~~~~~~~-IS  314 (369)
T COG0536         264 NELEKYSPKLAEKPRIVVLNKIDLPLDEEEL----EELK-----------------KALAEA-------LGWEVFYL-IS  314 (369)
T ss_pred             HHHHHhhHHhccCceEEEEeccCCCcCHHHH----HHHH-----------------HHHHHh-------cCCCccee-ee
Confidence            444333 5678889999999999533  221    1111                 122211       11122222 99


Q ss_pred             eecCchHHHHHHHHHHHHHHHh
Q psy3651         306 AVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       306 A~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      |.++++++.+...+.+.+-+..
T Consensus       315 a~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         315 ALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hhcccCHHHHHHHHHHHHHHhh
Confidence            9999999999999998877654

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=96.97  E-value=0.0043  Score=64.08  Aligned_cols=117  Identities=15%  Similarity=0.082  Sum_probs=81.3

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccc------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRR------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |+--.+..+..++..+++.|..|--+...      .-.+|.  .++|.||-|+|.++.             +.++.+.-+
T Consensus        37 TVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnL-------------eRnLyltlQ  103 (653)
T COG0370          37 TVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNL-------------ERNLYLTLQ  103 (653)
T ss_pred             eEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchH-------------HHHHHHHHH
Confidence            44444667778889999999999877432      334454  367999999999985             344555555


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +..    -+.|+++++|+.|..+++    ...+..                       ..+.+  .-++++..|+|+.|.
T Consensus       104 LlE----~g~p~ilaLNm~D~A~~~----Gi~ID~-----------------------~~L~~--~LGvPVv~tvA~~g~  150 (653)
T COG0370         104 LLE----LGIPMILALNMIDEAKKR----GIRIDI-----------------------EKLSK--LLGVPVVPTVAKRGE  150 (653)
T ss_pred             HHH----cCCCeEEEeccHhhHHhc----CCcccH-----------------------HHHHH--HhCCCEEEEEeecCC
Confidence            554    467899999999987652    222211                       11111  246789999999999


Q ss_pred             hHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKN  321 (334)
Q Consensus       311 nI~~vf~~v~~  321 (334)
                      |++++.+.+.+
T Consensus       151 G~~~l~~~i~~  161 (653)
T COG0370         151 GLEELKRAIIE  161 (653)
T ss_pred             CHHHHHHHHHH
Confidence            99998887765

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=96.95  E-value=0.0034  Score=53.37  Aligned_cols=83  Identities=20%  Similarity=0.318  Sum_probs=49.3

Q ss_pred             CeEEEEEeCCCccchhhcccccccHHHHHHHHH-HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCc
Q psy3651         197 TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD-TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ  275 (334)
Q Consensus       197 ~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~-~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~  275 (334)
                      |.+|+|+|.++...        .. ..   ++. ..+.   ..+.|+++++||+|+..+..      +..          
T Consensus         1 Dvvl~VvD~~~p~~--------~~-~~---~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~------~~~----------   49 (155)
T cd01849           1 DVILEVLDARDPLG--------TR-SP---DIERVLIK---EKGKKLILVLNKADLVPKEV------LRK----------   49 (155)
T ss_pred             CEEEEEEeccCCcc--------cc-CH---HHHHHHHh---cCCCCEEEEEechhcCCHHH------HHH----------
Confidence            57999999987511        11 11   111 2222   24689999999999854310      111          


Q ss_pred             cHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       276 ~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                             ++ ..|...     ....++.+||+++.++..+.+.+.+..
T Consensus        50 -------~~-~~~~~~-----~~~~ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          50 -------WL-AYLRHS-----YPTIPFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             -------HH-HHHHhh-----CCceEEEEeccCCcChhhHHHHHHHHh
Confidence                   11 111111     123468899999999999998887653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PTZ00416 elongation factor 2; Provisional

Probab=96.94  E-value=0.0012  Score=71.19  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+.||+|+..+-.--....+.+|++|+|+|.++-           -......+|+.+..    .+.|+|+|+||+|
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g-----------~~~~t~~~~~~~~~----~~~p~iv~iNK~D  155 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG-----------VCVQTETVLRQALQ----ERIRPVLFINKVD  155 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC-----------cCccHHHHHHHHHH----cCCCEEEEEEChh
Confidence            56799999999988766666678899999999998872           23334456666655    3579999999999


Q ss_pred             cc
Q psy3651         251 LL  252 (334)
Q Consensus       251 l~  252 (334)
                      +.
T Consensus       156 ~~  157 (836)
T PTZ00416        156 RA  157 (836)
T ss_pred             hh
Confidence            97

>PRK12288 GTPase RsgA; Reviewed

Probab=96.91  E-value=0.0039  Score=60.55  Aligned_cols=87  Identities=14%  Similarity=0.171  Sum_probs=53.4

Q ss_pred             cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCC
Q psy3651         194 DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGD  273 (334)
Q Consensus       194 ~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~  273 (334)
                      .|+|.++.|++++..       .+...++..+...    .   ..++|++|++||+||....   ....+..        
T Consensus       119 ANvD~vlIV~s~~p~-------~s~~~Ldr~L~~a----~---~~~i~~VIVlNK~DL~~~~---~~~~~~~--------  173 (347)
T PRK12288        119 ANIDQIVIVSAVLPE-------LSLNIIDRYLVAC----E---TLGIEPLIVLNKIDLLDDE---GRAFVNE--------  173 (347)
T ss_pred             EEccEEEEEEeCCCC-------CCHHHHHHHHHHH----H---hcCCCEEEEEECccCCCcH---HHHHHHH--------
Confidence            579999999997643       1113333333222    2   2568999999999996431   0000111        


Q ss_pred             CccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         274 PQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       274 ~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                               ++ +.|..      ..+.++.+||+++.|+.++++.+..
T Consensus       174 ---------~~-~~y~~------~g~~v~~vSA~tg~GideL~~~L~~  205 (347)
T PRK12288        174 ---------QL-DIYRN------IGYRVLMVSSHTGEGLEELEAALTG  205 (347)
T ss_pred             ---------HH-HHHHh------CCCeEEEEeCCCCcCHHHHHHHHhh
Confidence                     11 11111      2356889999999999999998865

>PRK13796 GTPase YqeH; Provisional

Probab=96.77  E-value=0.0059  Score=59.69  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=52.6

Q ss_pred             CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCcc
Q psy3651         197 TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQD  276 (334)
Q Consensus       197 ~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~  276 (334)
                      ..|++|+|+.++..         ++..   .+....     .+.|++|++||+||.....  .                 
T Consensus        71 ~lIv~VVD~~D~~~---------s~~~---~L~~~~-----~~kpviLViNK~DLl~~~~--~-----------------  114 (365)
T PRK13796         71 ALVVNVVDIFDFNG---------SWIP---GLHRFV-----GNNPVLLVGNKADLLPKSV--K-----------------  114 (365)
T ss_pred             cEEEEEEECccCCC---------chhH---HHHHHh-----CCCCEEEEEEchhhCCCcc--C-----------------
Confidence            48999999998731         2211   222222     3578999999999964321  1                 


Q ss_pred             HHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         277 MQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       277 ~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      .+.+.+++...+....-   ....++.+||+++.|++++++.+.+.
T Consensus       115 ~~~i~~~l~~~~k~~g~---~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        115 KNKVKNWLRQEAKELGL---RPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             HHHHHHHHHHHHHhcCC---CcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            11222344433222110   11247899999999999999998653

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.75  E-value=0.005  Score=52.17  Aligned_cols=97  Identities=20%  Similarity=0.334  Sum_probs=63.9

Q ss_pred             eeecCCcccccccccccc----cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         176 FVDVGGQRSQRRKWFQCF----DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       176 i~DvgGq~~~r~kw~~~f----~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ++||.|---+.+.+.+..    .+|+.|++|.|.++.....         .-.   |..     .| +.|+|=|.||+|+
T Consensus        40 ~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~---------pP~---fa~-----~f-~~pvIGVITK~Dl  101 (143)
T PF10662_consen   40 TIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVF---------PPG---FAS-----MF-NKPVIGVITKIDL  101 (143)
T ss_pred             EEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccC---------Cch---hhc-----cc-CCCEEEEEECccC
Confidence            589999887776655443    4899999999999863211         110   111     12 4699999999999


Q ss_pred             c--hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         252 L--AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       252 ~--~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      .  .+.+                     +.|.++++.       +.-+.  ++.+||.+++||+++.+++.
T Consensus       102 ~~~~~~i---------------------~~a~~~L~~-------aG~~~--if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  102 PSDDANI---------------------ERAKKWLKN-------AGVKE--IFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             ccchhhH---------------------HHHHHHHHH-------cCCCC--eEEEECCCCcCHHHHHHHHh
Confidence            8  3322                     222222222       11233  48999999999999988775

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=96.74  E-value=0.002  Score=69.62  Aligned_cols=67  Identities=13%  Similarity=0.151  Sum_probs=53.6

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.++||.|+..+-.--....+.+|++|+|+|.++-           -......+|+.+..    .+.|+++|+||+|
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G-----------v~~~t~~~~~~~~~----~~~p~i~~iNK~D  161 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG-----------VCVQTETVLRQALG----ERIRPVLTVNKMD  161 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC-----------CcccHHHHHHHHHH----CCCCEEEEEECCc
Confidence            57789999999998877667778899999999998872           33344556766654    5689999999999


Q ss_pred             cc
Q psy3651         251 LL  252 (334)
Q Consensus       251 l~  252 (334)
                      +.
T Consensus       162 ~~  163 (843)
T PLN00116        162 RC  163 (843)
T ss_pred             cc
Confidence            97

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.67  E-value=0.0078  Score=48.28  Aligned_cols=69  Identities=23%  Similarity=0.370  Sum_probs=45.2

Q ss_pred             EEEEEeeCcceeeeecCCcccccc---------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRR---------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~---------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ...+.+.+..+.++|++|-.....         ......+.++++|||+|.++.           .-....++++.+ + 
T Consensus        39 ~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~-----------~~~~~~~~~~~l-~-  105 (116)
T PF01926_consen   39 YGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNP-----------ITEDDKNILREL-K-  105 (116)
T ss_dssp             EEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSH-----------SHHHHHHHHHHH-H-
T ss_pred             eeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCC-----------CCHHHHHHHHHH-h-
Confidence            345566788889999999754211         122334789999999996652           112233444444 2 


Q ss_pred             cCCCCCcEEEEEeC
Q psy3651         235 VIFRNVSFILFLNK  248 (334)
Q Consensus       235 ~~~~~~piiL~lNK  248 (334)
                         .+.|+++++||
T Consensus       106 ---~~~~~i~v~NK  116 (116)
T PF01926_consen  106 ---NKKPIILVLNK  116 (116)
T ss_dssp             ---TTSEEEEEEES
T ss_pred             ---cCCCEEEEEcC
Confidence               66899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=96.61  E-value=0.0033  Score=52.61  Aligned_cols=48  Identities=23%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      .+++|++++|+|..+...        ..-.+-    ...+... ..+.|+++++||+|+..
T Consensus         9 i~~aD~vl~ViD~~~p~~--------~~~~~l----~~~l~~~-~~~k~~iivlNK~DL~~   56 (141)
T cd01857           9 VERSDIVVQIVDARNPLL--------FRPPDL----ERYVKEV-DPRKKNILLLNKADLLT   56 (141)
T ss_pred             HhhCCEEEEEEEccCCcc--------cCCHHH----HHHHHhc-cCCCcEEEEEechhcCC
Confidence            468999999999877521        111111    1222211 25689999999999854

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK07560 elongation factor EF-2; Reviewed

Probab=96.60  E-value=0.0023  Score=68.14  Aligned_cols=70  Identities=17%  Similarity=0.287  Sum_probs=52.1

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ++..+.++||+|+..+...-....+.+|++|+|+|..+-           .......++..+...    +.|.|+|+||+
T Consensus        85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g-----------~~~~t~~~~~~~~~~----~~~~iv~iNK~  149 (731)
T PRK07560         85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEG-----------VMPQTETVLRQALRE----RVKPVLFINKV  149 (731)
T ss_pred             CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCC-----------CCccHHHHHHHHHHc----CCCeEEEEECc
Confidence            367889999999998766666778899999999998762           223445556554432    45789999999


Q ss_pred             Ccchh
Q psy3651         250 DLLAE  254 (334)
Q Consensus       250 Dl~~e  254 (334)
                      |+...
T Consensus       150 D~~~~  154 (731)
T PRK07560        150 DRLIK  154 (731)
T ss_pred             hhhcc
Confidence            98643

>cd01856 YlqF YlqF

Probab=96.55  E-value=0.0029  Score=54.77  Aligned_cols=86  Identities=22%  Similarity=0.243  Sum_probs=52.7

Q ss_pred             ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651         191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF  270 (334)
Q Consensus       191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y  270 (334)
                      ....++|.|++|+|.++....        .-.+   +.+.      ..+.|+++++||+|+..+..      +..     
T Consensus        15 ~~i~~aD~il~v~D~~~~~~~--------~~~~---i~~~------~~~k~~ilVlNK~Dl~~~~~------~~~-----   66 (171)
T cd01856          15 EKLKLVDLVIEVRDARIPLSS--------RNPL---LEKI------LGNKPRIIVLNKADLADPKK------TKK-----   66 (171)
T ss_pred             HHHhhCCEEEEEeeccCccCc--------CChh---hHhH------hcCCCEEEEEehhhcCChHH------HHH-----
Confidence            346789999999999865211        1011   1111      23468999999999853311      101     


Q ss_pred             CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                                  ++ +.+..      ....++.+||+++.|++++.+.+...+
T Consensus        67 ------------~~-~~~~~------~~~~vi~iSa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          67 ------------WL-KYFES------KGEKVLFVNAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ------------HH-HHHHh------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence                        11 01111      113467899999999999998888765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00101 ureG urease accessory protein UreG

Probab=96.54  E-value=0.0053  Score=54.84  Aligned_cols=26  Identities=15%  Similarity=0.143  Sum_probs=22.6

Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ...+++|||++|+||+++|+++.+..
T Consensus       170 ~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       170 EKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            35688999999999999999998654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1191|consensus

Probab=96.35  E-value=0.024  Score=56.66  Aligned_cols=132  Identities=17%  Similarity=0.243  Sum_probs=78.4

Q ss_pred             cceeEEEEEeeCcceeeeecCCcccccccccc---------cccCCCeEEEEEeC--CCccchhhcccccccHHHHHHHH
Q psy3651         160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQ---------CFDSVTSILFLVSS--SEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~---------~f~~v~~iIfv~dl--s~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      ....+..|+++|+++.+.||+|-|.++..-..         -...+|.|++|+|.  ++..+          -.......
T Consensus       304 RDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~s----------d~~i~~~l  373 (531)
T KOG1191|consen  304 RDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTES----------DLKIARIL  373 (531)
T ss_pred             hhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEeccccccccc----------chHHHHHH
Confidence            33457889999999999999999984433221         23568999999999  44311          11111111


Q ss_pred             HHHH-----hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE
Q psy3651         229 DTII-----NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF  303 (334)
Q Consensus       229 ~~i~-----~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~  303 (334)
                      +..-     ..+.....+++++.||.|+... +           |++++.+..      |+..       .....+..+.
T Consensus       374 ~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~-~-----------~~~~~~~~~------~~~~-------~~~~~~~i~~  428 (531)
T KOG1191|consen  374 ETEGVGLVVIVNKMEKQRIILVANKSDLVSK-I-----------PEMTKIPVV------YPSA-------EGRSVFPIVV  428 (531)
T ss_pred             HHhccceEEEeccccccceEEEechhhccCc-c-----------ccccCCcee------cccc-------ccCcccceEE
Confidence            1111     1112245799999999998553 2           112221110      0000       0011244555


Q ss_pred             -EeeecCchHHHHHHHHHHHHHHH
Q psy3651         304 -TTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       304 -tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                       +|++++++++.+...+.++....
T Consensus       429 ~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  429 EVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             EeeechhhhHHHHHHHHHHHHHHh
Confidence             99999999999998888877654

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.35  E-value=0.022  Score=50.90  Aligned_cols=25  Identities=4%  Similarity=-0.065  Sum_probs=22.0

Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ...++.+||+++.||+++|+++.+.
T Consensus       181 ~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       181 EAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.32  E-value=0.012  Score=55.20  Aligned_cols=88  Identities=17%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651         191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF  270 (334)
Q Consensus       191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y  270 (334)
                      ...+.+|.||+|+|..+...        .+- .   .+...+     .+.|+++|+||+|+..+..      ...+    
T Consensus        17 ~~l~~aDvVl~V~Dar~p~~--------~~~-~---~i~~~l-----~~kp~IiVlNK~DL~~~~~------~~~~----   69 (276)
T TIGR03596        17 EKLKLVDVVIEVLDARIPLS--------SRN-P---MIDEIR-----GNKPRLIVLNKADLADPAV------TKQW----   69 (276)
T ss_pred             HHHhhCCEEEEEEeCCCCCC--------CCC-h---hHHHHH-----CCCCEEEEEEccccCCHHH------HHHH----
Confidence            34678999999999876411        110 1   112222     2579999999999853210      1110    


Q ss_pred             CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                                .+++    ..      ....++.+||+++.+++.+.+.+.+.+-.
T Consensus        70 ----------~~~~----~~------~~~~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        70 ----------LKYF----EE------KGIKALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             ----------HHHH----HH------cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                      0111    11      12346889999999999998888776543

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.026  Score=54.40  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |+.+.-..|.-...+|-+-||+|++.+-|....=-+.|+++|.++|.-.           .-++.+.. ...|..  .+.
T Consensus        73 TIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~-----------Gvl~QTrR-Hs~I~s--LLG  138 (431)
T COG2895          73 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK-----------GVLEQTRR-HSFIAS--LLG  138 (431)
T ss_pred             eEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch-----------hhHHHhHH-HHHHHH--HhC
Confidence            4445555666678999999999999887776666677899999999843           22222221 111222  122


Q ss_pred             CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecCchHH
Q psy3651         239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIK  313 (334)
Q Consensus       239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~~nI~  313 (334)
                      =..++|..||+||..-.                      ++..+=|+..|..+...-. +...+..+||..|.||-
T Consensus       139 IrhvvvAVNKmDLvdy~----------------------e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         139 IRHVVVAVNKMDLVDYS----------------------EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             CcEEEEEEeeecccccC----------------------HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            24689999999985531                      1222345566666544322 55678899999999985

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=96.18  E-value=0.0093  Score=62.79  Aligned_cols=92  Identities=17%  Similarity=0.222  Sum_probs=71.8

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeC-cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISN-IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL  221 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~-~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl  221 (334)
                      -||.|.+    +.|.-|+.....++.+++ ..++++||.|+-.|-.--..-.+-+|++|.|+|..+           --.
T Consensus        50 ~D~~e~E----qeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdave-----------GV~  114 (697)
T COG0480          50 MDWMEQE----QERGITITSAATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVE-----------GVE  114 (697)
T ss_pred             CCCcHHH----HhcCCEEeeeeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCC-----------Cee
Confidence            4566654    346666666677788885 999999999998876655556677899999999988           566


Q ss_pred             HHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       222 ~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      ..+-..|++...    .+.|.++|.||+|...
T Consensus       115 ~QTEtv~rqa~~----~~vp~i~fiNKmDR~~  142 (697)
T COG0480         115 PQTETVWRQADK----YGVPRILFVNKMDRLG  142 (697)
T ss_pred             ecHHHHHHHHhh----cCCCeEEEEECccccc
Confidence            677778888766    5789999999999755

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.97  E-value=0.066  Score=51.67  Aligned_cols=113  Identities=12%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             eeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         169 ISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       169 ~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ..+..+.|.||+|-+...   .....-+|.+++|.+...-          ..++...   ..++.      ..-++++||
T Consensus       146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~g----------d~iq~~k---~gi~E------~aDIiVVNK  203 (332)
T PRK09435        146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAG----------DELQGIK---KGIME------LADLIVINK  203 (332)
T ss_pred             ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCch----------HHHHHHH---hhhhh------hhheEEeeh
Confidence            357889999999988322   2246679999999763322          1222211   11222      123899999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      .|+....-      .              +.....+...+.-+... .....+++.+||+++.||.++++.+.+..
T Consensus       204 aDl~~~~~------a--------------~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        204 ADGDNKTA------A--------------RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             hcccchhH------H--------------HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            99865311      0              01111222222111111 11224688999999999999999998754

>KOG1532|consensus

Probab=95.96  E-value=0.014  Score=54.48  Aligned_cols=137  Identities=17%  Similarity=0.287  Sum_probs=71.2

Q ss_pred             cceeeeecCCcccccccccc-------cc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQ-------CF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~-------~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      ..+-++||.||-. ---|..       -+  ..-+.|+||+|......       ...+-..+-.-.+|+-   -.+.|+
T Consensus       116 ~~~~liDTPGQIE-~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~-------p~tFMSNMlYAcSily---ktklp~  184 (366)
T KOG1532|consen  116 FDYVLIDTPGQIE-AFTWSASGSIITETLASSFPTVVVYVVDTPRSTS-------PTTFMSNMLYACSILY---KTKLPF  184 (366)
T ss_pred             cCEEEEcCCCceE-EEEecCCccchHhhHhhcCCeEEEEEecCCcCCC-------chhHHHHHHHHHHHHH---hccCCe
Confidence            3455778888753 223432       12  13478999999876421       1223333333334432   356799


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHH-HHHHHHHHHHhhc--cC-CCCCeEEEEEeeecCchHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQA-VQTFLLNYFKAVK--RD-EKKPLFHHFTTAVDTENIKIVFNA  318 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~-~~~fi~~~F~~l~--~~-~~~~i~~~~tsA~d~~nI~~vf~~  318 (334)
                      |+++||+|+.....      ..+|..||..-....++ -..|+...-..+.  -. --+++...-+||.+|.|..+.|..
T Consensus       185 ivvfNK~Dv~d~~f------a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~a  258 (366)
T KOG1532|consen  185 IVVFNKTDVSDSEF------ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTA  258 (366)
T ss_pred             EEEEecccccccHH------HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHH
Confidence            99999999865433      22232222110000000 0012221111110  00 013456778999999999999999


Q ss_pred             HHHHHHH
Q psy3651         319 VKNTILH  325 (334)
Q Consensus       319 v~~~I~~  325 (334)
                      |...+-.
T Consensus       259 v~~~vdE  265 (366)
T KOG1532|consen  259 VDESVDE  265 (366)
T ss_pred             HHHHHHH
Confidence            9876654

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=95.95  E-value=0.016  Score=57.16  Aligned_cols=75  Identities=13%  Similarity=0.317  Sum_probs=60.5

Q ss_pred             eEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         163 TEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       163 ~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      +..+|++.+..+++.||.|++.+..-.-.-+--||++|.|+|.+.           .--...++||+ +|.   ++++||
T Consensus        72 SVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAK-----------GiE~qT~KLfe-Vcr---lR~iPI  136 (528)
T COG4108          72 SVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAK-----------GIEPQTLKLFE-VCR---LRDIPI  136 (528)
T ss_pred             eEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEeccc-----------CccHHHHHHHH-HHh---hcCCce
Confidence            367889999999999999999877655555668999999999987           34456677775 454   478999


Q ss_pred             EEEEeCCCcc
Q psy3651         243 ILFLNKTDLL  252 (334)
Q Consensus       243 iL~lNK~Dl~  252 (334)
                      +=|.||.|..
T Consensus       137 ~TFiNKlDR~  146 (528)
T COG4108         137 FTFINKLDRE  146 (528)
T ss_pred             EEEeeccccc
Confidence            9999999964

>PRK09602 translation-associated GTPase; Reviewed

Probab=95.94  E-value=0.048  Score=53.95  Aligned_cols=36  Identities=22%  Similarity=0.465  Sum_probs=26.4

Q ss_pred             cceeeeecCCcc----cccc---cccccccCCCeEEEEEeCCC
Q psy3651         172 IPFLFVDVGGQR----SQRR---KWFQCFDSVTSILFLVSSSE  207 (334)
Q Consensus       172 ~~~~i~DvgGq~----~~r~---kw~~~f~~v~~iIfv~dls~  207 (334)
                      ..+++||++|..    ..+.   +.....++++++++|+|.++
T Consensus        72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~  114 (396)
T PRK09602         72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG  114 (396)
T ss_pred             eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            678999999942    2233   33334789999999999983

>KOG0458|consensus

Probab=95.67  E-value=0.03  Score=56.91  Aligned_cols=137  Identities=13%  Similarity=0.112  Sum_probs=83.6

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      |.|.-|..+-...|+-....+.+.|..|++-|-.-.+.=-..+|+.|+|+|.+-- ..-.--...+...|-..+...+  
T Consensus       237 RerGvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~L--  313 (603)
T KOG0458|consen  237 RERGVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRSL--  313 (603)
T ss_pred             hhcceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHHc--
Confidence            4445555555677777788999999999988877666666678999999998841 1100001224555555555443  


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                          .-..+|+..||+|+-.=    ....+...          ......|+++.+    .-.+..+.+..+|+..|+|+.
T Consensus       314 ----gi~qlivaiNKmD~V~W----sq~RF~eI----------k~~l~~fL~~~~----gf~es~v~FIPiSGl~GeNL~  371 (603)
T KOG0458|consen  314 ----GISQLIVAINKMDLVSW----SQDRFEEI----------KNKLSSFLKESC----GFKESSVKFIPISGLSGENLI  371 (603)
T ss_pred             ----CcceEEEEeecccccCc----cHHHHHHH----------HHHHHHHHHHhc----CcccCCcceEecccccCCccc
Confidence                34679999999998541    11111110          111222443331    122356789999999999985


Q ss_pred             HH
Q psy3651         314 IV  315 (334)
Q Consensus       314 ~v  315 (334)
                      ..
T Consensus       372 k~  373 (603)
T KOG0458|consen  372 KI  373 (603)
T ss_pred             cc
Confidence            43

>PRK01889 GTPase RsgA; Reviewed

Probab=95.65  E-value=0.069  Score=52.04  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=51.3

Q ss_pred             cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCC
Q psy3651         192 CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE  271 (334)
Q Consensus       192 ~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~  271 (334)
                      .-.|+|.+++|+++...       .+..+++..+...+       -.+++.+|++||+||... .  .  .         
T Consensus       109 iaANvD~vliV~s~~p~-------~~~~~ldr~L~~a~-------~~~i~piIVLNK~DL~~~-~--~--~---------  160 (356)
T PRK01889        109 IAANVDTVFIVCSLNHD-------FNLRRIERYLALAW-------ESGAEPVIVLTKADLCED-A--E--E---------  160 (356)
T ss_pred             EEEeCCEEEEEEecCCC-------CChhHHHHHHHHHH-------HcCCCEEEEEEChhcCCC-H--H--H---------
Confidence            35799999999999521       11122333222221       256778999999999643 1  0  0         


Q ss_pred             CCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         272 GDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       272 g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                                 .+ +.+..+    ...+.++.+||+++.++..+..++.
T Consensus       161 -----------~~-~~~~~~----~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        161 -----------KI-AEVEAL----APGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             -----------HH-HHHHHh----CCCCcEEEEECCCCccHHHHHHHhh
Confidence                       00 011222    1235678899999999999888775

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=95.62  E-value=0.034  Score=52.42  Aligned_cols=88  Identities=17%  Similarity=0.232  Sum_probs=53.9

Q ss_pred             ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCC
Q psy3651         191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF  270 (334)
Q Consensus       191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y  270 (334)
                      ...+.+|.||+|+|..+...        .+-    ..+...+     .+.|+++++||+||.....      +..+    
T Consensus        20 ~~l~~aDvIL~VvDar~p~~--------~~~----~~l~~~~-----~~kp~iiVlNK~DL~~~~~------~~~~----   72 (287)
T PRK09563         20 ENLKLVDVVIEVLDARIPLS--------SEN----PMIDKII-----GNKPRLLILNKSDLADPEV------TKKW----   72 (287)
T ss_pred             HHhhhCCEEEEEEECCCCCC--------CCC----hhHHHHh-----CCCCEEEEEEchhcCCHHH------HHHH----
Confidence            34678999999999876411        111    1122222     2579999999999853210      1111    


Q ss_pred             CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         271 EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       271 ~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                                .+|+    ..      ....++.+||+++.+++.+.+.+...+-.
T Consensus        73 ----------~~~~----~~------~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         73 ----------IEYF----EE------QGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             ----------HHHH----HH------cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence                      1111    11      12346789999999999999888776543

>COG0218 Predicted GTPase [General function prediction only]

Probab=95.60  E-value=0.23  Score=44.27  Aligned_cols=127  Identities=15%  Similarity=0.251  Sum_probs=68.9

Q ss_pred             eeccee--EEEEEeeCcceeeeecCCc------cccccccc----cccc---CCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         158 ATKGIT--EFTIVISNIPFLFVDVGGQ------RSQRRKWF----QCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       158 ~T~Gi~--~~~~~~~~~~~~i~DvgGq------~~~r~kw~----~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      .|-|.+  ...|.+.+. +.+.|+.|=      ...+.+|.    +|++   +..+++.++|+-..-.-.  |      .
T Consensus        55 ktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~--D------~  125 (200)
T COG0218          55 KTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDL--D------R  125 (200)
T ss_pred             CCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHH--H------H
Confidence            444544  223444332 889999873      33456675    4554   467888888887651110  0      1


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEE
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHH  302 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~  302 (334)
                      +.++++.+       .+.|+++++||+|....      ....+              ....+++.   +.........+.
T Consensus       126 em~~~l~~-------~~i~~~vv~tK~DKi~~------~~~~k--------------~l~~v~~~---l~~~~~~~~~~~  175 (200)
T COG0218         126 EMIEFLLE-------LGIPVIVVLTKADKLKK------SERNK--------------QLNKVAEE---LKKPPPDDQWVV  175 (200)
T ss_pred             HHHHHHHH-------cCCCeEEEEEccccCCh------hHHHH--------------HHHHHHHH---hcCCCCccceEE
Confidence            33333322       56899999999995432      11110              01122222   111112121277


Q ss_pred             EEeeecCchHHHHHHHHHHHH
Q psy3651         303 FTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       303 ~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      .+|+..+.|++++-..|...+
T Consensus       176 ~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         176 LFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             EEecccccCHHHHHHHHHHHh
Confidence            788888899888877766554

>KOG1423|consensus

Probab=95.57  E-value=0.077  Score=50.33  Aligned_cols=134  Identities=17%  Similarity=0.246  Sum_probs=76.6

Q ss_pred             EeeCcceeeeecCCccccccccc------------ccccCCCeEEEEEeCCCccchhhcccccccHH-HHHHHHHHHHhh
Q psy3651         168 VISNIPFLFVDVGGQRSQRRKWF------------QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH-ESRNIFDTIINN  234 (334)
Q Consensus       168 ~~~~~~~~i~DvgGq~~~r~kw~------------~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~-esl~lf~~i~~~  234 (334)
                      +-+...+-++||.|--+......            +-...+|.|+.|+|.++--         +.++ ..+...+.    
T Consensus       116 ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr---------~~l~p~vl~~l~~----  182 (379)
T KOG1423|consen  116 TSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATR---------TPLHPRVLHMLEE----  182 (379)
T ss_pred             ecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCc---------CccChHHHHHHHH----
Confidence            33567889999999765332221            1235789999999999731         1111 11222222    


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC---CC-CCe----EEEEEee
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD---EK-KPL----FHHFTTA  306 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~---~~-~~i----~~~~tsA  306 (334)
                        ..+.|-+|++||.|...+|.  .--++.+.+.+  |.   .....-=+.++|......   +. -++    .+|++||
T Consensus       183 --ys~ips~lvmnkid~~k~k~--~Ll~l~~~Lt~--g~---l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSa  253 (379)
T KOG1423|consen  183 --YSKIPSILVMNKIDKLKQKR--LLLNLKDLLTN--GE---LAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSA  253 (379)
T ss_pred             --HhcCCceeeccchhcchhhh--HHhhhHHhccc--cc---cchhhhhHHHHhccCCcccccccccCcccceeEEEEec
Confidence              24578899999999887764  33334333211  11   111122334444433211   01 112    3788999


Q ss_pred             ecCchHHHHHHHHHHHH
Q psy3651         307 VDTENIKIVFNAVKNTI  323 (334)
Q Consensus       307 ~d~~nI~~vf~~v~~~I  323 (334)
                      +.|+||+++=+++..+.
T Consensus       254 L~G~GikdlkqyLmsqa  270 (379)
T KOG1423|consen  254 LYGEGIKDLKQYLMSQA  270 (379)
T ss_pred             ccccCHHHHHHHHHhcC
Confidence            99999999988887643

>TIGR00750 lao LAO/AO transport system ATPase

Probab=95.52  E-value=0.13  Score=48.79  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+..+-|.||.|-..   ........+|.++++.....-             .+.......+      .+.|.++++||+
T Consensus       125 ~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~-------------~el~~~~~~l------~~~~~ivv~NK~  182 (300)
T TIGR00750       125 AGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG-------------DDLQGIKAGL------MEIADIYVVNKA  182 (300)
T ss_pred             CCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc-------------HHHHHHHHHH------hhhccEEEEEcc
Confidence            468889999988542   122345667787777432221             1111111222      346779999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+....   ....+..                 .+......+... ......++.+||++++|+.++++++.+..
T Consensus       183 Dl~~~~---~~~~~~~-----------------~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       183 DGEGAT---NVTIARL-----------------MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             cccchh---HHHHHHH-----------------HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            986531   0000000                 000000111111 11223478999999999999999998863

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0705|consensus

Probab=95.45  E-value=0.037  Score=55.98  Aligned_cols=120  Identities=16%  Similarity=0.145  Sum_probs=80.0

Q ss_pred             EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      +..+..-+.+.|.||..     -..|-.-++++|||+.+-+.          +.++....++..+.....-...|+++++
T Consensus        72 v~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~----------~s~q~v~~l~~~l~~~r~r~~i~l~lvg  136 (749)
T KOG0705|consen   72 VDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDE----------QSFQAVQALAHEMSSYRNISDLPLILVG  136 (749)
T ss_pred             eeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccc----------cCHHHHHHHHhhcccccccccchHHhhc
Confidence            33456788899999833     23456789999999999997          7777777777777666555667888887


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      .+-=+ ..+.  ..+..             ...+.      ++.   ...+.+.+++|||+.|.|+..+|+.+...++..
T Consensus       137 tqd~i-S~~~--~rv~~-------------da~~r------~l~---~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  137 TQDHI-SAKR--PRVIT-------------DDRAR------QLS---AQMKRCSYYETCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             Ccchh-hccc--ccccc-------------hHHHH------HHH---HhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence            76433 2222  11111             11111      111   123567789999999999999999998876643

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.20  E-value=0.1  Score=51.66  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=82.9

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .|..|+-+....+...+..+.+.|+.|.+.+-+--..-..+.+.+++|++..+=        -....-|.+...+.    
T Consensus        33 KRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdl----  100 (447)
T COG3276          33 KRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDL----  100 (447)
T ss_pred             hcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHh----
Confidence            355566666777777788999999999987654444445578999999998652        01233344443332    


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                        +.....++++||+|+..+..  -..                     .+++--..+.   -....++.+||+.+++|.+
T Consensus       101 --lgi~~giivltk~D~~d~~r--~e~---------------------~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~  152 (447)
T COG3276         101 --LGIKNGIIVLTKADRVDEAR--IEQ---------------------KIKQILADLS---LANAKIFKTSAKTGRGIEE  152 (447)
T ss_pred             --cCCCceEEEEeccccccHHH--HHH---------------------HHHHHHhhcc---cccccccccccccCCCHHH
Confidence              34456799999999875421  010                     1111101111   1234568899999999999


Q ss_pred             HHHHHHHHH
Q psy3651         315 VFNAVKNTI  323 (334)
Q Consensus       315 vf~~v~~~I  323 (334)
                      +=+.+.+..
T Consensus       153 Lk~~l~~L~  161 (447)
T COG3276         153 LKNELIDLL  161 (447)
T ss_pred             HHHHHHHhh
Confidence            988888876

>KOG3887|consensus

Probab=94.85  E-value=0.6  Score=43.08  Aligned_cols=124  Identities=19%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             cceeeeecCCccccccc---ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh--cCCCCCcEEEEE
Q psy3651         172 IPFLFVDVGGQRSQRRK---WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN--VIFRNVSFILFL  246 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~k---w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~--~~~~~~piiL~l  246 (334)
                      +.+++||.+||-.+-.-   ....|+++-|.|||+|.-+            ...+++.-+...+..  ..-+++.+=+|.
T Consensus        75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd------------dy~eala~L~~~v~raykvNp~in~EVfi  142 (347)
T KOG3887|consen   75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD------------DYMEALARLHMTVERAYKVNPNINFEVFI  142 (347)
T ss_pred             cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechH------------HHHHHHHHHHHHhhheeecCCCceEEEEE
Confidence            57899999999875332   2345899999999999876            345566555554443  234567888999


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      .|.|-+.+-.  +...-.+          -.+.+.+-+...  .+   .+-.+.+|.||-.|. .|-+.|..|...++.
T Consensus       143 HKvDGLsdd~--kietqrd----------I~qr~~d~l~d~--gl---e~v~vsf~LTSIyDH-SIfEAFSkvVQkLip  203 (347)
T KOG3887|consen  143 HKVDGLSDDF--KIETQRD----------IHQRTNDELADA--GL---EKVQVSFYLTSIYDH-SIFEAFSKVVQKLIP  203 (347)
T ss_pred             EeccCCchhh--hhhhHHH----------HHHHhhHHHHhh--hh---ccceEEEEEeeecch-HHHHHHHHHHHHHhh
Confidence            9999766422  1100000          011111111111  11   124577888998886 677778777765553

>cd01882 BMS1 Bms1

Probab=94.79  E-value=0.22  Score=45.25  Aligned_cols=66  Identities=12%  Similarity=0.134  Sum_probs=41.0

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc-EEEEEeC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS-FILFLNK  248 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p-iiL~lNK  248 (334)
                      ++.++.++|++|.-  ... ....+.++.++||+|.+.-.           ......++..+..    .+.| +++++||
T Consensus        81 ~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~-----------~~~~~~i~~~l~~----~g~p~vi~VvnK  142 (225)
T cd01882          81 KKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGF-----------EMETFEFLNILQV----HGFPRVMGVLTH  142 (225)
T ss_pred             CCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCC-----------CHHHHHHHHHHHH----cCCCeEEEEEec
Confidence            56788999999864  222 22347899999999987631           1112233333222    2356 5569999


Q ss_pred             CCcch
Q psy3651         249 TDLLA  253 (334)
Q Consensus       249 ~Dl~~  253 (334)
                      .|+..
T Consensus       143 ~D~~~  147 (225)
T cd01882         143 LDLFK  147 (225)
T ss_pred             cccCC
Confidence            99863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=94.39  E-value=0.27  Score=47.09  Aligned_cols=48  Identities=15%  Similarity=0.150  Sum_probs=36.4

Q ss_pred             eeEEEEEeeCcceeeeecCC----ccccc---ccccccccCCCeEEEEEeCCCcc
Q psy3651         162 ITEFTIVISNIPFLFVDVGG----QRSQR---RKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       162 i~~~~~~~~~~~~~i~DvgG----q~~~r---~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      ....-+.+++..+|+.|+.|    +.+-|   +.-...-++||.||+|+|+....
T Consensus       100 ~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~  154 (365)
T COG1163         100 PVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP  154 (365)
T ss_pred             cccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence            33445677899999999984    44444   45667789999999999999654

>KOG0468|consensus

Probab=94.13  E-value=0.093  Score=54.35  Aligned_cols=69  Identities=14%  Similarity=0.242  Sum_probs=55.6

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ..-+++.||.|+-.+-.-...-++-+|+++.|+|..+           .-|-..-.+.+..++    .+.|+++++||.|
T Consensus       196 S~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~E-----------GVmlntEr~ikhaiq----~~~~i~vviNKiD  260 (971)
T KOG0468|consen  196 SYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAE-----------GVMLNTERIIKHAIQ----NRLPIVVVINKVD  260 (971)
T ss_pred             eeeeeeecCCCcccchHHHHHHhhhcceEEEEEEccc-----------CceeeHHHHHHHHHh----ccCcEEEEEehhH
Confidence            4778999999999988777777888999999999998           455555556666665    4579999999999


Q ss_pred             cchh
Q psy3651         251 LLAE  254 (334)
Q Consensus       251 l~~e  254 (334)
                      .+..
T Consensus       261 RLil  264 (971)
T KOG0468|consen  261 RLIL  264 (971)
T ss_pred             HHHH
Confidence            7654

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=94.11  E-value=0.15  Score=48.76  Aligned_cols=114  Identities=17%  Similarity=0.226  Sum_probs=75.4

Q ss_pred             cceeeeecCCcccccccccccccCC---CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSV---TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v---~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ..+.+.|..|++-.   -....+++   |++|+|++.++...       .....|-+..++= +     .-..+|++-||
T Consensus        86 R~VSfVDaPGHe~L---MATMLsGAAlMDgAlLvIaANEpcP-------QPQT~EHl~AleI-i-----gik~iiIvQNK  149 (415)
T COG5257          86 RRVSFVDAPGHETL---MATMLSGAALMDGALLVIAANEPCP-------QPQTREHLMALEI-I-----GIKNIIIVQNK  149 (415)
T ss_pred             EEEEEeeCCchHHH---HHHHhcchhhhcceEEEEecCCCCC-------CCchHHHHHHHhh-h-----ccceEEEEecc
Confidence            35779999999853   44556664   89999999988621       1333444433322 2     22468999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +||..+.     .-++.           +++.++|++...       ..+.++..+||..+.||+.+++.+.+.|-
T Consensus       150 IDlV~~E-----~AlE~-----------y~qIk~FvkGt~-------Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip  202 (415)
T COG5257         150 IDLVSRE-----RALEN-----------YEQIKEFVKGTV-------AENAPIIPISAQHKANIDALIEAIEKYIP  202 (415)
T ss_pred             cceecHH-----HHHHH-----------HHHHHHHhcccc-------cCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence            9996532     11222           345555555431       13456889999999999999999988774

>COG1162 Predicted GTPases [General function prediction only]

Probab=93.61  E-value=0.3  Score=46.37  Aligned_cols=87  Identities=18%  Similarity=0.189  Sum_probs=56.0

Q ss_pred             cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCC
Q psy3651         194 DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGD  273 (334)
Q Consensus       194 ~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~  273 (334)
                      .+++-+|+|+++.+.+      .+.+.++..+-..+.       .++.-+|++||+||..+--  ...  .+        
T Consensus        78 ~n~d~~iiIvs~~~P~------~~~~~ldR~Lv~ae~-------~gi~pvIvlnK~DL~~~~~--~~~--~~--------  132 (301)
T COG1162          78 ANNDQAIIVVSLVDPD------FNTNLLDRYLVLAEA-------GGIEPVIVLNKIDLLDDEE--AAV--KE--------  132 (301)
T ss_pred             cccceEEEEEeccCCC------CCHHHHHHHHHHHHH-------cCCcEEEEEEccccCcchH--HHH--HH--------
Confidence            3477888888888863      334556655554433       5676777899999976421  000  01        


Q ss_pred             CccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         274 PQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       274 ~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                                .    +....  .-.+..+++||+++.++.++...+..
T Consensus       133 ----------~----~~~y~--~~gy~v~~~s~~~~~~~~~l~~~l~~  164 (301)
T COG1162         133 ----------L----LREYE--DIGYPVLFVSAKNGDGLEELAELLAG  164 (301)
T ss_pred             ----------H----HHHHH--hCCeeEEEecCcCcccHHHHHHHhcC
Confidence                      0    11111  24677899999999999998887765

>KOG0464|consensus

Probab=93.55  E-value=0.019  Score=56.30  Aligned_cols=85  Identities=15%  Similarity=0.151  Sum_probs=64.9

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      |.|.-|+.-....|+++|.++.++||.|+-.+|---..|.+-.|+++-|+|.|.=           --...+..|.+.-.
T Consensus        84 rergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasag-----------ve~qtltvwrqadk  152 (753)
T KOG0464|consen   84 RERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAG-----------VEAQTLTVWRQADK  152 (753)
T ss_pred             HhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCC-----------cccceeeeehhccc
Confidence            4455555555678889999999999999999998888999999999999999873           22344555555422


Q ss_pred             hcCCCCCcEEEEEeCCCcch
Q psy3651         234 NVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~  253 (334)
                          -++|-+.|+||+|...
T Consensus       153 ----~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  153 ----FKIPAHCFINKMDKLA  168 (753)
T ss_pred             ----cCCchhhhhhhhhhhh
Confidence                3578888999999643

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=93.52  E-value=0.38  Score=43.14  Aligned_cols=84  Identities=14%  Similarity=0.282  Sum_probs=52.2

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccccc-------ccccc----cccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQR-------RKWFQ----CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r-------~kw~~----~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      |.........+.+..+.++||+|--.-+       +....    +-.+.+++|||+.+..+.         +.-...+++
T Consensus        36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t---------~~~~~~l~~  106 (212)
T PF04548_consen   36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFT---------EEDREVLEL  106 (212)
T ss_dssp             -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-S---------HHHHHHHHH
T ss_pred             ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcch---------HHHHHHHHH
Confidence            4455555667788999999999843211       11222    345899999999999662         345567777


Q ss_pred             HHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         228 FDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       228 f~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      +.+++......  .++|+++..|-+.
T Consensus       107 l~~~FG~~~~k--~~ivvfT~~d~~~  130 (212)
T PF04548_consen  107 LQEIFGEEIWK--HTIVVFTHADELE  130 (212)
T ss_dssp             HHHHHCGGGGG--GEEEEEEEGGGGT
T ss_pred             HHHHccHHHHh--HhhHHhhhccccc
Confidence            88877765443  5788888877544

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=92.36  E-value=0.71  Score=44.15  Aligned_cols=75  Identities=11%  Similarity=0.191  Sum_probs=43.9

Q ss_pred             EeeCcceeeeecCCccccccc---c---cccc---cCCCeEEEEEeCCCccchhhcccccccH-HHHHHHHHHHHhhcCC
Q psy3651         168 VISNIPFLFVDVGGQRSQRRK---W---FQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRL-HESRNIFDTIINNVIF  237 (334)
Q Consensus       168 ~~~~~~~~i~DvgGq~~~r~k---w---~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl-~esl~lf~~i~~~~~~  237 (334)
                      ...+.++.++||+|.......   .   ..+|   .+.++||||..+.... .       ... ...++.+.+++.....
T Consensus        82 ~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~-------~~~DkqlLk~Iqe~FG~~iw  153 (313)
T TIGR00991        82 TRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-V-------DTLDGQVIRAITDSFGKDIW  153 (313)
T ss_pred             EECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-C-------CHHHHHHHHHHHHHhhhhhh
Confidence            347889999999998753211   1   1111   2689999997766530 0       111 2234444444432211


Q ss_pred             CCCcEEEEEeCCCcc
Q psy3651         238 RNVSFILFLNKTDLL  252 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~  252 (334)
                        .++||++++.|..
T Consensus       154 --~~~IVVfTh~d~~  166 (313)
T TIGR00991       154 --RKSLVVLTHAQFS  166 (313)
T ss_pred             --ccEEEEEECCccC
Confidence              3689999999964

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=92.20  E-value=0.28  Score=41.51  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=43.0

Q ss_pred             CcceeeeecCCccc----ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         171 NIPFLFVDVGGQRS----QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       171 ~~~~~i~DvgGq~~----~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      ...+.++|+.|-..    ....|..|...++++|||++.+..          -.-.+ ...+.+....   ....+++|+
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~----------~~~~~-~~~l~~~~~~---~~~~~i~V~  165 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD----------LTESD-MEFLKQMLDP---DKSRTIFVL  165 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST----------GGGHH-HHHHHHHHTT---TCSSEEEEE
T ss_pred             ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc----------cchHH-HHHHHHHhcC---CCCeEEEEE
Confidence            35688999998854    336688899999999999998874          11122 3333333332   333489999


Q ss_pred             eCC
Q psy3651         247 NKT  249 (334)
Q Consensus       247 NK~  249 (334)
                      ||.
T Consensus       166 nk~  168 (168)
T PF00350_consen  166 NKA  168 (168)
T ss_dssp             E-G
T ss_pred             cCC
Confidence            984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=91.83  E-value=0.18  Score=47.61  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=56.8

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.|--|+......++..+..+-..|+.|+..+-+..+.--...|+.|+|++.+|=-.        ....|-+.+-.+   
T Consensus        57 k~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm--------PqTrEHiLlarq---  125 (394)
T COG0050          57 KARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM--------PQTREHILLARQ---  125 (394)
T ss_pred             hhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC--------Ccchhhhhhhhh---
Confidence            445556655556666678899999999999876655555556799999999998311        122232222221   


Q ss_pred             hcCCCCC-cEEEEEeCCCcch
Q psy3651         234 NVIFRNV-SFILFLNKTDLLA  253 (334)
Q Consensus       234 ~~~~~~~-piiL~lNK~Dl~~  253 (334)
                          -.. -+++|+||+|+..
T Consensus       126 ----vGvp~ivvflnK~Dmvd  142 (394)
T COG0050         126 ----VGVPYIVVFLNKVDMVD  142 (394)
T ss_pred             ----cCCcEEEEEEecccccC
Confidence                234 5889999999975

>smart00053 DYNc Dynamin, GTPase

Probab=91.27  E-value=0.81  Score=42.15  Aligned_cols=69  Identities=14%  Similarity=0.123  Sum_probs=43.6

Q ss_pred             cceeeeecCCcccc-------------cccccccccC-CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         172 IPFLFVDVGGQRSQ-------------RRKWFQCFDS-VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       172 ~~~~i~DvgGq~~~-------------r~kw~~~f~~-v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ..+.++|++|-...             +.+-..|.++ .+.|++|+|...-          -.-.+++.+.+.+-    .
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d----------~~~~d~l~ia~~ld----~  190 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVD----------LANSDALKLAKEVD----P  190 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCC----------CCchhHHHHHHHHH----H
Confidence            68999999998521             1233456774 4588899987541          11123344444432    2


Q ss_pred             CCCcEEEEEeCCCcchh
Q psy3651         238 RNVSFILFLNKTDLLAE  254 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~e  254 (334)
                      .+.++++|+||.|...+
T Consensus       191 ~~~rti~ViTK~D~~~~  207 (240)
T smart00053      191 QGERTIGVITKLDLMDE  207 (240)
T ss_pred             cCCcEEEEEECCCCCCc
Confidence            46799999999998653

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0461|consensus

Probab=91.26  E-value=0.91  Score=43.96  Aligned_cols=122  Identities=17%  Similarity=0.202  Sum_probs=71.9

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.++|..|+.+--+-.+---.-.|..+.|+|+..=-|        ....|.+-+=+-.|.       ..+++.||+|+
T Consensus        70 lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~Q--------tQtAEcLiig~~~c~-------klvvvinkid~  134 (522)
T KOG0461|consen   70 LQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQ--------TQTAECLIIGELLCK-------KLVVVINKIDV  134 (522)
T ss_pred             ceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccc--------cccchhhhhhhhhcc-------ceEEEEecccc
Confidence            667999999998754333322233477889999886422        344555554444443       36788899998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC----chHHHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT----ENIKIVFNAVKNTILHR  326 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~----~nI~~vf~~v~~~I~~~  326 (334)
                      ..|--  ..+.+.+.              ..-+++..++.  .-+.+.++..+||.+|    +.|.++-+.+...|.+-
T Consensus       135 lpE~q--r~ski~k~--------------~kk~~KtLe~t--~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P  195 (522)
T KOG0461|consen  135 LPENQ--RASKIEKS--------------AKKVRKTLEST--GFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP  195 (522)
T ss_pred             ccchh--hhhHHHHH--------------HHHHHHHHHhc--CcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence            76522  22333321              11111111111  1124577899999999    77888777777776643

>COG3596 Predicted GTPase [General function prediction only]

Probab=90.89  E-value=1.1  Score=42.12  Aligned_cols=131  Identities=11%  Similarity=0.126  Sum_probs=82.8

Q ss_pred             eCcceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         170 SNIPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      ++..+.+||+.|-..       .|.+...+....|.|+.+.+..|.+-           .-...++..++-.-  -+.++
T Consensus        85 ~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-----------~~d~~f~~dVi~~~--~~~~~  151 (296)
T COG3596          85 DGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-----------GTDEDFLRDVIILG--LDKRV  151 (296)
T ss_pred             cccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-----------cCCHHHHHHHHHhc--cCcee
Confidence            457899999998776       55667778888999999999999643           33345566665431  23789


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +++.|..|....        ...|  ++.|.. ...+.+.|+.++-..+.+.-..--++.+.++...-|++.+...+...
T Consensus       152 i~~VtQ~D~a~p--------~~~W--~~~~~~-p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~  220 (296)
T COG3596         152 LFVVTQADRAEP--------GREW--DSAGHQ-PSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITA  220 (296)
T ss_pred             EEEEehhhhhcc--------cccc--ccccCC-CCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHh
Confidence            999999995431        1111  333332 22344567777755554321111123344457788999988888776


Q ss_pred             HH
Q psy3651         323 IL  324 (334)
Q Consensus       323 I~  324 (334)
                      +-
T Consensus       221 lp  222 (296)
T COG3596         221 LP  222 (296)
T ss_pred             Cc
Confidence            54

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=89.92  E-value=0.35  Score=45.76  Aligned_cols=24  Identities=13%  Similarity=0.098  Sum_probs=21.5

Q ss_pred             CeEEEEEeeecCchHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      ...++.+||++++|++.+.+|+.+
T Consensus       263 ~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        263 EIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            366899999999999999999976

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=89.81  E-value=0.94  Score=35.78  Aligned_cols=53  Identities=8%  Similarity=0.005  Sum_probs=35.4

Q ss_pred             cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         188 KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       188 kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      ....+++++++++.|++.++.          +++...  |...+... .-.+.|+++++||.|+..
T Consensus        39 ~~~~~~~s~~~~~~v~~~~~~----------~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~   91 (124)
T smart00010       39 YDPTSYESFDVVLQCWRVDDR----------DSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE   91 (124)
T ss_pred             ccccccCCCCEEEEEEEccCH----------HHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence            345677889999999999886          444322  44333322 224578999999999844

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0467|consensus

Probab=89.48  E-value=0.51  Score=49.75  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=53.7

Q ss_pred             EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      ...++..+.++|..|+-.+..--..--+=+|+.+..+|.-+           .--.....+.++.    |..+...+|++
T Consensus        67 ~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvve-----------gv~~qt~~vlrq~----~~~~~~~~lvi  131 (887)
T KOG0467|consen   67 LLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVE-----------GVCSQTYAVLRQA----WIEGLKPILVI  131 (887)
T ss_pred             cccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeecc-----------ccchhHHHHHHHH----HHccCceEEEE
Confidence            34478899999999999887766666666889999999887           2333344445444    44566789999


Q ss_pred             eCCCcchhhh
Q psy3651         247 NKTDLLAEKL  256 (334)
Q Consensus       247 NK~Dl~~eki  256 (334)
                      ||+|.+.-++
T Consensus       132 nkidrl~~el  141 (887)
T KOG0467|consen  132 NKIDRLITEL  141 (887)
T ss_pred             ehhhhHHHHH
Confidence            9999655444

>KOG0459|consensus

Probab=89.39  E-value=1  Score=44.46  Aligned_cols=138  Identities=17%  Similarity=0.134  Sum_probs=83.4

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCC--CccchhhcccccccHHHHHHHHHHH
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSS--EYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls--~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      |-..+|+++....|+....++.+.|..|+.++-.-.+.=-..+|..+.|+++-  +|. .-+|-  .-.-.|-..+-   
T Consensus       139 R~kgKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefe-tgFer--GgQTREha~La---  212 (501)
T KOG0459|consen  139 RDKGKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE-TGFEK--GGQTREHAMLA---  212 (501)
T ss_pred             hhccceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhh-ccccc--ccchhHHHHHH---
Confidence            45568999999999999999999999999998877666667778888887762  221 00111  11112222222   


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                         ....-...|++.||+|-..-.=  +.....+          -.+....|++  ++..+  ......+..+|...|.+
T Consensus       213 ---kt~gv~~lVv~vNKMddPtvnW--s~eRy~E----------~~~k~~~fLr--~~g~n--~~~d~~f~p~sg~tG~~  273 (501)
T KOG0459|consen  213 ---KTAGVKHLIVLINKMDDPTVNW--SNERYEE----------CKEKLQPFLR--KLGFN--PKPDKHFVPVSGLTGAN  273 (501)
T ss_pred             ---HhhccceEEEEEEeccCCccCc--chhhHHH----------HHHHHHHHHH--Hhccc--CCCCceeeecccccccc
Confidence               2224457899999999644211  1111111          1233344555  23333  23556778899999999


Q ss_pred             HHHHH
Q psy3651         312 IKIVF  316 (334)
Q Consensus       312 I~~vf  316 (334)
                      +++--
T Consensus       274 ~k~~~  278 (501)
T KOG0459|consen  274 VKDRT  278 (501)
T ss_pred             hhhcc
Confidence            87643

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=89.00  E-value=0.41  Score=42.60  Aligned_cols=25  Identities=12%  Similarity=0.022  Sum_probs=21.7

Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ...+++||+++|++++++++|+...
T Consensus       175 ~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         175 EAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             CCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            3568999999999999999998764

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=88.74  E-value=1.6  Score=40.42  Aligned_cols=83  Identities=10%  Similarity=0.108  Sum_probs=47.5

Q ss_pred             ceeEEEEEeeCcceeeeecCCccccc--ccc--------ccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         161 GITEFTIVISNIPFLFVDVGGQRSQR--RKW--------FQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       161 Gi~~~~~~~~~~~~~i~DvgGq~~~r--~kw--------~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      .........++.++.+|||+|-....  ..+        ..|..  ..++|+||..++.....       ..-...++.+
T Consensus        68 ~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~-------~~d~~llk~I  140 (249)
T cd01853          68 RVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRD-------YLDLPLLRAI  140 (249)
T ss_pred             EEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCC-------HHHHHHHHHH
Confidence            33444455678899999999976441  111        12333  57889999877653100       1111344444


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      .+.+.....  .++++++||+|..
T Consensus       141 ~e~fG~~i~--~~~ivV~T~~d~~  162 (249)
T cd01853         141 TDSFGPSIW--RNAIVVLTHAASS  162 (249)
T ss_pred             HHHhChhhH--hCEEEEEeCCccC
Confidence            444432222  3599999999964

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0465|consensus

Probab=88.52  E-value=1  Score=46.57  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      |.-|+-.-...+..++.++.++||.|+-.+----..-.+-.|+.|.|++...           .-...+...|.+...  
T Consensus        88 rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~-----------GVqsQt~tV~rQ~~r--  154 (721)
T KOG0465|consen   88 RGITIQSAATYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVA-----------GVESQTETVWRQMKR--  154 (721)
T ss_pred             cCceeeeceeeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEccc-----------ceehhhHHHHHHHHh--
Confidence            4444444456777789999999999998653222233455677777776665           334466677777765  


Q ss_pred             CCCCCcEEEEEeCCCcch
Q psy3651         236 IFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~  253 (334)
                        .+.|.|.|.||+|...
T Consensus       155 --y~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  155 --YNVPRICFINKMDRMG  170 (721)
T ss_pred             --cCCCeEEEEehhhhcC
Confidence              4789999999999654

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=88.20  E-value=6.3  Score=38.92  Aligned_cols=67  Identities=19%  Similarity=0.191  Sum_probs=43.3

Q ss_pred             cceeeeecCCcccccccccc--cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQ--CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~--~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .-+.+.|++|++..-+-.+.  .=..+|..++++...+=-+        .--.|-+-+.   +    -...|+|++.+|+
T Consensus       201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--------~~tkEHLgi~---~----a~~lPviVvvTK~  265 (527)
T COG5258         201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--------KMTKEHLGIA---L----AMELPVIVVVTKI  265 (527)
T ss_pred             cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--------hhhhHhhhhh---h----hhcCCEEEEEEec
Confidence            45789999999975443333  2257899999998877311        1112222221   1    1467999999999


Q ss_pred             Ccch
Q psy3651         250 DLLA  253 (334)
Q Consensus       250 Dl~~  253 (334)
                      |+..
T Consensus       266 D~~~  269 (527)
T COG5258         266 DMVP  269 (527)
T ss_pred             ccCc
Confidence            9854

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=87.45  E-value=0.69  Score=40.26  Aligned_cols=44  Identities=23%  Similarity=0.187  Sum_probs=26.3

Q ss_pred             CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         197 TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       197 ~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      |+|++|+|..+.-        ..+-.+-.+.+.  +.   ..+.|+|+++||+|+..
T Consensus         1 DvVl~VvDar~p~--------~~~~~~i~~~~~--l~---~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPL--------GCRCPQVEEAVL--QA---GGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCC--------CCCCHHHHHHHH--hc---cCCCCEEEEEehhhcCC
Confidence            6899999987741        011111111111  11   24579999999999964

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=86.84  E-value=1.5  Score=36.47  Aligned_cols=98  Identities=16%  Similarity=0.321  Sum_probs=63.4

Q ss_pred             eeecCCccccccccccc----ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         176 FVDVGGQRSQRRKWFQC----FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       176 i~DvgGq~~~r~kw~~~----f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      .+|+.|---+.+.|-|-    ..+++.+++|-+..+.-+.         |.-.   |    ..  ....|+|=+.+|.||
T Consensus        41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~---------f~p~---f----~~--~~~k~vIgvVTK~DL  102 (148)
T COG4917          41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESR---------FPPG---F----LD--IGVKKVIGVVTKADL  102 (148)
T ss_pred             ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcccc---------CCcc---c----cc--ccccceEEEEecccc
Confidence            56999988778888553    3689999999998886221         1100   0    11  123468999999999


Q ss_pred             chh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         252 LAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       252 ~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      .+. .|     .                .++.++++       ..  .-.+|.+||.|.++|+++++.+..
T Consensus       103 aed~dI-----~----------------~~~~~L~e-------aG--a~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         103 AEDADI-----S----------------LVKRWLRE-------AG--AEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             cchHhH-----H----------------HHHHHHHH-------cC--CcceEEEeccCcccHHHHHHHHHh
Confidence            842 22     1                12222221       11  234789999999999999987754

>KOG3905|consensus

Probab=86.27  E-value=2.2  Score=41.11  Aligned_cols=69  Identities=10%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHH
Q psy3651         239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNA  318 (334)
Q Consensus       239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~  318 (334)
                      ++|+++|.+|+|...--.  +..+.+             ++-.+||....+...-  ......++||++.+.||+.+...
T Consensus       222 Gi~vlVV~TK~D~~s~le--ke~eyr-------------Dehfdfiq~~lRkFCL--r~GaaLiyTSvKE~KNidllyKY  284 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLE--KEHEYR-------------DEHFDFIQSHLRKFCL--RYGAALIYTSVKETKNIDLLYKY  284 (473)
T ss_pred             CCcEEEEEeccchhhHhh--hcchhh-------------HHHHHHHHHHHHHHHH--HcCceeEEeecccccchHHHHHH
Confidence            479999999999743211  121221             1222455554433321  24456899999999999999998


Q ss_pred             HHHHHH
Q psy3651         319 VKNTIL  324 (334)
Q Consensus       319 v~~~I~  324 (334)
                      |...+.
T Consensus       285 ivhr~y  290 (473)
T KOG3905|consen  285 IVHRSY  290 (473)
T ss_pred             HHHHhc
Confidence            887665

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=83.47  E-value=1.5  Score=40.78  Aligned_cols=103  Identities=15%  Similarity=0.225  Sum_probs=54.6

Q ss_pred             CcceeeeecC--CcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         171 NIPFLFVDVG--GQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       171 ~~~~~i~Dvg--Gq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ++.+-|..|-  ||...     ..-+-||.+++|....-=|+.       .-+..-      ++.      ++=|+|.||
T Consensus       121 G~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~i-------Q~~KaG------imE------iaDi~vVNK  176 (266)
T PF03308_consen  121 GFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEI-------QAIKAG------IME------IADIFVVNK  176 (266)
T ss_dssp             T-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCC-------CTB-TT------HHH------H-SEEEEE-
T ss_pred             CCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHH-------HHHhhh------hhh------hccEEEEeC
Confidence            4667777764  55432     234567888888765543321       111111      111      123789999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC--CCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE--KKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~--~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      .|+...+-  ...++..                     . +.+....  ....++..|||+.+.+|.++++.|.+
T Consensus       177 aD~~gA~~--~~~~l~~---------------------~-l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  177 ADRPGADR--TVRDLRS---------------------M-LHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             -SHHHHHH--HHHHHHH---------------------H-HHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             CChHHHHH--HHHHHHH---------------------H-HhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            99655432  2222221                     1 3332221  23457899999999999999998876

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1424|consensus

Probab=80.98  E-value=1.6  Score=44.28  Aligned_cols=56  Identities=21%  Similarity=0.323  Sum_probs=39.0

Q ss_pred             cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhh
Q psy3651         186 RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEK  255 (334)
Q Consensus       186 r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~ek  255 (334)
                      |.+|.- .+-+|.||-+||.-+.           .+.-+-.+...+.+.  ......+|+.||.||....
T Consensus       166 RQLWRV-lErSDivvqIVDARnP-----------llfr~~dLe~Yvke~--d~~K~~~LLvNKaDLl~~~  221 (562)
T KOG1424|consen  166 RQLWRV-LERSDIVVQIVDARNP-----------LLFRSPDLEDYVKEV--DPSKANVLLVNKADLLPPE  221 (562)
T ss_pred             HHHHHH-HhhcceEEEEeecCCc-----------cccCChhHHHHHhcc--ccccceEEEEehhhcCCHH
Confidence            566763 4778999999999884           444444444444332  3446789999999998764

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=80.89  E-value=6  Score=33.90  Aligned_cols=66  Identities=12%  Similarity=0.171  Sum_probs=43.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +...+.++|++|.-...  -...+..+|.+|.++..+..           .+.....+++.+-.    .+.|+.+++||.
T Consensus        91 ~~~d~viiDtpp~~~~~--~~~~l~~aD~vliv~~~~~~-----------~~~~~~~~~~~l~~----~~~~~~vV~N~~  153 (179)
T cd03110          91 EGAELIIIDGPPGIGCP--VIASLTGADAALLVTEPTPS-----------GLHDLERAVELVRH----FGIPVGVVINKY  153 (179)
T ss_pred             cCCCEEEEECcCCCcHH--HHHHHHcCCEEEEEecCCcc-----------cHHHHHHHHHHHHH----cCCCEEEEEeCC
Confidence            35678899999765432  23456889999999988863           34444444433322    245788999999


Q ss_pred             Ccc
Q psy3651         250 DLL  252 (334)
Q Consensus       250 Dl~  252 (334)
                      |..
T Consensus       154 ~~~  156 (179)
T cd03110         154 DLN  156 (179)
T ss_pred             CCC
Confidence            964

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
1zca_A	359	Crystal Structure Of G Alpha 12 In Complex With Gdp		1e-92
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		2e-89
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		4e-89
3cx6_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		3e-88
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		9e-68
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		1e-62
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		1e-62
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		1e-62
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		2e-62
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		1e-58
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		2e-50
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		9e-50
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		9e-50
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		9e-50
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		1e-49
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		1e-49
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		1e-49
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		1e-49
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		1e-49
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		1e-49
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		1e-49
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		1e-49
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		2e-49
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		3e-49
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		3e-49
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		4e-49
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-49
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		5e-49
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		7e-49
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		8e-49
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		8e-49
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		8e-49
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-49
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-49
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-49
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-48
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		1e-48
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		2e-48
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		3e-48
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		7e-48
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		1e-47
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		2e-47
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-47
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		5e-47
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		5e-46
4fid_A	340	Crystal Structure Of A Heterotrimeric G-Protein Sub		5e-34
2xtz_A	354	Crystal Structure Of The G Alpha Protein Atgpa1 Fro		2e-33
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-05
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		4e-05
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		4e-05
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		5e-05
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		1e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		1e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		2e-04
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		3e-04
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		3e-04
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		3e-04
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		3e-04
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		4e-04
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		5e-04
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		5e-04
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		7e-04
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		8e-04

>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+ And Alf4- Length = 359

Iteration: 1
 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 210/293 (71%), Gaps = 17/293 (5%)
Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
           G +VL+DAR KL      GIPWQ+  N  H   +  F+N     ++   F  YV  L +L
Sbjct: 82  GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 135
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W D  IR+AF RRSE+QLG+S++YF DN DRI +        +Y PS +DIL ARKATKG
Sbjct: 136 WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-------LNYFPSKQDILLARKATKG 188
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E   VI  IPF  VDVGGQRSQR+KWFQCFD +TSILF+VSSSEYDQ L+EDRRTNRL
Sbjct: 189 IVEHDFVIKKIPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRL 248
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES NIF+TI+NN +F NVS ILFLNK DLL EK+++   SI +HFP+F+GDP  ++ VQ
Sbjct: 249 VESMNIFETIVNNKLFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFKGDPHRLEDVQ 306
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
            +L+  F   +R+  KPLFHHFTTA+DTENI+ VF+AVK+TIL  NL+D+MLQ
Sbjct: 307 RYLVQCFDRKRRNRSKPLFHHFTTAIDTENIRFVFHAVKDTILQENLKDIMLQ 359

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score =  325 bits (833), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/298 (53%), Positives = 218/298 (73%), Gaps = 22/298 (7%)
Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
           GM+VL+DAR KL       IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct: 80  GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 133
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +++LW+D  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct: 134 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 186
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            TKGI E+   I N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++    SI ++F EFEGDP  +
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 304
Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           + VQ FL+  F+  +RD +++PL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct: 305 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 362

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score =  324 bits (831), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 160/298 (53%), Positives = 218/298 (73%), Gaps = 22/298 (7%)
Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
           GM+VL+DAR KL       IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct: 56  GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 109
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +++LW+D  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct: 110 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 162
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            TKGI E+   I N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++    SI ++F EFEGDP  +
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 280
Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           + VQ FL+  F+  +RD +++PL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct: 281 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 338

>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338

Iteration: 1
 Score =  321 bits (823), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 159/298 (53%), Positives = 217/298 (72%), Gaps = 22/298 (7%)
Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
           GM+VL+DAR KL       IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct: 56  GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 109
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +++LW+D  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct: 110 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 162
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            TKGI E+   I N+PF  VDVGG RS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++    SI ++F EFEGDP  +
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFEGDPHCL 280
Query: 278 QAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
           + VQ FL+  F+  +RD +++PL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct: 281 RDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 338

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score =  253 bits (647), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 127/296 (42%), Positives = 187/296 (63%), Gaps = 21/296 (7%)
Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNT------CIDSRLFSTYVDE 97
           GM+VL+DAR KL       IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct: 59  GMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 112
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +++LW+D  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct: 113 IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLG-------VPDYIPSQQDILLARR 165
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            TKGI E      ++ F   DVGGQRS+R+KWF+CF+ VT+I+F V+ S+YDQ L+EDR+
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQ 225
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
           TNR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 226 TNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 283
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 284 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 339

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score =  236 bits (603), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
           F  M+ +I A   L       IP++ + N  HA+ + + D      S   + YVD +KSL
Sbjct: 78  FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 129
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W+D  I++ ++RR EYQL DS +Y+ ++ DR++     P    Y+P+ +D+L  R  T G
Sbjct: 130 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 182
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    NR+
Sbjct: 183 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 242
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA +
Sbjct: 243 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAR 300
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 301 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 352

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score =  236 bits (603), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
           F  M+ +I A   L       IP++ + N  HA+ + + D      S   + YVD +KSL
Sbjct: 80  FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 131
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W+D  I++ ++RR EYQL DS +Y+ ++ DR++     P    Y+P+ +D+L  R  T G
Sbjct: 132 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 184
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    NR+
Sbjct: 185 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 244
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA +
Sbjct: 245 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRDAQAAR 302
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 303 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 354

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
           F  M+ +I A   L       IP++ + N  HA+ + + D      S   + YVD +KSL
Sbjct: 78  FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 129
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W+D  I++ ++RR EYQL DS +Y+ ++ DR++     P    Y+P+ +D+L  R  T G
Sbjct: 130 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 182
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    NR+
Sbjct: 183 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 242
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA +
Sbjct: 243 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQAAR 300
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 301 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 352

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 127/292 (43%), Positives = 181/292 (61%), Gaps = 17/292 (5%)
Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
           F  M+ +I A   L       IP++ + N  HA+ + + D      S   + YVD +KSL
Sbjct: 52  FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKV--SAFENPYVDAIKSL 103
Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W+D  I++ ++RR EYQL DS +Y+ ++ DR++     P    Y+P+ +D+L  R  T G
Sbjct: 104 WNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVRVPTTG 156
Query: 162 ITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRL 221
           I E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    NR+
Sbjct: 157 IIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRM 216
Query: 222 HESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQ 281
            ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA +
Sbjct: 217 EESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRDAQAAR 274
Query: 282 TFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 275 EFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 326

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 123/294 (41%), Positives = 179/294 (60%), Gaps = 21/294 (7%)
Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFD--NNTCIDSRLFSTYVDELK 99
           F  M+ +I A   L       IP++ + N  HA+ + + D    +  D   ++     +K
Sbjct: 72  FTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEKVSAFDVPDYAA----IK 121
Query: 100 SLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT 159
           SLW+D  I++ ++RR EYQL DS +Y+ ++ DR++     P    Y+P+ +D+L     T
Sbjct: 122 SLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVA----DP---SYLPTQQDVLRVCVPT 174
Query: 160 KGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTN 219
            GI E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    N
Sbjct: 175 TGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNEN 234
Query: 220 RLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQA 279
           R+ ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA
Sbjct: 235 RMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYS--HLVDYFPEYDGPQRDAQA 292
Query: 280 VQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            + F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 293 AREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 346

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 105/248 (42%), Positives = 142/248 (57%), Gaps = 11/248 (4%)
Query: 87  DSRLFST-YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDY 145
           D+  FS   +  +  LW D  I++ F R  EYQL DS +Y+ D+ DRI          DY
Sbjct: 95  DTEPFSAELLSAMMRLWGDSGIQECFNRSREYQLNDSAKYYLDSLDRIGA-------GDY 147
Query: 146 IPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS 205
            P+ +DIL  R  T GI E      N+ F   DVGGQRS+R+KW  CF+ VT+I+F V+ 
Sbjct: 148 QPTEQDILRTRVKTTGIVETHFTFKNLHFRLFDVGGQRSERKKWIHCFEDVTAIIFCVAL 207
Query: 206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAE 265
           S YDQ L ED  TNR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I  
Sbjct: 208 SGYDQVLHEDETTNRMHESLMLFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSPLTIC- 266
Query: 266 HFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH 325
            FPE+ G     +    ++   F++  R   K ++ H T A DT NI++VF+AV + I+ 
Sbjct: 267 -FPEYPG-SNTYEDAAAYIQTQFESKNRSPNKEIYCHMTCATDTNNIQVVFDAVTDIIIA 324
Query: 326 RNLRDLML 333
            NLR   L
Sbjct: 325 NNLRGCGL 332

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score =  194 bits (492), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 179 PTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  193 bits (491), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score =  193 bits (491), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 100 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 152
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 153 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 212
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 213 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 270
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 271 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 326

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 103 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 155
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 156 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 215
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 216 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 273
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 274 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 329

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 101 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 153
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 154 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 213
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 214 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 271
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 272 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 327

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 96  IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 148
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 149 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 208
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 209 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 266
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 267 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 322

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 98  IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 150
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 151 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 210
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 211 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 268
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 269 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 324

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 97  IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 149
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 150 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 209
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 210 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 267
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 268 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 323

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score =  193 bits (491), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 98  IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 150
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 151 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 210
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 211 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 268
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 269 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 324

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 139/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 102 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 154
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 155 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 214
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 215 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 272
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 273 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 328

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 179
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 239
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 240 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 297
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N+  VF+AV + I+  NL+D  L
Sbjct: 298 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVCFVFDAVTDVIIKNNLKDCGL 353

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score =  192 bits (487), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 97/236 (41%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 129 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 181
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 182 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 241
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 242 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 299
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL D  L
Sbjct: 300 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLPDCGL 355

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  191 bits (486), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 179
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DV GQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 239
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 240 MNRMHESMKLFDSICNNKCFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 297
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 298 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 353

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVG QRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  191 bits (485), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 127 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 179
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DV GQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 180 KTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 239
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 240 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 297
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 298 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 353

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score =  190 bits (483), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 126 IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGG RS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 179 KTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 239 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 297 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 352

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score =  190 bits (483), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EY L DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 101 IKRLWKDSGVQACFNRSREYLLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 153
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 154 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 213
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 214 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 271
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D  L
Sbjct: 272 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGL 327

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score =  190 bits (483), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRIS+        +YIP+ +D+L  R 
Sbjct: 96  IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 148
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 149 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 208
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F   S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 209 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 266
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    +R + K ++ HFT A DT+N++ VF+AV + I+  NL++  L
Sbjct: 267 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 322

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score =  190 bits (483), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 96/236 (40%), Positives = 138/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRIS+        +YIP+ +D+L  R 
Sbjct: 103 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 155
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 156 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 215
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F   S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 216 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 273
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    +R + K ++ HFT A DT+N++ VF+AV + I+  NL++  L
Sbjct: 274 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score =  190 bits (483), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94  YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
           + +  K+LW+D  +R  +ER +EYQL D  QYF D  D I +        DY+PS++D+L
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 198
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
             R  T GI E    +  + F   DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+  + 
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
           ED +TNRL E+ N+F +I NN   R +S ILFLNK DLLAEK+   K+ I ++FPEF   
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 318
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
               +  P+  +  +     YF             D +   + HFT AVDTENI+ VFN 
Sbjct: 319 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378
Query: 319 VKNTILHRNLRDLML 333
            ++ I   +LR   L
Sbjct: 379 CRDIIQRMHLRQYEL 393

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score =  190 bits (483), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94  YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
           + +  K+LW+D  +R  +ER +EYQL D  QYF D  D I +        DY+PS++D+L
Sbjct: 132 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 184
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
             R  T GI E    +  + F   DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+  + 
Sbjct: 185 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 244
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
           ED +TNRL E+ N+F +I NN   R +S ILFLNK DLLAEK+   K+ I ++FPEF   
Sbjct: 245 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 304
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
               +  P+  +  +     YF             D +   + HFT AVDTENI+ VFN 
Sbjct: 305 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 364
Query: 319 VKNTILHRNLRDLML 333
            ++ I   +LR   L
Sbjct: 365 CRDIIQRMHLRQYEL 379

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score =  190 bits (483), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94  YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
           + +  K+LW+D  +R  +ER +EYQL D  QYF D  D I +        DY+PS++D+L
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 198
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
             R  T GI E    +  + F   DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+  + 
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
           ED +TNRL E+ N+F +I NN   R +S ILFLNK DLLAEK+   K+ I ++FPEF   
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 318
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
               +  P+  +  +     YF             D +   + HFT AVDTENI+ VFN 
Sbjct: 319 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378
Query: 319 VKNTILHRNLRDLML 333
            ++ I   +LR   L
Sbjct: 379 CRDIIQRMHLRQYEL 393

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94  YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
           + +  K+LW+D  +R  +ER +EYQL D  QYF D  D I +        DY+PS++D+L
Sbjct: 132 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 184
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
             R  T GI E    +  + F   DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+  + 
Sbjct: 185 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 244
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
           ED +TNRL E+ N+F +I NN   R +S ILFLNK DLLAEK+   K+ I ++FPEF   
Sbjct: 245 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 304
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
               +  P+  +  +     YF             D +   + HFT AVDTENI+ VFN 
Sbjct: 305 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 364
Query: 319 VKNTILHRNLRDLML 333
            ++ I   +LR   L
Sbjct: 365 CRDIIQRMHLRQYEL 379

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score =  190 bits (482), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/255 (40%), Positives = 145/255 (56%), Gaps = 22/255 (8%)
Query: 94  YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDIL 153
           + +  K+LW+D  +R  +ER +EYQL D  QYF D  D I +        DY+PS++D+L
Sbjct: 146 FYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLL 198
Query: 154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLV 213
             R  T GI E    +  + F   DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+  + 
Sbjct: 199 RCRVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIR 258
Query: 214 EDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEF--- 270
           ED +TNRL E+ N+F +I NN   R +S ILFLNK DLLAEK+   K+ I ++FPEF   
Sbjct: 259 EDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARY 318
Query: 271 ----EGDPQDMQAVQTFLLNYF--------KAVKRDEKKPLFHHFTTAVDTENIKIVFNA 318
               +  P+  +  +     YF             D +   + HFT AVDTENI+ VFN 
Sbjct: 319 TTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFND 378
Query: 319 VKNTILHRNLRDLML 333
            ++ I   +LR   L
Sbjct: 379 CRDIIQRMHLRQYEL 393

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score =  189 bits (481), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/233 (40%), Positives = 137/233 (58%), Gaps = 9/233 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRIS+        +YIP+ +D+L  R 
Sbjct: 126 IKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 178
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 179 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 238
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F   S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 239 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 296
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 330
           +A       +    +R + K ++ HFT A DT+N++ VF+AV + I+  NL++
Sbjct: 297 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 349

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/238 (40%), Positives = 141/238 (59%), Gaps = 9/238 (3%)
Query: 96  DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
           D ++ LW D  I+  F+R SEYQL DS  Y+  + +R+     +P    Y+P+ +D+L +
Sbjct: 96  DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLV----TP---GYVPTEQDVLRS 148
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
           R  T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED
Sbjct: 149 RVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 208
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
              NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G   
Sbjct: 209 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNT 266
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
             +A     + + +   R + K ++ H T A DT+N+K VF+AV + I+  NL+D  L
Sbjct: 267 YEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 324

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score =  187 bits (475), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 137/236 (58%), Gaps = 9/236 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EY L DS  Y+ ++ DRIS+        +YIP+ +D+L  R 
Sbjct: 103 IKRLWRDGGVQACFSRSREYLLNDSASYYLNDLDRISQ-------SNYIPTQQDVLRTRV 155
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 156 KTTGIVETHFTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 215
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F   S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 216 MNRMHESMKLFDSICNNKWFTETSIILFLNKKDLFEEKIKRSPLTIC--YPEYTGSNTYE 273
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           +A       +    +R + K ++ HFT A DT+N++ VF+AV + I+  NL++  L
Sbjct: 274 EAAAYIQCQFEDLNRRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKECGL 329

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/238 (39%), Positives = 141/238 (59%), Gaps = 9/238 (3%)
Query: 96  DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
           D ++ LW D  I+  F+R SEYQL DS  Y+  + +R+       +   Y+P+ +D+L +
Sbjct: 127 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL-------VTPGYVPTEQDVLRS 179
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
           R  T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED
Sbjct: 180 RVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 239
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
              NR+HES ++F++I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G   
Sbjct: 240 EEMNRMHESMHLFNSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNT 297
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
             +A     + + +   R + K ++ H T A DT+N+K VF+AV + I+  NL+D  L
Sbjct: 298 YEEAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 355

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 134/227 (59%), Gaps = 9/227 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 95  IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 147
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 148 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 207
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 208 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 265
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324
           +A       +    KR + K ++ HFT A DT+N++ VF+AV + I+
Sbjct: 266 EAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 312

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score =  186 bits (471), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 139/238 (58%), Gaps = 9/238 (3%)
Query: 96  DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
           D ++ LW D  I+  F+R SEYQL DS  Y+  + +R+       +   Y+P+ +D+L +
Sbjct: 121 DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERL-------VTPGYVPTEQDVLRS 173
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
           R  T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED
Sbjct: 174 RVKTTGIIETQFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 233
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
              NR HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G   
Sbjct: 234 EEXNRXHESXKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNT 291
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
             +A     + + +   R + K ++ H T A DT+N+K VF+AV + I+  NL+D  L
Sbjct: 292 YEEAGNYIKVQFLELNXRRDVKEIYSHXTCATDTQNVKFVFDAVTDIIIKENLKDCGL 349

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score =  184 bits (468), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/227 (40%), Positives = 134/227 (59%), Gaps = 9/227 (3%)
Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +K LW D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R 
Sbjct: 96  IKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRV 148
Query: 158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR 217
            T GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED  
Sbjct: 149 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 208
Query: 218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDM 277
            NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S  +I   +PE+ G     
Sbjct: 209 MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTIC--YPEYAGSNTYE 266
Query: 278 QAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL 324
           +A       +    KR + K ++ HFT + DT+N++ VF+AV + I+
Sbjct: 267 EAAAYIQCQFEDLNKRKDTKEIYTHFTCSTDTKNVQFVFDAVTDVII 313

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score =  181 bits (459), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 92/238 (38%), Positives = 140/238 (58%), Gaps = 9/238 (3%)
Query: 96  DELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHA 155
           D ++ LW D  I+  F+R SEYQL DS  Y+  + +R+     +P    Y+P+ +D+L +
Sbjct: 95  DIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLV----TP---GYVPTEQDVLRS 147
Query: 156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
           R  T GI E      ++ F   DVGGQRS+R+KW  CF+ VT I+F+ + S YD  LVED
Sbjct: 148 RVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVED 207
Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQ 275
              NR+HES ++F++I N+  F   S +LFLNK D+ +EK++ +  SI   FP++ G   
Sbjct: 208 DEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVFSEKIKKAHLSIC--FPDYNGPNT 265
Query: 276 DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
              A     + + +   R + K ++ H T A DT+N+K VF+AV + I+  NL+D  L
Sbjct: 266 YEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKENLKDCGL 323

>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 124/239 (51%), Gaps = 27/239 (11%)
Query: 95  VDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILH 154
           V ++++LW D  I+  +E  +++QL D  +Y F+N  RI+        +DY+P+ +D++H
Sbjct: 91  VGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAX-------EDYVPTEEDLIH 143
Query: 155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE 214
            R  T GI E+  V+ +IPF  +DVGGQRS+R+ W   F  V   +F+ S +EYD  L E
Sbjct: 144 NRTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYE 203
Query: 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDP 274
           D  T+RL ES  +F  I  N   +    ++FLNK DL  EKL  +K  +   FPE+ G  
Sbjct: 204 DGNTSRLTESIAVFKDIXTNEFLKGAVKLIFLNKXDLFEEKL--TKVPLNTIFPEYTGGD 261
Query: 275 QDMQAVQTFLLNYFKAVKRDEK-----------------KPLFHHFTTAVDTENIKIVF 316
             +   Q ++   F    + E+                 + ++ + T A D  NIK VF
Sbjct: 262 NAVXGAQ-YIQQLFTGKLQTEEXNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF 319

>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana Length = 354

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 141/260 (54%), Gaps = 22/260 (8%)
Query: 89  RLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPS 148
           RL     + +++LW D AI++   R +E Q+ D  +Y  +N  R+S  +N      YIP+
Sbjct: 101 RLTKDIAEGIETLWKDPAIQETXARGNELQVPDXTKYLMENLKRLSD-IN------YIPT 153
Query: 149 NKDILHARKATKGITE--FTIVISNIP----FLFVDVGGQRSQRRKWFQCFDSVTSILFL 202
            +D+L+AR  T G+ E  F+ V  N      +   DVGGQR++RRKW   F+ VT+++F 
Sbjct: 154 KEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFC 213
Query: 203 VSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTS 262
            + SEYDQTL ED + NR+ E++ +FD ++    F   SF+LFLNK D+  +K+     +
Sbjct: 214 AAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLN 273
Query: 263 IAEHFPEFE---GDPQDMQAVQTFLLNYFKAVKRDEKKP-----LFHHF-TTAVDTENIK 313
           + E F +++      Q+++    F+   F+ +      P     +F  + TTA+D + +K
Sbjct: 274 VCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVK 333
Query: 314 IVFNAVKNTILHRNLRDLML 333
             F  V  T+  RNL +  L
Sbjct: 334 KTFKLVDETLRRRNLLEAGL 353

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   NI F   DVGGQ   R  W   + +   ++F+V S+        DR  
Sbjct: 31  TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSN--------DR-- 80
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
           +R+ E+R +   ++N    RN ++++F NK DL
Sbjct: 81  SRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 113

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 151 DILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ 210
           D L   + T   T   + I NI F   D+GG    RR W   F  V  I+FLV +++ + 
Sbjct: 24  DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE- 82
Query: 211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250
                    R  E+R   D + N    ++V F++  NK D
Sbjct: 83  ---------RFDEARVELDALFNIAELKDVPFVILGNKID 113

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   NI F   DVGGQ   R  W   + +   ++F+V S+        DR  
Sbjct: 48  TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSN--------DR-- 97
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
           +R+ E+R +   ++N    RN ++++F NK DL
Sbjct: 98  SRIGEAREVMQRMLNEDELRNAAWLVFANKQDL 130

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 151 DILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ 210
           D L   + T   T   + I NI F   D+GG    RR W   F  V  I+FLV +++ + 
Sbjct: 46  DRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE- 104
Query: 211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD 250
                    R  E+R   D + N    ++V F++  NK D
Sbjct: 105 ---------RFDEARVELDALFNIAELKDVPFVILGNKID 135

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   NI F   DVGGQ   R  W   + +   ++F++ S+        DR  
Sbjct: 48  TIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSN--------DR-- 97
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
           +R+ E+R +   ++N    RN  +++F NK DL
Sbjct: 98  SRIGEAREVMQRMLNEDELRNAVWLVFANKQDL 130

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   NI F   DVGGQ   R  W   + +  +I+F+V S++ D         
Sbjct: 48  TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRD--------- 98
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     ++N    RN   ++F NK DL
Sbjct: 99  -RIGEAREELMKMLNEDEMRNAILLVFANKHDL 130

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   +     ++F+V  ++ D         
Sbjct: 353 TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 403
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     IIN+   R+   ++F NK DL
Sbjct: 404 -RIDEARQELHRIINDREMRDAIILIFANKQDL 435

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   +     ++F+V  ++ D         
Sbjct: 31  TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 81
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     IIN+   R+   ++F NK DL
Sbjct: 82  -RIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   +     ++F+V  ++ D         
Sbjct: 31  TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 81
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     IIN+   R+   ++F NK DL
Sbjct: 82  -RIDEARQELHRIINDREMRDAIILIFANKQDL 113

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   +     ++F+V  ++ D         
Sbjct: 43  TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 93
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     IIN+   R+   ++F NK DL
Sbjct: 94  -RIDEARQELHRIINDREMRDAIILIFANKQDL 125

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   +     ++F+V  ++ D         
Sbjct: 44  TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 94
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     IIN+   R+   ++F NK DL
Sbjct: 95  -RIDEARQELHRIINDREMRDAIILIFANKQDL 126

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   NI F   DVGGQ   R  W   F +   ++F+V S++ D         
Sbjct: 51  TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD--------- 101
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R+    ++N    R+   ++F NK DL
Sbjct: 102 -RVVEARDELHRMLNEDELRDAVLLVFANKQDL 133

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T G    T+   N+ F   DVGGQ   R  W   +     ++F+V  ++ D         
Sbjct: 31  TVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD--------- 81
Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R+ E+R     IIN+   R+   ++F NK DL
Sbjct: 82  -RIDEARQELHRIINDREXRDAIILIFANKQDL 113

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
           + I+ + F   D+GG    RR W     ++  I+FLV  ++++          RL ES+ 
Sbjct: 61  LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKE 110
Query: 227 IFDTIINNVIFRNVSFILFLNKTD 250
             D+++ +    NV  ++  NK D
Sbjct: 111 ELDSLMTDETIANVPILILGNKID 134

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
           + I+ + F   D+GG    RR W     ++  I+FLV  ++++          RL ES+ 
Sbjct: 55  LTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKE 104
Query: 227 IFDTIINNVIFRNVSFILFLNKTD 250
             D+++ +    NV  ++  NK D
Sbjct: 105 ELDSLMTDETIANVPILILGNKID 128

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN 226
           + I+ + F   D+GG    RR W     ++  I+FLV  ++++          RL ES+ 
Sbjct: 64  LTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE----------RLLESKE 113
Query: 227 IFDTIINNVIFRNVSFILFLNKTD 250
             D+++ +    NV  ++  NK D
Sbjct: 114 ELDSLMTDETIANVPILILGNKID 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	5e-90
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	1e-88
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	5e-84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	5e-84
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	6e-80
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	6e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	6e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-09
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-09
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-09
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-09
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-09
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	8e-09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	2e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	6e-08
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-08
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-06
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	4e-04
2fh5_B	214	SR-beta, signal recognition particle receptor beta	5e-04
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-04

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score =  272 bits (697), Expect = 5e-90
 Identities = 151/285 (52%), Positives = 207/285 (72%), Gaps = 16/285 (5%)

Query: 57  HDNKFGIPWQNDMNAIHAEKIFQFDNNTC------IDSRLFSTYVDELKSLWDDVAIRQA 110
              K  IPW ++ N +H +K+  FD          +++R+F  Y+  +++LW+D  I+ A
Sbjct: 87  AREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPAIRALWEDSGIQNA 146

Query: 111 FERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVIS 170
           ++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+ TKGI E+   I 
Sbjct: 147 YDRRREFQLGESVKYFLDNLDKLGVP-------DYIPSQQDILLARRPTKGIHEYDFEIK 199

Query: 171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT 230
           N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ L+EDR+TNRL ES NIF+T
Sbjct: 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFET 259

Query: 231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA 290
           I+NN +F NVS ILFLNKTDLL EK++     I ++F EFEGDP  ++ VQ FL+  F+ 
Sbjct: 260 IVNNRVFSNVSIILFLNKTDLLEEKVQVVS--IKDYFLEFEGDPHCLRDVQKFLVECFRG 317

Query: 291 VKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLMLQ 334
            +RD +++PL+HHFTTA++TENI++VF  VK+TILH NL+ LMLQ
Sbjct: 318 KRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLMLQ 362

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score =  268 bits (685), Expect = 1e-88
 Identities = 121/275 (44%), Positives = 174/275 (63%), Gaps = 11/275 (4%)

Query: 59  NKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQ 118
           +   IP++ + N  HA+ + + D      S   + YVD +KSLW+D  I++ ++RR EYQ
Sbjct: 63  DTLKIPYKYEHNKAHAQLVREVDVEK--VSAFENPYVDAIKSLWNDPGIQECYDRRREYQ 120

Query: 119 LGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVD 178
           L DS +Y+ ++ DR++          Y+P+ +D+L  R  T GI E+   + ++ F  VD
Sbjct: 121 LSDSTKYYLNDLDRVADP-------SYLPTQQDVLRVRVPTTGIIEYPFDLQSVIFRMVD 173

Query: 179 VGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR 238
           VGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE    NR+ ES+ +F TII    F+
Sbjct: 174 VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ 233

Query: 239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP 298
           N S ILFLNK DLL EK+  S   + ++FPE++G  +D QA + F+L  F  +  D  K 
Sbjct: 234 NSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI 291

Query: 299 LFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
           ++ HFT A DTENI+ VF AVK+TIL  NL++  L
Sbjct: 292 IYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNL 326

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score =  258 bits (660), Expect = 5e-84
 Identities = 106/292 (36%), Positives = 152/292 (52%), Gaps = 22/292 (7%)

Query: 57  HDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSE 116
             +    P +           +        D      + +  K+LW+D  +R  +ER +E
Sbjct: 109 AMSNLVPPVELANPENQFRVDYILSVMNVPDFDFPPEFYEHAKALWEDEGVRACYERSNE 168

Query: 117 YQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLF 176
           YQL D  QYF D  D I +        DY+PS++D+L  R  T GI E    +  + F  
Sbjct: 169 YQLIDCAQYFLDKIDVIKQD-------DYVPSDQDLLRCRVLTSGIFETKFQVDKVNFHM 221

Query: 177 VDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI 236
            DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+  + ED +TNRL E+ N+F +I NN  
Sbjct: 222 FDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281

Query: 237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE------------GDPQDMQAVQTFL 284
            R +S ILFLNK DLLAEK+   K+ I ++FPEF             G+   +   + F+
Sbjct: 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFI 341

Query: 285 LNYFKAVKR---DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLML 333
            + F  +     D +   + HFT AVDTENI+ VFN  ++ I   +LR   L
Sbjct: 342 RDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 393

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score =  256 bits (656), Expect = 5e-84
 Identities = 84/307 (27%), Positives = 146/307 (47%), Gaps = 22/307 (7%)

Query: 42  FPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSL 101
           +  +K+L D   +   +      +     +I   +            RL     + +++L
Sbjct: 54  YQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEKLSEIGGRLDYPRLTKDIAEGIETL 113

Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKG 161
           W D AI++   R +E Q+ D  +Y  +N  R+S         +YIP+ +D+L+AR  T G
Sbjct: 114 WKDPAIQETCARGNELQVPDCTKYLMENLKRLSDI-------NYIPTKEDVLYARVRTTG 166

Query: 162 ITEFTIVISN------IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVED 215
           + E               +   DVGGQR++RRKW   F+ VT+++F  + SEYDQTL ED
Sbjct: 167 VVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFED 226

Query: 216 RRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE---G 272
            + NR+ E++ +FD ++    F   SF+LFLNK D+  +K+     ++ E F +++    
Sbjct: 227 EQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSS 286

Query: 273 DPQDMQAVQTFLLNYFKAVKR------DEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR 326
             Q+++    F+   F+ +           +    + TTA+D + +K  F  V  T+  R
Sbjct: 287 GKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRR 346

Query: 327 NLRDLML 333
           NL +  L
Sbjct: 347 NLLEAGL 353

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score =  246 bits (629), Expect = 6e-80
 Identities = 99/287 (34%), Positives = 148/287 (51%), Gaps = 16/287 (5%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
            +  +I A  +L  D        +                   +  + +     +K LW 
Sbjct: 79  SIIAIIRAMGRLKIDFGDAARADDARQLFV-------LAGAAEEGFMTAELAGVIKRLWK 131

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGIT 163
           D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R  T GI 
Sbjct: 132 DSGVQACFNRSREYQLNDSAAYYLNDLDRIAQP-------NYIPTQQDVLRTRVKTTGIV 184

Query: 164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHE 223
           E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED   NR+HE
Sbjct: 185 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHE 244

Query: 224 SRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTF 283
           S  +FD+I NN  F + S ILFLNK DL  EK++ S   +   +PE+ G     +A    
Sbjct: 245 SMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP--LTICYPEYAGSNTYEEAAAYI 302

Query: 284 LLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD 330
              +    KR + K ++ HFT A DT+N++ VF+AV + I+  NL+D
Sbjct: 303 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 349

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
            + I+ + F   D+GG    RR W     ++  I+FLV  +        D    RL ES+
Sbjct: 63  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA--------DHE--RLLESK 112

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
              D+++ +    NV  ++  NK D 
Sbjct: 113 EELDSLMTDETIANVPILILGNKIDR 138

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
            IVI+N  FL  D+GGQ S R  W   + +   ++ +V S+        DR   R+  +R
Sbjct: 59  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST--------DRE--RISVTR 108

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
                ++ +   R    ++F NK D+
Sbjct: 109 EELYKMLAHEDLRKAGLLIFANKQDV 134

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 57.2 bits (139), Expect = 6e-10
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
           T   T   + I NI F   D+GG    RR W   F  V  I+FLV ++        D   
Sbjct: 54  TWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA--------DP-- 103

Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDL 251
            R  E+R   D + N    ++V F++  NK D 
Sbjct: 104 ERFDEARVELDALFNIAELKDVPFVILGNKIDA 136

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   NI F   D+GGQ   R  W   F    +++++V S+        DR   R+  ++
Sbjct: 60  TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST--------DRD--RMGVAK 109

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
           +    +++    R    ++F NK DL
Sbjct: 110 HELYALLDEDELRKSLLLIFANKQDL 135

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
            IVI+N  FL  D+GGQ S R  W   + +   ++ +V S+        DR   R+  +R
Sbjct: 54  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDST--------DRE--RISVTR 103

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
                ++ +   R    ++F NK D+
Sbjct: 104 EELYKMLAHEDLRKAGLLIFANKQDV 129

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   N+     D+GGQ S R  W   +    +++F+V S+        D+  +R+  + 
Sbjct: 56  TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST--------DK--DRMSTAS 105

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
                ++     ++ + ++F NK D 
Sbjct: 106 KELHLMLQEEELQDAALLVFANKQDQ 131

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 54.1 bits (131), Expect = 4e-09
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   NI F   DVGGQ   R  W   F +   ++F+V S+        DR   R++E+R
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN--------DR--ERVNEAR 87

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
                ++     R+   ++F NK DL
Sbjct: 88  EELMRMLAEDELRDAVLLVFANKQDL 113

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           ++          D+GGQR  R  W   F++   +++++ S+        DR+  R  E+ 
Sbjct: 54  SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSA--------DRK--RFEETG 103

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
                ++       V  ++F NK DL
Sbjct: 104 QELTELLEEEKLSCVPVLIFANKQDL 129

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+          DVGGQ+S R  W   F+S   ++++V S+        DR+  R+ + +
Sbjct: 56  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA--------DRQ--RMQDCQ 105

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
               +++        + ++F NK DL
Sbjct: 106 RELQSLLVEERLAGATLLIFANKQDL 131

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 53.3 bits (129), Expect = 8e-09
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   N+ F   D+GG  S R  W   + +  +++++V S         DR   R+  S+
Sbjct: 45  TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC--------DRD--RIGISK 94

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
           +    ++     R    ++F NK D+
Sbjct: 95  SELVAMLEEEELRKAILVVFANKQDM 120

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
            I   N+     D+GGQ   R  W +    V++I+++V ++        D+   ++  S+
Sbjct: 61  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA--------DQE--KIEASK 110

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
           N    +++    + +  ++  NK DL
Sbjct: 111 NELHNLLDKPQLQGIPVLVLGNKRDL 136

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 52.6 bits (126), Expect = 6e-08
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   NI F   DVGGQ   R  W   F +   ++F+V S+        DR   R++E+R
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN--------DR--ERVNEAR 252

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
                ++     R+   ++F NK DL
Sbjct: 253 EELMRMLAEDELRDAVLLVFANKQDL 278

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 10/86 (11%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
           T+   NI F   DVGGQ   R  W   F +   ++F+V S+        DR   R+ ES 
Sbjct: 67  TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN--------DRE--RVQESA 116

Query: 226 NIFDTIINNVIFRNVSFILFLNKTDL 251
           +    ++     R+   ++F NK D+
Sbjct: 117 DELQKMLQEDELRDAVLLVFANKQDM 142

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
               S++ F   D+ GQ   R  W   +    +I+F++ SS        DR   R+  ++
Sbjct: 61  KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS--------DRL--RMVVAK 110

Query: 226 NIFDTIINN--VIFRNVSFILFLNKTDL 251
              DT++N+  +  R +  + F NK DL
Sbjct: 111 EELDTLLNHPDIKHRRIPILFFANKMDL 138

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTS----ILFLVSSSEYDQTLVEDRRTNRL 221
                      VD  G    R K      +       ++F+V S+        D +  +L
Sbjct: 85  AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST-------VDPK--KL 135

Query: 222 HESRNIFDTIINN---VIFRNVSFILFLNKTDL 251
             +      I++         +  ++  NK++L
Sbjct: 136 TTTAEFLVDILSITESSCENGIDILIACNKSEL 168

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTS----ILFLVSSSEYDQTLVEDRRTNRL 221
                      VD  G    R K      +       ++F+V S+        D +  +L
Sbjct: 49  AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST-------VDPK--KL 99

Query: 222 HESRNIFDTIINN---VIFRNVSFILFLNKTDL 251
             +      I++         +  ++  NK++L
Sbjct: 100 TTTAEFLVDILSITESSCENGIDILIACNKSEL 132

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 48/368 (13%), Positives = 107/368 (29%), Gaps = 117/368 (31%)

Query: 21  RLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQF 80
                      +         F           ++L  N     +   M+ I  E     
Sbjct: 63  GTLRLFWTLLSK--QEEMVQKFVE---------EVLRIN---YKFL--MSPIKTE----- 101

Query: 81  DNNTCID-SRLFSTYVDELKSLWDDV---------------AIRQAFE--RRSEY----- 117
                   S +   Y+++   L++D                 +RQA    R ++      
Sbjct: 102 ----QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 118 QLG-------------DSIQYFFDN---WDRIS-RRVNSPLFQDYIPSNKDILHARKATK 160
            LG               +Q   D    W  ++ +  NSP  +  +   + +L+  +   
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFW--LNLKNCNSP--ETVLEMLQKLLY--QIDP 211

Query: 161 GITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFL--VSSSE----YD---QT 211
             T  +   SNI      +   +++ R+  +       +L L  V +++    ++   + 
Sbjct: 212 NWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 212 LVEDRRTNRLHESRNIFDTIINN------VIFRNVSFI------LFLNKTDLLAEKLR-- 257
           L+    T R    + + D +         +   +++        L L   D   + L   
Sbjct: 269 LL----TTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 258 TSKTS------IAEHFPEFEGDPQ-----DMQAVQTFLLNYFKAVKRDEKKPLFHHFTTA 306
              T+      IAE   +           +   + T + +    ++  E + +F     +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--S 379

Query: 307 VDTENIKI 314
           V   +  I
Sbjct: 380 VFPPSAHI 387

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 46/375 (12%), Positives = 115/375 (30%), Gaps = 113/375 (30%)

Query: 7   DGNC---VETR-ACVF-----HVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLH 57
           + +C   + TR   V          + S++        + + T      +L     K L 
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLD------HHSMTLTPDEVKSLL----LKYLD 312

Query: 58  DNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEY 117
                +P +  +   +  ++            + +  + +  + WD+      ++  +  
Sbjct: 313 CRPQDLPRE--VLTTNPRRL-----------SIIAESIRDGLATWDN------WKHVNCD 353

Query: 118 QLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI------SN 171
           +L   I+   +  +    R    +F                   I    + +       +
Sbjct: 354 KLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAH--------IPTILLSLIWFDVIKS 402

Query: 172 IPFLFVDVGGQRSQRRKWFQCFDSVTSI--LFLVSSSEYD------QTLVEDRRTNRLHE 223
              + V+   + S   K  +  +S  SI  ++L    + +      +++V+     +  +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 224 SRNIFDTIINNVIFRNVSFI------------------LFLNKTDLLAEKLRTSKTS--- 262
           S ++    ++   +   S I                  +FL+    L +K+R   T+   
Sbjct: 461 SDDLIPPYLDQYFY---SHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNA 516

Query: 263 -----------------IAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTT 305
                            I ++ P++E   + + A+  FL    + +   +   L      
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYE---RLVNAILDFLPKIEENLICSKYTDLLR---I 570

Query: 306 AVDTENIKIVFNAVK 320
           A+  E+  I   A K
Sbjct: 571 ALMAEDEAIFEEAHK 585

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 17/125 (13%)

Query: 139 SPLFQDYIPSNKDILHARKATKGITEFTIVI-SNIPFLFVDVGGQRSQRRKWFQC---FD 194
             +F    P   + L   ++T  I +  I   S + F   D  GQ       F     F 
Sbjct: 38  KVVFHKMSP--NETLFL-ESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94

Query: 195 SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE 254
              ++++++ +        +D     L                 +++F +F++K D L++
Sbjct: 95  GTGALIYVIDA--------QDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSD 144

Query: 255 KLRTS 259
             +  
Sbjct: 145 DHKIE 149

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 15/98 (15%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 159 TKGITEFTIVISN---IPFLFVDVGGQRSQRRKWFQC-FDSVTSILFLVSSSEYDQTLVE 214
           +   +     ++N        +D+ G  S R +       S  +++F+V S+ + + + +
Sbjct: 38  SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKD 97

Query: 215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFL-NKTDL 251
                       ++  +I+++  +N   +L   NK D+
Sbjct: 98  VAEF--------LYQVLIDSMALKNSPSLLIACNKQDI 127

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 16/91 (17%)

Query: 166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR 225
            +      F    V GQ             V  I+F+            D   NRL  + 
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVA-----------DSAPNRLRANA 116

Query: 226 NIFDTIINNVI-----FRNVSFILFLNKTDL 251
                +  N+        +V  ++ +NK DL
Sbjct: 117 ESMRNMRENLAEYGLTLDDVPIVIQVNKRDL 147

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	100.0
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	100.0
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	100.0
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	100.0
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	100.0
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.81
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.77
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.77
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.76
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.76
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.75
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.75
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.74
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.74
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.74
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.73
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.73
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.73
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.72
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.72
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.68
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.68
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.67
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.67
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.67
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.67
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.67
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.67
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.67
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.66
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.66
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.66
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.66
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.66
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.66
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.66
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.66
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.65
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.65
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.65
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.65
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.65
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.65
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.64
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.64
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.64
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.64
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.64
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.64
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.64
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.64
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.63
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.63
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.63
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.63
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.62
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.62
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.62
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.62
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.62
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.62
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.62
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.62
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.62
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.62
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.62
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.62
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.62
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.61
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.61
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.61
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.61
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.61
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.61
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.6
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.6
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.6
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.6
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.6
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.6
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.59
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.59
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.59
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.59
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.59
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.59
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.59
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.59
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.58
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.58
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.58
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.57
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.57
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.57
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.56
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.56
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.55
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.54
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.54
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.54
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.52
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.51
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.5
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.49
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.24
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.44
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.39
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.39
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.38
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.38
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.38
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.35
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.35
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.29
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.27
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.25
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.25
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.23
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.2
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.19
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.19
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.17
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.16
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.11
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.1
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.08
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.08
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.07
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.03
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.03
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.02
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.99
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.99
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.98
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.97
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.97
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.95
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.95
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.95
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.94
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.91
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.9
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.89
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.88
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.88
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.87
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.82
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.81
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.8
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.8
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.79
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.79
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.78
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.76
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.69
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.68
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.68
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.67
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.65
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.63
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.62
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.62
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.6
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.59
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.56
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.56
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.55
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.53
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.52
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.5
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.36
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.3
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.3
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.26
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.2
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.15
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.12
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.11
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.06
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.05
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.03
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.02
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.01
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.99
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.91
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.8
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.5
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.48
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.47
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.41
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.37
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.34
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.2
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.09
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.68
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	96.65
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.55
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.47
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.09
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.67
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	94.63
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	94.44
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	93.29
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	90.63

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=100.00  E-value=1.4e-75  Score=557.67  Aligned_cols=303  Identities=42%  Similarity=0.714  Sum_probs=287.8

Q ss_pred             eeeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcH
Q psy3651          13 TRACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFS   92 (334)
Q Consensus        13 ~~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   92 (334)
                      -||.|||..||+++|+..||+  +||.|++++|++|++||+.+      +|++++|+++.+++.++......  ..++++
T Consensus        25 KQmkiih~~gfs~~e~~~~~~--~i~~N~~~~~~~li~a~~~l------~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~   94 (327)
T 3ohm_A           25 KQMRIIHGSGYSDEDKRGFTK--LVYQNIFTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEK--VSAFEN   94 (327)
T ss_dssp             HHHHHHHSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHT------TCCCSSTHHHHHHHHHHTCCGGG--CCCCCT
T ss_pred             HHHHHHHcCCCCHHHHHHHHH--HHHHhHHHHHHHHHHHHHhc------CCCCCCchhHHHHHHHhcccccc--cccccH
Confidence            378999999999999999999  99999999999999999999      99999999999999998765443  457999


Q ss_pred             HHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCc
Q psy3651          93 TYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNI  172 (334)
Q Consensus        93 ~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~  172 (334)
                      +++++|+.||+||+||+||+|++||+|+|+++|||++++||+.       ++|.||.+|+++++.||+|+.+..+.++++
T Consensus        95 e~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~-------~~Y~PT~~Dilr~r~~TiGi~~~~~~~~~v  167 (327)
T 3ohm_A           95 PYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVAD-------PSYLPTQQDVLRVRVPTTGIIEYPFDLQSV  167 (327)
T ss_dssp             THHHHHHHHHTCHHHHHHHHGGGGSCCCTTHHHHHTTHHHHHS-------TTCCCCHHHHTTCCCCCCSEEEEEEEETTE
T ss_pred             HHHHHHHHHHcCHHHHHHHHccccceecccHHHHHHHHHHHhc-------cCCCccccchhcccCceeeEEEEEEEeece
Confidence            9999999999999999999999999999999999999999999       999999999999999999999999999999


Q ss_pred             ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      ++++||||||+++|++|.+||++++++|||+|+|+|||++.|+.+.|+|.+++.+|+++++++++.++|++||+||+||+
T Consensus       168 ~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~  247 (327)
T 3ohm_A          168 IFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL  247 (327)
T ss_dssp             EEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHH
T ss_pred             eeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM  332 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~  332 (334)
                      ++|+  ..+++.+|||+|+|++.+.++|.+||+++|.+++++..+.+++|+|||+|+.||+.+|..|.+.|++++|++.|
T Consensus       248 ~~ki--~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l~~~~  325 (327)
T 3ohm_A          248 EEKI--MYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYN  325 (327)
T ss_dssp             HHHT--TTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTCC---
T ss_pred             hhhh--ccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhHHhcC
Confidence            9999  88899999999999999999999999999999987766889999999999999999999999999999999998


Q ss_pred             CC
Q psy3651         333 LQ  334 (334)
Q Consensus       333 l~  334 (334)
                      |.
T Consensus       326 l~  327 (327)
T 3ohm_A          326 LV  327 (327)
T ss_dssp             --
T ss_pred             CC
Confidence            73

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=100.00  E-value=5.6e-72  Score=534.77  Aligned_cols=296  Identities=29%  Similarity=0.524  Sum_probs=276.9

Q ss_pred             eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHH
Q psy3651          14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFST   93 (334)
Q Consensus        14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   93 (334)
                      ||.|||..||+++|++.||+  +||.|++++|++|++||+.+      +|++++|.++..+   +...   ....+++++
T Consensus        24 Qmkii~~~gfs~~e~~~~~~--~i~~N~~~~~~~li~~~~~l------~i~~~~~~~~~~~---~~~~---~~~~~~~~~   89 (340)
T 4fid_A           24 QLKILFGGGFPEQERATHKS--SICSNVVTCMRTLIEQSAIL------NHPMKYQPKSKEF---TTED---PVTLPFSPE   89 (340)
T ss_dssp             HHHHHTSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHT------TCCCSCCCCSGGG---SCCS---CCCSSCCTT
T ss_pred             HHHHHhcCCCCHHHHHHHHH--HHHHhHHHHHHHHHHHHHHh------CCCCCChhhHHHH---hhcc---cCCCCCCHH
Confidence            78999999999999999999  99999999999999999999      9999999998766   3332   235689999


Q ss_pred             HHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcc
Q psy3651          94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIP  173 (334)
Q Consensus        94 ~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~  173 (334)
                      ++++|+.||+||+||+||+|++||+|+|++.|||++++||+.       ++|.||.+|+++++.+|+|+.+..+.+++++
T Consensus        90 ~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~l~Ri~~-------~~Y~PT~~Dil~~~~~TiGi~~~~~~~~~v~  162 (340)
T 4fid_A           90 LVGDVEALWADEGIQATYEESAKFQLPDCAKYLFENVKRIAM-------EDYVPTEEDLIHNRTKTTGIHEYDFVVKDIP  162 (340)
T ss_dssp             HHHHHHHHHHSHHHHHHHHTCTTSCCCTTHHHHHHTHHHHSS-------TTCCCCHHHHHHSCCCCCSCEEEEEESSSCE
T ss_pred             HHHHHHHHHcCHHHHHHHHhcccccccchhhhHHHHHHHHhc-------ccCCccccceeecccceeeeEEEEEEeeeee
Confidence            999999999999999999999999999999999999999999       9999999999999999999999999999999


Q ss_pred             eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      +++||||||+++|++|.+||+++++||||+|+|+|||++.|+.+.++|.+++.+|+++++++++.++|++||+||+||++
T Consensus       163 l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~  242 (340)
T 4fid_A          163 FHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE  242 (340)
T ss_dssp             EEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred             eccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH------HhhccCCC-----------CCeEEEEEeeecCchHHHHH
Q psy3651         254 EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF------KAVKRDEK-----------KPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       254 eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F------~~l~~~~~-----------~~i~~~~tsA~d~~nI~~vf  316 (334)
                      +|+  ..++++++||+|+|++ +.++|.+||.++|      .++++...           +.+++|+|||+|+.||+.+|
T Consensus       243 eki--~~~~l~~~fp~y~g~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          243 EKL--TKVPLNTIFPEYTGGD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHH--HHSCGGGTCTTCCCTT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhc--CcchHHHhhhhhcCCC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            999  8899999999999987 7999999999999      77765544           67999999999999999999


Q ss_pred             HHHHHHHHHHhhhhccCC
Q psy3651         317 NAVKNTILHRNLRDLMLQ  334 (334)
Q Consensus       317 ~~v~~~I~~~~l~~~~l~  334 (334)
                      ..|.++|++ +|++.|+.
T Consensus       320 ~~v~~~Il~-~l~~~~~~  336 (340)
T 4fid_A          320 MLAVDVIMK-NMAANGKM  336 (340)
T ss_dssp             HHHHHHHHH-HHHHTTCC
T ss_pred             HHHHHHHHH-HHHHcCCC
Confidence            999999999 99998863

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=100.00  E-value=1.2e-68  Score=515.82  Aligned_cols=302  Identities=35%  Similarity=0.647  Sum_probs=279.6

Q ss_pred             eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHH
Q psy3651          14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFST   93 (334)
Q Consensus        14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   93 (334)
                      ||.|||..||+++|+..||+  +||.|++++|++|++||+.+      +|+++++.++..++.++.+.... .+..++++
T Consensus        51 Qmkii~~~g~~~~e~~~~~~--~i~~N~~~~~~~l~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  121 (353)
T 1cip_A           51 QMKIIHEAGYSEEECKQYKA--VVYSNTIQSIIAIIRAMGRL------KIDFGDAARADDARQLFVLAGAA-EEGFMTAE  121 (353)
T ss_dssp             HHHHHHSCCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHH------TCCCSSTTHHHHHHHHHHHHHHH-TTTCCCHH
T ss_pred             HHHHhhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh------CCCCCCcchHHHHHHHHhhcccc-ccccCCHH
Confidence            78899999999999999999  99999999999999999999      99999999999999888764432 23579999


Q ss_pred             HHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcc
Q psy3651          94 YVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIP  173 (334)
Q Consensus        94 ~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~  173 (334)
                      ++++|+.||+||+||+||.++++|+|+|+++|||++++||+.       ++|.||.+|+++++.||+|+++..+.+++++
T Consensus       122 ~~~~i~~lw~d~~iq~~~~~~~e~~l~dsa~yfl~~~~ri~~-------~~Y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~  194 (353)
T 1cip_A          122 LAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRVKTTGIVETHFTFKDLH  194 (353)
T ss_dssp             HHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHTCCCCCCSEEEEEEEETTEE
T ss_pred             HHHHHHHHHCCHHHHHHHHhhhhcccCccHHHHHHHHHHHhc-------CCCCCCccccccccCceeceEEEEEeeCCee
Confidence            999999999999999999999999999999999999999999       9999999999999999999999999999999


Q ss_pred             eeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         174 FLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       174 ~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      +++||||||+++|++|.+||+++++||||+|+|+||+++.||++.|+|.+++.+|+++++++++.++|+|||+||+||+.
T Consensus       195 l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~  274 (353)
T 1cip_A          195 FKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFE  274 (353)
T ss_dssp             EEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHH
T ss_pred             EEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC-CCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhhcc
Q psy3651         254 EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRDLM  332 (334)
Q Consensus       254 eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~-~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~~~  332 (334)
                      +|+  ..++++++||+|.|. .+.+++.+|+..+|.++.+.. .+.+++|+|||++|.||+++|++|.+.|++.+|++.|
T Consensus       275 ~ki--~~~~l~~~fp~~~g~-~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l~~~~  351 (353)
T 1cip_A          275 EKI--KKSPLTICYPEYAGS-NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCG  351 (353)
T ss_dssp             HHH--TTSCGGGTCTTCCSC-SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-----
T ss_pred             hhc--cccchhhcccccCCC-CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHHHHcC
Confidence            999  789999999999986 578889999999999987642 4789999999999999999999999999999999998


Q ss_pred             CC
Q psy3651         333 LQ  334 (334)
Q Consensus       333 l~  334 (334)
                      |.
T Consensus       352 l~  353 (353)
T 1cip_A          352 LF  353 (353)
T ss_dssp             --
T ss_pred             CC
Confidence            74

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=100.00  E-value=8.4e-68  Score=511.42  Aligned_cols=302  Identities=52%  Similarity=0.894  Sum_probs=272.6

Q ss_pred             eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCc-------C
Q psy3651          14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC-------I   86 (334)
Q Consensus        14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-------~   86 (334)
                      ||.++|..||+++|+..+|+  +|+.|++++|+.|++||+.+      +|++++|.++..++.++.+.....       .
T Consensus        52 q~~i~~~~~~~~~e~~~~~~--~i~~n~~~s~~~il~a~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  123 (362)
T 1zcb_A           52 QMRIIHGQDFDQRAREEFRP--TIYSNVIKGMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVE  123 (362)
T ss_dssp             HHHHHHSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHT------TCCCSSGGGHHHHHHHHTSCSSSHHHHTTCCC
T ss_pred             HHHHHhCCCCCcccHHHHHH--HHHHHHHHHHHHHHHHHHHc------CCCCCCcccHHHHHHHHhhcccccccccccCc
Confidence            57899999999999999999  99999999999999999999      999999999988888887644210       1


Q ss_pred             CCcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEE
Q psy3651          87 DSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFT  166 (334)
Q Consensus        87 ~~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~  166 (334)
                      ...+ ++++++|+.||+||+||+||.|+++|+|+|+++|||++++||+.       ++|.||.+|+++++.+|+|+.+..
T Consensus       124 ~~~~-~~~~~~i~~LW~d~~iq~~~~r~~e~~l~ds~~yfl~~~~ri~~-------~~Y~PT~~Dil~~r~~T~Gi~~~~  195 (362)
T 1zcb_A          124 TRVF-LQYLPAIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGV-------PDYIPSQQDILLARRPTKGIHEYD  195 (362)
T ss_dssp             HHHH-HHHHHHHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHHCCCCCSSEEEEE
T ss_pred             chhH-HHHHHHHHHHHCCHHHHHHHHhcchhhhcccHHHHHHHHHHHhc-------CCCCCChhhhhhccCCccceEEEE
Confidence            1356 89999999999999999999999999999999999999999999       999999999999999999999999


Q ss_pred             EEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         167 IVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       167 ~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      +.++++++++||||||+++|++|.+||+++++||||+|+|+|||+|.||++.|+|.+++.+|+++++++++.++|+|||+
T Consensus       196 ~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~  275 (362)
T 1zcb_A          196 FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFL  275 (362)
T ss_dssp             EEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEE
T ss_pred             eeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC-CCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~-~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ||+||+++|+  ..++++.+||+|+|.+.+.+++.+|+.++|.++.+.. .+.+++|+|||++|+||+++|++|.+.|++
T Consensus       276 NK~DL~~~ki--~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          276 NKTDLLEEKV--QVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             ECHHHHHHHT--TTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EChhhhhhhc--cccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            9999999999  8899999999999986788999999999999987643 467999999999999999999999999999


Q ss_pred             HhhhhccCC
Q psy3651         326 RNLRDLMLQ  334 (334)
Q Consensus       326 ~~l~~~~l~  334 (334)
                      ++|++ ||.
T Consensus       354 ~~l~~-~l~  361 (362)
T 1zcb_A          354 DNLKQ-LML  361 (362)
T ss_dssp             HHHC-----
T ss_pred             HHHHh-hcc
Confidence            99998 863

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=100.00  E-value=3.6e-67  Score=511.72  Aligned_cols=305  Identities=37%  Similarity=0.613  Sum_probs=275.3

Q ss_pred             eeeeeeccCCCcc---------------cchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHh
Q psy3651          14 RACVFHVRLYFSV---------------ECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIF   78 (334)
Q Consensus        14 ~~~~~~~~~~~~~---------------e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~   78 (334)
                      ||.|||..||+++               |+..+|+  +||.|++++|++|++||+.+    ++.|++++|.++..++.++
T Consensus        59 Qmkiih~~gfs~~E~~~~~~~~~~~~~~e~~~~~~--~i~~Ni~~~~~~i~~a~~~l----~~~i~~~~~~~~~~~~~~~  132 (402)
T 1azs_C           59 QMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQ--DIKNNLKEAIETIVAAMSNL----VPPVELANPENQFRVDYIL  132 (402)
T ss_dssp             HHHHHHCCC-------------------CTTHHHH--HHHHHHHHHHHHHHHHHHHS----SSCCCCSSGGGHHHHHHHH
T ss_pred             HHHHHhCCCCChHHhhhhHHHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHhc----CCCcccCCchhHHHHHHHH
Confidence            7899999999986               6778889  99999999999999999999    3338899999998899888


Q ss_pred             cccCCCcCCCcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeee
Q psy3651          79 QFDNNTCIDSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKA  158 (334)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~  158 (334)
                      ......  +..++++++++|+.||+||+||+||.|+++|+|+|+++|||++++||+.       ++|.||.+|+++++.+
T Consensus       133 ~~~~~~--~~~~~~~~~~~i~~lW~d~~iq~~~~r~~e~~l~d~~~yfl~~~~ri~~-------~~Y~PT~~Dil~~r~~  203 (402)
T 1azs_C          133 SVMNVP--DFDFPPEFYEHAKALWEDEGVRACYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLLRCRVL  203 (402)
T ss_dssp             HTTTCS--SCCCCHHHHHHHHHHHHCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTC-------TTCCCCHHHHHHCCCC
T ss_pred             hhcccC--CCCCCHHHHHHHHHHHcCHHHHHHHHhcccceeccchhhHHHHHHHhhc-------cccCCccccccccccc
Confidence            765432  4579999999999999999999999999999999999999999999999       9999999999999999


Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |+|+.+..|.+++++++|||||||+++|++|.+||+++++||||+|+|+|||++.||++.++|.++..||+++++++++.
T Consensus       204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~  283 (402)
T 1azs_C          204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR  283 (402)
T ss_dssp             CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred             eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCcchhhhccccchhhhhCCCCCC------------CCccHHHHHHHHHHHHHhhccC---CCCCeEEEE
Q psy3651         239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG------------DPQDMQAVQTFLLNYFKAVKRD---EKKPLFHHF  303 (334)
Q Consensus       239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g------------~~~~~~~~~~fi~~~F~~l~~~---~~~~i~~~~  303 (334)
                      ++|++||+||+||+.+|+....+++.+|||+|.|            .+.+.+.|..||+++|.++.+.   ..+.+++|+
T Consensus       284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~  363 (402)
T 1azs_C          284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF  363 (402)
T ss_dssp             SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred             CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence            9999999999999998872115689999999985            2235788999999999887543   125799999


Q ss_pred             EeeecCchHHHHHHHHHHHHHHHhhhhccC
Q psy3651         304 TTAVDTENIKIVFNAVKNTILHRNLRDLML  333 (334)
Q Consensus       304 tsA~d~~nI~~vf~~v~~~I~~~~l~~~~l  333 (334)
                      |||+||+||+.+|.+|.+.|++.+|+..||
T Consensus       364 TSA~d~~nV~~vF~~v~~~I~~~~l~~~~~  393 (402)
T 1azs_C          364 TCAVDTENIRRVFNDCRDIIQRMHLRQYEL  393 (402)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEeecCcCHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999886

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=100.00  E-value=3e-64  Score=485.10  Aligned_cols=303  Identities=28%  Similarity=0.454  Sum_probs=266.9

Q ss_pred             eeeeeeccCCCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcC-------CCcchHHHHHHhcccCCCcC
Q psy3651          14 RACVFHVRLYFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQ-------NDMNAIHAEKIFQFDNNTCI   86 (334)
Q Consensus        14 ~~~~~~~~~~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~-------~~~~~~~~~~i~~~~~~~~~   86 (334)
                      +|.++|..||+++|+..+|+  +|+.|++++|++|++||+.+      ++++.       +|+++..+..+....... .
T Consensus        28 q~~~~~~~g~~~~e~~~~~~--~i~~Ni~~~~~~ll~a~~~l------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~   98 (354)
T 2xtz_A           28 QIKLLFQTGFDEGELKSYVP--VIHANVYQTIKLLHDGTKEF------AQNETDSAKYMLSSESIAIGEKLSEIGGRL-D   98 (354)
T ss_dssp             HHHHHHSCCCCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHH------HHHCSSCCTTCCCHHHHHHHHHHHHHHHHC-S
T ss_pred             HHHHHhcCCCCchhHHHHHH--HHHHHHHHHHHHHHHHHHHh------CCCccccccccCChhHHHHHHHHHhccccc-c
Confidence            67899999999999999999  99999999999999999998      55444       456666676665543222 2


Q ss_pred             CCcCcHHHHHHHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEE
Q psy3651          87 DSRLFSTYVDELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFT  166 (334)
Q Consensus        87 ~~~~~~~~~~~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~  166 (334)
                      .+.++++++++|+.||+||+||+||.|++||+|+|+++|||++++||+.       ++|.||.+|+++++.+|+|+.+..
T Consensus        99 ~~~~~~~~~~~i~~LW~D~~vq~~~~r~~e~~l~d~~~yfl~~~~ri~~-------~~Y~PT~~D~~~~r~~T~Gi~e~~  171 (354)
T 2xtz_A           99 YPRLTKDIAEGIETLWKDPAIQETCARGNELQVPDCTKYLMENLKRLSD-------INYIPTKEDVLYARVRTTGVVEIQ  171 (354)
T ss_dssp             SCCCCHHHHHHHHHHTTCHHHHHHHTTGGGTTCCTTHHHHHTSHHHHHS-------TTCCCCHHHHHHCCCCCCSEEEEE
T ss_pred             cccCCHHHHHHHHHHHCCHHHHHHHHhcchhhhhccHHHHHHHHHHHhc-------CCCCCCchheeeecccccceeeEE
Confidence            3578999999999999999999999999999999999999999999999       999999999999999999999999


Q ss_pred             EEe------eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651         167 IVI------SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV  240 (334)
Q Consensus       167 ~~~------~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~  240 (334)
                      |.+      +.+++++||||||+++|++|.+||++++++|||+|+++|||+|.|+.+.++|++++.+|+++++++++.++
T Consensus       172 f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~  251 (354)
T 2xtz_A          172 FSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT  251 (354)
T ss_dssp             ECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred             EEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence            988      45899999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             cEEEEEeCCCcchhhhccccchhhh--hCCCCCCC---CccHHHHHHHHHHHHHhhcc---CC---CCCeEEEEEeeecC
Q psy3651         241 SFILFLNKTDLLAEKLRTSKTSIAE--HFPEFEGD---PQDMQAVQTFLLNYFKAVKR---DE---KKPLFHHFTTAVDT  309 (334)
Q Consensus       241 piiL~lNK~Dl~~eki~~~~~~l~~--~Fp~y~g~---~~~~~~~~~fi~~~F~~l~~---~~---~~~i~~~~tsA~d~  309 (334)
                      |++||+||+||+.+|+  ..++++.  +||+|.+.   +.+.+++.+|+.++|.++.+   .+   .+.+++|+|||++|
T Consensus       252 piiLvgNK~DL~~~k~--~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~  329 (354)
T 2xtz_A          252 SFMLFLNKFDIFEKKV--LDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ  329 (354)
T ss_dssp             EEEEEEECHHHHHHHT--TTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred             eEEEEEECcchhhhhc--ccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence            9999999999999988  6667765  49999742   34678899999999987731   11   25688899999999


Q ss_pred             chHHHHHHHHHHHHHHHhhhhccCC
Q psy3651         310 ENIKIVFNAVKNTILHRNLRDLMLQ  334 (334)
Q Consensus       310 ~nI~~vf~~v~~~I~~~~l~~~~l~  334 (334)
                      +||+++|++|.+.|++++|+..||.
T Consensus       330 ~nV~~vF~~v~~~I~~~~l~~~~l~  354 (354)
T 2xtz_A          330 KLVKKTFKLVDETLRRRNLLEAGLL  354 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             hhHHHHHHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999874

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.81  E-value=2e-19  Score=161.36  Aligned_cols=143  Identities=17%  Similarity=0.170  Sum_probs=99.9

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeE--EEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITE--FTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS  205 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~--~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl  205 (334)
                      +.|++.   +.|.+.|.||.           |++.  ..+.+  ..++++||||+||+.++..|..||++++++|+|+|+
T Consensus        30 i~r~~~---~~f~~~~~~Ti-----------g~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di   95 (216)
T 4dkx_A           30 ITRFMY---DSFDNTYQATI-----------GIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDI   95 (216)
T ss_dssp             HHHHHH---SCCC---------------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEET
T ss_pred             HHHHHh---CCCCCCcCCcc-----------ceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeec
Confidence            345555   55666677655           3332  12222  337789999999999999999999999999999999


Q ss_pred             CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL  285 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~  285 (334)
                      ++.          .++.....|+..+.... ..++|++||+||+||..++.    .              +.+++.+|..
T Consensus        96 ~~~----------~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~----V--------------~~~e~~~~a~  146 (216)
T 4dkx_A           96 TNV----------NSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQ----V--------------SIEEGERKAK  146 (216)
T ss_dssp             TCH----------HHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCC----S--------------CHHHHHHHHH
T ss_pred             chh----------HHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCc----c--------------cHHHHhhHHH
Confidence            998          77888888888876653 36789999999999976532    1              2233333333


Q ss_pred             HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +          .++.+++|||+++.||+++|+.|.+.|.+
T Consensus       147 ~----------~~~~~~e~SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          147 E----------LNVMFIETSAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             H----------HTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred             H----------hCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            2          24678999999999999999999988764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.77  E-value=2.3e-18  Score=144.72  Aligned_cols=134  Identities=22%  Similarity=0.382  Sum_probs=105.1

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.....+..++..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.....
T Consensus        29 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~   98 (164)
T 1r8s_A           29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVNEAREELMRMLAEDE   98 (164)
T ss_dssp             CCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred             cCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchh
Confidence            4567766677777889999999999999999999999999999999999997          778888889999887666


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+ .  ....+.+.                      ........+.+.+++|||+++.||+++|
T Consensus        99 ~~~~piilv~nK~Dl~~~-~--~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           99 LRDAVLLVFANKQDLPNA-M--NAAEITDK----------------------LGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             GTTCEEEEEEECTTSTTC-C--CHHHHHHH----------------------TTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             hcCCeEEEEEECcCCcCC-C--CHHHHHHH----------------------hCcccccCccEEEEEcccCCCcCHHHHH
Confidence            678999999999998653 1  11112111                      1111122356789999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      +++.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.77  E-value=6.4e-18  Score=142.72  Aligned_cols=134  Identities=18%  Similarity=0.296  Sum_probs=107.7

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..++....
T Consensus        36 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~  105 (171)
T 1upt_A           36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR----------DRIGISKSELVAMLEEEE  105 (171)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCC----------TTHHHHHHHHHHHHTCGG
T ss_pred             CCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhchh
Confidence            4577777777888899999999999999999999999999999999999997          788888899999887665


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+.   ....+.+.                      ..........+.+++|||+++.||.++|
T Consensus       106 ~~~~piilv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (171)
T 1upt_A          106 LRKAILVVFANKQDMEQAM---TSSEMANS----------------------LGLPALKDRKWQIFKTSATKGTGLDEAM  160 (171)
T ss_dssp             GTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------HTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hCCCEEEEEEECCCCcCCC---CHHHHHHH----------------------hCchhccCCceEEEECcCCCCcCHHHHH
Confidence            6789999999999986542   11111111                      1112222356789999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      +++.+.+.+
T Consensus       161 ~~l~~~i~~  169 (171)
T 1upt_A          161 EWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.76  E-value=1.9e-18  Score=149.21  Aligned_cols=135  Identities=20%  Similarity=0.325  Sum_probs=106.9

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..||.|+....+.+++..+.+||++||+.++..|..|+++++++|||+|+++.          .++.+...++..++...
T Consensus        44 ~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~  113 (181)
T 1fzq_A           44 ITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR----------KRFEETGQELTELLEEE  113 (181)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCG----------GGHHHHHHHHHHHTTCG
T ss_pred             ccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCH----------HHHHHHHHHHHHHHhCh
Confidence            46788888778888899999999999999999999999999999999999997          77888888888887765


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|++|++||+|+..+.   ....+.+.                      .++.....+.+.+++|||+++.||.++
T Consensus       114 ~~~~~piilv~NK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (181)
T 1fzq_A          114 KLSCVPVLIFANKQDLLTAA---PASEIAEG----------------------LNLHTIRDRVWQIQSCSALTGEGVQDG  168 (181)
T ss_dssp             GGTTCCEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             hhcCCCEEEEEECcCcccCC---CHHHHHHH----------------------hCchhccCCceEEEEccCCCCCCHHHH
Confidence            55789999999999986542   11112111                      122222335678999999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         316 FNAVKNTILH  325 (334)
Q Consensus       316 f~~v~~~I~~  325 (334)
                      |+++.+.+.+
T Consensus       169 ~~~l~~~~~~  178 (181)
T 1fzq_A          169 MNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHHHh
Confidence            9999887754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.76  E-value=8.2e-18  Score=145.34  Aligned_cols=137  Identities=20%  Similarity=0.321  Sum_probs=110.0

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..++....
T Consensus        51 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~  120 (189)
T 2x77_A           51 VPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDR----------DRMGVAKHELYALLDEDE  120 (189)
T ss_dssp             CSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCC----------TTHHHHHHHHHHHHTCST
T ss_pred             CCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhhhh
Confidence            5678887778888899999999999999999999999999999999999997          788888899999888766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+.   ....+.+.                      ........+.+.+++|||+++.||+++|
T Consensus       121 ~~~~piilv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (189)
T 2x77_A          121 LRKSLLLIFANKQDLPDAA---SEAEIAEQ----------------------LGVSSIMNRTWTIVKSSSKTGDGLVEGM  175 (189)
T ss_dssp             TTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cCCCeEEEEEECCCCcCCC---CHHHHHHH----------------------hChhhccCCceEEEEccCCCccCHHHHH
Confidence            6789999999999986531   11112111                      1111223356789999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy3651         317 NAVKNTILHRNL  328 (334)
Q Consensus       317 ~~v~~~I~~~~l  328 (334)
                      +++.+.+.++.+
T Consensus       176 ~~l~~~i~~~~~  187 (189)
T 2x77_A          176 DWLVERLREQGL  187 (189)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHhccc
Confidence            999998876543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.75  E-value=1.5e-17  Score=143.14  Aligned_cols=132  Identities=20%  Similarity=0.327  Sum_probs=105.6

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..+|+|.....+.+++..+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+....
T Consensus        49 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~~~~~~  118 (181)
T 2h17_A           49 TSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR----------ERISVTREELYKMLAHE  118 (181)
T ss_dssp             EECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCT----------TTHHHHHHHHHHHHTCG
T ss_pred             cCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCh
Confidence            45778887778888899999999999999999999999999999999999997          78888889999988765


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|++|++||+|+..+ .  ....+.+.                      ..+.......+.+++|||+++.||+++
T Consensus       119 ~~~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l  173 (181)
T 2h17_A          119 DLRKAGLLIFANKQDVKEC-M--TVAEISQF----------------------LKLTSIKDHQWHIQACCALTGEGLCQG  173 (181)
T ss_dssp             GGTTCEEEEEEECTTSTTC-C--CHHHHHHH----------------------TTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             hhCCCeEEEEEECCCcccC-C--CHHHHHHH----------------------hCcccccCCceEEEEccCCCCcCHHHH
Confidence            4578999999999998653 1  11122221                      122222235678999999999999999


Q ss_pred             HHHHHHH
Q psy3651         316 FNAVKNT  322 (334)
Q Consensus       316 f~~v~~~  322 (334)
                      |+++.+.
T Consensus       174 ~~~l~~~  180 (181)
T 2h17_A          174 LEWMMSR  180 (181)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhh
Confidence            9998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.75  E-value=1e-17  Score=145.31  Aligned_cols=136  Identities=21%  Similarity=0.356  Sum_probs=105.5

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      +|+|.....+...+..+.+||++|++.++..|..|+++++++|||+|+++.          .++.+...++..++.....
T Consensus        49 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~~~~~~~~  118 (199)
T 4bas_A           49 ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH----------LRLCVVKSEIQAMLKHEDI  118 (199)
T ss_dssp             CCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTSHHH
T ss_pred             cccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH----------HHHHHHHHHHHHHHhChhh
Confidence            466666667777889999999999999999999999999999999999997          7788888888888765322


Q ss_pred             -------CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecC
Q psy3651         238 -------RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDT  309 (334)
Q Consensus       238 -------~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~  309 (334)
                             .+.|++||+||+|+..+.   ....+.+.                 +     .+... ....+.+++|||+++
T Consensus       119 ~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~Sa~~g  173 (199)
T 4bas_A          119 RRELPGGGRVPFLFFANKMDAAGAK---TAAELVEI-----------------L-----DLTTLMGDHPFVIFASNGLKG  173 (199)
T ss_dssp             HSBCTTSCBCCEEEEEECTTSTTCC---CHHHHHHH-----------------H-----THHHHHTTSCEEEEECBTTTT
T ss_pred             hhcccccCCCCEEEEEECcCCCCCC---CHHHHHHH-----------------h-----cchhhccCCeeEEEEeeCCCc
Confidence                   278999999999986642   11122211                 1     11111 235688999999999


Q ss_pred             chHHHHHHHHHHHHHHHhh
Q psy3651         310 ENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       310 ~nI~~vf~~v~~~I~~~~l  328 (334)
                      .||.++|+++.+.+.+..-
T Consensus       174 ~gv~~l~~~l~~~~~~~~~  192 (199)
T 4bas_A          174 TGVHEGFSWLQETASRQSG  192 (199)
T ss_dssp             BTHHHHHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHHHHHHhc
Confidence            9999999999999887643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.74  E-value=1.5e-17  Score=142.37  Aligned_cols=137  Identities=19%  Similarity=0.322  Sum_probs=105.9

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+....
T Consensus        46 ~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~  115 (183)
T 1moz_A           46 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK----------DRMSTASKELHLMLQEE  115 (183)
T ss_dssp             ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCT----------TTHHHHHHHHHHHTTSS
T ss_pred             cCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHcCh
Confidence            45678877778888889999999999999999999999999999999999997          78888889999888765


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|++|++||+|+..+ .  ....+.+.                      ..........+.+++|||+++.||+++
T Consensus       116 ~~~~~piilv~nK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A          116 ELQDAALLVFANKQDQPGA-L--SASEVSKE----------------------LNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             TTSSCEEEEEEECTTSTTC-C--CHHHHHHH----------------------TTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             hhCCCeEEEEEECCCCCCC-C--CHHHHHHH----------------------hCcccccCCceEEEEccCCCCcCHHHH
Confidence            5678999999999998653 1  22222221                      111112235678999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy3651         316 FNAVKNTILHRN  327 (334)
Q Consensus       316 f~~v~~~I~~~~  327 (334)
                      |+++.+.+.++.
T Consensus       171 ~~~l~~~~~~~q  182 (183)
T 1moz_A          171 LDWLIDVIKEEQ  182 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            999999887653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.74  E-value=1.1e-17  Score=144.01  Aligned_cols=135  Identities=21%  Similarity=0.314  Sum_probs=107.6

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.....+.+++..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.....
T Consensus        47 ~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~  116 (186)
T 1ksh_A           47 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------QRMQDCQRELQSLLVEER  116 (186)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred             cccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHhChh
Confidence            4566777777777889999999999999999999999999999999999997          778888889999888765


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+.   ....+.+.                      .++.......+.+++|||+++.||+++|
T Consensus       117 ~~~~piilv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  171 (186)
T 1ksh_A          117 LAGATLLIFANKQDLPGAL---SCNAIQEA----------------------LELDSIRSHHWRIQGCSAVTGEDLLPGI  171 (186)
T ss_dssp             GTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cCCCcEEEEEeCccCCCCC---CHHHHHHH----------------------hChhhccCCceEEEEeeCCCCCCHHHHH
Confidence            6789999999999986542   11112211                      1222222356789999999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         317 NAVKNTILHR  326 (334)
Q Consensus       317 ~~v~~~I~~~  326 (334)
                      +++.+.+.++
T Consensus       172 ~~l~~~i~~~  181 (186)
T 1ksh_A          172 DWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=2.1e-17  Score=142.70  Aligned_cols=133  Identities=20%  Similarity=0.327  Sum_probs=102.9

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....+.+++..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.....
T Consensus        45 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~  114 (187)
T 1zj6_A           45 SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR----------ERISVTREELYKMLAHED  114 (187)
T ss_dssp             ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCT----------TTHHHHHHHHHHHHTSGG
T ss_pred             cCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH----------HHHHHHHHHHHHHHhchh
Confidence            5678877778888899999999999999999999999999999999999997          788888899999887655


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+ .  ....+.+.                      ..........+.+++|||+++.||+++|
T Consensus       115 ~~~~piilv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  169 (187)
T 1zj6_A          115 LRKAGLLIFANKQDVKEC-M--TVAEISQF----------------------LKLTSIKDHQWHIQACCALTGEGLCQGL  169 (187)
T ss_dssp             GTTCEEEEEEECTTSTTC-C--CHHHHHHH----------------------HTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             hCCCeEEEEEECCCCcCC-C--CHHHHHHH----------------------hChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence            578999999999998653 1  11111111                      1221122356789999999999999999


Q ss_pred             HHHHHHHH
Q psy3651         317 NAVKNTIL  324 (334)
Q Consensus       317 ~~v~~~I~  324 (334)
                      +++.+.+.
T Consensus       170 ~~l~~~~~  177 (187)
T 1zj6_A          170 EWMMSRLK  177 (187)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.73  E-value=1.3e-17  Score=145.39  Aligned_cols=133  Identities=20%  Similarity=0.351  Sum_probs=102.2

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....+..++..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.....
T Consensus        58 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~l~~~~~~~~  127 (192)
T 2b6h_A           58 IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVQESADELQKMLQEDE  127 (192)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred             CCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHhcccc
Confidence            6788888778888889999999999999999999999999999999999997          778888889998887666


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+.   ....+.+.                      ........+.+.+++|||+++.||+++|
T Consensus       128 ~~~~piilv~NK~Dl~~~~---~~~~i~~~----------------------~~~~~~~~~~~~~~~~SA~~g~gi~~l~  182 (192)
T 2b6h_A          128 LRDAVLLVFANKQDMPNAM---PVSELTDK----------------------LGLQHLRSRTWYVQATCATQGTGLYDGL  182 (192)
T ss_dssp             GTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             cCCCeEEEEEECCCCCCCC---CHHHHHHH----------------------hCcccccCCceEEEECcCCCcCCHHHHH
Confidence            6789999999999986531   11112211                      1111122356789999999999999999


Q ss_pred             HHHHHHHH
Q psy3651         317 NAVKNTIL  324 (334)
Q Consensus       317 ~~v~~~I~  324 (334)
                      +++.+.+.
T Consensus       183 ~~l~~~i~  190 (192)
T 2b6h_A          183 DWLSHELS  190 (192)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            99988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.73  E-value=1.2e-17  Score=146.41  Aligned_cols=142  Identities=22%  Similarity=0.351  Sum_probs=99.3

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|.....+.+++..+.+||++||+.++..|..|+++++++|+|+|+++.          .++.+...++..+......
T Consensus        55 ~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~~~~~~~~  124 (198)
T 1f6b_A           55 PTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADH----------ERLLESKEELDSLMTDETI  124 (198)
T ss_dssp             CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGGG
T ss_pred             CCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCccc
Confidence            455555667777889999999999999999999999999999999999997          7888888999998876555


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||+|+..+ +  ....+.+++..+.-....  .        -..+.....+.+.+++|||++++||+++|+
T Consensus       125 ~~~piilv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~  191 (198)
T 1f6b_A          125 ANVPILILGNKIDRPEA-I--SEERLREMFGLYGQTTGK--G--------SVSLKELNARPLEVFMCSVLKRQGYGEGFR  191 (198)
T ss_dssp             TTSCEEEEEECTTSTTC-C--CHHHHHHHHTCTTTCCCS--S--------CCCTTTCCSCCEEEEECBTTTTBSHHHHHH
T ss_pred             CCCcEEEEEECCCcccc-C--CHHHHHHHhCcccccccc--c--------ccccccccCceEEEEEEECCCCCCHHHHHH
Confidence            78999999999998652 2  222333322111000000  0        000100112457899999999999999999


Q ss_pred             HHHHH
Q psy3651         318 AVKNT  322 (334)
Q Consensus       318 ~v~~~  322 (334)
                      ++.+.
T Consensus       192 ~l~~~  196 (198)
T 1f6b_A          192 WMAQY  196 (198)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            98754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.73  E-value=3.2e-17  Score=142.73  Aligned_cols=138  Identities=23%  Similarity=0.374  Sum_probs=104.8

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|.....+.+++.++.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.....
T Consensus        52 ~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~  121 (190)
T 1m2o_B           52 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP----------ERFDEARVELDALFNIAE  121 (190)
T ss_dssp             CCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred             ccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCh----------HHHHHHHHHHHHHHcchh
Confidence            3466666677788889999999999999999999999999999999999997          788888889999887655


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+ +  ....+.+.+....-..   +.       .   +  ...+.+.+++|||+++.||.++|
T Consensus       122 ~~~~piilv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~---~~-------~---~--~~~~~~~~~~~Sa~~g~gi~~l~  183 (190)
T 1m2o_B          122 LKDVPFVILGNKIDAPNA-V--SEAELRSALGLLNTTG---SQ-------R---I--EGQRPVEVFMCSVVMRNGYLEAF  183 (190)
T ss_dssp             GTTCCEEEEEECTTSTTC-C--CHHHHHHHTTCSSCCC----------------C--CSSCCEEEEECBTTTTBSHHHHH
T ss_pred             hcCCCEEEEEECCCCcCC-C--CHHHHHHHhCCccccc---cc-------c---c--cccceEEEEEeECCcCCCHHHHH
Confidence            578999999999998652 3  3333433322111000   00       0   0  11356789999999999999999


Q ss_pred             HHHHHH
Q psy3651         317 NAVKNT  322 (334)
Q Consensus       317 ~~v~~~  322 (334)
                      +++.+.
T Consensus       184 ~~l~~~  189 (190)
T 1m2o_B          184 QWLSQY  189 (190)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            998753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.72  E-value=2.6e-17  Score=142.60  Aligned_cols=133  Identities=17%  Similarity=0.329  Sum_probs=103.2

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      +|+|.....+..++..+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+......
T Consensus        53 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~----------~s~~~~~~~~~~~~~~~~~  122 (188)
T 1zd9_A           53 PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ----------EKIEASKNELHNLLDKPQL  122 (188)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGGG
T ss_pred             CCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCH----------HHHHHHHHHHHHHHhCccc
Confidence            456666666777789999999999999999999999999999999999997          7888888899988876555


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||+|+..+.   ....+.+.                      ..+.......+.+++|||+++.||.++|+
T Consensus       123 ~~~piilv~NK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~SA~~g~gv~~l~~  177 (188)
T 1zd9_A          123 QGIPVLVLGNKRDLPGAL---DEKELIEK----------------------MNLSAIQDREICCYSISCKEKDNIDITLQ  177 (188)
T ss_dssp             TTCCEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             CCCCEEEEEECCCCccCC---CHHHHHHH----------------------hChhhhccCCeeEEEEECCCCCCHHHHHH
Confidence            789999999999986531   11111111                      11111223567889999999999999999


Q ss_pred             HHHHHHHH
Q psy3651         318 AVKNTILH  325 (334)
Q Consensus       318 ~v~~~I~~  325 (334)
                      ++.+.+.+
T Consensus       178 ~l~~~~~~  185 (188)
T 1zd9_A          178 WLIQHSKS  185 (188)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHh
Confidence            99886643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.72  E-value=6.4e-18  Score=145.90  Aligned_cols=153  Identities=14%  Similarity=0.133  Sum_probs=105.4

Q ss_pred             CCCCCCCCCcccccceeeeecceeEEEEEe-----eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhc
Q psy3651         140 PLFQDYIPSNKDILHARKATKGITEFTIVI-----SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVE  214 (334)
Q Consensus       140 ~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~-----~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~e  214 (334)
                      .|.+.|.|+...+.....||+|++.....+     ..+.+++||++||+.++..|..++++++++|||+|+++..  ..+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~--~~~  114 (198)
T 3t1o_A           37 KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNR--LRA  114 (198)
T ss_dssp             TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGG--HHH
T ss_pred             hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcch--hhH
Confidence            444677776655545567788877544322     3478999999999999999999999999999999999531  110


Q ss_pred             ccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC
Q psy3651         215 DRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD  294 (334)
Q Consensus       215 d~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~  294 (334)
                      +  ...+.+...|+..+  .....+.|++||+||+|+..+ +  ....+.++                 .          
T Consensus       115 ~--~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~-~--~~~~~~~~-----------------~----------  160 (198)
T 3t1o_A          115 N--AESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDA-L--PVEMVRAV-----------------V----------  160 (198)
T ss_dssp             H--HHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTC-C--CHHHHHHH-----------------H----------
T ss_pred             h--HHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccc-c--CHHHHHHH-----------------H----------
Confidence            0  12333334444443  123478899999999998654 2  22112111                 1          


Q ss_pred             CCCCe-EEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         295 EKKPL-FHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       295 ~~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      ...++ .+++|||+++.||+++|+++.+.++++..
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            12345 78999999999999999999999987643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.72  E-value=4.7e-17  Score=140.83  Aligned_cols=133  Identities=21%  Similarity=0.370  Sum_probs=104.8

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .+|+|+....+.+++..+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+.....
T Consensus        52 ~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~  121 (190)
T 2h57_A           52 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR----------LRMVVAKEELDTLLNHPD  121 (190)
T ss_dssp             CCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCH----------HHHHHHHHHHHHHHHSTT
T ss_pred             CCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHhChh
Confidence            3566777777788889999999999999999999999999999999999997          678888888988888765


Q ss_pred             C--CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         237 F--RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       237 ~--~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      .  .+.|++||+||+|+..+ .  ....+.+                 +     ..+.......+.+++|||+++.||.+
T Consensus       122 ~~~~~~piilv~nK~Dl~~~-~--~~~~~~~-----------------~-----~~~~~~~~~~~~~~~~Sa~~~~gi~~  176 (190)
T 2h57_A          122 IKHRRIPILFFANKMDLRDA-V--TSVKVSQ-----------------L-----LCLENIKDKPWHICASDAIKGEGLQE  176 (190)
T ss_dssp             TTTSCCCEEEEEECTTSTTC-C--CHHHHHH-----------------H-----HTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             hccCCCeEEEEEeCcCcccC-C--CHHHHHH-----------------H-----hChhhccCCceEEEEccCCCCcCHHH
Confidence            5  68999999999998653 1  1111111                 1     22222223567899999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         315 VFNAVKNTIL  324 (334)
Q Consensus       315 vf~~v~~~I~  324 (334)
                      +|+++.+.+.
T Consensus       177 l~~~l~~~i~  186 (190)
T 2h57_A          177 GVDWLQDQIQ  186 (190)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.68  E-value=5.1e-16  Score=132.74  Aligned_cols=141  Identities=13%  Similarity=0.134  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||..+..          ...+.++  .+.+.+||++|++.++..|..++++++++|+|+|+++.        
T Consensus        29 ~~~~~~~~~t~~~~~----------~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~--------   90 (181)
T 3t5g_A           29 GQFVDSYDPTIENTF----------TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI--------   90 (181)
T ss_dssp             SSCCSCCCTTCCEEE----------EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCH--------
T ss_pred             CCCCCCCCCCccccE----------EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCH--------
Confidence            445577777664332          1222333  36789999999999999999999999999999999997        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .++.....++..+.......+.|++|++||+|+..++.    .              ..+.+.++...          
T Consensus        91 --~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----~--------------~~~~~~~~~~~----------  140 (181)
T 3t5g_A           91 --KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----I--------------SYEEGKALAES----------  140 (181)
T ss_dssp             --HHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCC----S--------------CHHHHHHHHHH----------
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcce----e--------------cHHHHHHHHHH----------
Confidence              67777777888887765556789999999999865432    0              11222222211          


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ..+.++++||+++.||.++|+++.+.+.+.+
T Consensus       141 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          141 WNAAFLESSAKENQTAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             TTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred             hCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            2457899999999999999999999887643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.68  E-value=4.4e-16  Score=130.67  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=100.4

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.+.+.|.||..+...          ..+.+  ++..+.+||++|++.++..|..++++++++|+|+|+++.        
T Consensus        26 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--------   87 (167)
T 1c1y_A           26 GIFVEKYDPTIEDSYR----------KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ--------   87 (167)
T ss_dssp             CCCCCSCCCCSEEEEE----------EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH--------
T ss_pred             CCCCCCCCCCccceEE----------EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCH--------
Confidence            4455677776643321          11222  346789999999999999999999999999999999997        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .++.+...++..+.......+.|++|++||+|+..++.  .                ..+.+..+...         .
T Consensus        88 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~---------~  138 (167)
T 1c1y_A           88 --STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--V----------------GKEQGQNLARQ---------W  138 (167)
T ss_dssp             --HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC--S----------------CHHHHHHHHHH---------T
T ss_pred             --HHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccccc--C----------------CHHHHHHHHHH---------c
Confidence              56666667777777654456899999999999976432  0                11222212111         1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ..+.+++|||+++.||+++|+++.+.+.
T Consensus       139 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          139 CNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             cCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence            2467899999999999999999988763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.67  E-value=7.2e-16  Score=134.81  Aligned_cols=120  Identities=14%  Similarity=0.132  Sum_probs=91.4

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .++.+.+||++|++.++..|..++++++++|+|+|+++.          .++.....++..+.......+.|++|++||+
T Consensus        70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  139 (201)
T 3oes_A           70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSL----------HSFQVIESLYQKLHEGHGKTRVPVVLVGNKA  139 (201)
T ss_dssp             -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCH----------HHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred             EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence            457789999999999999999999999999999999997          6777777888888776555678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      |+..++.  .                ..+.+..+...          ..+.+++|||+++.||+++|+++.+.+.+..
T Consensus       140 Dl~~~~~--v----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          140 DLSPERE--V----------------QAVEGKKLAES----------WGATFMESSARENQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             TCGGGCC--S----------------CHHHHHHHHHH----------HTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred             cCccccc--c----------------CHHHHHHHHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            9876532  1                11122222221          2357899999999999999999999988654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.67  E-value=5.9e-16  Score=135.82  Aligned_cols=131  Identities=18%  Similarity=0.208  Sum_probs=95.2

Q ss_pred             eeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         158 ATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       158 ~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +|+|.+  ...+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+..
T Consensus        60 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~  129 (201)
T 2hup_A           60 STIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKR----------SSFLSVPHWIEDVRK  129 (201)
T ss_dssp             -----CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBH----------HHHHTHHHHHHHHHH
T ss_pred             CCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHH
Confidence            444533  33444444  7899999999999999999999999999999999987          566666677777665


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENI  312 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI  312 (334)
                      .. ..+.|++||+||+|+..++.    .              ..+.+.++...          .++ .+++|||+++.||
T Consensus       130 ~~-~~~~piilv~NK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~~SA~~g~gi  180 (201)
T 2hup_A          130 YA-GSNIVQLLIGNKSDLSELRE----V--------------SLAEAQSLAEH----------YDILCAIETSAKDSSNV  180 (201)
T ss_dssp             HS-CTTCEEEEEEECTTCGGGCC----S--------------CHHHHHHHHHH----------TTCSEEEECBTTTTBSH
T ss_pred             hc-CCCCCEEEEEECCccccccc----c--------------CHHHHHHHHHH----------cCCCEEEEEeCCCCCCH
Confidence            43 36789999999999976421    0              11222222211          235 7899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy3651         313 KIVFNAVKNTILHRN  327 (334)
Q Consensus       313 ~~vf~~v~~~I~~~~  327 (334)
                      .++|+++.+.+.++.
T Consensus       181 ~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          181 EEAFLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.67  E-value=1.6e-15  Score=128.89  Aligned_cols=127  Identities=17%  Similarity=0.208  Sum_probs=96.5

Q ss_pred             EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCc
Q psy3651         164 EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVS  241 (334)
Q Consensus       164 ~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~p  241 (334)
                      ...+.+.+  +.+.+||++|++.++..|..++.+++++|+|+|+++.          .++.+...|+..+...  ..+.|
T Consensus        48 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p  115 (181)
T 3tw8_B           48 IRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA----------ESFVNVKRWLHEINQN--CDDVC  115 (181)
T ss_dssp             EEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH--CTTSE
T ss_pred             EEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCC
Confidence            34445555  7899999999999999999999999999999999996          5666666677776553  35789


Q ss_pred             EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         242 FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       242 iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      ++||+||+|+..++.  .                ..+.+..+...          ..+.+++|||+++.||.++|+++.+
T Consensus       116 ~ilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (181)
T 3tw8_B          116 RILVGNKNDDPERKV--V----------------ETEDAYKFAGQ----------MGIQLFETSAKENVNVEEMFNCITE  167 (181)
T ss_dssp             EEEEEECTTCGGGCC--S----------------CHHHHHHHHHH----------HTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEEEEECCCCchhcc--c----------------CHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999876532  1                11122212211          1346889999999999999999999


Q ss_pred             HHHHHhhhh
Q psy3651         322 TILHRNLRD  330 (334)
Q Consensus       322 ~I~~~~l~~  330 (334)
                      .+.+...+.
T Consensus       168 ~~~~~~~~~  176 (181)
T 3tw8_B          168 LVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhhhh
Confidence            998765543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.67  E-value=8.4e-16  Score=131.59  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.......+.|++|++||+|
T Consensus        65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D  134 (183)
T 3kkq_A           65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK----------ASFEHVDRFHQLILRVKDRESFPMILVANKVD  134 (183)
T ss_dssp             EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence            35678899999999999999999999999999999997          56666667777776655557889999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee-cCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV-DTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~-d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++.    .              ..+.+..+....          ++.+++|||+ ++.||.++|+++.+.+.+
T Consensus       135 l~~~~~----v--------------~~~~~~~~~~~~----------~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          135 LMHLRK----V--------------TRDQGKEMATKY----------NIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             CSTTCC----S--------------CHHHHHHHHHHH----------TCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             chhccC----c--------------CHHHHHHHHHHh----------CCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            876421    0              112222222211          2568999999 999999999999998865

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.67  E-value=7.1e-16  Score=132.05  Aligned_cols=134  Identities=18%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             eeeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         157 KATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       157 ~~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      .||+|.+  ...+.+++  ..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+.
T Consensus        38 ~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~  107 (183)
T 2fu5_C           38 ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIRNWIRNIE  107 (183)
T ss_dssp             HHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHH
T ss_pred             CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHH
Confidence            3455544  33445544  7899999999999999999999999999999999997          56666667777766


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .. ...+.|++|++||+|+..++.                  ...+.+.++...          .++.+++|||+++.||
T Consensus       108 ~~-~~~~~piilv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i  158 (183)
T 2fu5_C          108 EH-ASADVEKMILGNKCDVNDKRQ------------------VSKERGEKLALD----------YGIKFMETSAKANINV  158 (183)
T ss_dssp             HH-SCTTCEEEEEEEC--CCSCCC------------------SCHHHHHHHHHH----------HTCEEEECCC---CCH
T ss_pred             Hh-cCCCCCEEEEEECccCCccCc------------------CCHHHHHHHHHH----------cCCeEEEEeCCCCCCH
Confidence            54 235789999999999865421                  012222223221          2367899999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q psy3651         313 KIVFNAVKNTILHRNLR  329 (334)
Q Consensus       313 ~~vf~~v~~~I~~~~l~  329 (334)
                      .++|.++.+.+.++..+
T Consensus       159 ~~l~~~l~~~i~~~~~~  175 (183)
T 2fu5_C          159 ENAFFTLARDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.67  E-value=5.4e-16  Score=129.82  Aligned_cols=117  Identities=20%  Similarity=0.183  Sum_probs=89.4

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.....++..+.......+.|++|++||+|
T Consensus        51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  120 (168)
T 1u8z_A           51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDENVPFLLVGNKSD  120 (168)
T ss_dssp             EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGG
T ss_pred             EEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence            36789999999999999999999999999999999997          66777777778877765556899999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++-    .              ..+.+..+...          .++.++++||+++.||.++|+++.+.+.+
T Consensus       121 l~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          121 LEDKRQ----V--------------SVEEAKNRADQ----------WNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             GGGGCC----S--------------CHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ccccCc----c--------------CHHHHHHHHHH----------cCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            865421    1              11222222221          23578999999999999999999988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.66  E-value=6.7e-16  Score=131.92  Aligned_cols=120  Identities=20%  Similarity=0.207  Sum_probs=94.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++|++.++..|..++.+++++|+|+|+++.          .++.....++..+.......+.|++|++||+|
T Consensus        65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  134 (187)
T 2a9k_A           65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDENVPFLLVGNKSD  134 (187)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCCTTCCEEEEEECGG
T ss_pred             EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            36789999999999999999999999999999999997          66777777888877765556899999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      +..++.    .              ..+.+.++..          ...+.+++|||+++.||.++|+++.+.+.++..
T Consensus       135 l~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  184 (187)
T 2a9k_A          135 LEDKRQ----V--------------SVEEAKNRAE----------QWNVNYVETSAKTRANVDKVFFDLMREIRARKM  184 (187)
T ss_dssp             GGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             ccccCc----c--------------CHHHHHHHHH----------HcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhc
Confidence            866421    1              1122222221          124678999999999999999999999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.66  E-value=1e-15  Score=135.83  Aligned_cols=152  Identities=13%  Similarity=0.145  Sum_probs=100.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|...|.||..+....        ...+....+.+.+||++||+.++..|..++++++++|+|+|+++.          
T Consensus        50 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------  111 (214)
T 3q3j_B           50 DCYPETYVPTVFENYTA--------CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRP----------  111 (214)
T ss_dssp             SCCCSSCCCCSEEEEEE--------EEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCT----------
T ss_pred             CCCCCCcCCeeeeeEEE--------EEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCH----------
Confidence            45556777776543211        011122347899999999999999999999999999999999997          


Q ss_pred             ccHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESRN-IFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl~-lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++.+++. |+..+...  ..++|++|++||+|+..+.-  ....+..    ........+.+..+....          
T Consensus       112 ~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~----------  173 (214)
T 3q3j_B          112 ETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLS--TLMELSH----QKQAPISYEQGCAIAKQL----------  173 (214)
T ss_dssp             HHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHH--HHHHHHH----TTCCCCCHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchh--hhhhhcc----cccCccCHHHHHHHHHHc----------
Confidence            67777544 44444433  36889999999999976421  1101110    001112233333333221          


Q ss_pred             Ce-EEEEEeeecCch-HHHHHHHHHHHHHHH
Q psy3651         298 PL-FHHFTTAVDTEN-IKIVFNAVKNTILHR  326 (334)
Q Consensus       298 ~i-~~~~tsA~d~~n-I~~vf~~v~~~I~~~  326 (334)
                      ++ .+++|||+++.| |.++|+++.+.+++.
T Consensus       174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             TCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence            34 789999999998 999999999988754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.66  E-value=1.4e-15  Score=132.51  Aligned_cols=118  Identities=20%  Similarity=0.198  Sum_probs=94.0

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+.+||++|++.++..|..++.+++++|+|+|+++.          .++.....|+..+.......+.|++|++||+|+
T Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (206)
T 2bov_A           62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM----------ESFAATADFREQILRVKEDENVPFLLVGNKSDL  131 (206)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred             EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence            5789999999999999999999999999999999997          667777778888877654568999999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ..++-    .              ..+.+..+...          ..+.+++|||+++.||.++|+++.+.+.+..
T Consensus       132 ~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          132 EDKRQ----V--------------SVEEAKNRAEQ----------WNVNYVETSAKTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             GGGCC----S--------------CHHHHHHHHHH----------HTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccccc----c--------------cHHHHHHHHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence            66421    1              12222223221          2357899999999999999999999998754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.66  E-value=1.3e-15  Score=130.84  Aligned_cols=120  Identities=18%  Similarity=0.174  Sum_probs=94.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+.......+.|++|++||+|
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  138 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNE----------QSFLNVRNWISQLQMHAYSENPDIVLCGNKSD  138 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSSSSSCCEEEEEECTT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence            35899999999999999999999999999999999997          56666677777777765557899999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      +..++.  .                ..+.+.++...          .++.+++|||+++.||+++|+++.+.+.++.-
T Consensus       139 l~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          139 LEDQRA--V----------------KEEEARELAEK----------YGIPYFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             CGGGCC--S----------------CHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccc--c----------------CHHHHHHHHHH----------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            966421  0                11222222221          12568999999999999999999999987643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.66  E-value=2.2e-15  Score=130.55  Aligned_cols=124  Identities=17%  Similarity=0.190  Sum_probs=94.0

Q ss_pred             EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.++  .+.+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+.... ..+.|++
T Consensus        62 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~l~~i~~~~-~~~~pii  130 (191)
T 2a5j_A           62 MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLTSWLEDARQHS-SSNMVIM  130 (191)
T ss_dssp             EEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEEE
T ss_pred             EEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCCEE
Confidence            34443  36899999999999999999999999999999999996          55666666776665542 3578999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |++||+|+..++.    .              ..+.+..+...          ..+.+++|||+++.||+++|+++.+.+
T Consensus       131 lv~nK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (191)
T 2a5j_A          131 LIGNKSDLESRRD----V--------------KREEGEAFARE----------HGLIFMETSAKTACNVEEAFINTAKEI  182 (191)
T ss_dssp             EEEECTTCGGGCC----S--------------CHHHHHHHHHH----------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEECcccCCccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999965421    0              11222222221          235789999999999999999999999


Q ss_pred             HHHhh
Q psy3651         324 LHRNL  328 (334)
Q Consensus       324 ~~~~l  328 (334)
                      .++..
T Consensus       183 ~~~~~  187 (191)
T 2a5j_A          183 YRKIQ  187 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.66  E-value=1.1e-15  Score=129.97  Aligned_cols=118  Identities=14%  Similarity=0.158  Sum_probs=93.5

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..++......+.|++|++||+|+
T Consensus        57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  126 (181)
T 2fn4_A           57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR----------QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL  126 (181)
T ss_dssp             EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred             EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            6788999999999999999999999999999999997          677777788888876655578899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ..++-      +            ..+.+..+..          ...+.+++|||+++.||.++|+++.+.+.+..
T Consensus       127 ~~~~~------v------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          127 ESQRQ------V------------PRSEASAFGA----------SHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             GGGCC------S------------CHHHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             ccccc------c------------CHHHHHHHHH----------HcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            66421      0            0111211111          13467899999999999999999999987654

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.66  E-value=1e-15  Score=130.29  Aligned_cols=132  Identities=17%  Similarity=0.236  Sum_probs=85.4

Q ss_pred             eecceeEE--EEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         158 ATKGITEF--TIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       158 ~T~Gi~~~--~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +|+|.+..  .+.+.  .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+..
T Consensus        42 ~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~  111 (180)
T 2g6b_A           42 STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK----------ASFDNIQAWLTEIHE  111 (180)
T ss_dssp             CCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCH----------HHHHTHHHHHHHHHH
T ss_pred             CceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHH
Confidence            45555432  23333  36899999999999999999999999999999999996          445555556666554


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .. ..+.|++|++||+|+..++.  .                ..+.+..+...          ..+.+++|||+++.||+
T Consensus       112 ~~-~~~~piilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~  162 (180)
T 2g6b_A          112 YA-QHDVALMLLGNKVDSAHERV--V----------------KREDGEKLAKE----------YGLPFMETSAKTGLNVD  162 (180)
T ss_dssp             HS-CTTCEEEEEEECCSTTSCCC--S----------------CHHHHHHHHHH----------HTCCEEECCTTTCTTHH
T ss_pred             hC-CCCCcEEEEEECcccCcccc--c----------------CHHHHHHHHHH----------cCCeEEEEeCCCCCCHH
Confidence            32 26789999999999875421  0                11122222211          13568999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy3651         314 IVFNAVKNTILHRNL  328 (334)
Q Consensus       314 ~vf~~v~~~I~~~~l  328 (334)
                      ++|+++.+.+.+++.
T Consensus       163 ~l~~~l~~~~~~~~~  177 (180)
T 2g6b_A          163 LAFTAIAKELKRRSM  177 (180)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998876544

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.66  E-value=6.7e-17  Score=153.20  Aligned_cols=137  Identities=13%  Similarity=0.165  Sum_probs=92.8

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccc---cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRR---KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~---kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ..||+|+....+. ..+++++||||||+++++   .|.+||++++++|||+|+++           . +.+++.+|..++
T Consensus        31 ~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd-----------~-~~~~~~~l~~~l   97 (331)
T 3r7w_B           31 LESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD-----------E-YINAITNLAMII   97 (331)
T ss_dssp             CCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSS-----------C-TTHHHHHHHHHH
T ss_pred             ecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCc-----------h-HHHHHHHHHHHH
Confidence            4678888876653 458999999999999975   46899999999999999998           2 445555555544


Q ss_pred             hh--cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC--CCCeEEEEEeeec
Q psy3651         233 NN--VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE--KKPLFHHFTTAVD  308 (334)
Q Consensus       233 ~~--~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~--~~~i~~~~tsA~d  308 (334)
                      ..  ...+++|++|++||+||..+.-  +....++.         ..+.+        .++....  ..++.+++|||+|
T Consensus        98 ~~~~~~~~~ipillvgNK~DL~~~~~--R~~~~R~V---------~~~~~--------~~la~~~~~~~~i~f~eTSAkd  158 (331)
T 3r7w_B           98 EYAYKVNPSINIEVLIHKVDGLSEDF--KVDAQRDI---------MQRTG--------EELLELGLDGVQVSFYLTSIFD  158 (331)
T ss_dssp             HHHHHHCTTCEEEEECCCCCSSCSHH--HHHHHHHH---------HHHHH--------HTTSSSSCSCCCEEEECCCSSS
T ss_pred             HHHhhcCCCCcEEEEEECcccCchhh--hhhHHHHh---------hHHHH--------HHHHhhcccccCceEEEeccCC
Confidence            31  1246799999999999965311  00000000         00000        1222211  2468999999998


Q ss_pred             CchHHHHHHHHHHHHHH
Q psy3651         309 TENIKIVFNAVKNTILH  325 (334)
Q Consensus       309 ~~nI~~vf~~v~~~I~~  325 (334)
                       .||.++|..+...|+.
T Consensus       159 -~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          159 -HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             -SHHHHHHHHHHTTSST
T ss_pred             -CcHHHHHHHHHHHHHh
Confidence             5999999999886653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.66  E-value=3.3e-15  Score=129.07  Aligned_cols=118  Identities=18%  Similarity=0.205  Sum_probs=90.0

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +...+.+||++|++.++..|..++++++++|||+|+++.          .++.....|+..+... ...+.|++|++||+
T Consensus        69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~nK~  137 (189)
T 2gf9_A           69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQ----------ESFAAVQDWATQIKTY-SWDNAQVILVGNKC  137 (189)
T ss_dssp             EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred             eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECc
Confidence            357899999999999999999999999999999999986          4555555666665543 24678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..++.  .                ..+.+.++...          .++.+++|||+++.||+++|+++.+.+.++
T Consensus       138 Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  186 (189)
T 2gf9_A          138 DLEDERV--V----------------PAEDGRRLADD----------LGFEFFEASAKENINVKQVFERLVDVICEK  186 (189)
T ss_dssp             TCGGGCC--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccC--C----------------CHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            9966431  0                11222222221          135789999999999999999999988764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=2.6e-15  Score=130.01  Aligned_cols=148  Identities=16%  Similarity=0.211  Sum_probs=100.0

Q ss_pred             CCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651         140 PLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR  217 (334)
Q Consensus       140 ~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~  217 (334)
                      .|.+.|.||..+..          ...+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++.         
T Consensus        42 ~~~~~~~~t~~~~~----------~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~---------  102 (194)
T 2atx_A           42 AFPEEYVPTVFDHY----------AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP---------  102 (194)
T ss_dssp             SCCCSCCCSSCCCE----------EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH---------
T ss_pred             CCCCCCCCccccee----------EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCH---------
Confidence            45567777765432          11233333  6789999999999999999999999999999999997         


Q ss_pred             cccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         218 TNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       218 ~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                       .++.+.. .|+..+...  ..+.|++|++||+|+..+.-  ....+..    .....-..+.+.++....         
T Consensus       103 -~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---------  164 (194)
T 2atx_A          103 -ASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPK--TLARLND----MKEKPICVEQGQKLAKEI---------  164 (194)
T ss_dssp             -HHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHH--HHHHHTT----TTCCCCCHHHHHHHHHHH---------
T ss_pred             -HHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccccc--chhhccc----ccCcccCHHHHHHHHHHc---------
Confidence             5666665 455555443  34789999999999976421  1111111    111112334443333321         


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ....+++|||+++.||+++|+++.+.++
T Consensus       165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          165 GACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            1125889999999999999999998876

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.65  E-value=4.8e-16  Score=147.69  Aligned_cols=134  Identities=22%  Similarity=0.365  Sum_probs=105.0

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....+..+++.++||||+||+.++..|..++++++++|+|+|+++.          .++.+...++..++....
T Consensus       194 ~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~----------~s~~~~~~~~~~~~~~~~  263 (329)
T 3o47_A          194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVNEAREELMRMLAEDE  263 (329)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCS----------SSHHHHHHHHHHHHTCGG
T ss_pred             ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCch----------HHHHHHHHHHHHHHhhhc
Confidence            5799999888888999999999999999999999999999999999999997          788888889999888766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..++|++||+||+|+..+.   ....+..                     . ..........+.+++|||+++.||.++|
T Consensus       264 ~~~~piilV~NK~Dl~~~~---~~~~i~~---------------------~-~~~~~~~~~~~~~~~vSAk~g~gi~el~  318 (329)
T 3o47_A          264 LRDAVLLVFANKQDLPNAM---NAAEITD---------------------K-LGLHSLRHRNWYIQATCATSGDGLYEGL  318 (329)
T ss_dssp             GTTCEEEEEEECTTSTTCC---CHHHHHH---------------------H-HTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             cCCCeEEEEEECccCCccc---CHHHHHH---------------------H-hchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence            6789999999999986542   1111111                     1 1222222356889999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      ++|.+.+.+
T Consensus       319 ~~l~~~l~~  327 (329)
T 3o47_A          319 DWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=1.1e-15  Score=133.07  Aligned_cols=118  Identities=15%  Similarity=0.137  Sum_probs=91.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++. +..|..++++++++|+|+|+++.          .++.+...++..+.......+.|++|++||+|
T Consensus        75 ~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D  143 (196)
T 2atv_A           75 VVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDR----------GSFEEVLPLKNILDEIKKPKNVTLILVGNKAD  143 (196)
T ss_dssp             EEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHTTSCCCEEEEEECGG
T ss_pred             EEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhhCCCCCcEEEEEECcc
Confidence            47799999999998 88999999999999999999997          66666667777776654456889999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc-hHHHHHHHHHHHHHHHh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE-NIKIVFNAVKNTILHRN  327 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~-nI~~vf~~v~~~I~~~~  327 (334)
                      +..++.    .              ..+.+..+...          ..+.+++|||+++. ||.++|+++.+.+.++.
T Consensus       144 l~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          144 LDHSRQ----V--------------STEEGEKLATE----------LACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             GGGGCC----S--------------CHHHHHHHHHH----------HTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             cccccc----c--------------CHHHHHHHHHH----------hCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            876421    0              11222222221          13678999999999 99999999999988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=132.07  Aligned_cols=151  Identities=16%  Similarity=0.186  Sum_probs=97.5

Q ss_pred             CCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         141 LFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       141 f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      |.+.|.||..|...          ..+.++  .+.+.+||++|++.++..|..++.+++++|||+|+++.          
T Consensus        45 ~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------  104 (201)
T 2q3h_A           45 YPTEYIPTAFDNFS----------AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSP----------  104 (201)
T ss_dssp             ------CCSSEEEE----------EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCH----------
T ss_pred             CCCCCCCcccceeE----------EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCH----------
Confidence            44667777644321          123333  36788999999999999999999999999999999997          


Q ss_pred             ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++.+.. .|+..+...  ..+.|++|++||+|+..+.-  ....+.+.    .......+.+..+....         .
T Consensus       105 ~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~  167 (201)
T 2q3h_A          105 SSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVK--VLIELDKC----KEKPVPEEAAKLLAEEI---------K  167 (201)
T ss_dssp             HHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHH--HHHHHHTT----TCCCCCHHHHHHHHHHH---------T
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchh--hhhhhccc----ccccCCHHHHHHHHHhc---------C
Confidence            5666665 455555443  24789999999999976421  11111110    00111223333222211         1


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      ...+++|||+++.||.++|+++.+.+++..-
T Consensus       168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          168 AASYIECSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence            2368999999999999999999999887643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=132.26  Aligned_cols=140  Identities=14%  Similarity=0.165  Sum_probs=95.6

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+....        ...+....+.+++||++||+.++. +..|+++++++|+|+|+++.          
T Consensus        44 ~~~~~~~~~t~~~~~~~--------~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~ilv~d~~~~----------  104 (187)
T 3c5c_A           44 KRFISEYDPNLEDTYSS--------EETVDHQPVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSR----------  104 (187)
T ss_dssp             SSCCSCCCTTCCEEEEE--------EEEETTEEEEEEEEECCC---CCC-THHHHTTCSEEEEEEETTCH----------
T ss_pred             CCCCcccCCCccceeeE--------EEEECCEEEEEEEEECCCCCcchh-HHHHHhhCCEEEEEEECCCH----------
Confidence            34557788876543211        111222457889999999998887 57899999999999999987          


Q ss_pred             ccHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         219 NRLHESRNIFDTIINNV--IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~--~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                      .++.+...|+..+....  ...+.|++|++||+|+..++.                  -..+.+.++...          
T Consensus       105 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~------------------v~~~~~~~~~~~----------  156 (187)
T 3c5c_A          105 QSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ------------------VTKAEGVALAGR----------  156 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS------------------SCHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc------------------cCHHHHHHHHHH----------
Confidence            66777777777766531  135789999999999865421                  012223323322          


Q ss_pred             CCeEEEEEee-ecCchHHHHHHHHHHHHHH
Q psy3651         297 KPLFHHFTTA-VDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       297 ~~i~~~~tsA-~d~~nI~~vf~~v~~~I~~  325 (334)
                      .++.+++||| +++.||+++|+++.+.+.+
T Consensus       157 ~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          157 FGCLFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             HTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             cCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence            1357899999 8999999999999987753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.65  E-value=4.2e-16  Score=134.45  Aligned_cols=118  Identities=11%  Similarity=0.172  Sum_probs=91.4

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ....+.+||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+.......+.|++|++||+
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~  131 (195)
T 1x3s_A           62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR----------DTFVKLDNWLNELETYCTRNDIVNMLVGNKI  131 (195)
T ss_dssp             EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred             eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCcCCCcEEEEEECC
Confidence            357899999999999999999999999999999999997          5566666677777654434678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+....+  .                 .+.+..+...          ..+.+++|||+++.||+++|+++.+.+.+.
T Consensus       132 Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          132 DKENREV--D-----------------RNEGLKFARK----------HSMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             TSSSCCS--C-----------------HHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             cCccccc--C-----------------HHHHHHHHHH----------cCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            9854322  1                 1122222221          246789999999999999999999988753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.65  E-value=5.3e-16  Score=131.89  Aligned_cols=133  Identities=17%  Similarity=0.237  Sum_probs=92.9

Q ss_pred             eeccee--EEEEEeeC---cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         158 ATKGIT--EFTIVISN---IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       158 ~T~Gi~--~~~~~~~~---~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ||+|++  ...+.+.+   ..+++||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+.
T Consensus        37 ~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~  106 (178)
T 2hxs_A           37 QTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNY----------QSFENLEDWYTVVK  106 (178)
T ss_dssp             HTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHH
T ss_pred             CceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHH
Confidence            455533  34555544   7899999999999999999999999999999999997          44444444444443


Q ss_pred             hhc-CCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         233 NNV-IFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       233 ~~~-~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      ... ...+.| ++|++||+|+..++-  .                ..+.+..+...          .++.+++|||+++.
T Consensus       107 ~~~~~~~~~~~iilv~nK~Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~  158 (178)
T 2hxs_A          107 KVSEESETQPLVALVGNKIDLEHMRT--I----------------KPEKHLRFCQE----------NGFSSHFVSAKTGD  158 (178)
T ss_dssp             HHHHHHTCCCEEEEEEECGGGGGGCS--S----------------CHHHHHHHHHH----------HTCEEEEECTTTCT
T ss_pred             HHhcccCCCCeEEEEEEccccccccc--c----------------CHHHHHHHHHH----------cCCcEEEEeCCCCC
Confidence            311 112344 899999999866421  0                11222222221          23678999999999


Q ss_pred             hHHHHHHHHHHHHHHHhh
Q psy3651         311 NIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       311 nI~~vf~~v~~~I~~~~l  328 (334)
                      ||.++|+++.+.+.+..+
T Consensus       159 gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          159 SVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             THHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHhhhh
Confidence            999999999998876544

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.65  E-value=2.6e-15  Score=127.65  Aligned_cols=122  Identities=13%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEEe
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFLN  247 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~lN  247 (334)
                      ...+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+....   ...+.|++|++|
T Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n  126 (182)
T 1ky3_A           57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA----------SSFENIKSWRDEFLVHANVNSPETFPFVILGN  126 (182)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEE
T ss_pred             EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCCh----------HHHHHHHHHHHHHHHHhcccCcCCCcEEEEEE
Confidence            36789999999999999999999999999999999997          45555555666555432   236789999999


Q ss_pred             CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      |+|+....-   ..              ..+.+.++...         ...+.+++|||+++.||+++|+++.+.+++++
T Consensus       127 K~Dl~~~~~---~v--------------~~~~~~~~~~~---------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          127 KIDAEESKK---IV--------------SEKSAQELAKS---------LGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             CTTSCGGGC---CS--------------CHHHHHHHHHH---------TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCccccccc---cC--------------CHHHHHHHHHh---------cCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            999854321   10              11222222111         13456899999999999999999999998765


Q ss_pred             h
Q psy3651         328 L  328 (334)
Q Consensus       328 l  328 (334)
                      .
T Consensus       181 ~  181 (182)
T 1ky3_A          181 Q  181 (182)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.64  E-value=5.5e-16  Score=132.85  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=90.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++.+++++|+|+|+++.          .++.+...++..+.......+.|++|++||+|
T Consensus        51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D  120 (189)
T 4dsu_A           51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT----------KSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD  120 (189)
T ss_dssp             EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence            35688999999999999999999999999999999997          67777777888877765567899999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      +.....  ..                 +.+..+...          ..+.++++||+++.||.++|+++.+.+.+..
T Consensus       121 l~~~~~--~~-----------------~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  168 (189)
T 4dsu_A          121 LPSRTV--DT-----------------KQAQDLARS----------YGIPFIETSAKTRQGVDDAFYTLVREIRKHK  168 (189)
T ss_dssp             SSSCSS--CH-----------------HHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             Cccccc--CH-----------------HHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence            865432  11                 112112111          1356899999999999999999999987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.64  E-value=1.6e-15  Score=126.73  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=91.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++++|+|+++.          .++.+...++..+.......+.|++|++||+|
T Consensus        50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D  119 (167)
T 1kao_A           50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ----------QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD  119 (167)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGG
T ss_pred             EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEECCc
Confidence            35689999999999999999999999999999999997          67777778888887765556899999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++-   .               ..+.+..+...          .++.+++|||+++.||.++|+++.+.+.+
T Consensus       120 l~~~~~---~---------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          120 LESERE---V---------------SSSEGRALAEE----------WGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             GGGGCC---S---------------CHHHHHHHHHH----------HTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccc---C---------------CHHHHHHHHHH----------hCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            865421   0               11122222221          13468999999999999999999987753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.64  E-value=6.3e-16  Score=134.13  Aligned_cols=120  Identities=13%  Similarity=0.125  Sum_probs=88.5

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++|++.++..|..++++++++|+|+|+++.          .++.+....|...+.. ...+.|++||+||+|
T Consensus        70 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~D  138 (194)
T 3reg_A           70 EFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNR----------TSFDNISTKWEPEIKH-YIDTAKTVLVGLKVD  138 (194)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHH-HCTTSEEEEEEECGG
T ss_pred             EEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHH-hCCCCCEEEEEEChh
Confidence            46789999999999999999999999999999999997          6666654444444443 246789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeE-EEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLF-HHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~-~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      +..+.-  ..              ...+.+.++....          ++. +++|||+++.||.++|+++.+.++++.
T Consensus       139 l~~~~~--~~--------------~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          139 LRKDGS--DD--------------VTKQEGDDLCQKL----------GCVAYIEASSVAKIGLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             GCCTTT--TC--------------CCHHHHHHHHHHH----------TCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred             hccCCC--Cc--------------ccHHHHHHHHHhc----------CCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence            875321  11              1122222222221          233 889999999999999999999887654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.64  E-value=1.8e-15  Score=128.33  Aligned_cols=117  Identities=19%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ....+.+||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+.... ..+.|++|++||+
T Consensus        62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~  130 (179)
T 1z0f_A           62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLT-NPNTVIILIGNKA  130 (179)
T ss_dssp             EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEEEEEEECT
T ss_pred             eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence            347899999999999999999999999999999999997          45555555665555432 3578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+..++-    .              ..+.+.++...          ..+.++++||+++.||.++|+++.+.+++
T Consensus       131 Dl~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          131 DLEAQRD----V--------------TYEEAKQFAEE----------NGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TCGGGCC----S--------------CHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             ccccccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            9965421    0              11222222221          24678999999999999999999988754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.64  E-value=4.2e-15  Score=128.43  Aligned_cols=124  Identities=20%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      ..+.+.+  +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+... ...+.|+
T Consensus        56 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~  124 (196)
T 3tkl_A           56 RTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDRY-ASENVNK  124 (196)
T ss_dssp             EEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             EEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCCE
Confidence            3444444  7899999999999999999999999999999999997          5566666666666543 2357899


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +|++||+|+..++.  .                ..+.+..+..          ...+.+++|||+++.||.++|+++.+.
T Consensus       125 ilv~nK~Dl~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~g~gv~~l~~~l~~~  176 (196)
T 3tkl_A          125 LLVGNKCDLTTKKV--V----------------DYTTAKEFAD----------SLGIPFLETSAKNATNVEQSFMTMAAE  176 (196)
T ss_dssp             EEEEECTTCTTTCC--S----------------CHHHHHHHHH----------HTTCCEEEECTTTCTTHHHHHHHHHHH
T ss_pred             EEEEECcccccccc--c----------------CHHHHHHHHH----------HcCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999876532  1                1111111111          123568999999999999999999999


Q ss_pred             HHHHh
Q psy3651         323 ILHRN  327 (334)
Q Consensus       323 I~~~~  327 (334)
                      +.++.
T Consensus       177 i~~~~  181 (196)
T 3tkl_A          177 IKKRM  181 (196)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            88754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.64  E-value=4.1e-15  Score=128.72  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=92.2

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+..+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+... ...+.|++|++||+
T Consensus        72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~----------~s~~~~~~~l~~i~~~-~~~~~piilv~nK~  140 (193)
T 2oil_A           72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH----------QTYAVVERWLKELYDH-AEATIVVMLVGNKS  140 (193)
T ss_dssp             EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHTT-SCTTCEEEEEEECG
T ss_pred             EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCCCeEEEEEECC
Confidence            457899999999999999999999999999999999996          5566666677776653 23578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      |+..++-    .              ..+.+..+..          ...+.+++|||+++.||+++|+++.+.++++.-
T Consensus       141 Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  191 (193)
T 2oil_A          141 DLSQARE----V--------------PTEEARMFAE----------NNGLLFLETSALDSTNVELAFETVLKEIFAKVS  191 (193)
T ss_dssp             GGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             Ccccccc----c--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            9965421    0              1122222221          134678999999999999999999999887643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.64  E-value=1.3e-15  Score=133.96  Aligned_cols=147  Identities=16%  Similarity=0.141  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||..|...          ..+.++  .+.+.+||++|++.++..|..++++++++|+|+|+++.        
T Consensus        32 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~--------   93 (212)
T 2j0v_A           32 NKFPTDYIPTVFDNFS----------ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISK--------   93 (212)
T ss_dssp             SCCCSSCCCSSCCCEE----------EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCH--------
T ss_pred             CCCCccCCCccceeEE----------EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCH--------
Confidence            4555677777654321          122233  36899999999999999999999999999999999997        


Q ss_pred             ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651         217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE  295 (334)
Q Consensus       217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~  295 (334)
                        .++.+.. .|+..+...  ..+.|++|++||+|+..++.  ..   ..     ....-..+.+.++....        
T Consensus        94 --~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~~---~~-----~~~~v~~~~~~~~~~~~--------  151 (212)
T 2j0v_A           94 --ASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKG--YL---AD-----HTNVITSTQGEELRKQI--------  151 (212)
T ss_dssp             --HHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH--HH---HT-----CSSCCCHHHHHHHHHHH--------
T ss_pred             --HHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCcc--cc---cc-----ccCCCCHHHHHHHHHHc--------
Confidence              5666665 455554433  24789999999999865431  10   00     00011233333232221        


Q ss_pred             CCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         296 KKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                       ....+++|||+++.||.++|+++.+.+.+.
T Consensus       152 -~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          152 -GAAAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             -TCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             -CCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence             123689999999999999999999988754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.64  E-value=4e-15  Score=127.51  Aligned_cols=123  Identities=20%  Similarity=0.221  Sum_probs=92.2

Q ss_pred             EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.+++  +.+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+.... ..+.|++
T Consensus        51 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pii  119 (186)
T 2bme_A           51 IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNALTNWLTDARMLA-SQNIVII  119 (186)
T ss_dssp             EEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEEE
T ss_pred             EEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCCCcEE
Confidence            344444  7899999999999999999999999999999999996          55555566666655432 2578999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |++||+|+..++.    .              ..+.+..+..          ...+.+++|||+++.||.++|+++.+.+
T Consensus       120 lv~nK~Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  171 (186)
T 2bme_A          120 LCGNKKDLDADRE----V--------------TFLEASRFAQ----------ENELMFLETSALTGENVEEAFVQCARKI  171 (186)
T ss_dssp             EEEECGGGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEECcccccccc----c--------------CHHHHHHHHH----------HcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            9999999865421    1              1112222221          1346789999999999999999999988


Q ss_pred             HHHh
Q psy3651         324 LHRN  327 (334)
Q Consensus       324 ~~~~  327 (334)
                      .++.
T Consensus       172 ~~~~  175 (186)
T 2bme_A          172 LNKI  175 (186)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.63  E-value=5e-15  Score=129.64  Aligned_cols=117  Identities=16%  Similarity=0.201  Sum_probs=90.1

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+.... ..+.|++|++||+|
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~D  124 (206)
T 2bcg_Y           56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ----------ESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCD  124 (206)
T ss_dssp             EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred             EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCCCCEEEEEECCC
Confidence            36899999999999999999999999999999999997          56666666666665442 35789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..++.  .                ..+.+..+..          ...+.+++|||+++.||.++|+++.+.+.+.
T Consensus       125 l~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          125 LKDKRV--V----------------EYDVAKEFAD----------ANKMPFLETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             CTTTCC--S----------------CHHHHHHHHH----------HTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             Cccccc--c----------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            976421  0                1122222221          1235689999999999999999999988764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.63  E-value=3.5e-15  Score=125.32  Aligned_cols=119  Identities=16%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ....+.+||++|++.++..|..|+.+++++|+|+|+++.          .++.+...++..+.......+.|++|++||+
T Consensus        47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  116 (166)
T 3q72_A           47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK----------GSFEKASELRVQLRRARQTDDVPIILVGNKS  116 (166)
T ss_dssp             EEEEEEEEECC---------------CCEEEEEEETTCH----------HHHHHHHHHHHHHHHCC---CCCEEEEEECT
T ss_pred             EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEEecc
Confidence            446789999999999999999999999999999999997          6778888888888876555789999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..++.  .                ..+.+..+..          ...+.+++|||+++.||+++|+++.+.+.++
T Consensus       117 Dl~~~~~--~----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          117 DLVRSRE--V----------------SVDEGRACAV----------VFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             TCCSSCC--S----------------CHHHHHHHHH----------HTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccc--c----------------CHHHHHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            9875421  0                1111111111          1246789999999999999999999988764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.63  E-value=3.1e-15  Score=125.62  Aligned_cols=115  Identities=17%  Similarity=0.251  Sum_probs=88.9

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.... ..+.|++|++||+
T Consensus        53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~  121 (170)
T 1r2q_A           53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE----------ESFARAKNWVKELQRQA-SPNIVIALSGNKA  121 (170)
T ss_dssp             EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred             EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECc
Confidence            357899999999999999999999999999999999997          56677777777776543 3678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+..++.    .              ..+.+.++..          ...+.+++|||+++.||+++|+++.+.+
T Consensus       122 Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          122 DLANKRA----V--------------DFQEAQSYAD----------DNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             GGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             cCccccc----c--------------CHHHHHHHHH----------HcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9865421    1              1122222221          1346789999999999999999988754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.63  E-value=1.9e-15  Score=130.90  Aligned_cols=118  Identities=14%  Similarity=0.181  Sum_probs=90.2

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .++.+.+||++|++.++..|..++++++++|+|+|+++.          .++.....|+..+... ...+.|++||+||+
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~nK~  138 (191)
T 3dz8_A           70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWATQIKTY-SWDNAQVILVGNKC  138 (191)
T ss_dssp             TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEEEEEECT
T ss_pred             EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECC
Confidence            457899999999999999999999999999999999986          5555555555555443 34678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..++.  .                ..+.+..+...          .++.+++|||+++.||.++|+++.+.+.++
T Consensus       139 Dl~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          139 DMEEERV--V----------------PTEKGQLLAEQ----------LGFDFFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TCGGGCC--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCccccc--c----------------CHHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            9976532  1                11122212111          235789999999999999999999998765

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.62  E-value=4.2e-15  Score=129.68  Aligned_cols=117  Identities=15%  Similarity=0.181  Sum_probs=90.4

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++|||+|+++.          .++.....|+..+... ...+.|++|++||+|
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~nK~D  124 (203)
T 1zbd_A           56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCD  124 (203)
T ss_dssp             EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-SCSSCEEEEEEECTT
T ss_pred             EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence            57899999999999999999999999999999999996          5666666666666553 246789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..++.  .                ..+.+..+...          .++.+++|||+++.||.++|+++.+.+.++
T Consensus       125 l~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  172 (203)
T 1zbd_A          125 MEDERV--V----------------SSERGRQLADH----------LGFEFFEASAKDNINVKQTFERLVDVICEK  172 (203)
T ss_dssp             CTTSCC--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred             cCcccc--c----------------CHHHHHHHHHH----------CCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            965421  0                11222222211          135789999999999999999999988765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.62  E-value=3.5e-15  Score=132.79  Aligned_cols=130  Identities=23%  Similarity=0.281  Sum_probs=92.0

Q ss_pred             eeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         158 ATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       158 ~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +|+|..  ...+.+.+  +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+..
T Consensus        44 ~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~----------~s~~~~~~~l~~i~~  113 (223)
T 3cpj_B           44 STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS----------SSYENCNHWLSELRE  113 (223)
T ss_dssp             ---CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCH----------HHHHHHHHHHHHHHH
T ss_pred             CcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHH
Confidence            344433  33444544  7899999999999999999999999999999999997          667777777777655


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .. ..+.|++||+||+|+..++.    .              ..+.+..+...          ..+.+++|||+++.||+
T Consensus       114 ~~-~~~~piilv~nK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~  164 (223)
T 3cpj_B          114 NA-DDNVAVGLIGNKSDLAHLRA----V--------------PTEESKTFAQE----------NQLLFTETSALNSENVD  164 (223)
T ss_dssp             HC-C--CEEEEEECCGGGGGGCC----S--------------CHHHHHHHHHH----------TTCEEEECCCC-CCCHH
T ss_pred             hC-CCCCeEEEEEECcccccccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHH
Confidence            42 45789999999999865421    0              11222222211          24678999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         314 IVFNAVKNTILHR  326 (334)
Q Consensus       314 ~vf~~v~~~I~~~  326 (334)
                      ++|+++.+.+.++
T Consensus       165 ~l~~~l~~~i~~~  177 (223)
T 3cpj_B          165 KAFEELINTIYQK  177 (223)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.62  E-value=4.6e-15  Score=127.69  Aligned_cols=150  Identities=13%  Similarity=0.138  Sum_probs=98.8

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|.+.|.||..+...          ..+.+  ..+.+.+||++|++.++..|..++.+++++|+|+|+++.        
T Consensus        30 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~--------   91 (184)
T 1m7b_A           30 DCFPENYVPTVFENYT----------ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP--------   91 (184)
T ss_dssp             SCCCSSCCCCSEEEEE----------EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH--------
T ss_pred             CCCCCCCCCccceeEE----------EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCH--------
Confidence            3455667777643211          12222  346789999999999999999999999999999999997        


Q ss_pred             ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651         217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE  295 (334)
Q Consensus       217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~  295 (334)
                        .++.+.. .|+..+...  ..+.|++|++||+|+..+..  ....+...    ....-+.+.+.++....        
T Consensus        92 --~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~--------  153 (184)
T 1m7b_A           92 --ETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVS--TLVELSNH----RQTPVSYDQGANMAKQI--------  153 (184)
T ss_dssp             --HHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHH--HHHHHHTT----TCCCCCHHHHHHHHHHH--------
T ss_pred             --HHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchh--hHhhhhhc----ccCCCCHHHHHHHHHHc--------
Confidence              5666663 344444332  35789999999999975321  11111100    00112334444333321        


Q ss_pred             CCCeEEEEEeee-cCchHHHHHHHHHHHHHH
Q psy3651         296 KKPLFHHFTTAV-DTENIKIVFNAVKNTILH  325 (334)
Q Consensus       296 ~~~i~~~~tsA~-d~~nI~~vf~~v~~~I~~  325 (334)
                       ..+.+++|||+ ++.||+++|+++.+.+++
T Consensus       154 -~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          154 -GAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             -TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             -CCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence             12568999998 689999999999988764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.62  E-value=1.9e-15  Score=128.34  Aligned_cols=131  Identities=17%  Similarity=0.204  Sum_probs=92.4

Q ss_pred             eeeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         157 KATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       157 ~~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      .+|+|.+  ...+.+.+  +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~  106 (177)
T 1wms_A           37 FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS----------QSFQNLSNWKKEFI  106 (177)
T ss_dssp             --CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHH
T ss_pred             CCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHH
Confidence            3455544  23444444  6899999999999999999999999999999999997          44444444555444


Q ss_pred             hh---cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651         233 NN---VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT  309 (334)
Q Consensus       233 ~~---~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~  309 (334)
                      ..   ....+.|++|++||+|+....+  .                 .+.+.++...         ...+.+++|||+++
T Consensus       107 ~~~~~~~~~~~p~i~v~nK~Dl~~~~~--~-----------------~~~~~~~~~~---------~~~~~~~~~Sa~~~  158 (177)
T 1wms_A          107 YYADVKEPESFPFVILGNKIDISERQV--S-----------------TEEAQAWCRD---------NGDYPYFETSAKDA  158 (177)
T ss_dssp             HHHTCSCTTTSCEEEEEECTTCSSCSS--C-----------------HHHHHHHHHH---------TTCCCEEECCTTTC
T ss_pred             HHccccccCCCcEEEEEECCccccccc--C-----------------HHHHHHHHHh---------cCCceEEEEeCCCC
Confidence            32   2236789999999999863322  1                 1222222221         13456899999999


Q ss_pred             chHHHHHHHHHHHHHH
Q psy3651         310 ENIKIVFNAVKNTILH  325 (334)
Q Consensus       310 ~nI~~vf~~v~~~I~~  325 (334)
                      .||.++|+++.+.+++
T Consensus       159 ~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          159 TNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.62  E-value=8.7e-15  Score=124.65  Aligned_cols=119  Identities=12%  Similarity=0.066  Sum_probs=82.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh--cCCCCCcEEEEEeC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN--VIFRNVSFILFLNK  248 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~--~~~~~~piiL~lNK  248 (334)
                      .+.+++||++||+.     ..|+++++++|+|+|+++.          .++.....|++.+...  ....++|++|++||
T Consensus        53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  117 (178)
T 2iwr_A           53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDE----------NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ  117 (178)
T ss_dssp             EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEEC
T ss_pred             EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            36789999999986     4688999999999999997          5555555544333322  22357899999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      +|+..+.-  ..              ...+.+.++....         ..+.+++|||+++.||+++|+++.+.+++...
T Consensus       118 ~Dl~~~~~--~~--------------v~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~  172 (178)
T 2iwr_A          118 DRISASSP--RV--------------VGDARARALXADM---------KRCSYYETXATYGLNVDRVFQEVAQKVVTLRK  172 (178)
T ss_dssp             TTCBTTBC--CC--------------SCHHHHHHHHHHH---------SSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccc--Cc--------------CCHHHHHHHHHhh---------cCCeEEEEeccccCCHHHHHHHHHHHHHHHHh
Confidence            99853210  11              1122222222211         24678999999999999999999999887644


Q ss_pred             h
Q psy3651         329 R  329 (334)
Q Consensus       329 ~  329 (334)
                      +
T Consensus       173 ~  173 (178)
T 2iwr_A          173 Q  173 (178)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.62  E-value=1.8e-15  Score=133.48  Aligned_cols=118  Identities=17%  Similarity=0.223  Sum_probs=91.1

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+.......+.|++||+||+|
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~----------~s~~~~~~~l~~i~~~~~~~~~piilV~NK~D  152 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ----------QSFLNVRNWMSQLQANAYCENPDIVLIGNKAD  152 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCH----------HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCc
Confidence            56899999999999999999999999999999999996          56666666776665544346789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..++.    .              ..+.+.++...          ..+.+++|||+++.||.++|+++.+.+.++
T Consensus       153 l~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          153 LPDQRE----V--------------NERQARELADK----------YGIPYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             CGGGCC----S--------------CHHHHHHHHHH----------TTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             cccccc----c--------------CHHHHHHHHHH----------CCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            966421    0              11122222211          235689999999999999999999988764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.62  E-value=7.1e-15  Score=129.43  Aligned_cols=123  Identities=16%  Similarity=0.200  Sum_probs=90.7

Q ss_pred             EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.....|+..+... ...+.|++
T Consensus        67 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~-~~~~~pii  135 (201)
T 2ew1_A           67 TVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE----------ESFRCLPEWLREIEQY-ASNKVITV  135 (201)
T ss_dssp             EEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred             EEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh-cCCCCCEE
Confidence            344443  6899999999999999999999999999999999997          4555555566555443 23578999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ||+||+|+..++-    .              ..+.+..+...          ..+.+++|||+++.||.++|+++.+.+
T Consensus       136 lv~NK~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gv~~l~~~l~~~i  187 (201)
T 2ew1_A          136 LVGNKIDLAERRE----V--------------SQQRAEEFSEA----------QDMYYLETSAKESDNVEKLFLDLACRL  187 (201)
T ss_dssp             EEEECGGGGGGCS----S--------------CHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEECCCCccccc----c--------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999865421    0              11222222221          235689999999999999999999988


Q ss_pred             HHHh
Q psy3651         324 LHRN  327 (334)
Q Consensus       324 ~~~~  327 (334)
                      .++.
T Consensus       188 ~~~~  191 (201)
T 2ew1_A          188 ISEA  191 (201)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.62  E-value=1.8e-15  Score=130.48  Aligned_cols=121  Identities=13%  Similarity=0.110  Sum_probs=80.1

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|+..++..|..++++++++|+|+|+++.          .++.+...++..+.......+.|++|++||+|
T Consensus        68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~D  137 (190)
T 3con_A           68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS----------KSFADINLYREQIKRVKDSDDVPMVLVGNKCD  137 (190)
T ss_dssp             EEEEEEEECCC-----------CTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred             EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCc
Confidence            36689999999999999999999999999999999997          55666666666665543345789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhhhh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLRD  330 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l~~  330 (334)
                      +....+  .                 .+.+.++...          .++.+++|||+++.||.++|+++.+.+.+...++
T Consensus       138 l~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  188 (190)
T 3con_A          138 LPTRTV--D-----------------TKQAHELAKS----------YGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKK  188 (190)
T ss_dssp             CSCCCS--C-----------------HHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHHHHC---
T ss_pred             CCcccC--C-----------------HHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            865322  1                 1222222221          1346899999999999999999999998766554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.62  E-value=2.9e-15  Score=131.09  Aligned_cols=123  Identities=19%  Similarity=0.208  Sum_probs=93.1

Q ss_pred             EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.+.+  ..+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+.... ..+.|++
T Consensus        66 ~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~pii  134 (200)
T 2o52_A           66 VVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR----------ETYNSLAAWLTDARTLA-SPNIVVI  134 (200)
T ss_dssp             EEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHT-CTTCEEE
T ss_pred             EEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhc-CCCCcEE
Confidence            344444  7899999999999999999999999999999999997          55666666666665543 2678999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ||+||+|+..++.    .              ..+.+..+..          ...+.+++|||+++.||.++|+++.+.+
T Consensus       135 lv~nK~Dl~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~SA~~g~gi~~l~~~l~~~i  186 (200)
T 2o52_A          135 LCGNKKDLDPERE----V--------------TFLEASRFAQ----------ENELMFLETSALTGENVEEAFLKCARTI  186 (200)
T ss_dssp             EEEECGGGGGGCC----S--------------CHHHHHHHHH----------HTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEECCCcccccc----c--------------CHHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999865421    1              1112222221          1346789999999999999999999998


Q ss_pred             HHHh
Q psy3651         324 LHRN  327 (334)
Q Consensus       324 ~~~~  327 (334)
                      .++.
T Consensus       187 ~~~~  190 (200)
T 2o52_A          187 LNKI  190 (200)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.62  E-value=4.5e-15  Score=124.53  Aligned_cols=115  Identities=15%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+....  .+.|+++++||+|
T Consensus        53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~--~~~piilv~nK~D  120 (168)
T 1z2a_A           53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR----------ESFEAISSWREKVVAEV--GDIPTALVQNKID  120 (168)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHH--CSCCEEEEEECGG
T ss_pred             EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhC--CCCCEEEEEECcc
Confidence            46899999999999999999999999999999999996          45566666666665543  6789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++.  .                ..+.+.++...          .++.++++||+++.||+++|+++.+.+++
T Consensus       121 l~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          121 LLDDSC--I----------------KNEEAEGLAKR----------LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             GGGGCS--S----------------CHHHHHHHHHH----------HTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             cCcccc--c----------------CHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            876421  0                11222222221          13578999999999999999999988764

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.62  E-value=1.5e-16  Score=141.11  Aligned_cols=112  Identities=8%  Similarity=0.075  Sum_probs=79.1

Q ss_pred             ecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH---HHHHhhcC-CCCCcEEEEEeCC-Ccc
Q psy3651         178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF---DTIINNVI-FRNVSFILFLNKT-DLL  252 (334)
Q Consensus       178 DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf---~~i~~~~~-~~~~piiL~lNK~-Dl~  252 (334)
                      ++|||.+.|..|.+||+++++||||||.+|.          .|+. +...+   ..+++... +.++|++||+||+ |+.
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~----------~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp  176 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAH----------KRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  176 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTT----------CCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccH----------hHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence            6899999999999999999999999999996          4543 66666   44455543 5889999999995 786


Q ss_pred             hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      .. +  ....+.+.                      +++... .+.+++..|||++|+|+.+.++|+.+.+.++
T Consensus       177 ~A-m--s~~EI~e~----------------------L~L~~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          177 KR-M--PCFYLAHE----------------------LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             CB-C--CHHHHHHH----------------------TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CC-C--CHHHHHHH----------------------cCCcCC-CCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            54 3  44445443                      455444 4789999999999999999999999876543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.62  E-value=4.8e-15  Score=126.27  Aligned_cols=116  Identities=17%  Similarity=0.241  Sum_probs=89.7

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++|||+|+++.          .++.+...++..+.... ..+.|++|++||+|
T Consensus        60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~D  128 (181)
T 2efe_B           60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ----------ASFERAKKWVQELQAQG-NPNMVMALAGNKSD  128 (181)
T ss_dssp             EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECTT
T ss_pred             EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECCc
Confidence            46899999999999999999999999999999999986          56677777777776643 35789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++.    .              ..+.+.++...          ..+.++++||+++.||.++|+++.+.+.+
T Consensus       129 l~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          129 LLDARK----V--------------TAEDAQTYAQE----------NGLFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             CTTTCC----S--------------CHHHHHHHHHH----------TTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             cccccc----C--------------CHHHHHHHHHH----------cCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            865421    0              11222222211          24678999999999999999999887654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.62  E-value=3.4e-15  Score=125.70  Aligned_cols=115  Identities=13%  Similarity=0.195  Sum_probs=79.6

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+... ...+.|++|++||+|+
T Consensus        55 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl  123 (170)
T 1z08_A           55 VNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE----------DSFQKVKNWVKELRKM-LGNEICLCIVGNKIDL  123 (170)
T ss_dssp             EEEEEEECCCC-------CCSSTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGG
T ss_pred             EEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCeEEEEEECccc
Confidence            6789999999999999999999999999999999996          4555555555554432 1246899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ..++.    .              ..+.+.++...          .++.+++|||+++.||+++|+++.+.+.+
T Consensus       124 ~~~~~----~--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          124 EKERH----V--------------SIQEAESYAES----------VGAKHYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             GGGCC----S--------------CHHHHHHHHHH----------TTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             ccccc----c--------------CHHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence            76421    0              11222222211          23678999999999999999999988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.61  E-value=6.2e-15  Score=129.00  Aligned_cols=129  Identities=18%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+....|...+... ..+.|++|++||+|
T Consensus        72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D  140 (201)
T 2gco_A           72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP----------DSLENIPEKWTPEVKHF-CPNVPIILVGNKKD  140 (201)
T ss_dssp             EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH-STTCCEEEEEECGG
T ss_pred             EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh-CCCCCEEEEEecHH
Confidence            46889999999999999999999999999999999996          56666533333333322 35789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..+..  ....+.+.    ....-..+.+.++....         ....+++|||+++.||.++|+++.+.+++
T Consensus       141 l~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          141 LRQDEH--TRRELAKM----KQEPVRSEEGRDMANRI---------SAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             GTTCHH--HHHHHHTT----TCCCCCHHHHHHHHHHT---------TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             hhcCcc--chhhhccc----ccCcCCHHHHHHHHHhC---------CCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            976432  11122211    11112233333222211         12368999999999999999999987763

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.61  E-value=5.1e-15  Score=124.27  Aligned_cols=118  Identities=18%  Similarity=0.208  Sum_probs=89.0

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ....+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.... ..+.|++|++||+
T Consensus        50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~piilv~nK~  118 (170)
T 1ek0_A           50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP----------QSFIKARHWVKELHEQA-SKDIIIALVGNKI  118 (170)
T ss_dssp             EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS-CTTCEEEEEEECG
T ss_pred             EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECC
Confidence            346899999999999999999999999999999999997          66777777777776643 3678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+..+.-   ...+            ..+.+.++...          .++.+++|||+++.||.++|+++.+.+
T Consensus       119 Dl~~~~~---~~~v------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          119 DXLQEGG---ERKV------------AREEGEKLAEE----------KGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             GGGGSSC---CCCS------------CHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             Ccccccc---ccCC------------CHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9875411   0111            11222222211          235789999999999999999988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.61  E-value=1.8e-15  Score=131.84  Aligned_cols=120  Identities=15%  Similarity=0.214  Sum_probs=84.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC--CCCCcEEEEEeC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI--FRNVSFILFLNK  248 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~--~~~~piiL~lNK  248 (334)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+.....  ..+.|++||+||
T Consensus        72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK  141 (208)
T 2yc2_C           72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSM----------ESFESCKAWFELLKSARPDRERPLRAVLVANK  141 (208)
T ss_dssp             EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCH----------HHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence            46899999999999999999999999999999999997          667777777777776543  257899999999


Q ss_pred             CCcch-hhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec-CchHHHHHHHHHHHHHHH
Q psy3651         249 TDLLA-EKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD-TENIKIVFNAVKNTILHR  326 (334)
Q Consensus       249 ~Dl~~-eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d-~~nI~~vf~~v~~~I~~~  326 (334)
                      +|+.. ++.    .              ..+.+.++...          .++.+++|||++ +.||.++|+++.+.+.+.
T Consensus       142 ~Dl~~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          142 TDLPPQRHQ----V--------------RLDMAQDWATT----------NTLDFFDVSANPPGKDADAPFLSIATTFYRN  193 (208)
T ss_dssp             C-------C----C--------------CHHHHHHHHHH----------TTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred             cccchhhcc----C--------------CHHHHHHHHHH----------cCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence            99876 321    0              11222222221          236789999999 999999999999988865


Q ss_pred             hh
Q psy3651         327 NL  328 (334)
Q Consensus       327 ~l  328 (334)
                      ..
T Consensus       194 ~~  195 (208)
T 2yc2_C          194 YE  195 (208)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.61  E-value=6.2e-15  Score=127.59  Aligned_cols=138  Identities=17%  Similarity=0.159  Sum_probs=97.5

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|...|.||..+.           ...+.+++  +.+.+||++|++.++     ++++++++|+|+|+++.        
T Consensus        43 ~~~~~~~~~t~~~~-----------~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~--------   98 (184)
T 3ihw_A           43 GTYVQEESPEGGRF-----------KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDE--------   98 (184)
T ss_dssp             SSCCCCCCTTCEEE-----------EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCH--------
T ss_pred             CCCCCCcCCCcceE-----------EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCH--------
Confidence            45556677764321           12333333  678899999998876     88999999999999997        


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC
Q psy3651         217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK  296 (334)
Q Consensus       217 ~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~  296 (334)
                        .++.+...|+..+.......+.|++|++||+|+..+.-  ...              ..+.+.++...         .
T Consensus        99 --~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~v--------------~~~~~~~~~~~---------~  151 (184)
T 3ihw_A           99 --ISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANP--RVI--------------DDSRARKLSTD---------L  151 (184)
T ss_dssp             --HHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBC--CCS--------------CHHHHHHHHHH---------T
T ss_pred             --HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc--ccc--------------CHHHHHHHHHH---------c
Confidence              67788788888887654446789999999999853211  111              11222222211         1


Q ss_pred             CCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         297 KPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       297 ~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ..+.+++|||+++.||+++|+++.+.++++.
T Consensus       152 ~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          152 KRCTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             TTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence            2367899999999999999999999988754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.61  E-value=5.4e-15  Score=129.02  Aligned_cols=118  Identities=15%  Similarity=0.221  Sum_probs=87.5

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEEeC
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFLNK  248 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~lNK  248 (334)
                      +.+.+||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+....   ...+.|++|++||
T Consensus        57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK  126 (207)
T 1vg8_A           57 VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP----------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNK  126 (207)
T ss_dssp             EEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEEC
T ss_pred             EEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCH----------HHHHHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence            6899999999999999999999999999999999986          44444445555544332   2246899999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      +|+....+  .                 .+.+..+...         ...+.+++|||+++.||.++|+++.+.+.+..
T Consensus       127 ~Dl~~~~~--~-----------------~~~~~~~~~~---------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          127 IDLENRQV--A-----------------TKRAQAWCYS---------KNNIPYFETSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             TTSSCCCS--C-----------------HHHHHHHHHH---------TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCCccccc--C-----------------HHHHHHHHHh---------cCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            99864322  1                 1112212111         13456899999999999999999999988654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.61  E-value=3.1e-15  Score=127.60  Aligned_cols=149  Identities=17%  Similarity=0.157  Sum_probs=86.9

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|...|.||..+.....   .     .+.-..+.+.+||++|++.++..|..++++++++|+|+|+++.          
T Consensus        31 ~~~~~~~~~t~~~~~~~~---~-----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------   92 (182)
T 3bwd_D           31 NTFPTDYVPTVFDNFSAN---V-----VVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISK----------   92 (182)
T ss_dssp             SCCC----------CBCC---C-----C-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCH----------
T ss_pred             CCCCCCCCCeeeeeEEEE---E-----EECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCH----------
Confidence            345566777765443211   1     1122346788999999999999999999999999999999986          


Q ss_pred             ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++.+.. .|+..+...  ..+.|++|++||+|+..++-  .   ... .+  ....-..+.+.++....         .
T Consensus        93 ~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~---~~~-~~--~~~~v~~~~~~~~~~~~---------~  153 (182)
T 3bwd_D           93 ASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQ--F---FID-HP--GAVPITTVQGEELKKLI---------G  153 (182)
T ss_dssp             HHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHH--H---HHH-C----CCCCCHHHHHHHHHHH---------T
T ss_pred             HHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcc--c---ccc-cc--cCCCCCHHHHHHHHHHc---------C
Confidence            5566655 344444332  24789999999999866432  1   000 00  00011223333222221         1


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ...+++|||+++.||.++|+++.+.++
T Consensus       154 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          154 APAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            136889999999999999999988764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.60  E-value=4.6e-15  Score=126.77  Aligned_cols=153  Identities=17%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+.....        ..+....+.+.+||++|++.++..|..++++++++|+|+|+++.          
T Consensus        28 ~~~~~~~~~t~~~~~~~~--------~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------   89 (186)
T 1mh1_A           28 NAFPGEYIPTVFDNYSAN--------VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP----------   89 (186)
T ss_dssp             SSCCSSCCCCSCCEEEEE--------EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------
T ss_pred             CCCCCCcCCcccceeEEE--------EEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCCh----------
Confidence            345567777765432111        11122346788999999999999999999999999999999996          


Q ss_pred             ccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++.+.. .|+..+...  ..+.|++|++||+|+..+.-  ....+.+.    ....-..+.+..+....         .
T Consensus        90 ~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~  152 (186)
T 1mh1_A           90 ASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKEI---------G  152 (186)
T ss_dssp             HHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT---------T
T ss_pred             hhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccch--hhhhhccc----ccccCCHHHHHHHHHhc---------C
Confidence            5666665 355554443  24789999999999865421  11111110    00111223332222110         1


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ...+++|||+++.||.++|+++.+.+++.
T Consensus       153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          153 AVKYLECSALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             CSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             CcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence            23789999999999999999999887643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.60  E-value=5.7e-15  Score=127.52  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=88.5

Q ss_pred             EEEeeC--cceeeeecCCccccc-ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQR-RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r-~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      .+.+++  ..+.+||++|++.++ ..|..++++++++|||+|+++.          .++.....|+..+.......+.|+
T Consensus        61 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~i~~~~~~~~~pi  130 (189)
T 1z06_A           61 AVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNM----------ASFHSLPAWIEECKQHLLANDIPR  130 (189)
T ss_dssp             EEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHCCCSCCCE
T ss_pred             EEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHhcCCCCCCE
Confidence            344443  789999999999998 8999999999999999999997          566666677777776544567899


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC---chHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT---ENIKIVFNAV  319 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~---~nI~~vf~~v  319 (334)
                      +|++||+|+..++-    .              ..+.+..+..          ..++.+++|||+++   .||.++|.++
T Consensus       131 ilv~nK~Dl~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~~~~i~~l~~~l  182 (189)
T 1z06_A          131 ILVGNKCDLRSAIQ----V--------------PTDLAQKFAD----------THSMPLFETSAKNPNDNDHVEAIFMTL  182 (189)
T ss_dssp             EEEEECTTCGGGCC----S--------------CHHHHHHHHH----------HTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             EEEEECccccccce----e--------------CHHHHHHHHH----------HcCCEEEEEeCCcCCcccCHHHHHHHH
Confidence            99999999965421    0              1111211111          12356899999999   9999999999


Q ss_pred             HHHHHH
Q psy3651         320 KNTILH  325 (334)
Q Consensus       320 ~~~I~~  325 (334)
                      .+.+.+
T Consensus       183 ~~~i~~  188 (189)
T 1z06_A          183 AHKLKS  188 (189)
T ss_dssp             C-----
T ss_pred             HHHHhh
Confidence            887653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.60  E-value=2.5e-15  Score=133.09  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=76.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+.. .|+..+...  ..++|++||+||+
T Consensus        81 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~  148 (214)
T 2j1l_A           81 PVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSP----------NSFDNIFNRWYPEVNHF--CKKVPIIVVGCKT  148 (214)
T ss_dssp             EEEEEEEEC---------------CEEEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--CSSCCEEEEEECG
T ss_pred             EEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEECh
Confidence            46789999999999999999999999999999999997          5666665 345554432  3678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      |+..++-  ....+...    ....-..+.+.++....         ....+++|||+++.||+++|+++.+.+++...
T Consensus       149 Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~~  212 (214)
T 2j1l_A          149 DLRKDKS--LVNKLRRN----GLEPVTYHRGQEMARSV---------GAVAYLECSARLHDNVHAVFQEAAEVALSSRG  212 (214)
T ss_dssp             GGGSCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT---------TCSEEEECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred             hhhccch--hhhhhccc----ccCcccHHHHHHHHHhc---------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            9976431  11111110    01112233333222211         11378999999999999999999999987543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.60  E-value=2.5e-15  Score=126.40  Aligned_cols=122  Identities=14%  Similarity=0.213  Sum_probs=90.2

Q ss_pred             EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      ..+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+.... ..+.|+
T Consensus        43 ~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~pi  111 (170)
T 1g16_A           43 KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------RTFTNIKQWFKTVNEHA-NDEAQL  111 (170)
T ss_dssp             EEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEE
T ss_pred             EEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcE
Confidence            3444443  6789999999999999999999999999999999986          45555556666665432 357899


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +|++||+|+....+  .                 .+.+.++...          .++.+++|||+++.||.++|+++.+.
T Consensus       112 ilv~nK~Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~~  162 (170)
T 1g16_A          112 LLVGNKSDMETRVV--T-----------------ADQGEALAKE----------LGIPFIESSAKNDDNVNEIFFTLAKL  162 (170)
T ss_dssp             EEEEECTTCTTCCS--C-----------------HHHHHHHHHH----------HTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEECccCCcCcc--C-----------------HHHHHHHHHH----------cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999943222  1                 1222222221          13568999999999999999999998


Q ss_pred             HHHH
Q psy3651         323 ILHR  326 (334)
Q Consensus       323 I~~~  326 (334)
                      +.++
T Consensus       163 ~~~~  166 (170)
T 1g16_A          163 IQEK  166 (170)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.60  E-value=1.1e-14  Score=128.41  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=88.9

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+.. .|+..+...  ..+.|++|++||+
T Consensus        75 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~----------~s~~~~~~~~~~~i~~~--~~~~piilv~nK~  142 (205)
T 1gwn_A           75 RIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP----------ETLDSVLKKWKGEIQEF--CPNTKMLLVGCKS  142 (205)
T ss_dssp             EEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--CTTCEEEEEEECG
T ss_pred             EEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHH--CCCCCEEEEEech
Confidence            46789999999999999999999999999999999997          5666663 444544432  3578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee-cCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV-DTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~-d~~nI~~vf~~v~~~I~~  325 (334)
                      |+..+.-  ....+...    ....-+.+.+.++....         ..+.+++|||+ ++.||+++|+++.+.+++
T Consensus       143 Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          143 DLRTDVS--TLVELSNH----RQTPVSYDQGANMAKQI---------GAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             GGGGCHH--HHHHHHTT----TCCCCCHHHHHHHHHHH---------TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhccchh--hhhhhccc----ccCCCCHHHHHHHHHHc---------CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            9975311  11111100    00111233343333221         12568999998 689999999999998875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.60  E-value=7.3e-15  Score=124.79  Aligned_cols=129  Identities=12%  Similarity=0.184  Sum_probs=90.8

Q ss_pred             EEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      ...+.+++..+.+||++|++.++..|..++.+++++|+|+|+++.           ...+++..+..+..    .+.|++
T Consensus        47 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-----------~~~~~~~~l~~~~~----~~~p~i  111 (178)
T 2lkc_A           47 AYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG-----------VMPQTVEAINHAKA----ANVPII  111 (178)
T ss_dssp             CCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC-----------CCHHHHHHHHHHGG----GSCCEE
T ss_pred             EEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHh----CCCCEE
Confidence            345566778899999999999999999999999999999999883           34455555544422    468999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |++||+|+.....    ..+...+.++                  ..+.......+.+++|||+++.||+++|+++.+.+
T Consensus       112 lv~nK~Dl~~~~~----~~~~~~~~~~------------------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  169 (178)
T 2lkc_A          112 VAINKMDKPEANP----DRVMQELMEY------------------NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS  169 (178)
T ss_dssp             EEEETTTSSCSCH----HHHHHHHTTT------------------TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             EEEECccCCcCCH----HHHHHHHHhc------------------CcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence            9999999865311    1111110000                  00011111237899999999999999999999988


Q ss_pred             HHHhhh
Q psy3651         324 LHRNLR  329 (334)
Q Consensus       324 ~~~~l~  329 (334)
                      ....++
T Consensus       170 ~~~~~~  175 (178)
T 2lkc_A          170 EMEELK  175 (178)
T ss_dssp             HHTTTT
T ss_pred             hhhccc
Confidence            776654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.59  E-value=7.8e-15  Score=126.53  Aligned_cols=113  Identities=23%  Similarity=0.259  Sum_probs=88.0

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.++..|..++++++++|||+|+++.          ..+.+...|+..+....   +.|+++++||+|+
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~----------~s~~~~~~~~~~i~~~~---~~piilv~NK~D~  159 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNS----------NTLDRAKTWVNQLKISS---NYIIILVANKIDK  159 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHS---CCEEEEEEECTTC
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHhhC---CCcEEEEEECCCc
Confidence            6799999999999999999999999999999999997          56666667777776543   3899999999993


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ....+                   ..+.+.+++.+          ..+.+++|||+++.||.++|+++.+.+.++
T Consensus       160 ~~~~~-------------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          160 NKFQV-------------------DILEVQKYAQD----------NNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             C-CCS-------------------CHHHHHHHHHH----------TTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccccC-------------------CHHHHHHHHHH----------cCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            22111                   12223323322          246789999999999999999999988765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=7.8e-15  Score=128.93  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=90.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+.. .|+..+...  ..+.|++|++||+
T Consensus        72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~--~~~~piilv~nK~  139 (207)
T 2fv8_A           72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSP----------DSLENIPEKWVPEVKHF--CPNVPIILVANKK  139 (207)
T ss_dssp             EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCH----------HHHHHHHHTHHHHHHHH--STTCCEEEEEECG
T ss_pred             EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHh--CCCCCEEEEEEch
Confidence            36889999999999999999999999999999999996          5566653 344443332  3578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      |+..+..  ....+...    ....-..+.+..+....         ....+++|||+++.||+++|+++.+.+++..
T Consensus       140 Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~---------~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          140 DLRSDEH--VRTELARM----KQEPVRTDDGRAMAVRI---------QAYDYLECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             GGGGCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT---------TCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             hhhcccc--chhhhhhc----ccCCCCHHHHHHHHHhc---------CCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            9976432  12222221    11111223332222111         1236889999999999999999999887654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.59  E-value=3.6e-15  Score=129.43  Aligned_cols=117  Identities=14%  Similarity=0.123  Sum_probs=88.5

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ....+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+... ...+.|++|++||+
T Consensus        70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~  138 (192)
T 2fg5_A           70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ----------DSFYTLKKWVKELKEH-GPENIVMAIAGNKC  138 (192)
T ss_dssp             SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCT----------HHHHHHHHHHHHHHHH-SCTTCEEEEEEECG
T ss_pred             EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCH----------HHHHHHHHHHHHHHHh-CCCCCcEEEEEECc
Confidence            347899999999999999999999999999999999997          5666666666666553 24578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+..++-    .              ..+.+.++..          ..++.+++|||+++.||+++|+++.+.+.+
T Consensus       139 Dl~~~~~----v--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          139 DLSDIRE----V--------------PLKDAKEYAE----------SIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             GGGGGCC----S--------------CHHHHHHHHH----------TTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             ccccccc----c--------------CHHHHHHHHH----------HcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            9865321    1              1122222211          134678999999999999999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.59  E-value=1.1e-14  Score=123.43  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=86.8

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.++..|..++.+++++|+|+|+++.          .++.+...++..+.... ..+.|++|++||+|+
T Consensus        63 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl  131 (179)
T 2y8e_A           63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT----------NSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDL  131 (179)
T ss_dssp             EEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGG
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcc
Confidence            6899999999999999999999999999999999986          55566666666665532 357899999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ..++.  .                ..+.+..+...          ..+.++++||+++.||+++|+++.+.+.
T Consensus       132 ~~~~~--~----------------~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          132 SDKRQ--V----------------STEEGERKAKE----------LNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             GGGCC--S----------------CHHHHHHHHHH----------HTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             cccCc--C----------------CHHHHHHHHHH----------cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            65421  0                11122222221          1367899999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.59  E-value=2.9e-15  Score=124.90  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|+..++..|..++.+++++|+|+|+++.          .++.+...++..+.......+.|+++++||+|
T Consensus        50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~D  119 (166)
T 2ce2_X           50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT----------KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD  119 (166)
T ss_dssp             EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTT
T ss_pred             EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchh
Confidence            46788999999999999999999999999999999986          56666677777766654445789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +.....  .                 .+.+.++...          .++.++++||+++.|+.++|+++.+.+.+
T Consensus       120 l~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          120 LAARTV--E-----------------SRQAQDLARS----------YGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CSCCCS--C-----------------HHHHHHHHHH----------HTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred             hhhccc--C-----------------HHHHHHHHHH----------cCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            865322  1                 1122222211          13568999999999999999999987753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.59  E-value=5.4e-15  Score=129.95  Aligned_cols=148  Identities=16%  Similarity=0.180  Sum_probs=96.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.+...|.||..|...          ..+.+.  .+.+.+||++|++.++..|..++++++++|+|+|+++.        
T Consensus        53 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--------  114 (204)
T 4gzl_A           53 NAFPGEYIPTVFDNYS----------ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP--------  114 (204)
T ss_dssp             SCCCC-CCCCSEEEEE----------EEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH--------
T ss_pred             CCCCCCcCCeecceeE----------EEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCH--------
Confidence            4555677777654321          122222  35677999999999999999999999999999999997        


Q ss_pred             ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651         217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE  295 (334)
Q Consensus       217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~  295 (334)
                        .++.+.. .|+..+... . .+.|++|++||+|+..++.  ....+.+.    ....-..+.+..+...         
T Consensus       115 --~s~~~~~~~~~~~~~~~-~-~~~piilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~---------  175 (204)
T 4gzl_A          115 --ASFENVRAKWYPEVRHH-C-PNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKE---------  175 (204)
T ss_dssp             --HHHHHHHHTHHHHHHHH-C-SSCCEEEEEECHHHHTCHH--HHHHHHHT----TCCCCCHHHHHHHHHH---------
T ss_pred             --HHHHHHHHHHHHHHHHh-C-CCCCEEEEEechhhccchh--hhhhhhcc----ccccccHHHHHHHHHh---------
Confidence              6666665 344444433 2 6789999999999876432  11111110    0011122333222221         


Q ss_pred             CCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         296 KKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      .....+++|||+++.||.++|+++.+.+
T Consensus       176 ~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          176 IGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             cCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            1224589999999999999999998754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.59  E-value=8.9e-15  Score=123.19  Aligned_cols=118  Identities=15%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             CcceeeeecCCcccccc-cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRR-KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~-kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+.+||++|+..++. .|..++++++++|+|+|+++.          .++.+...++..+.......+.|++|++||+
T Consensus        50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~  119 (169)
T 3q85_A           50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHDLPVILVGNKS  119 (169)
T ss_dssp             EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred             EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCCh----------HHHHHHHHHHHHHHhcccCCCCCEEEEeeCc
Confidence            46788999999998876 888899999999999999997          6777777888888776555689999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..++.    .              ..+.+..+..          ...+.+++|||+++.||.++|+++.+.+..+
T Consensus       120 Dl~~~~~----~--------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          120 DLARSRE----V--------------SLEEGRHLAG----------TLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             TCGGGCC----S--------------CHHHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             chhhccc----C--------------CHHHHHHHHH----------HcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            9875421    1              1112211111          1246789999999999999999999988653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.59  E-value=5.5e-15  Score=129.53  Aligned_cols=122  Identities=14%  Similarity=0.218  Sum_probs=90.4

Q ss_pred             EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      ..+.+.+  +.+.+||++|++.++..|..++.+++++|||+|+++.          .++.+...++..+.... ..+.|+
T Consensus        60 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~-~~~~pi  128 (213)
T 3cph_A           60 KTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDE----------RTFTNIKQWFKTVNEHA-NDEAQL  128 (213)
T ss_dssp             EEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHT-TTCSEE
T ss_pred             EEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCCE
Confidence            3445554  7899999999999999999999999999999999986          45555556666655432 247899


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +||+||+|+....+  .                 .+.+..+...          ..+.+++|||+++.||.++|+++.+.
T Consensus       129 ilv~nK~Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~  179 (213)
T 3cph_A          129 LLVGNKSDMETRVV--T-----------------ADQGEALAKE----------LGIPFIESSAKNDDNVNEIFFTLAKL  179 (213)
T ss_dssp             EEEEECTTCSSCCS--C-----------------HHHHHHHHHH----------HTCCEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EEEEECCCCccccc--C-----------------HHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999843222  1                 1122222211          12468999999999999999999998


Q ss_pred             HHHH
Q psy3651         323 ILHR  326 (334)
Q Consensus       323 I~~~  326 (334)
                      +.+.
T Consensus       180 ~~~~  183 (213)
T 3cph_A          180 IQEK  183 (213)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.58  E-value=2.6e-14  Score=120.05  Aligned_cols=115  Identities=14%  Similarity=0.088  Sum_probs=87.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...++..+... ...+.|++|++||+|
T Consensus        54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~D  122 (170)
T 1z0j_A           54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE----------ETFSTLKNWVRELRQH-GPPSIVVAIAGNKCD  122 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHHH-SCTTSEEEEEEECTT
T ss_pred             EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-CCCCCcEEEEEECCc
Confidence            47899999999999999999999999999999999996          5566666666666553 346789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +..++-  .                ..+.+..+..          ...+.++++||+++.||+++|+++.+.+.
T Consensus       123 l~~~~~--v----------------~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          123 LTDVRE--V----------------MERDAKDYAD----------SIHAIFVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             CGGGCC--S----------------CHHHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             cccccc--c----------------CHHHHHHHHH----------HcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            975421  0                0111221111          12467899999999999999999987653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.58  E-value=1.5e-14  Score=122.31  Aligned_cols=120  Identities=14%  Similarity=0.123  Sum_probs=83.6

Q ss_pred             CcceeeeecCCccc--ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         171 NIPFLFVDVGGQRS--QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       171 ~~~~~i~DvgGq~~--~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ...+.+||++|+..  ++..+..++++++++|+|+|+++.          .++.....++..+.......+.|++|++||
T Consensus        51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~l~~~~~~~~~piilv~NK  120 (175)
T 2nzj_A           51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADR----------GSFESASELRIQLRRTHQADHVPIILVGNK  120 (175)
T ss_dssp             EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCH----------HHHHHHHHHHHHHHHCC----CCEEEEEEC
T ss_pred             EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhccCCCCEEEEEEC
Confidence            36789999999998  566677889999999999999997          667777777777766544467899999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      +|+..++-    .              ..+.+..+...          .++.+++|||+++.||.++|+++.+.+.....
T Consensus       121 ~Dl~~~~~----v--------------~~~~~~~~~~~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          121 ADLARCRE----V--------------SVEEGRACAVV----------FDCKFIETSATLQHNVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             TTCTTTCC----S--------------CHHHHHHHHHH----------HTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             hhhccccc----c--------------CHHHHHHHHHH----------cCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence            99965421    0              11122212111          13578999999999999999999998876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.58  E-value=5.6e-15  Score=128.33  Aligned_cols=118  Identities=16%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+.. ....+.|++|++||+|
T Consensus        74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~----------~s~~~~~~~~~~i~~-~~~~~~piilV~NK~D  142 (192)
T 2il1_A           74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK----------ETFDDLPKWMKMIDK-YASEDAELLLVGNKLD  142 (192)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHH-HSCTTCEEEEEEECGG
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH----------HHHHHHHHHHHHHHH-hcCCCCcEEEEEECcc
Confidence            36899999999999999999999999999999999996          445544444444433 3345789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..++-    .              ..+.+.++..        . -..+.+++|||+++.||+++|+++.+.++++
T Consensus       143 l~~~~~----v--------------~~~~~~~~~~--------~-~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          143 CETDRE----I--------------TRQQGEKFAQ--------Q-ITGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             GGGGCC----S--------------CHHHHHHHHH--------T-STTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cccccc----c--------------CHHHHHHHHH--------h-cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            865421    0              0111111111        1 1346789999999999999999999988753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.57  E-value=9.9e-15  Score=127.57  Aligned_cols=118  Identities=16%  Similarity=0.176  Sum_probs=89.9

Q ss_pred             CcceeeeecCCcccccc-cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRR-KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~-kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+.+.+||++|+..++. .|..|+++++++|+|+|+++.          .++.+...|+..+.......++|++|++||+
T Consensus        71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~  140 (195)
T 3cbq_A           71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDR----------RSFSKVPETLLRLRAGRPHHDLPVILVGNKS  140 (195)
T ss_dssp             EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHSTTSCCCEEEEEECT
T ss_pred             EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhcCCCCCCEEEEeech
Confidence            46788999999998765 788899999999999999997          6666777777777765444578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..++.    ..              .+.+..+...          ..+.+++|||+++.||+++|+++.+.+.+.
T Consensus       141 Dl~~~~~----v~--------------~~~~~~~a~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          141 DLARSRE----VS--------------LEEGRHLAGT----------LSCKHIETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             TCTTTCC----SC--------------HHHHHHHHHH----------TTCEEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             hccccCC----cC--------------HHHHHHHHHH----------hCCEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence            9865421    11              1222222111          235789999999999999999999988654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.57  E-value=2.5e-14  Score=127.55  Aligned_cols=117  Identities=15%  Similarity=0.167  Sum_probs=87.5

Q ss_pred             cceeeeecCCccc-ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         172 IPFLFVDVGGQRS-QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       172 ~~~~i~DvgGq~~-~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +.+.+||++|+.. ++..+..|+++++++|+|+|+++.          .++.....|+..+.......++|++||+||+|
T Consensus        87 ~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~----------~sf~~~~~~~~~l~~~~~~~~~piilVgNK~D  156 (211)
T 2g3y_A           87 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPIILVGNKSD  156 (211)
T ss_dssp             EEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCH----------HHHHHHHHHHHHHHTSGGGTTSCEEEEEECTT
T ss_pred             eEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCH----------HHHHHHHHHHHHHHHHhCCCCCcEEEEEEChH
Confidence            5678999999987 566778889999999999999997          67777777777766533335789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |..++.    ..              .+.+..+..          ...+.+++|||+++.||+++|+++.+.+...
T Consensus       157 L~~~r~----v~--------------~~e~~~~a~----------~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          157 LVRCRE----VS--------------VSEGRACAV----------VFDCKFIETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             CGGGCC----SC--------------HHHHHHHHH----------HHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             HhcCce----Ee--------------HHHHHHHHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            965421    11              111111111          1235789999999999999999999988654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.57  E-value=7.8e-15  Score=130.07  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=90.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +++.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+...  ..+.|++||+||+
T Consensus        62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~  129 (221)
T 3gj0_A           62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----------VTYKNVPNWHRDLVRV--CENIPIVLCGNKV  129 (221)
T ss_dssp             EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH--STTCCEEEEEECT
T ss_pred             EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHHh--CCCCCEEEEEECC
Confidence            457899999999999999999999999999999999997          5666666666666654  3578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+..++.  .. ....                 +..          ...+.+++|||+++.||.++|+++.+.+...
T Consensus       130 Dl~~~~~--~~-~~~~-----------------~~~----------~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~  176 (221)
T 3gj0_A          130 DIKDRKV--KA-KSIV-----------------FHR----------KKNLQYYDISAKSNYNFEKPFLWLARKLIGD  176 (221)
T ss_dssp             TSSSCSS--CG-GGCC-----------------HHH----------HHTCEEEECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred             ccccccc--cH-HHHH-----------------HHH----------HcCCEEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            9976543  11 1111                 111          1246789999999999999999999988764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.56  E-value=3e-14  Score=125.36  Aligned_cols=83  Identities=14%  Similarity=0.271  Sum_probs=64.9

Q ss_pred             eEEEEEee---CcceeeeecCCcccccc-cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc--C
Q psy3651         163 TEFTIVIS---NIPFLFVDVGGQRSQRR-KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV--I  236 (334)
Q Consensus       163 ~~~~~~~~---~~~~~i~DvgGq~~~r~-kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~--~  236 (334)
                      ....+.++   ++.+.+||++||..++. .|..|+++++++|||+|++++.         ..+.+...++..++...  .
T Consensus        42 ~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~  112 (214)
T 2fh5_B           42 SSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ---------REVKDVAEFLYQVLIDSMAL  112 (214)
T ss_dssp             EEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHHHHHTS
T ss_pred             eeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcC---------HHHHHHHHHHHHHHhhhhhc
Confidence            33335555   57899999999999998 8999999999999999999851         34667777777766542  2


Q ss_pred             CCCCcEEEEEeCCCcchh
Q psy3651         237 FRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~e  254 (334)
                      ..+.|++|++||+|+..+
T Consensus       113 ~~~~piilv~nK~Dl~~~  130 (214)
T 2fh5_B          113 KNSPSLLIACNKQDIAMA  130 (214)
T ss_dssp             TTCCEEEEEEECTTSTTC
T ss_pred             ccCCCEEEEEECCCCCCc
Confidence            346899999999999754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=2.3e-15  Score=130.37  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=86.4

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC-CCCCcEEEEEeC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI-FRNVSFILFLNK  248 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~-~~~~piiL~lNK  248 (334)
                      ....+.+||++|++.++..|..++.+++++|+|+|+++.          .++.+...++..+..... ..+.|++|++||
T Consensus        54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~piilv~nK  123 (199)
T 2gf0_A           54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK----------QSLEELGPIYKLIVQIKGSVEDIPVMLVGNK  123 (199)
T ss_dssp             EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHSCGGGSCEEEEEEC
T ss_pred             EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence            346789999999999999999999999999999999986          445544455544443221 356899999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +|+..+.+  .                 .+.+..+...          ..+.+++|||+++.||.++|+++.+.+.++
T Consensus       124 ~Dl~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          124 CDETQREV--D-----------------TREAQAVAQE----------WKCAFMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             TTCSSCSS--C-----------------HHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             ccCCcccc--C-----------------HHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence            99865322  1                 1112212111          235789999999999999999999877654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=1.5e-14  Score=121.60  Aligned_cols=116  Identities=15%  Similarity=0.107  Sum_probs=84.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCCCCCcEEEEEeCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIFRNVSFILFLNKT  249 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~~~~piiL~lNK~  249 (334)
                      ...+.+||++|++.++..|..++.+++++|+|+|+++.          .++.+...++..+... ....+.|++|++||+
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~  119 (172)
T 2erx_A           50 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR----------QSLEELKPIYEQICEIKGDVESIPIMLVGNKC  119 (172)
T ss_dssp             EEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTTHHHHHHHHHHHC---CCCEEEEEECG
T ss_pred             EEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH----------HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcc
Confidence            46789999999999999999999999999999999986          4555555566555543 223578999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      |+..++-      +.            .+.+..+...          .++.++++||+++.||+++|+++.+.+.
T Consensus       120 Dl~~~~~------v~------------~~~~~~~~~~----------~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (172)
T 2erx_A          120 DESPSRE------VQ------------SSEAEALART----------WKCAFMETSAKLNHNVKELFQELLNLEK  166 (172)
T ss_dssp             GGGGGCC------SC------------HHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             ccccccc------cC------------HHHHHHHHHH----------hCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence            9865421      00            1111111111          2357899999999999999999987654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=125.95  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+||++|++.++..|..++++++++|||+|+++.          .++.+...|+..+... ...+.|++||+||+|
T Consensus        76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~piilv~NK~D  144 (199)
T 2p5s_A           76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE----------KSFLNIREWVDMIEDA-AHETVPIMLVGNKAD  144 (199)
T ss_dssp             EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-C---CCEEEEEECGG
T ss_pred             EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCCh----------HHHHHHHHHHHHHHHh-cCCCCCEEEEEECcc
Confidence            47799999999999999999999999999999999986          4455555555544332 235789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +.....  . .....         -..+.+..+...          ..+.+++|||+++.||.++|.++.+.+.+
T Consensus       145 l~~~~~--~-~~~~~---------v~~~~~~~~~~~----------~~~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          145 IRDTAA--T-EGQKC---------VPGHFGEKLAMT----------YGALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             GHHHHH--H-TTCCC---------CCHHHHHHHHHH----------HTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             cccccc--c-ccccc---------cCHHHHHHHHHH----------cCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            975321  0 00000         112222222221          23578999999999999999999987753

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.54  E-value=1.9e-15  Score=140.11  Aligned_cols=112  Identities=8%  Similarity=0.081  Sum_probs=83.7

Q ss_pred             ecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH---HHHhhcC-CCCCcEEEEEeC-CCcc
Q psy3651         178 DVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD---TIINNVI-FRNVSFILFLNK-TDLL  252 (334)
Q Consensus       178 DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~---~i~~~~~-~~~~piiL~lNK-~Dl~  252 (334)
                      |+|||.+.|..|.+||++++|+|||||.+|.          .|+. +...+.   .+++... ..++|++|++|| +|+.
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDr----------eRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp  261 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAH----------KRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  261 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTT----------CCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcH----------hHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence            4799999999999999999999999999998          5654 555444   4555443 688999999996 6886


Q ss_pred             hhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      .. +  ....+.+.                      +++... .+.+++..|||++|+|+.+.++|+.+.+.++
T Consensus       262 ~A-m--s~~EI~e~----------------------L~L~~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          262 KR-M--PCFYLAHE----------------------LHLNLL-NHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             CB-C--CHHHHHHH----------------------TTGGGG-CSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             CC-C--CHHHHHHH----------------------cCCccC-CCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence            54 3  44444443                      445443 3789999999999999999999999877543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.54  E-value=3.4e-14  Score=125.34  Aligned_cols=131  Identities=14%  Similarity=0.107  Sum_probs=91.5

Q ss_pred             eeecceeEEEEEee---C--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         157 KATKGITEFTIVIS---N--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~---~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      .+|+|.......+.   +  +.+.+||++|++.++..|..++.+++++|+|+|+++.          .++.+...|+..+
T Consensus        41 ~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~  110 (218)
T 4djt_A           41 NATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSR----------ITCQNLARWVKEF  110 (218)
T ss_dssp             ETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHH
T ss_pred             CCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCH----------HHHHHHHHHHHHH
Confidence            44555554443332   1  6799999999999999999999999999999999997          4444444444544


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                      ... ...+.|++||+||+|+..++.  ...                +.+        ..+  .....+.+++|||+++.|
T Consensus       111 ~~~-~~~~~piilv~nK~Dl~~~~~--~~~----------------~~~--------~~~--~~~~~~~~~~~Sa~~g~g  161 (218)
T 4djt_A          111 QAV-VGNEAPIVVCANKIDIKNRQK--ISK----------------KLV--------MEV--LKGKNYEYFEISAKTAHN  161 (218)
T ss_dssp             HHH-HCSSSCEEEEEECTTCC------CCH----------------HHH--------HHH--TTTCCCEEEEEBTTTTBT
T ss_pred             HHh-cCCCCCEEEEEECCCCccccc--cCH----------------HHH--------HHH--HHHcCCcEEEEecCCCCC
Confidence            432 224589999999999865421  000                011        111  123457799999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTILHR  326 (334)
Q Consensus       312 I~~vf~~v~~~I~~~  326 (334)
                      |+++|+++.+.+.+.
T Consensus       162 v~~l~~~l~~~~~~~  176 (218)
T 4djt_A          162 FGLPFLHLARIFTGR  176 (218)
T ss_dssp             TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999988754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.52  E-value=2.4e-15  Score=131.22  Aligned_cols=128  Identities=20%  Similarity=0.226  Sum_probs=84.4

Q ss_pred             eeccee--EEEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         158 ATKGIT--EFTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       158 ~T~Gi~--~~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +|+|.+  ...+.+++  +.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+...|+..+..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~  133 (199)
T 3l0i_B           64 STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ----------ESFNNVKQWLQEIDR  133 (199)
T ss_dssp             HHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS----------HHHHHHHHHHHHHHS
T ss_pred             CcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH----------HHHHHHHHHHHHHHH
Confidence            444433  34444544  7899999999999999999999999999999999997          666777677666644


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      . ...+.|++|++||+|+..++.. .......+                      .     ....+.+++|||+++.||.
T Consensus       134 ~-~~~~~p~ilv~nK~Dl~~~~~v-~~~~~~~~----------------------~-----~~~~~~~~~vSA~~g~gv~  184 (199)
T 3l0i_B          134 Y-ASENVNKLLVGNKCDLTTKKVV-DYTTAKEF----------------------A-----DSLGIPFLETSAKNATNVE  184 (199)
T ss_dssp             C-C-CCSEEEEC-CCSSCC--CCC-CSCC-CHH----------------------H-----HTTTCCBCCCCC---HHHH
T ss_pred             h-ccCCCCEEEEEECccCCccccC-CHHHHHHH----------------------H-----HHcCCeEEEEECCCCCCHH
Confidence            2 3357899999999999765320 11111110                      0     0123568899999999999


Q ss_pred             HHHHHHHHHHH
Q psy3651         314 IVFNAVKNTIL  324 (334)
Q Consensus       314 ~vf~~v~~~I~  324 (334)
                      ++|+++.+.+.
T Consensus       185 ~l~~~l~~~l~  195 (199)
T 3l0i_B          185 QSFMTMAAEIK  195 (199)
T ss_dssp             HHHHHHTTTTT
T ss_pred             HHHHHHHHHHH
Confidence            99999987654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.51  E-value=1.4e-13  Score=119.86  Aligned_cols=117  Identities=15%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             cceeeeecCCccc-ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         172 IPFLFVDVGGQRS-QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       172 ~~~~i~DvgGq~~-~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +.+.+||+.|+.. ++..+..|+++++++|+|+|+++.          .++.....|+..+.......++|++|++||+|
T Consensus        56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~----------~s~~~~~~~~~~l~~~~~~~~~piilV~NK~D  125 (192)
T 2cjw_A           56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPIILVGNKSD  125 (192)
T ss_dssp             EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHTTTSCCCEEEEEECTT
T ss_pred             EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCH----------HHHHHHHHHHHHHHHhhCCCCCeEEEEEechh
Confidence            5678999999987 677888899999999999999997          67777767776666543345789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..++.    ...              +.+..+..          ...+.+++|||+++.||.++|+++.+.+...
T Consensus       126 l~~~r~----v~~--------------~~~~~~a~----------~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          126 LVRXRE----VSV--------------SEGRAXAV----------VFDXKFIETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             CGGGCC----SCH--------------HHHHHHHH----------HTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhcccc----ccH--------------HHHHHHHH----------HhCCceEEeccccCCCHHHHHHHHHHHHHhh
Confidence            865421    111              11111100          1235689999999999999999999988644

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.50  E-value=8.9e-14  Score=121.08  Aligned_cols=126  Identities=16%  Similarity=0.193  Sum_probs=83.3

Q ss_pred             eCcceeeeecCCccccccc-c--cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEE
Q psy3651         170 SNIPFLFVDVGGQRSQRRK-W--FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFL  246 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~k-w--~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~l  246 (334)
                      +.+.+++||++||+.+++. |  ..||++++++|||+|+++.        ....+.....++..+..  ...++|++||+
T Consensus        67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~l~~~~~--~~~~~piilv~  136 (196)
T 3llu_A           67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDD--------YMEALTRLHITVSKAYK--VNPDMNFEVFI  136 (196)
T ss_dssp             TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSC--------CHHHHHHHHHHHHHHHH--HCTTCEEEEEE
T ss_pred             CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCc--------hHHHHHHHHHHHHHHHh--cCCCCcEEEEE
Confidence            4589999999999997555 5  8999999999999999983        01234444445555433  24689999999


Q ss_pred             eCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         247 NKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       247 NK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ||+|+..+..  ......              .+..-....+.... .....+.+++|||++ .||.++|..+.+.|
T Consensus       137 nK~Dl~~~~~--~~~~~~--------------~v~~~~~~~~~~~~-~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          137 HKVDGLSDDH--KIETQR--------------DIHQRANDDLADAG-LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             ECGGGSCHHH--HHHHHH--------------HHHHHHHHHHHHTT-CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             eccccCchhh--hhHHHh--------------HHHHHHHHHHHHhh-hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence            9999865421  000000              01111111211111 113568899999999 99999999998765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.49  E-value=1.7e-13  Score=128.17  Aligned_cols=150  Identities=17%  Similarity=0.198  Sum_probs=98.4

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR  216 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~  216 (334)
                      +.|...|.||..|...          ..+.++  .+.+.+||++|++.++..|..++++++++|+|+|+++.        
T Consensus       178 ~~~~~~~~~t~~~~~~----------~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--------  239 (332)
T 2wkq_A          178 NAFPGEYIPTVFDNYS----------ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSP--------  239 (332)
T ss_dssp             SCCCCSCCCCSEEEEE----------EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCH--------
T ss_pred             CCCCcccCCcccceeE----------EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCH--------
Confidence            4555677776644321          122333  35677999999999999999999999999999999997        


Q ss_pred             ccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC
Q psy3651         217 RTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE  295 (334)
Q Consensus       217 ~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~  295 (334)
                        .++.+.. .|+..+...  ..+.|++|++||+|+..++-  ....+...    ....-..+.+.++....        
T Consensus       240 --~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~--------  301 (332)
T 2wkq_A          240 --ASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKEI--------  301 (332)
T ss_dssp             --HHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHH--HHHHHHHT----TCCCCCHHHHHHHHHHT--------
T ss_pred             --HHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccc--hhhhcccc----ccccccHHHHHHHHHHc--------
Confidence              5666665 344444432  24789999999999865421  11111110    00112233333232211        


Q ss_pred             CCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         296 KKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       296 ~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                       ....+++|||+++.||.++|+++.+.+++
T Consensus       302 -~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          302 -GAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             -TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             -CCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence             12378999999999999999999988764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.24  E-value=2.1e-15  Score=132.04  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ..+.+.+||++|++.++..|..++++++++|+|+|+++.          .++.+.. .|+..+...  ..+.|++|++||
T Consensus        76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~----------~s~~~~~~~~~~~l~~~--~~~~piilv~NK  143 (204)
T 3th5_A           76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSP----------ASFENVRAKWYPEVRHH--CPNTPIILVGTK  143 (204)
Confidence            346788999999999999999999999999999999987          5555555 344433322  237899999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +|+..+.-  ....+...    .......+.+..+          ....++ .+++|||+++.||+++|+++.+.++
T Consensus       144 ~Dl~~~~~--~~~~~~~~----~~~~v~~~~~~~~----------~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il  204 (204)
T 3th5_A          144 LDLRDDKD--TIEKLKEK----KLTPITYPQGLAM----------AKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  204 (204)
Confidence            99976421  11111110    0000001111111          111233 6789999999999999999987653

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.44  E-value=8.6e-14  Score=119.97  Aligned_cols=120  Identities=15%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      +.+.+.+||++||+.++..|..|+++++++++|+|+++..         .++.+...|+..+...  ..++|++|++||+
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~s~~~~~~~~~~~~~~--~~~~piilv~nK~  122 (184)
T 2zej_A           54 RDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQ---------AEVDAMKPWLFNIKAR--ASSSPVILVGTHL  122 (184)
T ss_dssp             --CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCH---------HHHHTHHHHHHHHHHH--CTTCEEEEEEECG
T ss_pred             CceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcch---------hHHHHHHHHHHHHHhh--CCCCcEEEEEECC
Confidence            3578999999999999999999999999999999998851         1344444556655443  2478999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe----EEEEEeeecCc-hHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL----FHHFTTAVDTE-NIKIVFNAVKNTIL  324 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i----~~~~tsA~d~~-nI~~vf~~v~~~I~  324 (334)
                      |+..++.  .. ....                 -+.   ..+..  ..++    .+++|||+++. ++.++++.+.+.+.
T Consensus       123 Dl~~~~~--~~-~~~~-----------------~~~---~~~~~--~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          123 DVSDEKQ--RK-ACMS-----------------KIT---KELLN--KRGFPAIRDYHFVNATEESDALAKLRKTIINESL  177 (184)
T ss_dssp             GGCCHHH--HH-HHHH-----------------HHH---HHTTT--CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred             Ccccchh--hH-HHHH-----------------HHH---HHHHH--hcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence            9876432  10 0000                 001   11111  1223    37899999996 99999999888776


Q ss_pred             H
Q psy3651         325 H  325 (334)
Q Consensus       325 ~  325 (334)
                      +
T Consensus       178 ~  178 (184)
T 2zej_A          178 N  178 (184)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.39  E-value=1.3e-12  Score=122.39  Aligned_cols=129  Identities=12%  Similarity=0.005  Sum_probs=85.4

Q ss_pred             CCCC-CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc
Q psy3651         139 SPLF-QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR  217 (334)
Q Consensus       139 ~~f~-~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~  217 (334)
                      +.|. ++|.||..|.....          +.. +.++.+||+  |++++.+|..||++++++|+|+|+++.+.       
T Consensus        40 ~~f~~~~~~pTiGd~~~~~----------~~~-~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~-------   99 (301)
T 1u0l_A           40 GKFRLQNLKIYVGDRVEYT----------PDE-TGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET-------   99 (301)
T ss_dssp             GGGTTTTCCCCTTCEEEEE----------CCC-SSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC-------
T ss_pred             ccccccCCCCCCccEEEEE----------EcC-CCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC-------
Confidence            5565 67888766543211          111 237899999  99999999999999999999999998621       


Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         218 TNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       218 ~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                        .+...-.|+..+ ..   .++|++|++||+||..++.   ..                 .+.++.. .+.      ..
T Consensus       100 --s~~~l~~~l~~~-~~---~~~piilv~NK~DL~~~~~---v~-----------------~~~~~~~-~~~------~~  146 (301)
T 1u0l_A          100 --STYIIDKFLVLA-EK---NELETVMVINKMDLYDEDD---LR-----------------KVRELEE-IYS------GL  146 (301)
T ss_dssp             --CHHHHHHHHHHH-HH---TTCEEEEEECCGGGCCHHH---HH-----------------HHHHHHH-HHT------TT
T ss_pred             --CHHHHHHHHHHH-HH---CCCCEEEEEeHHHcCCchh---HH-----------------HHHHHHH-HHh------hh
Confidence              222222333333 22   4789999999999865421   00                 1111221 111      12


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                       +.+++|||+++.||+++|..+..
T Consensus       147 -~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          147 -YPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             -SCEEECCTTTCTTHHHHHHHHSS
T ss_pred             -CcEEEEECCCCcCHHHHHHHhcC
Confidence             56899999999999999988754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.39  E-value=4.3e-13  Score=125.99  Aligned_cols=134  Identities=14%  Similarity=0.198  Sum_probs=91.6

Q ss_pred             eeecceeEEEEEe-eCcceeeeecCCcccc-----cccccccccCCCeEEEEEeCCCccchhhcccccccHHHH---HHH
Q psy3651         157 KATKGITEFTIVI-SNIPFLFVDVGGQRSQ-----RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHES---RNI  227 (334)
Q Consensus       157 ~~T~Gi~~~~~~~-~~~~~~i~DvgGq~~~-----r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~es---l~l  227 (334)
                      .+|+|+....+.+ ++..+.+||++||+.+     +..|..++++++++|+|+|+++.          .++.+.   ..+
T Consensus        36 ~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~----------~s~~~l~~~~~~  105 (307)
T 3r7w_A           36 GATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST----------EVLKDIEIFAKA  105 (307)
T ss_dssp             CCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCS----------CHHHHHHHHHHH
T ss_pred             CCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCCh----------hhHHHHHHHHHH
Confidence            5677877777765 5689999999999998     88999999999999999999997          444444   333


Q ss_pred             HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEee
Q psy3651         228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTA  306 (334)
Q Consensus       228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA  306 (334)
                      +..+...  ..++|++|++||+|+..+.-  .. .+...         ..+.+.        .+....+ ..+.+++|||
T Consensus       106 l~~l~~~--~~~~piilv~NK~Dl~~~~~--r~-~~~~v---------~~~~~~--------~~~~~~g~~~~~~~~tSa  163 (307)
T 3r7w_A          106 LKQLRKY--SPDAKIFVLLHKMDLVQLDK--RE-ELFQI---------MMKNLS--------ETSSEFGFPNLIGFPTSI  163 (307)
T ss_dssp             HHHHHHH--CTTCEEEEEEECGGGSCHHH--HH-HHHHH---------HHHHHH--------HHHHTTTCCSCEEEECCT
T ss_pred             HHHHHHh--CCCCeEEEEEecccccchhh--hh-HHHHH---------HHHHHH--------HHHHHcCCCCeEEEEeee
Confidence            4444432  36799999999999876210  00 00000         001111        1111111 1378999999


Q ss_pred             ecCchHHHHHHHHHHHH
Q psy3651         307 VDTENIKIVFNAVKNTI  323 (334)
Q Consensus       307 ~d~~nI~~vf~~v~~~I  323 (334)
                      ++ .++.++|..+...+
T Consensus       164 ~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          164 WD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             TS-SHHHHHHHHHHHTT
T ss_pred             cC-ChHHHHHHHHHHHH
Confidence            99 89999998887654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.38  E-value=1e-11  Score=108.18  Aligned_cols=122  Identities=18%  Similarity=0.222  Sum_probs=89.0

Q ss_pred             EEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEE
Q psy3651         166 TIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFI  243 (334)
Q Consensus       166 ~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pii  243 (334)
                      .+.+.+  +.+.+||++|++.+++.|..++++++++|+|+|+++.          .++.+...|+..+... ...+.|++
T Consensus        46 ~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~i~  114 (199)
T 2f9l_A           46 SIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH----------LTYENVERWLKELRDH-ADSNIVIM  114 (199)
T ss_dssp             EEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEEE
T ss_pred             EEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCeEE
Confidence            444544  6788999999999999999999999999999999986          4455555555555432 23568999


Q ss_pred             EEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         244 LFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       244 L~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +++||+|+...+-    .+              .+.+..+..        .  ..+.++.|||+++.++.++|+++.+.+
T Consensus       115 ~v~nK~Dl~~~~~----~~--------------~~~a~~l~~--------~--~~~~~~d~Sal~~~~i~~l~~~l~~~~  166 (199)
T 2f9l_A          115 LVGNKSDLRHLRA----VP--------------TDEARAFAE--------K--NNLSFIETSALDSTNVEEAFKNILTEI  166 (199)
T ss_dssp             EEEECTTCGGGCC----SC--------------HHHHHHHHH--------H--TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEECcccccccC----cC--------------HHHHHHHHH--------H--cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999865421    11              122222221        1  235678899999999999999999988


Q ss_pred             HHH
Q psy3651         324 LHR  326 (334)
Q Consensus       324 ~~~  326 (334)
                      .+.
T Consensus       167 ~~~  169 (199)
T 2f9l_A          167 YRI  169 (199)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.38  E-value=1.9e-12  Score=107.72  Aligned_cols=114  Identities=17%  Similarity=0.174  Sum_probs=79.5

Q ss_pred             eeEEEEEeeCcceeeeecCCccc-------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         162 ITEFTIVISNIPFLFVDVGGQRS-------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       162 i~~~~~~~~~~~~~i~DvgGq~~-------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .....+...+..+.+||++|+..       .+..|..++++++++|||+|.++..         ...   ..++..++..
T Consensus        39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~---------~~~---~~~~~~~~~~  106 (161)
T 2dyk_A           39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL---------TQA---DYEVAEYLRR  106 (161)
T ss_dssp             CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC---------CHH---HHHHHHHHHH
T ss_pred             ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc---------cHh---HHHHHHHHHh
Confidence            34445566778899999999987       4567888999999999999999841         111   1223333332


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIK  313 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~  313 (334)
                         .+.|+++++||+|+..++.     .+.++                      ..      .++ .+++|||+++.||+
T Consensus       107 ---~~~p~ilv~nK~Dl~~~~~-----~~~~~----------------------~~------~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A          107 ---KGKPVILVATKVDDPKHEL-----YLGPL----------------------YG------LGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             ---HTCCEEEEEECCCSGGGGG-----GCGGG----------------------GG------GSSCSCEECBTTTTBSHH
T ss_pred             ---cCCCEEEEEECcccccchH-----hHHHH----------------------Hh------CCCCCeEEEecccCCChH
Confidence               4689999999999876421     11111                      10      112 47899999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         314 IVFNAVKNTI  323 (334)
Q Consensus       314 ~vf~~v~~~I  323 (334)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999988753

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.38  E-value=5.2e-13  Score=113.00  Aligned_cols=114  Identities=15%  Similarity=0.075  Sum_probs=78.8

Q ss_pred             EEEEEeeCcceeeeecCCcccccc------ccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRR------KWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ...+.+++..+.+|||+||..++.      .+..|+.  +++++++|+|.++.          .+.   ..++..+..  
T Consensus        42 ~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~----------~~~---~~~~~~~~~--  106 (165)
T 2wji_A           42 EGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERN---LYLTLQLME--  106 (165)
T ss_dssp             EEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH----------HHH---HHHHHHHHH--
T ss_pred             EEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch----------hHh---HHHHHHHHh--
Confidence            344556678899999999998764      3467775  89999999999985          222   234444433  


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                        .+.|++|++||+|+..++-  ......                 .+ .+.         .++.+++|||+++.||+++
T Consensus       107 --~~~p~ilv~nK~Dl~~~~~--~~~~~~-----------------~~-~~~---------~~~~~~~~SA~~~~~v~~l  155 (165)
T 2wji_A          107 --MGANLLLALNKMDLAKSLG--IEIDVD-----------------KL-EKI---------LGVKVVPLSAAKKMGIEEL  155 (165)
T ss_dssp             --TTCCEEEEEECHHHHHHTT--CCCCHH-----------------HH-HHH---------HTSCEEECBGGGTBSHHHH
T ss_pred             --cCCCEEEEEEchHhccccC--hhhHHH-----------------HH-HHH---------hCCCEEEEEcCCCCCHHHH
Confidence              3689999999999865421  110111                 11 111         1245889999999999999


Q ss_pred             HHHHHHHH
Q psy3651         316 FNAVKNTI  323 (334)
Q Consensus       316 f~~v~~~I  323 (334)
                      |+++.+.+
T Consensus       156 ~~~l~~~~  163 (165)
T 2wji_A          156 KKAISIAV  163 (165)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998754

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.35  E-value=3.9e-12  Score=113.48  Aligned_cols=136  Identities=16%  Similarity=0.109  Sum_probs=87.4

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccc----cc-----ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRS----QR-----RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD  229 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~----~r-----~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~  229 (334)
                      |..+....+..++..+.+||++|+..    ++     ..|..++..++++|||+|+++...        -...+.+.++.
T Consensus        63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--------~~~~~~~~~~~  134 (228)
T 2qu8_A           63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG--------LTIKEQINLFY  134 (228)
T ss_dssp             --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS--------SCHHHHHHHHH
T ss_pred             ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC--------cchHHHHHHHH
Confidence            44455555666778999999999943    22     234556789999999999998621        12344556666


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651         230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT  309 (334)
Q Consensus       230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~  309 (334)
                      .+...  ..+.|++||+||+|+..++-  ......             +.+     ..+..   .....+.+++|||+++
T Consensus       135 ~l~~~--~~~~piilv~nK~Dl~~~~~--~~~~~~-------------~~~-----~~~~~---~~~~~~~~~~~SA~~g  189 (228)
T 2qu8_A          135 SIKSV--FSNKSIVIGFNKIDKCNMDS--LSIDNK-------------LLI-----KQILD---NVKNPIKFSSFSTLTG  189 (228)
T ss_dssp             HHHTC--C-CCCEEEEEECGGGCC--C--CCHHHH-------------HHH-----HHHHH---HCCSCEEEEECCTTTC
T ss_pred             HHHHh--hcCCcEEEEEeCcccCCchh--hHHHHH-------------HHH-----HHHHH---hcCCCceEEEEecccC
Confidence            66542  45789999999999865421  100000             011     11111   1112377899999999


Q ss_pred             chHHHHHHHHHHHHHHHh
Q psy3651         310 ENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       310 ~nI~~vf~~v~~~I~~~~  327 (334)
                      .||.++|+++.+.+.+..
T Consensus       190 ~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          190 VGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             TTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999887653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.35  E-value=1.4e-12  Score=119.09  Aligned_cols=118  Identities=17%  Similarity=0.155  Sum_probs=82.8

Q ss_pred             eCcceeeee-----------------------cCCccccccccccccc---------------------CCCeEEEEEeC
Q psy3651         170 SNIPFLFVD-----------------------VGGQRSQRRKWFQCFD---------------------SVTSILFLVSS  205 (334)
Q Consensus       170 ~~~~~~i~D-----------------------vgGq~~~r~kw~~~f~---------------------~v~~iIfv~dl  205 (334)
                      ..+.++|||                       ++||+.++..|..||.                     +++++|+|+|+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            457899999                       8999999999999998                     89999999999


Q ss_pred             CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL  285 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~  285 (334)
                      ++..        ..++.....|+..+.......++|++|++||+|+..++.      +.              .+.++  
T Consensus       173 t~~~--------~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~------v~--------------~~~~~--  222 (255)
T 3c5h_A          173 SRGM--------NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY------IR--------------DAHTF--  222 (255)
T ss_dssp             BC------------CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH------HH--------------HHHHH--
T ss_pred             CCCc--------hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHH------HH--------------HHHHH--
Confidence            9830        024555556666665432235789999999999865421      11              11111  


Q ss_pred             HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                            ... ...+.+++|||+++.||.++|+++.+.+.
T Consensus       223 ------~~~-~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          223 ------ALS-KKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             ------HHT-SSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             ------HHh-cCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence                  111 12467899999999999999999988653

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.29  E-value=3.3e-12  Score=109.07  Aligned_cols=115  Identities=21%  Similarity=0.362  Sum_probs=80.2

Q ss_pred             eeEEEEEeeCcceeeeecCCcccccc---------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         162 ITEFTIVISNIPFLFVDVGGQRSQRR---------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       162 i~~~~~~~~~~~~~i~DvgGq~~~r~---------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      .....+.+++..+.+||++|++....         .| .++++++++|+|+|+++..          ++. ...++..+.
T Consensus        42 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~~~~~----------s~~-~~~~~~~~~  109 (172)
T 2gj8_A           42 VLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDGTTTD----------AVD-PAEIWPEFI  109 (172)
T ss_dssp             CEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEETTTCC----------CCS-HHHHCHHHH
T ss_pred             eeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEECCCCC----------CHH-HHHHHHHHH
Confidence            34455666777899999999975321         22 4689999999999999862          222 235555554


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      +. ...+.|++|++||+|+..+..     .+.                              ......+++|||+++.||
T Consensus       110 ~~-~~~~~p~ilv~NK~Dl~~~~~-----~~~------------------------------~~~~~~~~~~SA~~g~gv  153 (172)
T 2gj8_A          110 AR-LPAKLPITVVRNKADITGETL-----GMS------------------------------EVNGHALIRLSARTGEGV  153 (172)
T ss_dssp             HH-SCTTCCEEEEEECHHHHCCCC-----EEE------------------------------EETTEEEEECCTTTCTTH
T ss_pred             Hh-cccCCCEEEEEECccCCcchh-----hhh------------------------------hccCCceEEEeCCCCCCH
Confidence            43 235789999999999854321     000                              012467899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTIL  324 (334)
Q Consensus       313 ~~vf~~v~~~I~  324 (334)
                      .++|+++.+.+-
T Consensus       154 ~~l~~~l~~~~~  165 (172)
T 2gj8_A          154 DVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999987654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.27  E-value=8.2e-11  Score=102.05  Aligned_cols=120  Identities=17%  Similarity=0.200  Sum_probs=85.3

Q ss_pred             EEEEeeC--cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         165 FTIVISN--IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       165 ~~~~~~~--~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      ..+.+.+  +.+++||++|++.++..|..++++++++++|+|+++.          .++.+...|+..+... ...+.|+
T Consensus        69 ~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~~i  137 (191)
T 1oix_A           69 RSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH----------LTYENVERWLKELRDH-ADSNIVI  137 (191)
T ss_dssp             EEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH-SCTTCEE
T ss_pred             EEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCH----------HHHHHHHHHHHHHHHh-cCCCCcE
Confidence            3444544  4567899999999999999999999999999999986          4444444455544332 2356899


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ++++||+|+...+-    ..              .+.+..+..        .  ..+.++.|||+|+.++.++|+++.+.
T Consensus       138 ~~v~nK~Dl~~~~~----~~--------------~~~a~~l~~--------~--~~~~~ld~Sald~~~v~~l~~~l~~~  189 (191)
T 1oix_A          138 MLVGNKSDLRHLRA----VP--------------TDEARAFAE--------K--NGLSFIETSALDSTNVEAAFQTILTE  189 (191)
T ss_dssp             EEEEECGGGGGGCC----SC--------------HHHHHHHHH--------H--TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEECcccccccc----cC--------------HHHHHHHHH--------H--cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999865421    11              122222221        1  23667889999999999999999876


Q ss_pred             H
Q psy3651         323 I  323 (334)
Q Consensus       323 I  323 (334)
                      |
T Consensus       190 i  190 (191)
T 1oix_A          190 I  190 (191)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.25  E-value=1.5e-11  Score=105.98  Aligned_cols=113  Identities=12%  Similarity=0.135  Sum_probs=78.2

Q ss_pred             CcceeeeecCC----------cccccccccccccCC---CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         171 NIPFLFVDVGG----------QRSQRRKWFQCFDSV---TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       171 ~~~~~i~DvgG----------q~~~r~kw~~~f~~v---~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      +..+.+||++|          ++.++..|..|++++   +++|||+|+++.          ....+ ..+++.+..    
T Consensus        68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~-~~~~~~~~~----  132 (195)
T 1svi_A           68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHA----------PSNDD-VQMYEFLKY----  132 (195)
T ss_dssp             TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----------CCHHH-HHHHHHHHH----
T ss_pred             CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCC----------CCHHH-HHHHHHHHH----
Confidence            44899999999          888888899998877   999999999985          22222 222222222    


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||+|+..++-      +..              ..+-+.+.+   .  ....+.+++|||+++.||.++|+
T Consensus       133 ~~~p~i~v~nK~Dl~~~~~------~~~--------------~~~~~~~~~---~--~~~~~~~~~~Sa~~~~gv~~l~~  187 (195)
T 1svi_A          133 YGIPVIVIATKADKIPKGK------WDK--------------HAKVVRQTL---N--IDPEDELILFSSETKKGKDEAWG  187 (195)
T ss_dssp             TTCCEEEEEECGGGSCGGG------HHH--------------HHHHHHHHH---T--CCTTSEEEECCTTTCTTHHHHHH
T ss_pred             cCCCEEEEEECcccCChHH------HHH--------------HHHHHHHHH---c--ccCCCceEEEEccCCCCHHHHHH
Confidence            5689999999999865421      110              001122211   1  12457789999999999999999


Q ss_pred             HHHHHH
Q psy3651         318 AVKNTI  323 (334)
Q Consensus       318 ~v~~~I  323 (334)
                      ++.+.+
T Consensus       188 ~l~~~l  193 (195)
T 1svi_A          188 AIKKMI  193 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.25  E-value=3.3e-12  Score=109.45  Aligned_cols=119  Identities=14%  Similarity=0.075  Sum_probs=82.8

Q ss_pred             eEEEEEeeCcceeeeecCCccccc------cccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         163 TEFTIVISNIPFLFVDVGGQRSQR------RKWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       163 ~~~~~~~~~~~~~i~DvgGq~~~r------~kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ....+.+++..+.+||++|+..++      ..|..|+.  +++++++|+|.+++          .+.   ..++..+.. 
T Consensus        45 ~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~---~~~~~~~~~-  110 (188)
T 2wjg_A           45 KEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL----------ERN---LYLTLQLME-  110 (188)
T ss_dssp             EEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH----------HHH---HHHHHHHHT-
T ss_pred             eEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH----------HHH---HHHHHHHHh-
Confidence            344566678899999999999875      45778885  59999999998875          222   334444433 


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                         .+.|++|++||+|+..++-  ......+                 + .+.         .++.+++|||+++.||.+
T Consensus       111 ---~~~piilv~nK~Dl~~~~~--~~~~~~~-----------------~-~~~---------~~~~~~~~Sa~~~~~v~~  158 (188)
T 2wjg_A          111 ---MGANLLLALNKMDLAKSLG--IEIDVDK-----------------L-EKI---------LGVKVVPLSAAKKMGIEE  158 (188)
T ss_dssp             ---TTCCEEEEEECHHHHHHTT--CCCCHHH-----------------H-HHH---------HTSCEEECBGGGTBSHHH
T ss_pred             ---cCCCEEEEEEhhhcccccc--chHHHHH-----------------H-HHH---------hCCCeEEEEecCCCCHHH
Confidence               4689999999999866431  1111111                 1 111         124689999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy3651         315 VFNAVKNTILHRN  327 (334)
Q Consensus       315 vf~~v~~~I~~~~  327 (334)
                      +|+++.+.+.+..
T Consensus       159 l~~~i~~~~~~~~  171 (188)
T 2wjg_A          159 LKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhcc
Confidence            9999998775543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.23  E-value=2.5e-11  Score=104.13  Aligned_cols=116  Identities=17%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             eCcceeeeecCC----------cccccccccccccCC---CeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         170 SNIPFLFVDVGG----------QRSQRRKWFQCFDSV---TSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       170 ~~~~~~i~DvgG----------q~~~r~kw~~~f~~v---~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .+..+.+||++|          +..++..|..|++++   +++++|+|.++...        ....+...++..      
T Consensus        66 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~--------~~~~~~~~~~~~------  131 (195)
T 3pqc_A           66 VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ--------DSDLMMVEWMKS------  131 (195)
T ss_dssp             ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC--------HHHHHHHHHHHH------
T ss_pred             ECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC--------HHHHHHHHHHHH------
Confidence            356899999999          777888888888766   99999999887411        111122222222      


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                       .+.|++|++||+|+..+.-  ..                  ...+.+.+.+..     ...+.+++|||+++.||.++|
T Consensus       132 -~~~p~i~v~nK~Dl~~~~~--~~------------------~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~  185 (195)
T 3pqc_A          132 -LNIPFTIVLTKMDKVKMSE--RA------------------KKLEEHRKVFSK-----YGEYTIIPTSSVTGEGISELL  185 (195)
T ss_dssp             -TTCCEEEEEECGGGSCGGG--HH------------------HHHHHHHHHHHS-----SCCSCEEECCTTTCTTHHHHH
T ss_pred             -cCCCEEEEEEChhcCChHH--HH------------------HHHHHHHHHHhh-----cCCCceEEEecCCCCCHHHHH
Confidence             2689999999999864321  01                  001112222111     134678999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      +++.+.+.+
T Consensus       186 ~~l~~~l~~  194 (195)
T 3pqc_A          186 DLISTLLKE  194 (195)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhc
Confidence            999987743

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.20  E-value=5.2e-12  Score=111.25  Aligned_cols=75  Identities=19%  Similarity=0.341  Sum_probs=63.9

Q ss_pred             eCcceeeeecCCcccccccccccccC----CCeEEEEEeCC-CccchhhcccccccHHHHHHHHHHHHhhc---CCCCCc
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDS----VTSILFLVSSS-EYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVS  241 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~----v~~iIfv~dls-~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~p  241 (334)
                      .+..+.+||++|++.++..|..|+.+    ++++|||+|++ +.          .++.+...++..+....   ...++|
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p  122 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP----------KKLTTTAEFLVDILSITESSCENGID  122 (218)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT----------TCCHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCCh----------HHHHHHHHHHHHHHhcccccccCCCC
Confidence            56889999999999999999999987    89999999999 65          67777778888877653   236789


Q ss_pred             EEEEEeCCCcchh
Q psy3651         242 FILFLNKTDLLAE  254 (334)
Q Consensus       242 iiL~lNK~Dl~~e  254 (334)
                      ++|++||+|+..+
T Consensus       123 ~ilv~nK~Dl~~~  135 (218)
T 1nrj_B          123 ILIACNKSELFTA  135 (218)
T ss_dssp             EEEEEECTTSTTC
T ss_pred             EEEEEEchHhccc
Confidence            9999999999764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.19  E-value=6.9e-12  Score=126.32  Aligned_cols=112  Identities=18%  Similarity=0.199  Sum_probs=76.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+||++||+.++..+..++++++++|+|+|+++.          .++..+   ...+...  ..+.|++|++||+|
T Consensus        97 ~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~----------~~~~~~---~~~l~~~--~~~~pvilV~NK~D  161 (535)
T 3dpu_A           97 ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD----------SNKHYW---LRHIEKY--GGKSPVIVVMNKID  161 (535)
T ss_dssp             TCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG----------GGHHHH---HHHHHHH--SSSCCEEEEECCTT
T ss_pred             eEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc----------hhHHHH---HHHHHHh--CCCCCEEEEEECCC
Confidence            57899999999999999999999999999999999875          344333   3333332  24689999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++- .....+.                     +.+.      ...+.+++|||+++.||+++|+++.+.+.+
T Consensus       162 l~~~~~-v~~~~~~---------------------~~~~------~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          162 ENPSYN-IEQKKIN---------------------ERFP------AIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             TCTTCC-CCHHHHH---------------------HHCG------GGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             cccccc-cCHHHHH---------------------HHHH------hcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            865421 0111111                     1111      123458999999999999999999987764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.19  E-value=5.6e-11  Score=104.78  Aligned_cols=123  Identities=9%  Similarity=0.073  Sum_probs=78.2

Q ss_pred             eeCcceeeeecCCc----------ccccccccccccC---CCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         169 ISNIPFLFVDVGGQ----------RSQRRKWFQCFDS---VTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       169 ~~~~~~~i~DvgGq----------~~~r~kw~~~f~~---v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      .++..+.+|||+|.          +.++..+..|+.+   ++++|||+|.++.          -. .....+++.+..  
T Consensus        76 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~----------~~-~~~~~~~~~l~~--  142 (223)
T 4dhe_A           76 AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRP----------LT-ELDRRMIEWFAP--  142 (223)
T ss_dssp             TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSC----------CC-HHHHHHHHHHGG--
T ss_pred             CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCC----------CC-HHHHHHHHHHHh--
Confidence            34689999999994          4446667777766   7779999999874          11 122233333322  


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhcc-CCCCCeEEEEEeeecCchHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKR-DEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~-~~~~~i~~~~tsA~d~~nI~~  314 (334)
                        .+.|++||+||+|+....-      +.              ...+.+.+.+..... .....+.+++|||+++.||.+
T Consensus       143 --~~~p~i~v~nK~Dl~~~~~------~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~  200 (223)
T 4dhe_A          143 --TGKPIHSLLTKCDKLTRQE------SI--------------NALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDD  200 (223)
T ss_dssp             --GCCCEEEEEECGGGSCHHH------HH--------------HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHH
T ss_pred             --cCCCEEEEEeccccCChhh------HH--------------HHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHH
Confidence              4679999999999865421      10              011122222221100 112457899999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         315 VFNAVKNTILHR  326 (334)
Q Consensus       315 vf~~v~~~I~~~  326 (334)
                      +|+++.+.+...
T Consensus       201 l~~~l~~~~~~~  212 (223)
T 4dhe_A          201 AHALIESWLRPA  212 (223)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHhcCcc
Confidence            999999877543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.17  E-value=9.7e-12  Score=106.40  Aligned_cols=117  Identities=17%  Similarity=0.186  Sum_probs=71.8

Q ss_pred             ceeeeecCC-----------cccccccccccccC-CCeEEEEEeCCCccchhhcccccccHHHHH-------------HH
Q psy3651         173 PFLFVDVGG-----------QRSQRRKWFQCFDS-VTSILFLVSSSEYDQTLVEDRRTNRLHESR-------------NI  227 (334)
Q Consensus       173 ~~~i~DvgG-----------q~~~r~kw~~~f~~-v~~iIfv~dls~~d~~l~ed~~~nrl~esl-------------~l  227 (334)
                      .+.+||++|           |+.++..|..|+.+ ++++++|+++.+.          .++.+..             .+
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~----------~s~~~~~~~~~~~~~~~~~~~~  114 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG----------KAAPEIIKRWEKRGEIPIDVEF  114 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEET----------THHHHHHHHHHHTTCCCHHHHH
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcc----------hhhhhHHHhhhccCccHHHHHH
Confidence            789999999           78888889999876 6655555544443          2222221             12


Q ss_pred             HHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeee
Q psy3651         228 FDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAV  307 (334)
Q Consensus       228 f~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~  307 (334)
                      +..+..    .+.|++|++||+|+..++-                     +.+. .+.+.+ +... ......+++|||+
T Consensus       115 ~~~~~~----~~~piilv~nK~Dl~~~~~---------------------~~~~-~~~~~~-~~~~-~~~~~~~~~~Sa~  166 (190)
T 2cxx_A          115 YQFLRE----LDIPTIVAVNKLDKIKNVQ---------------------EVIN-FLAEKF-EVPL-SEIDKVFIPISAK  166 (190)
T ss_dssp             HHHHHH----TTCCEEEEEECGGGCSCHH---------------------HHHH-HHHHHH-TCCG-GGHHHHEEECCTT
T ss_pred             HHHHHh----cCCceEEEeehHhccCcHH---------------------HHHH-HHHHHh-hhhh-hccCCcEEEEecC
Confidence            222221    4689999999999865420                     0111 111111 1000 0002347899999


Q ss_pred             cCchHHHHHHHHHHHHHHHh
Q psy3651         308 DTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       308 d~~nI~~vf~~v~~~I~~~~  327 (334)
                      ++.||+++|+++.+.+.+..
T Consensus       167 ~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          167 FGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             TCTTHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHhcchhh
Confidence            99999999999999887643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.16  E-value=5.6e-11  Score=108.91  Aligned_cols=119  Identities=14%  Similarity=0.088  Sum_probs=84.2

Q ss_pred             cceeEEEEEeeCcceeeeecCCcccccccc------cccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         160 KGITEFTIVISNIPFLFVDVGGQRSQRRKW------FQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       160 ~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw------~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      +......+..++..+.+||++|+.+++..|      ..|+  .+++++|+|+|.++.          .+   .+.++.++
T Consensus        40 v~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~----------~~---~~~~~~~l  106 (258)
T 3a1s_A           40 VEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP----------EQ---SLYLLLEI  106 (258)
T ss_dssp             CEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC----------HH---HHHHHHHH
T ss_pred             EEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch----------hh---HHHHHHHH
Confidence            333445566668899999999999988765      5666  589999999999986          22   23455555


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                      ..    .+.|++|++||+|+..++-  .......                  +.+.         .++.+++|||+++.|
T Consensus       107 ~~----~~~pvilv~NK~Dl~~~~~--i~~~~~~------------------l~~~---------lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A          107 LE----MEKKVILAMTAIDEAKKTG--MKIDRYE------------------LQKH---------LGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HT----TTCCEEEEEECHHHHHHTT--CCBCHHH------------------HHHH---------HCSCEEECCTTTCTT
T ss_pred             Hh----cCCCEEEEEECcCCCCccc--hHHHHHH------------------HHHH---------cCCCEEEEEeeCCcC
Confidence            44    3689999999999866431  1111111                  1111         135689999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTIL  324 (334)
Q Consensus       312 I~~vf~~v~~~I~  324 (334)
                      |.++|+++.+.+.
T Consensus       154 i~el~~~i~~~~~  166 (258)
T 3a1s_A          154 LEELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.11  E-value=8e-11  Score=116.31  Aligned_cols=126  Identities=13%  Similarity=0.183  Sum_probs=88.2

Q ss_pred             EEEEEeeCcceeeeecCC----------cccccccccc-cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGG----------QRSQRRKWFQ-CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgG----------q~~~r~kw~~-~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...+..++.++++|||+|          |+.++..+.. +++.++++|+|+|.++.           -......++..+.
T Consensus       235 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~-----------~~~~~~~~~~~~~  303 (456)
T 4dcu_A          235 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG-----------IIEQDKRIAGYAH  303 (456)
T ss_dssp             SEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC-----------CCHHHHHHHHHHH
T ss_pred             EEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCC-----------cCHHHHHHHHHHH
Confidence            345666778999999999          6766666654 78999999999999873           1223334444443


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.|++|++||+|+..++-                  ...+.+.+++++.+..+     ..+.+++|||+++.||
T Consensus       304 ~----~~~~~ilv~NK~Dl~~~~~------------------~~~~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~gv  356 (456)
T 4dcu_A          304 E----AGKAVVIVVNKWDAVDKDE------------------STMKEFEENIRDHFQFL-----DYAPILFMSALTKKRI  356 (456)
T ss_dssp             H----TTCEEEEEEECGGGSCCCS------------------SHHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTG
T ss_pred             H----cCCCEEEEEEChhcCCCch------------------HHHHHHHHHHHHhcccC-----CCCCEEEEcCCCCcCH
Confidence            3    4689999999999865321                  11233444555543222     2356899999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy3651         313 KIVFNAVKNTILHRN  327 (334)
Q Consensus       313 ~~vf~~v~~~I~~~~  327 (334)
                      .++|+++.+.+.+..
T Consensus       357 ~~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          357 HTLMPAIIKASENHS  371 (456)
T ss_dssp             GGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999998876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.10  E-value=3.4e-11  Score=110.29  Aligned_cols=115  Identities=10%  Similarity=0.017  Sum_probs=80.9

Q ss_pred             eeEEEEEeeCcceeeeecCCcccccc----------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651         162 ITEFTIVISNIPFLFVDVGGQRSQRR----------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD  229 (334)
Q Consensus       162 i~~~~~~~~~~~~~i~DvgGq~~~r~----------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~  229 (334)
                      .....+.+++..+.+||++|+.+.+.          .+..|+  ++++++|+|+|.++.          .+.   +.+..
T Consensus        38 ~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~----------~~~---~~l~~  104 (256)
T 3iby_A           38 KKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL----------ERH---LYLTS  104 (256)
T ss_dssp             EEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH----------HHH---HHHHH
T ss_pred             EEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc----------hhH---HHHHH
Confidence            44556677788999999999998775          566777  899999999999885          222   23333


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651         230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT  309 (334)
Q Consensus       230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~  309 (334)
                      .+..    .+.|++|++||+|+...+-  ....+..                  +.+.         .++.++.|||+++
T Consensus       105 ~l~~----~~~pvilv~NK~Dl~~~~~--~~~~~~~------------------l~~~---------lg~~vi~~SA~~g  151 (256)
T 3iby_A          105 QLFE----LGKPVVVALNMMDIAEHRG--ISIDTEK------------------LESL---------LGCSVIPIQAHKN  151 (256)
T ss_dssp             HHTT----SCSCEEEEEECHHHHHHTT--CEECHHH------------------HHHH---------HCSCEEECBGGGT
T ss_pred             HHHH----cCCCEEEEEEChhcCCcCC--cHHHHHH------------------HHHH---------cCCCEEEEECCCC
Confidence            3322    3689999999999876532  1111111                  1111         1356899999999


Q ss_pred             chHHHHHHHHHHH
Q psy3651         310 ENIKIVFNAVKNT  322 (334)
Q Consensus       310 ~nI~~vf~~v~~~  322 (334)
                      .||.++|+++.+.
T Consensus       152 ~gi~el~~~i~~~  164 (256)
T 3iby_A          152 IGIPALQQSLLHC  164 (256)
T ss_dssp             BSHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.08  E-value=6.8e-11  Score=109.14  Aligned_cols=116  Identities=14%  Similarity=0.067  Sum_probs=79.5

Q ss_pred             eeEEEEEeeCcceeeeecCCcccccc----------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651         162 ITEFTIVISNIPFLFVDVGGQRSQRR----------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD  229 (334)
Q Consensus       162 i~~~~~~~~~~~~~i~DvgGq~~~r~----------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~  229 (334)
                      .....+...+..+.+||++|+..++.          .|..|+  ++++++|+|+|.++.          .+..   .+..
T Consensus        40 ~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~----------~~~~---~~~~  106 (274)
T 3i8s_A           40 RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL----------ERNL---YLTL  106 (274)
T ss_dssp             EEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH----------HHHH---HHHH
T ss_pred             EEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh----------HHHH---HHHH
Confidence            34455666788999999999998773          344554  799999999999885          3332   3333


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651         230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT  309 (334)
Q Consensus       230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~  309 (334)
                      .+...    +.|+++++||+|+..++-  ....+..                  +.+.         .++.++.|||+++
T Consensus       107 ~l~~~----~~p~ivv~NK~Dl~~~~~--~~~~~~~------------------l~~~---------lg~~~i~~SA~~g  153 (274)
T 3i8s_A          107 QLLEL----GIPCIVALNMLDIAEKQN--IRIEIDA------------------LSAR---------LGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHHH----TCCEEEEEECHHHHHHTT--EEECHHH------------------HHHH---------HTSCEEECCCGGG
T ss_pred             HHHhc----CCCEEEEEECccchhhhh--HHHHHHH------------------HHHh---------cCCCEEEEEcCCC
Confidence            33332    689999999999876532  1111111                  1111         1356899999999


Q ss_pred             chHHHHHHHHHHHH
Q psy3651         310 ENIKIVFNAVKNTI  323 (334)
Q Consensus       310 ~nI~~vf~~v~~~I  323 (334)
                      .||.++|+++.+.+
T Consensus       154 ~gi~el~~~i~~~~  167 (274)
T 3i8s_A          154 RGIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.08  E-value=3.8e-10  Score=105.89  Aligned_cols=120  Identities=15%  Similarity=0.125  Sum_probs=80.3

Q ss_pred             EEEEEee-CcceeeeecCCccccc----------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVIS-NIPFLFVDVGGQRSQR----------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~-~~~~~i~DvgGq~~~r----------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...+..+ +..+.+|||+|+...+          ..+..++.++|++|||+|.++.          ....+...|++.+.
T Consensus        50 ~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~----------~~~~~~~~~~~~l~  119 (308)
T 3iev_A           50 LGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEG----------WRPRDEEIYQNFIK  119 (308)
T ss_dssp             EEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTB----------SCHHHHHHHHHHTG
T ss_pred             EEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCC----------CCchhHHHHHHHHH
Confidence            3344556 7889999999997655          6678889999999999999985          33333222233333


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.|++|++||+|+...+-  ..   ..              ..+.+.+.+       .....++.+||+++.||
T Consensus       120 ~----~~~pvilV~NK~Dl~~~~~--~~---~~--------------~~~~l~~~~-------~~~~~i~~vSA~~g~gv  169 (308)
T 3iev_A          120 P----LNKPVIVVINKIDKIGPAK--NV---LP--------------LIDEIHKKH-------PELTEIVPISALKGANL  169 (308)
T ss_dssp             G----GCCCEEEEEECGGGSSSGG--GG---HH--------------HHHHHHHHC-------TTCCCEEECBTTTTBSH
T ss_pred             h----cCCCEEEEEECccCCCCHH--HH---HH--------------HHHHHHHhc-------cCCCeEEEEeCCCCCCH
Confidence            2    4689999999999862211  11   10              011111111       12245889999999999


Q ss_pred             HHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTI  323 (334)
Q Consensus       313 ~~vf~~v~~~I  323 (334)
                      .++|+++.+.+
T Consensus       170 ~~L~~~l~~~l  180 (308)
T 3iev_A          170 DELVKTILKYL  180 (308)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhC
Confidence            99999988755

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.07  E-value=5.6e-11  Score=109.90  Aligned_cols=107  Identities=19%  Similarity=0.176  Sum_probs=76.6

Q ss_pred             CcceeeeecCCccccc------cccccccc--CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         171 NIPFLFVDVGGQRSQR------RKWFQCFD--SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r------~kw~~~f~--~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      +..+.+||++|+.+++      ..+..|+.  +++++|+|+|.++.          .+   .+.+..++..    .+.|+
T Consensus        48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~----------e~---~~~~~~~l~~----~~~p~  110 (272)
T 3b1v_A           48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL----------ER---NLYLTTQLIE----TGIPV  110 (272)
T ss_dssp             CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH----------HH---HHHHHHHHHH----TCSCE
T ss_pred             CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch----------Hh---HHHHHHHHHh----cCCCE
Confidence            7889999999999887      46677876  69999999999885          22   2344445543    46899


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +|++||+|+..++-  .......                  +.+.         .++.++.|||+++.||.++|+++.+.
T Consensus       111 ilv~NK~Dl~~~~~--~~~~~~~------------------l~~~---------lg~~vi~~SA~~g~gi~el~~~i~~~  161 (272)
T 3b1v_A          111 TIALNMIDVLDGQG--KKINVDK------------------LSYH---------LGVPVVATSALKQTGVDQVVKKAAHT  161 (272)
T ss_dssp             EEEEECHHHHHHTT--CCCCHHH------------------HHHH---------HTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred             EEEEEChhhCCcCC--cHHHHHH------------------HHHH---------cCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            99999999866431  1111111                  1111         13568999999999999999999775


Q ss_pred             H
Q psy3651         323 I  323 (334)
Q Consensus       323 I  323 (334)
                      +
T Consensus       162 ~  162 (272)
T 3b1v_A          162 T  162 (272)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.03  E-value=2.9e-10  Score=104.36  Aligned_cols=119  Identities=20%  Similarity=0.082  Sum_probs=86.1

Q ss_pred             eeEEEEEeeCcceeeeecCCcccccc------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         162 ITEFTIVISNIPFLFVDVGGQRSQRR------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       162 i~~~~~~~~~~~~~i~DvgGq~~~r~------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      .....+..++..+.+||++|+..+..      .+..|+  .+++++|+|+|.++.             ...+.++.++..
T Consensus        40 ~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~-------------~~~~~~~~~~~~  106 (271)
T 3k53_A           40 KKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL-------------MRNLFLTLELFE  106 (271)
T ss_dssp             EEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH-------------HHHHHHHHHHHH
T ss_pred             eeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc-------------hhhHHHHHHHHh
Confidence            34556667788899999999998877      688887  789999999999884             234555666554


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .   ...|+++++||+|+..++-  ......                  -+.++         .++.++.|||+++.||.
T Consensus       107 ~---~~~p~ilv~NK~Dl~~~~~--~~~~~~------------------~l~~~---------lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A          107 M---EVKNIILVLNKFDLLKKKG--AKIDIK------------------KMRKE---------LGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             T---TCCSEEEEEECHHHHHHHT--CCCCHH------------------HHHHH---------HSSCEEECBGGGTBTHH
T ss_pred             c---CCCCEEEEEEChhcCcccc--cHHHHH------------------HHHHH---------cCCcEEEEEeCCCCCHH
Confidence            2   2389999999999876432  111111                  11111         13568899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         314 IVFNAVKNTILH  325 (334)
Q Consensus       314 ~vf~~v~~~I~~  325 (334)
                      ++|+++.+.+.+
T Consensus       155 ~l~~~i~~~~~~  166 (271)
T 3k53_A          155 ELKRMIALMAEG  166 (271)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.03  E-value=2.1e-10  Score=112.73  Aligned_cols=125  Identities=14%  Similarity=0.188  Sum_probs=85.0

Q ss_pred             EEEEEeeCcceeeeecCCcccc----------ccccc-ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQ----------RRKWF-QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~----------r~kw~-~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      ...+..++..+.+|||+|++..          +..+. .+++.++++|+|+|+++.          ... +.+.++..+.
T Consensus       215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~----------~s~-~~~~~~~~~~  283 (436)
T 2hjg_A          215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEG----------IIE-QDKRIAGYAH  283 (436)
T ss_dssp             CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTC----------CCH-HHHHHHHHHH
T ss_pred             EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcC----------CcH-HHHHHHHHHH
Confidence            4456677888999999999542          22333 478899999999999985          222 3345555554


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      .    .+.|++|++||+|+..++-    .              ..+...+.+.+.+..+     ..+.+++|||++|.||
T Consensus       284 ~----~~~~iiiv~NK~Dl~~~~~----~--------------~~~~~~~~~~~~l~~~-----~~~~~~~~SA~tg~~v  336 (436)
T 2hjg_A          284 E----AGKAVVIVVNKWDAVDKDE----S--------------TMKEFEENIRDHFQFL-----DYAPILFMSALTKKRI  336 (436)
T ss_dssp             H----TTCEEEEEEECGGGSCCCT----T--------------HHHHHHHHHHHHCGGG-----TTSCEEECCTTTCTTG
T ss_pred             H----cCCcEEEEEECccCCCcch----H--------------HHHHHHHHHHHhcccC-----CCCCEEEEecccCCCH
Confidence            3    4689999999999865321    0              1112222333333221     2456899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILHR  326 (334)
Q Consensus       313 ~~vf~~v~~~I~~~  326 (334)
                      .++|+.+.+.+.+.
T Consensus       337 ~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          337 HTLMPAIIKASENH  350 (436)
T ss_dssp             GGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999887654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.02  E-value=2.3e-10  Score=98.43  Aligned_cols=75  Identities=19%  Similarity=0.341  Sum_probs=63.4

Q ss_pred             eCcceeeeecCCcccccccccccccC----CCeEEEEEeCC-CccchhhcccccccHHHHHHHHHHHHhhc---CCCCCc
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDS----VTSILFLVSSS-EYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVS  241 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~----v~~iIfv~dls-~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~p  241 (334)
                      .+..+.+||++|+..++..|..++.+    ++++|||+|++ +.          .++.+...++..++...   ...+.|
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p  158 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP----------KKLTTTAEFLVDILSITESSCENGID  158 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH----------HHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc----------hhHHHHHHHHHHHHhhhhhccccCCC
Confidence            67899999999999999999999987    89999999999 65          67777777887777643   235789


Q ss_pred             EEEEEeCCCcchh
Q psy3651         242 FILFLNKTDLLAE  254 (334)
Q Consensus       242 iiL~lNK~Dl~~e  254 (334)
                      ++|++||+|+..+
T Consensus       159 ~ilv~nK~Dl~~~  171 (193)
T 2ged_A          159 ILIACNKSELFTA  171 (193)
T ss_dssp             EEEEEECTTSTTC
T ss_pred             EEEEEEchHhcCC
Confidence            9999999998764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.99  E-value=2.1e-10  Score=115.47  Aligned_cols=117  Identities=15%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ++.++.+|||+|++.+...|..++..++++|+|+|.++-           .+.+....+..+..    .+.|++|++||+
T Consensus        50 ~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg-----------~~~qt~e~l~~~~~----~~vPiIVViNKi  114 (537)
T 3izy_P           50 SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG-----------VMKQTVESIQHAKD----AHVPIVLAINKC  114 (537)
T ss_dssp             CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC-----------CCHHHHHHHHHHHT----TTCCEEECCBSG
T ss_pred             CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC-----------ccHHHHHHHHHHHH----cCCcEEEEEecc
Confidence            456899999999999999999999999999999999983           44555555555443    467999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+...........+..+                      ..........+.++++||+++.||.++|+++...+
T Consensus       115 Dl~~~~~~~v~~~l~~~----------------------~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          115 DKAEADPEKVKKELLAY----------------------DVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             GGTTTSCCSSSSHHHHT----------------------TSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHhh----------------------hhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            98654220001111111                      00000111346789999999999999999988754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.99  E-value=8.4e-10  Score=109.87  Aligned_cols=117  Identities=20%  Similarity=0.311  Sum_probs=80.7

Q ss_pred             ceeEEEEEeeCcceeeeecCCcc-ccc--------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         161 GITEFTIVISNIPFLFVDVGGQR-SQR--------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       161 Gi~~~~~~~~~~~~~i~DvgGq~-~~r--------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      .+....+.+++..+.+|||+|++ ...        +.+..+++.++++|+|+|+++.          .... ..++++.+
T Consensus       280 d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~----------~s~~-~~~il~~l  348 (482)
T 1xzp_A          280 DVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP----------LDEE-DRKILERI  348 (482)
T ss_dssp             CSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC----------CCHH-HHHHHHHH
T ss_pred             eeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCC----------CCHH-HHHHHHHh
Confidence            34455667778899999999998 433        2345688999999999999986          2222 23344332


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                            .+.|+++++||+|+..+ +  ....+.+                 +     .      ...+.+++|||++++|
T Consensus       349 ------~~~piivV~NK~DL~~~-~--~~~~~~~-----------------~-----~------~~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          349 ------KNKRYLVVINKVDVVEK-I--NEEEIKN-----------------K-----L------GTDRHMVKISALKGEG  391 (482)
T ss_dssp             ------TTSSEEEEEEECSSCCC-C--CHHHHHH-----------------H-----H------TCSTTEEEEEGGGTCC
T ss_pred             ------cCCCEEEEEECcccccc-c--CHHHHHH-----------------H-----h------cCCCcEEEEECCCCCC
Confidence                  36799999999998542 2  1111111                 1     1      1124578999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTILH  325 (334)
Q Consensus       312 I~~vf~~v~~~I~~  325 (334)
                      |+++|+++.+.+..
T Consensus       392 i~eL~~~l~~~~~~  405 (482)
T 1xzp_A          392 LEKLEESIYRETQE  405 (482)
T ss_dssp             HHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999997663

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.98  E-value=1.3e-09  Score=108.26  Aligned_cols=120  Identities=16%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             ceeEEEEEeeCcceeeeecCCcccccccc--------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         161 GITEFTIVISNIPFLFVDVGGQRSQRRKW--------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       161 Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw--------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      .+....+.+++..+.+|||+|++..+..|        ..++++++++|+|+|.++....       ..+.+...+++.+ 
T Consensus       270 d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-------~~~~~~~~~l~~l-  341 (476)
T 3gee_A          270 DYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD-------DELTEIRELKAAH-  341 (476)
T ss_dssp             ---CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSG-------GGHHHHHHHHHHC-
T ss_pred             EEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch-------hhhHHHHHHHHhc-
Confidence            34455677788999999999998866443        5578999999999999986221       1223444444332 


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                           .+.|+++|+||+|+.....    ....                  -+    ....     ...++.|||+++.||
T Consensus       342 -----~~~piIvV~NK~Dl~~~~~----~~~~------------------~l----~~~~-----~~~~i~vSAktg~GI  385 (476)
T 3gee_A          342 -----PAAKFLTVANKLDRAANAD----ALIR------------------AI----ADGT-----GTEVIGISALNGDGI  385 (476)
T ss_dssp             -----TTSEEEEEEECTTSCTTTH----HHHH------------------HH----HHHH-----TSCEEECBTTTTBSH
T ss_pred             -----CCCCEEEEEECcCCCCccc----hhHH------------------HH----HhcC-----CCceEEEEECCCCCH
Confidence                 3689999999999865421    0000                  01    1110     134789999999999


Q ss_pred             HHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTIL  324 (334)
Q Consensus       313 ~~vf~~v~~~I~  324 (334)
                      .++|+++.+.+.
T Consensus       386 ~eL~~~i~~~~~  397 (476)
T 3gee_A          386 DTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998876

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.97  E-value=2.1e-09  Score=108.16  Aligned_cols=81  Identities=12%  Similarity=0.194  Sum_probs=66.0

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      .|+......+..++..+.+|||+|+..++..|..+++.++++|+|+|.++.           ...+...+|..+..    
T Consensus        68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g-----------~~~~t~~~~~~~~~----  132 (528)
T 3tr5_A           68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKG-----------VEPRTIKLMEVCRL----  132 (528)
T ss_dssp             CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC-----------SCHHHHHHHHHHHT----
T ss_pred             eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCC-----------CCHHHHHHHHHHHH----
Confidence            355555667778889999999999999999999999999999999999984           33455566665543    


Q ss_pred             CCCcEEEEEeCCCcch
Q psy3651         238 RNVSFILFLNKTDLLA  253 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~  253 (334)
                      .+.|+++|+||+|+..
T Consensus       133 ~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A          133 RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TTCCEEEEEECTTSCC
T ss_pred             cCCCEEEEEeCCCCcc
Confidence            4689999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.97  E-value=9e-10  Score=108.25  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=78.6

Q ss_pred             EEEEEeeCcceeeeecCCccc---------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         164 EFTIVISNIPFLFVDVGGQRS---------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~---------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ...+.+.+..+.+|||||+..         .++.|..+++++++||||+|.++.-         ....+   .+..++..
T Consensus        41 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~---------~~~d~---~i~~~l~~  108 (439)
T 1mky_A           41 QDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGI---------TKEDE---SLADFLRK  108 (439)
T ss_dssp             EEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCC---------CHHHH---HHHHHHHH
T ss_pred             eEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCC---------CHHHH---HHHHHHHH
Confidence            455666788899999999874         3567888999999999999987631         11111   12222222


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                         .+.|++|++||+|+... .   ....                     ...|..+.   -  -.++.+||++|.||.+
T Consensus       109 ---~~~p~ilv~NK~D~~~~-~---~~~~---------------------~~~~~~lg---~--~~~~~iSA~~g~gv~~  155 (439)
T 1mky_A          109 ---STVDTILVANKAENLRE-F---EREV---------------------KPELYSLG---F--GEPIPVSAEHNINLDT  155 (439)
T ss_dssp             ---HTCCEEEEEESCCSHHH-H---HHHT---------------------HHHHGGGS---S--CSCEECBTTTTBSHHH
T ss_pred             ---cCCCEEEEEeCCCCccc-c---HHHH---------------------HHHHHhcC---C--CCEEEEeccCCCCHHH
Confidence               35799999999998543 1   0011                     00111111   0  1367899999999999


Q ss_pred             HHHHHHHHHHH
Q psy3651         315 VFNAVKNTILH  325 (334)
Q Consensus       315 vf~~v~~~I~~  325 (334)
                      +|+++.+.+..
T Consensus       156 L~~~i~~~l~~  166 (439)
T 1mky_A          156 MLETIIKKLEE  166 (439)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhccc
Confidence            99999988764

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.95  E-value=2.3e-09  Score=105.47  Aligned_cols=138  Identities=15%  Similarity=0.147  Sum_probs=84.5

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+.+....+...+..+.+|||+|++.+.+.+..+++.+|++|+|+|.++-..   |. ..+...+....+..+..  
T Consensus        79 ~GiTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~---e~-~~~~~~qt~e~l~~~~~--  152 (439)
T 3j2k_7           79 KGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEF---ET-GFEKGGQTREHAMLAKT--  152 (439)
T ss_pred             cCceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCcc---cc-ccCCCchHHHHHHHHHH--
Confidence            3456666666777788999999999999999999999999999999999987411   00 00001122222222221  


Q ss_pred             CCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         236 IFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       236 ~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                        .+.| ++|++||+|+.....  ....+              +...+-+...+..+.......+.++.+||++|.||.+
T Consensus       153 --~~v~~iIvviNK~Dl~~~~~--~~~~~--------------~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~  214 (439)
T 3j2k_7          153 --AGVKHLIVLINKMDDPTVNW--SNERY--------------EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKE  214 (439)
T ss_pred             --cCCCeEEEEeecCCCcccch--HHHHH--------------HHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccc
Confidence              3456 999999999853211  00000              1111112222222222212357899999999999998


Q ss_pred             HHH
Q psy3651         315 VFN  317 (334)
Q Consensus       315 vf~  317 (334)
                      +++
T Consensus       215 l~~  217 (439)
T 3j2k_7          215 QSD  217 (439)
T ss_pred             ccc
Confidence            654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.95  E-value=6.9e-10  Score=105.85  Aligned_cols=123  Identities=13%  Similarity=0.138  Sum_probs=81.8

Q ss_pred             EEEeeC-cceeeeecCCccc----cccccccccc---CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cC
Q psy3651         166 TIVISN-IPFLFVDVGGQRS----QRRKWFQCFD---SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VI  236 (334)
Q Consensus       166 ~~~~~~-~~~~i~DvgGq~~----~r~kw~~~f~---~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~  236 (334)
                      .+.+.+ ..+.+||++|+..    .+..+..|++   .++++|+|+|+++.+.       .+.+.+...+..++... +.
T Consensus       199 ~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~-------~~~~~~~~~~~~eL~~~~~~  271 (342)
T 1lnz_A          199 MVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEG-------RDPYDDYLTINQELSEYNLR  271 (342)
T ss_dssp             EEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSC-------CCHHHHHHHHHHHHHHSCSS
T ss_pred             EEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccc-------cChHHHHHHHHHHHHHhhhh
Confidence            355554 7899999999643    3445555654   5999999999998310       04455555555665543 23


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..++-  ....+                     .+.   +    ...+.++.+||++++||+++|
T Consensus       272 l~~~p~ilV~NK~Dl~~~~e--~~~~l---------------------~~~---l----~~~~~v~~iSA~tg~gi~eL~  321 (342)
T 1lnz_A          272 LTERPQIIVANKMDMPEAAE--NLEAF---------------------KEK---L----TDDYPVFPISAVTREGLRELL  321 (342)
T ss_dssp             TTTSCBCBEEECTTSTTHHH--HHHHH---------------------HHH---C----CSCCCBCCCSSCCSSTTHHHH
T ss_pred             hcCCCEEEEEECccCCCCHH--HHHHH---------------------HHH---h----hcCCCEEEEECCCCcCHHHHH
Confidence            46789999999999865421  01111                     111   1    111457899999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      .++.+.+.+
T Consensus       322 ~~l~~~l~~  330 (342)
T 1lnz_A          322 FEVANQLEN  330 (342)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHHhh
Confidence            999987754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.95  E-value=7.5e-09  Score=98.91  Aligned_cols=128  Identities=19%  Similarity=0.260  Sum_probs=86.4

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccccc---------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQR---------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD  229 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r---------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~  229 (334)
                      |.++....+..++..+.+|||+|+....         .....+...++++|+|+|+++...        -.+.+...++.
T Consensus       201 t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~--------~~~~~~~~~~~  272 (357)
T 2e87_A          201 TRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCG--------FPLEEQIHLFE  272 (357)
T ss_dssp             SSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTS--------SCHHHHHHHHH
T ss_pred             eeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCcccc--------CCHHHHHHHHH
Confidence            4444445555567889999999996532         112234557999999999988510        15566677777


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651         230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT  309 (334)
Q Consensus       230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~  309 (334)
                      .+....  .+.|+++++||+|+....-      +              +.+.+++.          ...+.++++||++|
T Consensus       273 ~i~~~~--~~~piilV~NK~Dl~~~~~------~--------------~~~~~~~~----------~~~~~~~~iSA~~g  320 (357)
T 2e87_A          273 EVHGEF--KDLPFLVVINKIDVADEEN------I--------------KRLEKFVK----------EKGLNPIKISALKG  320 (357)
T ss_dssp             HHHHHT--TTSCEEEEECCTTTCCHHH------H--------------HHHHHHHH----------HTTCCCEECBTTTT
T ss_pred             HHHHhc--CCCCEEEEEECcccCChHH------H--------------HHHHHHHH----------hcCCCeEEEeCCCC
Confidence            776532  3789999999999865421      1              11111211          12355789999999


Q ss_pred             chHHHHHHHHHHHHHHH
Q psy3651         310 ENIKIVFNAVKNTILHR  326 (334)
Q Consensus       310 ~nI~~vf~~v~~~I~~~  326 (334)
                      +||.++|+++.+.+...
T Consensus       321 ~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999887643

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.94  E-value=6.8e-10  Score=108.81  Aligned_cols=119  Identities=13%  Similarity=0.178  Sum_probs=81.5

Q ss_pred             ecceeEEEEEeeCc-ceeeeecCCccccccc-------ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNI-PFLFVDVGGQRSQRRK-------WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       159 T~Gi~~~~~~~~~~-~~~i~DvgGq~~~r~k-------w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      |+......+.+.+. ++.+|||+|+..+...       +..++.+++++|+|+|.+..          ....+.   +..
T Consensus        69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~----------~~~~~~---l~~  135 (423)
T 3qq5_A           69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT----------PYEDDV---VNL  135 (423)
T ss_dssp             -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC----------HHHHHH---HHH
T ss_pred             eeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh----------HHHHHH---HHH
Confidence            34444555666555 8999999999877654       45689999999999998332          222333   333


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      +..    .+.|+++|+||+|+..+..  .  ...+                        .+  .....+.++++||+++.
T Consensus       136 l~~----~~~piIvV~NK~Dl~~~~~--~--~~~~------------------------~l--~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          136 FKE----MEIPFVVVVNKIDVLGEKA--E--ELKG------------------------LY--ESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             HHH----TTCCEEEECCCCTTTTCCC--T--HHHH------------------------HS--SCCTTCCCCCCSSCCTT
T ss_pred             HHh----cCCCEEEEEeCcCCCCccH--H--HHHH------------------------HH--HHHcCCCEEEEECCCCC
Confidence            333    2689999999999876532  1  1111                        11  11234678899999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNTIL  324 (334)
Q Consensus       311 nI~~vf~~v~~~I~  324 (334)
                      ||+++|+++.+.+.
T Consensus       182 gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          182 GFDDIGKTISEILP  195 (423)
T ss_dssp             STTTHHHHHHHHSC
T ss_pred             CHHHHHHHHHHhhh
Confidence            99999999998773

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.94  E-value=4.9e-09  Score=98.13  Aligned_cols=114  Identities=11%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             EEeeCcceeeeecCCcccc--------cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         167 IVISNIPFLFVDVGGQRSQ--------RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       167 ~~~~~~~~~i~DvgGq~~~--------r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      +..++..+.+|||+|+...        ...+..++++++++|||+|.++..          ... ...+++.+ ... ..
T Consensus        50 ~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~----------~~~-~~~i~~~l-~~~-~~  116 (301)
T 1wf3_A           50 LTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPP----------TPE-DELVARAL-KPL-VG  116 (301)
T ss_dssp             EEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCC----------CHH-HHHHHHHH-GGG-TT
T ss_pred             EEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCC----------ChH-HHHHHHHH-Hhh-cC
Confidence            3446788999999999873        445667889999999999998751          111 11222333 221 24


Q ss_pred             CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHH
Q psy3651         239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNA  318 (334)
Q Consensus       239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~  318 (334)
                      +.|++||+||+|+..+.-  .   +.+                 .+.    .+    .....++.+||+++.|+.++|++
T Consensus       117 ~~p~ilV~NK~Dl~~~~~--~---~~~-----------------~~~----~~----~~~~~~~~iSA~~g~gv~~l~~~  166 (301)
T 1wf3_A          117 KVPILLVGNKLDAAKYPE--E---AMK-----------------AYH----EL----LPEAEPRMLSALDERQVAELKAD  166 (301)
T ss_dssp             TSCEEEEEECGGGCSSHH--H---HHH-----------------HHH----HT----STTSEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEECcccCCchH--H---HHH-----------------HHH----Hh----cCcCcEEEEeCCCCCCHHHHHHH
Confidence            789999999999864311  0   111                 111    11    11235789999999999999998


Q ss_pred             HHHHH
Q psy3651         319 VKNTI  323 (334)
Q Consensus       319 v~~~I  323 (334)
                      +.+.+
T Consensus       167 l~~~l  171 (301)
T 1wf3_A          167 LLALM  171 (301)
T ss_dssp             HHTTC
T ss_pred             HHHhc
Confidence            87643

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.92  E-value=2.6e-09  Score=106.33  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=85.2

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..|+.+....+.+++..+.+||++|++.+.+.+..++..+|++|+|+|.++-           .+.++.+.+..+ ..  
T Consensus        58 GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~-~~--  123 (482)
T 1wb1_A           58 GITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLIL-DH--  123 (482)
T ss_dssp             ------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHH-HH--
T ss_pred             ccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCC-----------ccHHHHHHHHHH-HH--
Confidence            3455555556777788999999999999999999999999999999999873           222333333222 21  


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                       .+.|+++++||+|+..+..   ...+             .+.+.+++..    ..  .-..+.++.+||+++.||.+++
T Consensus       124 -~~ip~IvviNK~Dl~~~~~---~~~~-------------~~~l~~~l~~----~~--~~~~~~ii~vSA~~g~gI~~L~  180 (482)
T 1wb1_A          124 -FNIPIIVVITKSDNAGTEE---IKRT-------------EMIMKSILQS----TH--NLKNSSIIPISAKTGFGVDELK  180 (482)
T ss_dssp             -TTCCBCEEEECTTSSCHHH---HHHH-------------HHHHHHHHHH----SS--SGGGCCEEECCTTTCTTHHHHH
T ss_pred             -cCCCEEEEEECCCcccchh---HHHH-------------HHHHHHHHhh----hc--ccccceEEEEECcCCCCHHHHH
Confidence             3578899999999865321   0000             1111122221    10  0013568899999999999999


Q ss_pred             HHHHHHHH
Q psy3651         317 NAVKNTIL  324 (334)
Q Consensus       317 ~~v~~~I~  324 (334)
                      +++.+.+-
T Consensus       181 ~~L~~~i~  188 (482)
T 1wb1_A          181 NLIITTLN  188 (482)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            99988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.91  E-value=8.2e-10  Score=108.45  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=72.5

Q ss_pred             EEEEeeCcceeeeecCCcc--------cccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         165 FTIVISNIPFLFVDVGGQR--------SQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       165 ~~~~~~~~~~~i~DvgGq~--------~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..+.+++..+.+|||||+.        ..+..|..++++++++|||+|.++.          ....  -.++..++..  
T Consensus        44 ~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~----------~~~~--d~~~~~~l~~--  109 (436)
T 2hjg_A           44 SSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG----------VTAA--DEEVAKILYR--  109 (436)
T ss_dssp             EECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTC----------SCHH--HHHHHHHHTT--
T ss_pred             EEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCC----------CCHH--HHHHHHHHHH--
Confidence            3445567899999999996        5678889999999999999999874          1111  1223333332  


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                       .+.|++|++||+|+.....     .+.++                      .++.    . -.++.+||++|.|+.++|
T Consensus       110 -~~~pvilv~NK~D~~~~~~-----~~~~~----------------------~~lg----~-~~~~~iSA~~g~gv~~L~  156 (436)
T 2hjg_A          110 -TKKPVVLAVNKLDNTEMRA-----NIYDF----------------------YSLG----F-GEPYPISGTHGLGLGDLL  156 (436)
T ss_dssp             -CCSCEEEEEECCCC----------CCCSS----------------------GGGS----S-CCCEECBTTTTBTHHHHH
T ss_pred             -cCCCEEEEEECccCccchh-----hHHHH----------------------HHcC----C-CCeEEEeCcCCCChHHHH
Confidence             5689999999999865421     11111                      1110    0 136889999999999999


Q ss_pred             HHHHHHHH
Q psy3651         317 NAVKNTIL  324 (334)
Q Consensus       317 ~~v~~~I~  324 (334)
                      +++.+.+.
T Consensus       157 ~~i~~~l~  164 (436)
T 2hjg_A          157 DAVAEHFK  164 (436)
T ss_dssp             HHHHHTGG
T ss_pred             HHHHHhcC
Confidence            99987664

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.90  E-value=4.6e-09  Score=101.90  Aligned_cols=132  Identities=11%  Similarity=0.140  Sum_probs=85.9

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..|+++....+..++..+.+||++|++.+.+.+..++..+|++|+|+|.++-           .+.+..+.+..+..   
T Consensus        51 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~e~l~~~~~---  116 (397)
T 1d2e_A           51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLARQ---  116 (397)
T ss_dssp             TEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---
T ss_pred             CcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC-----------CCHHHHHHHHHHHH---
Confidence            3466655556666778999999999999999999999999999999999984           23344444433322   


Q ss_pred             CCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch----
Q psy3651         237 FRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN----  311 (334)
Q Consensus       237 ~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n----  311 (334)
                       .+.| +++++||+|+....   ..  +..          ..+++.+++.    ... .....+.++.+||+++.|    
T Consensus       117 -~~vp~iivviNK~Dl~~~~---~~--~~~----------~~~~~~~~l~----~~~-~~~~~~~~i~~SA~~g~n~~~~  175 (397)
T 1d2e_A          117 -IGVEHVVVYVNKADAVQDS---EM--VEL----------VELEIRELLT----EFG-YKGEETPIIVGSALCALEQRDP  175 (397)
T ss_dssp             -TTCCCEEEEEECGGGCSCH---HH--HHH----------HHHHHHHHHH----HTT-SCTTTSCEEECCHHHHHTTCCT
T ss_pred             -cCCCeEEEEEECcccCCCH---HH--HHH----------HHHHHHHHHH----HcC-CCcccCcEEEeehhhcccccCC
Confidence             3577 78999999986311   00  000          0011222221    111 112346789999999764    


Q ss_pred             ------HHHHHHHHHHHH
Q psy3651         312 ------IKIVFNAVKNTI  323 (334)
Q Consensus       312 ------I~~vf~~v~~~I  323 (334)
                            |.++++.+.+.+
T Consensus       176 ~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          176 ELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTTHHHHHHHHHHHHHHS
T ss_pred             CccCCcHHHHHHHHHHhC
Confidence                  788888776644

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.89  E-value=7.5e-10  Score=110.59  Aligned_cols=119  Identities=10%  Similarity=0.097  Sum_probs=79.4

Q ss_pred             EEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy3651         166 TIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILF  245 (334)
Q Consensus       166 ~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~  245 (334)
                      .+..++..+.+|||+|++.+...|..++..+|++|+|+|.++-           .+.++...+.....    .+.|++++
T Consensus        45 ~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g-----------~~~qT~e~l~~~~~----~~vPiIVv  109 (501)
T 1zo1_I           45 HVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG-----------VMPQTIEAIQHAKA----AQVPVVVA  109 (501)
T ss_dssp             CCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB-----------SCTTTHHHHHHHHH----TTCCEEEE
T ss_pred             EEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC-----------ccHHHHHHHHHHHh----cCceEEEE
Confidence            3445677899999999999999999999999999999998873           11222222322222    46799999


Q ss_pred             EeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         246 LNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       246 lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      +||+|+.....    ..+...+.++.-.                  ...-...+.++++||+++.||.++|+++..
T Consensus       110 iNKiDl~~~~~----~~v~~~l~~~~~~------------------~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          110 VNKIDKPEADP----DRVKNELSQYGIL------------------PEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             EECSSSSTTCC----CCTTCCCCCCCCC------------------TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             EEeccccccCH----HHHHHHHHHhhhh------------------HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            99999965321    1111111110000                  000012467999999999999999998764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.88  E-value=6.5e-09  Score=100.98  Aligned_cols=80  Identities=15%  Similarity=0.240  Sum_probs=60.6

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |+......+...+..+.+||++|++.+.+.+..++..+|++|+|+|.++-           .+.+...++..+..    .
T Consensus        62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g-----------~~~qt~~~l~~~~~----~  126 (405)
T 2c78_A           62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADG-----------PMPQTREHILLARQ----V  126 (405)
T ss_dssp             CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTC-----------CCHHHHHHHHHHHH----T
T ss_pred             CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCC-----------CcHHHHHHHHHHHH----c
Confidence            34444445566678999999999999999999999999999999999884           23344455544332    3


Q ss_pred             CCc-EEEEEeCCCcch
Q psy3651         239 NVS-FILFLNKTDLLA  253 (334)
Q Consensus       239 ~~p-iiL~lNK~Dl~~  253 (334)
                      +.| +++++||+|+..
T Consensus       127 ~ip~iivviNK~Dl~~  142 (405)
T 2c78_A          127 GVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             TCCCEEEEEECGGGCC
T ss_pred             CCCEEEEEEECccccC
Confidence            567 899999999863

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.88  E-value=6.3e-09  Score=100.19  Aligned_cols=129  Identities=8%  Similarity=0.024  Sum_probs=90.1

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .+..|+++....++.++..+.+|||+|++.+.+.....++.+|++|+|+| ++           ..+.+..+++..+.. 
T Consensus        43 ~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-----------g~~~qt~e~~~~~~~-  109 (370)
T 2elf_A           43 KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-----------GLDAHTGECIIALDL-  109 (370)
T ss_dssp             EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-----------CCCHHHHHHHHHHHH-
T ss_pred             hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-----------CCcHHHHHHHHHHHH-
Confidence            45677777777888888999999999999998888889999999999999 54           344444444443322 


Q ss_pred             cCCCCCcE-EEEEe-CCCcchhh-hccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEE--Eeeec-
Q psy3651         235 VIFRNVSF-ILFLN-KTDLLAEK-LRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHF--TTAVD-  308 (334)
Q Consensus       235 ~~~~~~pi-iL~lN-K~Dl~~ek-i~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~--tsA~d-  308 (334)
                         .+.|. ++++| |+|+ .+. +......+.+++                     ..   .....+.++.  +||++ 
T Consensus       110 ---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l---------------------~~---~~~~~~~ii~~~~SA~~~  161 (370)
T 2elf_A          110 ---LGFKHGIIALTRSDST-HMHAIDELKAKLKVIT---------------------SG---TVLQDWECISLNTNKSAK  161 (370)
T ss_dssp             ---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHT---------------------TT---STTTTCEEEECCCCTTSS
T ss_pred             ---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHH---------------------Hh---cCCCceEEEecccccccC
Confidence               34666 89999 9999 432 100001122211                     11   1113477899  99999 


Q ss_pred             --CchHHHHHHHHHHHHH
Q psy3651         309 --TENIKIVFNAVKNTIL  324 (334)
Q Consensus       309 --~~nI~~vf~~v~~~I~  324 (334)
                        ++||.++++.+.+.+-
T Consensus       162 ~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          162 NPFEGVDELKARINEVAE  179 (370)
T ss_dssp             STTTTHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhhcc
Confidence              9999999999887654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.88  E-value=3.6e-09  Score=102.81  Aligned_cols=116  Identities=14%  Similarity=0.132  Sum_probs=81.1

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.+.+.+..++..+|++|+|+|.++.          ..+.+...++..+...   ...|+++++||+|+
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~----------~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl  141 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP----------FPQPQTREHFVALGII---GVKNLIIVQNKVDV  141 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSC----------SSCHHHHHHHHHHHHH---TCCCEEEEEECGGG
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC----------CCcHHHHHHHHHHHHc---CCCCEEEEEECccc
Confidence            6789999999999999999999999999999999985          2344444444433221   22589999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      ....-      ...              ..+.+.+.+..   .....+.++.+||+++.||.++|+++.+.+
T Consensus       142 ~~~~~------~~~--------------~~~~i~~~l~~---~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          142 VSKEE------ALS--------------QYRQIKQFTKG---TWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             SCHHH------HHH--------------HHHHHHHHHTT---STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cchHH------HHH--------------HHHHHHHHHHh---hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            65421      000              11112221111   112356799999999999999999998755

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.87  E-value=2.8e-09  Score=108.71  Aligned_cols=127  Identities=15%  Similarity=0.125  Sum_probs=83.2

Q ss_pred             eeeecceeEEEEEee-----CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHH
Q psy3651         156 RKATKGITEFTIVIS-----NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDT  230 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~-----~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~  230 (334)
                      +..|+......+.+.     +..+.+|||+|+..+...|..++..++++|+|+|.++-.          . .++...|..
T Consensus        50 rGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv----------~-~qt~~~~~~  118 (599)
T 3cb4_D           50 RGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGV----------E-AQTLANCYT  118 (599)
T ss_dssp             -------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC----------C-THHHHHHHH
T ss_pred             ccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCC----------C-HHHHHHHHH
Confidence            333444444455554     378999999999999999999999999999999999852          1 233444444


Q ss_pred             HHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCc
Q psy3651         231 IINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTE  310 (334)
Q Consensus       231 i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~  310 (334)
                      ...    .+.|+++|+||+|+.....                     +.+.+-+.+.+ ++     ....++.+||+++.
T Consensus       119 ~~~----~~ipiIvViNKiDl~~a~~---------------------~~v~~ei~~~l-g~-----~~~~vi~vSAktg~  167 (599)
T 3cb4_D          119 AME----MDLEVVPVLNKIDLPAADP---------------------ERVAEEIEDIV-GI-----DATDAVRCSAKTGV  167 (599)
T ss_dssp             HHH----TTCEEEEEEECTTSTTCCH---------------------HHHHHHHHHHT-CC-----CCTTCEEECTTTCT
T ss_pred             HHH----CCCCEEEeeeccCcccccH---------------------HHHHHHHHHHh-CC-----CcceEEEeecccCC
Confidence            433    4679999999999865321                     11111122221 11     11136889999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy3651         311 NIKIVFNAVKNTIL  324 (334)
Q Consensus       311 nI~~vf~~v~~~I~  324 (334)
                      ||.++|+++.+.+.
T Consensus       168 GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          168 GVQDVLERLVRDIP  181 (599)
T ss_dssp             THHHHHHHHHHHSC
T ss_pred             CchhHHHHHhhcCC
Confidence            99999999887653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.87  E-value=3.9e-09  Score=104.59  Aligned_cols=114  Identities=20%  Similarity=0.300  Sum_probs=71.3

Q ss_pred             EEEEEeeCcceeeeecCCcccccccc--------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKW--------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw--------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ...+.+++..+.+|||+|++.....|        ..++.+++++|+|+|.++.          ... +...+++.+    
T Consensus       264 ~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~----------~~~-~~~~i~~~l----  328 (462)
T 3geh_A          264 ESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATG----------WTT-GDQEIYEQV----  328 (462)
T ss_dssp             HHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTC----------SCH-HHHHHHHHH----
T ss_pred             EEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCC----------CCH-HHHHHHHhc----
Confidence            34556678889999999997755433        3468899999999999985          121 223344433    


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                        .+.|+++|+||+|+.....   ...+.++                             .....++.+||+++.||.++
T Consensus       329 --~~~piivV~NK~Dl~~~~~---~~~~~~~-----------------------------~~~~~~i~iSAktg~Gi~eL  374 (462)
T 3geh_A          329 --KHRPLILVMNKIDLVEKQL---ITSLEYP-----------------------------ENITQIVHTAAAQKQGIDSL  374 (462)
T ss_dssp             --TTSCEEEEEECTTSSCGGG---STTCCCC-----------------------------TTCCCEEEEBTTTTBSHHHH
T ss_pred             --cCCcEEEEEECCCCCcchh---hHHHHHh-----------------------------ccCCcEEEEECCCCCCHHHH
Confidence              2369999999999876532   1111110                             02345789999999999999


Q ss_pred             HHHHHHHHHHH
Q psy3651         316 FNAVKNTILHR  326 (334)
Q Consensus       316 f~~v~~~I~~~  326 (334)
                      |+++.+.+...
T Consensus       375 ~~~i~~~~~~~  385 (462)
T 3geh_A          375 ETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHhcc
Confidence            99999877543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.87  E-value=3.4e-09  Score=105.46  Aligned_cols=131  Identities=14%  Similarity=0.123  Sum_probs=81.5

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      .|+.+....+...+..+.||||+|++.+.+.+..++++++++|+|+|.++...   +.. .+.......... ++..  .
T Consensus        97 iTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~---~~~-~~~~~qt~e~~~-~~~~--~  169 (483)
T 3p26_A           97 VTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF---ESG-FDLDGQTKEHML-LASS--L  169 (483)
T ss_dssp             SSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC----------CCCCHHHHHHHH-HHHH--T
T ss_pred             cceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc---ccc-cchhhhHHHHHH-HHHH--c
Confidence            35555566777788999999999999999999999999999999999998411   000 001112222211 1221  2


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      ...|+||++||+|+....    ..              ..+.+.+.+...+..+... ...+.++.+||+++.||.+
T Consensus       170 ~~~~iIvviNK~Dl~~~~----~~--------------~~~~i~~~~~~~l~~~g~~-~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          170 GIHNLIIAMNKMDNVDWS----QQ--------------RFEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             TCCCEEEEEECGGGGTTC----HH--------------HHHHHHHHHHHHHHHHTCC-GGGEEEEECCSSSCTTSSS
T ss_pred             CCCcEEEEEECcCcccch----HH--------------HHHHHHHHHHHHHHHcCCC-cccceEEEEeeecCCCccc
Confidence            334799999999986521    10              1122223333333332211 1357889999999999975

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.86  E-value=3.7e-09  Score=107.71  Aligned_cols=126  Identities=15%  Similarity=0.204  Sum_probs=84.1

Q ss_pred             eeecceeEEEEEee-----CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         157 KATKGITEFTIVIS-----NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~-----~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      ..|+......+.+.     +..+.+|||+|+..+...|..+++.++++|+|+|.++-           ...+.+..|...
T Consensus        53 GITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g-----------v~~qt~~~~~~a  121 (600)
T 2ywe_A           53 GITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG-----------IEAQTVANFWKA  121 (600)
T ss_dssp             ---CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB-----------CCHHHHHHHHHH
T ss_pred             cceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC-----------ccHHHHHHHHHH
Confidence            33444333444443     37889999999999999999999999999999999985           223444445444


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                      ..    .+.|+++|+||+|+.....                     +.+.+-+.+.+ ++     ....++++||+++.|
T Consensus       122 ~~----~~ipiIvviNKiDl~~a~~---------------------~~v~~el~~~l-g~-----~~~~vi~vSAktg~G  170 (600)
T 2ywe_A          122 VE----QDLVIIPVINKIDLPSADV---------------------DRVKKQIEEVL-GL-----DPEEAILASAKEGIG  170 (600)
T ss_dssp             HH----TTCEEEEEEECTTSTTCCH---------------------HHHHHHHHHTS-CC-----CGGGCEECBTTTTBS
T ss_pred             HH----CCCCEEEEEeccCccccCH---------------------HHHHHHHHHhh-CC-----CcccEEEEEeecCCC
Confidence            43    4689999999999865421                     01111111110 11     112368999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTIL  324 (334)
Q Consensus       312 I~~vf~~v~~~I~  324 (334)
                      |.++|+++.+.+.
T Consensus       171 I~~Lle~I~~~lp  183 (600)
T 2ywe_A          171 IEEILEAIVNRIP  183 (600)
T ss_dssp             HHHHHHHHHHHSC
T ss_pred             chHHHHHHHHhcc
Confidence            9999999887653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.83  E-value=1.1e-08  Score=104.14  Aligned_cols=134  Identities=12%  Similarity=0.076  Sum_probs=81.8

Q ss_pred             ceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         173 PFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      .+.+|||+|+..+...|..+++.+|++|+|+|+++-           -..++...+..+..    .++|+++++||+|+.
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~G-----------v~~qT~e~l~~l~~----~~vPiIVViNKiDl~  135 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YRTPFVVAANKIDRI  135 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHH----TTCCEEEEEECGGGS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC-----------ccHhHHHHHHHHHH----cCCeEEEEecccccc
Confidence            489999999999999999999999999999999983           22334444443332    468999999999986


Q ss_pred             hhhhccccchhhhhCCCCCCCCccHHH----HHHHHHHHHHh--hcc-------CCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         253 AEKLRTSKTSIAEHFPEFEGDPQDMQA----VQTFLLNYFKA--VKR-------DEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       253 ~eki~~~~~~l~~~Fp~y~g~~~~~~~----~~~fi~~~F~~--l~~-------~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      ...-   ...-..++............    ...-+...+..  +..       .....+.++.+||+++.||.++++++
T Consensus       136 ~~~~---~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I  212 (594)
T 1g7s_A          136 HGWR---VHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTML  212 (594)
T ss_dssp             TTCC---CCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHH
T ss_pred             cccc---cccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHH
Confidence            4311   00000010001111111100    00011111111  100       01244688999999999999999999


Q ss_pred             HHHHH
Q psy3651         320 KNTIL  324 (334)
Q Consensus       320 ~~~I~  324 (334)
                      ...+.
T Consensus       213 ~~~~~  217 (594)
T 1g7s_A          213 MGLAQ  217 (594)
T ss_dssp             HHHHH
T ss_pred             Hhhcc
Confidence            88664

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.82  E-value=5.8e-09  Score=102.32  Aligned_cols=128  Identities=12%  Similarity=0.088  Sum_probs=80.8

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..|+.+....+...+.++.+||++|++.+.+.+..++..++++|+|+|.++-           .+.+...++..+..   
T Consensus        89 GiTi~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g-----------~~~qt~~~l~~~~~---  154 (434)
T 1zun_B           89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-----------VQTQTRRHSYIASL---  154 (434)
T ss_dssp             -CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---
T ss_pred             CcEEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC-----------CcHHHHHHHHHHHH---
Confidence            3455555566677788999999999999999999999999999999999984           22333333332221   


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ....|+++++||+|+....    ...+              +...+-+.+.+..+.. ....+.++.+||+++.||.++|
T Consensus       155 ~~~~~iIvviNK~Dl~~~~----~~~~--------------~~i~~~~~~~~~~~g~-~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          155 LGIKHIVVAINKMDLNGFD----ERVF--------------ESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             TTCCEEEEEEECTTTTTSC----HHHH--------------HHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTSSCC
T ss_pred             cCCCeEEEEEEcCcCCccc----HHHH--------------HHHHHHHHHHHHHhCC-CccCceEEEEeccCCCCccccc
Confidence            1223699999999986421    0000              0011112221112110 0134778999999999998754


Q ss_pred             H
Q psy3651         317 N  317 (334)
Q Consensus       317 ~  317 (334)
                      .
T Consensus       216 ~  216 (434)
T 1zun_B          216 E  216 (434)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.81  E-value=2.3e-08  Score=103.76  Aligned_cols=85  Identities=16%  Similarity=0.106  Sum_probs=64.3

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .+.+|++.....+..++..+.+|||+|+..++..|..+++.+|++|+|+|.++..           ..+....|..+.. 
T Consensus        60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-----------~~~t~~~~~~~~~-  127 (691)
T 1dar_A           60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-----------EPQSETVWRQAEK-  127 (691)
T ss_dssp             -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-----------CHHHHHHHHHHHH-
T ss_pred             hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCc-----------chhhHHHHHHHHH-
Confidence            3456777777778888999999999999999999999999999999999999852           2334455555443 


Q ss_pred             cCCCCCcEEEEEeCCCcchh
Q psy3651         235 VIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~e  254 (334)
                         .+.|+++|+||+|+...
T Consensus       128 ---~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A          128 ---YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             ---TTCCEEEEEECTTSTTC
T ss_pred             ---cCCCEEEEEECCCcccC
Confidence               36899999999998764

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.80  E-value=1.9e-08  Score=97.89  Aligned_cols=117  Identities=16%  Similarity=0.231  Sum_probs=71.6

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.+.+.+......+|++|+|+|.++-          -.+.++.+.+..+ .  .....|+++++||+|+
T Consensus        81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g----------~~~~qt~e~l~~~-~--~l~~~~iivv~NK~Dl  147 (408)
T 1s0u_A           81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP----------CPQPQTKEHLMAL-E--ILGIDKIIIVQNKIDL  147 (408)
T ss_dssp             EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC----------SSCHHHHHHHHHH-H--HTTCCCEEEEEECTTS
T ss_pred             cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC----------CCCchhHHHHHHH-H--HcCCCeEEEEEEccCC
Confidence            6799999999999988888888899999999999974          1122222222221 1  1233589999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ....-  ...              ..+++.+++..       .....+.++.+||+++.||.++++++.+.+.
T Consensus       148 ~~~~~--~~~--------------~~~~i~~~l~~-------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          148 VDEKQ--AEE--------------NYEQIKEFVKG-------TIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             SCTTT--TTT--------------HHHHHHHHHTT-------STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             CCHHH--HHH--------------HHHHHHHHHhh-------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            65321  000              11222222211       1123567899999999999999999887553

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.80  E-value=5.5e-09  Score=102.59  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=77.6

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+.+....+...+..+.+||++|++.+.+.|..+++.++++|+|+|.++- ..  |.- ...+.+..+.+.....  
T Consensus        68 ~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~g-sf--e~~-~~~~~qt~~~~~~~~~--  141 (435)
T 1jny_A           68 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG-EY--EAG-MSVEGQTREHIILAKT--  141 (435)
T ss_dssp             ---------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT-HH--HHH-HSTTCHHHHHHHHHHH--
T ss_pred             cCceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCC-cc--ccc-cccchHHHHHHHHHHH--
Confidence            34456655566777789999999999999999999999999999999999982 10  000 0011122222221111  


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                       ..-.|+++++||+|+.....  ....+              +...+-+++.+..... ....+.++.+||+++.||.++
T Consensus       142 -~~~~~iivviNK~Dl~~~~~--~~~~~--------------~~~~~~i~~~~~~~~~-~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          142 -MGLDQLIVAVNKMDLTEPPY--DEKRY--------------KEIVDQVSKFMRSYGF-NTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             -TTCTTCEEEEECGGGSSSTT--CHHHH--------------HHHHHHHHHHHHHTTC-CCTTCEEEECBTTTTBTTTBC
T ss_pred             -cCCCeEEEEEEcccCCCccc--cHHHH--------------HHHHHHHHHHHHHcCC-CcCCceEEEeecccCcccccc
Confidence             12246999999999865210  00001              1111222222222211 113478899999999999765


Q ss_pred             HH
Q psy3651         316 FN  317 (334)
Q Consensus       316 f~  317 (334)
                      +.
T Consensus       204 ~~  205 (435)
T 1jny_A          204 SE  205 (435)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.79  E-value=2.3e-08  Score=98.11  Aligned_cols=125  Identities=14%  Similarity=0.213  Sum_probs=77.0

Q ss_pred             EEEEEeeCcceeeeecCCcccccccc------------cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKW------------FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw------------~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      ...+.+++..+.+||++|++..+...            ..+++.++++++|+|.++.          ....+ ..+.+.+
T Consensus       220 ~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~----------~~~~~-~~i~~~l  288 (439)
T 1mky_A          220 DDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG----------ITRQD-QRMAGLM  288 (439)
T ss_dssp             CEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTC----------CCHHH-HHHHHHH
T ss_pred             EEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCC----------CCHHH-HHHHHHH
Confidence            34566778889999999997544332            2356789999999999874          11111 2222222


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                       ..   .+.|+++++||+|+..++-    ...              +...+.+.+.+..+     ....+++|||++|.|
T Consensus       289 -~~---~~~~~ilv~NK~Dl~~~~~----~~~--------------~~~~~~~~~~~~~~-----~~~~~~~~SA~~g~g  341 (439)
T 1mky_A          289 -ER---RGRASVVVFNKWDLVVHRE----KRY--------------DEFTKLFREKLYFI-----DYSPLIFTSADKGWN  341 (439)
T ss_dssp             -HH---TTCEEEEEEECGGGSTTGG----GCH--------------HHHHHHHHHHCGGG-----TTSCEEECBTTTTBS
T ss_pred             -HH---cCCCEEEEEECccCCCchh----hHH--------------HHHHHHHHHHhccC-----CCCcEEEEECCCCCC
Confidence             22   4689999999999865321    001              11122233332211     235688999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTILHR  326 (334)
Q Consensus       312 I~~vf~~v~~~I~~~  326 (334)
                      |.++|+.+.+.+.+.
T Consensus       342 v~~l~~~i~~~~~~~  356 (439)
T 1mky_A          342 IDRMIDAMNLAYASY  356 (439)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999998876554

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.79  E-value=1.5e-09  Score=107.65  Aligned_cols=138  Identities=13%  Similarity=0.128  Sum_probs=67.6

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc-hhhcccccccHHHHHHHHHHHHh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ-TLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~-~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      .+..|+++....+..++..+.+||++|++.+.+.+..++..+|++|+|+|.++-.. .-++.  .....+.+.+   ...
T Consensus       104 ~~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~--~~qt~e~l~~---~~~  178 (467)
T 1r5b_A          104 EKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER--GGQTREHAVL---ART  178 (467)
T ss_dssp             ---------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTST--TCCHHHHHHH---HHH
T ss_pred             hcCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCC--CCcHHHHHHH---HHH
Confidence            45667777777788888999999999999999999999999999999999987410 00000  0112222222   111


Q ss_pred             hcCCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         234 NVIFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       234 ~~~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                          .++| ++|++||+|+.....  ....+..          ..+.+.+++... ..+..  ...+.++.+||+++.||
T Consensus       179 ----~~vp~iivviNK~Dl~~~~~--~~~~~~~----------i~~e~~~~l~~~-~g~~~--~~~~~~i~vSA~~g~~i  239 (467)
T 1r5b_A          179 ----QGINHLVVVINKMDEPSVQW--SEERYKE----------CVDKLSMFLRRV-AGYNS--KTDVKYMPVSAYTGQNV  239 (467)
T ss_dssp             ----TTCSSEEEEEECTTSTTCSS--CHHHHHH----------HHHHHHHHHHHH-HCCCH--HHHEEEEECBTTTTBTT
T ss_pred             ----cCCCEEEEEEECccCCCccc--cHHHHHH----------HHHHHHHHHHHh-cCCCc--cCCceEEeccccccccc
Confidence                3566 999999999854110  0000100          011222233221 01100  12477899999999999


Q ss_pred             HHHH
Q psy3651         313 KIVF  316 (334)
Q Consensus       313 ~~vf  316 (334)
                      .++|
T Consensus       240 ~~l~  243 (467)
T 1r5b_A          240 KDRV  243 (467)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            8765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.78  E-value=2.3e-08  Score=96.04  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=85.6

Q ss_pred             eecceeEEEEEeeCcceeeeecCCccc---------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRS---------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~---------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      +|.+.....+.+.+..+.+|||+|+..         +++.+. .+..++.+++|+|+++.+         ....+.+..+
T Consensus       212 ~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~---------~~~~~~~~~~  281 (364)
T 2qtf_A          212 TTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSE---------NLLIETLQSS  281 (364)
T ss_dssp             --CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCH---------HHHHHHHHHH
T ss_pred             cccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCc---------chHHHHHHHH
Confidence            455566677788888899999999833         233333 468899999999999852         0133334444


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeec
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVD  308 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d  308 (334)
                      .+++..-...+.|+++|+||+|+.....  .  ..             .+.+..+..    .+.   .....++.|||++
T Consensus       282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~--~--~~-------------~~~~~~l~~----~l~---~~~~~~~~~SA~~  337 (364)
T 2qtf_A          282 FEILREIGVSGKPILVTLNKIDKINGDL--Y--KK-------------LDLVEKLSK----ELY---SPIFDVIPISALK  337 (364)
T ss_dssp             HHHHHHHTCCSCCEEEEEECGGGCCSCH--H--HH-------------HHHHHHHHH----HHC---SCEEEEEECBTTT
T ss_pred             HHHHHHhCcCCCCEEEEEECCCCCCchH--H--HH-------------HHHHHHHHH----Hhc---CCCCcEEEEECCC
Confidence            4444433346789999999999864311  0  00             001110111    110   1124568899999


Q ss_pred             CchHHHHHHHHHHHHHHHh
Q psy3651         309 TENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       309 ~~nI~~vf~~v~~~I~~~~  327 (334)
                      +.|+.++++++.+.+....
T Consensus       338 g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             TBSHHHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHhcccC
Confidence            9999999999998776544

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.76  E-value=4.4e-08  Score=101.76  Aligned_cols=84  Identities=15%  Similarity=0.118  Sum_probs=65.0

Q ss_pred             eeeecceeEEEEEeeC-------cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH
Q psy3651         156 RKATKGITEFTIVISN-------IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF  228 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~-------~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf  228 (334)
                      +..|++.....+.+++       ..+.||||+|+..+...|..+++.+|++|+|+|.++-           .......+|
T Consensus        59 rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g-----------v~~qt~~~~  127 (704)
T 2rdo_7           59 RGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG-----------VQPQSETVW  127 (704)
T ss_pred             cCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC-----------CcHHHHHHH
Confidence            4456665556666665       8999999999999999999999999999999999984           223444555


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      ..+..    .+.|+++|+||+|+...
T Consensus       128 ~~~~~----~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7          128 RQANK----YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             HHHHH----cCCCEEEEEeCCCcccc
Confidence            54432    46899999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.70  E-value=8e-09  Score=101.94  Aligned_cols=111  Identities=17%  Similarity=0.188  Sum_probs=73.7

Q ss_pred             EEEeeCcceeeeecCC--------cccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         166 TIVISNIPFLFVDVGG--------QRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       166 ~~~~~~~~~~i~DvgG--------q~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      .+...+..+.+|||+|        ++..+..+..++++++++|||+|.++.            +...-.++..++..   
T Consensus        65 ~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~------------~~~~d~~l~~~l~~---  129 (456)
T 4dcu_A           65 SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG------------VTAADEEVAKILYR---  129 (456)
T ss_dssp             ECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC------------SCHHHHHHHHHHTT---
T ss_pred             EEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC------------CChHHHHHHHHHHH---
Confidence            3344678999999999        888899999999999999999997763            11222233333432   


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|++|++||+|+.....     ...++                      ..+.   -.  ..+.+||+++.|+.++++
T Consensus       130 ~~~pvilV~NK~D~~~~~~-----~~~e~----------------------~~lg---~~--~~~~iSA~~g~gv~~L~~  177 (456)
T 4dcu_A          130 TKKPVVLAVNKLDNTEMRA-----NIYDF----------------------YSLG---FG--EPYPISGTHGLGLGDLLD  177 (456)
T ss_dssp             CCSCEEEEEECC--------------CCS----------------------GGGS---SS--SEEECCTTTCTTHHHHHH
T ss_pred             cCCCEEEEEECccchhhhh-----hHHHH----------------------HHcC---CC--ceEEeecccccchHHHHH
Confidence            5789999999999864321     11111                      1110   01  246899999999999999


Q ss_pred             HHHHHH
Q psy3651         318 AVKNTI  323 (334)
Q Consensus       318 ~v~~~I  323 (334)
                      ++.+.+
T Consensus       178 ~i~~~l  183 (456)
T 4dcu_A          178 AVAEHF  183 (456)
T ss_dssp             HHHTTG
T ss_pred             HHHhhc
Confidence            987755

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.69  E-value=9.2e-08  Score=99.20  Aligned_cols=85  Identities=14%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      .+..|++.....+..++..+.+|||+|+..+...|..+++.+|++|+|+|.++.           ........|..+.. 
T Consensus        58 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g-----------~~~~~~~~~~~~~~-  125 (693)
T 2xex_A           58 DRGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSG-----------VEPQTETVWRQATT-  125 (693)
T ss_dssp             ------CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTB-----------SCHHHHHHHHHHHH-
T ss_pred             hcCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCC-----------CcHHHHHHHHHHHH-
Confidence            345677766777788889999999999999999999999999999999999984           22344455655443 


Q ss_pred             cCCCCCcEEEEEeCCCcchh
Q psy3651         235 VIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~e  254 (334)
                         .+.|+++|+||+|+...
T Consensus       126 ---~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A          126 ---YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             ---TTCCEEEEEECTTSTTC
T ss_pred             ---cCCCEEEEEECCCcccc
Confidence               36899999999998753

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.68  E-value=2.4e-08  Score=98.77  Aligned_cols=132  Identities=14%  Similarity=0.120  Sum_probs=78.4

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..|+.+....+...+..+.+|||+|++.+.+.+..++..+|++|+|+|.++-..   + .+.+...+....+..+ ..  
T Consensus        70 GiTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~---~-~sf~~~~qt~~~~~~~-~~--  142 (458)
T 1f60_A           70 GITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEF---E-AGISKDGQTREHALLA-FT--  142 (458)
T ss_dssp             TCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHH---H-HHTCTTSHHHHHHHHH-HH--
T ss_pred             CcEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCcc---c-cccCcchhHHHHHHHH-HH--
Confidence            345555556677778899999999999999999999999999999999987310   0 0000000222222222 21  


Q ss_pred             CCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         237 FRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       237 ~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                       .+.| ++|++||+|+....    ...+              +...+-+...+..+.. ....+.++.+||+++.||.+.
T Consensus       143 -~~v~~iivviNK~Dl~~~~----~~~~--------------~~i~~~~~~~l~~~g~-~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          143 -LGVRQLIVAVNKMDSVKWD----ESRF--------------QEIVKETSNFIKKVGY-NPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             -TTCCEEEEEEECGGGGTTC----HHHH--------------HHHHHHHHHHHHHHTC-CGGGCCEEECCTTTCBTTTBC
T ss_pred             -cCCCeEEEEEEccccccCC----HHHH--------------HHHHHHHHHHHHHcCC-CccCceEEEeecccCcCcccc
Confidence             2454 99999999986310    0001              0111112221111111 112367899999999998643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.68  E-value=4.2e-08  Score=95.39  Aligned_cols=117  Identities=14%  Similarity=0.189  Sum_probs=76.7

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDL  251 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl  251 (334)
                      ..+.+||++|++.+.+.+......+|++|+|+|.++-.       ......+.+.++..+      ...|+++++||+|+
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~-------~~~qt~e~l~~~~~~------~~~~iivviNK~Dl  149 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC-------PRPQTREHLMALQII------GQKNIIIAQNKIEL  149 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS-------SCHHHHHHHHHHHHH------TCCCEEEEEECGGG
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC-------CChhHHHHHHHHHHc------CCCcEEEEEECccC
Confidence            67999999999998888887888899999999999731       001223333333321      23589999999998


Q ss_pred             chhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         252 LAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       252 ~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      ....-  ....              .+++.+|+.    ..   ....+.++.+||+++.||.++++++.+.+.
T Consensus       150 ~~~~~--~~~~--------------~~~i~~~l~----~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          150 VDKEK--ALEN--------------YRQIKEFIE----GT---VAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             SCHHH--HHHH--------------HHHHHHHHT----TS---TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCHHH--HHHH--------------HHHHHHHHH----hc---CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            65321  0000              111111111    10   123567899999999999999999887543

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.67  E-value=2.4e-08  Score=102.16  Aligned_cols=131  Identities=14%  Similarity=0.121  Sum_probs=81.0

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |+.+....+...+..+.||||+|++.+.+.+..++++++++|+|+|.++-.   .|. ............... .  ...
T Consensus       232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~---~e~-~~~~~~qt~e~l~~~-~--~lg  304 (611)
T 3izq_1          232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNA---FES-GFDLDGQTKEHMLLA-S--SLG  304 (611)
T ss_dssp             CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHH---HHT-TCCTTSHHHHHHHHH-H--TTT
T ss_pred             eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCc---ccc-cchhhhHHHHHHHHH-H--HcC
Confidence            444556677778899999999999999999999999999999999998721   000 000111222222111 1  123


Q ss_pred             CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ..|+||++||+|+....    ...              .+.+.+.+...+..+... ...+.++.+||++|.||.++
T Consensus       305 i~~iIVVvNKiDl~~~~----~~~--------------~~ei~~~l~~~l~~~g~~-~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          305 IHNLIIAMNKMDNVDWS----QQR--------------FEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CCEEEEEEECTTTTTTC----HHH--------------HHHHHHHHHHHHHHHTCC-GGGCEEEECCTTTCTTTSSC
T ss_pred             CCeEEEEEecccccchh----HHH--------------HHHHHHHHHHHHHhhccc-ccCccEEeeecccCCCcccc
Confidence            34699999999986521    000              112222333333322211 12467899999999999865

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.65  E-value=5.8e-08  Score=87.99  Aligned_cols=138  Identities=12%  Similarity=0.188  Sum_probs=79.6

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccccccc-----------ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRK-----------WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~k-----------w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      |.......+..++..+.+|||+|+......           +..++++++++|+|+|++.+.         ......+.+
T Consensus        58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~---------~~~~~~~~~  128 (260)
T 2xtp_A           58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYT---------SQDQQAAQR  128 (260)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCC---------HHHHHHHHH
T ss_pred             eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCC---------HHHHHHHHH
Confidence            334444455667889999999998765322           223778999999999998741         122233445


Q ss_pred             HHHHHhhcCCCCCcEEEEEe-CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC--eEEEEE
Q psy3651         228 FDTIINNVIFRNVSFILFLN-KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP--LFHHFT  304 (334)
Q Consensus       228 f~~i~~~~~~~~~piiL~lN-K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~--i~~~~t  304 (334)
                      +..+....  ...|+++++| |+|+....+  .. -+...         ..+.+.+.+.    .+.   .+.  +..+.|
T Consensus       129 l~~~~~~~--~~~~~i~vv~nK~Dl~~~~~--~~-~i~~~---------~~~~~~~~~~----~~~---~~~~~~~~~~~  187 (260)
T 2xtp_A          129 VKEIFGED--AMGHTIVLFTHKEDLNGGSL--MD-YMHDS---------DNKALSKLVA----ACG---GRICAFNNRAE  187 (260)
T ss_dssp             HHHHHCGG--GGGGEEEEEECGGGGTTCCH--HH-HHHHC---------CCHHHHHHHH----HTT---TCEEECCTTCC
T ss_pred             HHHHhCch--hhccEEEEEEcccccCCccH--HH-HHHhc---------chHHHHHHHH----HhC---CeEEEecCccc
Confidence            55544321  1346666666 999864322  10 01100         0011111111    111   110  111679


Q ss_pred             eeecCchHHHHHHHHHHHHHHH
Q psy3651         305 TAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       305 sA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ||+++.||.++|++|.+.+...
T Consensus       188 SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          188 GSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999987653

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.63  E-value=5.9e-08  Score=104.59  Aligned_cols=130  Identities=14%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |+.+....+..++..+.+|||+|++.+.+.+..++..+|++|+|+|.++-.           +.+..+++..+..    .
T Consensus       346 TIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv-----------~~QTrEhL~ll~~----l  410 (1289)
T 3avx_A          346 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGP-----------MPQTREHILLGRQ----V  410 (1289)
T ss_dssp             --CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCS-----------CTTHHHHHHHHHH----H
T ss_pred             eEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccC-----------cHHHHHHHHHHHH----c
Confidence            333334456667789999999999999999999999999999999999841           2223333332222    2


Q ss_pred             CCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC--------
Q psy3651         239 NVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT--------  309 (334)
Q Consensus       239 ~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~--------  309 (334)
                      ++| +||++||+|+....   ..  +..          ..+++.+++.    ... .....+.++.+||+++        
T Consensus       411 gIP~IIVVINKiDLv~d~---e~--le~----------i~eEi~elLk----~~G-~~~~~vp~IpvSAktG~ng~~~w~  470 (1289)
T 3avx_A          411 GVPYIIVFLNKCDMVDDE---EL--LEL----------VEMEVRELLS----QYD-FPGDDTPIVRGSALKALEGDAEWE  470 (1289)
T ss_dssp             TCSCEEEEEECCTTCCCH---HH--HHH----------HHHHHHHHHH----HTT-SCTTTCCEEECCSTTTTTCCHHHH
T ss_pred             CCCeEEEEEeecccccch---hh--HHH----------HHHHHHHHHH----hcc-ccccceeEEEEEeccCCCCCcccc
Confidence            567 89999999986421   00  000          0011111221    111 1123577899999999        


Q ss_pred             chHHHHHHHHHHHH
Q psy3651         310 ENIKIVFNAVKNTI  323 (334)
Q Consensus       310 ~nI~~vf~~v~~~I  323 (334)
                      .+|.++|+.+.+.+
T Consensus       471 eGI~eLleaL~~~I  484 (1289)
T 3avx_A          471 AKILELAGFLDSYI  484 (1289)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             ccchhhHhHHhhhc
Confidence            57888888776543

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.62  E-value=8e-08  Score=99.23  Aligned_cols=79  Identities=10%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |+......+..++..+.+||++|+..++..+..+++.++++|+|+|.++-           -......++..+..    .
T Consensus        61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g-----------~~~qt~~~~~~~~~----~  125 (665)
T 2dy1_A           61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAG-----------VQVGTERAWTVAER----L  125 (665)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTC-----------SCHHHHHHHHHHHH----T
T ss_pred             eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcc-----------cchhHHHHHHHHHH----c
Confidence            33344455666788999999999999999999999999999999998763           22334455555543    3


Q ss_pred             CCcEEEEEeCCCcc
Q psy3651         239 NVSFILFLNKTDLL  252 (334)
Q Consensus       239 ~~piiL~lNK~Dl~  252 (334)
                      +.|+++|+||+|+.
T Consensus       126 ~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          126 GLPRMVVVTKLDKG  139 (665)
T ss_dssp             TCCEEEEEECGGGC
T ss_pred             cCCEEEEecCCchh
Confidence            68999999999986

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.60  E-value=2.3e-07  Score=83.04  Aligned_cols=85  Identities=16%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             ecceeEEEEEeeCcceeeeecCC-----------cccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGG-----------QRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNI  227 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgG-----------q~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~l  227 (334)
                      |.......+.+.+..+.+|||+|           ++..++.+..++.+++++|+|+|++..+.         ...+.+.+
T Consensus        65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~l~~  135 (239)
T 3lxx_A           65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTE---------EEHKATEK  135 (239)
T ss_dssp             CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSS---------HHHHHHHH
T ss_pred             eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCH---------HHHHHHHH
Confidence            34444556667788999999999           45566777788899999999999987632         12333444


Q ss_pred             HHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         228 FDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       228 f~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      +...+...  ...|++||+||+|+...
T Consensus       136 ~~~~~~~~--~~~~~iiv~nK~D~~~~  160 (239)
T 3lxx_A          136 ILKMFGER--ARSFMILIFTRKDDLGD  160 (239)
T ss_dssp             HHHHHHHH--HGGGEEEEEECGGGC--
T ss_pred             HHHHhhhh--ccceEEEEEeCCccCCc
Confidence            44433321  23589999999998654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.59  E-value=1.5e-07  Score=87.85  Aligned_cols=112  Identities=16%  Similarity=0.195  Sum_probs=73.2

Q ss_pred             EEeeCcceeeeecCCcc---------cccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         167 IVISNIPFLFVDVGGQR---------SQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       167 ~~~~~~~~~i~DvgGq~---------~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      +..++..+.+|||+|+.         .++..+..+++.+++++||+|.++.          ..-.+  .+++.+..    
T Consensus        51 ~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~----------~~~~~--~i~~~l~~----  114 (301)
T 1ega_A           51 HTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------TPDDE--MVLNKLRE----  114 (301)
T ss_dssp             EEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------CHHHH--HHHHHHHS----
T ss_pred             EEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCC----------CHHHH--HHHHHHHh----
Confidence            34456789999999997         3455667889999999999998764          21111  22232221    


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCe-EEEEEeeecCchHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPL-FHHFTTAVDTENIKIVF  316 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i-~~~~tsA~d~~nI~~vf  316 (334)
                      .+.|++|++||+|+...+-     .+.+                 .+.    .+..  ..++ .++.+||+++.|+..++
T Consensus       115 ~~~P~ilvlNK~D~~~~~~-----~~~~-----------------~l~----~l~~--~~~~~~~i~iSA~~g~~v~~l~  166 (301)
T 1ega_A          115 GKAPVILAVNKVDNVQEKA-----DLLP-----------------HLQ----FLAS--QMNFLDIVPISAETGLNVDTIA  166 (301)
T ss_dssp             SSSCEEEEEESTTTCCCHH-----HHHH-----------------HHH----HHHT--TSCCSEEEECCTTTTTTHHHHH
T ss_pred             cCCCEEEEEECcccCccHH-----HHHH-----------------HHH----HHHH--hcCcCceEEEECCCCCCHHHHH
Confidence            4689999999999865111     0111                 111    1111  1122 57899999999999999


Q ss_pred             HHHHHH
Q psy3651         317 NAVKNT  322 (334)
Q Consensus       317 ~~v~~~  322 (334)
                      +.+.+.
T Consensus       167 ~~i~~~  172 (301)
T 1ega_A          167 AIVRKH  172 (301)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            988753

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.56  E-value=2.3e-08  Score=101.92  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccc--cccHHHHHHHHHHHHhh
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRR--TNRLHESRNIFDTIINN  234 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~--~nrl~esl~lf~~i~~~  234 (334)
                      ..|+.+....+..++..+.||||+|++.+.+.+..++..++++|+|+|.++-.   .|..-  .....+.+.+..   . 
T Consensus       240 GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~---~-  312 (592)
T 3mca_A          240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLR---A-  312 (592)
T ss_dssp             -------------------CCEEESSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHH---H-
T ss_pred             CeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHH---H-
Confidence            34555556667777899999999999999999999999999999999998621   00000  022223332222   1 


Q ss_pred             cCCCCCc-EEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH-HhhccCCCCCeEEEEEeeecCchH
Q psy3651         235 VIFRNVS-FILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF-KAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       235 ~~~~~~p-iiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F-~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                         .+.| +||++||+|+....    ...+              +...+-+...+ ..+. .....+.++.+||++|.||
T Consensus       313 ---lgip~iIvviNKiDl~~~~----~~~~--------------~~i~~el~~~l~~~~g-~~~~~~~ii~iSA~~G~gI  370 (592)
T 3mca_A          313 ---LGISEIVVSVNKLDLMSWS----EDRF--------------QEIKNIVSDFLIKMVG-FKTSNVHFVPISAISGTNL  370 (592)
T ss_dssp             ---SSCCCEEEEEECGGGGTTC----HHHH--------------HHHHHHHHHHHTTTSC-CCGGGEEEEEECSSSCSSS
T ss_pred             ---cCCCeEEEEEecccccccc----HHHH--------------HHHHHHHHHHHHHhhC-CCccceEEEEEecccCccc
Confidence               2344 99999999986411    0001              11111222222 1111 1113467899999999999


Q ss_pred             H
Q psy3651         313 K  313 (334)
Q Consensus       313 ~  313 (334)
                      .
T Consensus       371 ~  371 (592)
T 3mca_A          371 I  371 (592)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.56  E-value=2e-07  Score=93.77  Aligned_cols=83  Identities=13%  Similarity=0.240  Sum_probs=61.9

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+......+..++..+.+|||+|+..++..+..++..++++|+|+|.++..           ......++..+.   
T Consensus        66 rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-----------~~~t~~~~~~~~---  131 (529)
T 2h5e_A           66 RGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-----------EDRTRKLMEVTR---  131 (529)
T ss_dssp             ----CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-----------CHHHHHHHHHHT---
T ss_pred             CCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-----------hHHHHHHHHHHH---
Confidence            344555556678888999999999999999999999999999999999999841           122333333322   


Q ss_pred             CCCCCcEEEEEeCCCcch
Q psy3651         236 IFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~  253 (334)
                       ..+.|+++|+||+|+..
T Consensus       132 -~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A          132 -LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             -TTTCCEEEEEECTTSCC
T ss_pred             -HcCCCEEEEEcCcCCcc
Confidence             24689999999999865

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.55  E-value=7.5e-08  Score=88.39  Aligned_cols=125  Identities=14%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             eeecceeEEEEEe--eC--cceeeeecCCccc-------ccccc-------ccccc-------------CCCeEEEEEeC
Q psy3651         157 KATKGITEFTIVI--SN--IPFLFVDVGGQRS-------QRRKW-------FQCFD-------------SVTSILFLVSS  205 (334)
Q Consensus       157 ~~T~Gi~~~~~~~--~~--~~~~i~DvgGq~~-------~r~kw-------~~~f~-------------~v~~iIfv~dl  205 (334)
                      .+|+++......+  ++  +++.+|||+|+..       .+..+       ..|+.             .+|+++|+++.
T Consensus        46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~  125 (274)
T 3t5d_A           46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP  125 (274)
T ss_dssp             ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred             CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence            5677776655544  33  4899999999832       22332       33333             37899999987


Q ss_pred             CCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL  285 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~  285 (334)
                      +..          ........+++.+..     ++|+++|+||+|+....-      +..              ..+-+.
T Consensus       126 ~~~----------~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e------~~~--------------~~~~i~  170 (274)
T 3t5d_A          126 SGH----------GLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEE------CQQ--------------FKKQIM  170 (274)
T ss_dssp             CCS----------SCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHH------HHH--------------HHHHHH
T ss_pred             CCC----------CCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHH------HHH--------------HHHHHH
Confidence            763          222333445555432     689999999999864311      111              011122


Q ss_pred             HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +.+.      ..++.++.+||++++++.++++++.+.
T Consensus       171 ~~l~------~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          171 KEIQ------EHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHH------HTTCCCCCC-----------CHHHHHT
T ss_pred             HHHH------HcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            2211      134556778999999999999888764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.53  E-value=5.3e-08  Score=89.71  Aligned_cols=111  Identities=14%  Similarity=0.107  Sum_probs=70.4

Q ss_pred             CcceeeeecCCcc-------------cccccccccccCCCeEE-EEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         171 NIPFLFVDVGGQR-------------SQRRKWFQCFDSVTSIL-FLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       171 ~~~~~i~DvgGq~-------------~~r~kw~~~f~~v~~iI-fv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ...+.+|||+|+.             ..+..+..|+++++++| +|+|.++.          -...+...+.+.+.    
T Consensus       124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~----------~~~~~~~~~~~~~~----  189 (299)
T 2aka_B          124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD----------LANSDALKIAKEVD----  189 (299)
T ss_dssp             CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC----------GGGCHHHHHHHHHC----
T ss_pred             CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc----------hhhhHHHHHHHHhC----
Confidence            4789999999975             24456778898888776 79998863          11122333444332    


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC-eEEEEEeeecCchHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP-LFHHFTTAVDTENIKIV  315 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~-i~~~~tsA~d~~nI~~v  315 (334)
                      ..+.|+++|+||+|+..+.-  .   ..+                 .+...   +. ....+ ..++.+||+++.|+.++
T Consensus       190 ~~~~~~i~V~NK~Dl~~~~~--~---~~~-----------------~~~~~---~~-~~~~~~~~v~~~SA~~~~gi~~l  243 (299)
T 2aka_B          190 PQGQRTIGVITKLDLMDEGT--D---ARD-----------------VLENK---LL-PLRRGYIGVVNRSQKDIDGKKDI  243 (299)
T ss_dssp             TTCSSEEEEEECGGGSCTTC--C---CHH-----------------HHTTC---SS-CCTTCEEECCCCCCBCTTSCBCH
T ss_pred             CCCCeEEEEEEccccCCCCc--h---HHH-----------------HHhCC---cC-cCCCCcEEEECCChhhccccccH
Confidence            24689999999999865421  0   111                 01000   00 00112 35678999999999999


Q ss_pred             HHHHHH
Q psy3651         316 FNAVKN  321 (334)
Q Consensus       316 f~~v~~  321 (334)
                      |+++.+
T Consensus       244 ~~~l~~  249 (299)
T 2aka_B          244 TAALAA  249 (299)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.52  E-value=2.1e-07  Score=86.94  Aligned_cols=100  Identities=13%  Similarity=0.127  Sum_probs=65.1

Q ss_pred             CcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhcccc
Q psy3651         181 GQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSK  260 (334)
Q Consensus       181 Gq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~  260 (334)
                      +|++++.....++.++|++|+|+|+++.+.      +.+.+...+...    ..   .++|++|++||+||..+.-   .
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~------s~~~l~~~l~~~----~~---~~~~~ilV~NK~DL~~~~~---v  128 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEF------NNYLLDNMLVVY----EY---FKVEPVIVFNKIDLLNEEE---K  128 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTC------CHHHHHHHHHHH----HH---TTCEEEEEECCGGGCCHHH---H
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCC------CHHHHHHHHHHH----Hh---CCCCEEEEEEcccCCCccc---c
Confidence            477788888889999999999999998621      112233333322    22   5789999999999865320   0


Q ss_pred             chhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         261 TSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       261 ~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      ..+.              .    +.+.+..      ..+.+++|||+++.||+++|..+.
T Consensus       129 ~~~~--------------~----~~~~~~~------~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          129 KELE--------------R----WISIYRD------AGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHH--------------H----HHHHHHH------TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHH--------------H----HHHHHHH------CCCeEEEEECCCCCCHHHHHhhcc
Confidence            0011              1    1111111      235689999999999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.50  E-value=5.1e-08  Score=93.45  Aligned_cols=127  Identities=14%  Similarity=0.145  Sum_probs=60.8

Q ss_pred             eeecceeEEEEEe--eC--cceeeeecCCc-------cccccccc-------ccccCC-------------CeEEEEEeC
Q psy3651         157 KATKGITEFTIVI--SN--IPFLFVDVGGQ-------RSQRRKWF-------QCFDSV-------------TSILFLVSS  205 (334)
Q Consensus       157 ~~T~Gi~~~~~~~--~~--~~~~i~DvgGq-------~~~r~kw~-------~~f~~v-------------~~iIfv~dl  205 (334)
                      .+|+++....+.+  .+  ..+.+|||+|+       ++++..|.       .|+.++             ++++|+++.
T Consensus        76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~  155 (361)
T 2qag_A           76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP  155 (361)
T ss_dssp             --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred             CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence            3566665444433  33  47899999999       77888887       777543             457777765


Q ss_pred             CCccchhhcccccccHHHHH-HHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESR-NIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFL  284 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl-~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi  284 (334)
                      +.           ..+.+.- .++..+     ..++|+|+|+||+|+...+-      +..                  +
T Consensus       156 ~~-----------~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~e------v~~------------------~  195 (361)
T 2qag_A          156 FG-----------HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKE------RER------------------L  195 (361)
T ss_dssp             SS-----------SSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHH------HHH------------------H
T ss_pred             CC-----------CCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHH------HHH------------------H
Confidence            33           2222222 333332     25689999999999875421      111                  0


Q ss_pred             HHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         285 LNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       285 ~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      .......  ....++.++.+||+++.+ .+.|.++.+.|.+.
T Consensus       196 k~~i~~~--~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          196 KKRILDE--IEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             HHHHHHH--TTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             HHHHHHH--HHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            0011111  122456788999999999 88898888887653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.36  E-value=8.2e-07  Score=85.29  Aligned_cols=105  Identities=12%  Similarity=0.140  Sum_probs=70.2

Q ss_pred             CCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccc
Q psy3651         180 GGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTS  259 (334)
Q Consensus       180 gGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~  259 (334)
                      ..|+.+++.+.++++++++||+|+|+++++..+.     ..+.+       .     +.+.|++|++||+||.....  .
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~-----~~l~~-------~-----l~~~piilV~NK~DLl~~~~--~  116 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSFI-----PGLPR-------F-----AADNPILLVGNKADLLPRSV--K  116 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGCC-----SSHHH-------H-----CTTSCEEEEEECGGGSCTTC--C
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCCchh-----hHHHH-------H-----hCCCCEEEEEEChhcCCCcc--C
Confidence            4689999999999999999999999999853211     12221       1     34689999999999975422  1


Q ss_pred             cchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         260 KTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       260 ~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                                       .+.+.+++.+.+....   -+...++.+||+++.|++++++.+.+..
T Consensus       117 -----------------~~~~~~~l~~~~~~~g---~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          117 -----------------YPKLLRWMRRMAEELG---LCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             -----------------HHHHHHHHHHHHHTTT---CCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHHcC---CCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence                             1222334444333221   1223678999999999999999887643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.30  E-value=4.8e-07  Score=86.93  Aligned_cols=103  Identities=16%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             CcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhcccc
Q psy3651         181 GQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSK  260 (334)
Q Consensus       181 Gq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~  260 (334)
                      .++.+++.+.+++++++++|+|+|+++++..+            ...+.+.     ..+.|++|++||+||..+..  ..
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~------------~~~l~~~-----~~~~p~ilV~NK~DL~~~~~--~~  115 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSW------------LPGLHRF-----VGNNKVLLVGNKADLIPKSV--KH  115 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHC------------CTTHHHH-----SSSSCEEEEEECGGGSCTTS--CH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCcccH------------HHHHHHH-----hCCCcEEEEEEChhcCCccc--CH
Confidence            56789999999999999999999999863111            1111221     24789999999999965422  11


Q ss_pred             chhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         261 TSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       261 ~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                                       +.+.+++...+....   -+...++.+||+++.||+++++.+.+.
T Consensus       116 -----------------~~~~~~l~~~~~~~g---~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          116 -----------------DKVKHWMRYSAKQLG---LKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             -----------------HHHHHHHHHHHHHTT---CCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHcC---CCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence                             122234443333221   122368899999999999999988653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.30  E-value=1.1e-06  Score=79.89  Aligned_cols=85  Identities=9%  Similarity=0.118  Sum_probs=56.0

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccccccccccccc---------CCCeEEEEEeCCCccchhhcccccccH-HHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFD---------SVTSILFLVSSSEYDQTLVEDRRTNRL-HESRNIF  228 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~---------~v~~iIfv~dls~~d~~l~ed~~~nrl-~esl~lf  228 (334)
                      |.......+..++..+.+|||+|+..++.....+++         +++++|||++++... .       ... .+.+..+
T Consensus        71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~-------~~~~~~~~~~l  142 (262)
T 3def_A           71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-V-------DELDKQVVIAI  142 (262)
T ss_dssp             CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-C-------CHHHHHHHHHH
T ss_pred             ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-C-------CHHHHHHHHHH
Confidence            344445566778889999999999888766655554         789999999987741 0       111 1333333


Q ss_pred             HHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         229 DTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       229 ~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      ...+...  ...|+++++||+|+..
T Consensus       143 ~~~~~~~--~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          143 TQTFGKE--IWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             HHHHCGG--GGGGEEEEEECTTCCC
T ss_pred             HHHhchh--hhcCEEEEEeCcccCC
Confidence            3333211  1248999999999853

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.26  E-value=4e-06  Score=72.64  Aligned_cols=118  Identities=12%  Similarity=0.146  Sum_probs=69.5

Q ss_pred             EEeeCcceeeeecCCcccc----------cccccccc---cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         167 IVISNIPFLFVDVGGQRSQ----------RRKWFQCF---DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       167 ~~~~~~~~~i~DvgGq~~~----------r~kw~~~f---~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.+.+ .+.+||++|+...          ++....++   ..++++++|+|++...          +..+ ..+ ...+.
T Consensus        68 ~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~----------~~~~-~~~-~~~~~  134 (210)
T 1pui_A           68 FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL----------KDLD-QQM-IEWAV  134 (210)
T ss_dssp             EEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC----------CHHH-HHH-HHHHH
T ss_pred             EEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC----------chhH-HHH-HHHHH
Confidence            33444 7889999998531          22223455   4789999999998752          2111 011 11122


Q ss_pred             hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         234 NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       234 ~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .   .+.|+++++||+|+....-  ....+              +.+..++        ......+..+.|||+++.++.
T Consensus       135 ~---~~~~~~~v~nK~D~~s~~~--~~~~~--------------~~~~~~~--------~~~~~~~~~~~~Sal~~~~~~  187 (210)
T 1pui_A          135 D---SNIAVLVLLTKADKLASGA--RKAQL--------------NMVREAV--------LAFNGDVQVETFSSLKKQGVD  187 (210)
T ss_dssp             H---TTCCEEEEEECGGGSCHHH--HHHHH--------------HHHHHHH--------GGGCSCEEEEECBTTTTBSHH
T ss_pred             H---cCCCeEEEEecccCCCchh--HHHHH--------------HHHHHHH--------HhcCCCCceEEEeecCCCCHH
Confidence            1   4578999999999865311  00000              1111111        111234678899999999999


Q ss_pred             HHHHHHHHHHH
Q psy3651         314 IVFNAVKNTIL  324 (334)
Q Consensus       314 ~vf~~v~~~I~  324 (334)
                      ++++++.+.+.
T Consensus       188 ~l~~~l~~~~~  198 (210)
T 1pui_A          188 KLRQKLDTWFS  198 (210)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.20  E-value=1.4e-06  Score=92.22  Aligned_cols=68  Identities=12%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+|||+|+..++..|..+++.++++|+|+|.++-          .. .+....|.....    .+.|+++|+||+|
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g----------~~-~qt~~~~~~~~~----~~~p~ilviNK~D  161 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG----------VC-VQTETVLRQALG----ERIKPVVVINKVD  161 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB----------SC-HHHHHHHHHHHH----TTCEEEEEEECHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC----------CC-HHHHHHHHHHHH----cCCCeEEEEECCC
Confidence            68899999999999999999999999999999999985          22 233455555543    4689999999999


Q ss_pred             cch
Q psy3651         251 LLA  253 (334)
Q Consensus       251 l~~  253 (334)
                      +..
T Consensus       162 ~~~  164 (842)
T 1n0u_A          162 RAL  164 (842)
T ss_dssp             HHH
T ss_pred             cch
Confidence            874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.15  E-value=3.9e-06  Score=75.51  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=69.1

Q ss_pred             cceeeeecCCccccccccc------ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEE
Q psy3651         172 IPFLFVDVGGQRSQRRKWF------QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILF  245 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~------~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~  245 (334)
                      ..+.+|||+|+......+.      ..+.+ +.+|+++|.+.....       ..+.............   .+.|++++
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~-------~~~~~~~~~~~~~~~~---~~~p~~iv  177 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKP-------NDYCFVRFFALLIDLR---LGATTIPA  177 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSH-------HHHHHHHHHHHHHHHH---HTSCEEEE
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCH-------HHHHHHHHHHHHHhcc---cCCCeEEE
Confidence            4678999999986543221      24567 999999998754111       1111111111111111   35799999


Q ss_pred             EeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH-----HHHH--h----hccCCCCCeEEEEEeeecCchHHH
Q psy3651         246 LNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL-----NYFK--A----VKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       246 lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~-----~~F~--~----l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                      +||+|+....   ....+.+++.+       .+...+.+.     .+|.  .    +... .....++.+||+++.|+++
T Consensus       178 ~NK~D~~~~~---~~~~~~~~l~~-------~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~  246 (262)
T 1yrb_A          178 LNKVDLLSEE---EKERHRKYFED-------IDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFED  246 (262)
T ss_dssp             ECCGGGCCHH---HHHHHHHHHHC-------HHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHH
T ss_pred             Eecccccccc---cHHHHHHHHhC-------hHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHH
Confidence            9999986532   11111211100       000000110     0000  0    0000 1223578999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         315 VFNAVKNTIL  324 (334)
Q Consensus       315 vf~~v~~~I~  324 (334)
                      +++++.+.+-
T Consensus       247 l~~~i~~~~~  256 (262)
T 1yrb_A          247 LETLAYEHYC  256 (262)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.12  E-value=1.7e-05  Score=79.98  Aligned_cols=93  Identities=16%  Similarity=0.265  Sum_probs=69.3

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      -||.|-+    +.|.-|+-.....+.+++.+++|+||.|+-.|-.=-...++-+|++|+|+|..+           --..
T Consensus        75 ~D~~~~E----reRGITI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~-----------GV~~  139 (548)
T 3vqt_A           75 SDWMAME----RERGISVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAK-----------GVEA  139 (548)
T ss_dssp             -----------------CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTT-----------BSCH
T ss_pred             cCChHHH----HHCCCcEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCC-----------Cccc
Confidence            4566654    556677777788899999999999999999887766677888999999999998           6777


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      .+..+|+....    .+.|+++|.||+|....
T Consensus       140 qT~~v~~~a~~----~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          140 QTRKLMDVCRM----RATPVMTFVNKMDREAL  167 (548)
T ss_dssp             HHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred             ccHHHHHHHHH----hCCceEEEEecccchhc
Confidence            88889988765    57899999999998653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.11  E-value=4.8e-06  Score=86.33  Aligned_cols=128  Identities=16%  Similarity=0.201  Sum_probs=78.4

Q ss_pred             cceeeeecCCccc---ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         172 IPFLFVDVGGQRS---QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       172 ~~~~i~DvgGq~~---~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      ..+.+|||+|...   ....+..|+.++|+||||+|.++.          ....+ ...+...+..   .+.|+++|+||
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~----------~s~~e-~~~l~~~l~~---~~~~iiiVlNK  239 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQP----------CTLGE-RRYLENYIKG---RGLTVFFLVNA  239 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTST----------TCHHH-HHHHHHHTTT---SCCCEEEEEEC
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCc----------cchhH-HHHHHHHHHh---hCCCEEEEEEC
Confidence            5799999999765   456778899999999999999875          22222 3334333322   25689999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH----HHHHhhccC---CCCCeEEEEEeee--------------
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL----NYFKAVKRD---EKKPLFHHFTTAV--------------  307 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~----~~F~~l~~~---~~~~i~~~~tsA~--------------  307 (334)
                      +|+...... ......           ..+.+.+.+.    .........   ......++.+||+              
T Consensus       240 ~Dl~~~~~~-~~ee~e-----------~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~  307 (695)
T 2j69_A          240 WDQVRESLI-DPDDVE-----------ELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADL  307 (695)
T ss_dssp             GGGGGGGCS-STTCHH-----------HHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCC
T ss_pred             ccccccccc-ChhhHH-----------HHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhh
Confidence            998654310 000000           0111112222    221111110   0112357899999              


Q ss_pred             cCchHHHHHHHHHHHHHH
Q psy3651         308 DTENIKIVFNAVKNTILH  325 (334)
Q Consensus       308 d~~nI~~vf~~v~~~I~~  325 (334)
                      ++.|+.+++.++.+.+..
T Consensus       308 ~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          308 DGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TTSSHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHH
Confidence            999999999999887754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.06  E-value=1.3e-05  Score=76.37  Aligned_cols=114  Identities=13%  Similarity=0.080  Sum_probs=70.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+..+.||||+|-..   -.......+|.+|+|+|.+..++.       ..+.            ....+.|++|++||+
T Consensus       170 ~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~-------~~l~------------~~~~~~p~ivVlNK~  227 (355)
T 3p32_A          170 AGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQL-------QGIK------------KGVLELADIVVVNKA  227 (355)
T ss_dssp             TTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTT-------TTCC------------TTSGGGCSEEEEECC
T ss_pred             CCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccH-------HHHH------------HhHhhcCCEEEEECC
Confidence            468899999999543   233445899999999998765321       0000            112335899999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC-CCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~-~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+..+.-      .              +...+.+.+.+....... .....++.+||++++||.++++++.+.+..
T Consensus       228 Dl~~~~~------~--------------~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          228 DGEHHKE------A--------------RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CGGGHHH------H--------------HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCcChhH------H--------------HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            9864321      0              011112222211111111 123568899999999999999999887643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.05  E-value=3.8e-06  Score=80.04  Aligned_cols=71  Identities=14%  Similarity=0.162  Sum_probs=52.6

Q ss_pred             CcceeeeecCCcccc-------------cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         171 NIPFLFVDVGGQRSQ-------------RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~-------------r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ...+.+||++|+...             +.....|+.++++||+|+|.++.+.         ...+++.+...+.    -
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~---------~~~~~~~l~~~~~----~  201 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL---------ATSDAIKISREVD----P  201 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG---------GGCHHHHHHHHSC----T
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc---------CCHHHHHHHHHhc----c
Confidence            468999999999876             6677889999999999998876421         1134444444432    2


Q ss_pred             CCCcEEEEEeCCCcchh
Q psy3651         238 RNVSFILFLNKTDLLAE  254 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~e  254 (334)
                      .+.|+++++||+|+..+
T Consensus       202 ~~~~~i~V~nK~Dl~~~  218 (360)
T 3t34_A          202 SGDRTFGVLTKIDLMDK  218 (360)
T ss_dssp             TCTTEEEEEECGGGCCT
T ss_pred             cCCCEEEEEeCCccCCC
Confidence            46799999999998754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.03  E-value=1.2e-05  Score=73.31  Aligned_cols=79  Identities=10%  Similarity=0.045  Sum_probs=49.6

Q ss_pred             EEEEEeeCcceeeeecCCccccccccc-------cc--ccCCCeEEEEEeCCCccchhhcccccccHH-HHHHHHHHHHh
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWF-------QC--FDSVTSILFLVSSSEYDQTLVEDRRTNRLH-ESRNIFDTIIN  233 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~-------~~--f~~v~~iIfv~dls~~d~~l~ed~~~nrl~-esl~lf~~i~~  233 (334)
                      ...+..++.++.+|||+|+........       .|  ..+++++|||+|++..           ++. ....+++.+..
T Consensus        79 ~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-----------~~~~~~~~~~~~l~~  147 (270)
T 1h65_A           79 MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-----------RVDNLDKLVAKAITD  147 (270)
T ss_dssp             EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-----------CCCHHHHHHHHHHHH
T ss_pred             EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-----------cCCHHHHHHHHHHHH
Confidence            344556778999999999987653222       22  3479999999998763           221 11233333332


Q ss_pred             hcC-CCCCcEEEEEeCCCcch
Q psy3651         234 NVI-FRNVSFILFLNKTDLLA  253 (334)
Q Consensus       234 ~~~-~~~~piiL~lNK~Dl~~  253 (334)
                      ... -...|+++++||+|+..
T Consensus       148 ~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          148 SFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             HHCGGGGGGEEEEEECCSCCC
T ss_pred             HhCcccccCEEEEEECcccCC
Confidence            100 01269999999999854

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.02  E-value=1.1e-05  Score=78.64  Aligned_cols=118  Identities=14%  Similarity=0.186  Sum_probs=73.1

Q ss_pred             EEeeC-cceeeeecCCccc----cccccccc---ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh-cCC
Q psy3651         167 IVISN-IPFLFVDVGGQRS----QRRKWFQC---FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN-VIF  237 (334)
Q Consensus       167 ~~~~~-~~~~i~DvgGq~~----~r~kw~~~---f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~-~~~  237 (334)
                      +...+ ..+.+||+.|+..    .+..+..+   .+.++.+|+|+|++ .          ..+.+...+..++... +.+
T Consensus       199 V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~----------~~~~~ls~g~~el~~la~aL  267 (416)
T 1udx_A          199 VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-D----------EPLKTLETLRKEVGAYDPAL  267 (416)
T ss_dssp             EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-S----------CHHHHHHHHHHHHHHHCHHH
T ss_pred             EEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-c----------CCHHHHHHHHHHHHHHhHHh
Confidence            34443 7789999999843    22233333   35799999999998 2          2333332333333221 112


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .+.|.+|++||+|+.....   ...                     +.+.+.      ...+.++.+||+++++|+++++
T Consensus       268 ~~~P~ILVlNKlDl~~~~~---~~~---------------------l~~~l~------~~g~~vi~iSA~~g~gi~eL~~  317 (416)
T 1udx_A          268 LRRPSLVALNKVDLLEEEA---VKA---------------------LADALA------REGLAVLPVSALTGAGLPALKE  317 (416)
T ss_dssp             HHSCEEEEEECCTTSCHHH---HHH---------------------HHHHHH------TTTSCEEECCTTTCTTHHHHHH
T ss_pred             hcCCEEEEEECCChhhHHH---HHH---------------------HHHHHH------hcCCeEEEEECCCccCHHHHHH
Confidence            3568999999999864311   111                     111111      1235688999999999999999


Q ss_pred             HHHHHHHH
Q psy3651         318 AVKNTILH  325 (334)
Q Consensus       318 ~v~~~I~~  325 (334)
                      ++.+.+.+
T Consensus       318 ~i~~~l~~  325 (416)
T 1udx_A          318 ALHALVRS  325 (416)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.01  E-value=2.4e-05  Score=68.38  Aligned_cols=108  Identities=12%  Similarity=0.050  Sum_probs=66.4

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+..+.+||++|+-...   .++..+.+.+|+|+|.++.+.         ...    .+....      +.|+++++||+
T Consensus       107 ~~~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~---------~~~----~~~~~~------~~~~iiv~NK~  164 (221)
T 2wsm_A          107 SDCDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD---------VVE----KHPEIF------RVADLIVINKV  164 (221)
T ss_dssp             TTCSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT---------HHH----HCHHHH------HTCSEEEEECG
T ss_pred             CCCCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch---------hhh----hhhhhh------hcCCEEEEecc
Confidence            35678899999972111   112236788999999987521         110    111111      36889999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+....-    .              +.+.+.+++..    +    ...+.++.+||+++.|+.++|+++.+.+..
T Consensus       165 Dl~~~~~----~--------------~~~~~~~~~~~----~----~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          165 ALAEAVG----A--------------DVEKMKADAKL----I----NPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             GGHHHHT----C--------------CHHHHHHHHHH----H----CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             cCCcchh----h--------------HHHHHHHHHHH----h----CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            9865310    0              11222223322    1    124678899999999999999999987754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.99  E-value=6e-06  Score=76.52  Aligned_cols=72  Identities=18%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             eCcceeeeecCCccc-------------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         170 SNIPFLFVDVGGQRS-------------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~-------------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .+..+.+|||+|...             .+..+..++.+++++|+|+|.++.+..       +.  +...+.+.+ .   
T Consensus       129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~--~~~~i~~~~-~---  195 (315)
T 1jwy_B          129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NS--DALQLAKEV-D---  195 (315)
T ss_dssp             TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TC--SHHHHHHHH-C---
T ss_pred             CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hh--HHHHHHHHh-C---
Confidence            357899999999864             455677889999999999998654210       01  112233322 1   


Q ss_pred             CCCCcEEEEEeCCCcchh
Q psy3651         237 FRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~e  254 (334)
                      -.+.|+++|+||+|+...
T Consensus       196 ~~~~~~i~v~NK~Dl~~~  213 (315)
T 1jwy_B          196 PEGKRTIGVITKLDLMDK  213 (315)
T ss_dssp             SSCSSEEEEEECTTSSCS
T ss_pred             CCCCcEEEEEcCcccCCc
Confidence            146899999999998653

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.91  E-value=4e-06  Score=79.76  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=64.2

Q ss_pred             CcceeeeecCCccc-------------ccccccccccCCCeEEE-EEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         171 NIPFLFVDVGGQRS-------------QRRKWFQCFDSVTSILF-LVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       171 ~~~~~i~DvgGq~~-------------~r~kw~~~f~~v~~iIf-v~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ...+.+|||+|...             .+..+..|+.+.+.+|+ |+|.+.. -         .-.+.+.+.+.+.    
T Consensus       129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~-~---------~~~~~~~i~~~~~----  194 (353)
T 2x2e_A          129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD-L---------ANSDALKVAKEVD----  194 (353)
T ss_dssp             CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC-G---------GGCHHHHHHHHHC----
T ss_pred             CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc-c---------chhHHHHHHHHhC----
Confidence            47899999999743             34566678876665555 5554431 0         1112333444432    


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC-eEEEEEeeecCchHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP-LFHHFTTAVDTENIKIV  315 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~-i~~~~tsA~d~~nI~~v  315 (334)
                      ..+.|+++|+||+|+..+.-  ...++                    +..+   . .....+ ..++.+||+++.|+.++
T Consensus       195 ~~~~~~i~V~NK~Dl~~~~~--~~~~~--------------------~~~~---~-~~l~~~~~~v~~~SA~~~~~i~~l  248 (353)
T 2x2e_A          195 PQGQRTIGVITKLDLMDEGT--DARDV--------------------LENK---L-LPLRRGYIGVVNRSQKDIDGKKDI  248 (353)
T ss_dssp             TTCTTEEEEEECGGGSCTTC--CCHHH--------------------HTTC---S-SCCTTCEEECCCCCHHHHHTTCCH
T ss_pred             cCCCceEEEeccccccCcch--hHHHH--------------------HhCC---c-ccccCCceEEEeCCcccccccccH
Confidence            24689999999999865321  11111                    0000   0 000122 24567999999999988


Q ss_pred             HHHHHH
Q psy3651         316 FNAVKN  321 (334)
Q Consensus       316 f~~v~~  321 (334)
                      ++++.+
T Consensus       249 ~~~l~~  254 (353)
T 2x2e_A          249 TAALAA  254 (353)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888765

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.80  E-value=7.8e-06  Score=83.94  Aligned_cols=93  Identities=16%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      -||.|-+    +.|.-|+-.....+.+++.+++++||.|+..|-.--....+-+|++|+|+|..+           --..
T Consensus        42 ~D~~~~E----reRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~-----------GV~~  106 (638)
T 3j25_A           42 TDNTLLE----RQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKD-----------GVQA  106 (638)
T ss_dssp             TTCSTTH----HHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSC-----------TTCS
T ss_pred             cCCcHHH----HhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCC-----------CCcH
Confidence            3455543    445556666667788899999999999999987777777889999999999988           4555


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      ....+|+....    .+.|.|+|.||+|....
T Consensus       107 qT~~v~~~a~~----~~lp~i~~INKmDr~~a  134 (638)
T 3j25_A          107 QTRILFHALRK----MGIPTIFFINKIDQNGI  134 (638)
T ss_dssp             HHHHHHHHHHH----HTCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHHH----cCCCeEEEEeccccccC
Confidence            67778887766    45789999999998654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.50  E-value=0.00022  Score=67.36  Aligned_cols=113  Identities=12%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ++..+.+|||+|......   .....+|++|+|+|.+..+..       ..+..      ..      .+.|.++|+||+
T Consensus       147 ~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~-------~~l~~------~~------~~~p~ivv~NK~  204 (341)
T 2p67_A          147 AGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDL-------QGIKK------GL------MEVADLIVINKD  204 (341)
T ss_dssp             TTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC-------------CCCCH------HH------HHHCSEEEECCC
T ss_pred             cCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHH-------HHHHH------hh------hcccCEEEEECC
Confidence            468899999999764332   245899999999999875321       11111      11      135789999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      |+....-      +.              .+.+-++..+..+... ......++.+||+++.|+..+++++.+.+.
T Consensus       205 Dl~~~~~------~~--------------~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          205 DGDNHTN------VA--------------IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CTTCHHH------HH--------------HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CCCChHH------HH--------------HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            9864310      00              0111122221111110 011346788999999999999999988654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.48  E-value=0.00028  Score=73.21  Aligned_cols=86  Identities=14%  Similarity=0.142  Sum_probs=62.7

Q ss_pred             ceeeeecceeEEEEEee-------CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHH
Q psy3651         154 HARKATKGITEFTIVIS-------NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRN  226 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~-------~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~  226 (334)
                      +.|.-|+--....+.++       ++.++++||.|+-.|..=-....+-+|++|.|+|..+           --......
T Consensus        60 ~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDave-----------GV~~qT~~  128 (709)
T 4fn5_A           60 QERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTS-----------GVEPQSET  128 (709)
T ss_dssp             --------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTT-----------CSCHHHHH
T ss_pred             HHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCC-----------CCchhHHH
Confidence            34555555555566553       5789999999999876656666778999999999998           56677888


Q ss_pred             HHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         227 IFDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       227 lf~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      +|+....    .+.|+++|.||+|....
T Consensus       129 v~~~a~~----~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A          129 VWRQANK----YGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             HHHHHHH----HTCCEEEEEECSSSTTC
T ss_pred             HHHHHHH----cCCCeEEEEccccccCc
Confidence            8988876    46899999999998653

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.47  E-value=5.1e-05  Score=76.56  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=49.8

Q ss_pred             cceeeeecCCccc-----------ccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651         172 IPFLFVDVGGQRS-----------QRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV  240 (334)
Q Consensus       172 ~~~~i~DvgGq~~-----------~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~  240 (334)
                      ..+.+|||+|+..           +...+..++..+++||||+|.++.          ....+...+++.+..    .+.
T Consensus       154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~----------~~~~~~~~~l~~l~~----~~~  219 (550)
T 2qpt_A          154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL----------EISDEFSEAIGALRG----HED  219 (550)
T ss_dssp             HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC----------CCCHHHHHHHHHTTT----CGG
T ss_pred             CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC----------CCCHHHHHHHHHHHh----cCC
Confidence            3689999999975           345667788999999999999885          223333444444322    357


Q ss_pred             cEEEEEeCCCcch
Q psy3651         241 SFILFLNKTDLLA  253 (334)
Q Consensus       241 piiL~lNK~Dl~~  253 (334)
                      |+++|+||+|+..
T Consensus       220 pvilVlNK~Dl~~  232 (550)
T 2qpt_A          220 KIRVVLNKADMVE  232 (550)
T ss_dssp             GEEEEEECGGGSC
T ss_pred             CEEEEEECCCccC
Confidence            9999999999874

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.41  E-value=3.9e-05  Score=71.43  Aligned_cols=110  Identities=11%  Similarity=0.116  Sum_probs=55.5

Q ss_pred             cceeeeecCCc-------cccccccc-------ccccCC-------------CeEEEEEeCCC--ccchhhcccccccHH
Q psy3651         172 IPFLFVDVGGQ-------RSQRRKWF-------QCFDSV-------------TSILFLVSSSE--YDQTLVEDRRTNRLH  222 (334)
Q Consensus       172 ~~~~i~DvgGq-------~~~r~kw~-------~~f~~v-------------~~iIfv~dls~--~d~~l~ed~~~nrl~  222 (334)
                      ..+++||++|+       +.++..+.       .|+.+.             ++++|+.+.+.  .|.          ..
T Consensus        76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~----------~~  145 (301)
T 2qnr_A           76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKP----------LD  145 (301)
T ss_dssp             EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCH----------HH
T ss_pred             cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCH----------HH
Confidence            57899999999       55666655       565433             34677766432  321          11


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEE
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHH  302 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~  302 (334)
                        +++...+     ..+.++++|+||.|+...+-      +..          ..+.+.+++.          ..++.++
T Consensus       146 --~~~l~~l-----~~~~~iilV~~K~Dl~~~~e------~~~----------~~~~~~~~~~----------~~~~~~~  192 (301)
T 2qnr_A          146 --VAFMKAI-----HNKVNIVPVIAKADTLTLKE------RER----------LKKRILDEIE----------EHNIKIY  192 (301)
T ss_dssp             --HHHHHHH-----TTTSCEEEEECCGGGSCHHH------HHH----------HHHHHHHHHH----------HTTCCCC
T ss_pred             --HHHHHHH-----HhcCCEEEEEEeCCCCCHHH------HHH----------HHHHHHHHHH----------HcCCeEE
Confidence              2333333     14579999999999865321      100          0111221221          1236678


Q ss_pred             EEeeecCchHHHHHHHHHHHHHH
Q psy3651         303 FTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       303 ~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      ++||+++ |+.++|.++.+.+.+
T Consensus       193 e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          193 HLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             CCC----------CHHHHHHHHT
T ss_pred             ecCCccc-cccHHHHHHHHHhhc
Confidence            9999999 999999999988764

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.37  E-value=0.00063  Score=64.54  Aligned_cols=112  Identities=15%  Similarity=0.146  Sum_probs=63.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+..+.++||+|-.   ..+....+.++.+++|+|.+..+          .... +.  ..+      ...|.++++||+
T Consensus       165 ~~~~~iliDT~Gi~---~~~~~l~~~~d~vl~V~d~~~~~----------~~~~-i~--~~i------l~~~~ivVlNK~  222 (349)
T 2www_A          165 AGYDIILIETVGVG---QSEFAVADMVDMFVLLLPPAGGD----------ELQG-IK--RGI------IEMADLVAVTKS  222 (349)
T ss_dssp             TTCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCC
T ss_pred             CCCCEEEEECCCcc---hhhhhHHhhCCEEEEEEcCCcch----------hHHH-hH--HHH------HhcCCEEEEeee
Confidence            56788999999964   23455678999999999998742          1110 00  011      235789999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+....-  ....+..                  +......+... ......++.|||+++.|+.+++++|.+.+
T Consensus       223 Dl~~~~~--~~~~~~~------------------l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          223 DGDLIVP--ARRIQAE------------------YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             SGGGHHH--HHHHHHH------------------HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCchh--HHHHHHH------------------HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence            9864210  0000000                  11000000100 01234678899999999999999998865

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.34  E-value=9.9e-05  Score=71.46  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=24.9

Q ss_pred             cceeeeecCCccc----cc---ccccccccCCCeEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRS----QR---RKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       172 ~~~~i~DvgGq~~----~r---~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      ..+.+|||+|+..    .+   ..+..++++++++|+|+|+++.
T Consensus        71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            5799999999853    22   2334567899999999999885

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.20  E-value=0.00017  Score=66.57  Aligned_cols=99  Identities=16%  Similarity=0.221  Sum_probs=63.5

Q ss_pred             CCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccc
Q psy3651         180 GGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTS  259 (334)
Q Consensus       180 gGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~  259 (334)
                      |.....++.+....+.+++||+|+|..+...        .+ ...   ++++     ..+.|.++++||+||.....   
T Consensus         8 Ghm~ka~~~~~~~l~~aDvVl~VvDAr~p~~--------~~-~~~---l~~~-----l~~kp~ilVlNK~DL~~~~~---   67 (282)
T 1puj_A            8 GHMAKARREVTEKLKLIDIVYELVDARIPMS--------SR-NPM---IEDI-----LKNKPRIMLLNKADKADAAV---   67 (282)
T ss_dssp             -CTTHHHHHHHHHGGGCSEEEEEEETTSTTT--------TS-CHH---HHHH-----CSSSCEEEEEECGGGSCHHH---
T ss_pred             hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc--------cC-CHH---HHHH-----HCCCCEEEEEECcccCCHHH---
Confidence            3333455666677899999999999988622        11 011   1122     25789999999999865311   


Q ss_pred             cchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         260 KTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       260 ~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                         ...              ..+|+    .      ...+.++++||+++.++.++++.+.+.+-.
T Consensus        68 ---~~~--------------~~~~~----~------~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           68 ---TQQ--------------WKEHF----E------NQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             ---HHH--------------HHHHH----H------TTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ---HHH--------------HHHHH----H------hcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence               111              11111    1      123467889999999999999988876653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.09  E-value=0.00078  Score=58.74  Aligned_cols=60  Identities=10%  Similarity=0.099  Sum_probs=40.4

Q ss_pred             CcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         240 VSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       240 ~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                      .|++|++||+|+..++-    ..              .+.+.+++...        .....+++|||+++.||.++|+++
T Consensus       165 ~~~iiv~NK~Dl~~~~~----~~--------------~~~~~~~~~~~--------~~~~~~~~~Sa~~g~gv~~l~~~l  218 (226)
T 2hf9_A          165 TADLIVINKIDLADAVG----AD--------------IKKMENDAKRI--------NPDAEVVLLSLKTMEGFDKVLEFI  218 (226)
T ss_dssp             TCSEEEEECGGGHHHHT----CC--------------HHHHHHHHHHH--------CTTSEEEECCTTTCTTHHHHHHHH
T ss_pred             cCCEEEEeccccCchhH----HH--------------HHHHHHHHHHh--------CCCCeEEEEEecCCCCHHHHHHHH
Confidence            57899999999865421    01              11222222221        123578999999999999999999


Q ss_pred             HHHHHH
Q psy3651         320 KNTILH  325 (334)
Q Consensus       320 ~~~I~~  325 (334)
                      .+.+..
T Consensus       219 ~~~~~~  224 (226)
T 2hf9_A          219 EKSVKE  224 (226)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.68  E-value=0.0041  Score=59.34  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             cceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCc
Q psy3651         172 IPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      ..+++||++|+....       ..+..++++++++++|+|+++-
T Consensus        66 ~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~~  109 (363)
T 1jal_A           66 TTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFEN  109 (363)
T ss_dssp             CEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred             eEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence            579999999998642       3344567999999999999973

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=96.65  E-value=0.00094  Score=69.65  Aligned_cols=70  Identities=17%  Similarity=0.151  Sum_probs=45.5

Q ss_pred             CcceeeeecCCcccc---------cccc----cccc-cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         171 NIPFLFVDVGGQRSQ---------RRKW----FQCF-DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~---------r~kw----~~~f-~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ...+.++||+|-..-         +..|    ..|. ..++.|++|+|.+..          -.-.+.+.+.+.+..   
T Consensus       149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~----------~~~~d~l~ll~~L~~---  215 (772)
T 3zvr_A          149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD----------LANSDALKIAKEVDP---  215 (772)
T ss_dssp             CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSC----------SSSCHHHHHHHHHCT---
T ss_pred             CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCC----------cchhHHHHHHHHHHh---
Confidence            357899999996541         1223    2344 578999999999873          111233344444422   


Q ss_pred             CCCCcEEEEEeCCCcchh
Q psy3651         237 FRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~e  254 (334)
                       .+.|+++|+||+|+..+
T Consensus       216 -~g~pvIlVlNKiDlv~~  232 (772)
T 3zvr_A          216 -QGQRTIGVITKLDLMDE  232 (772)
T ss_dssp             -TCSSEEEEEECTTSSCT
T ss_pred             -cCCCEEEEEeCcccCCc
Confidence             46899999999998754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.55  E-value=0.0019  Score=61.73  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             CcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCc
Q psy3651         171 NIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      +..+++||++|+....       +.+..++++++++++|+|.++-
T Consensus        68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~  112 (368)
T 2dby_A           68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPD  112 (368)
T ss_dssp             CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCC
T ss_pred             CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCCC
Confidence            4678999999998642       2345567999999999999973

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.47  E-value=0.0058  Score=59.40  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=22.3

Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFN  317 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~  317 (334)
                      .++|+|+|+||+|+...+-      +..+          .+.+.+++..          .++.++.+||+++.++..+|.
T Consensus       166 ~~v~iIlVinK~Dll~~~e------v~~~----------k~~i~~~~~~----------~~i~~~~~sa~~~~~v~~~~~  219 (418)
T 2qag_C          166 EKVNIIPLIAKADTLTPEE------CQQF----------KKQIMKEIQE----------HKIKIYEFPETDDEEENKLVK  219 (418)
T ss_dssp             TTSEEEEEEESTTSSCHHH------HHHH----------HHHHHHHHHH----------HTCCCCCCC------------
T ss_pred             ccCcEEEEEEcccCccHHH------HHHH----------HHHHHHHHHH----------cCCeEEeCCCCCCcCHHHHHH
Confidence            3689999999999865321      1110          0111222211          134567788998888888877


Q ss_pred             HHHHH
Q psy3651         318 AVKNT  322 (334)
Q Consensus       318 ~v~~~  322 (334)
                      .+.+.
T Consensus       220 ~l~~~  224 (418)
T 2qag_C          220 KIKDR  224 (418)
T ss_dssp             -----
T ss_pred             HHHhh
Confidence            76653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.09  E-value=0.0086  Score=54.37  Aligned_cols=88  Identities=16%  Similarity=0.092  Sum_probs=54.8

Q ss_pred             cccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchh
Q psy3651         184 SQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSI  263 (334)
Q Consensus       184 ~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l  263 (334)
                      .-++.......++|.||.|+|..+.....      +..-+            +. +.|.++++||+||.....      .
T Consensus        10 ka~~~~~~~l~~~D~vl~VvDar~P~~~~------~~~l~------------ll-~k~~iivlNK~DL~~~~~------~   64 (262)
T 3cnl_A           10 KAKRQIKDLLRLVNTVVEVRDARAPFATS------AYGVD------------FS-RKETIILLNKVDIADEKT------T   64 (262)
T ss_dssp             CTTHHHHHHHTTCSEEEEEEETTSTTTTS------CTTSC------------CT-TSEEEEEEECGGGSCHHH------H
T ss_pred             HHHHHHHHHHhhCCEEEEEeeCCCCCcCc------ChHHH------------hc-CCCcEEEEECccCCCHHH------H
Confidence            33445566778999999999998762211      11101            11 689999999999865321      1


Q ss_pred             hhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHH
Q psy3651         264 AEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKN  321 (334)
Q Consensus       264 ~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~  321 (334)
                      ..+              .+|+    ..      .++.+ .+||+++.|+..+++.+.+
T Consensus        65 ~~~--------------~~~~----~~------~g~~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           65 KKW--------------VEFF----KK------QGKRV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             HHH--------------HHHH----HH------TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred             HHH--------------HHHH----HH------cCCeE-EEECCCCcCHHHHHHHHHH
Confidence            111              1111    11      12345 8999999999998877644

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.67  E-value=0.016  Score=54.49  Aligned_cols=111  Identities=9%  Similarity=0.082  Sum_probs=61.4

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      .+..+.++||+|.....   ....+.++.+++|+|.+..+..       ..+.+      .+.      ..+.++++||.
T Consensus       146 ~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~-------~~i~~------~i~------~~~~ivvlNK~  203 (337)
T 2qm8_A          146 AGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDEL-------QGIKK------GIF------ELADMIAVNKA  203 (337)
T ss_dssp             TTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC-------------CCT------THH------HHCSEEEEECC
T ss_pred             CCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccH-------HHHHH------HHh------ccccEEEEEch
Confidence            57889999999986422   2345789999999998653210       00000      011      12557778999


Q ss_pred             Ccchh-hhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCC--CCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAE-KLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDE--KKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~e-ki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~--~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+... ..  ......                  -+... ..+....  .....++.|||+++.|+.++++.+.+..
T Consensus       204 Dl~~~~~~--s~~~~~------------------~l~~a-~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          204 DDGDGERR--ASAAAS------------------EYRAA-LHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             STTCCHHH--HHHHHH------------------HHHHH-HTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             hccCchhH--HHHHHH------------------HHHHH-HHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            96431 11  000000                  01100 1111100  0122467799999999999999988754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=94.63  E-value=0.032  Score=53.76  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=25.6

Q ss_pred             cceeeeecCCcccccc-------cccccccCCCeEEEEEeCCCccc
Q psy3651         172 IPFLFVDVGGQRSQRR-------KWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~-------kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      ..+++||++|+...+.       .|..+++++++|++|+|+++.+.
T Consensus        86 ~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           86 AFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             CEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            3589999999987554       68889999999999999997544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=94.44  E-value=0.025  Score=52.65  Aligned_cols=51  Identities=16%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         191 QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       191 ~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      .--.++|.|++|+|+.+.+-        + ..    +++..+-.-+-.+.|.+|++||+||...
T Consensus        82 ~~~anvD~v~~V~~~~~p~~--------~-~~----~i~r~L~~~~~~~~~~vivlnK~DL~~~  132 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSF--------S-TA----LLDRFLVLVEANDIQPIICITKMDLIED  132 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTC--------C-HH----HHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred             HHHHhCCEEEEEEeCCCCCC--------C-HH----HHHHHHHHHHHCCCCEEEEEECCccCch
Confidence            35689999999999987521        1 11    1222221112357899999999998653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=93.29  E-value=0.084  Score=50.13  Aligned_cols=87  Identities=14%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             cccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCC
Q psy3651         192 CFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE  271 (334)
Q Consensus       192 ~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~  271 (334)
                      .-.++|.|++|.+.. .+      .+.+.++..+..-+       ..+.|.+|++||+||.....   ...+..      
T Consensus       127 i~anvD~v~iv~a~~-P~------~~~~~i~r~L~~a~-------~~~~~~iivlNK~DL~~~~~---~~~~~~------  183 (358)
T 2rcn_A          127 IAANIDQIVIVSAIL-PE------LSLNIIDRYLVGCE-------TLQVEPLIVLNKIDLLDDEG---MDFVNE------  183 (358)
T ss_dssp             EEECCCEEEEEEEST-TT------CCHHHHHHHHHHHH-------HHTCEEEEEEECGGGCCHHH---HHHHHH------
T ss_pred             HHhcCCEEEEEEeCC-CC------CCHHHHHHHHHHHH-------hcCCCEEEEEECccCCCchh---HHHHHH------
Confidence            357999999887653 31      11222322222111       13578899999999865421   000111      


Q ss_pred             CCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         272 GDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       272 g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                                 + ...|..      ..+.++++||.++.+++.+...+
T Consensus       184 -----------~-~~~y~~------~G~~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          184 -----------Q-MDIYRN------IGYRVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             -----------H-HHHHHT------TTCCEEECBTTTTBTHHHHHHHH
T ss_pred             -----------H-HHHHHh------CCCcEEEEecCCCcCHHHHHHhc
Confidence                       1 122222      23458899999999998876543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=90.63  E-value=0.21  Score=47.74  Aligned_cols=78  Identities=8%  Similarity=0.089  Sum_probs=48.5

Q ss_pred             eEEEEEeeCcceeeeecCCcccccc-------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh-h
Q psy3651         163 TEFTIVISNIPFLFVDVGGQRSQRR-------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN-N  234 (334)
Q Consensus       163 ~~~~~~~~~~~~~i~DvgGq~~~r~-------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~-~  234 (334)
                      ....+.+.+.++++.|++|-.....       ......+.+++|++|+|.++.          -  .+...+..++.. .
T Consensus       110 ~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p----------~--~~~~~i~~EL~~~~  177 (376)
T 4a9a_A          110 VPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKP----------L--HHKQIIEKELEGVG  177 (376)
T ss_dssp             EEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSH----------H--HHHHHHHHHHHHTT
T ss_pred             eeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCcc----------H--HHHHHHHHHHHHhh
Confidence            3345667889999999999754321       223345789999999999874          1  111111122211 1


Q ss_pred             cCCCCCcEEEEEeCCCcc
Q psy3651         235 VIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~  252 (334)
                      ..+.+.|.++++||.|.-
T Consensus       178 ~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          178 IRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             EEETCCCCCEEEEECSSS
T ss_pred             HhhccCChhhhhhHhhhh
Confidence            234567889999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-36
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-33
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-30
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-24
d1zcba1	126	a.66.1.1 (A:76-201) Transducin (alpha subunit), in	1e-23
d1tada1	121	a.66.1.1 (A:57-177) Transducin (alpha subunit), in	6e-23
d1zcaa1	122	a.66.1.1 (A:83-204) Transducin (alpha subunit), in	2e-22
d1azta1	114	a.66.1.1 (A:88-201) Transducin (alpha subunit), in	2e-22
d1cipa1	121	a.66.1.1 (A:61-181) Transducin (alpha subunit), in	3e-22
d2bcjq1	117	a.66.1.1 (Q:67-183) Transducin (alpha subunit), in	3e-21

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  128 bits (323), Expect = 2e-36
 Identities = 78/189 (41%), Positives = 109/189 (57%), Gaps = 15/189 (7%)

Query: 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216
             T GI E    +  + F   DVGGQR +RRKW QCF+ VT+I+F+V+SS Y+  + ED 
Sbjct: 32  VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91

Query: 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE----- 271
           +TNRL E+ N+F +I NN   R +S ILFLNK DLLAEK+   K+ I ++FPEF      
Sbjct: 92  QTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTP 151

Query: 272 -------GDPQDMQAVQTFLLNYFKAVKR---DEKKPLFHHFTTAVDTENIKIVFNAVKN 321
                  G+   +   + F+ + F  +     D +   + HFT AVDTENI+ VFN  ++
Sbjct: 152 EDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD 211

Query: 322 TILHRNLRD 330
            I   +LR 
Sbjct: 212 IIQRMHLRQ 220

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  120 bits (300), Expect = 3e-33
 Identities = 110/179 (61%), Positives = 143/179 (79%), Gaps = 3/179 (1%)

Query: 152 ILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQT 211
           I+H +  TKGI E+   I N+PF  VDVGGQRS+R++WF+CFDSVTSILFLVSSSE+DQ 
Sbjct: 24  IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQV 83

Query: 212 LVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFE 271
           L+EDR+TNRL ES NIF+TI+NN +F NVS ILFLNKTDLL EK++     I ++F EFE
Sbjct: 84  LMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVS--IKDYFLEFE 141

Query: 272 GDPQDMQAVQTFLLNYFKAVKRDE-KKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 329
           GDP  ++ VQ FL+  F+  +RD+ ++PL+HHFTTA++TENI++VF  VK+TILH NL+
Sbjct: 142 GDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 200

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  113 bits (282), Expect = 1e-30
 Identities = 88/173 (50%), Positives = 116/173 (67%), Gaps = 2/173 (1%)

Query: 157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR 216
             T GI E+   + ++ F  VDVGGQRS+RRKW  CF++VTSI+FLV+ SEYDQ LVE  
Sbjct: 30  VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 89

Query: 217 RTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQD 276
             NR+ ES+ +F TII    F+N S ILFLNK DLL EK+  S   + ++FPE++G  +D
Sbjct: 90  NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSH--LVDYFPEYDGPQRD 147

Query: 277 MQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNLR 329
            QA + F+L  F  +  D  K ++ HFT A DTENI+ VF AVK+TIL  NL+
Sbjct: 148 AQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 200

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.0 bits (240), Expect = 1e-24
 Identities = 70/169 (41%), Positives = 99/169 (58%), Gaps = 2/169 (1%)

Query: 159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT 218
             GI E      ++ F   DVGGQRS+R+KW  CF+ VT+I+F V+ S+YD  L ED   
Sbjct: 29  GTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEM 88

Query: 219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQ 278
           NR+HES  +FD+I NN  F + S ILFLNK DL  EK++ S   +   +PE+ G     +
Sbjct: 89  NRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSP--LTICYPEYAGSNTYEE 146

Query: 279 AVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN 327
           A       +    KR + K ++ HFT A DT+N++ VF+AV + I+  N
Sbjct: 147 AAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 195

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.9 bits (228), Expect = 1e-23
 Identities = 46/120 (38%), Positives = 73/120 (60%), Gaps = 19/120 (15%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC------IDSRLFSTYVDE 97
           GM+VL+DAR       K  IPW ++ N +H +K+  FD          +++R+F  Y+  
Sbjct: 20  GMRVLVDAR------EKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLPA 73

Query: 98  LKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           +++LW+D  I+ A++RR E+QLG+S++YF DN D++          DYIPS +DIL AR+
Sbjct: 74  IRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGVP-------DYIPSQQDILLARR 126

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 90.0 bits (223), Expect = 6e-23
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
            +  ++ A + L       I + +      A K+    +    +  +     D ++ LW 
Sbjct: 20  SILAIVRAMTTL------NIQYGDSARQDDARKLMHMADTI-EEGTMPKEMSDIIQRLWK 72

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT 159
           D  I+  F+R SEYQL DS  Y+  + +R+           Y+P+ +D+L +R  T
Sbjct: 73  DSGIQACFDRASEYQLNDSAGYYLSDLERLVTP-------GYVPTEQDVLRSRVKT 121

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.8 bits (220), Expect = 2e-22
 Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 15/116 (12%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKSL 101
           G +VL+DAR KL      GIPWQ+  N  H   +  F+N     ++   F  YV  L +L
Sbjct: 20  GSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSAL 73

Query: 102 WDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK 157
           W D  IR+AF RRSE+QLG+S++YF DN DRI +        +Y PS +DIL ARK
Sbjct: 74  WRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQL-------NYFPSKQDILLARK 122

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]} Length = 114

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.4 bits (219), Expect = 2e-22
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 13/113 (11%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
            ++ ++ A S L       +   N  N    + I    N    D      + +  K+LW+
Sbjct: 15  AIETIVAAMSNL----VPPVELANPENQFRVDYILSVMNVP--DFDFPPEFYEHAKALWE 68

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHAR 156
           D  +R  +ER +EYQL D  QYF D  D I +        DY+PS++D+L  R
Sbjct: 69  DEGVRACYERSNEYQLIDCAQYFLDKIDVIKQD-------DYVPSDQDLLRCR 114

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 121

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.1 bits (218), Expect = 3e-22
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 14/116 (12%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
            +  +I A  +L       I + +   A  A ++F        +  + +     +K LW 
Sbjct: 20  SIIAIIRAMGRL------KIDFGDAARADDARQLFVLAGAA-EEGFMTAELAGVIKRLWK 72

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT 159
           D  ++  F R  EYQL DS  Y+ ++ DRI++        +YIP+ +D+L  R  T
Sbjct: 73  DSGVQACFNRSREYQLNDSAAYYLNDLDRIAQP-------NYIPTQQDVLRTRVKT 121

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.0 bits (210), Expect = 3e-21
 Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 15/113 (13%)

Query: 44  GMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWD 103
            M+ +I A   L       IP++ + N  HA+ + + D      S   + YVD +KSLW+
Sbjct: 20  AMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEK--VSAFENPYVDAIKSLWN 71

Query: 104 DVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHAR 156
           D  I++ ++RR EYQL DS +Y+ ++ DR++          Y+P+ +D+L  R
Sbjct: 72  DPGIQECYDRRREYQLSDSTKYYLNDLDRVADP-------SYLPTQQDVLRVR 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	100.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	100.0
d1tada1	121	Transducin (alpha subunit), insertion domain {Cow	99.98
d1cipa1	121	Transducin (alpha subunit), insertion domain {Rat	99.97
d2bcjq1	117	Transducin (alpha subunit), insertion domain {Mous	99.97
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.97
d1zcaa1	122	Transducin (alpha subunit), insertion domain {Mous	99.97
d1zcba1	126	Transducin (alpha subunit), insertion domain {Mous	99.97
d1azta1	114	Transducin (alpha subunit), insertion domain {Cow	99.96
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.95
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.81
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.8
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.79
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.78
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.77
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.77
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.75
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.75
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.74
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.74
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.73
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.71
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.7
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.7
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.7
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.69
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.65
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.65
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.64
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.63
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.6
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.59
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.58
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.54
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.45
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.44
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.35
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.05
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.0
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.86
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.85
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.78
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.74
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.74
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.67
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.6
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.52
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.52
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.5
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.46
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.37
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.35
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.33
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.3
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.26
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.18
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.91
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.8
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.65
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.37
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.34
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.76
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.27
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.07
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.01
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.97
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	94.96
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.31
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	87.55
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	83.2

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-36  Score=272.13  Aligned_cols=173  Identities=44%  Similarity=0.735  Sum_probs=159.9

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|+.+..+.++++++++||+|||+++|++|.+||+++++++||+|++++++.+.++...+++.|++.+|+++++++++
T Consensus        33 pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~  112 (221)
T d1azta2          33 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWL  112 (221)
T ss_dssp             CCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGG
T ss_pred             CCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCC------------CCccHHHHHHHHHHHHHhhccC---CCCCeEEE
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG------------DPQDMQAVQTFLLNYFKAVKRD---EKKPLFHH  302 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g------------~~~~~~~~~~fi~~~F~~l~~~---~~~~i~~~  302 (334)
                      .++|++||+||+||+++|+.....++.++||+|.|            .+.+...|.+||+++|.++.+.   +++.+|+|
T Consensus       113 ~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h  192 (221)
T d1azta2         113 RTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPH  192 (221)
T ss_dssp             SSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEE
T ss_pred             CCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeee
Confidence            99999999999999999984344689999999974            3456778999999999987653   23779999


Q ss_pred             EEeeecCchHHHHHHHHHHHHHHHhhhh
Q psy3651         303 FTTAVDTENIKIVFNAVKNTILHRNLRD  330 (334)
Q Consensus       303 ~tsA~d~~nI~~vf~~v~~~I~~~~l~~  330 (334)
                      +|||+|++||+.||+.|.++|+++||++
T Consensus       193 ~T~A~Dt~ni~~vf~~v~d~I~~~~l~~  220 (221)
T d1azta2         193 FTCAVDTENIRRVFNDCRDIIQRMHLRQ  220 (221)
T ss_dssp             ECCTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             ecceeccHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999986

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-34  Score=251.50  Aligned_cols=171  Identities=64%  Similarity=1.057  Sum_probs=155.0

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....+.+++.++++||+|||+.+|++|.++|++++++++++|+++.+..+.++...+++.+++.+|.++++++.
T Consensus        29 ~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  108 (200)
T d1zcba2          29 DPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV  108 (200)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred             CCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecCchHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~~nI~~v  315 (334)
                      ..++|++|++||+|++++++  ...++.++||+|.|.+++.+.|.+|+.++|..+..... +.+|+|+|||+|++||+.+
T Consensus       109 ~~~~piilv~NK~Dl~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~v  186 (200)
T d1zcba2         109 FSNVSIILFLNKTDLLEEKV--QVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV  186 (200)
T ss_dssp             GTTSEEEEEEECHHHHHHHT--TTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred             hcCceEEEEeccchhhhhhc--cccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHH
Confidence            99999999999999999999  88899999999999999999999999999998765543 7899999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy3651         316 FNAVKNTILHRNLR  329 (334)
Q Consensus       316 f~~v~~~I~~~~l~  329 (334)
                      |+.|.++|+++|||
T Consensus       187 f~~v~d~i~~~~l~  200 (200)
T d1zcba2         187 FRDVKDTILHDNLK  200 (200)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999986

>d1tada1 a.66.1.1 (A:57-177) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=8.8e-34  Score=230.84  Aligned_cols=121  Identities=25%  Similarity=0.465  Sum_probs=114.6

Q ss_pred             CCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHHHHHHHHHhc
Q psy3651          23 YFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLW  102 (334)
Q Consensus        23 ~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~lW  102 (334)
                      |+++|+..||+  +||.||+++|+.|++||+.+      +|++++|.++..++.++...... .+.+++++++++|+.||
T Consensus         1 Fs~eE~~~~~~--~I~~Nii~~m~~li~a~~~l------~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~e~~~~i~~LW   71 (121)
T d1tada1           1 YSLEECLEFIA--IIYGNTLQSILAIVRAMTTL------NIQYGDSARQDDARKLMHMADTI-EEGTMPKEMSDIIQRLW   71 (121)
T ss_dssp             CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT------TCCCSSTTHHHHHHHHHHHHHHS-CTTCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHhHH--HHHHHHHHHHHHHHHHHHHc------CCCCCCchHHHHHHHHHHhhccc-cCCCCCHHHHHHHHHHh
Confidence            79999999999  99999999999999999999      99999999999999998765443 35689999999999999


Q ss_pred             cCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeee
Q psy3651         103 DDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT  159 (334)
Q Consensus       103 ~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T  159 (334)
                      +|+|||+||.|++||+|+||++|||++++||++       |+|+||++|+|++|.+|
T Consensus        72 ~D~~iq~~~~r~~ef~L~Dsa~YF~~~l~RI~~-------~~Y~PT~qDiLr~R~~T  121 (121)
T d1tada1          72 KDSGIQACFDRASEYQLNDSAGYYLSDLERLVT-------PGYVPTEQDVLRSRVKT  121 (121)
T ss_dssp             HCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHHCCCCC
T ss_pred             CCHHHHHHHHhhhccccCcchHHHHHHHHHHcC-------CCCCCCHHHHhhhcCCC
Confidence            999999999999999999999999999999999       99999999999999987

>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=4.7e-33  Score=226.61  Aligned_cols=121  Identities=27%  Similarity=0.515  Sum_probs=112.8

Q ss_pred             CCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHHHHHHHHHhc
Q psy3651          23 YFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLW  102 (334)
Q Consensus        23 ~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~lW  102 (334)
                      |+++|+..||+  +||.||+++|++|++||+.+      +|+++++.++..+..+....... .+..++++++++|+.||
T Consensus         1 Fs~eE~~~~~~--~I~~Ni~~~~~~ll~a~~~l------~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~i~~LW   71 (121)
T d1cipa1           1 YSEEECKQYKA--VVYSNTIQSIIAIIRAMGRL------KIDFGDAARADDARQLFVLAGAA-EEGFMTAELAGVIKRLW   71 (121)
T ss_dssp             CCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHH------TCCCSSTTHHHHHHHHHHHHHHH-TTTCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHhHH--HHHHHHHHHHHHHHHHHHHh------CCCCCChhHHHHHHHHHHhhccc-cCCCCCHHHHHHHHHHh
Confidence            89999999999  99999999999999999999      99999999999888776543332 35689999999999999


Q ss_pred             cCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceeeee
Q psy3651         103 DDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARKAT  159 (334)
Q Consensus       103 ~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T  159 (334)
                      +|+|||+||+|++||+|+||++|||++++||++       ++|+||++|||++|.+|
T Consensus        72 ~D~~Iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~-------~dY~PT~qDILr~R~~T  121 (121)
T d1cipa1          72 KDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQ-------PNYIPTQQDVLRTRVKT  121 (121)
T ss_dssp             HCHHHHHHHTTGGGSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHTCCCCC
T ss_pred             CCHHHHHHHHhhhcccCCCChHHHHHHHHHHcC-------CCCCCCHHHHhHhcCCC
Confidence            999999999999999999999999999999999       99999999999999987

>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-32  Score=220.78  Aligned_cols=117  Identities=32%  Similarity=0.599  Sum_probs=111.0

Q ss_pred             CCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHHHHHHHHHhc
Q psy3651          23 YFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLW  102 (334)
Q Consensus        23 ~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~lW  102 (334)
                      |+++|+..||+  +||.||+++|++||+||+.+      +|++++|+++..+..++......  ..+++++++++|+.||
T Consensus         1 fs~eE~~~~~~--~I~~Nii~~m~~ll~a~~~l------~i~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~i~~LW   70 (117)
T d2bcjq1           1 YSDEDKRGFTK--LVYQNIFTAMQAMIRAMDTL------KIPYKYEHNKAHAQLVREVDVEK--VSAFENPYVDAIKSLW   70 (117)
T ss_dssp             CCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHH------TCCCSSTTHHHHHHHHHTSCSTT--CCCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHhHH--HHHHHHHHHHHHHHHHHHHc------CCCCCChhhHHHHHHHHhccccc--ccccCHHHHHHHHHHH
Confidence            79999999999  99999999999999999999      99999999999999998765443  4579999999999999


Q ss_pred             cCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCccccccee
Q psy3651         103 DDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHAR  156 (334)
Q Consensus       103 ~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~  156 (334)
                      +||+||+||+|++||+|+||+.|||++++||++       |+|+||.+||||+|
T Consensus        71 ~D~~iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~-------~dY~PT~qDILr~R  117 (117)
T d2bcjq1          71 NDPGIQECYDRRREYQLSDSTKYYLNDLDRVAD-------PSYLPTQQDVLRVR  117 (117)
T ss_dssp             HSHHHHHHHHTTTSSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHHCC
T ss_pred             cCHHHHHHHHHhhhhccCcccHHHHHHHHHHcC-------CCCCCCHHHhhhcC
Confidence            999999999999999999999999999999999       99999999999986

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.5e-31  Score=226.89  Aligned_cols=171  Identities=51%  Similarity=0.847  Sum_probs=163.7

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|++...+..+...+++||++||+.++..|.+||++++++++|+|+++++..+..+.+.+++.+++.+|..+++.+.
T Consensus        30 ~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~  109 (200)
T d2bcjq2          30 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW  109 (200)
T ss_dssp             CCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG
T ss_pred             CceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..++|+++++||+|+++.++  ...++..++|++.+.+.+.+.+.+|+..+|.++.....+.+++|+|||+||+||+++|
T Consensus       110 ~~~~~~~~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF  187 (200)
T d2bcjq2         110 FQNSSVILFLNKKDLLEEKI--MYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVF  187 (200)
T ss_dssp             GSSSEEEEEEECHHHHHHHT--TTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHH
T ss_pred             ccCccEEEecchhhhhhhcc--cchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHH
Confidence            99999999999999999998  8888999999999999999999999999999998877789999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy3651         317 NAVKNTILHRNLR  329 (334)
Q Consensus       317 ~~v~~~I~~~~l~  329 (334)
                      +.|.++|+++||+
T Consensus       188 ~~i~~~I~~~nl~  200 (200)
T d2bcjq2         188 AAVKDTILQLNLK  200 (200)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999986

>d1zcaa1 a.66.1.1 (A:83-204) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.1e-32  Score=219.82  Aligned_cols=120  Identities=44%  Similarity=0.753  Sum_probs=110.8

Q ss_pred             CCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCc--CCCcCcHHHHHHHHH
Q psy3651          23 YFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC--IDSRLFSTYVDELKS  100 (334)
Q Consensus        23 ~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~  100 (334)
                      |+++|+..||+  +||.||+++|++|++||+.+      +|++++++++..++.++.+.....  .+..++++++++|+.
T Consensus         1 Fs~~E~~~~r~--~I~~Nii~~~~~Li~am~~l------~i~~~~~~n~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~   72 (122)
T d1zcaa1           1 FDQKALLEFRD--TIFDNILKGSRVLVDARDKL------GIPWQHSENEKHGMFLMAFENKAGLPVEPATFQLYVPALSA   72 (122)
T ss_dssp             CCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT------CCCCSSGGGHHHHHHHHTCCCTTCCCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHhHH--HHHHHHHHHHHHHHHHHHHc------CCCCCChhhHHHHHHHHhcccccCCCCCccchHHHHHHHHH
Confidence            79999999999  99999999999999999999      999999999999999987654331  234567889999999


Q ss_pred             hccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceee
Q psy3651         101 LWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK  157 (334)
Q Consensus       101 lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~  157 (334)
                      ||+||+||+||.|+++|+|+||+.|||++++||+.       ++|+||++|||++|.
T Consensus        73 LW~D~~Iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~-------~dYiPT~qDILr~R~  122 (122)
T d1zcaa1          73 LWRDSGIREAFSRRSEFQLGESVKYFLDNLDRIGQ-------LNYFPSKQDILLARK  122 (122)
T ss_dssp             HHHCHHHHHHHHTGGGSCCCTHHHHHHHTHHHHSS-------TTCCCCHHHHHHCCC
T ss_pred             HHCCHHHHHHHHhccccccccchHHHHHHHHHHcC-------CCCCCCHHHHHHhcC
Confidence            99999999999999999999999999999999999       999999999999984

>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.6e-31  Score=218.90  Aligned_cols=120  Identities=40%  Similarity=0.790  Sum_probs=111.1

Q ss_pred             CCcccchhhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCc------CCCcCcHHHHH
Q psy3651          23 YFSVECCCERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTC------IDSRLFSTYVD   96 (334)
Q Consensus        23 ~~~~e~~~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~   96 (334)
                      |+++|+..||+  +||.||+++|+.|++||+.+      +|++++|.++..++.++.+.....      .+..++++++.
T Consensus         1 Fs~~Er~~~r~--~I~~Nii~~m~~ll~a~~~l------~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~e~~~   72 (126)
T d1zcba1           1 FDQRAREEFRP--TIYSNVIKGMRVLVDAREKL------HIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQYLP   72 (126)
T ss_dssp             CCHHHHHTTHH--HHHHHHHHHHHHHHHHHHHT------TCCCSSGGGHHHHHHHHTSCSSSHHHHTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHhHH--HHHHHHHHHHHHHHHHHHHc------CCCCCCchhHHHHHHHHhcccccccccccccccccCHHHHH
Confidence            79999999999  99999999999999999999      999999999999999987644321      24568899999


Q ss_pred             HHHHhccCHHHHHHHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCcccccceee
Q psy3651          97 ELKSLWDDVAIRQAFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHARK  157 (334)
Q Consensus        97 ~i~~lW~d~~iq~~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~~  157 (334)
                      +|+.||+|||||+||.|+++|+|+||++|||++++||++       |+|+||.+|||++|.
T Consensus        73 ~i~~LW~D~~iq~~~~r~~ef~L~Dsa~YFl~~l~RI~~-------~dYiPT~qDILr~Rk  126 (126)
T d1zcba1          73 AIRALWEDSGIQNAYDRRREFQLGESVKYFLDNLDKLGV-------PDYIPSQQDILLARR  126 (126)
T ss_dssp             HHHHHHHCHHHHHHHHTGGGSCCCTTHHHHHTTHHHHTS-------TTCCCCHHHHHHCCC
T ss_pred             HHHHHhCCHHHHHHHHHhhhhcCCcchHHHHHHHHHHcC-------CCCCCCHHHHHHhcC
Confidence            999999999999999999999999999999999999999       999999999999984

>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Transducin (alpha subunit), insertion domain
superfamily: Transducin (alpha subunit), insertion domain
family: Transducin (alpha subunit), insertion domain
domain: Transducin (alpha subunit), insertion domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=4.4e-30  Score=205.83  Aligned_cols=112  Identities=29%  Similarity=0.501  Sum_probs=100.8

Q ss_pred             hhccccccccCHHHHHHHHHHHHHHhhhcCCCCCCcCCCcchHHHHHHhcccCCCcCCCcCcHHHHHHHHHhccCHHHHH
Q psy3651          30 CERHSGNNSFTSFPGMKVLIDARSKLLHDNKFGIPWQNDMNAIHAEKIFQFDNNTCIDSRLFSTYVDELKSLWDDVAIRQ  109 (334)
Q Consensus        30 ~~r~~~~i~~Ni~~~~~~l~~a~~~l~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~lW~d~~iq~  109 (334)
                      .+.+  .||.||++||++|++||+.|    +.+|++++|+++.+++.++......  +..++++++++|+.||+|+|||+
T Consensus         3 ~~i~--~I~~Nii~sm~~li~Am~~L----~~~i~~~~~~n~~~~~~i~~~~~~~--~~~~~~e~~~~i~~LW~D~giq~   74 (114)
T d1azta1           3 TKVQ--DIKNNLKEAIETIVAAMSNL----VPPVELANPENQFRVDYILSVMNVP--DFDFPPEFYEHAKALWEDEGVRA   74 (114)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHTTS----SSCCCCSSGGGHHHHHHHHHTTTCS--SCCCCHHHHHHHHHHHHSHHHHH
T ss_pred             chhh--HHHHHHHHHHHHHHHHHHHc----CCCCCcCCHHHHHHHHHHHhccccc--CcccCHHHHHHHHHHhCCHHHHH
Confidence            4456  89999999999999999999    2235578999999999998865443  56799999999999999999999


Q ss_pred             HHHhccccccCcccchhhhhHHHHHhhhCCCCCCCCCCCccccccee
Q psy3651         110 AFERRSEYQLGDSIQYFFDNWDRISRRVNSPLFQDYIPSNKDILHAR  156 (334)
Q Consensus       110 ~~~~~~~~~l~d~~~yfl~~l~Ri~~~~~~~f~~~y~PT~~Dil~~~  156 (334)
                      ||.|++||+|+||++|||++++||++       ++|+||.+|+||+|
T Consensus        75 ~~~r~~e~~L~Dsa~Yfl~~i~RI~~-------~dY~PT~qDiLr~R  114 (114)
T d1azta1          75 CYERSNEYQLIDCAQYFLDKIDVIKQ-------DDYVPSDQDLLRCR  114 (114)
T ss_dssp             HHHTGGGTTCCTTHHHHHTTHHHHHS-------TTCCCCHHHHHHCC
T ss_pred             HHHhccccCCCCchHHHHHHHHHHcC-------CCCCCCHhHhhccC
Confidence            99999999999999999999999999       99999999999986

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.2e-28  Score=210.73  Aligned_cols=167  Identities=41%  Similarity=0.779  Sum_probs=153.3

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      ||+|+.+..+..++.++++||+|||+.++++|.+||++++++++|+|+++.+....+....+++.+++..|..+++++..
T Consensus        28 ~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~  107 (195)
T d1svsa1          28 AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF  107 (195)
T ss_dssp             CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGG
T ss_pred             CCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhccccc
Confidence            46788888889999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             CCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCC-CCeEEEEEeeecCchHHHHH
Q psy3651         238 RNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEK-KPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       238 ~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~-~~i~~~~tsA~d~~nI~~vf  316 (334)
                      .++|+++++||+|++.+++  ...++..+||++.|... .+.+..++..+|.++..... +.+|+|+|||+|++||+++|
T Consensus       108 ~~~~~~lv~Nk~d~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F  184 (195)
T d1svsa1         108 TDTSIILFLNKKDLFEEKI--KKSPLTICYPEYAGSNT-YEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF  184 (195)
T ss_dssp             TTSEEEEEEECHHHHHHHT--TTSCGGGTCTTCCSCSS-HHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred             CCCCEEEEeccchhhhhhc--cchHHHHHhhhhcCccc-HHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHH
Confidence            9999999999999999999  88999999999988754 45566799999998865544 78999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy3651         317 NAVKNTILHRN  327 (334)
Q Consensus       317 ~~v~~~I~~~~  327 (334)
                      +.|.++|+++|
T Consensus       185 ~~v~~~il~~n  195 (195)
T d1svsa1         185 DAVTDVIIKNN  195 (195)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhcC
Confidence            99999999875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.82  E-value=3.9e-20  Score=155.78  Aligned_cols=131  Identities=18%  Similarity=0.339  Sum_probs=108.0

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||+|+....++.+++.+.+||+|||+.++..|.++|.+++++++|+|+++.          .++.++..++..+++.+.
T Consensus        32 ~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~  101 (164)
T d1zd9a1          32 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQ----------EKIEASKNELHNLLDKPQ  101 (164)
T ss_dssp             CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred             cccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccccc----------cccchhhhhhhhhhhhhc
Confidence            3577888888888999999999999999999999999999999999999998          789999999999999888


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      .+++|++|++||+|+....   ....+.+.                      .+......+.+.+++|||++|.||.++|
T Consensus       102 ~~~~pi~lv~nK~Dl~~~~---~~~~i~~~----------------------~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1         102 LQGIPVLVLGNKRDLPGAL---DEKELIEK----------------------MNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             GTTCCEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             ccCCcEEEEEeccccchhh---hHHHHHHH----------------------HHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            8899999999999986531   11112211                      2222233467889999999999999999


Q ss_pred             HHHHHH
Q psy3651         317 NAVKNT  322 (334)
Q Consensus       317 ~~v~~~  322 (334)
                      +|+.+.
T Consensus       157 ~~l~~~  162 (164)
T d1zd9a1         157 QWLIQH  162 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.81  E-value=7.8e-20  Score=156.33  Aligned_cols=138  Identities=20%  Similarity=0.330  Sum_probs=110.9

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..||.|........+++++.+||++|++.++..|..++.++++++||+|+++.          ..+.++..++..++...
T Consensus        45 ~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~----------~s~~~~~~~l~~~~~~~  114 (182)
T d1moza_          45 TKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDK----------DRMSTASKELHLMLQEE  114 (182)
T ss_dssp             ECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCT----------TTHHHHHHHHHHHTTSS
T ss_pred             cccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeEEEEeeeccc----------ccchhHHHHHHHHHHhh
Confidence            35788888888888999999999999999999999999999999999999998          88899999999988888


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|++|++||+|+... +  ....+.+.                      ..+.....+.+.+++|||++|+||.++
T Consensus       115 ~~~~~piliv~NK~Dl~~~-~--~~~~i~~~----------------------~~~~~~~~~~~~~~e~SA~~g~gv~e~  169 (182)
T d1moza_         115 ELQDAALLVFANKQDQPGA-L--SASEVSKE----------------------LNLVELKDRSWSIVASSAIKGEGITEG  169 (182)
T ss_dssp             TTSSCEEEEEEECTTSTTC-C--CHHHHHHH----------------------TTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             ccCCcceEEEEEeeccccc-c--CHHHHHHH----------------------HHHHHHhhCCCEEEEEECCCCCCHHHH
Confidence            7888999999999998643 2  22222221                      222223346788999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy3651         316 FNAVKNTILHRNL  328 (334)
Q Consensus       316 f~~v~~~I~~~~l  328 (334)
                      |+|+.+.|.++.|
T Consensus       170 ~~~l~~~i~~~~l  182 (182)
T d1moza_         170 LDWLIDVIKEEQL  182 (182)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999987654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-19  Score=153.02  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=111.2

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|+..   +.|.+.|.||..+.....        ..+..+.+++.+||++|++.++..|..|+++++++|+|+|+++.  
T Consensus        20 ~~~~~---~~f~~~~~~t~~~~~~~~--------~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~--   86 (177)
T d1kmqa_          20 IVNSK---DQFPEVYVPTVFENYVAD--------IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSP--   86 (177)
T ss_dssp             HHHHH---SCCCSSCCCCSEEEEEEE--------EEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCCCcCCceeeecccc--------ccccccceeeeccccCccchhcccchhhcccchhhhhhcccchh--
Confidence            44444   567778888765432111        11122446789999999999999999999999999999999997  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              .++++...+|..++... ..++|++|++||+|+...+.  ....+..    .....-+.+.+..+.++.   
T Consensus        87 --------~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~--~~~~~~~----~~~~~v~~~e~~~~a~~~---  148 (177)
T d1kmqa_          87 --------DSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEH--TRRELAK----MKQEPVKPEEGRDMANRI---  148 (177)
T ss_dssp             --------HHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHH--HHHHHHH----TTCCCCCHHHHHHHHHHT---
T ss_pred             --------HHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhh--HHHHHHH----hhcccccHHHHHHHHHHc---
Confidence                    77888888888777654 36799999999999976432  1111111    122223344444332221   


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                            ..+.+++|||+++.||+++|+.+.+.+++
T Consensus       149 ------~~~~~~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         149 ------GAFGYMECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             ------TCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             ------CCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence                  33678999999999999999999988763

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.80  E-value=1.9e-19  Score=151.25  Aligned_cols=134  Identities=21%  Similarity=0.305  Sum_probs=111.6

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||.|+....+..+++.+.+||++|++.++..|..++.+++++++|+|+++.          ..+.++..+|...+....
T Consensus        31 ~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~----------~~~~~~~~~~~~~~~~~~  100 (165)
T d1ksha_          31 SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADR----------QRMQDCQRELQSLLVEER  100 (165)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred             cceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccc----------hhHHHHHHhhhhhhhhcc
Confidence            5788888888999999999999999999999999999999999999999998          889999999999888777


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+...+   ........                      ..+.....+.+.+++|||++|+||.++|
T Consensus       101 ~~~~p~iiv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_         101 LAGATLLIFANKQDLPGAL---SCNAIQEA----------------------LELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             GTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cCCCceEEEEecccccccc---CHHHHHHH----------------------HHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            7889999999999986532   11111111                      2222233467889999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      +|+.+.|.+
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998864

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.79  E-value=2.3e-19  Score=152.23  Aligned_cols=133  Identities=23%  Similarity=0.374  Sum_probs=111.6

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      ..+|.|+.........+.+.+||++|+...+..|.+++.+++++|||+|+++.          .++.++..+|...++++
T Consensus        40 ~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~----------~~~~~~~~~l~~~~~~~  109 (173)
T d1e0sa_          40 TIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADR----------DRIDEARQELHRIINDR  109 (173)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCG----------GGHHHHHHHHHHHHTSG
T ss_pred             ccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccc----------hhHHHHHHHHHHHhhhc
Confidence            46889999888888899999999999999999999999999999999999998          88999999999999988


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|++|++||+|+....   ....+...                      .++.....+.+.+++|||++|+||.++
T Consensus       110 ~~~~~piiiv~NK~Dl~~~~---~~~~i~~~----------------------~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_         110 EMRDAIILIFANKQDLPDAM---KPHEIQEK----------------------LGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             GGTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             ccccceeeeeeecccccccc---cHHHHHHH----------------------HHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            88899999999999986542   12122221                      233334456788999999999999999


Q ss_pred             HHHHHHHH
Q psy3651         316 FNAVKNTI  323 (334)
Q Consensus       316 f~~v~~~I  323 (334)
                      |+||.+.+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=149.85  Aligned_cols=158  Identities=15%  Similarity=0.154  Sum_probs=111.7

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCcc
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      +.|++.   +.|.++|.||..|....... .       .-..+++.+||++||+.++..|..|+++++++|+|+|+++. 
T Consensus        26 i~r~~~---~~f~~~~~~Ti~~~~~~~~~-~-------~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~-   93 (185)
T d2atxa1          26 LMSYAN---DAFPEEYVPTVFDHYAVSVT-V-------GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNP-   93 (185)
T ss_dssp             HHHHHH---SSCCCSCCCSSCCCEEEEEE-S-------SSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCH-
T ss_pred             HHHHhh---CCCCCcCCCceeeeeeEEEe-e-------CCceEEeecccccccchhhhhhhhcccccceeeeccccchH-
Confidence            345554   67778899987654221111 1       11236788999999999999999999999999999999998 


Q ss_pred             chhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHH
Q psy3651         210 QTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFK  289 (334)
Q Consensus       210 ~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~  289 (334)
                               .++++...++...++.. ..++|++|++||+||.....  ....+.+    -....-+.+++.++.++.  
T Consensus        94 ---------~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~--~~~~~~~----~~~r~v~~~~~~~~a~~~--  155 (185)
T d2atxa1          94 ---------ASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPK--TLARLND----MKEKPICVEQGQKLAKEI--  155 (185)
T ss_dssp             ---------HHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHH--HHHHHTT----TTCCCCCHHHHHHHHHHH--
T ss_pred             ---------HHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchh--hhhhhhh----cccccccHHHHHHHHHHc--
Confidence                     77888888888887754 57899999999999876422  1111111    111222445555443332  


Q ss_pred             hhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         290 AVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       290 ~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                             ..+.+++|||+++.||+++|+.+.+.|+
T Consensus       156 -------~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         156 -------GACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             -------TCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -------CCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence                   2356889999999999999999988875

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.78  E-value=2.9e-19  Score=151.48  Aligned_cols=132  Identities=20%  Similarity=0.348  Sum_probs=109.3

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .+|.|++...+..+++.+.+||++|++.++..|..++.+++++|+|+|+++.          .++.++..++..+.....
T Consensus        45 ~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~----------~s~~~~~~~~~~~~~~~~  114 (176)
T d1fzqa_          45 TPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADR----------KRFEETGQELTELLEEEK  114 (176)
T ss_dssp             EEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCG----------GGHHHHHHHHHHHTTCGG
T ss_pred             eeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEeeccccc----------cchhhhhhhhhhhhhhhc
Confidence            5788988888888999999999999999999999999999999999999998          889999999998887777


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+|+..+.   ....+.+.                      ..+.....+.+.+++|||++|+||+++|
T Consensus       115 ~~~~pillv~nK~Dl~~~~---~~~~~~~~----------------------~~~~~~~~~~~~~~~~SA~tg~gv~e~~  169 (176)
T d1fzqa_         115 LSCVPVLIFANKQDLLTAA---PASEIAEG----------------------LNLHTIRDRVWQIQSCSALTGEGVQDGM  169 (176)
T ss_dssp             GTTCCEEEEEECTTSTTCC---CHHHHHHH----------------------TTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             cCCCeEEEEEEeccccccc---cHHHHHHH----------------------HHHHHHHhcCCEEEEEeCCCCCCHHHHH
Confidence            7789999999999996542   22222221                      2222333467889999999999999999


Q ss_pred             HHHHHHH
Q psy3651         317 NAVKNTI  323 (334)
Q Consensus       317 ~~v~~~I  323 (334)
                      +|+.+.|
T Consensus       170 ~~l~~~i  176 (176)
T d1fzqa_         170 NWVCKNV  176 (176)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9998753

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.3e-19  Score=148.68  Aligned_cols=147  Identities=14%  Similarity=0.118  Sum_probs=110.2

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCcc
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      +.|+..   +.|.+.|.||..+......        ......+.+.+||++|+..++..|..|+++++++|+|+|+++. 
T Consensus        20 i~r~~~---~~f~~~~~~t~~~~~~~~~--------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~-   87 (167)
T d1c1ya_          20 TVQFVQ---GIFVEKYDPTIEDSYRKQV--------EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ-   87 (167)
T ss_dssp             HHHHHH---CCCCCSCCCCSEEEEEEEE--------ESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCH-
T ss_pred             HHHHHc---CCCCCccCCccccccceeE--------EeeeeEEEeccccccCcccccccccccccccceeEEeeeccch-
Confidence            344444   6777888888754432111        1112347789999999999999999999999999999999998 


Q ss_pred             chhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHH
Q psy3651         210 QTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFK  289 (334)
Q Consensus       210 ~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~  289 (334)
                               .++++...|+..+......+++|++|++||+|+..++.  .                ..+.+..+.++   
T Consensus        88 ---------~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~--~----------------~~~~~~~~~~~---  137 (167)
T d1c1ya_          88 ---------STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--V----------------GKEQGQNLARQ---  137 (167)
T ss_dssp             ---------HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC--S----------------CHHHHHHHHHH---
T ss_pred             ---------hhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccc--c----------------chhHHHHHHHH---
Confidence                     78888888998888766667899999999999976532  1                12222222221   


Q ss_pred             hhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         290 AVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       290 ~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                            ...+.+++|||++|.||.++|.++.+.|.
T Consensus       138 ------~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         138 ------WCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             ------TTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             ------hCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence                  13477899999999999999999998774

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.7e-18  Score=146.59  Aligned_cols=148  Identities=17%  Similarity=0.142  Sum_probs=111.7

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCcc
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      +.|+..   ++|.+.|.||..|...   +++     .+....+.+++||++|++..+..+..|+++++++|+|+|+++. 
T Consensus        21 l~~~~~---~~~~~~~~~t~~~~~~---~~~-----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~-   88 (169)
T d1x1ra1          21 TIQFFQ---KIFVPDYDPTIEDSYL---KHT-----EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDK-   88 (169)
T ss_dssp             HHHHHH---SSCCTTCCTTCCEEEE---EEE-----EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCH-
T ss_pred             HHHHHh---CCCCcccCcceeeccc---ccc-----ccccccccccccccccccccccchhhhhhhccEEEEecccccc-
Confidence            345554   5677888888765421   111     1222457889999999999999999999999999999999998 


Q ss_pred             chhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHH
Q psy3651         210 QTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFK  289 (334)
Q Consensus       210 ~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~  289 (334)
                               .++.....|+..+.+.....+.|++|++||+|+...+.                  -+.+.+.+|..+.  
T Consensus        89 ---------~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~------------------v~~e~~~~~~~~~--  139 (169)
T d1x1ra1          89 ---------ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK------------------VTRDQGKEMATKY--  139 (169)
T ss_dssp             ---------HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC------------------SCHHHHHHHHHHH--
T ss_pred             ---------hhhhccchhhHHHHhhccccCccEEEEecccchhhhce------------------eehhhHHHHHHHc--
Confidence                     78888888888887765557889999999999876531                  1233444444332  


Q ss_pred             hhccCCCCCeEEEEEeeecCc-hHHHHHHHHHHHHHHH
Q psy3651         290 AVKRDEKKPLFHHFTTAVDTE-NIKIVFNAVKNTILHR  326 (334)
Q Consensus       290 ~l~~~~~~~i~~~~tsA~d~~-nI~~vf~~v~~~I~~~  326 (334)
                              ++.+++|||+++. ||+++|.++.+.|+++
T Consensus       140 --------~~~~~e~Sak~~~~nV~~~F~~l~~~i~~~  169 (169)
T d1x1ra1         140 --------NIPYIETSAKDPPLNVDKTFHDLVRVIRQQ  169 (169)
T ss_dssp             --------TCCEEEEBCSSSCBSHHHHHHHHHHHHHHC
T ss_pred             --------CCEEEEEcCCCCCcCHHHHHHHHHHHHHhC
Confidence                    3568999999876 9999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=147.04  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=108.8

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      ++|.++|.||..|....   ++.+     .-..+.+.+||++|+..++..|..++++++++|+|+|+++.          
T Consensus        29 ~~f~~~~~~t~~~~~~~---~~~~-----~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------   90 (173)
T d2fn4a1          29 SYFVSDYDPTIEDSYTK---ICSV-----DGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDR----------   90 (173)
T ss_dssp             SSCCSSCCTTCCEEEEE---EEEE-----TTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCH----------
T ss_pred             CCCCcccccccccceee---Eecc-----CCeeeeeeccccccccccccccchhhccceeeeeecccccc----------
Confidence            67778899987665322   1111     11236788999999999999999999999999999999998          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++.....|+..+.......++|++|++||+|+..++.  .                ..+.+..+..          ...
T Consensus        91 ~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~--~----------------~~~~~~~~~~----------~~~  142 (173)
T d2fn4a1          91 QSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--V----------------PRSEASAFGA----------SHH  142 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC--S----------------CHHHHHHHHH----------HTT
T ss_pred             cccchhhhhhHHHHHHhccCCCceEEEEEeechhhccc--c----------------chhhhhHHHH----------hcC
Confidence            78888888888887766667899999999999866532  1                1122222222          134


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +.+++|||++|.||+++|+++.+.|.++
T Consensus       143 ~~~~e~Sak~g~gv~e~f~~l~~~i~k~  170 (173)
T d2fn4a1         143 VAYFEASAKLRLNVDEAFEQLVRAVRKY  170 (173)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            6789999999999999999999998765

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.77  E-value=1.2e-18  Score=147.53  Aligned_cols=147  Identities=18%  Similarity=0.173  Sum_probs=108.0

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCcc
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      +.|++.   ++|.++|.||..|....   ++     .+....+.+.+||++|+...+..|..++++++++|+|+|+++. 
T Consensus        21 i~~~~~---~~f~~~~~~T~~~~~~~---~~-----~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~-   88 (168)
T d1u8za_          21 TLQFMY---DEFVEDYEPTKADSYRK---KV-----VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM-   88 (168)
T ss_dssp             HHHHHH---SCCCSCCCTTCCEEEEE---EE-----EETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH-
T ss_pred             HHHHHh---CCCCcccCCcccccccc---cc-----ccccccccccccccccccchhhhhhhcccccceeEEEeeccch-
Confidence            344444   67888899987664221   11     1112346788999999999999999999999999999999998 


Q ss_pred             chhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHH
Q psy3651         210 QTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFK  289 (334)
Q Consensus       210 ~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~  289 (334)
                               .++.....|++++.......++|++|++||+|+..++.    .              +.+.+.++..+   
T Consensus        89 ---------~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----v--------------~~~~~~~~~~~---  138 (168)
T d1u8za_          89 ---------ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----V--------------SVEEAKNRADQ---  138 (168)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----S--------------CHHHHHHHHHH---
T ss_pred             ---------hhhhhHHHHHHHHHHhhCCCCCcEEEEecccccccccc----c--------------cHHHHHHHHHH---
Confidence                     78888888998988776667899999999999866431    1              12233333332   


Q ss_pred             hhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         290 AVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       290 ~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                             .++.+++|||++|.||+++|.++.+.|..
T Consensus       139 -------~~~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         139 -------WNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             -------HTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -------cCCeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence                   23678999999999999999999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-18  Score=146.18  Aligned_cols=118  Identities=16%  Similarity=0.153  Sum_probs=88.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++||+.++..|.+|+++++++|+|+|+++.          .++.+...|+..+.......+.|++|++||+|
T Consensus        47 ~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~----------~s~~~~~~~~~~i~~~~~~~~~piilvgnK~D  116 (168)
T d2gjsa1          47 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDK----------GSFEKASELRVQLRRARQTDDVPIILVGNKSD  116 (168)
T ss_dssp             EEEEEEEECC-------CHHHHHTSCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHCC--CCCEEEEEECTT
T ss_pred             ccceeeeecccccccceecccchhhhhhhceecccccc----------ccccccccccchhhcccccccceEEEeecccc
Confidence            47889999999999999999999999999999999998          78888889999888776667789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..++.    .              +.+++.++...          .++.+++|||+++.||.++|.++.+.|..+
T Consensus       117 l~~~~~----v--------------~~~~~~~~~~~----------~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~  164 (168)
T d2gjsa1         117 LVRSRE----V--------------SVDEGRACAVV----------FDCKFIETSAALHHNVQALFEGVVRQIRLR  164 (168)
T ss_dssp             CGGGCC----S--------------CHHHHHHHHHH----------HTSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             hhhhcc----h--------------hHHHHHHHHHh----------cCCEEEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            976532    1              11222222221          246789999999999999999999888765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.2e-18  Score=143.49  Aligned_cols=145  Identities=14%  Similarity=0.145  Sum_probs=105.1

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      .|++.   +.|.+.+.|+..         ..+....+.+  +.+++.+||++||+.++..|..|+++++++|+|+|+++.
T Consensus        23 ~~l~~---~~f~~~~~~~~~---------~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~   90 (171)
T d2ew1a1          23 RRFTQ---GLFPPGQGATIG---------VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE   90 (171)
T ss_dssp             HHHHH---SSCCTTCCCCCS---------EEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH
T ss_pred             HHHHh---CCCCCccccccc---------ceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccc
Confidence            44554   455566666542         1222233333  347789999999999999999999999999999999997


Q ss_pred             cchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH
Q psy3651         209 DQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF  288 (334)
Q Consensus       209 d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F  288 (334)
                                .++.....++..+.+. ....+|++|++||+|+..++.    .              +.+.+..|...  
T Consensus        91 ----------~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~----v--------------~~~~~~~~~~~--  139 (171)
T d2ew1a1          91 ----------ESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERRE----V--------------SQQRAEEFSEA--  139 (171)
T ss_dssp             ----------HHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCS----S--------------CHHHHHHHHHH--
T ss_pred             ----------hhhhhhhhhhhhhccc-ccccccEEEEEeecccccccc----h--------------hhhHHHHHHHh--
Confidence                      7777777888777654 346789999999999876431    1              12233333222  


Q ss_pred             HhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         289 KAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       289 ~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                              .++.+++|||++|.||+++|.++...+++.
T Consensus       140 --------~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         140 --------QDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             --------HTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             --------CCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence                    235688999999999999999999888765

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=5e-18  Score=143.42  Aligned_cols=117  Identities=15%  Similarity=0.185  Sum_probs=91.8

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ..+++++||++||+.++..|..++++++++|+|+|+++.          +.+.....++..+.. ....+.|++|++||.
T Consensus        52 ~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~----------~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~  120 (169)
T d3raba_          52 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE----------ESFNAVQDWSTQIKT-YSWDNAQVLLVGNKC  120 (169)
T ss_dssp             EEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHH-HCCSCCEEEEEEECT
T ss_pred             ceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccc----------hhhhhhhhhhhhhhc-ccCCcceEEEEEeec
Confidence            347899999999999999999999999999999999998          666666677766544 345678999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      |+..++.                  ...+.+..+.++          .++.+++|||+++.||+++|+++.+.|++
T Consensus       121 D~~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         121 DMEDERV------------------VSSERGRQLADH----------LGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             TCGGGCC------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             ccccccc------------------cchhhhHHHHHH----------cCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9866532                  112233333322          23678999999999999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.1e-17  Score=140.82  Aligned_cols=140  Identities=13%  Similarity=0.101  Sum_probs=106.2

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..+...   .++.     +.-..+.+.+||++|++.++.++..++.+++++|+|+|+++.          
T Consensus        27 ~~f~~~~~~t~~~~~~---~~~~-----~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------   88 (167)
T d1xtqa1          27 GQFVDSYDPTIENTFT---KLIT-----VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI----------   88 (167)
T ss_dssp             SCCCSCCCSSCCEEEE---EEEE-----ETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCH----------
T ss_pred             CCCCcccCcceecccc---eEEe-----cCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchh----------
Confidence            5677788887654321   1111     112346788999999999999999999999999999999998          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .++.....|+..+.+.....++|++|++||+|+..++.                  -+.+.+.+|..+          .+
T Consensus        89 ~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~------------------v~~~~~~~~a~~----------~~  140 (167)
T d1xtqa1          89 KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV------------------ISYEEGKALAES----------WN  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC------------------SCHHHHHHHHHH----------HT
T ss_pred             hhhhhhhhhhhhhhhcccccccceeeeccccccccccc------------------hhHHHHHHHHHH----------cC
Confidence            78888888888888776667899999999999866532                  112333333222          23


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +.+++|||+++.||+++|+.+...|.
T Consensus       141 ~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         141 AAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            56889999999999999999987765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.4e-18  Score=145.86  Aligned_cols=128  Identities=17%  Similarity=0.162  Sum_probs=98.2

Q ss_pred             eeecceeEEEEEe----eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHH
Q psy3651         157 KATKGITEFTIVI----SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTII  232 (334)
Q Consensus       157 ~~T~Gi~~~~~~~----~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~  232 (334)
                      .||+|++.....+    ..+.+.+||++|+..++..|..|+++++++|+|+|+++.          .++++...|+..+.
T Consensus        33 ~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~Sf~~~~~~~~~~~  102 (170)
T d1i2ma_          33 VATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR----------VTYKNVPNWHRDLV  102 (170)
T ss_dssp             EEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSG----------GGGTTHHHHHHHHH
T ss_pred             ccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccc----------cccchhHHHHHHHh
Confidence            3566655433333    347899999999999999999999999999999999998          66777777777776


Q ss_pred             hhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchH
Q psy3651         233 NNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENI  312 (334)
Q Consensus       233 ~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI  312 (334)
                      ...  .++|++|++||+|+..++.  ... ...                         .  ....++.+++|||+++.||
T Consensus       103 ~~~--~~~piilvgnK~Dl~~~~~--~~~-~~~-------------------------~--~~~~~~~~~e~Sak~~~~v  150 (170)
T d1i2ma_         103 RVC--ENIPIVLCGNKVDIKDRKV--KAK-SIV-------------------------F--HRKKNLQYYDISAKSNYNF  150 (170)
T ss_dssp             HHH--CSCCEEEEEECCCCSCSCC--TTT-SHH-------------------------H--HSSCSSEEEEEBTTTTBTT
T ss_pred             hcc--CCCceeeecchhhhhhhhh--hhH-HHH-------------------------H--HHHcCCEEEEEeCCCCCCH
Confidence            543  5799999999999866543  110 000                         0  1235678899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         313 KIVFNAVKNTILHR  326 (334)
Q Consensus       313 ~~vf~~v~~~I~~~  326 (334)
                      .++|.++.+.|+++
T Consensus       151 ~e~f~~l~~~l~~~  164 (170)
T d1i2ma_         151 EKPFLWLARKLIGD  164 (170)
T ss_dssp             THHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHccC
Confidence            99999999988753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.7e-18  Score=145.16  Aligned_cols=159  Identities=14%  Similarity=0.137  Sum_probs=112.0

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|++.   ++|.++|.||..+........        .-+.+.+++||++||+.++..|..+|++++++|+|+|+++.  
T Consensus        21 ~r~~~---~~f~~~~~~t~~~~~~~~~~~--------~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~--   87 (191)
T d2ngra_          21 ISYTT---NKFPSEYVPTVFDNYAVTVMI--------GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSP--   87 (191)
T ss_dssp             HHHHH---SCCCSSCCCCSEEEEEEEEEE--------TTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCCCcCCceeeecceeEee--------CCceeeeeccccccchhhhhhhhhcccccceeecccccchH--
Confidence            45554   677788888775432211111        11336789999999999999999999999999999999998  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              .++++..++|...+... ..++|++|++||+||...+.  ....+..    -....-+.+.+.+|..+.   
T Consensus        88 --------~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~--~~~~~~~----~~~~~v~~~~~~~~~~~~---  149 (191)
T d2ngra_          88 --------SSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPS--TIEKLAK----NKQKPITPETAEKLARDL---  149 (191)
T ss_dssp             --------HHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHH--HHHHHHT----TTCCCCCHHHHHHHHHHT---
T ss_pred             --------HHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccch--hhhhhhh----cccccccHHHHHHHHHHc---
Confidence                    67778777777776653 46799999999999976543  1111111    112223445554444322   


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                            ..+.+++|||+++.||+++|+.+...+++.
T Consensus       150 ------~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         150 ------KAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             ------TCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             ------CCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence                  335689999999999999999998877653

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.4e-18  Score=141.84  Aligned_cols=146  Identities=14%  Similarity=0.129  Sum_probs=109.0

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCcc
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      +.|++.   ++|.+.|.||..|.....   .     .+.-..+.+++||++|+...+..+..++++++++|+|+|+++. 
T Consensus        20 i~r~~~---~~f~~~~~~t~~~~~~~~---~-----~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~-   87 (167)
T d1kaoa_          20 TVQFVT---GTFIEKYDPTIEDFYRKE---I-----EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQ-   87 (167)
T ss_dssp             HHHHHH---SCCCSCCCTTCCEEEEEE---E-----EETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH-
T ss_pred             HHHHHh---CCCCCccCCceeeeeeee---e-----ecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecch-
Confidence            345554   567788888876532211   1     1111346788999999999999999999999999999999998 


Q ss_pred             chhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHH
Q psy3651         210 QTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFK  289 (334)
Q Consensus       210 ~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~  289 (334)
                               .++.+...|+..+.......++|++|++||+|+...+.  .                ..+.+..+.++   
T Consensus        88 ---------~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~--~----------------~~~~~~~~~~~---  137 (167)
T d1kaoa_          88 ---------QSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESERE--V----------------SSSEGRALAEE---  137 (167)
T ss_dssp             ---------HHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC--S----------------CHHHHHHHHHH---
T ss_pred             ---------hhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhccc--c----------------hHHHHHHHHHH---
Confidence                     88888999998888766667899999999999876532  1                11223222222   


Q ss_pred             hhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         290 AVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       290 ~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                             .++.+++|||++|.||+++|.++.+.|.
T Consensus       138 -------~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         138 -------WGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             -------HTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             -------cCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence                   1356899999999999999999988764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.4e-18  Score=141.70  Aligned_cols=148  Identities=16%  Similarity=0.146  Sum_probs=104.1

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|++.   ++|.++|.||.++......        ......+++++||++|+...+ .+..|+++++++|+|+|+++.  
T Consensus        20 ~r~~~---~~f~~~~~pTi~~~~~~~~--------~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~--   85 (168)
T d2atva1          20 VRFLT---KRFIWEYDPTLESTYRHQA--------TIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDR--   85 (168)
T ss_dssp             HHHHH---SCCCSCCCTTCCEEEEEEE--------EETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCCccCCceeccccccc--------cccccceEEEEeecccccccc-cchhhhcccccceeecccCCc--
Confidence            45554   6777888887654322111        111133778999999998764 566789999999999999997  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              .++.....++..+.......+.|++|++||+|+..++.                  -+.+++.++.++    
T Consensus        86 --------~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~------------------V~~~e~~~~a~~----  135 (168)
T d2atva1          86 --------GSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQ------------------VSTEEGEKLATE----  135 (168)
T ss_dssp             --------HHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC------------------SCHHHHHHHHHH----
T ss_pred             --------cchhhhhhhcccccccccccCcceeeeccchhhhhhcc------------------CcHHHHHHHHHH----
Confidence                    56666666665555555557899999999999865431                  122334333332    


Q ss_pred             hccCCCCCeEEEEEeeecCc-hHHHHHHHHHHHHHHHhh
Q psy3651         291 VKRDEKKPLFHHFTTAVDTE-NIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~-nI~~vf~~v~~~I~~~~l  328 (334)
                            .++.+++|||++|. ||+++|.++.+.|.++.|
T Consensus       136 ------~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~rl  168 (168)
T d2atva1         136 ------LACAFYECSACTGEGNITEIFYELCREVRRRRM  168 (168)
T ss_dssp             ------HTSEEEECCTTTCTTCHHHHHHHHHHHHHHHHC
T ss_pred             ------hCCeEEEEccccCCcCHHHHHHHHHHHHHHhcC
Confidence                  23678999999997 699999999999987754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-18  Score=145.31  Aligned_cols=142  Identities=16%  Similarity=0.145  Sum_probs=102.6

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.+.|.||..|.....   .     .+..+.+.+.+||++|++.++..+..++++++++|+|+|+++.          
T Consensus        25 ~~f~~~~~~T~~~~~~~~---~-----~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~----------   86 (171)
T d2erxa1          25 GTFRESYIPTVEDTYRQV---I-----SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR----------   86 (171)
T ss_dssp             CCCCSSCCCCSCEEEEEE---E-----EETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH----------
T ss_pred             CCCCCccCcceeeccccc---e-----eeccccceeccccccccccccccccccccceeEEEEEeecccc----------
Confidence            667778888876542111   1     1111336788999999999999999999999999999999998          


Q ss_pred             ccHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCC
Q psy3651         219 NRLHESRNIFDTIINNV-IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKK  297 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~-~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~  297 (334)
                      .++.+...|+..+.... ...++|++||+||+|+..++.    .              ..+++.+|.++          .
T Consensus        87 ~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----v--------------~~~e~~~~~~~----------~  138 (171)
T d2erxa1          87 QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----V--------------QSSEAEALART----------W  138 (171)
T ss_dssp             HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----S--------------CHHHHHHHHHH----------H
T ss_pred             cchhcccchhhhhhhhhccCCCCcEEEEeeccccccccc----c--------------cHHHHHHHHHH----------c
Confidence            67777778887776543 356789999999999865431    1              12233333322          2


Q ss_pred             CeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         298 PLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       298 ~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      ++.+++|||+++.||+++|+.+.+.+.++
T Consensus       139 ~~~~~e~Sak~~~~v~e~f~~l~~~~~~~  167 (171)
T d2erxa1         139 KCAFMETSAKLNHNVKELFQELLNLEKRR  167 (171)
T ss_dssp             TCEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred             CCeEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            36789999999999999999998866543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.7e-17  Score=141.84  Aligned_cols=156  Identities=13%  Similarity=0.172  Sum_probs=110.5

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      .|+..   ++|.++|.||..+....          .+.+  ..+.+++||++||+.++..|..++++++++|+|+|+++.
T Consensus        20 ~r~~~---~~f~~~~~~t~~~~~~~----------~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   86 (179)
T d1m7ba_          20 HVFAK---DCFPENYVPTVFENYTA----------SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRP   86 (179)
T ss_dssp             HHHHH---SCCCSSCCCCSEEEEEE----------EEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCH
T ss_pred             HHHHh---CCCCCccCCceeecccc----------cccccceEEeeccccccccccccccccchhhhhhhhheeeecccC
Confidence            45555   67778888886543221          1222  346788999999999999999999999999999999998


Q ss_pred             cchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH
Q psy3651         209 DQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF  288 (334)
Q Consensus       209 d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F  288 (334)
                                .+++....+|...+... ..++|++||+||+|+.....  ...++.    +-...+-+.+.+..+.++. 
T Consensus        87 ----------~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~--~~~~~~----~~~~~~V~~~e~~~~a~~~-  148 (179)
T d1m7ba_          87 ----------ETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVS--TLVELS----NHRQTPVSYDQGANMAKQI-  148 (179)
T ss_dssp             ----------HHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHH--HHHHHH----TTTCCCCCHHHHHHHHHHH-
T ss_pred             ----------CCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccch--hhHHHh----hhhcCcchHHHHHHHHHHh-
Confidence                      77888888887776543 35899999999999865422  111111    1112223344444333322 


Q ss_pred             HhhccCCCCCeEEEEEeeecCch-HHHHHHHHHHHHHH
Q psy3651         289 KAVKRDEKKPLFHHFTTAVDTEN-IKIVFNAVKNTILH  325 (334)
Q Consensus       289 ~~l~~~~~~~i~~~~tsA~d~~n-I~~vf~~v~~~I~~  325 (334)
                              ....+++|||+++.| |+++|+.+...+++
T Consensus       149 --------~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         149 --------GAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             --------TCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             --------CCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence                    235689999999985 99999999998875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.2e-17  Score=140.36  Aligned_cols=115  Identities=14%  Similarity=0.205  Sum_probs=91.7

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++|++.+...|..++++++++++|+|+++.          .+++....|++++...  ..++|++||+||+|
T Consensus        50 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~i~~~--~~~~~iilVgnK~D  117 (164)
T d1z2aa1          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR----------ESFEAISSWREKVVAE--VGDIPTALVQNKID  117 (164)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHH--HCSCCEEEEEECGG
T ss_pred             eeeeeeeccCCccchhhhhhhhhccCceEEEEEeccch----------hhhhhccccccccccc--CCCceEEEeeccCC
Confidence            36789999999999999999999999999999999998          6677777777777654  25789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +..++.                  ...+.+.+|..+          .++.+++|||+++.||.++|+++.+.+++
T Consensus       118 l~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sak~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         118 LLDDSC------------------IKNEEAEGLAKR----------LKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             GGGGCS------------------SCHHHHHHHHHH----------HTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             ccccee------------------eeehhhHHHHHH----------cCCEEEEeccCCCcCHHHHHHHHHHHHhC
Confidence            876532                  112233333332          23678999999999999999999988763

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.2e-17  Score=140.66  Aligned_cols=144  Identities=13%  Similarity=0.158  Sum_probs=98.4

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      .|+..   ++|.+.|.||..+....         ..+..  ....+.+||++|+...+..|..++++++++|+|+|+++.
T Consensus        21 ~r~~~---~~f~~~~~~t~~~~~~~---------~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   88 (167)
T d1z08a1          21 LRYCE---NKFNDKHITTLGASFLT---------KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE   88 (167)
T ss_dssp             HHHHH---CCCCSSCCCCCSCEEEE---------EEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCH
T ss_pred             HHHHh---CCCCcccccccccchhe---------eeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCch
Confidence            45554   67777888876533222         11222  236788999999999999999999999999999999998


Q ss_pred             cchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH
Q psy3651         209 DQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF  288 (334)
Q Consensus       209 d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F  288 (334)
                                .+++....+++.+... .....|++|++||+|+..++.    .              +.+++.++.++  
T Consensus        89 ----------~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~----v--------------~~~e~~~~a~~--  137 (167)
T d1z08a1          89 ----------DSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERH----V--------------SIQEAESYAES--  137 (167)
T ss_dssp             ----------HHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCC----S--------------CHHHHHHHHHH--
T ss_pred             ----------hHHHhhhhhhhhcccc-cccccceeeeccccccccccc----c--------------chHHHHHHHHH--
Confidence                      7777777777766543 235679999999999976532    1              12233322221  


Q ss_pred             HhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         289 KAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       289 ~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                              .++.+++|||+++.||.++|.++.+.|++
T Consensus       138 --------~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         138 --------VGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             --------TTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             --------cCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence                    34678999999999999999999998864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.3e-17  Score=138.85  Aligned_cols=149  Identities=15%  Similarity=0.091  Sum_probs=105.4

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|+..   ++|.+.|.|+....       ..............+.+||++||+.++..|..++.+++++|+|+|+++.  
T Consensus        21 ~r~~~---~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~--   88 (173)
T d2a5ja1          21 LQFTD---KRFQPVHDLTIGVE-------FGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR--   88 (173)
T ss_dssp             HHHHH---SCCCC-----CCSS-------EEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH--
T ss_pred             HHHhc---CCCCCCcccceeec-------cceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecCh--
Confidence            45544   45666676654322       1111222222457889999999999999999999999999999999998  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              .++.+...++..+.+. ...+.|++|++||+|+...+.  .                ..+.+..+.++    
T Consensus        89 --------~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~--~----------------~~~~~~~~a~~----  137 (173)
T d2a5ja1          89 --------ETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRD--V----------------KREEGEAFARE----  137 (173)
T ss_dssp             --------HHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCC--S----------------CHHHHHHHHHH----
T ss_pred             --------HHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhh--h----------------HHHHHHHHHHH----
Confidence                    7888888888888664 346789999999999876543  1                12223323222    


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                            ..+.+++|||++|.||+++|.++.+.|+++.-
T Consensus       138 ------~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~  169 (173)
T d2a5ja1         138 ------HGLIFMETSAKTACNVEEAFINTAKEIYRKIQ  169 (173)
T ss_dssp             ------HTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             ------cCCEEEEecCCCCCCHHHHHHHHHHHHHHHHH
Confidence                  23678999999999999999999999986543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.5e-17  Score=142.32  Aligned_cols=152  Identities=17%  Similarity=0.148  Sum_probs=106.0

Q ss_pred             CCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccccc
Q psy3651         139 SPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRT  218 (334)
Q Consensus       139 ~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~  218 (334)
                      +.|.++|.||..|......        ....+.+++.+||++||+.++..|..++++++++|+|+|+++.          
T Consensus        28 ~~f~~~~~~ti~~~~~~~~--------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------   89 (183)
T d1mh1a_          28 NAFPGEYIPTVFDNYSANV--------MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSP----------   89 (183)
T ss_dssp             SSCCSSCCCCSCCEEEEEE--------EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCH----------
T ss_pred             CCCCcccccceeeceeeee--------eccCcceEEEeecccccccchhhhhhcccccceeeeeeccchH----------
Confidence            6777889888765422211        1122346788999999999999999999999999999999997          


Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCC
Q psy3651         219 NRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKP  298 (334)
Q Consensus       219 nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~  298 (334)
                      .+++....+|...+... ..++|++|++||+|+..++.  ........    ...+.....+..+.++         ...
T Consensus        90 ~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~--~~~~~~~~----~~~~~~~~~~~~~a~~---------~~~  153 (183)
T d1mh1a_          90 ASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKD--TIEKLKEK----KLTPITYPQGLAMAKE---------IGA  153 (183)
T ss_dssp             HHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHH--HHHHHHHT----TCCCCCHHHHHHHHHH---------TTC
T ss_pred             HHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhh--hhhhhhhc----cccchhhHHHHHHHHH---------cCC
Confidence            66666666666666543 46789999999999876542  11111110    0111222333222221         134


Q ss_pred             eEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         299 LFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       299 i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +.+++|||+++.||+++|.++.+.|+
T Consensus       154 ~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         154 VKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             ceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            78899999999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.8e-17  Score=140.10  Aligned_cols=147  Identities=17%  Similarity=0.100  Sum_probs=107.0

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|++.   +.|.++|.||..|....   ++.+     .-..+.+.+||++|+......+..++++++++|+|+|+++.  
T Consensus        23 ~r~~~---~~f~~~~~~t~~~~~~~---~~~~-----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~--   89 (171)
T d2erya1          23 IQFIQ---SYFVTDYDPTIEDSYTK---QCVI-----DDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDR--   89 (171)
T ss_dssp             HHHHH---SCCCSSCCTTCCEEEEE---EEEE-----TTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCcccCcccccceee---eeee-----cccccccccccccccccccccccccccccceEEEeeccccc--
Confidence            34444   67778899988765322   1111     12346788999999999999999999999999999999998  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              .++.....|+..+.......+.|++|++||+|+..++.                  ...+.+.+|.++    
T Consensus        90 --------~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~------------------v~~~~~~~~~~~----  139 (171)
T d2erya1          90 --------GSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQ------------------VTQEEGQQLARQ----  139 (171)
T ss_dssp             --------HHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS------------------SCHHHHHHHHHH----
T ss_pred             --------cchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhcc------------------chHHHHHHHHHH----
Confidence                    77888888888887776667899999999999865432                  112233333221    


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                            .++.+++|||+++.||.++|.++.+.|.+.
T Consensus       140 ------~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         140 ------LKVTYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             ------TTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ------cCCEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence                  346789999999999999999999988653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.2e-18  Score=145.27  Aligned_cols=119  Identities=17%  Similarity=0.211  Sum_probs=95.7

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+++++||++||+.++..|.+++++++++|+|+|+++.          .++.....|+..+..+......|++|++||.|
T Consensus        63 ~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~D  132 (186)
T d2f7sa1          63 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQ----------QSFLNVRNWMSQLQANAYCENPDIVLIGNKAD  132 (186)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCH----------HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTT
T ss_pred             eEEeccccCCcchhhHHHHHHHHhcCCEEEEEEecccc----------ccceeeeeccchhhhhccCCCceEEEEeeecc
Confidence            36799999999999999999999999999999999997          77888777887776666667789999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      +..++-                  -..+.+.+|.++          .++.+++|||+++.||+++|+++.+.|+++.
T Consensus       133 l~~~~~------------------v~~~e~~~~~~~----------~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~  181 (186)
T d2f7sa1         133 LPDQRE------------------VNERQARELADK----------YGIPYFETSAATGQNVEKAVETLLDLIMKRM  181 (186)
T ss_dssp             CGGGCC------------------SCHHHHHHHHHH----------TTCCEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             chhhhc------------------chHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            966531                  112233323221          2466899999999999999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.4e-17  Score=137.93  Aligned_cols=147  Identities=17%  Similarity=0.146  Sum_probs=105.2

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|+..   +.|.+.|.||....       ..............+.+||++||+.+...|..++.+++++|+|+|+++.  
T Consensus        23 ~~~~~---~~~~~~~~~t~~~~-------~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~--   90 (174)
T d2bmea1          23 HQFIE---KKFKDDSNHTIGVE-------FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR--   90 (174)
T ss_dssp             HHHHH---SSCCTTCCCCSEEE-------EEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCcccccccccc-------eeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccc--
Confidence            34444   56667777765322       1111111222346789999999999999999999999999999999997  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              ..+.+...++..+.... ..+.|++|++||+|+..++.  .                ..+.+..|..     
T Consensus        91 --------~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~--~----------------~~~~~~~~~~-----  138 (174)
T d2bmea1          91 --------ETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADRE--V----------------TFLEASRFAQ-----  138 (174)
T ss_dssp             --------HHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCC--S----------------CHHHHHHHHH-----
T ss_pred             --------hhHHHHhhhhccccccc-CCceEEEEEEecccccchhc--h----------------hhhHHHHHHH-----
Confidence                    66677777777766543 46899999999999865432  1                1112221211     


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                           ..++.+++|||+++.||+++|.++.+.|+++
T Consensus       139 -----~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         139 -----ENELMFLETSALTGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             -----HTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             -----hCCCEEEEeeCCCCcCHHHHHHHHHHHHHHH
Confidence                 1357789999999999999999999998865

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=6.5e-17  Score=139.71  Aligned_cols=146  Identities=17%  Similarity=0.187  Sum_probs=106.0

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCC
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSE  207 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~  207 (334)
                      +.|+..   +.|.+.|.||.+....         ...+.+  ..+.+.+||++||+.++..|..+|++++++|+|+|+++
T Consensus        23 i~~l~~---~~~~~~~~~t~~~~~~---------~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~   90 (194)
T d2bcgy1          23 LLRFSD---DTYTNDYISTIGVDFK---------IKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD   90 (194)
T ss_dssp             HHHHHH---CCCCTTCCCSSCCCEE---------EEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC
T ss_pred             HHHHhh---CCCCCCcCCccceeEE---------EEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcc
Confidence            344554   5666778887643321         122222  34788999999999999999999999999999999999


Q ss_pred             ccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHH
Q psy3651         208 YDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNY  287 (334)
Q Consensus       208 ~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~  287 (334)
                      .          .++.+...++..+.. ....+.|++|++||+|+.....  ..                .+.+..+..  
T Consensus        91 ~----------~s~~~~~~~~~~~~~-~~~~~~~iilv~nK~D~~~~~~--~~----------------~~~~~~~~~--  139 (194)
T d2bcgy1          91 Q----------ESFNGVKMWLQEIDR-YATSTVLKLLVGNKCDLKDKRV--VE----------------YDVAKEFAD--  139 (194)
T ss_dssp             H----------HHHHHHHHHHHHHHH-HSCTTCEEEEEEECTTCTTTCC--SC----------------HHHHHHHHH--
T ss_pred             h----------hhhhhHhhhhhhhhh-cccCCceEEEEEeccccccccc--hh----------------HHHHhhhhh--
Confidence            7          777777777776644 4567889999999999876432  11                111111111  


Q ss_pred             HHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         288 FKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       288 F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                              ...+.++++||+++.||+++|+++.+.|.+.
T Consensus       140 --------~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~  170 (194)
T d2bcgy1         140 --------ANKMPFLETSALDSTNVEDAFLTMARQIKES  170 (194)
T ss_dssp             --------HTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             --------ccCcceEEEecCcCccHHHHHHHHHHHHHHH
Confidence                    1335689999999999999999999988864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.1e-17  Score=136.67  Aligned_cols=142  Identities=16%  Similarity=0.158  Sum_probs=102.4

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      .|+..   ++|.+.|.|+......         ...+..  ..+.+.+||++||+.++..|..++.+++++|+|+|+++.
T Consensus        18 ~r~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~   85 (164)
T d1yzqa1          18 TRFMY---DSFDNTYQATIGIDFL---------SKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNV   85 (164)
T ss_dssp             HHHHH---SCCCSSCCCCCSEEEE---------EEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred             HHHHh---CCCCCccccceeeecc---------ceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccc
Confidence            44444   5666777776532211         112222  237789999999999999999999999999999999998


Q ss_pred             cchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH
Q psy3651         209 DQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF  288 (334)
Q Consensus       209 d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F  288 (334)
                                .++.+...++..+.+.. ..++|++|++||.|+.+.+.  .                ..+.+..+.+   
T Consensus        86 ----------~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~--~----------------~~~~~~~~~~---  133 (164)
T d1yzqa1          86 ----------NSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQ--V----------------SIEEGERKAK---  133 (164)
T ss_dssp             ----------HHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCC--S----------------CHHHHHHHHH---
T ss_pred             ----------cchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhh--h----------------hHHHHHHHHH---
Confidence                      67777788888776543 36789999999999865432  1                1122222221   


Q ss_pred             HhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         289 KAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       289 ~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                             ..++.+++|||++|.||+++|++|.+.|
T Consensus       134 -------~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         134 -------ELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             -------HTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             -------HcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence                   1346789999999999999999988754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-17  Score=141.45  Aligned_cols=118  Identities=11%  Similarity=0.172  Sum_probs=96.8

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ..+++.+||++|++..+..|..++.+++++|+|+|+++.          +++.....++..+.........|+++++||.
T Consensus        54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~  123 (177)
T d1x3sa1          54 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR----------DTFVKLDNWLNELETYCTRNDIVNMLVGNKI  123 (177)
T ss_dssp             EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH----------HHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred             cccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCc----------cccccchhhhhhhcccccccceeeEEEeecc
Confidence            457899999999999999999999999999999999998          8888889999988776667788999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |.....+  .                 .+.+.+|.++          ..+.+++|||++|.||.++|+++.+.+++.
T Consensus       124 d~~~~~v--~-----------------~~~~~~~~~~----------~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         124 DKENREV--D-----------------RNEGLKFARK----------HSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             TSSSCCS--C-----------------HHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             ccccccc--c-----------------HHHHHHHHHH----------CCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            9765433  1                 1222222221          346789999999999999999999888753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.6e-17  Score=136.34  Aligned_cols=115  Identities=19%  Similarity=0.199  Sum_probs=90.6

Q ss_pred             eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKT  249 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~  249 (334)
                      ..+++.+||++||+.++..|..++++++++|+|+|+++.          .++.....++..+.+ ......|++|++||+
T Consensus        51 ~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~  119 (166)
T d1z0fa1          51 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARN-LTNPNTVIILIGNKA  119 (166)
T ss_dssp             EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH----------HHHHTHHHHHHHHHH-HSCTTCEEEEEEECT
T ss_pred             EEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCch----------HHHHHHHHHHHHHHh-hccccceEEEEcccc
Confidence            346899999999999999999999999999999999997          677777777776654 345778999999999


Q ss_pred             CcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         250 DLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       250 Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      |+.....                  ...+.+..+.++          ..+.+++|||++|.||+++|.++.+.|
T Consensus       120 Dl~~~~~------------------~~~~~~~~~~~~----------~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         120 DLEAQRD------------------VTYEEAKQFAEE----------NGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             TCGGGCC------------------SCHHHHHHHHHH----------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cchhhcc------------------cHHHHHHHHHHH----------cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            9865432                  112233323221          346789999999999999999998876

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.1e-17  Score=138.48  Aligned_cols=145  Identities=14%  Similarity=0.176  Sum_probs=104.8

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|+..   ++|.+.|.||..+.....       ........+.+.+||++||+.++..|..++++++++|+|+|+++.  
T Consensus        24 ~~l~~---~~f~~~~~~t~~~~~~~~-------~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~--   91 (170)
T d1r2qa_          24 LRFVK---GQFHEFQESTIGAAFLTQ-------TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE--   91 (170)
T ss_dssp             HHHHH---SCCCTTCCCCSSEEEEEE-------EEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCcccccccccccccc-------eeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchh--
Confidence            45554   566677777654332111       111122347789999999999999999999999999999999998  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              .++.....++..+.+. ...+.|++|++||+|+..++.    .              +.+.+.++..     
T Consensus        92 --------~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~----v--------------~~e~~~~~~~-----  139 (170)
T d1r2qa_          92 --------ESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRA----V--------------DFQEAQSYAD-----  139 (170)
T ss_dssp             --------HHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCC----S--------------CHHHHHHHHH-----
T ss_pred             --------hHHHHHHHHhhhhhhc-cCCCceEEeeccccccccccc----c--------------cHHHHHHHHH-----
Confidence                    6777777777777654 346799999999999876532    1              1122222221     


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                           ...+.+++|||++|.||+++|.++.+.|.
T Consensus       140 -----~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         140 -----DNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             -----HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             -----hcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence                 13467999999999999999999987664

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.8e-16  Score=133.29  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=101.1

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|+..   ++|.++|.||..+.......       ........+.+||++|++..+..|..++.+++++|+|+|+++.  
T Consensus        22 ~rl~~---~~f~~~~~~t~~~~~~~~~~-------~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~--   89 (167)
T d1z0ja1          22 WRFVE---DSFDPNINPTIGASFMTKTV-------QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE--   89 (167)
T ss_dssp             HHHHH---SCCCTTCCCCCSEEEEEEEE-------EETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCcccccccccccccccc-------cccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechh--
Confidence            45554   66777788876543221111       1111235678999999999999999999999999999999997  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              ..+.....++..+.. ....+.|++|++||+|+..++.                  ...+.+.+|..+    
T Consensus        90 --------~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~------------------v~~~~~~~~~~~----  138 (167)
T d1z0ja1          90 --------ETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVRE------------------VMERDAKDYADS----  138 (167)
T ss_dssp             --------HHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCC------------------SCHHHHHHHHHH----
T ss_pred             --------hhhhhHHHhhhhhhh-ccCCcceEEEecccchhccccc------------------hhHHHHHHHHHH----
Confidence                    556555555555443 4457889999999999965532                  112233322221    


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                            .++.+++|||+++.||+++|.+|.+.|
T Consensus       139 ------~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         139 ------IHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             ------TTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ------cCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence                  346789999999999999999998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1e-17  Score=140.94  Aligned_cols=145  Identities=15%  Similarity=0.164  Sum_probs=108.4

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQ  210 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~  210 (334)
                      .|++.   +.|.+.|.||.++.......+.|        ..+.+.+||++|+..++..+..++++++++|+|+|+++.  
T Consensus        21 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~--   87 (166)
T d1ctqa_          21 IQLIQ---NHFVDEYDPTIEDSYRKQVVIDG--------ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT--   87 (166)
T ss_dssp             HHHHH---CCCCCSCCCCSEEEEEEEEEETT--------EEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCH--
T ss_pred             HHHHh---CCCCCccCCccceeeccceeeec--------eeeeeeeeeccCccccccchhhhhhcccccceeeccccc--
Confidence            34444   56677788876644322222111        346789999999999999999999999999999999997  


Q ss_pred             hhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHh
Q psy3651         211 TLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKA  290 (334)
Q Consensus       211 ~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~  290 (334)
                              ..++....|+..+.+.....++|++|++||+|+..+.+                   +.+.+.+|.++    
T Consensus        88 --------~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-------------------~~~~~~~~~~~----  136 (166)
T d1ctqa_          88 --------KSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTV-------------------ESRQAQDLARS----  136 (166)
T ss_dssp             --------HHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCS-------------------CHHHHHHHHHH----
T ss_pred             --------ccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccc-------------------cHHHHHHHHHH----
Confidence                    77888888888888776667899999999999855432                   12233333322    


Q ss_pred             hccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         291 VKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       291 l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                            .++.+++|||++|.||+++|.++.+.|.+
T Consensus       137 ------~~~~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         137 ------YGIPYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             ------HTCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ------hCCeEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence                  23568999999999999999999988764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=7.5e-17  Score=136.30  Aligned_cols=120  Identities=13%  Similarity=0.176  Sum_probs=82.4

Q ss_pred             cceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh---cCCCCCcEEEEEeC
Q psy3651         172 IPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN---VIFRNVSFILFLNK  248 (334)
Q Consensus       172 ~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~---~~~~~~piiL~lNK  248 (334)
                      ..+.+||++|++.....|..+++.++++|+|+|+++.          .++..+..|+.++...   ....+.|++|++||
T Consensus        52 ~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK  121 (175)
T d1ky3a_          52 ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNA----------SSFENIKSWRDEFLVHANVNSPETFPFVILGNK  121 (175)
T ss_dssp             EEEEEECCC----------CCSTTCCEEEEEEETTCH----------HHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred             ccceeeccCCchhhhhHHHHHhhccceEEEEeecccc----------cccchhhhcchhhhhhhhhcccccCcEEEEecc
Confidence            5688999999999999999999999999999999998          6677777777777543   23357899999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      +|+..++-   ..              +.+.+.+|..+         -..+.+++|||+++.||+++|.++.+.+++++
T Consensus       122 ~Dl~~~~~---~v--------------~~~~~~~~~~~---------~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         122 IDAEESKK---IV--------------SEKSAQELAKS---------LGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             TTSCGGGC---CS--------------CHHHHHHHHHH---------TTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhc---ch--------------hHHHHHHHHHH---------cCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            99876431   11              11222222211         12356899999999999999999999998875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-16  Score=134.47  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=103.2

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEee--CcceeeeecCCcccccccccccccCCCeEEEEEeCCCc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVIS--NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~--~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      .|+..   +.|.+.|.|+....         .....+..+  .+.+.+||++|++.++..|..++.+++++|+|+|+++.
T Consensus        22 ~~~~~---~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~   89 (175)
T d2f9la1          22 SRFTR---NEFNLESKSTIGVE---------FATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH   89 (175)
T ss_dssp             HHHHH---SCCCC---CCCSCE---------EEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH
T ss_pred             HHHHh---CCCCCcccccccce---------eeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCc
Confidence            45554   55556666654321         222333333  36888999999999999999999999999999999998


Q ss_pred             cchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHH
Q psy3651         209 DQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYF  288 (334)
Q Consensus       209 d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F  288 (334)
                                .++.....++..+.+.. ..++|++|++||+|+..++.  ..                .+.+..+..   
T Consensus        90 ----------~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~--~~----------------~~~~~~~~~---  137 (175)
T d2f9la1          90 ----------LTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRA--VP----------------TDEARAFAE---  137 (175)
T ss_dssp             ----------HHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCC--SC----------------HHHHHHHHH---
T ss_pred             ----------ccchhHHHHHHHHHHhc-CCCCcEEEEEeeeccccccc--ch----------------HHHHHHhhc---
Confidence                      77888888888876643 36789999999999976532  11                111111111   


Q ss_pred             HhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         289 KAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       289 ~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                             .....+++|||+++.||+++|+++.+.|.+.
T Consensus       138 -------~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~  168 (175)
T d2f9la1         138 -------KNNLSFIETSALDSTNVEEAFKNILTEIYRI  168 (175)
T ss_dssp             -------HTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             -------ccCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence                   1345789999999999999999999988754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=5.5e-17  Score=137.41  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=79.2

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+++||++||+.++..|..++++++++|+|+|+++.          .++.....++..+.+ ....+.|++|++||.|
T Consensus        54 ~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D  122 (173)
T d2fu5c1          54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE----------KSFDNIRNWIRNIEE-HASADVEKMILGNKCD  122 (173)
T ss_dssp             EEEEEEEEC---------CCTTTTTCSEEEEEEETTCH----------HHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--
T ss_pred             EEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCCh----------hhHHHHHHHHHHhhh-hccCCceEEEEEeccc
Confidence            47788999999999999999999999999999999998          777777777777754 3467799999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +...+.  .                ..+.+..+..+          ..+.+++|||+++.||.++|.++.+.|..+
T Consensus       123 ~~~~~~--~----------------~~~~~~~~~~~----------~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k  170 (173)
T d2fu5c1         123 VNDKRQ--V----------------SKERGEKLALD----------YGIKFMETSAKANINVENAFFTLARDIKAK  170 (173)
T ss_dssp             CCSCCC--S----------------CHHHHHHHHHH----------HTCEEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred             chhhcc--c----------------HHHHHHHHHHh----------cCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            866432  1                11222222221          346789999999999999999999988765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=134.10  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=83.8

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+++++||++||+.++..|..++++++++|+|+|+++.          .++.....++..+.... ....|++|++||.|
T Consensus        55 ~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d  123 (170)
T d2g6ba1          55 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNK----------ASFDNIQAWLTEIHEYA-QHDVALMLLGNKVD  123 (170)
T ss_dssp             EEEEEEEECCCC--------CCGGGCSEEEEEEETTCH----------HHHHTHHHHHHHHHHHS-CTTCEEEEEEECCS
T ss_pred             EEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcc----------cchhhhhhhhhhhhhcc-CCCceEEEEEeeec
Confidence            36889999999999999999999999999999999997          67778888887776653 35679999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTIL  324 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~  324 (334)
                      +..++.                  ...+.+..+...          ..+.+++|||+++.||+++|+++.+.|.
T Consensus       124 ~~~~~~------------------v~~~~~~~~~~~----------~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         124 SAHERV------------------VKREDGEKLAKE----------YGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             TTSCCC------------------SCHHHHHHHHHH----------HTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhccc------------------ccHHHHHHHHHH----------cCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            876532                  112233333322          2356899999999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.6e-16  Score=131.08  Aligned_cols=145  Identities=14%  Similarity=0.141  Sum_probs=98.9

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCCc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEY  208 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~  208 (334)
                      .|+..   ++|.++|.||..+...         ...+..  ..+.+.+||++|+...+..|..++..++++|+|+|+++.
T Consensus        24 ~~~~~---~~~~~~~~~t~~~~~~---------~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   91 (174)
T d1wmsa_          24 NRYVT---NKFDTQLFHTIGVEFL---------NKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS   91 (174)
T ss_dssp             HHHHH---SCCCC----CCSEEEE---------EEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH
T ss_pred             HHHHh---CCCCCccccceeeeee---------eeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecc
Confidence            44444   5666777776543211         112222  236788999999999999999999999999999999987


Q ss_pred             cchhhcccccccHHHHHHHHHHHHh---hcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHH
Q psy3651         209 DQTLVEDRRTNRLHESRNIFDTIIN---NVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLL  285 (334)
Q Consensus       209 d~~l~ed~~~nrl~esl~lf~~i~~---~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~  285 (334)
                                .++.....|++++..   .....+.|++||+||.|+.+..+                   +.+++.+|.+
T Consensus        92 ----------~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v-------------------~~~~~~~~~~  142 (174)
T d1wmsa_          92 ----------QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV-------------------STEEAQAWCR  142 (174)
T ss_dssp             ----------HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS-------------------CHHHHHHHHH
T ss_pred             ----------cccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccC-------------------cHHHHHHHHH
Confidence                      455555555555543   33446789999999999865333                   2233333433


Q ss_pred             HHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         286 NYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       286 ~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                      +.         ..+.+++|||+++.||+++|+++.+.|+.
T Consensus       143 ~~---------~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         143 DN---------GDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             HT---------TCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             Hc---------CCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence            21         23568999999999999999999998864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.1e-16  Score=134.32  Aligned_cols=116  Identities=13%  Similarity=0.201  Sum_probs=87.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      .+.+.+||++||+.++..|..++++++++|+|+|+++.          .++.....++..+. .......|+++++||.|
T Consensus        50 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~-~~~~~~~~~i~~~~k~d  118 (166)
T d1g16a_          50 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE----------RTFTNIKQWFKTVN-EHANDEAQLLLVGNKSD  118 (166)
T ss_dssp             EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH----------HHHHTHHHHHHHHH-HHSCTTCEEEEEEECTT
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCc----------cCHHHHHhhhhhhh-ccccCcceeeeecchhh
Confidence            36778899999999999999999999999999999997          44444434444433 33456779999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      +..+..  .                 .+.+.++...          .++.+++|||+++.||+++|+++.+.|.++
T Consensus       119 ~~~~~~--~-----------------~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         119 METRVV--T-----------------ADQGEALAKE----------LGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             CTTCCS--C-----------------HHHHHHHHHH----------HTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             hhhhhh--h-----------------HHHHHHHHHh----------cCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            865433  1                 2223323222          236689999999999999999999988764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=6.5e-16  Score=131.84  Aligned_cols=146  Identities=14%  Similarity=0.220  Sum_probs=103.3

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEE--EEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeC
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFT--IVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSS  205 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~--~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dl  205 (334)
                      +.|+..   ++|.+.|.||.           |.....  +..  ..+.+.+||++|+...+..|..++.+++++|+|+|.
T Consensus        19 i~~l~~---~~f~~~~~~t~-----------~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~   84 (184)
T d1vg8a_          19 MNQYVN---KKFSNQYKATI-----------GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDV   84 (184)
T ss_dssp             HHHHHH---SCCCSSCCCCC-----------SEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEET
T ss_pred             HHHHHh---CCCCCCcCCcc-----------ceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecc
Confidence            345555   56667777754           333222  222  236788999999999999999999999999999999


Q ss_pred             CCccchhhcccccccHHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHH
Q psy3651         206 SEYDQTLVEDRRTNRLHESRNIFDTIINNV---IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQT  282 (334)
Q Consensus       206 s~~d~~l~ed~~~nrl~esl~lf~~i~~~~---~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~  282 (334)
                      ++.          ..+.....|++.+....   ...+.|++|++||+|+..+++  ..                 +.+..
T Consensus        85 ~~~----------~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~--~~-----------------~~~~~  135 (184)
T d1vg8a_          85 TAP----------NTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV--AT-----------------KRAQA  135 (184)
T ss_dssp             TCH----------HHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS--CH-----------------HHHHH
T ss_pred             cch----------hhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccch--hH-----------------HHHHH
Confidence            997          56666666776665542   234679999999999866433  11                 11111


Q ss_pred             HHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHh
Q psy3651         283 FLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRN  327 (334)
Q Consensus       283 fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~  327 (334)
                      +..+         ...+.+++|||+++.||.++|+++.+.++++.
T Consensus       136 ~~~~---------~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~  171 (184)
T d1vg8a_         136 WCYS---------KNNIPYFETSAKEAINVEQAFQTIARNALKQE  171 (184)
T ss_dssp             HHHH---------TTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHH---------hcCCeEEEEcCCCCcCHHHHHHHHHHHHHhcc
Confidence            1111         23467899999999999999999999888753

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.2e-16  Score=129.82  Aligned_cols=116  Identities=15%  Similarity=0.184  Sum_probs=89.0

Q ss_pred             Ccceeeeec---CCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy3651         171 NIPFLFVDV---GGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLN  247 (334)
Q Consensus       171 ~~~~~i~Dv---gGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lN  247 (334)
                      ...+.+||+   +||+.+  .|..|+++++++|+|+|+++.          .++.+...|+..+.......++|++|++|
T Consensus        52 ~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~----------~s~~~~~~~~~~i~~~~~~~~~piilvgn  119 (172)
T d2g3ya1          52 SATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDR----------ASFEKASELRIQLRRARQTEDIPIILVGN  119 (172)
T ss_dssp             EEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCH----------HHHHHHHHHHHHHHTSGGGTTSCEEEEEE
T ss_pred             eeeeeeeccccccccccc--cccccccccceeeeeeccccc----------chhhhhhhhhhhhhhccccCCceEEEEec
Confidence            345566665   466544  688899999999999999998          88899999999888776667899999999


Q ss_pred             CCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHH
Q psy3651         248 KTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHR  326 (334)
Q Consensus       248 K~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~  326 (334)
                      |+||..++.    .              ..+++.++...          .++.+++|||++|.||+++|.++.+.|..+
T Consensus       120 K~Dl~~~~~----v--------------~~~~~~~~a~~----------~~~~~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         120 KSDLVRCRE----V--------------SVSEGRACAVV----------FDCKFIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             CTTCGGGCC----S--------------CHHHHHHHHHH----------HTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccccccc----c--------------cHHHHHHHHHH----------cCCeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            999876531    1              12233333222          246789999999999999999999988654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.8e-15  Score=127.27  Aligned_cols=146  Identities=16%  Similarity=0.161  Sum_probs=105.7

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEe--eCcceeeeecCCcccccccccccccCCCeEEEEEeCCC
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVI--SNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSE  207 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~--~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~  207 (334)
                      +.|+..   +.|.+.|.||.++.+.         ...+..  ..+.+.+||++|++.+...|..++.+++++|+|+|+++
T Consensus        20 i~~~~~---~~f~~~~~~t~~~~~~---------~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~   87 (170)
T d1ek0a_          20 VLRFVS---NDFAENKEPTIGAAFL---------TQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTK   87 (170)
T ss_dssp             HHHHHH---SCCCTTCCCCSSEEEE---------EEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred             HHHHHh---CCCCccccccccceee---------ccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCc
Confidence            344444   5666777777653221         122233  34789999999999999999999999999999999999


Q ss_pred             ccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHH
Q psy3651         208 YDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNY  287 (334)
Q Consensus       208 ~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~  287 (334)
                      .          .++.....++..+... .....|+++++||+|+..+.-   ...            -..+.+.++.++.
T Consensus        88 ~----------~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~---~~~------------v~~~~~~~~~~~~  141 (170)
T d1ek0a_          88 P----------QSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGG---ERK------------VAREEGEKLAEEK  141 (170)
T ss_dssp             H----------HHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSC---CCC------------SCHHHHHHHHHHH
T ss_pred             c----------cchhhhhhhhhhhccc-cccccceeeeecccccccccc---hhh------------hhHHHHHHHHHHc
Confidence            7          7777777777766554 346789999999999866421   111            1233444444432


Q ss_pred             HHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         288 FKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       288 F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                                ++.+++|||+++.||+++|.+|.+.|
T Consensus       142 ----------~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         142 ----------GLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             ----------TCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             ----------CCEEEEecCCCCcCHHHHHHHHHHHh
Confidence                      46789999999999999999887654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2.5e-15  Score=125.48  Aligned_cols=141  Identities=15%  Similarity=0.165  Sum_probs=99.8

Q ss_pred             HHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCccccc-ccccccccCCCeEEEEEeCCCcc
Q psy3651         131 DRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQR-RKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       131 ~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r-~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      .|+..   ++|.+.|.||.......       ....+..+...+.+||..|+.... ..|..|+++++++|+|+|+++. 
T Consensus        20 ~~~~~---~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~-   88 (165)
T d1z06a1          20 YRFCA---GRFPDRTEATIGVDFRE-------RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNM-   88 (165)
T ss_dssp             HHHHH---SSCCSSCCCCCSCCEEE-------EEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCH-
T ss_pred             HHHHh---CCCCCccCcccccccce-------eeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehh-
Confidence            45554   56667777765432211       112223345778899998888765 4588899999999999999998 


Q ss_pred             chhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHH
Q psy3651         210 QTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFK  289 (334)
Q Consensus       210 ~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~  289 (334)
                               +++++...++..+.......++|++|++||+|+..++-                  -+.+.+.+|.++   
T Consensus        89 ---------~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~------------------v~~~~~~~~~~~---  138 (165)
T d1z06a1          89 ---------ASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQ------------------VPTDLAQKFADT---  138 (165)
T ss_dssp             ---------HHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC------------------SCHHHHHHHHHH---
T ss_pred             ---------hhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccc------------------hhHHHHHHHHHH---
Confidence                     78888888999988877677899999999999876521                  112233333321   


Q ss_pred             hhccCCCCCeEEEEEeeec---CchHHHHHHHH
Q psy3651         290 AVKRDEKKPLFHHFTTAVD---TENIKIVFNAV  319 (334)
Q Consensus       290 ~l~~~~~~~i~~~~tsA~d---~~nI~~vf~~v  319 (334)
                             .++.+++|||++   +.||+++|.++
T Consensus       139 -------~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         139 -------HSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             -------TTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             -------CCCEEEEEecccCCcCcCHHHHHHHh
Confidence                   235688999986   45999999886

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.59  E-value=5.6e-15  Score=124.17  Aligned_cols=144  Identities=19%  Similarity=0.309  Sum_probs=110.5

Q ss_pred             HHHHHhhhCCCCCCCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCcc
Q psy3651         130 WDRISRRVNSPLFQDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYD  209 (334)
Q Consensus       130 l~Ri~~~~~~~f~~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d  209 (334)
                      +.|+..       ..+.++        .+|.|.....+...+..+.+||++|++..+..|..++..++++++|+|.++. 
T Consensus        32 i~rl~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~-   95 (177)
T d1zj6a1          32 LYQFSM-------NEVVHT--------SPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDR-   95 (177)
T ss_dssp             HHHHHT-------TSCEEE--------ECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCT-
T ss_pred             HHHHhc-------CCCCcc--------ccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecccccc-
Confidence            456676       666543        4677777788888899999999999999999999999999999999999997 


Q ss_pred             chhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHH
Q psy3651         210 QTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFK  289 (334)
Q Consensus       210 ~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~  289 (334)
                               .++..+...+..........+.|++|++||+|+....   ...++.+.                      .
T Consensus        96 ---------~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~i~~~----------------------~  141 (177)
T d1zj6a1          96 ---------ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM---TVAEISQF----------------------L  141 (177)
T ss_dssp             ---------TTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC---CHHHHHHH----------------------H
T ss_pred             ---------cchhhhhhhhhhhhhcccccceEEEEEEEcccccccC---cHHHHHHH----------------------H
Confidence                     7788888888887777777899999999999986542   12222221                      2


Q ss_pred             hhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         290 AVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       290 ~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      .+.....+++.+++|||++|+||+++|+|+.+.|
T Consensus       142 ~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         142 KLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            2233334678999999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.58  E-value=7e-15  Score=120.91  Aligned_cols=126  Identities=22%  Similarity=0.371  Sum_probs=99.5

Q ss_pred             eEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         163 TEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       163 ~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      .........+.+.+||++|+...+..|.+++.+++++|+++|+++.          ..+..+..++.++.........|+
T Consensus        35 ~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i  104 (160)
T d1r8sa_          35 NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR----------ERVNEAREELMRMLAEDELRDAVL  104 (160)
T ss_dssp             CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGGGTTCEE
T ss_pred             EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh----------HHHHHHHHHHHHHHHhhcccCceE
Confidence            3445556778999999999999999999999999999999999997          778888889999888777788999


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ++++||.|+.....   ...+...                      ..........+.+++|||++|+||+++|+||.+.
T Consensus       105 ~~v~~k~d~~~~~~---~~~i~~~----------------------~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         105 LVFANKQDLPNAMN---AAEITDK----------------------LGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             EEEEECTTSTTCCC---HHHHHHH----------------------TTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             EEEeeccccccccc---HHHHHHH----------------------HHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhc
Confidence            99999999865321   1111110                      1112223466889999999999999999999875


Q ss_pred             H
Q psy3651         323 I  323 (334)
Q Consensus       323 I  323 (334)
                      |
T Consensus       160 l  160 (160)
T d1r8sa_         160 L  160 (160)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.3e-14  Score=120.84  Aligned_cols=119  Identities=12%  Similarity=0.100  Sum_probs=84.9

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh--hcCCCCCcEEEEEeC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN--NVIFRNVSFILFLNK  248 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~--~~~~~~~piiL~lNK  248 (334)
                      .+.+.+||++|+..+     +|+++++++|+|+|+++.          .+++....|++.+..  .....+.|++||+||
T Consensus        51 ~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~----------~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k  115 (175)
T d2bmja1          51 THLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDE----------NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ  115 (175)
T ss_dssp             EEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCH----------HHHHHHHHHHHHHHHHCC--CCCCEEEEEEEC
T ss_pred             EEEEEEeeccccccc-----ccccccceeEEEeecccc----------hhhhhhHHHHHHHHHHhhcccCCccEEEEeee
Confidence            477899999999864     488999999999999997          666666666666643  233467799999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHHHhh
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~~~l  328 (334)
                      .|+-.+..  .  .+            +.+.+..+..         ....+.+++|||+++.||.++|..+.+.+++..-
T Consensus       116 ~d~d~~~~--~--~v------------~~~~~~~~~~---------~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         116 DRISASSP--R--VV------------GDARARALCA---------DMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             TTCCSSSC--C--CS------------CHHHHHHHHH---------TSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhhh--c--ch------------hHHHHHHHHH---------HhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhh
Confidence            99744311  1  11            1122222211         1245788999999999999999999999887654


Q ss_pred             h
Q psy3651         329 R  329 (334)
Q Consensus       329 ~  329 (334)
                      +
T Consensus       171 ~  171 (175)
T d2bmja1         171 Q  171 (175)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=7.5e-13  Score=108.24  Aligned_cols=137  Identities=23%  Similarity=0.370  Sum_probs=104.6

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||.|.........+....+||++|+......|.+++..++++++++|.++.          ..+.+...++....+...
T Consensus        29 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----------~~~~~~~~~~~~~~~~~~   98 (166)
T d2qtvb1          29 QPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP----------ERFDEARVELDALFNIAE   98 (166)
T ss_dssp             CCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCTT
T ss_pred             eceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccch----------hhhhhhhHHHHhhhhhhc
Confidence            4677777778888899999999999999999999999999999999999997          677788888888888888


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|+++++||.|+..+.   ....+.+.+..-....              .. .....+.+.+++|||++|+||.++|
T Consensus        99 ~~~~~i~i~~~k~d~~~~~---~~~~i~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~SA~tg~Gv~e~~  160 (166)
T d2qtvb1          99 LKDVPFVILGNKIDAPNAV---SEAELRSALGLLNTTG--------------SQ-RIEGQRPVEVFMCSVVMRNGYLEAF  160 (166)
T ss_dssp             TTTCCEEEEEECTTSSSCC---CHHHHHHHHTCSSCCC------------------CCSSCCEEEEEEBTTTTBSHHHHH
T ss_pred             cCCceEEEEeccccccccC---CHHHHHHHhhhhhhhH--------------HH-hhcccCCCEEEEeeCCCCCCHHHHH
Confidence            8899999999999986542   2222222110000000              00 0012366889999999999999999


Q ss_pred             HHHHH
Q psy3651         317 NAVKN  321 (334)
Q Consensus       317 ~~v~~  321 (334)
                      +||.+
T Consensus       161 ~~l~~  165 (166)
T d2qtvb1         161 QWLSQ  165 (166)
T ss_dssp             HHHTT
T ss_pred             HHHhC
Confidence            99863

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.44  E-value=1.2e-12  Score=107.83  Aligned_cols=134  Identities=18%  Similarity=0.289  Sum_probs=106.3

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .+|.|........++..+.+||.+|....+..|..++..++++++++|+++.          .........+........
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  103 (169)
T d1upta_          34 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDR----------DRIGISKSELVAMLEEEE  103 (169)
T ss_dssp             CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCC----------TTHHHHHHHHHHHHTCGG
T ss_pred             ecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhc----------chhhhccchhhhhhhhhc
Confidence            4577777777778899999999999999999999999999999999999987          677777777777777766


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ....|+++++||.|+..+..   ...+...                      ........+.+.+++|||++|+||.++|
T Consensus       104 ~~~~~i~iv~nk~Dl~~~~~---~~~i~~~----------------------~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_         104 LRKAILVVFANKQDMEQAMT---SSEMANS----------------------LGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             GTTCEEEEEEECTTSTTCCC---HHHHHHH----------------------HTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             cccceEEEEEeecccccccc---HHHHHHH----------------------HHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            77899999999999876421   1122111                      1111223467889999999999999999


Q ss_pred             HHHHHHHHH
Q psy3651         317 NAVKNTILH  325 (334)
Q Consensus       317 ~~v~~~I~~  325 (334)
                      +++.+.|.+
T Consensus       159 ~~l~~~l~~  167 (169)
T d1upta_         159 EWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999987754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.35  E-value=1.6e-12  Score=108.72  Aligned_cols=144  Identities=22%  Similarity=0.338  Sum_probs=101.5

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .||.+.+...+..++..+..||+.|+...+..|.+++...+++++++|+++.          ....+....+......+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~----------~~~~~~~~~~~~~~~~~~  111 (186)
T d1f6ba_          42 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADH----------ERLLESKEELDSLMTDET  111 (186)
T ss_dssp             -CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCG----------GGHHHHHHHHHHHHTCGG
T ss_pred             ecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeeeccCc----------cchHHHHHHHHHhhcccc
Confidence            3566777777777888999999999999999999999999999999999997          777888888888887777


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||.|+....   ....+.+.+...........          ........+.+.+++|||++|+||.++|
T Consensus       112 ~~~~~~li~~~K~D~~~~~---~~~~i~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~SA~tg~Gi~e~~  178 (186)
T d1f6ba_         112 IANVPILILGNKIDRPEAI---SEERLREMFGLYGQTTGKGS----------VSLKELNARPLEVFMCSVLKRQGYGEGF  178 (186)
T ss_dssp             GTTSCEEEEEECTTSTTCC---CHHHHHHHHTCTTTCCCSSC----------CCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred             cCCCceEEEEeccCccccC---CHHHHHHHHhhcccchhhhh----------hhHHHhhcCCCEEEEEeCCCCCCHHHHH
Confidence            8899999999999986531   22222222211111000000          0011122356889999999999999999


Q ss_pred             HHHHHHH
Q psy3651         317 NAVKNTI  323 (334)
Q Consensus       317 ~~v~~~I  323 (334)
                      +|+.+.|
T Consensus       179 ~~l~~~i  185 (186)
T d1f6ba_         179 RWMAQYI  185 (186)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHhh
Confidence            9998643

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=5e-10  Score=93.99  Aligned_cols=117  Identities=11%  Similarity=0.108  Sum_probs=76.5

Q ss_pred             EEEEEeeCcceeeeecCCccccccccc--------ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWF--------QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~--------~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      .......+..+.+||++|+......+.        .+++++++||||+|.++.          ..  +...++...++. 
T Consensus        45 ~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~----------~~--~~~~~i~~~l~~-  111 (178)
T d1wf3a1          45 RGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHP----------PT--PEDELVARALKP-  111 (178)
T ss_dssp             EEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSC----------CC--HHHHHHHHHHGG-
T ss_pred             cceeeeeeeeeeecccccccccccccchhcccccccccccccceeeeechhhh----------hc--ccccchhhheec-
Confidence            344556678899999999977655543        346789999999999874          11  122333333432 


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      ...+.|+++|+||+|+....-                      ...+.+.+.        -....++++||+++.||.++
T Consensus       112 ~~~~~piilv~NK~Dl~~~~~----------------------~~~~~~~~~--------~~~~~~~~iSA~~~~gi~~L  161 (178)
T d1wf3a1         112 LVGKVPILLVGNKLDAAKYPE----------------------EAMKAYHEL--------LPEAEPRMLSALDERQVAEL  161 (178)
T ss_dssp             GTTTSCEEEEEECGGGCSSHH----------------------HHHHHHHHT--------STTSEEEECCTTCHHHHHHH
T ss_pred             cccchhhhhhhcccccccCHH----------------------HHHHHHHhh--------cccCceEEEecCCCCCHHHH
Confidence            345789999999999854311                      111111111        11245678999999999999


Q ss_pred             HHHHHHHH
Q psy3651         316 FNAVKNTI  323 (334)
Q Consensus       316 f~~v~~~I  323 (334)
                      +++|.+.+
T Consensus       162 ~~~i~~~l  169 (178)
T d1wf3a1         162 KADLLALM  169 (178)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhC
Confidence            99887643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.7e-09  Score=92.69  Aligned_cols=88  Identities=14%  Similarity=0.247  Sum_probs=65.0

Q ss_pred             eecceeEEEEEe---eCcceeeeecCCccccc-ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         158 ATKGITEFTIVI---SNIPFLFVDVGGQRSQR-RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       158 ~T~Gi~~~~~~~---~~~~~~i~DvgGq~~~r-~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      ||+|.+...+.+   .++.+.+||++|++..+ ..|..++.+++++++|+|+++..         ..+.+...++.+++.
T Consensus        30 ~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~---------~~~~~~~~~l~~~l~  100 (207)
T d2fh5b1          30 TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQ---------REVKDVAEFLYQVLI  100 (207)
T ss_dssp             CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHH---------HHHHHHHHHHHHHHH
T ss_pred             CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEccccc---------ccHHHHHHHHHHHHH
Confidence            456655555554   35789999999999886 57888999999999999999862         224555566656554


Q ss_pred             h-cC-CCCCcEEEEEeCCCcchh
Q psy3651         234 N-VI-FRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       234 ~-~~-~~~~piiL~lNK~Dl~~e  254 (334)
                      . +. ..++|++|++||+|+..+
T Consensus       101 ~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1         101 DSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             HHHTSTTCCEEEEEEECTTSTTC
T ss_pred             hHHHhhcCCcEEEEEECcccCCC
Confidence            3 22 345799999999999764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.4e-09  Score=89.06  Aligned_cols=111  Identities=21%  Similarity=0.344  Sum_probs=78.2

Q ss_pred             EEEEeeCcceeeeecCCccccccc--------ccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         165 FTIVISNIPFLFVDVGGQRSQRRK--------WFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       165 ~~~~~~~~~~~i~DvgGq~~~r~k--------w~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      ..+...+..+.+||++|.......        ...++.+++.++|++|.++.+          .. +...++..+... .
T Consensus        42 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~----------~~-~~~~~~~~~~~~-~  109 (161)
T d2gj8a1          42 EHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTD----------AV-DPAEIWPEFIAR-L  109 (161)
T ss_dssp             EEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCC----------CC-SHHHHCHHHHHH-S
T ss_pred             eeeeccCceeeeccccccccccccchhHHHHHHHHHHHhccccceeecccccc----------ch-hhhhhhhhhhhh-c
Confidence            355667788999999997665433        235578999999999999862          22 223344444443 2


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHH
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVF  316 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf  316 (334)
                      ..+.|++|++||+||..+..     .+.+                              .....++++||+++.||++++
T Consensus       110 ~~~~~iilv~NK~Dl~~~~~-----~~~~------------------------------~~~~~~~~iSAk~~~gi~~L~  154 (161)
T d2gj8a1         110 PAKLPITVVRNKADITGETL-----GMSE------------------------------VNGHALIRLSARTGEGVDVLR  154 (161)
T ss_dssp             CTTCCEEEEEECHHHHCCCC-----EEEE------------------------------ETTEEEEECCTTTCTTHHHHH
T ss_pred             ccccceeeccchhhhhhhHH-----HHHH------------------------------hCCCcEEEEECCCCCCHHHHH
Confidence            35789999999999865432     1111                              134678999999999999999


Q ss_pred             HHHHHH
Q psy3651         317 NAVKNT  322 (334)
Q Consensus       317 ~~v~~~  322 (334)
                      +++.+.
T Consensus       155 ~~l~~~  160 (161)
T d2gj8a1         155 NHLKQS  160 (161)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.85  E-value=4.4e-09  Score=88.51  Aligned_cols=130  Identities=16%  Similarity=0.106  Sum_probs=85.9

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCC
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFR  238 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~  238 (334)
                      |.......+...+..+.++|++|+..+.+........++++++|+|.++-           ........+..+..    .
T Consensus        46 ~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g-----------~~~~~~~~~~~~~~----~  110 (179)
T d1wb1a4          46 TIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEG-----------PKTQTGEHMLILDH----F  110 (179)
T ss_dssp             ----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTC-----------SCHHHHHHHHHHHH----T
T ss_pred             eccccccccccCCccccccccccccccccchhhhhhhccccccccccccc-----------cchhhhhhhhhhhh----c
Confidence            33344556666788899999999999888888889999999999999873           22333444444333    4


Q ss_pred             CCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHH
Q psy3651         239 NVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNA  318 (334)
Q Consensus       239 ~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~  318 (334)
                      +.|+++++||+|+....-      +..           .+...+.+.+....     .....++++||++|+||.++++.
T Consensus       111 ~~p~iiv~NKiD~~~~~~------~~~-----------~~~~~~~~~~~~~~-----~~~~~iv~iSA~~g~gi~eL~~~  168 (179)
T d1wb1a4         111 NIPIIVVITKSDNAGTEE------IKR-----------TEMIMKSILQSTHN-----LKNSSIIPISAKTGFGVDELKNL  168 (179)
T ss_dssp             TCCBCEEEECTTSSCHHH------HHH-----------HHHHHHHHHHHSSS-----GGGCCEEECCTTTCTTHHHHHHH
T ss_pred             CCcceeccccccccCHHH------HHH-----------HHHHHHHHHHHhhc-----CCCCeEEEEEccCCcCHHHHHHH
Confidence            689999999999865321      110           01111112111111     13356789999999999999999


Q ss_pred             HHHHHHH
Q psy3651         319 VKNTILH  325 (334)
Q Consensus       319 v~~~I~~  325 (334)
                      |.+.+-+
T Consensus       169 I~~~l~~  175 (179)
T d1wb1a4         169 IITTLNN  175 (179)
T ss_dssp             HHHHHHH
T ss_pred             HHhcCCc
Confidence            8876654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.80  E-value=7e-09  Score=86.06  Aligned_cols=125  Identities=17%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             ecceeEEEEEeeCcceeeeecCCccccc---------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQR---------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD  229 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r---------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~  229 (334)
                      |.+.....+...+..+.+||+.|.....         ..+..++..++++++++|.++.           ...+...+..
T Consensus        35 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~-----------~~~~~~~~~~  103 (171)
T d1mkya1          35 TRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRG-----------ITKEDESLAD  103 (171)
T ss_dssp             --CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTC-----------CCHHHHHHHH
T ss_pred             eeccccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeeccccc-----------cccccccccc
Confidence            3334455667778889999999954322         2334456789999999998764           2222233333


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC
Q psy3651         230 TIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT  309 (334)
Q Consensus       230 ~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~  309 (334)
                      .+..    .++|+++++||+|+..+.-    ..+.                     ..+..+.   ..  .++++||++|
T Consensus       104 ~l~~----~~~pviiv~NK~Dl~~~~~----~~~~---------------------~~~~~~~---~~--~~i~iSAk~g  149 (171)
T d1mkya1         104 FLRK----STVDTILVANKAENLREFE----REVK---------------------PELYSLG---FG--EPIPVSAEHN  149 (171)
T ss_dssp             HHHH----HTCCEEEEEESCCSHHHHH----HHTH---------------------HHHGGGS---SC--SCEECBTTTT
T ss_pred             cccc----ccccccccchhhhhhhhhh----hHHH---------------------HHHHhcC---CC--CeEEEecCCC
Confidence            3322    3579999999999865421    1111                     1111111   11  2477999999


Q ss_pred             chHHHHHHHHHHHHHHHhh
Q psy3651         310 ENIKIVFNAVKNTILHRNL  328 (334)
Q Consensus       310 ~nI~~vf~~v~~~I~~~~l  328 (334)
                      .||.+++++|.+.+-++++
T Consensus       150 ~gid~L~~~i~~~l~e~~~  168 (171)
T d1mkya1         150 INLDTMLETIIKKLEEKGL  168 (171)
T ss_dssp             BSHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhCCCCCC
Confidence            9999999999998766543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.78  E-value=4.4e-09  Score=88.05  Aligned_cols=115  Identities=15%  Similarity=0.203  Sum_probs=72.1

Q ss_pred             eCcceeeeecCCccccc-------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcE
Q psy3651         170 SNIPFLFVDVGGQRSQR-------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSF  242 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r-------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~pi  242 (334)
                      .+..+++||++|.....       ..+......++.+++++|.+....        ..+.....++....  ....+.|+
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~--------~~~~~~~~~~~~~~--~~~~~~p~  116 (180)
T d1udxa2          47 EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPL--------KTLETLRKEVGAYD--PALLRRPS  116 (180)
T ss_dssp             SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHH--------HHHHHHHHHHHHHC--HHHHHSCE
T ss_pred             CCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccc--------cchhhhhhhhhccc--cccchhhh
Confidence            56789999999965321       223345678999999999877421        12222222222111  11234699


Q ss_pred             EEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         243 ILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       243 iL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      ++++||+|+..+..   ...+.                     +.+.      ...+.++.+||++|+||+++++.|.+.
T Consensus       117 iiv~NK~D~~~~~~---~~~~~---------------------~~~~------~~~~~~~~iSA~tg~gid~L~~~i~~~  166 (180)
T d1udxa2         117 LVALNKVDLLEEEA---VKALA---------------------DALA------REGLAVLPVSALTGAGLPALKEALHAL  166 (180)
T ss_dssp             EEEEECCTTSCHHH---HHHHH---------------------HHHH------TTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHHH---HHHHH---------------------HHHH------hcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            99999999866532   11111                     1111      134568899999999999999999887


Q ss_pred             HH
Q psy3651         323 IL  324 (334)
Q Consensus       323 I~  324 (334)
                      +-
T Consensus       167 l~  168 (180)
T d1udxa2         167 VR  168 (180)
T ss_dssp             HH
T ss_pred             Hh
Confidence            64

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.74  E-value=3.3e-08  Score=86.37  Aligned_cols=139  Identities=11%  Similarity=0.036  Sum_probs=85.8

Q ss_pred             eeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q psy3651         169 ISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNK  248 (334)
Q Consensus       169 ~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK  248 (334)
                      .++..+.++||+|+..+-+........+|++|+|+|..+-           -..+....+..+..    .+.|+||++||
T Consensus        67 ~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g-----------~~~~~~~~~~~~~~----~~~p~iivlNK  131 (227)
T d1g7sa4          67 ETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEG-----------FKPQTQEALNILRM----YRTPFVVAANK  131 (227)
T ss_dssp             GTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTC-----------CCHHHHHHHHHHHH----TTCCEEEEEEC
T ss_pred             ccccccccccccceecccccchhcccccceEEEEEecccC-----------cccchhHHHHHhhc----CCCeEEEEEEC
Confidence            3456788999999999888877788899999999999872           33445555555544    56899999999


Q ss_pred             CCcchhhhccccchhhhhCCCCCCCCcc-----HHHHHHHHHHHHHhhcc------C--CCCCeEEEEEeeecCchHHHH
Q psy3651         249 TDLLAEKLRTSKTSIAEHFPEFEGDPQD-----MQAVQTFLLNYFKAVKR------D--EKKPLFHHFTTAVDTENIKIV  315 (334)
Q Consensus       249 ~Dl~~eki~~~~~~l~~~Fp~y~g~~~~-----~~~~~~fi~~~F~~l~~------~--~~~~i~~~~tsA~d~~nI~~v  315 (334)
                      +|+..........++...+.   .....     .+...+++.........      .  ....+.++.+||.+|.||.++
T Consensus       132 ~D~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~L  208 (227)
T d1g7sa4         132 IDRIHGWRVHEGRPFMETFS---KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPEL  208 (227)
T ss_dssp             GGGSTTCCCCTTCCHHHHHT---TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHH
T ss_pred             ccCCCchhhhhhHHHHHhhh---cchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHH
Confidence            99876432001112222111   11000     11111222222221100      0  113367888999999999999


Q ss_pred             HHHHHHHHHH
Q psy3651         316 FNAVKNTILH  325 (334)
Q Consensus       316 f~~v~~~I~~  325 (334)
                      ++.+.+..-+
T Consensus       209 l~~l~~l~~~  218 (227)
T d1g7sa4         209 LTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988775533

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.74  E-value=2.7e-09  Score=89.20  Aligned_cols=128  Identities=13%  Similarity=0.115  Sum_probs=73.2

Q ss_pred             eCcceeeeecCCcccc-----------ccccc----ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         170 SNIPFLFVDVGGQRSQ-----------RRKWF----QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~-----------r~kw~----~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ....+++||++|-...           +..+.    ...+.++++++|+|.+..++................+++.+.. 
T Consensus        41 ~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-  119 (184)
T d2cxxa1          41 EWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-  119 (184)
T ss_dssp             EETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-
T ss_pred             ccccceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-
Confidence            3345789999995221           12222    3346899999999998754332221111111122333443333 


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                         .+.|+++|+||+|+.+.+-                      .....+...+.....  .....++.+||+++.||.+
T Consensus       120 ---~~~p~iiv~NK~D~~~~~~----------------------~~~~~~~~~~~~~~~--~~~~~~~~vSA~~g~gi~~  172 (184)
T d2cxxa1         120 ---LDIPTIVAVNKLDKIKNVQ----------------------EVINFLAEKFEVPLS--EIDKVFIPISAKFGDNIER  172 (184)
T ss_dssp             ---TTCCEEEEEECGGGCSCHH----------------------HHHHHHHHHHTCCGG--GHHHHEEECCTTTCTTHHH
T ss_pred             ---cCCCEEEEEeeeehhhhHH----------------------HHHHHHHHHhccccc--ccCCeEEEEECCCCCCHHH
Confidence               4689999999999754321                      111122222211100  1123467899999999999


Q ss_pred             HHHHHHHHHHH
Q psy3651         315 VFNAVKNTILH  325 (334)
Q Consensus       315 vf~~v~~~I~~  325 (334)
                      +++++.+.+-+
T Consensus       173 L~~~i~~~l~e  183 (184)
T d2cxxa1         173 LKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHccC
Confidence            99999887754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.67  E-value=8.1e-08  Score=80.23  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=75.2

Q ss_pred             EEEEEeeCcceeeeecCCcccccc------------cccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHH
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRR------------KWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTI  231 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~------------kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i  231 (334)
                      ...+...+..+.++|++|......            .+..+.++++++++|+|.+..           ...+...+...+
T Consensus        48 ~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~-----------~~~~~~~~~~~~  116 (186)
T d1mkya2          48 DDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQG-----------ITRQDQRMAGLM  116 (186)
T ss_dssp             CEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTC-----------CCHHHHHHHHHH
T ss_pred             eeeeccCCceeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeeccccc-----------chhhHHHHHHHH
Confidence            344556677778888888765443            334455788999999999763           223333333333


Q ss_pred             HhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCch
Q psy3651         232 INNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTEN  311 (334)
Q Consensus       232 ~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~n  311 (334)
                      ..    .+.|+|+++||+|+...+-  .  .+              +...+.+.+.+..     .....++.+||++|.|
T Consensus       117 ~~----~~~~~i~v~nK~D~~~~~~--~--~~--------------~~~~~~~~~~~~~-----~~~~~i~~vSa~~g~g  169 (186)
T d1mkya2         117 ER----RGRASVVVFNKWDLVVHRE--K--RY--------------DEFTKLFREKLYF-----IDYSPLIFTSADKGWN  169 (186)
T ss_dssp             HH----TTCEEEEEEECGGGSTTGG--G--CH--------------HHHHHHHHHHCGG-----GTTSCEEECBTTTTBS
T ss_pred             HH----cCCceeeeccchhhhcchh--h--hh--------------hhHHHHHHHHhcc-----cCCCeEEEEeCCCCCC
Confidence            32    4679999999999865431  1  11              1112233333211     1234578999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy3651         312 IKIVFNAVKNTILH  325 (334)
Q Consensus       312 I~~vf~~v~~~I~~  325 (334)
                      |.+++++|.+.+-.
T Consensus       170 v~~L~~~i~~~~~~  183 (186)
T d1mkya2         170 IDRMIDAMNLAYAS  183 (186)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999765543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.60  E-value=1.4e-08  Score=85.20  Aligned_cols=116  Identities=13%  Similarity=0.122  Sum_probs=71.8

Q ss_pred             eCcceeeeecCCccccc----cccc---ccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHH--HHHHhhcCCCCC
Q psy3651         170 SNIPFLFVDVGGQRSQR----RKWF---QCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF--DTIINNVIFRNV  240 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r----~kw~---~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf--~~i~~~~~~~~~  240 (334)
                      ++..+.+||++|.....    ..+.   .....++.++++++.+..+..        ...+.....  ..........+.
T Consensus        47 ~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~k  118 (185)
T d1lnza2          47 DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGR--------DPYDDYLTINQELSEYNLRLTER  118 (185)
T ss_dssp             SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCC--------CHHHHHHHHHHHHHHSCSSTTTS
T ss_pred             CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccc--------hhhhhhhhhhhccchhhhhccCC
Confidence            34678999999974322    2222   234568899999988876322        111211111  122233455678


Q ss_pred             cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      |+++++||+|+...+-  ....+                     .+.   +    .....++.+||++|.||.++++++.
T Consensus       119 p~ivv~NK~Dl~~~~~--~~~~~---------------------~~~---~----~~~~~v~~iSA~~g~Gi~~L~~~i~  168 (185)
T d1lnza2         119 PQIIVANKMDMPEAAE--NLEAF---------------------KEK---L----TDDYPVFPISAVTREGLRELLFEVA  168 (185)
T ss_dssp             CBCBEEECTTSTTHHH--HHHHH---------------------HHH---C----CSCCCBCCCSSCCSSTTHHHHHHHH
T ss_pred             cchhhccccchHhHHH--HHHHH---------------------HHH---h----ccCCcEEEEECCCCCCHHHHHHHHH
Confidence            9999999999976532  11111                     111   1    1234578899999999999999998


Q ss_pred             HHH
Q psy3651         321 NTI  323 (334)
Q Consensus       321 ~~I  323 (334)
                      +.+
T Consensus       169 ~~L  171 (185)
T d1lnza2         169 NQL  171 (185)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            865

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=5.3e-08  Score=82.62  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=60.3

Q ss_pred             EEEEEeeCcceeeeecCCccccccccccccc----CCCeEEEEEeCCCccchhhcccccccHHHHHHHH---HHHHhhcC
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQRRKWFQCFD----SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIF---DTIINNVI  236 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~----~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf---~~i~~~~~  236 (334)
                      ...+..++..+.+||++|++..+..|..++.    .++.+++++|.++-.         ..+.+...++   ..+++...
T Consensus        38 ~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~---------~~~~~~~~~l~~~~~~~~~~~  108 (209)
T d1nrjb_          38 LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP---------KKLTTTAEFLVDILSITESSC  108 (209)
T ss_dssp             EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCT---------TCCHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEeccc---------ccHHHHHHHHHHHHHHHHHHH
Confidence            4445667899999999999999999988874    458999999988642         3344444333   33344455


Q ss_pred             CCCCcEEEEEeCCCcchh
Q psy3651         237 FRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~e  254 (334)
                      ..++|++|++||+|+...
T Consensus       109 ~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_         109 ENGIDILIACNKSELFTA  126 (209)
T ss_dssp             TTCCCEEEEEECTTSTTC
T ss_pred             hccCCeEEEEEeeccccc
Confidence            578999999999998653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.52  E-value=1.3e-07  Score=76.85  Aligned_cols=110  Identities=24%  Similarity=0.367  Sum_probs=70.3

Q ss_pred             EEEEEeeCcceeeeecCCccccc---------ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhh
Q psy3651         164 EFTIVISNIPFLFVDVGGQRSQR---------RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINN  234 (334)
Q Consensus       164 ~~~~~~~~~~~~i~DvgGq~~~r---------~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~  234 (334)
                      ...+...+..+.+||++|-....         ......+.++++||+|+|.++.           ...+....+..+   
T Consensus        40 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~-----------~~~~~~~~~~~~---  105 (160)
T d1xzpa2          40 SEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSP-----------LDEEDRKILERI---  105 (160)
T ss_dssp             CEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSC-----------CCHHHHHHHHHH---
T ss_pred             eEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCC-----------cchhhhhhhhhc---
Confidence            44556678899999999953321         1112235789999999999985           222333333322   


Q ss_pred             cCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         235 VIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       235 ~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                         ...++++++||.|+..+ .  ....+                     .+.   +.    ....++.+||++++||.+
T Consensus       106 ---~~~~~i~~~~k~d~~~~-~--~~~~~---------------------~~~---~~----~~~~~~~vSA~~g~gi~~  151 (160)
T d1xzpa2         106 ---KNKRYLVVINKVDVVEK-I--NEEEI---------------------KNK---LG----TDRHMVKISALKGEGLEK  151 (160)
T ss_dssp             ---TTSSEEEEEEECSSCCC-C--CHHHH---------------------HHH---HT----CSTTEEEEEGGGTCCHHH
T ss_pred             ---ccccceeeeeeccccch-h--hhHHH---------------------HHH---hC----CCCcEEEEECCCCCCHHH
Confidence               45689999999998653 2  11111                     111   11    123467899999999999


Q ss_pred             HHHHHHH
Q psy3651         315 VFNAVKN  321 (334)
Q Consensus       315 vf~~v~~  321 (334)
                      ++++|.+
T Consensus       152 L~~~I~k  158 (160)
T d1xzpa2         152 LEESIYR  158 (160)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.50  E-value=2.6e-07  Score=79.08  Aligned_cols=132  Identities=9%  Similarity=0.125  Sum_probs=86.1

Q ss_pred             eeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcC
Q psy3651         157 KATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVI  236 (334)
Q Consensus       157 ~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~  236 (334)
                      .-|+......|...+..+.+.|++|++.+-+--..-...+|++|+|+|.++=           -..+..+.+..+..   
T Consensus        51 giTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G-----------~~~QT~~~~~~a~~---  116 (196)
T d1d2ea3          51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDG-----------PMPQTREHLLLARQ---  116 (196)
T ss_dssp             TEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTC-----------SCHHHHHHHHHHHH---
T ss_pred             CccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCC-----------CchhHHHHHHHHHH---
Confidence            3444444566777889999999999999877777778889999999999873           33444444444432   


Q ss_pred             CCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC-------
Q psy3651         237 FRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT-------  309 (334)
Q Consensus       237 ~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~-------  309 (334)
                      +...|+|++.||+|+..+.-  .                 .+.+..-++..+..+... ...+++..+||++|       
T Consensus       117 ~~~~~iIv~iNK~D~~~~~~--~-----------------~~~i~~~i~~~l~~~~~~-~~~~pii~iSa~~g~~~~~~~  176 (196)
T d1d2ea3         117 IGVEHVVVYVNKADAVQDSE--M-----------------VELVELEIRELLTEFGYK-GEETPIIVGSALCALEQRDPE  176 (196)
T ss_dssp             TTCCCEEEEEECGGGCSCHH--H-----------------HHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHTTCCTT
T ss_pred             hcCCcEEEEEecccccccHH--H-----------------HHHHHHHHHHHHHHhCCC-cccCEEEEEEccccccccCcc
Confidence            24458999999999754210  0                 111122222322222221 24577889999998       


Q ss_pred             ---chHHHHHHHHHHH
Q psy3651         310 ---ENIKIVFNAVKNT  322 (334)
Q Consensus       310 ---~nI~~vf~~v~~~  322 (334)
                         .++..+++.|.+.
T Consensus       177 ~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         177 LGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHhh
Confidence               5888888776543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=8.8e-07  Score=79.61  Aligned_cols=92  Identities=16%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      -+|.|-+    +.|.-|+......+.+++.++.++||.|...|-.--.....-+|++|+|+|.++           .--.
T Consensus        46 ~D~~~~E----~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~-----------Gv~~  110 (276)
T d2bv3a2          46 MDFMEQE----RERGITITAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQ-----------GVEP  110 (276)
T ss_dssp             -------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTT-----------SSCH
T ss_pred             EeccHHH----HhcCCccccceeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccC-----------Ccch
Confidence            5677755    456778888889999999999999999999998888888999999999999998           5666


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcch
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLLA  253 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~  253 (334)
                      ....+|+....    .+.|.|+|.||+|...
T Consensus       111 ~T~~~w~~a~~----~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2         111 QSETVWRQAEK----YKVPRIAFANKMDKTG  137 (276)
T ss_dssp             HHHHHHHHHHT----TTCCEEEEEECTTSTT
T ss_pred             hHHHHHHHHHH----cCCCEEEEEecccccc
Confidence            77888877654    5789999999999865

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.37  E-value=6.8e-07  Score=76.73  Aligned_cols=85  Identities=16%  Similarity=0.266  Sum_probs=66.1

Q ss_pred             ceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHh
Q psy3651         154 HARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIIN  233 (334)
Q Consensus       154 ~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~  233 (334)
                      +.|.-|+......+..++.++.++||+|++.+-+....-.+.+|++|+|+|.++           .-..+..+.|..+..
T Consensus        49 ~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~-----------Gv~~qt~~~~~~~~~  117 (204)
T d2c78a3          49 RARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAAD-----------GPMPQTREHILLARQ  117 (204)
T ss_dssp             HHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTT-----------CCCHHHHHHHHHHHH
T ss_pred             hcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCC-----------CCcHHHHHHHHHHHH
Confidence            345556666677888899999999999999998888888889999999999987           344555565655543


Q ss_pred             hcCCCCCc-EEEEEeCCCcch
Q psy3651         234 NVIFRNVS-FILFLNKTDLLA  253 (334)
Q Consensus       234 ~~~~~~~p-iiL~lNK~Dl~~  253 (334)
                          .++| +++++||+|+..
T Consensus       118 ----~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3         118 ----VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             ----TTCCCEEEEEECGGGCC
T ss_pred             ----cCCCeEEEEEEecccCC
Confidence                3555 888899999754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=7.9e-07  Score=74.81  Aligned_cols=97  Identities=7%  Similarity=0.118  Sum_probs=61.4

Q ss_pred             ccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhh
Q psy3651         187 RKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEH  266 (334)
Q Consensus       187 ~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~  266 (334)
                      ..+.+.+.++++|++|+|.+..           -..+..++++.+..    .+.|+++++||+|+..+.-      +.+ 
T Consensus        97 ~~~~~~~~~~~~vi~viD~~~~-----------~~~~~~~~~~~l~~----~~~piivv~NK~D~~~~~~------~~~-  154 (195)
T d1svia_          97 ETYITTREELKAVVQIVDLRHA-----------PSNDDVQMYEFLKY----YGIPVIVIATKADKIPKGK------WDK-  154 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSC-----------CCHHHHHHHHHHHH----TTCCEEEEEECGGGSCGGG------HHH-
T ss_pred             hhhhccccchhhhhhhhhcccc-----------cccccccccccccc----ccCcceechhhccccCHHH------HHH-
Confidence            3455667788999999998763           11222333333332    4579999999999754321      111 


Q ss_pred             CCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         267 FPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       267 Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                                   ..+.+++.   +.  ......++.+||+++.|++++++++.+.|
T Consensus       155 -------------~~~~~~~~---l~--~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         155 -------------HAKVVRQT---LN--IDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             -------------HHHHHHHH---HT--CCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -------------HHHHHHHH---hc--ccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence                         11122222   11  12446678899999999999999998865

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.33  E-value=1.2e-06  Score=78.27  Aligned_cols=91  Identities=12%  Similarity=0.144  Sum_probs=74.0

Q ss_pred             CCCCCCcccccceeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHH
Q psy3651         143 QDYIPSNKDILHARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLH  222 (334)
Q Consensus       143 ~~y~PT~~Dil~~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~  222 (334)
                      -+|.|-+    +.|..|+......+..++.++.++||+|+..|..--..-.+-+|++|+|+|..+           .-..
T Consensus        42 ~D~~~~E----~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~-----------Gv~~  106 (267)
T d2dy1a2          42 TDYTPEA----KLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEA-----------GVQV  106 (267)
T ss_dssp             SCCSHHH----HHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTT-----------CSCH
T ss_pred             ccchHHH----HHhCCeEEeecccccccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccC-----------Cccc
Confidence            4555533    345667777778889999999999999999988877888889999999999998           5667


Q ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEeCCCcc
Q psy3651         223 ESRNIFDTIINNVIFRNVSFILFLNKTDLL  252 (334)
Q Consensus       223 esl~lf~~i~~~~~~~~~piiL~lNK~Dl~  252 (334)
                      .....|+.+..    .+.|.++|.||+|..
T Consensus       107 ~t~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2         107 GTERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             hhHHHHHhhhh----ccccccccccccccc
Confidence            77788877665    568999999999964

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.30  E-value=6.9e-07  Score=76.34  Aligned_cols=116  Identities=13%  Similarity=0.128  Sum_probs=74.5

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ...+.+.|++|+..+-+........++.+|+|+|..+-          -......+.+.-+..   +.-.|+|+++||+|
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~g----------i~~~~t~e~~~~~~~---~~i~~iIV~vNK~D  151 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP----------FPQPQTREHFVALGI---IGVKNLIIVQNKVD  151 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSC----------SSCHHHHHHHHHHHH---TTCCCEEEEEECGG
T ss_pred             eEEEEEeccchHHHHHhhhhcceecccccccccccccc----------ccchhHHHHHHHHHH---cCCceeeeccccCC
Confidence            34688999999999877777778899999999999872          011222233322222   23358999999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +....-  .....                  .-+. .+..  ......+++..+||++|.||.++++.|...
T Consensus       152 l~~~~~--~~~~~------------------~~~~-~~l~--~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         152 VVSKEE--ALSQY------------------RQIK-QFTK--GTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             GSCHHH--HHHHH------------------HHHH-HHHT--TSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CccchH--HHHHH------------------HHHH-HHhc--cccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            865432  11000                  0111 1111  111245778999999999999998877653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.26  E-value=8e-07  Score=75.23  Aligned_cols=116  Identities=11%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.++|++|+..+-+.-..-...++++++|+|..+-          -......+.+.-+..   ....+++++.||+|
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g----------~~~~~t~e~~~~~~~---~~~~~iiv~inK~D  143 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEP----------CPRPQTREHLMALQI---IGQKNIIIAQNKIE  143 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC----------SSCHHHHHHHHHHHH---HTCCCEEEEEECGG
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhh----------hhhhhhHHHHHHHHH---hcCccceeeeeccc
Confidence            45688999999998877777778889999999998873          111222222222211   12236888999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                      +....-  ....+              +    -+.+.+.   ......+.+..+||++|+||.++++.|.+.
T Consensus       144 ~~d~~~--~~~~~--------------~----~~~~~~~---~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         144 LVDKEK--ALENY--------------R----QIKEFIE---GTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             GSCHHH--HHHHH--------------H----HHHHHHT---TSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             chhhHH--HHHHH--------------H----HHHHHhc---cccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            865421  00000              0    1111111   111245678899999999999998888764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.18  E-value=4.6e-06  Score=72.41  Aligned_cols=122  Identities=12%  Similarity=0.117  Sum_probs=76.4

Q ss_pred             eecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCC
Q psy3651         158 ATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIF  237 (334)
Q Consensus       158 ~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~  237 (334)
                      .|+-.....+...+.++.++|++|+..+-+--..-..-+|++|+|+|..+-           -..+..+.+.-+..    
T Consensus        75 ~ti~~~~~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G-----------~~~Qt~e~~~~~~~----  139 (222)
T d1zunb3          75 ITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG-----------VQTQTRRHSYIASL----  139 (222)
T ss_dssp             CCCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC-----------SCHHHHHHHHHHHH----
T ss_pred             CCceeeEEEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccC-----------cccchHHHHHHHHH----
Confidence            334444556666788999999999999988888888899999999999873           33334433332221    


Q ss_pred             CCC-cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHH
Q psy3651         238 RNV-SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIK  313 (334)
Q Consensus       238 ~~~-piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~  313 (334)
                      .++ .+|++.||+|+....-    ..              .+...+-+...+.+... ....+.+..+||..|.||.
T Consensus       140 ~gv~~iiv~vNK~D~~~~~~----~~--------------~~~~~~~l~~~~~~~~~-~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         140 LGIKHIVVAINKMDLNGFDE----RV--------------FESIKADYLKFAEGIAF-KPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TTCCEEEEEEECTTTTTSCH----HH--------------HHHHHHHHHHHHHTTTC-CCSEEEEEECCTTTCTTTS
T ss_pred             cCCCEEEEEEEccccccccc----ee--------------hhhhHHHHhhhhHhhcc-CCCceEEEEEEcccCccCC
Confidence            333 5899999999865210    00              01111111121122211 1245778889999999883

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.91  E-value=1.6e-05  Score=68.60  Aligned_cols=135  Identities=14%  Similarity=0.139  Sum_probs=78.2

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      |..|+......++.++..+.+.|+.|+..+-.--..-..-+|++|+|+|..+=-+.--+ .......|.+.+...     
T Consensus        65 rg~ti~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~-~~~~qt~e~l~~~~~-----  138 (224)
T d1jnya3          65 RGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGM-SVEGQTREHIILAKT-----  138 (224)
T ss_dssp             ---------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHH-STTCHHHHHHHHHHH-----
T ss_pred             CCccccceEEEEecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccc-cccchhHHHHHHHHH-----
Confidence            33444455566777889999999999999988888888889999999999973100000 001223333333322     


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~  314 (334)
                       +.-.++|++.||+|+....-  ...              ..+.+...+...+...... ...+.+..+||..|.||.+
T Consensus       139 -~~~~~iIv~iNK~D~~~~~~--~~~--------------~~~~v~~~i~~~~~~~~~~-~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         139 -MGLDQLIVAVNKMDLTEPPY--DEK--------------RYKEIVDQVSKFMRSYGFN-TNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             -TTCTTCEEEEECGGGSSSTT--CHH--------------HHHHHHHHHHHHHHHTTCC-CTTCEEEECBTTTTBTTTB
T ss_pred             -hCCCceEEEEEcccCCCccc--cHH--------------HHHHHHHHHHhHHHhcCCC-cccCeEEEEEccCCCCccc
Confidence             23447899999999864211  111              1223333344333333222 3567888999999998843

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.80  E-value=2.2e-05  Score=68.87  Aligned_cols=139  Identities=13%  Similarity=0.083  Sum_probs=68.5

Q ss_pred             eeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhc
Q psy3651         156 RKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNV  235 (334)
Q Consensus       156 ~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~  235 (334)
                      +..|+......+...+.++.+.|++|+..+-+.-..--.-++++|+|+|..+=...--. .......|.+.+...     
T Consensus        86 rg~ti~~~~~~~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~-~~~~QT~e~l~l~~~-----  159 (245)
T d1r5ba3          86 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGF-ERGGQTREHAVLART-----  159 (245)
T ss_dssp             --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTT-STTCCHHHHHHHHHH-----
T ss_pred             cCccccccccccccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCcc-ccccchHHHHHHHHH-----
Confidence            34455555556677888999999999999888888778889999999999872100000 000133343333222     


Q ss_pred             CCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHH
Q psy3651         236 IFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKI  314 (334)
Q Consensus       236 ~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~  314 (334)
                       +.-.+++++.||+|+.....  ....              ++++.+-+...+..+... ....+.+..+||++|+||.+
T Consensus       160 -~~i~~iiv~iNKmD~~~~~~--~e~~--------------~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~  222 (245)
T d1r5ba3         160 -QGINHLVVVINKMDEPSVQW--SEER--------------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD  222 (245)
T ss_dssp             -TTCSSEEEEEECTTSTTCSS--CHHH--------------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred             -cCCCeEEEEEEcCCCCccch--hHHH--------------HHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCccc
Confidence             12235889999999854321  1111              112222222222332211 11357889999999999976


Q ss_pred             HHH
Q psy3651         315 VFN  317 (334)
Q Consensus       315 vf~  317 (334)
                      .++
T Consensus       223 ~~~  225 (245)
T d1r5ba3         223 RVD  225 (245)
T ss_dssp             CCC
T ss_pred             chh
Confidence            543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=2.9e-05  Score=67.91  Aligned_cols=89  Identities=16%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             eeeeecceeEEEEEeeCcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhccc--ccccHHHHHHHHHHHH
Q psy3651         155 ARKATKGITEFTIVISNIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDR--RTNRLHESRNIFDTII  232 (334)
Q Consensus       155 ~~~~T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~--~~nrl~esl~lf~~i~  232 (334)
                      .|.-|+......|...+.++.+.|+.|+..+-+-+..-..-+|++|+|+|.++=.   .|..  ......+.+.+.+.  
T Consensus        67 ~rGiTi~~~~~~~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~---~e~g~~~~~QT~eh~~~~~~--  141 (239)
T d1f60a3          67 ERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE---FEAGISKDGQTREHALLAFT--  141 (239)
T ss_dssp             HTTCCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH---HHHHTCTTSHHHHHHHHHHH--
T ss_pred             cceeccccceeEeccCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCc---cccccCchHhHHHHHHHHHH--
Confidence            3445666667788888999999999999999988888888999999999988610   0000  00112222222211  


Q ss_pred             hhcCCCCC-cEEEEEeCCCcch
Q psy3651         233 NNVIFRNV-SFILFLNKTDLLA  253 (334)
Q Consensus       233 ~~~~~~~~-piiL~lNK~Dl~~  253 (334)
                           -++ ++|++.||+|+..
T Consensus       142 -----~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3         142 -----LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             -----TTCCEEEEEEECGGGGT
T ss_pred             -----cCCCeEEEEEECCCCCC
Confidence                 234 5899999999754

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00093  Score=53.98  Aligned_cols=110  Identities=16%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             eCcceeeeecCCcccc---------cccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCC
Q psy3651         170 SNIPFLFVDVGGQRSQ---------RRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNV  240 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~---------r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~  240 (334)
                      +...+..||+.|....         .+....+...++.++++.|.++.          .  .....++..+..    ...
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----------~--~~~~~~~~~l~~----~~~  114 (179)
T d1egaa1          51 GAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRW----------T--PDDEMVLNKLRE----GKA  114 (179)
T ss_dssp             TTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCC----------C--HHHHHHHHHHHS----SSS
T ss_pred             CCceeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCcc----------c--hhHHHHHHHhhh----ccC
Confidence            4455666777765431         11222334578888999998764          1  111222223322    456


Q ss_pred             cEEEEEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         241 SFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       241 piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      |+++++||.|....+.  .   +..                 .+....     ..-....++.+||++++||++++++|.
T Consensus       115 ~~i~v~~k~d~~~~~~--~---~~~-----------------~~~~~~-----~~~~~~~~~~vSA~~g~gi~~L~~~i~  167 (179)
T d1egaa1         115 PVILAVNKVDNVQEKA--D---LLP-----------------HLQFLA-----SQMNFLDIVPISAETGLNVDTIAAIVR  167 (179)
T ss_dssp             CEEEEEESTTTCCCHH--H---HHH-----------------HHHHHH-----TTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred             ceeeeeeeeeccchhh--h---hhh-----------------Hhhhhh-----hhcCCCCEEEEeCcCCCCHHHHHHHHH
Confidence            8999999999876542  1   111                 111110     111335688999999999999998876


Q ss_pred             HH
Q psy3651         321 NT  322 (334)
Q Consensus       321 ~~  322 (334)
                      +.
T Consensus       168 ~~  169 (179)
T d1egaa1         168 KH  169 (179)
T ss_dssp             TT
T ss_pred             Hh
Confidence            53

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.00012  Score=67.31  Aligned_cols=69  Identities=12%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.++||+|+..+-.--....+-+|++|+|||..+           .-.......++....    .+.|++||+||+|
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~e-----------Gv~~qT~~~~~~a~~----~~~p~i~viNKiD  159 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIE-----------GVCVQTETVLRQALG----ERIKPVVVINKVD  159 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTT-----------BSCHHHHHHHHHHHH----TTCEEEEEEECHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEeccc-----------CcchhHHHHHHHHHH----cCCCeEEEEECcc
Confidence            4669999999999998888888889999999999999           677788888888776    5689999999999


Q ss_pred             cchh
Q psy3651         251 LLAE  254 (334)
Q Consensus       251 l~~e  254 (334)
                      ....
T Consensus       160 r~~~  163 (341)
T d1n0ua2         160 RALL  163 (341)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            7654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0021  Score=51.73  Aligned_cols=89  Identities=11%  Similarity=0.178  Sum_probs=52.4

Q ss_pred             CCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCCC
Q psy3651         195 SVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGDP  274 (334)
Q Consensus       195 ~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~  274 (334)
                      .+..++++.+...           .........+.....    ...++++++||.|+....-   .   .          
T Consensus        98 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~---~---~----------  146 (188)
T d1puia_          98 SLQGLVVLMDIRH-----------PLKDLDQQMIEWAVD----SNIAVLVLLTKADKLASGA---R---K----------  146 (188)
T ss_dssp             TEEEEEEEEETTS-----------CCCHHHHHHHHHHHH----TTCCEEEEEECGGGSCHHH---H---H----------
T ss_pred             heeEEEEeecccc-----------cchhHHHHHHHHhhh----ccccccchhhhhhccCHHH---H---H----------
Confidence            3445555555554           233444555555544    3568999999999765311   1   0          


Q ss_pred             ccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHH
Q psy3651         275 QDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNT  322 (334)
Q Consensus       275 ~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~  322 (334)
                          ...+.+.++....    .....++.|||++|.||+++++.|.+.
T Consensus       147 ----~~~~~~~~~l~~~----~~~~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         147 ----AQLNMVREAVLAF----NGDVQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             ----HHHHHHHHHHGGG----CSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhh----CCCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence                1111222222221    234678999999999999999887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.0054  Score=52.51  Aligned_cols=87  Identities=15%  Similarity=0.082  Sum_probs=52.0

Q ss_pred             ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCC
Q psy3651         193 FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEG  272 (334)
Q Consensus       193 f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g  272 (334)
                      -.|+|.+++|+++.+.+-      +.+.++..+-..       +..+++.+|++||+||..+.-   ...+..       
T Consensus         8 vANiD~vliV~s~~~P~~------~~~~ldR~Lv~a-------~~~~i~pvIvlnK~DL~~~~~---~~~~~~-------   64 (225)
T d1u0la2           8 VANVDQVILVVTVKMPET------STYIIDKFLVLA-------EKNELETVMVINKMDLYDEDD---LRKVRE-------   64 (225)
T ss_dssp             EESCCEEEEEECSSTTCC------CHHHHHHHHHHH-------HHTTCEEEEEECCGGGCCHHH---HHHHHH-------
T ss_pred             cccCCEEEEEEeCCCCCC------CHHHHHHHHHHH-------HHcCCCEEEEEeCcccCCHHH---HHHHHH-------
Confidence            368999999999876421      112333322221       226789999999999965421   001111       


Q ss_pred             CCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         273 DPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       273 ~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                                    .+.. .   ...+.++.+||+++.+++.+-..+.
T Consensus        65 --------------~~~~-~---~~~~~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          65 --------------LEEI-Y---SGLYPIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             --------------HHHH-H---TTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             --------------hhcc-c---ccceeEEEeccccchhHhhHHHHhc
Confidence                          1010 0   1235678999999999988876653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.07  E-value=0.002  Score=56.60  Aligned_cols=89  Identities=16%  Similarity=0.210  Sum_probs=55.7

Q ss_pred             cccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCC
Q psy3651         190 FQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPE  269 (334)
Q Consensus       190 ~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~  269 (334)
                      ....+.+|.||+|+|.-+.-..      .|.      .+++++     ++.|+|||+||+||.....   ....      
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss------~~~------~l~~~~-----~~Kp~IlVlNK~DLv~~~~---~~~w------   63 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSS------RNP------MIEDIL-----KNKPRIMLLNKADKADAAV---TQQW------   63 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTT------SCH------HHHHHC-----SSSCEEEEEECGGGSCHHH---HHHH------
T ss_pred             HHHHHhCCEEEEEEECCCCCCC------CCH------HHHHHH-----cCCCeEEEEECccCCchHH---HHHH------
Confidence            3457899999999998764110      021      223332     4679999999999865432   1111      


Q ss_pred             CCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHHHHHHH
Q psy3651         270 FEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVKNTILH  325 (334)
Q Consensus       270 y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~~~I~~  325 (334)
                                     .+.|..      ......++||+++.++..+...+.+.+.+
T Consensus        64 ---------------~~~f~~------~~~~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          64 ---------------KEHFEN------QGIRSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             ---------------HHHHHT------TTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             ---------------HHHHHh------cCCccceeecccCCCccccchhhhhhhhh
Confidence                           122221      23446789999998888887777665543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.01  E-value=0.00065  Score=57.57  Aligned_cols=133  Identities=15%  Similarity=0.150  Sum_probs=66.1

Q ss_pred             ceeeeecCCcccccc--cccc-cc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q psy3651         173 PFLFVDVGGQRSQRR--KWFQ-CF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLN  247 (334)
Q Consensus       173 ~~~i~DvgGq~~~r~--kw~~-~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lN  247 (334)
                      .+.+.|++|+...-.  .+.. ..  ...+.+++++|...-.+.        ....+..+.......+  -..|.++++|
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~--------~~~~~~~l~~~~~~~~--~~~~~ivvin  165 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKP--------NDYCFVRFFALLIDLR--LGATTIPALN  165 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSH--------HHHHHHHHHHHHHHHH--HTSCEEEEEC
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCc--------hhHhhHHHHHHHHHHH--hCCCceeeee
Confidence            456789999976422  1111 11  245688999997754221        1122222222222111  3578999999


Q ss_pred             CCCcchhhhccccchhhhhCCCC-------CCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHHH
Q psy3651         248 KTDLLAEKLRTSKTSIAEHFPEF-------EGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAVK  320 (334)
Q Consensus       248 K~Dl~~eki~~~~~~l~~~Fp~y-------~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v~  320 (334)
                      |+|+....-   ...+..+....       ...+.   ............+.. ....+.++.+||++++|+++++..+.
T Consensus       166 K~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~v~vSa~~geGi~~L~~~l~  238 (244)
T d1yrba1         166 KVDLLSEEE---KERHRKYFEDIDYLTARLKLDPS---MQGLMAYKMCSMMTE-VLPPVRVLYLSAKTREGFEDLETLAY  238 (244)
T ss_dssp             CGGGCCHHH---HHHHHHHHHCHHHHHHHHHHCCS---HHHHHHHHHHHHHHH-HSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccHHH---HHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHh-hCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            999876421   11111100000       00000   011122222111111 12446788999999999999998876


Q ss_pred             HH
Q psy3651         321 NT  322 (334)
Q Consensus       321 ~~  322 (334)
                      +.
T Consensus       239 e~  240 (244)
T d1yrba1         239 EH  240 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.97  E-value=0.034  Score=47.89  Aligned_cols=87  Identities=9%  Similarity=0.056  Sum_probs=53.3

Q ss_pred             ecceeEEEEEeeCcceeeeecCCcccccc-------cccccc--cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHH
Q psy3651         159 TKGITEFTIVISNIPFLFVDVGGQRSQRR-------KWFQCF--DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFD  229 (334)
Q Consensus       159 T~Gi~~~~~~~~~~~~~i~DvgGq~~~r~-------kw~~~f--~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~  229 (334)
                      |...........+..+.++||+|-.....       ....+.  .+.++++||++++...       -+..-...+..+.
T Consensus        67 T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r-------~~~~~~~~l~~l~  139 (257)
T d1h65a_          67 GPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR-------VDNLDKLVAKAIT  139 (257)
T ss_dssp             CSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCC-------CCHHHHHHHHHHH
T ss_pred             ceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCC-------CCHHHHHHHHHHH
Confidence            44455566677889999999999653211       111222  3678999999988631       0122234445555


Q ss_pred             HHHhhcCCCCCcEEEEEeCCCcchh
Q psy3651         230 TIINNVIFRNVSFILFLNKTDLLAE  254 (334)
Q Consensus       230 ~i~~~~~~~~~piiL~lNK~Dl~~e  254 (334)
                      .++....+  .++|+++||.|....
T Consensus       140 ~~fg~~~~--~~~ivv~t~~D~~~~  162 (257)
T d1h65a_         140 DSFGKGIW--NKAIVALTHAQFSPP  162 (257)
T ss_dssp             HHHCGGGG--GGEEEEEECCSCCCG
T ss_pred             HHcchhhh--hCEEEEEECcccCCc
Confidence            55533322  378999999998653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.96  E-value=0.012  Score=50.41  Aligned_cols=87  Identities=14%  Similarity=0.182  Sum_probs=50.7

Q ss_pred             cCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCcchhhhccccchhhhhCCCCCCC
Q psy3651         194 DSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTDLLAEKLRTSKTSIAEHFPEFEGD  273 (334)
Q Consensus       194 ~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~  273 (334)
                      .|+|.+++|+++.+++-      +..+++..+-.       -+..+++.+|++||+||..+.-  ....+          
T Consensus         9 ANiD~~~iV~s~~~P~~------~~~~idR~Lv~-------a~~~~i~pvIvlnK~DL~~~~~--~~~~~----------   63 (231)
T d1t9ha2           9 CNVDQAVLVFSAVQPSF------STALLDRFLVL-------VEANDIQPIICITKMDLIEDQD--TEDTI----------   63 (231)
T ss_dssp             ECCCEEEEEEESTTTTC------CHHHHHHHHHH-------HHTTTCEEEEEEECGGGCCCHH--HHHHH----------
T ss_pred             cccCEEEEEEECCCCCC------CHHHHHHHHHH-------HHHcCCCEEEEEecccccccHH--HHHHH----------
Confidence            68999999999876521      11233322222       1236789999999999965321  01001          


Q ss_pred             CccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecCchHHHHHHHH
Q psy3651         274 PQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDTENIKIVFNAV  319 (334)
Q Consensus       274 ~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~~nI~~vf~~v  319 (334)
                              .-+.+.|..+      .+.++.+||+++.++.++...+
T Consensus        64 --------~~~~~~y~~~------g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          64 --------QAYAEDYRNI------GYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             --------HHHHHHHHHH------TCCEEECCHHHHTTCTTTGGGG
T ss_pred             --------HHHHHHHhhc------cccceeeecCChhHHHHHHHhh
Confidence                    1112222222      3567889999888887765544

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.31  E-value=0.096  Score=48.03  Aligned_cols=126  Identities=11%  Similarity=0.108  Sum_probs=64.8

Q ss_pred             eCcceeeeecCCccccccccccc-----ccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEE
Q psy3651         170 SNIPFLFVDVGGQRSQRRKWFQC-----FDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFIL  244 (334)
Q Consensus       170 ~~~~~~i~DvgGq~~~r~kw~~~-----f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL  244 (334)
                      ++..+.+|||+|-......-..|     +..++.+|+++|. .+          .  ..-..+.+.+..    .+.|+++
T Consensus       105 ~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~-~~----------~--~~d~~l~~~l~~----~~k~~~~  167 (400)
T d1tq4a_         105 NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT-RF----------K--KNDIDIAKAISM----MKKEFYF  167 (400)
T ss_dssp             SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESS-CC----------C--HHHHHHHHHHHH----TTCEEEE
T ss_pred             CCCeEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCC-CC----------C--HHHHHHHHHHHH----cCCCEEE
Confidence            34568899999987543322222     4567777777652 22          1  122344455443    3679999


Q ss_pred             EEeCCCcchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccCCCCCeEEEEEeeecC--chHHHHHHHHHHH
Q psy3651         245 FLNKTDLLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRDEKKPLFHHFTTAVDT--ENIKIVFNAVKNT  322 (334)
Q Consensus       245 ~lNK~Dl~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~~~~~i~~~~tsA~d~--~nI~~vf~~v~~~  322 (334)
                      |+||+|......   ..+....|    ......+..++.+.+.+....-   ..-.++.+|..+.  .++..+.+++.+.
T Consensus       168 V~nK~D~~~~~~---~~~~~~~~----~~e~~l~~ir~~~~~~l~~~~~---~~~~vflvS~~~~~~~d~~~L~~~l~~~  237 (400)
T d1tq4a_         168 VRTKVDSDITNE---ADGEPQTF----DKEKVLQDIRLNCVNTFRENGI---AEPPIFLLSNKNVCHYDFPVLMDKLISD  237 (400)
T ss_dssp             EECCHHHHHHHH---HTTCCTTC----CHHHHHHHHHHHHHHHHHHTTC---SSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred             EEeCcccccchh---hhcccccc----cHHHHHHHHHHHHHHHHHHcCC---CCCCEEEecCCcccccCHHHHHHHHHHH
Confidence            999999643211   00001111    1111223333444444433221   1223566776643  4777776666554

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=0.61  Score=41.30  Aligned_cols=111  Identities=12%  Similarity=0.129  Sum_probs=58.0

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      +..+.+.+|.|.--.-   ......+|.+++|.+...-|..-       -+..      -++.      .+=++|.||.|
T Consensus       146 g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq-------~~k~------gi~e------~aDi~VvNKaD  203 (327)
T d2p67a1         146 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQ-------GIKK------GLME------VADLIVINKDD  203 (327)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------C-------CCCH------HHHH------HCSEEEECCCC
T ss_pred             CCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhh-------hhch------hhhc------cccEEEEEeec
Confidence            3556677776543211   12456799999998877664321       1111      1121      12378889999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC-CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD-EKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~-~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +.....  ....+.+                 | ...-.-+... .....+++.|||++++||.++++.|.+..
T Consensus       204 ~~~~~~--~~~~~~~-----------------~-~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         204 GDNHTN--VAIARHM-----------------Y-ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             TTCHHH--HHHHHHH-----------------H-HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             ccchHH--HHHHHHH-----------------H-HHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            865321  1111111                 1 1110111111 12445789999999999999999887643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=83.20  E-value=0.93  Score=39.94  Aligned_cols=111  Identities=11%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             CcceeeeecCCcccccccccccccCCCeEEEEEeCCCccchhhcccccccHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q psy3651         171 NIPFLFVDVGGQRSQRRKWFQCFDSVTSILFLVSSSEYDQTLVEDRRTNRLHESRNIFDTIINNVIFRNVSFILFLNKTD  250 (334)
Q Consensus       171 ~~~~~i~DvgGq~~~r~kw~~~f~~v~~iIfv~dls~~d~~l~ed~~~nrl~esl~lf~~i~~~~~~~~~piiL~lNK~D  250 (334)
                      ++.+-|+.|.|--.-.   ......+|..|+|.....=|..-.             ....++.      .+=+++.||.|
T Consensus       143 g~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~-------------~k~gilE------~aDi~vvNKaD  200 (323)
T d2qm8a1         143 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQG-------------IKKGIFE------LADMIAVNKAD  200 (323)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC-------------------CCTTHHH------HCSEEEEECCS
T ss_pred             CCCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhh-------------hhhhHhh------hhheeeEeccc
Confidence            4566777776553221   123456899999998877532100             0001111      23389999999


Q ss_pred             cchhhhccccchhhhhCCCCCCCCccHHHHHHHHHHHHHhhccC--CCCCeEEEEEeeecCchHHHHHHHHHHHH
Q psy3651         251 LLAEKLRTSKTSIAEHFPEFEGDPQDMQAVQTFLLNYFKAVKRD--EKKPLFHHFTTAVDTENIKIVFNAVKNTI  323 (334)
Q Consensus       251 l~~eki~~~~~~l~~~Fp~y~g~~~~~~~~~~fi~~~F~~l~~~--~~~~i~~~~tsA~d~~nI~~vf~~v~~~I  323 (334)
                      +....-  ....+.                  .....++.+...  .....++..|||++++||.+++++|.+..
T Consensus       201 ~~~~~~--~~~~~~------------------~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         201 DGDGER--RASAAA------------------SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             TTCCHH--HHHHHH------------------HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cccchH--HHHHHH------------------HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            754210  000010                  001111222111  12445789999999999999999997643