Psyllid ID: psy3658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHcccccccccccEEEEEEEccEEEEEEccccccHHHHHHHHHHHccccEEccccEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHcccccccccHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHcccccccEccc
Coil and Loop (DISEMBL)
MSKALSTSAKRIQKELAeitldpppnyvllenwnplgvvgiisafnfpvavygwnaaialpgwqvLGQVALVGV
Flexible Loop (DISEMBL)
MSKALSTSAKRIQKELaeitldpppnYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV
Low Complexity Region (SEG)
MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV
Disordered region (IsUnstruct)
******************ITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALV**
Disordered Region (DISOPRED)
*****ST*AKRIQKELA**********VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV
Disordered Region (DISEMBL)
**********RIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV
Disordered Region (DISPRO)
*********KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVALVGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
P46562	531	Putative aldehyde dehydro	yes	N/A	0.486	0.067	0.777	8e-11
P83401	509	Putative aldehyde dehydro	yes	N/A	0.581	0.084	0.617	1e-10
Q41247	494	Aldehyde dehydrogenase fa	N/A	N/A	0.486	0.072	0.722	2e-10
Q64057	539	Alpha-aminoadipic semiald	yes	N/A	0.581	0.079	0.638	2e-10
Q9SYG7	508	Aldehyde dehydrogenase fa	yes	N/A	0.486	0.070	0.722	3e-10
Q2KJC9	539	Alpha-aminoadipic semiald	yes	N/A	0.486	0.066	0.722	5e-10
Q9DBF1	539	Alpha-aminoadipic semiald	yes	N/A	0.581	0.079	0.638	7e-10
P49419	539	Alpha-aminoadipic semiald	yes	N/A	0.554	0.076	0.622	2e-09
P25795	508	Aldehyde dehydrogenase fa	N/A	N/A	0.513	0.074	0.657	2e-09
Q9ZPB7	508	Aldehyde dehydrogenase fa	N/A	N/A	0.486	0.070	0.666	2e-09

>sp|P46562|AL7A1_CAEEL Putative aldehyde dehydrogenase family 7 member A1 homolog OS=Caenorhabditis elegans GN=alh-9 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + LLE WNPLGVVG+ISAFNFP AVYGWN A+AL
Sbjct: 164 PGHALLEQWNPLGVVGVISAFNFPCAVYGWNNALAL 199

Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|P83401|AL7A1_DICDI Putative aldehyde dehydrogenase family 7 member A1 homolog OS=Dictyostelium discoideum GN=DDB_G0276821 PE=3 SV=2

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 37/47 (78%), Gaps = 4/47 (8%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
           PN++L+E WNPLG+VGII+AFNFP AV GWNAAI++    + G V L
Sbjct: 143 PNHILMETWNPLGLVGIITAFNFPCAVLGWNAAISM----ICGNVQL 185

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q41247|AL7A1_BRANA Aldehyde dehydrogenase family 7 member A1 OS=Brassica napus GN=BTG-26 PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           PN+++LE WNPLG+VG+I+AFNFP AV GWNA IAL
Sbjct: 147 PNHMMLEMWNPLGIVGVITAFNFPCAVLGWNACIAL 182

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q64057|AL7A1_RAT Alpha-aminoadipic semialdehyde dehydrogenase OS=Rattus norvegicus GN=Aldh7a1 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 4/47 (8%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
           P + L+E WNPLG+VGII+AFNFPVAV+GWN AIAL    + G V L
Sbjct: 174 PGHALMEQWNPLGLVGIITAFNFPVAVFGWNNAIAL----ITGNVCL 216

Multifunctional enzyme mediating important protective effects. Metabolizes betaine aldehyde to betaine, an important cellular osmolyte and methyl donor. Protects cells from oxidative stress by metabolizing a number of lipid peroxidation-derived aldehydes. Involved in lysine catabolism.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SYG7|AL7B4_ARATH Aldehyde dehydrogenase family 7 member B4 OS=Arabidopsis thaliana GN=ALDH7B4 PE=2 SV=3

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           PN+++LE WNPLG+VG+I+AFNFP AV GWNA IAL
Sbjct: 144 PNHMMLEMWNPLGIVGVITAFNFPCAVLGWNACIAL 179

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q2KJC9|AL7A1_BOVIN Alpha-aminoadipic semialdehyde dehydrogenase OS=Bos taurus GN=ALDH7A1 PE=2 SV=4

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+
Sbjct: 174 PGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM 209

Multifunctional enzyme mediating important protective effects. Metabolizes betaine aldehyde to betaine, an important cellular osmolyte and methyl donor. Protects cells from oxidative stress by metabolizing a number of lipid peroxidation-derived aldehydes. Involved in lysine catabolism.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9DBF1|AL7A1_MOUSE Alpha-aminoadipic semialdehyde dehydrogenase OS=Mus musculus GN=Aldh7a1 PE=1 SV=4

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 4/47 (8%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
           P + L+E WNPLG+VGII+AFNFPVAV+GWN AIAL    + G V L
Sbjct: 174 PGHALIEMWNPLGLVGIITAFNFPVAVFGWNNAIAL----ITGNVCL 216

Multifunctional enzyme mediating important protective effects. Metabolizes betaine aldehyde to betaine, an important cellular osmolyte and methyl donor. Protects cells from oxidative stress by metabolizing a number of lipid peroxidation-derived aldehydes. Involved in lysine catabolism.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P49419|AL7A1_HUMAN Alpha-aminoadipic semialdehyde dehydrogenase OS=Homo sapiens GN=ALDH7A1 PE=1 SV=5

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 4/45 (8%)

Query: 27  YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
           + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+    + G V L
Sbjct: 176 HALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM----ICGNVCL 216

Multifunctional enzyme mediating important protective effects. Metabolizes betaine aldehyde to betaine, an important cellular osmolyte and methyl donor. Protects cells from oxidative stress by metabolizing a number of lipid peroxidation-derived aldehydes. Involved in lysine catabolism.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P25795|AL7A1_PEA Aldehyde dehydrogenase family 7 member A1 OS=Pisum sativum PE=1 SV=3

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPG 62
           P +++ E WNPLG+VG+I+AFNFP AV GWNA IAL G
Sbjct: 144 PEHMMFEVWNPLGIVGVITAFNFPCAVLGWNACIALVG 181

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9ZPB7|AL7A1_MALDO Aldehyde dehydrogenase family 7 member A1 OS=Malus domestica PE=1 SV=3

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 31/36 (86%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P++++ E WNPLG+VG+I+AFNFP AV GWNA IAL
Sbjct: 144 PDHMMFEVWNPLGIVGVITAFNFPCAVLGWNACIAL 179

May play a role in fruit development.

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
332373112	540	unknown [Dendroctonus ponderosae]	0.486	0.066	0.805	7e-11
242010586	534	aldehyde dehydrogenase, putative [Pedicu	0.486	0.067	0.888	1e-10
281203957	1299	aldehyde dehydrogenase [Polysphondylium	0.486	0.027	0.805	1e-10
193599010	535	PREDICTED: putative aldehyde dehydrogena	0.486	0.067	0.777	3e-10
91095113	516	PREDICTED: similar to aldehyde dehydroge	0.486	0.069	0.777	3e-10
324507573	613	Aldehyde dehydrogenase family 7 member A	0.486	0.058	0.777	4e-10
291234994	427	PREDICTED: aldehyde dehydrogenase 1 fami	0.540	0.093	0.775	5e-10
241601186	561	aldehyde dehydrogenase, putative [Ixodes	0.486	0.064	0.833	5e-10
198425453	539	PREDICTED: similar to aldehyde dehydroge	0.486	0.066	0.805	6e-10
21914366	514	aldehyde dehydrogenase [Steinernema felt	0.486	0.070	0.777	7e-10

>gi|332373112|gb|AEE61697.1| unknown [Dendroctonus ponderosae]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 35/36 (97%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P +VL+ENWNPLGV+G+ISAFNFPVAVYGWN+AIA+
Sbjct: 173 PGHVLMENWNPLGVIGVISAFNFPVAVYGWNSAIAM 208

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010586|ref|XP_002426046.1| aldehyde dehydrogenase, putative [Pediculus humanus corporis] gi|212510056|gb|EEB13308.1| aldehyde dehydrogenase, putative [Pediculus humanus corporis]

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/36 (88%), Positives = 34/36 (94%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P +VLLE WNPLGVVG+ISAFNFPVAVYGWNAAIAL
Sbjct: 167 PGHVLLEVWNPLGVVGVISAFNFPVAVYGWNAAIAL 202

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281203957|gb|EFA78153.1| aldehyde dehydrogenase [Polysphondylium pallidum PN500]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/36 (80%), Positives = 33/36 (91%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P +VLLENWNPLG+VGII+AFNFP AV GWNAAI+L
Sbjct: 933 PGHVLLENWNPLGLVGIITAFNFPCAVLGWNAAISL 968

Source: Polysphondylium pallidum PN500

Species: Polysphondylium pallidum

Genus: Polysphondylium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|193599010|ref|XP_001951859.1| PREDICTED: putative aldehyde dehydrogenase family 7 member A1 homolog [Acyrthosiphon pisum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 35/36 (97%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           PN+++LE WNPLG+VGIISAFNFPVAVYGWN+AI++
Sbjct: 168 PNHIMLEQWNPLGLVGIISAFNFPVAVYGWNSAISM 203

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91095113|ref|XP_969882.1| PREDICTED: similar to aldehyde dehydrogenase 7 family, member A1 [Tribolium castaneum] gi|270015550|gb|EFA11998.1| hypothetical protein TcasGA2_TC005191 [Tribolium castaneum]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 34/36 (94%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P +VL+E WNPLGVVG+ISAFNFP+AVYGWN+AIA+
Sbjct: 149 PGHVLMEKWNPLGVVGVISAFNFPIAVYGWNSAIAM 184

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324507573|gb|ADY43210.1| Aldehyde dehydrogenase family 7 member A1 [Ascaris suum]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + LLE WNPLGVVG+ISAFNFP AVYGWN A+AL
Sbjct: 165 PGHALLEQWNPLGVVGVISAFNFPCAVYGWNNALAL 200

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|291234994|ref|XP_002737431.1| PREDICTED: aldehyde dehydrogenase 1 family, member L1-like [Saccoglossus kowalevskii]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 34/40 (85%)

Query: 21  LDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           L   P + L+E WNPLGVVGII+AFNFPVAVYGWNAAIAL
Sbjct: 129 LRDGPGHALIEQWNPLGVVGIITAFNFPVAVYGWNAAIAL 168

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|241601186|ref|XP_002405253.1| aldehyde dehydrogenase, putative [Ixodes scapularis] gi|215502496|gb|EEC11990.1| aldehyde dehydrogenase, putative [Ixodes scapularis]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + LLE WNPLGVVG+ISAFNFPVAVYGWN+AIAL
Sbjct: 196 PGHALLEAWNPLGVVGVISAFNFPVAVYGWNSAIAL 231

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198425453|ref|XP_002126064.1| PREDICTED: similar to aldehyde dehydrogenase 7 family, member A1 [Ciona intestinalis]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 33/36 (91%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + L+ENWNP+GVVGII+AFNFPVAVYGWN AIAL
Sbjct: 173 PGHALIENWNPVGVVGIITAFNFPVAVYGWNTAIAL 208

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|21914366|gb|AAM81354.1|AF522285_1 aldehyde dehydrogenase [Steinernema feltiae]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P +VLLE WNPLGVVG+ISAFNFP AVYGWN+A+A+
Sbjct: 147 PGHVLLEQWNPLGVVGVISAFNFPCAVYGWNSALAM 182

Source: Steinernema feltiae

Species: Steinernema feltiae

Genus: Steinernema

Family: Steinernematidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
ZFIN|ZDB-GENE-030131-6129	541	aldh7a1 "aldehyde dehydrogenas	0.486	0.066	0.777	8e-11
WB|WBGene00000115	531	alh-9 [Caenorhabditis elegans	0.486	0.067	0.777	9.9e-11
UNIPROTKB|P46562	531	alh-9 "Putative aldehyde dehyd	0.486	0.067	0.777	9.9e-11
UNIPROTKB|H0YHM6	240	ALDH7A1 "Alpha-aminoadipic sem	0.554	0.170	0.622	1.8e-10
DICTYBASE|DDB_G0276821	509	DDB_G0276821 "aldehyde dehydro	0.486	0.070	0.722	1.9e-10
RGD|1308614	539	Aldh7a1 "aldehyde dehydrogenas	0.581	0.079	0.638	2.1e-10
UNIPROTKB|F1RKM1	438	ALDH7A1 "Uncharacterized prote	0.486	0.082	0.722	2.4e-10
UNIPROTKB|J9NVL7	522	ALDH7A1 "Uncharacterized prote	0.581	0.082	0.617	2.6e-10
UNIPROTKB|E2RQ99	539	ALDH7A1 "Uncharacterized prote	0.581	0.079	0.617	2.7e-10
UNIPROTKB|Q41247	494	BTG-26 "Aldehyde dehydrogenase	0.486	0.072	0.722	3e-10

ZFIN|ZDB-GENE-030131-6129 aldh7a1 "aldehyde dehydrogenase 7 family, member A1" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 28/36 (77%), Positives = 33/36 (91%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             P +VL+E WNP+G+VGII+AFNFPVAVYGWN AIAL
Sbjct:   176 PGHVLIEQWNPVGLVGIITAFNFPVAVYGWNNAIAL 211

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

WB|WBGene00000115 alh-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 159 (61.0 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             P + LLE WNPLGVVG+ISAFNFP AVYGWN A+AL
Sbjct:   164 PGHALLEQWNPLGVVGVISAFNFPCAVYGWNNALAL 199

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P46562 alh-9 "Putative aldehyde dehydrogenase family 7 member A1 homolog" [Caenorhabditis elegans (taxid:6239)]

 Score = 159 (61.0 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 28/36 (77%), Positives = 31/36 (86%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             P + LLE WNPLGVVG+ISAFNFP AVYGWN A+AL
Sbjct:   164 PGHALLEQWNPLGVVGVISAFNFPCAVYGWNNALAL 199

GO:0005575 "cellular_component" evidence=ND

GO:0006081 "cellular aldehyde metabolic process" evidence=ISS

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=ISS

UNIPROTKB|H0YHM6 ALDH7A1 "Alpha-aminoadipic semialdehyde dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query:    27 YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
             + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+    + G V L
Sbjct:   147 HALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM----ICGNVCL 187

GO:0016491 "oxidoreductase activity" evidence=IEA

DICTYBASE|DDB_G0276821 DDB_G0276821 "aldehyde dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 156 (60.0 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 26/36 (72%), Positives = 33/36 (91%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             PN++L+E WNPLG+VGII+AFNFP AV GWNAAI++
Sbjct:   143 PNHILMETWNPLGLVGIITAFNFPCAVLGWNAAISM 178

GO:0005615 "extracellular space" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=IEA;ISS

GO:0006081 "cellular aldehyde metabolic process" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

RGD|1308614 Aldh7a1 "aldehyde dehydrogenase 7 family, member A1" [Rattus norvegicus (taxid:10116)]

 Score = 156 (60.0 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 30/47 (63%), Positives = 36/47 (76%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
             P + L+E WNPLG+VGII+AFNFPVAV+GWN AIAL    + G V L
Sbjct:   174 PGHALMEQWNPLGLVGIITAFNFPVAVFGWNNAIAL----ITGNVCL 216

GO:0004043 "L-aminoadipate-semialdehyde dehydrogenase activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA

GO:0008802 "betaine-aldehyde dehydrogenase activity" evidence=IEA

GO:0019285 "glycine betaine biosynthetic process from choline" evidence=IEA

UNIPROTKB|F1RKM1 ALDH7A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             P + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+
Sbjct:    73 PGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM 108

GO:0005739 "mitochondrion" evidence=IEA

GO:0004043 "L-aminoadipate-semialdehyde dehydrogenase activity" evidence=IEA

UNIPROTKB|J9NVL7 ALDH7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
             P + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+    + G V L
Sbjct:   174 PGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM----ICGNVCL 216

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=IEA

UNIPROTKB|E2RQ99 ALDH7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 29/47 (61%), Positives = 36/47 (76%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
             P + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+    + G V L
Sbjct:   174 PGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM----ICGNVCL 216

GO:0005739 "mitochondrion" evidence=IEA

GO:0004043 "L-aminoadipate-semialdehyde dehydrogenase activity" evidence=IEA

UNIPROTKB|Q41247 BTG-26 "Aldehyde dehydrogenase family 7 member A1" [Brassica napus (taxid:3708)]

 Score = 154 (59.3 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query:    25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             PN+++LE WNPLG+VG+I+AFNFP AV GWNA IAL
Sbjct:   147 PNHMMLEMWNPLGIVGVITAFNFPCAVLGWNACIAL 182

GO:0004029 "aldehyde dehydrogenase (NAD) activity" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0006081 "cellular aldehyde metabolic process" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KJC9	AL7A1_BOVIN	1, ., 2, ., 1, ., 8	0.7222	0.4864	0.0667	yes	N/A
P46562	AL7A1_CAEEL	1, ., 2, ., 1, ., 3	0.7777	0.4864	0.0677	yes	N/A
Q9SYG7	AL7B4_ARATH	1, ., 2, ., 1, ., 3	0.7222	0.4864	0.0708	yes	N/A
P49419	AL7A1_HUMAN	1, ., 2, ., 1, ., 8	0.6222	0.5540	0.0760	yes	N/A
Q9DBF1	AL7A1_MOUSE	1, ., 2, ., 1, ., 8	0.6382	0.5810	0.0797	yes	N/A
Q64057	AL7A1_RAT	1, ., 2, ., 1, ., 8	0.6382	0.5810	0.0797	yes	N/A
P83401	AL7A1_DICDI	1, ., 2, ., 1, ., 3	0.6170	0.5810	0.0844	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
cd07130	474	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-amin	6e-21
cd07086	478	cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha	5e-19
PLN02315	508	PLN02315, PLN02315, aldehyde dehydrogenase family	3e-15
cd06534	367	cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehyd	5e-09
cd07078	432	cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrog	2e-08
pfam00171	459	pfam00171, Aldedh, Aldehyde dehydrogenase family	3e-07
cd07097	473	cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+	2e-06
COG1012	472	COG1012, PutA, NAD-dependent aldehyde dehydrogenas	8e-06
cd07131	478	cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candi	3e-05
cd07085	478	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyd	4e-05
cd07133	434	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehyd	3e-04
cd07104	431	cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)	0.001
cd07151	465	cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxyb	0.002
cd07090	457	cd07090, ALDH_F9_TMBADH, NAD+-dependent 4-trimethy	0.003
cd07093	455	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogen	0.003
TIGR03216	481	TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semia	0.003
cd07152	443	cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde	0.004

>gnl|CDD|143448 cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B

 Score = 83.8 bits (208), Expect = 6e-21
 Identities = 27/36 (75%), Positives = 33/36 (91%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + ++E WNPLGVVG+I+AFNFPVAV+GWNAAIAL
Sbjct: 122 PGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIAL 157

Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer. Length = 474

>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins

 Score = 78.4 bits (194), Expect = 5e-19
 Identities = 28/36 (77%), Positives = 32/36 (88%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + L+E WNPLGVVG+I+AFNFPVAV GWNAAIAL
Sbjct: 123 PGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIAL 158

ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105). Length = 478

>gnl|CDD|177949 PLN02315, PLN02315, aldehyde dehydrogenase family 7 member

 Score = 67.6 bits (165), Expect = 3e-15
 Identities = 25/36 (69%), Positives = 32/36 (88%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           PN++++E WNPLG+VG+I+AFNFP AV GWNA IAL
Sbjct: 144 PNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIAL 179

Length = 508

>gnl|CDD|143395 cd06534, ALDH-SF, NAD(P)+-dependent aldehyde dehydrogenase superfamily

 Score = 50.3 bits (121), Expect = 5e-09
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 8   SAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           +A    K        P P         PLGVVG+I+ +NFP+ +  W  A AL
Sbjct: 65  AAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPAL 117

The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-L) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. The ALDH-like group is represented by such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group. Length = 367

>gnl|CDD|143397 cd07078, ALDH, NAD(P)+ dependent aldehyde dehydrogenase family

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 9   AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           A   ++   E+   P P  + +    PLGVVG I+ +NFP+ +  W  A AL
Sbjct: 70  AGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPAL 121

The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer to the cofactor and formation of a thioacylenzyme intermediate. Hydrolysis of the thioacylenzyme and release of the carboxylic acid product occurs, and in most cases, the reduced cofactor dissociates from the enzyme. The evolutionary phylogenetic tree of ALDHs appears to have an initial bifurcation between what has been characterized as the classical aldehyde dehydrogenases, the ALDH family (ALDH) and extended family members or aldehyde dehydrogenase-like (ALDH-like) proteins. The ALDH proteins are represented by enzymes which share a number of highly conserved residues necessary for catalysis and cofactor binding and they include such proteins as retinal dehydrogenase, 10-formyltetrahydrofolate dehydrogenase, non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase, delta(1)-pyrroline-5-carboxylate dehydrogenases, alpha-ketoglutaric semialdehyde dehydrogenase, alpha-aminoadipic semialdehyde dehydrogenase, coniferyl aldehyde dehydrogenase and succinate-semialdehyde dehydrogenase. Included in this larger group are all human, Arabidopsis, Tortula, fungal, protozoan, and Drosophila ALDHs identified in families ALDH1 through ALDH22 with the exception of families ALDH18, ALDH19, and ALDH20 which are present in the ALDH-like group. Length = 432

>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 18/47 (38%), Positives = 25/47 (53%)

Query: 14  KELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           ++L   TL   P  +      PLGVVG I+ +NFP+ +  W  A AL
Sbjct: 105 RKLEGETLPSDPGVLAYTRREPLGVVGAITPWNFPLLLAAWKIAPAL 151

This family of dehydrogenases act on aldehyde substrates. Members use NADP as a cofactor. The family includes the following members: The prototypical members are the aldehyde dehydrogenases EC:1.2.1.3. Succinate-semialdehyde dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28. Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27. Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9. Delta-1-pyrroline-5-carboxylate dehydrogenase EC: 1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10. Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41. This family also includes omega crystallin, an eye lens protein from squid and octopus that has little aldehyde dehydrogenase activity. Length = 459

>gnl|CDD|143415 cd07097, ALDH_KGSADH-YcbD, Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 34  NPLGVVGIISAFNFPVAVYGWNAAIAL 60
            PLGVVG+I+ +NFP+A+  W  A AL
Sbjct: 134 EPLGVVGLITPWNFPIAIPAWKIAPAL 160

Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group. Length = 473

>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy production and conversion]

 Score = 41.1 bits (97), Expect = 8e-06
 Identities = 18/49 (36%), Positives = 24/49 (48%)

Query: 14  KELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPG 62
           + L   T+        L    PLGVVG I+ +NFP+A+  W  A AL  
Sbjct: 112 RRLEGETIPTDKGSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAA 160

Length = 472

>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 35  PLGVVGIISAFNFPVAVYGWNAAIAL 60
           P+GVV +I+ +NFPVA+  W    AL
Sbjct: 135 PIGVVALITPWNFPVAIPSWKIFPAL 160

Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD. Length = 478

>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2

 Score = 39.0 bits (92), Expect = 4e-05
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 35  PLGVVGIISAFNFPVAVYGWNAAIAL 60
           PLGVV  I+ FNFP  +  W   +A+
Sbjct: 136 PLGVVAGITPFNFPAMIPLWMFPMAI 161

Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD. Length = 478

>gnl|CDD|143451 cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like

 Score = 36.3 bits (85), Expect = 3e-04
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 35  PLGVVGIISAFNFPV 49
           PLGVVGII  +N+P+
Sbjct: 101 PLGVVGIIVPWNYPL 115

Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD. Length = 434

>gnl|CDD|143422 cd07104, ALDH_BenzADH-like, ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins

 Score = 34.8 bits (81), Expect = 0.001
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 35  PLGVVGIISAFNFPV 49
           PLGVVG+IS FNFP+
Sbjct: 98  PLGVVGVISPFNFPL 112

ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences. Length = 431

>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 11/14 (78%), Positives = 13/14 (92%)

Query: 35  PLGVVGIISAFNFP 48
           PLGVVG+IS +NFP
Sbjct: 130 PLGVVGVISPWNFP 143

NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD. Length = 465

>gnl|CDD|143409 cd07090, ALDH_F9_TMBADH, NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 35  PLGVVGIISAFNFPVAVYGWNAAIAL 60
           PLGV   I A+N+P+ +  W +A AL
Sbjct: 116 PLGVCAGIGAWNYPIQIASWKSAPAL 141

NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis. Length = 457

>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like

 Score = 33.7 bits (78), Expect = 0.003
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 20  TLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           +       +      P+GV G+I+ +N P+ +  W  A AL
Sbjct: 102 SYPQDGGALNYVLRQPVGVAGLITPWNLPLMLLTWKIAPAL 142

In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone. Length = 455

>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde dehydrogenase

 Score = 33.5 bits (77), Expect = 0.003
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 34  NPLGVVGIISAFNFPVAVYGWNAAIAL 60
            PLGVVG+IS +N P+ +  W    AL
Sbjct: 138 KPLGVVGVISPWNLPLLLMTWKVGPAL 164

Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation [Energy metabolism, Other]. Length = 481

>gnl|CDD|143470 cd07152, ALDH_BenzADH, NAD-dependent benzaldehyde dehydrogenase II-like

 Score = 33.4 bits (77), Expect = 0.004
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 35  PLGVVGIISAFNFPV 49
           PLGVVG+IS FNFP+
Sbjct: 110 PLGVVGVISPFNFPL 124

NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids. Length = 443

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG2450|consensus	501		99.82
KOG2451|consensus	503		99.79
COG1012	472	PutA NAD-dependent aldehyde dehydrogenases [Energy	99.74
cd07126	489	ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate de	99.68
PRK11241	482	gabD succinate-semialdehyde dehydrogenase I; Provi	99.66
PLN02419	604	methylmalonate-semialdehyde dehydrogenase [acylati	99.66
PLN02315	508	aldehyde dehydrogenase family 7 member	99.64
TIGR03374	472	ABALDH 1-pyrroline dehydrogenase. Members of this	99.64
PRK10090	409	aldehyde dehydrogenase A; Provisional	99.64
cd07117	475	ALDH_StaphAldA1 Uncharacterized Staphylococcus aur	99.63
cd07097	473	ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent	99.62
cd07116	479	ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependen	99.62
PLN02174	484	aldehyde dehydrogenase family 3 member H1	99.62
PLN02766	501	coniferyl-aldehyde dehydrogenase	99.62
PLN02278	498	succinic semialdehyde dehydrogenase	99.62
PRK13968	462	putative succinate semialdehyde dehydrogenase; Pro	99.61
cd07559	480	ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dep	99.61
PLN02467	503	betaine aldehyde dehydrogenase	99.61
TIGR01237	511	D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehy	99.61
PLN02466	538	aldehyde dehydrogenase family 2 member	99.61
cd07086	478	ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadip	99.61
cd07142	476	ALDH_F2BC Arabidosis aldehyde dehydrogenase family	99.61
cd07140	486	ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydroge	99.61
cd07143	481	ALDH_AldA_AN0554 Aspergillus nidulans aldehyde deh	99.6
PRK09406	457	gabD1 succinic semialdehyde dehydrogenase; Reviewe	99.6
cd07151	465	ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyd	99.6
cd07107	456	ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde	99.6
PRK09847	494	gamma-glutamyl-gamma-aminobutyraldehyde dehydrogen	99.6
cd07091	476	ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families	99.59
cd07120	455	ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde deh	99.59
PRK13252	488	betaine aldehyde dehydrogenase; Provisional	99.59
cd07118	454	ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydr	99.58
TIGR01780	448	SSADH succinate-semialdehyde dehydrogenase. SSADH	99.58
cd07124	512	ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxyl	99.58
cd07150	451	ALDH_VaniDH_like Pseudomonas putida vanillin dehyd	99.58
PRK13473	475	gamma-aminobutyraldehyde dehydrogenase; Provisiona	99.58
cd07105	432	ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-l	99.58
cd07113	477	ALDH_PADH_NahF Escherichia coli NAD+-dependent phe	99.58
cd07130	474	ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic se	99.58
cd07095	431	ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde	99.58
PRK03137	514	1-pyrroline-5-carboxylate dehydrogenase; Provision	99.58
cd07119	482	ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent be	99.58
cd07144	484	ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyd	99.58
cd07139	471	ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehy	99.57
cd07112	462	ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent	99.57
cd07085	478	ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrog	99.57
PLN02203	484	aldehyde dehydrogenase	99.57
cd07131	478	ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuen	99.57
cd07083	500	ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-	99.57
TIGR01804	467	BADH glycine betaine aldehyde dehydrogenase. Betai	99.57
cd07152	443	ALDH_BenzADH NAD-dependent benzaldehyde dehydrogen	99.57
cd07109	454	ALDH_AAS00426 Uncharacterized Saccharopolyspora sp	99.57
cd07089	459	ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric	99.57
cd07141	481	ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydro	99.56
TIGR03216	481	OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehy	99.56
PRK09457	487	astD succinylglutamic semialdehyde dehydrogenase;	99.56
cd07148	455	ALDH_RL0313 Uncharacterized ALDH ( RL0313) with si	99.56
cd07090	457	ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobuty	99.56
cd07088	468	ALDH_LactADH-AldA Escherichia coli lactaldehyde de	99.56
cd07136	449	ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydr	99.56
cd07100	429	ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succi	99.56
cd07128	513	ALDH_MaoC-N N-terminal domain of the monoamine oxi	99.56
cd07133	434	ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-l	99.55
cd07110	456	ALDH_F10_BADH Arabidopsis betaine aldehyde dehydro	99.55
cd07145	456	ALDH_LactADH_F420-Bios Methanocaldococcus jannasch	99.55
cd07114	457	ALDH_DhaS Uncharacterized Candidatus pelagibacter	99.54
cd07104	431	ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependen	99.54
TIGR03250	472	PhnAcAld_DH putative phosphonoacetaldehyde dehydro	99.54
TIGR03240	484	arg_catab_astD succinylglutamic semialdehyde dehyd	99.54
cd07137	432	ALDH_F3FHI Plant aldehyde dehydrogenase family 3 m	99.54
cd07115	453	ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxy	99.54
TIGR02278	663	PaaN-DH phenylacetic acid degradation protein paaN	99.54
cd07146	451	ALDH_PhpJ Streptomyces putative phosphonoformaldeh	99.54
cd07135	436	ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde	99.53
PTZ00381	493	aldehyde dehydrogenase family protein; Provisional	99.53
cd07092	450	ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent g	99.53
TIGR01722	477	MMSDH methylmalonic acid semialdehyde dehydrogenas	99.53
cd07108	457	ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent a	99.53
PF00171	462	Aldedh: Aldehyde dehydrogenase family; InterPro: I	99.53
cd07094	453	ALDH_F21_LactADH-like ALDH subfamily: NAD+-depende	99.53
TIGR02299	488	HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyd	99.52
cd07102	452	ALDH_EDX86601 Uncharacterized aldehyde dehydrogena	99.52
cd07081	439	ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldeh	99.52
cd07125	518	ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate d	99.52
cd07103	451	ALDH_F5_SSADH_GabD Mitochondrial succinate-semiald	99.52
cd07082	473	ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylat	99.51
cd07147	452	ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1	99.51
PRK09407	524	gabD2 succinic semialdehyde dehydrogenase; Reviewe	99.51
PRK11563	675	bifunctional aldehyde dehydrogenase/enoyl-CoA hydr	99.51
cd07132	443	ALDH_F3AB Aldehyde dehydrogenase family 3 members	99.51
cd07101	454	ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succi	99.51
TIGR02288	551	PaaN_2 phenylacetic acid degradation protein paaN.	99.5
PRK11903	521	aldehyde dehydrogenase; Provisional	99.5
cd07099	453	ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-di	99.5
cd07123	522	ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate	99.5
PLN00412	496	NADP-dependent glyceraldehyde-3-phosphate dehydrog	99.49
TIGR01236	533	D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehy	99.48
cd07138	466	ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric ac	99.48
KOG2452|consensus	881		99.48
PRK11904	1038	bifunctional proline dehydrogenase/pyrroline-5-car	99.48
PRK15398	465	aldehyde dehydrogenase EutE; Provisional	99.48
cd07121	429	ALDH_EutE Ethanolamine utilization protein EutE-li	99.47
cd07149	453	ALDH_y4uC Uncharacterized ALDH (y4uC) with similar	99.46
cd07093	455	ALDH_F8_HMSADH Human aldehyde dehydrogenase family	99.46
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.46
cd07077	397	ALDH-like NAD(P)+-dependent aldehyde dehydrogenase	99.45
cd07087	426	ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl	99.45
cd07122	436	ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydr	99.45
cd07134	433	ALDH_AlkH-like Pseudomonas putida Aldehyde dehydro	99.44
cd07106	446	ALDH_AldA-AAD23400 Streptomyces aureofaciens putat	99.44
cd07098	465	ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and	99.42
TIGR01238	500	D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehy	99.39
cd07111	480	ALDH_F16 Aldehyde dehydrogenase family 16A1-like.	99.37
cd07129	454	ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydr	99.37
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.37
PRK11809	1318	putA trifunctional transcriptional regulator/proli	99.37
TIGR00407	398	proA gamma-glutamyl phosphate reductase. The prosi	99.36
cd07084	442	ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent	99.36
cd07078	432	ALDH NAD(P)+ dependent aldehyde dehydrogenase fami	99.3
cd06534	367	ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase s	99.3
TIGR02518	488	EutH_ACDH acetaldehyde dehydrogenase (acetylating)	99.29
PRK11905	1208	bifunctional proline dehydrogenase/pyrroline-5-car	99.28
PRK13805	862	bifunctional acetaldehyde-CoA/alcohol dehydrogenas	99.28
KOG2456|consensus	477		99.26
cd07127	549	ALDH_PAD-PaaZ Phenylacetic acid degradation protei	99.25
COG4230	769	Delta 1-pyrroline-5-carboxylate dehydrogenase [Ene	99.24
PRK00197	417	proA gamma-glutamyl phosphate reductase; Provision	99.18
cd07079	406	ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate redu	99.11
cd07080	422	ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC. Ac	98.93
KOG2454|consensus	583		98.79
KOG2453|consensus	507		98.35
KOG2455|consensus	561		97.71
PRK11905	1208	bifunctional proline dehydrogenase/pyrroline-5-car	96.9
PF05893	399	LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR0086	93.14

>KOG2450|consensus

Probab=99.82  E-value=1.1e-20  Score=137.88  Aligned_cols=66  Identities=21%  Similarity=0.304  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         2 ~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++||+|++++++.++..++.+ .+...+++++|+|||+.|+|||||+++..||++|||++||++|-
T Consensus       126 ~~~~ry~ag~ad~~~~~~~~~~-~~~~~yt~~eP~GV~G~I~pWN~Pllm~awKlaPALa~GNtvV~  191 (501)
T KOG2450|consen  126 IDCFRYYAGWADKIHGSTIPTD-GEFFAYTRREPIGVCGQIIPWNFPLLMQAWKLAPALAAGNTVVL  191 (501)
T ss_pred             hhHHHhhccchhhcccccCCCC-CceEEEecCCcceeeeEeccCchHHHHHHHhhhhHHhhCcEEEe
Confidence            5799999999999988876654 46789999999999999999999999999999999999999984

>KOG2451|consensus

Probab=99.79  E-value=2.4e-19  Score=128.60  Aligned_cols=66  Identities=26%  Similarity=0.322  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .-|+|||+++++..|+.+++..++++..+.+||+||+++|+|||||.++..+|.++||++|||+|-
T Consensus       127 ~f~eWyAeEA~RvyGdii~s~~~~rr~i~ikQPvGV~alItPWNFP~AMItRK~gAALAaGCTvVv  192 (503)
T KOG2451|consen  127 AFFEWYAEEARRVYGDIIPSLNPNRRLIVIKQPVGVVALITPWNFPAAMITRKAGAALAAGCTVVV  192 (503)
T ss_pred             HHHHHHHHHhhhhhccccCCCCCCceEEEEeccceeEEEecCcCChHHHHHhHHHHHHhcCceEEE
Confidence            458999999999999998877778899999999999999999999999999999999999999984

>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]

Probab=99.74  E-value=5.2e-18  Score=123.70  Aligned_cols=66  Identities=27%  Similarity=0.374  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           2 SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         2 ~~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...+++|++.++++.++..+... +...+++++|+|||++|+|||||+++.+||++|||++||+||-
T Consensus       101 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~P~GVv~~I~PwNfP~~~~~~k~apALaaGntVV~  166 (472)
T COG1012         101 ADFIRYYAEEARRLEGETIPTDK-GSKALVRREPLGVVGAITPWNFPLALAAWKLAPALAAGNTVVL  166 (472)
T ss_pred             HHHHHHHHHHHHHhcCCccCCCC-CcceEEEeecceEEEEECCCCCHHHHHHhhHHHHHHcCCEEEE
Confidence            35688999999988887644433 5678999999999999999999999999999999999999984

>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12

Probab=99.68  E-value=9.9e-17  Score=117.48  Aligned_cols=67  Identities=24%  Similarity=0.084  Sum_probs=54.4

Q ss_pred             hhHHHHHHHHHHhhhcccc--cCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           2 SKALSTSAKRIQKELAEIT--LDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         2 ~~~~~~~a~~a~~~~~~~~--~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+.+++|++.+.+..++..  +....+...+++|+|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       107 ~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~v~r~P~GVV~~I~PwNfP~~l~~~~ia~ALaaGN~VVl  175 (489)
T cd07126         107 RKFLENFAGDQVRFLARSFNVPGDHQGQQSSGYRWPYGPVAIITPFNFPLEIPALQLMGALFMGNKPLL  175 (489)
T ss_pred             HHHHHHHHHHHHHhcCceeccCCCCCCceeEEEEecceEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            3568888888877766542  221124467899999999999999999999999999999999999984

Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.

>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional

Probab=99.66  E-value=2.7e-16  Score=114.68  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+...++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       114 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  179 (482)
T PRK11241        114 SFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVL  179 (482)
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceEEEEEeeceEEEEECCCcChHHHHHHHHHHHHHhCCEEEE
Confidence            457888888887766644432234456889999999999999999999999999999999999984

>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]

Probab=99.66  E-value=2.2e-16  Score=118.19  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+....+...+++++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       217 ~~~~~~a~~a~~~~g~~~~~~~~~~~~~~~reP~GVV~~I~PwNfPl~l~~~~iapALaAGNtVVl  282 (604)
T PLN02419        217 EVVEHACGMATLQMGEYLPNVSNGVDTYSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFIL  282 (604)
T ss_pred             HHHHHHHHHHHHhhCCcccccCCCccceEEecCccEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            457889998888877654432234456889999999999999999999999999999999999984

>PLN02315 aldehyde dehydrogenase family 7 member

Probab=99.64  E-value=5.4e-16  Score=113.83  Aligned_cols=66  Identities=39%  Similarity=0.640  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.++..+...++...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  187 (508)
T PLN02315        122 DMCDFAVGLSRQLNGSIIPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVW  187 (508)
T ss_pred             HHHHHHHHHHHHhcCccccCCCCCceeEEEEecceEEEEECCCcchHHHHHHHHhHHHHcCCEEEe
Confidence            357788888888776654432234455778999999999999999999999999999999999984

>TIGR03374 ABALDH 1-pyrroline dehydrogenase

Probab=99.64  E-value=6.6e-16  Score=112.32  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++.+.++..+....+...+++|+|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VV~  170 (472)
T TIGR03374       105 DVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVL  170 (472)
T ss_pred             HHHHHHHHHHHHhcCcccCccCCCceEEEEEecceEEEEECCCCchHHHHHHHHHHHHhcCCEEEe
Confidence            346777777766655422221123456889999999999999999999999999999999999984

Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.

>PRK10090 aldehyde dehydrogenase A; Provisional

Probab=99.64  E-value=7.8e-16  Score=110.46  Aligned_cols=66  Identities=23%  Similarity=0.162  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+...++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        39 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~Vvl  104 (409)
T PRK10090         39 DYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVI  104 (409)
T ss_pred             HHHHHHHHHHHHhcCcccCCCCCCceeEEEEecccEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            467889998888766543322224467889999999999999999999999999999999999984

>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like

Probab=99.63  E-value=1e-15  Score=111.28  Aligned_cols=65  Identities=25%  Similarity=0.326  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       105 ~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~Pl~~~~~~i~~AL~aGN~Vvl  169 (475)
T cd07117         105 DHFRYFAGVIRAEEGSANMID-EDTLSIVLREPIGVVGQIIPWNFPFLMAAWKLAPALAAGNTVVI  169 (475)
T ss_pred             HHHHHHHHHHHHhcCcccccC-CCceeEEEEeecceEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            456788887777666543322 23456889999999999999999999999999999999999984

Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.

>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like

Probab=99.62  E-value=1.4e-15  Score=110.22  Aligned_cols=66  Identities=27%  Similarity=0.388  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+...++...++.++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       103 ~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~Pl~~~~~~i~~ALaaGN~VIl  168 (473)
T cd07097         103 QIFRYYAGEALRLSGETLPSTRPGVEVETTREPLGVVGLITPWNFPIAIPAWKIAPALAYGNTVVF  168 (473)
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceEEEEEEeeeeEEEEcccChHHHHHHHHHHHHHHcCCEEEE
Confidence            357888888888776544332234567899999999999999999999999999999999999984

Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.

>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like

Probab=99.62  E-value=1.3e-15  Score=110.60  Aligned_cols=65  Identities=29%  Similarity=0.347  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       105 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VV~  169 (479)
T cd07116         105 DHFRYFAGCIRAQEGSISEID-ENTVAYHFHEPLGVVGQIIPWNFPLLMATWKLAPALAAGNCVVL  169 (479)
T ss_pred             HHHHHHHHhHHHcCCeeecCC-CCceEEEEEeccceEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            356788887777666543322 34457889999999999999999999999999999999999984

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.

>PLN02174 aldehyde dehydrogenase family 3 member H1

Probab=99.62  E-value=1.5e-15  Score=111.26  Aligned_cols=66  Identities=20%  Similarity=0.109  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHhhhcccc---cCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEIT---LDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~---~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..+...   .....+...+++|+|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  145 (484)
T PLN02174         77 NSIKLALKQLKNWMAPEKAKTSLTTFPASAEIVSEPLGVVLVISAWNYPFLLSIDPVIGAISAGNAVVL  145 (484)
T ss_pred             HHHHHHHHHHHHHhcccccccccccCCcceEEEEecceEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            467788888877665211   111123356899999999999999999999999999999999999984

>PLN02766 coniferyl-aldehyde dehydrogenase

Probab=99.62  E-value=1.5e-15  Score=111.16  Aligned_cols=65  Identities=25%  Similarity=0.182  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..++..+.. .+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       127 ~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  191 (501)
T PLN02766        127 GLLRYYAGAADKIHGETLKMS-RQLQGYTLKEPIGVVGHIIPWNFPSTMFFMKVAPALAAGCTMVV  191 (501)
T ss_pred             HHHHHHHHHHHHhcCceeccC-CCceEEEEeccceEEEEECCCCChHHHHHHHHHHHHHcCCEEEE
Confidence            467888888888777643322 23456789999999999999999999999999999999999984

>PLN02278 succinic semialdehyde dehydrogenase

Probab=99.62  E-value=1.7e-15  Score=110.79  Aligned_cols=66  Identities=29%  Similarity=0.370  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++|+|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~GvV~~I~PwN~P~~~~~~~i~~ALaaGN~VVl  193 (498)
T PLN02278        128 SFLEYFAEEAKRVYGDIIPSPFPDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALAAGCTVVV  193 (498)
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceEEEEeecccEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888887776544433234456788999999999999999999999999999999999984

>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional

Probab=99.61  E-value=2.1e-15  Score=109.36  Aligned_cols=65  Identities=18%  Similarity=0.044  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..+...... .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GvV~~I~PwN~P~~~~~~~~~~ALaaGN~vv~  159 (462)
T PRK13968         95 NLCDWYAEHGPAMLKAEPTLV-ENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPILLAGNGYLL  159 (462)
T ss_pred             HHHHHHHHHHHHhhCCccccC-CCceEEEEEeccceEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            357788888777654332222 24467899999999999999999999999999999999999984

>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like

Probab=99.61  E-value=1.9e-15  Score=109.96  Aligned_cols=65  Identities=25%  Similarity=0.329  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       105 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~VV~  169 (480)
T cd07559         105 DHFRYFAGVIRAQEGSLSEID-EDTLSYHFHEPLGVVGQIIPWNFPLLMAAWKLAPALAAGNTVVL  169 (480)
T ss_pred             HHHHHHHHHHHHhcCccccCC-CCceeEEEEeccceEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888777666543332 24567889999999999999999999999999999999999984

Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.

>PLN02467 betaine aldehyde dehydrogenase

Probab=99.61  E-value=2.1e-15  Score=110.53  Aligned_cols=66  Identities=23%  Similarity=0.245  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHhhhccccc-CC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITL-DP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~-~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|+++++++.++... ..  ..+...+++|+|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~Vv~  184 (503)
T PLN02467        116 GCFEYYADLAEALDAKQKAPVSLPMETFKGYVLKEPLGVVGLITPWNYPLLMATWKVAPALAAGCTAVL  184 (503)
T ss_pred             HHHHHHHHHHHHhcCccccccCCCCCCceeEEEEecCceEEEECCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            4678899988888665321 11  113356889999999999999999999999999999999999984

>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative

Probab=99.61  E-value=2.2e-15  Score=110.37  Aligned_cols=66  Identities=15%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       135 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~P~~~~~~~i~~ALaaGN~VVl  200 (511)
T TIGR01237       135 DFCEYYAREMERLAGQGVNLDIEGETNRYFYQPRGVAVVISPWNFPMAIAVGMTVAPIVTGNCVVL  200 (511)
T ss_pred             HHHHHHHHHHHHhcCccccCCCCCceeEEEEecceeEEEECCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence            467888888888776543322234467889999999999999999999999999999999999984

This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.

>PLN02466 aldehyde dehydrogenase family 2 member

Probab=99.61  E-value=1.9e-15  Score=111.64  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.+++|++++++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       164 ~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~l~~~~i~pALaaGN~VVl  228 (538)
T PLN02466        164 RLFRYYAGWADKIHGLTVPAD-GPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVL  228 (538)
T ss_pred             HHHHHHHHHHHHhcCcccccC-CCceEEEEEecceEEEEECCCchHHHHHHHHHhHHHHcCCEEEe
Confidence            467888888888877655432 23356899999999999999999999999999999999999984

>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins

Probab=99.61  E-value=2.1e-15  Score=109.50  Aligned_cols=66  Identities=42%  Similarity=0.601  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.++++.++..+...++...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       101 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VIl  166 (478)
T cd07086         101 DICDYAVGLSRMLYGLTIPSERPGHRLMEQWNPLGVVGVITAFNFPVAVPGWNAAIALVCGNTVVW  166 (478)
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceEEEEEecceeEEEECCCCcHHHHHHHHHHHHHHcCCeEEE
Confidence            456778888887776544432234466889999999999999999999999999999999999984

ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).

>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like

Probab=99.61  E-value=2.2e-15  Score=109.32  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       110 ~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VV~  174 (476)
T cd07142         110 RLFRYYAGWADKIHGMTLPAD-GPHHVYTLHEPIGVVGQIIPWNFPLLMFAWKVGPALACGNTIVL  174 (476)
T ss_pred             HHHHHHHHHHHHhcCcccccC-CCceEEEEEeceeeEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888877766654432 23456789999999999999999999999999999999999984

Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.

>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L

Probab=99.61  E-value=2.3e-15  Score=109.83  Aligned_cols=66  Identities=21%  Similarity=0.365  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHhhhcccccCC---CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP---PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+..   ..+...+++++|+||+++|+|||||+.+..|++++||++||+||-
T Consensus       112 ~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~r~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVl  180 (486)
T cd07140         112 QTFRYFAGWCDKIQGKTIPINQARPNRNLTLTKREPIGVCGIVIPWNYPLMMLAWKMAACLAAGNTVVL  180 (486)
T ss_pred             HHHHHHHHHHHHhcCccccccccCCCCceEEEEeeccceEEEEcCCchHHHHHHHHHHHHHHhCCEEEE
Confidence            457888888888776644321   112246789999999999999999999999999999999999984

10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.

>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like

Probab=99.60  E-value=2.7e-15  Score=109.28  Aligned_cols=65  Identities=20%  Similarity=0.316  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++++++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       113 ~~~~~~a~~a~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~Vvl  177 (481)
T cd07143         113 DTFRYYGGWADKIHGQVIETD-IKKLTYTRHEPIGVCGQIIPWNFPLLMCAWKIAPALAAGNTIVL  177 (481)
T ss_pred             HHHHHHHHHHHHhcCccccCC-CCceEEEEEecceeEEEECCCcChHHHHHHHHHHHHHcCCEEEE
Confidence            457888888887766644332 24456789999999999999999999999999999999999984

NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.

>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed

Probab=99.60  E-value=3.8e-15  Score=107.95  Aligned_cols=66  Identities=27%  Similarity=0.184  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHhhhcccccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..+......  ......+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~PwN~Pl~~~~~~~~~ALaaGN~VV~  156 (457)
T PRK09406         89 KGFRYYAEHAEALLADEPADAAAVGASRAYVRYQPLGVVLAVMPWNFPLWQVVRFAAPALMAGNVGLL  156 (457)
T ss_pred             HHHHHHHHHHHHHhCCccccccCCCCceEEEEEecceeEEEECCccchHHHHHHHHHHHHHcCCEEEE
Confidence            457888888877765432211  123456889999999999999999999999999999999999984

>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like

Probab=99.60  E-value=3.3e-15  Score=108.12  Aligned_cols=66  Identities=26%  Similarity=0.210  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+.+..++..+....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vi~  163 (465)
T cd07151          98 AITREAATFPLRMEGRILPSDVPGKENRVYREPLGVVGVISPWNFPLHLSMRSVAPALALGNAVVL  163 (465)
T ss_pred             HHHHHHHHhHHHhcCccccCCCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            456778877777666544332234456789999999999999999999999999999999999984

NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.

>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like

Probab=99.60  E-value=3.5e-15  Score=107.65  Aligned_cols=65  Identities=22%  Similarity=0.132  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+.++.++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        85 ~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~  149 (456)
T cd07107          85 ALLDYFAGLVTELKGETIPVG-GRNLHYTLREPYGVVARIVAFNHPLMFAAAKIAAPLAAGNTVVV  149 (456)
T ss_pred             HHHHHHHHHHHHhCCccccCC-CCceEEEEEecceEEEEECCcccHHHHHHHHHhHHHHcCCEEEE
Confidence            457788877777766654433 24466889999999999999999999999999999999999984

Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.

>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional

Probab=99.60  E-value=3.1e-15  Score=109.29  Aligned_cols=65  Identities=23%  Similarity=0.368  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       126 ~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~Vvl  190 (494)
T PRK09847        126 RAIRWYAEAIDKVYGEVATTS-SHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVIL  190 (494)
T ss_pred             HHHHHHHHHHHHhcCccccCC-CCceeEEEecceeEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            468889988888877654433 24456889999999999999999999999999999999999984

>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins

Probab=99.59  E-value=4.2e-15  Score=107.74  Aligned_cols=65  Identities=26%  Similarity=0.361  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++++++..++..+.. .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       110 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~AL~aGN~Vvl  174 (476)
T cd07091         110 KCLRYYAGWADKIQGKTIPID-GNFLAYTRREPIGVCGQIIPWNFPLLMLAWKLAPALAAGNTVVL  174 (476)
T ss_pred             HHHHHHHHHHHHhcCccccCC-CCceEEEEEeceeEEEEECCCcCHHHHHHHHHHHHHHcCCEEEE
Confidence            467888888877766654432 34567889999999999999999999999999999999999974

ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co

>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like

Probab=99.59  E-value=4.2e-15  Score=107.66  Aligned_cols=65  Identities=26%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. ++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        86 ~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~vvl  150 (455)
T cd07120          86 SELRYYAGLARTEAGRMIEPE-PGSFSLVLREPMGVAGIIVPWNSPVVLLVRSLAPALAAGCTVVV  150 (455)
T ss_pred             HHHHHHHHHHHHhcCcccccC-CCceEEEEEecceeEEEECCCchHHHHHHHHHHHHHHcCCEEEe
Confidence            467888888888776544332 34567899999999999999999999999999999999999984

Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.

>PRK13252 betaine aldehyde dehydrogenase; Provisional

Probab=99.59  E-value=4.3e-15  Score=108.12  Aligned_cols=65  Identities=23%  Similarity=0.246  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       111 ~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~PlGVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~  175 (488)
T PRK13252        111 DVLEYYAGLAPALEGEQIPLR-GGSFVYTRREPLGVCAGIGAWNYPIQIACWKSAPALAAGNAMIF  175 (488)
T ss_pred             HHHHHHHHHHHHhcCceeccC-CCceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHHhcCCeEEE
Confidence            467888888877766644332 24456889999999999999999999999999999999999984

>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like

Probab=99.58  E-value=5.5e-15  Score=106.77  Aligned_cols=65  Identities=22%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+++..++..+....+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~i~~ALaaGN~Vi~  152 (454)
T cd07118          88 LWRYAASLARTLHGDSYNNLGDDMLGLVLREPIGVVGIITPWNFPFLILSQKLPFALAAGCTVVV  152 (454)
T ss_pred             HHHHHHHHHHHhcCcccccCCCCceeeEEeecceEEEEECCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence            46777777766665443322224456789999999999999999999999999999999999984

Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.

>TIGR01780 SSADH succinate-semialdehyde dehydrogenase

Probab=99.58  E-value=5.3e-15  Score=106.64  Aligned_cols=66  Identities=24%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..++..+....+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        85 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vvl  150 (448)
T TIGR01780        85 SFLEWFAEEAKRVYGDTIPSPQSDKRLLVIKQPVGVCAAITPWNFPAAMITRKAGAALAAGCTVVV  150 (448)
T ss_pred             HHHHHHHHHHHHhcCccccCCCCCceeEEEEeeeeEEEEEcCCChHHHHHHHHHHHHHHcCCeEee
Confidence            346777777777766644332234456788999999999999999999999999999999999984

SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).

>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA

Probab=99.58  E-value=5.4e-15  Score=108.29  Aligned_cols=65  Identities=23%  Similarity=0.183  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VVl  199 (512)
T cd07124         135 DFLEYYAREMLRLRGFPVEMV-PGEDNRYVYRPLGVGAVISPWNFPLAILAGMTTAALVTGNTVVL  199 (512)
T ss_pred             HHHHHHHHHHHHhcCccccCC-CCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            467888888888866544332 34567899999999999999999999999999999999999984

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.

>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like

Probab=99.58  E-value=6.5e-15  Score=105.84  Aligned_cols=65  Identities=26%  Similarity=0.327  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+++..++..+...++...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        88 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~Vil  152 (451)
T cd07150          88 LLRAAAGECRRVRGETLPSDSPGTVSMSVRRPLGVVAGITPFNYPLILATKKVAFALAAGNTVVL  152 (451)
T ss_pred             HHHHHHHHHHHhcCccccCCCCCceeEEEEecccEEEEECCCccHHHHHHHHHHHHHhcCCeEEE
Confidence            56777777777766544433234567899999999999999999999999999999999999983

Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.

>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional

Probab=99.58  E-value=6.1e-15  Score=106.87  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.+...+....+...+++|+|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       106 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~r~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VIl  171 (475)
T PRK13473        106 DVFRFFAGAARCLEGKAAGEYLEGHTSMIRRDPVGVVASIAPWNYPLMMAAWKLAPALAAGNTVVL  171 (475)
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceeEEEEecceeEEEEccCChHHHHHHHHHHHHHhcCCEEEE
Confidence            356777777777665533221223456789999999999999999999999999999999999984

>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like

Probab=99.58  E-value=6.9e-15  Score=105.55  Aligned_cols=66  Identities=21%  Similarity=0.178  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++..++..+...+....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        66 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VVl  131 (432)
T cd07105          66 GMLREAASLITQIIGGSIPSDKPGTLAMVVKEPVGVVLGIAPWNAPVILGTRAIAYPLAAGNTVVL  131 (432)
T ss_pred             HHHHHHHHHHHHhcCeecccCCCCceeEEEEecceEEEEECCcCcHHHHHHHHHHHHHhcCCEEEE
Confidence            467788887776544443332234456889999999999999999999999999999999999984

Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.

>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like

Probab=99.58  E-value=6.7e-15  Score=106.87  Aligned_cols=66  Identities=24%  Similarity=0.249  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHHhhhcccccCC-----CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP-----PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~-----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++.+..++..+..     ..+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       105 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~Vvl  175 (477)
T cd07113         105 NFLRYFAGWATKINGETLAPSIPSMQGERYTAFTRREPVGVVAGIVPWNFSVMIAVWKIGAALATGCTIVI  175 (477)
T ss_pred             HHHHHHHHHHHHhcCcccccccccccCCCceEEEEEeecceEEEEcCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            357788888777666543211     112356789999999999999999999999999999999999984

NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.

>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B

Probab=99.58  E-value=5.4e-15  Score=107.38  Aligned_cols=65  Identities=43%  Similarity=0.669  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.++.+.++..+...++...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vvl  165 (474)
T cd07130         101 ICDFAVGLSRQLYGLTIPSERPGHRMMEQWNPLGVVGVITAFNFPVAVWGWNAAIALVCGNVVVW  165 (474)
T ss_pred             HHHHHHHhHHHhcCccccCCCCCceEEEEEecceeEEEEccCCCHHHHHHHHhhHHHHcCCeEEe
Confidence            45667776666655543332234456788999999999999999999999999999999999984

Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.

>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like

Probab=99.58  E-value=6.9e-15  Score=105.88  Aligned_cols=64  Identities=19%  Similarity=0.167  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+.+..++..... ++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VI~  130 (431)
T cd07095          67 KIDISIKAYHERTGERATPM-AQGRAVLRHRPHGVMAVFGPFNFPGHLPNGHIVPALLAGNTVVF  130 (431)
T ss_pred             HHHHHHHHHHHhcCCcccCC-CCceEEEEEecceEEEEECCCchHHHHHHHHHHHHHhcCCEEEe
Confidence            46677777766665543322 24567899999999999999999999999999999999999984

N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.

>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional

Probab=99.58  E-value=7.4e-15  Score=107.69  Aligned_cols=65  Identities=23%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHhhh-cccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKEL-AEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~-~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+.. ++.... ..+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       139 ~~~~~~a~~~~~~~~~~~~~~-~~g~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVl  204 (514)
T PRK03137        139 DFLEYYARQMLKLADGKPVES-RPGEHNRYFYIPLGVGVVISPWNFPFAIMAGMTLAAIVAGNTVLL  204 (514)
T ss_pred             HHHHHHHHHHHHhcCCccccC-CCCceEEEEEecCcEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            35678888887764 332222 234467889999999999999999999999999999999999984

>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like

Probab=99.58  E-value=7.1e-15  Score=106.66  Aligned_cols=65  Identities=26%  Similarity=0.405  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~Vil  167 (482)
T cd07119         103 NCFRYYAGLATKETGEVYDVP-PHVISRTVREPVGVCGLITPWNYPLLQAAWKLAPALAAGNTVVI  167 (482)
T ss_pred             HHHHHHHHHHHHhcCccccCC-CCceEEEEEeeeeeEEEEcCCchHHHHHHHHHHHHHhcCCEEEE
Confidence            467788888877666544332 34567899999999999999999999999999999999999984

Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.

>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like

Probab=99.58  E-value=7.4e-15  Score=106.72  Aligned_cols=65  Identities=25%  Similarity=0.339  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++++++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       113 ~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~  177 (484)
T cd07144         113 AVIRYYAGWADKIQGKTIPTS-PNKLAYTLHEPYGVCGQIIPWNYPLAMAAWKLAPALAAGNTVVI  177 (484)
T ss_pred             HHHHHHHHHHHHhcCceecCC-CCceEEEEEecceEEEEECcCCCHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888887766554432 24456889999999999999999999999999999999999984

NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.

>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like

Probab=99.57  E-value=8.9e-15  Score=105.82  Aligned_cols=66  Identities=21%  Similarity=0.097  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..+........+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~i~~ALaaGN~Vvl  170 (471)
T cd07139         105 ALLRYYAALARDFPFEERRPGSGGGHVLVRREPVGVVAAIVPWNAPLFLAALKIAPALAAGCTVVL  170 (471)
T ss_pred             HHHHHHHHHHHHhcCCccccCCCCceEEEEEEeccEEEEEcCCchHHHHHHHHHHHHHhcCCEEEE
Confidence            357788887777654322222224456889999999999999999999999999999999999984

The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.

>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like

Probab=99.57  E-value=7.6e-15  Score=106.23  Aligned_cols=65  Identities=29%  Similarity=0.461  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..++..+.. .+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GvV~~i~p~N~P~~~~~~~~~~ALaaGN~Vv~  157 (462)
T cd07112          93 NTFRWYAEAIDKVYGEVAPTG-PDALALITREPLGVVGAVVPWNFPLLMAAWKIAPALAAGNSVVL  157 (462)
T ss_pred             HHHHHHHHHHHHhcCceecCC-CCeEEEEEEeeeeeEEEECCCchHHHHHHHHHHHHHHcCCeeee
Confidence            467788888877766543332 34467889999999999999999999999999999999999984

NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.

>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2

Probab=99.57  E-value=8.4e-15  Score=106.30  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.++...++..+....+...+.+++|+||+++|+|||||+.+..|++++||++||+||-
T Consensus       105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~Vvl  169 (478)
T cd07085         105 VVEFACSIPHLLKGEYLENVARGIDTYSYRQPLGVVAGITPFNFPAMIPLWMFPMAIACGNTFVL  169 (478)
T ss_pred             HHHHHHHHHHHhCCeecccCCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHhcCCEEEE
Confidence            46777777666666544322224457899999999999999999999999999999999999974

Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.

>PLN02203 aldehyde dehydrogenase

Probab=99.57  E-value=9.5e-15  Score=106.91  Aligned_cols=66  Identities=21%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHhhhccc---ccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEI---TLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~---~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..++.   .+....+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~reP~GVv~~I~pwN~P~~~~~~~i~~ALaaGN~VVl  141 (484)
T PLN02203         73 KSANLALSNLKKWMAPKKAKLPLVAFPATAEVVPEPLGVVLIFSSWNFPIGLSLEPLIGAIAAGNAVVL  141 (484)
T ss_pred             HHHHHHHHHHHHHhccccccCCcccCCceeEEEEecccEEEEEcCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            35677777777665432   1111123467899999999999999999999999999999999999984

>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like

Probab=99.57  E-value=8.6e-15  Score=106.04  Aligned_cols=65  Identities=26%  Similarity=0.360  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+++..++..+....+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vvl  168 (478)
T cd07131         104 MAQYAAGEGRRLFGETVPSELPNKDAMTRRQPIGVVALITPWNFPVAIPSWKIFPALVCGNTVVF  168 (478)
T ss_pred             HHHHHHHHHHHhCCcccccCCCCceEEEEeeceeEEEEECCcCcHHHHHHHHHHHHHHcCCEEEE
Confidence            46777877777666544332224457899999999999999999999999999999999999984

Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.

>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like

Probab=99.57  E-value=9.2e-15  Score=106.82  Aligned_cols=66  Identities=18%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHhhhccccc-CCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITL-DPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..++... ....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVl  187 (500)
T cd07083         121 DFIRYYARAALRLRYPAVEVVPYPGEDNESFYVGLGAGVVISPWNFPVAIFTGMIVAPVAVGNTVIA  187 (500)
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCCceEEEEEeccceEEEEcCCccHHHHHHHHHHHHHHcCCeEEE
Confidence            4577888888877665321 11224456788999999999999999999999999999999999984

ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.

>TIGR01804 BADH glycine betaine aldehyde dehydrogenase

Probab=99.57  E-value=7.1e-15  Score=106.33  Aligned_cols=65  Identities=26%  Similarity=0.283  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..++..+... ....+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       102 ~~l~~~a~~~~~~~~~~~~~~~-~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vvl  166 (467)
T TIGR01804       102 DVFEFFAGLADKDGGEIIPLPI-PSFSYTIREPLGVCVGIGAWNYPLQIASWKIAPALAAGNAMVF  166 (467)
T ss_pred             HHHHHHHHHHHHhCCccccCCC-CceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHHhcCCEEEe
Confidence            4577888888776665443322 2456889999999999999999999999999999999999983

Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).

>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like

Probab=99.57  E-value=8.8e-15  Score=105.17  Aligned_cols=65  Identities=32%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++.+.+..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        79 ~~l~~~~~~~~~~~~~~~~~~-~g~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~Vvl  143 (443)
T cd07152          79 GELHEAAGLPTQPQGEILPSA-PGRLSLARRVPLGVVGVISPFNFPLILAMRSVAPALALGNAVVL  143 (443)
T ss_pred             HHHHHHHHhHHHhCCcccccc-CCceeEEEEecceEEEEECCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence            356677776665555443332 34567889999999999999999999999999999999999983

NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.

>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like

Probab=99.57  E-value=9.2e-15  Score=105.35  Aligned_cols=65  Identities=23%  Similarity=0.301  Sum_probs=54.4

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.+++|++..++..++..+.. .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        86 ~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~Vvl  150 (454)
T cd07109          86 RYFEYYGGAADKLHGETIPLG-PGYFVYTVREPHGVTGHIIPWNYPLQITGRSVAPALAAGNAVVV  150 (454)
T ss_pred             HHHHHHHHHHHHhcCcccccC-CCceEEEEEeeeeEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888777766554432 34567899999999999999999999999999999999999984

Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.

>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins

Probab=99.57  E-value=9.8e-15  Score=105.59  Aligned_cols=66  Identities=23%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHhhhcccc-cCC---CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEIT-LDP---PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~-~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++.. +..   ..+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~P~~~~~~~~~~AL~aGN~vvl  156 (459)
T cd07089          87 GHLRYFADLADSFPWEFDLPVPALRGGPGRRVVRREPVGVVAAITPWNFPFFLNLAKLAPALAAGNTVVL  156 (459)
T ss_pred             HHHHHHHHHHHHhcCceecCcccccCCCceeEEEEeeccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888887766542 221   124467899999999999999999999999999999999999984

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.

>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like

Probab=99.56  E-value=8e-15  Score=106.56  Aligned_cols=65  Identities=25%  Similarity=0.319  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++++++..++..+.. .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       114 ~~l~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VVl  178 (481)
T cd07141         114 KVLRYYAGWADKIHGKTIPMD-GDFFTYTRHEPVGVCGQIIPWNFPLLMAAWKLAPALACGNTVVL  178 (481)
T ss_pred             HHHHHHHHHHHHhcCceecCC-CCceEEEEEeceeEEEEEccChhHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888888777654432 23456789999999999999999999999999999999999984

NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.

>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase

Probab=99.56  E-value=1.1e-14  Score=105.82  Aligned_cols=66  Identities=23%  Similarity=0.314  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHhhhcccccCCC---CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP---PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.+++|++.+++..++..+...   .+...+++++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~Pl~~~~~~~~~ALaaGN~vvl  172 (481)
T TIGR03216       104 ANFRVFADVVKNAPTECFEMATPDGKGALNYAVRKPLGVVGVISPWNLPLLLMTWKVGPALACGNTVVV  172 (481)
T ss_pred             HHHHHHHHHHHHhcCccccccCCCCCCceeEEEEeccceEEEECCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence            4577888888776655432211   12356788999999999999999999999999999999999874

Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.

>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed

Probab=99.56  E-value=8.7e-15  Score=106.65  Aligned_cols=64  Identities=17%  Similarity=0.190  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++...+..++.... ..+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       104 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~Vvl  167 (487)
T PRK09457        104 KIAISIQAYHERTGEKRSE-MADGAAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVF  167 (487)
T ss_pred             HHHHHHHHHHHhcCceecc-CCCceeEEEEeccEEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            4566666666655544322 224456889999999999999999999999999999999999984

>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

Probab=99.56  E-value=1.3e-14  Score=104.94  Aligned_cols=66  Identities=20%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHhhhcccccCC----CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP----PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+..    ..+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vvl  157 (455)
T cd07148          88 DGVELAADELGQLGGREIPMGLTPASAGRIAFTTREPIGVVVAISAFNHPLNLIVHQVAPAIAAGCPVIV  157 (455)
T ss_pred             HHHHHHHHHHHHhcCcccccccccCCCCceEEEEEecceEEEEECCCCcHHHHHHHHHHHHHHcCCEEEe
Confidence            356778887777766543321    123456889999999999999999999999999999999999984

Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.

>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1

Probab=99.56  E-value=1.2e-14  Score=104.78  Aligned_cols=65  Identities=25%  Similarity=0.294  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~  149 (457)
T cd07090          85 DCLEYYAGLAPTLSGEHVPLP-GGSFAYTRREPLGVCAGIGAWNYPIQIASWKSAPALACGNAMVY  149 (457)
T ss_pred             HHHHHHHHHHHHhCCeeeccC-CCceEEEEEeecceEEEECCCccHHHHHHHHHHHHHhcCCeeee
Confidence            457888888877666544332 24567889999999999999999999999999999999999984

NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.

>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like

Probab=99.56  E-value=1.2e-14  Score=104.92  Aligned_cols=66  Identities=24%  Similarity=0.209  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++++++..++..+...++...+.+++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       101 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VVl  166 (468)
T cd07088         101 DYIDYMAEWARRIEGEIIPSDRPNENIFIFKVPIGVVAGILPWNFPFFLIARKLAPALVTGNTIVI  166 (468)
T ss_pred             HHHHHHHHHHHHhCCccccCccccceeEEEEecceeEEEEccCchHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888877766544432224467889999999999999999999999999999999999984

Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.

>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like

Probab=99.56  E-value=1.2e-14  Score=105.41  Aligned_cols=65  Identities=18%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhhhcc-cccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAE-ITLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~-~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.++++.+. ..+..  ..+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~vi~  133 (449)
T cd07136          66 EINYAIKHLKKWMKPKRVKTPLLNFPSKSYIYYEPYGVVLIIAPWNYPFQLALAPLIGAIAAGNTAVL  133 (449)
T ss_pred             HHHHHHHHHHHHhCCCccCCccccCCceeEEEEecCeEEEEECCCchHHHHHHHHHHHHHhcCCEEEE
Confidence            577888887776544 22211  123457889999999999999999999999999999999999984

Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.

>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like

Probab=99.56  E-value=1.4e-14  Score=103.91  Aligned_cols=65  Identities=23%  Similarity=0.104  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..+...... ++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GvV~~I~P~N~Pl~~~~~~~~~ALaaGN~VV~  129 (429)
T cd07100          65 WICRYYAENAEAFLADEPIET-DAGKAYVRYEPLGVVLGIMPWNFPFWQVFRFAAPNLMAGNTVLL  129 (429)
T ss_pred             HHHHHHHHHHHHhcCCeeccC-CCceEEEEEEeeeEEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            356778888877654322211 23457889999999999999999999999999999999999984

Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.

>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase

Probab=99.56  E-value=1.2e-14  Score=107.05  Aligned_cols=66  Identities=27%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHhhhc--------ccccCCCCC-ceeEEeeec-CceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELA--------EITLDPPPN-YVLLENWNP-LGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~--------~~~~~~~~~-~~~~~~~~P-~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..+        +..+....+ ...+++++| +|||++|+|||||+.+..+++++||++||+||-
T Consensus       102 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VVl  177 (513)
T cd07128         102 GTLFAYASLGRRELPNAHFLVEGDVEPLSKDGTFVGQHILTPRRGVAVHINAFNFPVWGMLEKFAPALLAGVPVIV  177 (513)
T ss_pred             HHHHHHHHHHHhhccccccccCCcccccCCCccccceEEEEecccEEEEECCcccHHHHHHHHHHHHHHcCCEEEE
Confidence            357889998877652        222211112 134678999 599999999999999999999999999999984

The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.

>cd07133 ALDH_CALDH_CalB Coniferyl aldehyde dehydrogenase-like

Probab=99.55  E-value=1.5e-14  Score=104.19  Aligned_cols=66  Identities=21%  Similarity=0.187  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHhhhccccc-CC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITL-DP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~-~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..+.... ..  ..+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~pwN~P~~~~~~~~~~ALaaGN~vvl  134 (434)
T cd07133          66 AGIKHARKHLKKWMKPSRRHVGLLFLPAKAEVEYQPLGVVGIIVPWNYPLYLALGPLIAALAAGNRVMI  134 (434)
T ss_pred             HHHHHHHHHHHHHhCCcccCCccccCCCceEEEEecccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            4567888777765543321 11  123356889999999999999999999999999999999999984

Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.

>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like

Probab=99.55  E-value=1.7e-14  Score=103.98  Aligned_cols=66  Identities=24%  Similarity=0.356  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHhhhc---ccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELA---EITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~---~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.+   ...+....+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGN~VV~  153 (456)
T cd07110          85 GCFEYYADLAEQLDAKAERAVPLPSEDFKARVRREPVGVVGLITPWNFPLLMAAWKVAPALAAGCTVVL  153 (456)
T ss_pred             HHHHHHHHHHHHhhccCCccccCCCCCceeEEEEecceeEEEECCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            456788888777642   222222224467889999999999999999999999999999999999985

Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.

>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like

Probab=99.55  E-value=1.9e-14  Score=103.74  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHhhhcccccCCC----CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP----PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.+++|++.++++.++..+...    .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VV~  156 (456)
T cd07145          87 RLFKLAAEEAKVLRGETIPVDAYEYNERRIAFTVREPIGVVGAITPFNFPANLFAHKIAPAIAVGNSVVV  156 (456)
T ss_pred             HHHHHHHHHHHHhcCccccCccccccCCceeEEEEecceeEEEECCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            4577888877766665433221    13356788999999999999999999999999999999999984

NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.

>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like

Probab=99.54  E-value=1.9e-14  Score=103.80  Aligned_cols=66  Identities=21%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~Vil  152 (457)
T cd07114          87 EWYRYYAGLADKIEGAVIPVDKGDYLNFTRREPLGVVAAITPWNSPLLLLAKKLAPALAAGNTVVL  152 (457)
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHHHhcCCeEEe
Confidence            356777777766655543332234567889999999999999999999999999999999999984

Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.

>cd07104 ALDH_BenzADH-like ALDH subfamily: NAD(P)+-dependent benzaldehyde dehydrogenase II, vanillin dehydrogenase, p-hydroxybenzaldehyde dehydrogenase and related proteins

Probab=99.54  E-value=2.4e-14  Score=102.21  Aligned_cols=65  Identities=31%  Similarity=0.320  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+.+..++..+....+...+.+++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        67 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~  131 (431)
T cd07104          67 ILREAAGLPRRPEGEILPSDVPGKESMVRRVPLGVVGVISPFNFPLILAMRSVAPALALGNAVVL  131 (431)
T ss_pred             HHHHHHHHHHHhcCccccCCCCCceeEEEEeeeeeEEEECCCCcHHHHHHHHHHHHHHcCCeEEe
Confidence            46677777766655543332234567889999999999999999999999999999999999984

ALDH subfamily which includes the NAD(P)+-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) involved in the oxidation of benzyl alcohol to benzoate; p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes the oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid; vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid as seen in Pseudomonas putida KT2440; and other related sequences.

>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase

Probab=99.54  E-value=2.3e-14  Score=104.09  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHhhhcccccC----CCCCceeEEeeecC-ceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLD----PPPNYVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~----~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..++..+.    ...+...+++++|+ |||++|+|||||+.+..+++++||++||+||-
T Consensus       102 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~Vvl  172 (472)
T TIGR03250       102 DVLTFAAAEALRDDGQIFSCDLTPHGKARKVFTQREPLLGVISAITPFNHPMNQVAHKIAPAIATNNRMVV  172 (472)
T ss_pred             HHHHHHHHHHHHhcCcccccccCCCCCCceEEEEEcCCCCEEEEEcCCcHHHHHHHHHHHHHHHcCCEEEE
Confidence            35688888887776654321    11134568899998 99999999999999999999999999999984

It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.

>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase

Probab=99.54  E-value=2e-14  Score=104.64  Aligned_cols=64  Identities=20%  Similarity=0.201  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++++....+..++..... .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVl  165 (484)
T TIGR03240       102 KVAISIKAYHERTGESENPM-PDGRAVLRHRPHGVVAVFGPYNFPGHLPNGHIVPALLAGNTVVF  165 (484)
T ss_pred             HHHHHHHHHHHhcCccccCC-CCceeEEEEecccEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            45556666655555432221 23456888999999999999999999999999999999999983

Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.

>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins

Probab=99.54  E-value=2.6e-14  Score=103.05  Aligned_cols=66  Identities=24%  Similarity=0.114  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHhhhccc---ccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEI---TLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~---~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..+..   .+........+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vvl  134 (432)
T cd07137          66 SSCKLAIKELKKWMAPEKVKTPLTTFPAKAEIVSEPLGVVLVISAWNFPFLLSLEPVIGAIAAGNAVVL  134 (432)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCcccCCceeEEEEecCcEEEEEcCCchHHHHHHHHHHHHHhcCCEEEE
Confidence            35677777776644321   1111112346789999999999999999999999999999999999984

Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.

>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like

Probab=99.54  E-value=2.4e-14  Score=103.18  Aligned_cols=65  Identities=25%  Similarity=0.333  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++++++..++..+.. .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        86 ~~l~~~~~~~~~~~g~~~~~~-~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~  150 (453)
T cd07115          86 DTFRYYAGWADKIEGEVIPVR-GPFLNYTVREPVGVVGAIVPWNFPLMFAAWKVAPALAAGNTVVL  150 (453)
T ss_pred             HHHHHHHHHHHHhcCceecCC-CCceEEEEecceeEEEEEcCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence            346777777777766544332 34567899999999999999999999999999999999999984

4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.

>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN

Probab=99.54  E-value=2.1e-14  Score=108.29  Aligned_cols=66  Identities=26%  Similarity=0.096  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHhhh--------cccccCCCC-CceeEEeeecC-ceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKEL--------AEITLDPPP-NYVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~--------~~~~~~~~~-~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..        ++..+...+ +...+++|+|+ |||++|+|||||+.+..+++++||++||+||-
T Consensus       102 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~P~~Gvv~~I~pwN~P~~~~~~~~~~ALaaGN~Vv~  177 (663)
T TIGR02278       102 GTLFTYSSLGRRELPDANLIPEDEFEPLSKDGSFQGRHILTPKGGVAVQINAFNFPVWGLLEKFAPAFLAGVPTLA  177 (663)
T ss_pred             HHHHHHHHhhhhhccccccccCCceeccCCCCccceEEEEEeCCceEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            45788888887632        333332211 22468899998 99999999999999999999999999999983

This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.

>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like

Probab=99.54  E-value=2.9e-14  Score=103.06  Aligned_cols=66  Identities=21%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCC----CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP----PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..++..+...    .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        84 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~ALaaGN~Vil  153 (451)
T cd07146          84 DVLRFAAAEALRDDGESFSCDLTANGKARKIFTLREPLGVVLAITPFNHPLNQVAHKIAPAIAANNRIVL  153 (451)
T ss_pred             HHHHHHHHHHHHhcCcccccccccCCCCceEEEEEeccceEEEEccCChHHHHHHHHHHHHHHcCCEEEE
Confidence            4678888877776655433211    23456789999999999999999999999999999999999984

Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.

>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins

Probab=99.53  E-value=2.6e-14  Score=103.17  Aligned_cols=66  Identities=21%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHhhhcccccCC-C---CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP-P---PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~-~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..+...... .   .+...++.++|+||+++|+|||||+.+.++++++||++||+||-
T Consensus        72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vi~  141 (436)
T cd07135          72 NDILHMLKNLKKWAKDEKVKDGPLAFMFGKPRIRKEPLGVVLIIGPWNYPVLLALSPLVGAIAAGCTVVL  141 (436)
T ss_pred             HHHHHHHHHHHHhhCCcccCCcccccCCCceEEEeccCcEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            467888888777643322211 1   13356889999999999999999999999999999999999984

Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.

>PTZ00381 aldehyde dehydrogenase family protein; Provisional

Probab=99.53  E-value=3.1e-14  Score=104.31  Aligned_cols=65  Identities=22%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhhcccccCC---CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDP---PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++..++.........   ......+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        75 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~PlGVV~iI~PwN~Pl~l~~~~l~~ALaaGN~VIl  142 (493)
T PTZ00381         75 EIEHLLKHLDEYLKPEKVDTVGVFGPGKSYIIPEPLGVVLVIGAWNYPLNLTLIPLAGAIAAGNTVVL  142 (493)
T ss_pred             HHHHHHHHHHHHhCCcccCCccccCCCceEEEEecCcEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            46666666666543321111   112356889999999999999999999999999999999999874

>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like

Probab=99.53  E-value=2.8e-14  Score=102.55  Aligned_cols=66  Identities=20%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++.++.+.+...+....+...+++++|+||+++|+|||||+....+++++||++||+||-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~P~N~P~~~~~~~~~~AL~aGN~VIl  151 (450)
T cd07092          86 DNFRFFAGAARTLEGPAAGEYLPGHTSMIRREPIGVVAQIAPWNYPLMMAAWKIAPALAAGNTVVL  151 (450)
T ss_pred             HHHHHHHHHHHHhcCcccCccCCCceeEEEEeccceEEEECCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence            345666666665554332211123356789999999999999999999999999999999999984

NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.

>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase

Probab=99.53  E-value=2.8e-14  Score=103.66  Aligned_cols=65  Identities=20%  Similarity=0.225  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++++..+....++..+....+...++.++|+||+++|+|||||+.+..|++++||++||+||-
T Consensus       105 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~Vil  169 (477)
T TIGR01722       105 VVEHACGVNSLLKGETSTQVATRVDVYSIRQPLGVCAGITPFNFPAMIPLWMFPIAIACGNTFVL  169 (477)
T ss_pred             HHHHHHHHHHHhcCcccccCCCCceEEEEEcccceEEEEccCChHHHHHHHHHHHHHhcCCEEEe
Confidence            35666666666666543322224456788999999999999999999999999999999999984

In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.

>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like

Probab=99.53  E-value=3.1e-14  Score=102.70  Aligned_cols=64  Identities=22%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+.++.++..+.. .+...++.++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~VVl  150 (457)
T cd07108          87 LFRYFGGLAGELKGETLPFG-PDVLTYTVREPLGVVGAILPWNAPLMLAALKIAPALVAGNTVVL  150 (457)
T ss_pred             HHHHHHHHHHHhCCceeccC-CCeeEEEEeecceEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            46677777666665544332 34456789999999999999999999999999999999999984

NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.

>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1

Probab=99.53  E-value=3.1e-14  Score=102.81  Aligned_cols=66  Identities=29%  Similarity=0.334  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQV   69 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~~   69 (74)
                      ..+++|++.++++.++..+. ..+...+++++|+||+++|+|||||+.+..+++++||++||+||--
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~i~p~n~P~~~~~~~~~~ALaaGN~VVlk  160 (462)
T PF00171_consen   95 DFLRYYADAARKLAGEVLPS-DPGSRNYTRREPLGVVLIITPWNFPLYLAVWKIAPALAAGNTVVLK  160 (462)
T ss_dssp             HHHHHHHHHHHHHTEEEEEE-STTEEEEEEEEE-SEEEEEE-SSSCTHHHHHHHHHHHHTT-EEEEE
T ss_pred             hhhhhhhhcccceehhhccc-ccccccccccccccceeecccccccccccccchhhhhcccccceee
Confidence            46889999999988766565 3577889999999999999999999999999999999999999863

2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....

>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins

Probab=99.53  E-value=3.6e-14  Score=102.16  Aligned_cols=66  Identities=23%  Similarity=0.215  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHhhhcccccCCC----CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP----PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..++..+...    .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        87 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~VI~  156 (453)
T cd07094          87 DTLRLAAEEAERIRGEEIPLDATQGSDNRLAWTIREPVGVVLAITPFNFPLNLVAHKLAPAIATGCPVVL  156 (453)
T ss_pred             HHHHHHHHHHHHhcCccccccccccCCCceEEEEEeccceEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            4577788888777665433321    24466888999999999999999999999999999999999984

ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.

>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase

Probab=99.52  E-value=3.3e-14  Score=103.42  Aligned_cols=64  Identities=19%  Similarity=0.186  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHh-hhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQK-ELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~-~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++ ..++..+..  ....+++++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIl  168 (488)
T TIGR02299       104 ENFRFFADKCEEAMDGRTYPVD--THLNYTVRVPVGPVGLITPWNAPFMLSTWKIAPALAFGNTVVL  168 (488)
T ss_pred             HHHHHHHHhHHHhcCCccccCC--CceEEEEEEecceEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            346677777663 334433322  3456788999999999999999999999999999999999984

This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.

>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp

Probab=99.52  E-value=4.5e-14  Score=101.53  Aligned_cols=65  Identities=22%  Similarity=0.189  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+++..++.......+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~l~~ALaaGN~VVl  149 (452)
T cd07102          85 RARYMISIAEEALADIRVPEKDGFERYIRREPLGVVLIIAPWNYPYLTAVNAVIPALLAGNAVIL  149 (452)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCeeEEEEEEeccEEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            46677777776655433222234456889999999999999999999999999999999999984

PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.

>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins

Probab=99.52  E-value=2.6e-14  Score=103.57  Aligned_cols=42  Identities=21%  Similarity=0.151  Sum_probs=39.3

Q ss_pred             ceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          27 YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        27 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus        87 ~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  128 (439)
T cd07081          87 GGTLIIAEPIGVVASITPSTNPTSTVIFKSLISLKTRNSIIF  128 (439)
T ss_pred             CceEEEEecceEEEEECCCcchHHHHHHHHHHHHhcCCeEEE
Confidence            346899999999999999999999999999999999999984

Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.

>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA

Probab=99.52  E-value=4.5e-14  Score=103.63  Aligned_cols=66  Identities=21%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..++.......+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       135 ~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~GVV~~I~p~N~P~~~~~~~i~~ALaaGN~VVl  200 (518)
T cd07125         135 DFCRYYAAQARELFSDPELPGPTGELNGLELHGRGVFVCISPWNFPLAIFTGQIAAALAAGNTVIA  200 (518)
T ss_pred             HHHHHHHHHHHHhcCCccccCCCCceeEEEEecccEEEEECCcchHHHHHHHHHHHHHHcCCEEEE
Confidence            457788888877665432112224466889999999999999999999999999999999999874

The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.

>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like

Probab=99.52  E-value=4.7e-14  Score=101.29  Aligned_cols=65  Identities=26%  Similarity=0.298  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++++..+++..++..+...++...+.+++|+||+++|+|||||+....+++++||++||+||-
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~VIl  150 (451)
T cd07103          86 FLEWFAEEARRIYGRTIPSPAPGKRILVIKQPVGVVAAITPWNFPAAMITRKIAPALAAGCTVVL  150 (451)
T ss_pred             HHHHHHHHHHHhcCcccccCCCCcceEEEEeeceEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            45677777776666544332234567889999999999999999999999999999999999984

Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.

>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11

Probab=99.51  E-value=5.9e-14  Score=101.61  Aligned_cols=66  Identities=17%  Similarity=0.119  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCC----CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP----PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~----~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++.++++.++..+...    .+...+++++|+||+++|+|||||+.+..+++++||++||++|-
T Consensus       105 ~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~AL~aGN~vil  174 (473)
T cd07082         105 DYIRDTIEELKRLDGDSLPGDWFPGTKGKIAQVRREPLGVVLAIGPFNYPLNLTVSKLIPALIMGNTVVF  174 (473)
T ss_pred             HHHHHHHHHHHHhcCCcccccccccCCCceeEEEEecceEEEEECCcCcHHHHHHHHHHHHHHcCCEEEE
Confidence            4577888888777665433221    23456889999999999999999999999999999999999984

NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.

>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like

Probab=99.51  E-value=5.8e-14  Score=101.07  Aligned_cols=66  Identities=20%  Similarity=0.207  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHhhhcccccCC----CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP----PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+.+..++..+..    ..+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~ALaaGN~VIl  156 (452)
T cd07147          87 DTFRIAAEEATRIYGEVLPLDISARGEGRQGLVRRFPIGPVSAITPFNFPLNLVAHKVAPAIAAGCPFVL  156 (452)
T ss_pred             HHHHHHHHHHHHhCCcccccccccCCCCceeEEEEeceeEEEEEcCCCcHHHHHHHHHHHHHHcCCEEEE
Confidence            356777777766655432211    123456788999999999999999999999999999999999984

Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.

>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed

Probab=99.51  E-value=7e-14  Score=102.84  Aligned_cols=66  Identities=29%  Similarity=0.245  Sum_probs=51.9

Q ss_pred             hHHHHHHHHHHhhhcccccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++.....  ......++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       120 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~P~N~Pl~~~~~~~~~ALaaGN~VIl  187 (524)
T PRK09407        120 LTARYYARRAPKLLAPRRRAGALPVLTKTTELRQPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVL  187 (524)
T ss_pred             HHHHHHHHHHHHhhCCccccccCCCCceEEEEEecceEEEEEeCCCChHHHHHHHHHHHHHcCCEEEE
Confidence            346778888777655432211  112357889999999999999999999999999999999999984

>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional

Probab=99.51  E-value=4.8e-14  Score=106.34  Aligned_cols=66  Identities=29%  Similarity=0.170  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHhhh--------cccccCCCCC-ceeEEeeecC-ceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKEL--------AEITLDPPPN-YVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~--------~~~~~~~~~~-~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..        ++..+....+ ...++.++|+ |||++|+|||||+.+..++++|||++||+||-
T Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~GVv~~I~PwNfP~~~~~~~i~pALaaGN~VV~  181 (675)
T PRK11563        106 GTLFTYASKGRRELPNDTVLVEGEVEPLSKGGTFAGRHILTPLEGVAVHINAFNFPVWGMLEKLAPAFLAGVPAIV  181 (675)
T ss_pred             HHHHHHHHHHhhhccccccccCCccccccCCCcccceEEEeecCceEEEECCCchHHHHHHHHHHHHHHcCCeEEE
Confidence            35678888776643        3332221112 2246889997 99999999999999999999999999999984

>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins

Probab=99.51  E-value=5.4e-14  Score=101.61  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCC---CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP---PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..+.......   .....++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vvl  133 (443)
T cd07132          65 NEIKYAISNLPEWMKPEPVKKNLATLLDDVYIYKEPLGVVLIIGAWNYPLQLTLVPLVGAIAAGNCVVI  133 (443)
T ss_pred             HHHHHHHHHHHHHhCCccCCCccccCCCceEEEEecccEEEEEcCCchhHHHHHHHHHHHHHcCCEEEE
Confidence            3567777777766443221110   12346889999999999999999999999999999999999984

NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.

>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like

Probab=99.51  E-value=7.6e-14  Score=100.69  Aligned_cols=66  Identities=24%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHhhhcccccCC-C-CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP-P-PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~-~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+.+..+...... . .....+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~ALaaGN~vvl  151 (454)
T cd07101          84 IVARYYARRAERLLKPRRRRGAIPVLTRTTVNRRPKGVVGVISPWNYPLTLAVSDAIPALLAGNAVVL  151 (454)
T ss_pred             HHHHHHHHHHHHHhCCccccccCCCCceEEEEEEeccEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            346778877777655432211 1 12356889999999999999999999999999999999999984

Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).

>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN

Probab=99.50  E-value=4.5e-14  Score=104.90  Aligned_cols=65  Identities=11%  Similarity=-0.024  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhhhcccc---cCCCCC---ceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEIT---LDPPPN---YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~---~~~~~~---~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++...++.++..   +....+   ...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       156 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~P~GVv~vI~PwNfP~~~~~~~l~~ALaaGN~VVl  226 (551)
T TIGR02288       156 AVAYAYREMSRIPETAVWEKPQGKNDPLKLKKRFTIVPRGIALVIGCSTFPTWNTYPGLFASLATGNPVLV  226 (551)
T ss_pred             HHHHHHHHHHhccCcccccccCCCCCcccccceEEEEecCeEEEEcCcccHHHHHHHHHHHHHHcCCeEEE
Confidence            36677777777766533   221111   122347999999999999999999999999999999999984

This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.

>PRK11903 aldehyde dehydrogenase; Provisional

Probab=99.50  E-value=4.8e-14  Score=103.95  Aligned_cols=66  Identities=27%  Similarity=0.065  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHhhhcccccCCC--------CCceeEEeeec-CceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP--------PNYVLLENWNP-LGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~--------~~~~~~~~~~P-~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|+++++++.++......        ......+.++| +||+++|+|||||+.+..+++++||++||+||-
T Consensus       107 ~~l~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VV~  181 (521)
T PRK11903        107 FTLGYYAKLGAALGDARLLRDGEAVQLGKDPAFQGQHVLVPTRGVALFINAFNFPAWGLWEKAAPALLAGVPVIV  181 (521)
T ss_pred             HHHHHHHHHHHHcCCCcccCCCccccccccccccceEEEecCcceEEEECCcchHHHHHHHHHHHHHHcCCeEEE
Confidence            4688899888776543221111        12234678899 699999999999999999999999999999984

>cd07099 ALDH_DDALDH Methylomonas sp

Probab=99.50  E-value=7.5e-14  Score=100.42  Aligned_cols=66  Identities=26%  Similarity=0.313  Sum_probs=52.1

Q ss_pred             hHHHHHHHHHHhhhccc-ccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEI-TLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~-~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++.+.+..+.. .+..  ..+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~l~~ALaaGN~vil  152 (453)
T cd07099          84 EAIDWAARNAPRVLAPRKVPTGLLMPNKKATVEYRPYGVVGVISPWNYPLLTPMGDIIPALAAGNAVVL  152 (453)
T ss_pred             HHHHHHHHHHHHhcCCccccCcccCCCceeEEEEecceEEEEECCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            45677887777765443 2211  124467889999999999999999999999999999999999973

4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.

>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17

Probab=99.50  E-value=6.9e-14  Score=102.90  Aligned_cols=64  Identities=27%  Similarity=0.210  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecC-ceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++|++.+.+..++..+....+...+++++|+ |||++|+|||||+.+..++++||| +||+||-
T Consensus       138 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwNfP~~~~~~~~~pal-aGN~VVl  202 (522)
T cd07123         138 FLRFNVKYAEELYAQQPLSSPAGVWNRLEYRPLEGFVYAVSPFNFTAIGGNLAGAPAL-MGNVVLW  202 (522)
T ss_pred             HHHHHHHHHHHhcCccccCCCCCceeEEEEecCCceEEEECCcccHHHHHHHHHHHHH-hCCEEEE
Confidence            467788887777655433222244678999998 999999999999999999999999 6999983

Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.

>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.49  E-value=1.2e-13  Score=101.05  Aligned_cols=66  Identities=29%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHhhhcc--cccC-----CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAE--ITLD-----PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~--~~~~-----~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+.+..++  ..+.     ...+...+++|+|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       119 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~i~~ALaaGN~VIl  191 (496)
T PLN00412        119 DLISYTAEEGVRILGEGKFLVSDSFPGNERNKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNAVVL  191 (496)
T ss_pred             HHHHHHHHHHHHHhcCCcccccccCCCccCCceeEEEEecceEEEEECCCCchHHHHHHHHHHHHHcCCEEEE
Confidence            3467777766665422  2111     0112245788999999999999999999999999999999999984

>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1

Probab=99.48  E-value=1.3e-13  Score=101.88  Aligned_cols=64  Identities=22%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecC-ceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++|+++++++.++..+....+...++.++|+ ||+++|+|||||+.+..+++++|| +||+||-
T Consensus       138 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~~~~~~~a~AL-aGN~VVl  202 (533)
T TIGR01236       138 FFRFNVKYARELYEQQPSESAPGEWNRTDYRPLEGFVYAISPFNFTAIAGNLPGAPAL-MGNTVIW  202 (533)
T ss_pred             HHHHHHHHHHHhcCccccCCCCCceeEEEEecCCCEEEEEeCCchHHHHHHHHHHHHH-hCCeEEE
Confidence            467888888777665431112244678899999 999999999999999999999999 8999983

This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.

>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like

Probab=99.48  E-value=9.6e-14  Score=100.44  Aligned_cols=60  Identities=23%  Similarity=0.238  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.++++.++..     ....++.++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       104 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vv~  163 (466)
T cd07138         104 HLRAAADALKDFEFEER-----RGNSLVVREPIGVCGLITPWNWPLNQIVLKVAPALAAGCTVVL  163 (466)
T ss_pred             HHHHHHHhhhhcccccc-----CceEEEEEeecceEEEECCCccHHHHHHHHHHHHHhcCCEEEE
Confidence            45666666655543321     2245778999999999999999999999999999999999984

The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.

>KOG2452|consensus

Probab=99.48  E-value=4.4e-14  Score=104.42  Aligned_cols=61  Identities=23%  Similarity=0.359  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHhhhcccccCCC---CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcC
Q psy3658           3 KALSTSAKRIQKELAEITLDPP---PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGW   63 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~---~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaG   63 (74)
                      .++||||+|.+++.|.++|...   ......+++||+|||++|+|||||+++..||.+..|++-
T Consensus       528 ~~~ryfagwcdkiqg~tipi~~arpn~nl~lt~~epigv~g~i~pwnyplmmlswk~aaclaa~  591 (881)
T KOG2452|consen  528 QTFRYFAGWCDKIQGSTIPINQARPNRNLTLTRKEPVGVCGIIIPWNYPLMMLSWKTAACLAAQ  591 (881)
T ss_pred             hHHHHhhhhhhhccCceeccccCCCCCcceeeecCcceeEEEeccCCchHHHHHHHHHHHHHHH
Confidence            4789999999999999887642   234678999999999999999999999999999999874

>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.48  E-value=1.1e-13  Score=108.55  Aligned_cols=66  Identities=20%  Similarity=0.120  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHhhhcccccC-CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLD-PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++.... ...+..++.+++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       651 d~lr~ya~~a~~~~~~~~~l~g~~ge~n~~~~~P~GVv~~IsPwNfPlai~~~~i~aALaaGNtVIl  717 (1038)
T PRK11904        651 DFCRYYAAQARRLFGAPEKLPGPTGESNELRLHGRGVFVCISPWNFPLAIFLGQVAAALAAGNTVIA  717 (1038)
T ss_pred             HHHHHHHHHHHHhhCCCcccCCCCCceeEEEEecceEEEEECCCccHHHHHHHHHHHHHHcCCEEEe
Confidence            35688999888876543221 2235577899999999999999999999999999999999999984

>PRK15398 aldehyde dehydrogenase EutE; Provisional

Probab=99.48  E-value=9.5e-14  Score=101.23  Aligned_cols=42  Identities=21%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             ceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          27 YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        27 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...+++++|+|||++|+|||||+.+.++++++||++||+||-
T Consensus       121 ~~~~v~~~P~GVV~~I~PwN~P~~~~~~~ia~ALaaGN~VVl  162 (465)
T PRK15398        121 GLTLIEYAPFGVIGAVTPSTNPTETIINNAISMLAAGNSVVF  162 (465)
T ss_pred             ceeEEEecccEEEEEeeCCCCchHHHHHHHHHHHHhCCcEEE
Confidence            356788999999999999999999999999999999999984

>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like

Probab=99.47  E-value=8.1e-14  Score=100.63  Aligned_cols=41  Identities=22%  Similarity=0.279  Sum_probs=38.6

Q ss_pred             eeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++++|+|||++|+|||||+.+..+++++||++||++|-
T Consensus        90 ~~~~~~~PlGVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  130 (429)
T cd07121          90 LTLVEYAPFGVIGAITPSTNPTETIINNSISMLAAGNAVVF  130 (429)
T ss_pred             ceEEEEcccceEEEEccCCCchhHHHHHHHHHHHcCCCEEE
Confidence            45788999999999999999999999999999999999984

Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.

>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1

Probab=99.46  E-value=2.3e-13  Score=97.67  Aligned_cols=66  Identities=21%  Similarity=0.274  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHhhhcccccCC----CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP----PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++.+.+..++..+..    ..+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~ALaaGN~VI~  156 (453)
T cd07149          87 ETLRLSAEEAKRLAGETIPFDASPGGEGRIGFTIREPIGVVAAITPFNFPLNLVAHKVGPAIAAGNAVVL  156 (453)
T ss_pred             HHHHHHHHHHHHhcCccccccccCCCCCeeEEEEeecceEEEEECCCCChHHHHHHHHHHHHHcCCEEEE
Confidence            346677777666655433321    112345788999999999999999999999999999999999984

Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.

>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like

Probab=99.46  E-value=2.4e-13  Score=97.89  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++|++.+.+..+...+.. .+...+++++|+||+++|+|||||+....+++++||++||+||-
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~i~p~N~P~~~~~~~~~~AL~aGN~VIl  150 (455)
T cd07093          87 NFRFFADYILQLDGESYPQD-GGALNYVLRQPVGVAGLITPWNLPLMLLTWKIAPALAFGNTVVL  150 (455)
T ss_pred             HHHHHHHhHHHhCCccccCC-CCceEEEEEEeeeEEEEECCCChHHHHHHHHHHHHHhcCCEEEe
Confidence            35667776666544433322 24566789999999999999999999999999999999999984

In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.46  E-value=1.1e-13  Score=105.15  Aligned_cols=62  Identities=23%  Similarity=0.181  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhhhcccccC--CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLD--PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++|++. .+..++..+.  ...+...++.++|+|||++|+||| |+.+. +|++|||++||+||-
T Consensus       373 ~~~~~a~~-~~~~g~~~~~~~~~~~~~~~~~r~PlGVV~~I~Pwn-P~~~~-~kiapALaaGNtVVl  436 (718)
T PLN02418        373 SIRQLADM-EDPIGRVLKRTEVADGLVLEKTSCPLGVLLIIFESR-PDALV-QIASLAIRSGNGLLL  436 (718)
T ss_pred             HHHHHhcC-ccccCccccccccCCCceEEEEEEeeeEEEEEeCCC-cHHHH-HHHHHHHHhCCEEEE
Confidence            45677766 3444544331  122334688999999999999999 99999 999999999999984

>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family

Probab=99.45  E-value=1.5e-13  Score=97.80  Aligned_cols=60  Identities=13%  Similarity=-0.088  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           5 LSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         5 ~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ++++++.+.+..+...+.   +...+++++|+||+++|+|||||+. ..+++++||++||++|-
T Consensus        73 ~~~~a~~~~~~~~~~~~~---~~~~~~~~~P~Gvv~~i~p~N~P~~-~~~~~~~aL~aGN~vil  132 (397)
T cd07077          73 ERGITASVGHIQDVLLPD---NGETYVRAFPIGVTMHILPSTNPLS-GITSALRGIATRNQCIF  132 (397)
T ss_pred             HHHHHHhcCcccceEecC---CCceEEEEecceEEEEEeCCCCchH-HHHHHHHHHHcCCcEEE
Confidence            444554444443332221   2356899999999999999999999 99999999999999974

The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.

>cd07087 ALDH_F3-13-14_CALDH-like ALDH subfamily: Coniferyl aldehyde dehydrogenase, ALDH families 3, 13, and 14, and other related proteins

Probab=99.45  E-value=3.4e-13  Score=96.86  Aligned_cols=66  Identities=20%  Similarity=0.145  Sum_probs=50.3

Q ss_pred             hHHHHHHHHHHhhhccc-ccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEI-TLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~-~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..+.. ....  ..+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~n~P~~~~~~~~~~aL~aGN~vvl  133 (426)
T cd07087          65 GEIDHALKHLKKWMKPRRVSVPLLLQPAKAYVIPEPLGVVLIIGPWNYPLQLALAPLIGAIAAGNTVVL  133 (426)
T ss_pred             HHHHHHHHHHHHHhCCcccCCccccCCCceEEEEecCcEEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            45677777766554322 1111  123356889999999999999999999999999999999999984

ALDH subfamily which includes NAD(P)+-dependent, aldehyde dehydrogenase, family 3 member A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and also plant ALDH family members ALDH3F1, ALDH3H1, and ALDH3I1, fungal ALDH14 (YMR110C) and the protozoan family 13 member (ALDH13), as well as coniferyl aldehyde dehydrogenases (CALDH, EC=1.2.1.68), and other similar sequences, such as the Pseudomonas putida benzaldehyde dehydrogenase I that is involved in the metabolism of mandelate.

>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like

Probab=99.45  E-value=1.5e-13  Score=99.65  Aligned_cols=43  Identities=21%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+++++|+||++.|+|||||+.+..|++++||++||+||-
T Consensus        86 ~~~~~~~~~P~GVv~~I~pwN~P~~~~~~~~~~ALaaGN~VVl  128 (436)
T cd07122          86 EKGIVEIAEPVGVIAALIPSTNPTSTAIFKALIALKTRNAIIF  128 (436)
T ss_pred             CCCeEEEeecccEEEEEeCCCCchHHHHHHHHHHHHcCCcEEE
Confidence            3456889999999999999999999999999999999999984

Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.

>cd07134 ALDH_AlkH-like Pseudomonas putida Aldehyde dehydrogenase AlkH-like

Probab=99.44  E-value=4.2e-13  Score=96.71  Aligned_cols=65  Identities=18%  Similarity=0.148  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhhhccc-ccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEI-TLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~-~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++.+.+..+.. ....  ..+...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~ALaaGN~Vi~  133 (433)
T cd07134          66 EINHAIKHLKKWMKPKRVRTPLLLFGTKSKIRYEPKGVCLIISPWNYPFNLAFGPLVSAIAAGNTAIL  133 (433)
T ss_pred             HHHHHHHHHHHHhCCcccCCccccCCCceEEEEecCCEEEEEcCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            3455665554433321 1111  123456899999999999999999999999999999999999984

Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD.

>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like

Probab=99.44  E-value=3.5e-13  Score=96.96  Aligned_cols=43  Identities=30%  Similarity=0.430  Sum_probs=40.0

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+.+++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       105 ~~~~~~~~~P~GVv~~I~p~N~P~~~~~~~~~~ALaaGN~Vil  147 (446)
T cd07106         105 TRRVELRRKPLGVVAAIVPWNFPLLLAAWKIAPALLAGNTVVL  147 (446)
T ss_pred             CceEEEEEEcceEEEEEcCCChHHHHHHHHHHHHHHcCCEEEE
Confidence            4467899999999999999999999999999999999999984

Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.

>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like

Probab=99.42  E-value=6.5e-13  Score=96.04  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=38.5

Q ss_pred             eeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++++|+||+++|+|||||+....+++++||++||+||-
T Consensus       113 ~~~~~~~P~GVv~~I~p~n~P~~~~~~~~~~ALaaGN~VIl  153 (465)
T cd07098         113 RARVEYEPLGVVGAIVSWNYPFHNLLGPIIAALFAGNAIVV  153 (465)
T ss_pred             eeEEEEecceeEEEEcccCcHHHHHHHHHHHHHHcCCEEEE
Confidence            45788999999999999999999999999999999999984

Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.

>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain)

Probab=99.39  E-value=7.5e-13  Score=97.16  Aligned_cols=38  Identities=26%  Similarity=0.319  Sum_probs=35.9

Q ss_pred             EeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          31 ENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        31 ~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       156 ~~~~P~GVV~~I~pwN~P~~~~~~~i~~ALaaGN~VVl  193 (500)
T TIGR01238       156 FSVESRGVFVCISPWNFPLAIFTGQISAALAAGNTVIA  193 (500)
T ss_pred             eeccCcceEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            36899999999999999999999999999999999984

This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.

>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like

Probab=99.37  E-value=9.8e-13  Score=96.02  Aligned_cols=39  Identities=36%  Similarity=0.716  Sum_probs=36.5

Q ss_pred             EEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          30 LENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        30 ~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +..++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       142 ~~~~~P~GVV~~I~PwN~P~~~~~~~i~~ALaaGN~VVl  180 (480)
T cd07111         142 LAGWKPVGVVGQIVPWNFPLLMLAWKICPALAMGNTVVL  180 (480)
T ss_pred             cccceecceEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            456899999999999999999999999999999999984

Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.

>cd07129 ALDH_KGSADH Alpha-Ketoglutaric Semialdehyde Dehydrogenase

Probab=99.37  E-value=1.5e-12  Score=94.38  Aligned_cols=41  Identities=34%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             eeEEeeecCceEEEEecCCccHHh--HHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAV--YGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~--~~~k~~~ALaaGNtvV~   68 (74)
                      ..++.++|+|||++|+|||||+.+  ..+++++||++||+||-
T Consensus        98 ~~~~~~~P~GvV~~I~p~N~P~~~~~~~~~~a~ALaaGN~VVl  140 (454)
T cd07129          98 DLRRMLVPLGPVAVFGASNFPLAFSVAGGDTASALAAGCPVVV  140 (454)
T ss_pred             cceEEeeccceEEEECCCCCchhhhhhhhhHHHHHHcCCeEEE
Confidence            357889999999999999999988  55899999999999984

Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.37  E-value=8.9e-13  Score=100.24  Aligned_cols=40  Identities=25%  Similarity=0.190  Sum_probs=36.1

Q ss_pred             ceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          27 YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        27 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...+++++|+|||++|+||| |+.+ .+++++||++||++|-
T Consensus       389 ~~~~~~~~P~GVV~~I~PwN-P~~~-~~~~~~ALaaGN~vvl  428 (715)
T TIGR01092       389 LILEKTSVPIGVLLIVFESR-PDAL-VQIASLAIRSGNGLLL  428 (715)
T ss_pred             ceeEEEEeeceEEEEEeCCC-hHHH-HHHHHHHHHhCCEEEE
Confidence            34578999999999999999 9999 6999999999999973

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.37  E-value=9.4e-13  Score=105.11  Aligned_cols=38  Identities=34%  Similarity=0.496  Sum_probs=36.1

Q ss_pred             EeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          31 ENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        31 ~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++|+||+++|+|||||+.++.+++++||++||+||.
T Consensus       764 ~~~~PlGVV~~IsPWNFPlai~~g~iaaALaAGN~VV~  801 (1318)
T PRK11809        764 DTHRPLGPVVCISPWNFPLAIFTGQVAAALAAGNSVLA  801 (1318)
T ss_pred             ceeecccEEEEECCCccHHHHHHHHHHHHHHcCCeEEE
Confidence            46899999999999999999999999999999999984

>TIGR00407 proA gamma-glutamyl phosphate reductase

Probab=99.36  E-value=9.4e-13  Score=94.55  Aligned_cols=62  Identities=18%  Similarity=0.127  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhhhcccccC--CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLD--PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++|++.++.. ++..+.  ..++...+++++|+|||++|+||| | .+..+++++||++||++|-
T Consensus        71 ~~~~~a~~a~~~-g~~~~~~~~~~~~~~~~~~~PlGVV~~I~pw~-p-~~~~~~~~~ALaaGN~vVl  134 (398)
T TIGR00407        71 GVKDVIELADPV-GKVIDGRELDSGLTLERVRVPLGVLGVIYEAR-P-NVTVDIASLCLKTGNAVIL  134 (398)
T ss_pred             HHHHHhcCCCCC-cccccceecCCCceEEEEEeCcEEEEEEeCCC-c-hHHHHHHHHHHHhCCeEEE
Confidence            456666666543 443332  113456788999999999999998 7 6788999999999999983

The prosite motif begins at residue 332 of the seed alignment although not all of the members of the family exactly obey the motif.

>cd07084 ALDH_KGSADH-like ALDH subfamily: NAD(P)+-dependent alpha-ketoglutaric semialdehyde dehydrogenases and plant delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12-like

Probab=99.36  E-value=2.3e-12  Score=93.18  Aligned_cols=65  Identities=25%  Similarity=0.038  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhhh--cccccC-C-CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKEL--AEITLD-P-PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~--~~~~~~-~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++|++.+.+..  ++.... . ......+.+++|+|||++|+|||||+.+..+++++||++||++|-
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~p~N~P~~~~~~~~~~AL~aGN~vvl  133 (442)
T cd07084          65 QLRARAFVIYSYRIPHEPGNHLGQGLKQQSHGYRWPYGPVLVIGAFNFPLWIPLLQLAGALAMGNPVIV  133 (442)
T ss_pred             HHHHHHHHHHhccccccccccCCCCccccceEEeecceeEEEEcCCccHhHHHHHHHHHHHHcCCeEEE
Confidence            4677777776531  211111 1 112456889999999999999999999999999999999999874

ALDH subfamily which includes the NAD(P)+-dependent, alpha-ketoglutaric semialdehyde dehydrogenases (KGSADH, EC 1.2.1.26); plant delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12 ), ALDH family 12; the N-terminal domain of the MaoC (monoamine oxidase C) dehydratase regulatory protein; and orthologs of MaoC, PaaZ and PaaN, which are putative ring-opening enzymes of the aerobic phenylacetic acid catabolic pathway.

>cd07078 ALDH NAD(P)+ dependent aldehyde dehydrogenase family

Probab=99.30  E-value=9.2e-12  Score=88.68  Aligned_cols=66  Identities=27%  Similarity=0.449  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++.++++.+........+...+.+++|+||+++|+|||||+....+++++||++||++|-
T Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~i~p~N~P~~~~~~~~~~AL~aGN~vil  129 (432)
T cd07078          64 DTFRYYAGLARRLHGEVIPSPDPGELAIVRREPLGVVGAITPWNFPLLLAAWKLAPALAAGNTVVL  129 (432)
T ss_pred             HHHHHHHHHHHHhcCccccccCCCceEEEEEeecceEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            355666666666655433222234567889999999999999999999999999999999999984

The aldehyde dehydrogenase family (ALDH) of NAD(P)+ dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or as osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydride transfer

>cd06534 ALDH-SF NAD(P)+-dependent aldehyde dehydrogenase superfamily

Probab=99.30  E-value=1.1e-11  Score=86.73  Aligned_cols=66  Identities=27%  Similarity=0.378  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.++++++.+++..+...+....+...+++++|+||+++|.|||||+....+++++||++||++|-
T Consensus        60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Gvv~~i~p~n~p~~~~~~~~~~aL~~GN~vil  125 (367)
T cd06534          60 DTFRYAAGLADKLGGPELPSPDPGGEAYVRREPLGVVGVITPWNFPLLLAAWKLAPALAAGNTVVL  125 (367)
T ss_pred             HHHHHHHHHHHHhcCCcccccCCCceeEEEEEeeeEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            356677777776655333322335567899999999999999999999999999999999999884

The aldehyde dehydrogenase superfamily (ALDH-SF) of NAD(P)+-dependent enzymes, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. Besides aldehyde detoxification, many ALDH isozymes possess multiple additional catalytic and non-catalytic functions such as participating in metabolic pathways, or as binding proteins, or osmoregulants, to mention a few. The enzyme has three domains, a NAD(P)+ cofactor-binding domain, a catalytic domain, and a bridging domain; and the active enzyme is generally either homodimeric or homotetrameric. The catalytic mechanism is proposed to involve cofactor binding, resulting in a conformational change and activation of an invariant catalytic cysteine nucleophile. The cysteine and aldehyde substrate form an oxyanion thiohemiacetal intermediate resulting in hydri

>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating)

Probab=99.29  E-value=4.3e-12  Score=93.04  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=39.6

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+..++|+||+++|+|||||+.+..+|+++||++||+||-
T Consensus        95 ~~~~~~~~~PlGVV~~I~P~n~P~~~~~~k~~~AL~aGNaVIl  137 (488)
T TIGR02518        95 EKKVIEIAVPVGVVAGLIPSTNPTSTAIYKTLISIKARNAIVF  137 (488)
T ss_pred             CcceEEEEecceEEEEEcccCChHHHHHHHHHHHHHcCCcEEE
Confidence            4456788999999999999999999999999999999999984

>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=99.28  E-value=5.6e-12  Score=100.19  Aligned_cols=38  Identities=34%  Similarity=0.454  Sum_probs=35.7

Q ss_pred             EeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          31 ENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        31 ~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       672 ~~~~P~GVv~~IsPwNfPlai~~g~i~aALaaGN~VV~  709 (1208)
T PRK11905        672 PGHKPLGPVVCISPWNFPLAIFTGQIAAALVAGNTVLA  709 (1208)
T ss_pred             ceecCccEEEEEcCCcCHHHHHHHHHHHHHHcCCEEEE
Confidence            35789999999999999999999999999999999984

>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional

Probab=99.28  E-value=1.1e-11  Score=95.52  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=39.6

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        99 ~~~~~~~~~P~GVv~~I~pwn~P~~~~~~~~~~ALaaGN~vVl  141 (862)
T PRK13805         99 EFGIIEIAEPVGVIAGITPTTNPTSTAIFKALIALKTRNPIIF  141 (862)
T ss_pred             CCCeEEEeecceEEEEEeCCCChhHHHHHHHHHHHHhCCcEEE
Confidence            3456889999999999999999999999999999999999984

>KOG2456|consensus

Probab=99.26  E-value=1e-11  Score=89.83  Aligned_cols=41  Identities=24%  Similarity=0.236  Sum_probs=38.9

Q ss_pred             eeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++..+|+|||++|+|||||+.+....+++||+|||+||-
T Consensus        97 k~~I~~~p~GvVLiI~~wNyP~~L~l~PligAiAAGN~VVl  137 (477)
T KOG2456|consen   97 KAYIEKEPLGVVLIIGPWNYPLNLTLVPLIGAIAAGNAVVL  137 (477)
T ss_pred             ceeEEecCCceEEEEccCCCcceeehhhhhhhhhcCCEEEe
Confidence            56899999999999999999999999999999999999983

>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like

Probab=99.25  E-value=2.1e-11  Score=90.77  Aligned_cols=39  Identities=18%  Similarity=-0.047  Sum_probs=36.5

Q ss_pred             EEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          30 LENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        30 ~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...++|+||+++|+|||||+.+..++++++|++||+||-
T Consensus       188 ~~~~~P~GVv~vI~p~nfP~~~~~~~i~~ALaaGN~VVv  226 (549)
T cd07127         188 TFTVVPRGVALVIGCSTFPTWNGYPGLFASLATGNPVIV  226 (549)
T ss_pred             eeEEecccEEEEEeCcCChHHHHHHHHHHHHhcCCeEEE
Confidence            347899999999999999999999999999999999984

Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.

>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]

Probab=99.24  E-value=7.1e-12  Score=93.71  Aligned_cols=38  Identities=34%  Similarity=0.440  Sum_probs=35.3

Q ss_pred             EeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          31 ENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        31 ~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++|+|++..|+|||||+.++..+++.||++||+|+.
T Consensus       232 ~~~~~~G~vVcISPWNFPLAIFtGqiaAAL~aGN~VlA  269 (769)
T COG4230         232 LTHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLA  269 (769)
T ss_pred             cccCCCCcEEEECCCCchHHHHHhHHHHHHHcCCcccc
Confidence            35679999999999999999999999999999999974

>PRK00197 proA gamma-glutamyl phosphate reductase; Provisional

Probab=99.18  E-value=3.6e-11  Score=86.53  Aligned_cols=39  Identities=28%  Similarity=0.251  Sum_probs=35.2

Q ss_pred             eeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++++|+|||++|+||| | .+..+++++||++||++|-
T Consensus       108 ~~~~~~~PlGVv~~I~p~p-~-~~~~~~~~~ALaaGN~vVl  146 (417)
T PRK00197        108 RIGRVRVPLGVIGVIYESR-P-NVTVDAAALCLKSGNAVIL  146 (417)
T ss_pred             eEEEEecCceEEEEEcCCC-c-hHHHHHHHHHHHhCCeEEE
Confidence            5788999999999999987 4 6889999999999999983

>cd07079 ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19

Probab=99.11  E-value=9.8e-11  Score=84.04  Aligned_cols=40  Identities=30%  Similarity=0.248  Sum_probs=35.3

Q ss_pred             ceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          27 YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        27 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...+++++|+|||++|+|| +| .+..+|+++||++||+||-
T Consensus       101 ~~~~~~~~PlGVV~~I~p~-~p-~~~~~~~~~ALaaGN~vVl  140 (406)
T cd07079         101 LQIEKVRVPLGVIGIIYES-RP-NVTVDAAALCLKSGNAVIL  140 (406)
T ss_pred             cceeEEecceEEEEEecCC-Cc-chHHHHHHHHHHhCCEEEE
Confidence            3567899999999999997 56 6889999999999999984

Gamma-glutamyl phosphate reductase (GPR), a L-proline biosynthetic pathway (PBP) enzyme that catalyzes the NADPH dependent reduction of L-gamma-glutamyl 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The glutamate route of the PBP involves two enzymatic steps catalyzed by gamma-glutamyl kinase (GK, EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are fused into the bifunctional enzyme, ProA or delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in plants and animals, whereas they are separate enzymes in bacteria and yeast. In humans, the P5CS (ALDH18A1), an inner mitochondrial membrane enzyme, is essential to the de novo synthesis of the amino acids proline and arginine. Tomato (Lycopersicon esculentum) has both the prokaryotic-like polycistronic operons encoding GK and GPR (PRO1, ALDH19) and the full-length, bifunctional P5CS (PRO2, ALDH18B1).

>cd07080 ALDH_Acyl-CoA-Red_LuxC Acyl-CoA reductase LuxC

Probab=98.93  E-value=9.9e-10  Score=79.28  Aligned_cols=40  Identities=25%  Similarity=0.080  Sum_probs=36.9

Q ss_pred             eeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++++|+|++++|+|||||+ +..+++++||++||++|-
T Consensus       105 ~~~~~~~P~Gvv~~I~p~N~P~-l~~~s~~~aLlaGN~~il  144 (422)
T cd07080         105 GGYIRAQPRGLVVHIIAGNVPL-LPVWSIVRGLLVKNVNLL  144 (422)
T ss_pred             CCeeEEcCCceEEEEccCCccc-cHHHHHHHHHHhcCceEE
Confidence            4578999999999999999999 899999999999999863

Acyl-CoA reductase, LuxC, (EC=1.2.1.50) is the fatty acid reductase enzyme responsible for synthesis of the aldehyde substrate for the luminescent reaction catalyzed by luciferase. The fatty acid reductase, a luminescence-specific, multienzyme complex (LuxCDE), reduces myristic acid to generate the long chain fatty aldehyde required for the luciferase-catalyzed reaction resulting in the emission of blue-green light. Mutational studies of conserved cysteines of LuxC revealed that the cysteine which aligns with the catalytic cysteine conserved throughout the ALDH superfamily is the LuxC acylation site. This CD is composed of mainly bacterial sequences but also includes a few archaeal sequences similar to the Methanospirillum hungateiacyl acyl-CoA reductase RfbN.

>KOG2454|consensus

Probab=98.79  E-value=7.1e-09  Score=75.50  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=38.4

Q ss_pred             eeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++||+||.++|.|||||+......+..||-+||.+|-
T Consensus       181 g~~v~yePLGVI~aiVsWNYPfHN~lgPiiaAlFsGNaIVv  221 (583)
T KOG2454|consen  181 GSRVEYEPLGVIGAIVSWNYPFHNILGPIIAALFSGNAIVV  221 (583)
T ss_pred             cceEEEeecceEEEeeecCCchhhhhhHHHHHHhcCCeEEE
Confidence            35789999999999999999999999999999999999874

>KOG2453|consensus

Probab=98.35  E-value=1.9e-07  Score=67.15  Aligned_cols=61  Identities=46%  Similarity=0.737  Sum_probs=53.6

Q ss_pred             HHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           8 SAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         8 ~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+..+.+.|..+|++.+++.....+.|+|+|+.|+.||||....-|.-+-++.+||+|+-
T Consensus       126 avglsr~l~g~i~pserpghalleqwnplg~vgvitafnfpcavygwnnaiaMv~gncVvW  186 (507)
T KOG2453|consen  126 AVGLSRSLEGKIFPSERPGHALLEQWNPLGVVGVITAFNFPCAVYGWNNAIAMVCGNCVVW  186 (507)
T ss_pred             hhhhhhhhCCcccCCCCCchhHHHhcCCcceEEEEEeccCCceeeccCchhhhhhcceeEe
Confidence            3456677888888887777777889999999999999999999999999999999999873

>KOG2455|consensus

Probab=97.71  E-value=3.5e-05  Score=57.03  Aligned_cols=64  Identities=25%  Similarity=0.179  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEeeecC-ceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      -||+++..+..+.+.+......+..+..+++|+ |-|++|+||||--.-.....+||| +||+|+-
T Consensus       165 f~R~na~ya~eL~~~qpi~~~~~t~ns~~yRpleGFVaAisPFnftAI~gnLa~aPaL-MGN~VLw  229 (561)
T KOG2455|consen  165 FFRFNAKYASELYAQQPISQTKGTWNSMEYRPLEGFVAAISPFNFTAIGGNLAGAPAL-MGNVVLW  229 (561)
T ss_pred             HHHHhHHHHHHhhhcCCccccCCCCcceeeccccceeEEecccceeeeccccccChhh-hcceeee
Confidence            367788888888776544434455677888897 999999999997544444445554 7999863

>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed

Probab=96.90  E-value=0.0018  Score=52.57  Aligned_cols=42  Identities=21%  Similarity=0.077  Sum_probs=37.2

Q ss_pred             CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          24 PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        24 ~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +++..+....+|.|+++.|+|||   .....+++.||++||+++.
T Consensus      1067 PTGEsN~L~l~~RG~vlcisp~~---~~~l~Qi~AALaaGn~vi~ 1108 (1208)
T PRK11905       1067 PTGESNLLSLHPRGRVLCVADTE---EALLRQLAAALATGNVAVV 1108 (1208)
T ss_pred             CCCcceeEEecCCceEEEECCcH---HHHHHHHHHHHHhCCEEEE
Confidence            35778899999999999999999   5677899999999999874

>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins

Probab=93.14  E-value=0.1  Score=37.88  Aligned_cols=38  Identities=24%  Similarity=0.005  Sum_probs=34.2

Q ss_pred             eEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEE
Q psy3658          29 LLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLG   67 (74)
Q Consensus        29 ~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV   67 (74)
                      .+.++.|.|++.+|.|-|-|. +.++.+.-+|.+||..|
T Consensus        81 ~~~~~~p~g~v~Hi~agNvp~-~~~~S~~~~lL~gn~ni  118 (399)
T PF05893_consen   81 GYVRAFPRGLVFHIAAGNVPL-VGFYSLVRGLLSGNANI  118 (399)
T ss_pred             chhhccCCceEEEEcCCCccc-hHHHHHHHHHHhCCceE
Confidence            577899999999999999997 77788999999999875

The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	74
2jg7_A	510	Crystal Structure Of Seabream Antiquitin And Elucid		2e-11
2j6l_A	500	Structure Of Aminoadipate-Semialdehyde Dehydrogenas		1e-10
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-07
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		6e-06

>pdb|2JG7|A Chain A, Crystal Structure Of Seabream Antiquitin And Elucidation Of Its Substrate Specificity Length = 510

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)
Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           P + L+E WNP+G+VGII+AFNFPVAVYGWN AIAL
Sbjct: 145 PGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAL 180

>pdb|2J6L|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase Length = 500

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%), Gaps = 4/45 (8%)
Query: 27  YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQVAL 71
           + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+    + G V L
Sbjct: 149 HALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM----ICGNVCL 189

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 24/25 (96%)
Query: 2  SKALSTSAKRIQKELAEITLDPPPN 26
          SK LSTSAKRIQKELA+ITLDPPPN
Sbjct: 43 SKLLSTSAKRIQKELADITLDPPPN 67

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 6  STSAKRIQKELAEITLDPPPN 26
          STSAKRIQKELAEITLDPPPN
Sbjct: 2  STSAKRIQKELAEITLDPPPN 22

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	74
2j6l_A	500	Aldehyde dehydrogenase family 7 member A1; NAD, re	1e-16
4f9i_A	1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	9e-07
3qan_A	538	1-pyrroline-5-carboxylate dehydrogenase 1; proline	3e-06
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	9e-06
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	9e-06
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	1e-05
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	2e-05
1uzb_A	516	1-pyrroline-5-carboxylate dehydrogenase; oxidoredu	2e-05
3prl_A	505	NADP-dependent glyceraldehyde-3-phosphate dehydro;	3e-05
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	3e-05
1ez0_A	510	ALDH, aldehyde dehydrogenase; nucleotide binding d	3e-05
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	4e-05
1euh_A	475	NADP dependent non phosphorylating glyceraldehyde-	4e-05
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	4e-05
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	5e-05
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	6e-05
3pqa_A	486	Lactaldehyde dehydrogenase; structural genomics, p	7e-05
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	8e-05
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	9e-05
3lns_A	457	Benzaldehyde dehydrogenase; oxidoreductase, NADP+,	1e-04
3r64_A	508	NAD dependent benzaldehyde dehydrogenase; structur	1e-04
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	1e-04
2y53_A	534	Aldehyde dehydrogenase (BOX pathway); oxidoreducta	1e-04
3r31_A	517	BADH, betaine aldehyde dehydrogenase; structural g	1e-04
3v4c_A	528	Aldehyde dehydrogenase (NADP+); structural genomic	1e-04
3sza_A	469	Aldehyde dehydrogenase, dimeric NADP-preferring; A	1e-04
1t90_A	486	MMSDH, probable methylmalonate-semialdehyde dehydr	2e-04
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	2e-04
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	2e-04
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-04
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	2e-04
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-04
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	3e-04
3k9d_A	464	LMO1179 protein, aldehyde dehydrogenase; structura	3e-04
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-04
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	3e-04
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	3e-04
3haz_A	1001	Proline dehydrogenase; proline utilization A, PUTA	4e-04
4e4g_A	521	Methylmalonate-semialdehyde dehydrogenase; structu	4e-04
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	4e-04
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-04
1uxt_A	501	Glyceraldehyde-3-phosphate dehydrogenase (NADP+);	5e-04
3my7_A	452	Alcohol dehydrogenase/acetaldehyde dehydrogenase;	5e-04
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	5e-04
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	5e-04
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	6e-04
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	7e-04
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	7e-04
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	8e-04
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	8e-04

>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* Length = 500

 Score = 71.0 bits (175), Expect = 1e-16
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             + L+E WNP+G+VGII+AFNFPVAVYGWN AIA+
Sbjct: 147 SGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAM 182

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens} Length = 1026

 Score = 43.1 bits (102), Expect = 9e-07
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 9   AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           A+ + +      +   P  +    + P GV  +I+ +NFP+A+    A+ A+
Sbjct: 640 AREMIRLGQPQRVGHAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMASAAI 691

>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A Length = 538

 Score = 41.8 bits (99), Expect = 3e-06
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 9   AKRIQKELAEITLDPPP---NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           A+++ +      +   P   N        P+GV   IS +NF +A+    A   +
Sbjct: 146 ARQMIELNRGKEILSRPGEQNRYFYT---PMGVTVTISPWNFALAIMVGTAVAPI 197

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 40.1 bits (94), Expect = 9e-06
 Identities = 30/62 (48%), Positives = 33/62 (53%), Gaps = 19/62 (30%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIA 59
          SK LSTSAKRIQKELA+ITLDPPPN                SA   P    +Y W + I 
Sbjct: 43 SKLLSTSAKRIQKELADITLDPPPN---------------CSA--GPKGDNIYEWRSTIL 85

Query: 60 LP 61
           P
Sbjct: 86 GP 87

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 40.1 bits (94), Expect = 9e-06
 Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 15/56 (26%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNA 56
          +   LS +  R++++L  + L P                  ++    P +     +
Sbjct: 23 IQPNLSAARIRLKRDLDSLDLPPTVT---------------LNVITSPDSADRSQS 63

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 19/58 (32%)

Query: 6  STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
          + + KRI KEL ++  DPP                  SA   PV   ++ W A I  P
Sbjct: 2  AMALKRIHKELNDLARDPPAQ---------------CSA--GPVGDDMFHWQATIMGP 42

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 39.4 bits (92), Expect = 2e-05
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYV 28
           +A +T+ +R++++   I  DP P   
Sbjct: 9  KRAPTTATQRLKQDYLRIKKDPVPYIC 35

>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A* Length = 516

 Score = 39.5 bits (93), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 19  ITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           + + P P       + PLG   +I+ +NFPVA++       +
Sbjct: 157 VEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPV 198

>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A* Length = 505

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 9   AKRIQKEL--AEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           A R+  E    +         + L    PLGVV  IS FN+PV +     A AL
Sbjct: 124 ALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKIAPAL 177

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 38.5 bits (90), Expect = 3e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 17/59 (28%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAI 58
            ++++  KR+QKEL  +  DPPP                ++     V   +  W   +
Sbjct: 17 RGSMASMQKRLQKELLALQNDPPPG---------------MTLNEKSVQNSITQWIVDM 60

>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A* Length = 510

 Score = 38.8 bits (91), Expect = 3e-05
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 23  PPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 60
           P P   +      LG V +  A NFP+A    G + A AL
Sbjct: 124 PLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASAL 163

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 38.2 bits (89), Expect = 4e-05
 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 20/63 (31%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA---VYGWNAAI 58
          S  +   +  ++++LAE+  +P                   SA    +    +Y W   I
Sbjct: 12 SGLVPRGSLLLRRQLAELNKNPVEG---------------FSA--GLIDDNDLYRWEVLI 54

Query: 59 ALP 61
            P
Sbjct: 55 IGP 57

>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A* Length = 475

 Score = 38.7 bits (91), Expect = 4e-05
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 9   AKRIQKEL--AEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             R++ E+             + +    P+G+V  IS FN+PV + G   A AL
Sbjct: 115 GLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPAL 168

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPN 26
          ++ +S   K + KE+AE+  + P  
Sbjct: 9  TRRVSVRDKLLVKEVAELEANLPCT 33

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 37.7 bits (88), Expect = 5e-05
 Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 15/60 (25%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
             L  +  RIQKEL     +PP N                +    P  +  W       
Sbjct: 15 KYNLGNANYRIQKELNNFLKNPPIN---------------CTIDVHPSNIRIWIVQYVGL 59

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 37.2 bits (87), Expect = 6e-05
 Identities = 10/60 (16%), Positives = 15/60 (25%), Gaps = 19/60 (31%)

Query: 4  ALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
           +  +  RIQKEL     +PP N                +         +  W       
Sbjct: 3  NMGNANYRIQKELHNFLNNPPIN---------------CTL--DVHPNNIRIWIVKYVGL 45

>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A* Length = 486

 Score = 37.9 bits (89), Expect = 7e-05
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 9   AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
            K  + E+      P  + ++     P+G+VG I+ FNFP+ +     A A+
Sbjct: 109 VKEHRDEVI-----PSDDRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPAI 155

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 37.2 bits (87), Expect = 8e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 19/62 (30%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIA 59
          SK   + +KR+Q+EL  + +   P                I+A  FP    ++ W A + 
Sbjct: 4  SKERHSVSKRLQQELRTLLMSGDPG---------------ITA--FPDGDNLFKWVATLD 46

Query: 60 LP 61
           P
Sbjct: 47 GP 48

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 37.5 bits (87), Expect = 9e-05
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 6  STSAKRIQKELAEITLDPPPN 26
          S+ AKRI KE+  +  DP  +
Sbjct: 1  SSRAKRIMKEIQAVKDDPAAH 21

>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A* Length = 457

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 35  PLGVVGIISAFNFPV 49
           P GV  II  FN+PV
Sbjct: 130 PYGVTYIIGPFNYPV 144

>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum} Length = 508

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 9   AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
             R+   ++        N V        GVVG+IS +NFP+ +   + A AL
Sbjct: 125 PGRVHGRISPSNTPGKENRVYRV---AKGVVGVISPWNFPLNLSIRSVAPAL 173

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 19/58 (32%)

Query: 6  STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
          S + KRI KEL ++  DPP                  SA   PV   ++ W A I  P
Sbjct: 18 SMALKRIHKELNDLARDPPAQ---------------CSA--GPVGDDMFHWQATIMGP 58

>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A* Length = 534

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 26  NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
            +VL       GV   I+AFNFP       AA AL
Sbjct: 145 QHVLSP---TRGVALFINAFNFPSWGLWEKAAPAL 176

>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens} Length = 517

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 19  ITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           I L     Y       PLGV   I A+N+P  +  W AA AL
Sbjct: 137 IPLGGDFAYTKRV---PLGVCVGIGAWNYPQQIACWKAAPAL 175

>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti} Length = 528

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 23  PPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 60
           P P   +     P+G V +  A NFP+A    G + A AL
Sbjct: 157 PAPRQEIRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAAL 196

>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} PDB: 3szb_A* 1ad3_A* Length = 469

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 35  PLGVVGIISAFNFPV 49
           PLGVV +I  +N+P 
Sbjct: 120 PLGVVLVIGTWNYPF 134

>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis} Length = 486

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 35  PLGVVGIISAFNFPVAVYGWNAAIAL 60
           P+GVVG I+ FNFP+ V  W   +A+
Sbjct: 141 PIGVVGGIAPFNFPMMVPCWMFPMAI 166

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 20/64 (31%)

Query: 1  MSKALSTSA-KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAA 57
                  A KRI KEL +++ DPP N                SA   PV   ++ W A 
Sbjct: 14 RENLYFQGALKRINKELNDLSKDPPTN---------------CSA--GPVGDDMFHWQAT 56

Query: 58 IALP 61
          I  P
Sbjct: 57 IMGP 60

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 20/59 (33%)

Query: 6  STSA-KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIALP 61
          S  A KRIQKEL ++  DPP                  SA   PV   ++ W A I  P
Sbjct: 2  SHMALKRIQKELQDLGRDPPAQ---------------CSA--GPVGDDLFHWQATIMGP 43

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 6  STSAKRIQKELAEITLDPPPN 26
            ++ R+ KEL ++   PPP 
Sbjct: 3  HMASMRVVKELEDLQKKPPPY 23

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 18/61 (29%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
          MS   + + KR+ ++   +  DPP                 IS       +  WNA I  
Sbjct: 1  MS---TPARKRLMRDFKRLQQDPPAG---------------ISGAPQDNNIMLWNAVIFG 42

Query: 61 P 61
          P
Sbjct: 43 P 43

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 19/62 (30%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIA 59
            A     KR+Q+EL  + +                    ISA  FP +  ++ W   I 
Sbjct: 25 GAARGPVGKRLQQELMTLMMSGDKG---------------ISA--FPESDNLFKWVGTIH 67

Query: 60 LP 61
            
Sbjct: 68 GA 69

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 7  TSAKRIQKELAEITLDPPPN 26
          + AKRI KE+  +  DP  +
Sbjct: 1  SRAKRIMKEIQAVKDDPAAH 20

>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes} Length = 464

 Score = 36.2 bits (84), Expect = 3e-04
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
               ++E   PLGVV  +     P +   +   I++
Sbjct: 98  NEKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISI 133

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGII 42
          SK  S +  RIQK++ E+ L    +    +  + L    +I
Sbjct: 21 SKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI 61

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 6  STSAKRIQKELAEITLDPPPN 26
          ++  KRI KE  ++  DP P 
Sbjct: 4  ASLPKRIIKETEKLVSDPVPG 24

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPN 26
          +    S    R+QKEL +I  +    
Sbjct: 17 LYFQGSKELLRLQKELKDIENENVQE 42

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110} Length = 1001

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 18  EITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           E  +  P            GV   IS +NFP+A++      AL
Sbjct: 632 ETAMPGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAAL 674

>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti} Length = 521

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 35  PLGVVGIISAFNFPVAVYGWNAAIAL 60
           P+G+   I+ FNFP  +  W  A A+
Sbjct: 162 PVGIGAGITPFNFPGMIPMWMFAPAI 187

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 15/56 (26%)

Query: 6  STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
             A R+++EL  +  +PPP                I+ +     +    A I   
Sbjct: 3  MQRASRLKRELHMLATEPPPG---------------ITCWQDKDQMDDLRAQILGG 43

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 18/61 (29%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
          MS   + + +R+ ++   +  D PP                +SA   P  V  WNA I  
Sbjct: 1  MS---TPARRRLMRDFKRMKEDAPPG---------------VSASPLPDNVMVWNAMIIG 42

Query: 61 P 61
          P
Sbjct: 43 P 43

>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A* Length = 501

 Score = 35.6 bits (83), Expect = 5e-04
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 9   AKRIQKELAEITLDPPPN------YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
            K+I  +   I  D   +       V  E   PLGVV  I+ FN+P+         + 
Sbjct: 130 LKKIGGDY--IPGDWTYDTLETEGLVRRE---PLGVVAAITPFNYPLFDAVNKITYSF 182

>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus} Length = 452

 Score = 35.3 bits (82), Expect = 5e-04
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 25  PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
            N   +    P+G++  I     P +   + + I+L
Sbjct: 93  DNLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISL 128

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 34.9 bits (81), Expect = 5e-04
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 7  TSAKRIQKELAEITLDPPPN 26
           +++R+ KEL EI      N
Sbjct: 2  AASRRLMKELEEIRKCGMKN 21

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 34.9 bits (81), Expect = 5e-04
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPN 26
          +        + + KE+  +T DPP  
Sbjct: 7  VENLPPHIIRLVYKEVTTLTADPPDG 32

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 34.9 bits (81), Expect = 6e-04
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 20/61 (32%)

Query: 4  ALSTSA-KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAIAL 60
          A S    +RI KE   +  +P P                I A   P       ++  IA 
Sbjct: 1  AGSAGLPRRIIKETQRLLAEPVPG---------------IKA--EPDESNARYFHVVIAG 43

Query: 61 P 61
          P
Sbjct: 44 P 44

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 34.6 bits (80), Expect = 7e-04
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 23/64 (35%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA---VYGWNAA 57
          MS    T+ KR+ KEL ++  D PP                I A   P +   ++ W+  
Sbjct: 1  MS---KTAQKRLLKELQQLIKDSPPG---------------IVA--GPKSENNIFIWDCL 40

Query: 58 IALP 61
          I  P
Sbjct: 41 IQGP 44

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 34.6 bits (80), Expect = 7e-04
 Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 19/60 (31%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA--VYGWNAAI 58
                 +   + ++  ++  +                   I+A   PV+  +  W   I
Sbjct: 17 RGSMHGRAYLLLHRDFCDLKENNYKG---------------ITA--KPVSEDMMEWEVEI 59

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 34.7 bits (80), Expect = 8e-04
 Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 20/59 (33%)

Query: 6  STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVA---VYGWNAAIALP 61
           +S K +  EL  +  +P                         V    +Y W  AI  P
Sbjct: 6  PSSQKALLLELKGLQEEPVEG---------------FRV--TLVDEGDLYNWEVAIFGP 47

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 34.3 bits (79), Expect = 8e-04
 Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 6  STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
          + S KRI K+L  +  +   N     + +P               +Y W   +  P
Sbjct: 7  NISNKRIIKDLKLLLEEVDANNEANSSGSP---HSTAIFSVDTDTIYNWILKVKAP 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
2wme_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	99.71
3ifg_A	484	Succinate-semialdehyde dehydrogenase (NADP+); niai	99.7
3ed6_A	520	Betaine aldehyde dehydrogenase; structural genomic	99.7
3ek1_A	504	Aldehyde dehydrogenase; ssgcid, oxidoreductase, st	99.7
2o2p_A	517	Formyltetrahydrofolate dehydrogenase; aldehyde deh	99.69
3u4j_A	528	NAD-dependent aldehyde dehydrogenase; PSI-biology,	99.69
4f3x_A	498	Putative aldehyde dehydrogenase; structural genomi	99.68
1uzb_A	516	1-pyrroline-5-carboxylate dehydrogenase; oxidoredu	99.68
2w8n_A	487	Succinate-semialdehyde dehydrogenase, mitochondria	99.68
2d4e_A	515	5-carboxymethyl-2-hydroxymuconate semialdehyde deh	99.68
1bxs_A	501	Aldehyde dehydrogenase; retinal, class 1, tetramer	99.68
1o04_A	500	Aldehyde dehydrogenase, mitochondrial precursor; A	99.67
3k2w_A	497	Betaine-aldehyde dehydrogenase; structural genomic	99.67
1wnd_A	495	Putative betaine aldehyde dehydrogenase; NADH, flu	99.67
1a4s_A	503	ALDH, betaine aldehyde dehydrogenase; oxidoreducta	99.67
3iwj_A	503	Putative aminoaldehyde dehydrogenase; rossmann fol	99.67
3ros_A	484	NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-	99.67
2j6l_A	500	Aldehyde dehydrogenase family 7 member A1; NAD, re	99.66
3jz4_A	481	Succinate-semialdehyde dehydrogenase [NADP+]; tetr	99.66
3pqa_A	486	Lactaldehyde dehydrogenase; structural genomics, p	99.66
3prl_A	505	NADP-dependent glyceraldehyde-3-phosphate dehydro;	99.66
4e4g_A	521	Methylmalonate-semialdehyde dehydrogenase; structu	99.66
3rh9_A	506	Succinate-semialdehyde dehydrogenase (NAD(P)(+));	99.66
3qan_A	538	1-pyrroline-5-carboxylate dehydrogenase 1; proline	99.66
2imp_A	479	Lactaldehyde dehydrogenase; protein-lactate-NADH t	99.66
1euh_A	475	NADP dependent non phosphorylating glyceraldehyde-	99.65
3b4w_A	495	Aldehyde dehydrogenase; RV0223C-NAD complex, struc	99.65
3r31_A	517	BADH, betaine aldehyde dehydrogenase; structural g	99.65
3etf_A	462	Putative succinate-semialdehyde dehydrogenase; cen	99.64
1uxt_A	501	Glyceraldehyde-3-phosphate dehydrogenase (NADP+);	99.64
2ve5_A	490	BADH, betaine aldehyde dehydrogenase; aldehyde oxi	99.64
4dng_A	485	Uncharacterized aldehyde dehydrogenase ALDY; struc	99.63
1t90_A	486	MMSDH, probable methylmalonate-semialdehyde dehydr	99.63
3lns_A	457	Benzaldehyde dehydrogenase; oxidoreductase, NADP+,	99.63
4h7n_A	474	Aldehyde dehydrogenase; structural genomics, PSI-b	99.62
3ju8_A	490	Succinylglutamic semialdehyde dehydrogenase; alpha	99.6
4f9i_A	1026	Proline dehydrogenase/delta-1-pyrroline-5-carboxy	99.6
3r64_A	508	NAD dependent benzaldehyde dehydrogenase; structur	99.59
3sza_A	469	Aldehyde dehydrogenase, dimeric NADP-preferring; A	99.58
3i44_A	497	Aldehyde dehydrogenase; oxidoreductase, structural	99.57
3haz_A	1001	Proline dehydrogenase; proline utilization A, PUTA	99.57
2y53_A	534	Aldehyde dehydrogenase (BOX pathway); oxidoreducta	99.56
3ty7_A	478	Putative aldehyde dehydrogenase SAV2122; structura	99.54
1ez0_A	510	ALDH, aldehyde dehydrogenase; nucleotide binding d	99.54
3v4c_A	528	Aldehyde dehydrogenase (NADP+); structural genomic	99.53
4e3x_A	563	Delta-1-pyrroline-5-carboxylate dehydrogenase, mit	99.51
1vlu_A	468	Gamma-glutamyl phosphate reductase; YOR323C, struc	99.46
3k9d_A	464	LMO1179 protein, aldehyde dehydrogenase; structura	99.45
2h5g_A	463	Delta 1-pyrroline-5-carboxylate synthetase; dehydr	99.44
4ghk_A	444	Gamma-glutamyl phosphate reductase; structural gen	99.39
3my7_A	452	Alcohol dehydrogenase/acetaldehyde dehydrogenase;	99.38
1o20_A	427	Gamma-glutamyl phosphate reductase; TM0293, struct	99.32

>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*

Probab=99.71  E-value=1.5e-17  Score=120.47  Aligned_cols=65  Identities=26%  Similarity=0.280  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|+++++++.++..+.. .+...+++|+|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       111 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~ALaaGNtVVl  175 (490)
T 2wme_A          111 DVLEYYAGLVPAIEGEQIPLR-ETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAPALAAGNAMIF  175 (490)
T ss_dssp             HHHHHHHHHGGGCCEEEEEEE-TTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHhccccccCcccccc-CCcceeEEecceeEEEEeccccCcchhhhhhHHHHHHcCCeEEE
Confidence            468899999999988876654 35678999999999999999999999999999999999999984

>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q

Probab=99.70  E-value=2e-17  Score=119.45  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+|||++|+|||||+.+..||+++||++||+||-
T Consensus       116 ~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  181 (484)
T 3ifg_A          116 SFIEWFAEEGKRVAGDTLPTPDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGPALAAGCPIVV  181 (484)
T ss_dssp             HHHHHHHHHHTTCCEEEECCSSTTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHhhcCccccccCCCceeEEEecCCcEEEEECCCcChHHHHHHHHHHHHHcCCEEEE
Confidence            568889999888877765543345678999999999999999999999999999999999999984

>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*

Probab=99.70  E-value=2.2e-17  Score=120.22  Aligned_cols=66  Identities=26%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+|||++|+|||||+.+..+|++|||++||+||-
T Consensus       138 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~apALaaGNtVVl  203 (520)
T 3ed6_A          138 NVFMYFAGLADKDGGEMIDSPIPDTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVM  203 (520)
T ss_dssp             HHHHHHHHHTTSCCEEEECCSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHhcCeecccCCCCCcccccccCccEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            468899999988877765543235678999999999999999999999999999999999999984

>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}

Probab=99.70  E-value=2.9e-17  Score=119.18  Aligned_cols=66  Identities=23%  Similarity=0.244  Sum_probs=57.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+...++...+++++|+|||++|+|||||+.+..||+++||++||+||-
T Consensus       136 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  201 (504)
T 3ek1_A          136 SFIEWFAEEAKRVYGDTIPAPQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAPALAAGCTMIV  201 (504)
T ss_dssp             HHHHHHHHHHTTCCEEEECCSSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHhcCcccccccccccceeeccCceEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            468899999888877765543345678999999999999999999999999999999999999984

>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*

Probab=99.69  E-value=4.1e-17  Score=118.72  Aligned_cols=66  Identities=21%  Similarity=0.348  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHhhhcccccCC---CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP---PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+..   ..+...+++++|+|||++|+|||||+.+..||+++||++||+||-
T Consensus       143 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGNtVVl  211 (517)
T 2o2p_A          143 QTFRYFAGWCDKIQGATIPINQARPNRNLTLTKKEPVGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVI  211 (517)
T ss_dssp             HHHHHHHHHGGGCCEEEECCCCCTTSCEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCccccccccCCCCceEEEEecCCccEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            468899999988877755432   223367899999999999999999999999999999999999984

>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}

Probab=99.69  E-value=5.2e-17  Score=118.38  Aligned_cols=66  Identities=21%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       129 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  194 (528)
T 3u4j_A          129 DLWSYAAGQARALEGQTHNNIGDDRLGLVLREPVGVVGIITPWNFPFIIASERVPWAIGSGCTVVL  194 (528)
T ss_dssp             HHHHHHHHHHTTCCEEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCeeeccCCCCceeEEEeccceEEEEECCCccHHHHHHHHHHHHHHcCCeEEE
Confidence            468899999988887765543245678999999999999999999999999999999999999984

>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology; HET: MSE NAD; 2.01A {Sinorhizobium meliloti} PDB: 4dal_A*

Probab=99.68  E-value=2.7e-17  Score=119.14  Aligned_cols=66  Identities=21%  Similarity=0.350  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       129 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ALaaGNtVVl  194 (498)
T 4f3x_A          129 DCWRFFAGAVRNLHAPAAGEYLPGHTSMIRRDPIGIVGSIAPWNYPLMMMAWKLAPAIGGGNTVVF  194 (498)
T ss_dssp             HHHHHHHHHTTCCEEECBEEEETTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCccccCCcccccceEEEcCcceEEEECCCchHHHHHHHHHHHHHHcCCeEEE
Confidence            467888998888777655432235678999999999999999999999999999999999999984

>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*

Probab=99.68  E-value=1e-16  Score=116.39  Aligned_cols=66  Identities=18%  Similarity=0.127  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHhhhccccc-CCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITL-DPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~-~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+ ...++...+++++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  206 (516)
T 1uzb_A          140 DFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIA  206 (516)
T ss_dssp             HHHHHHHHHHGGGCSSCCCCCCCTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCcccccCCCCceEEEEEeccceEEEECCCccHHHHHHHHHHHHHHcCCeEEE
Confidence            4688899988888776532 22234567899999999999999999999999999999999999984

>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*

Probab=99.68  E-value=7.9e-17  Score=116.28  Aligned_cols=66  Identities=21%  Similarity=0.264  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       114 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  179 (487)
T 2w8n_A          114 FFLEWFSEEARRVYGDIIHTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVV  179 (487)
T ss_dssp             HHHHHHHHHGGGCCCEEECCSCTTCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            467889988888777654432234567899999999999999999999999999999999999984

>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}

Probab=99.68  E-value=5.9e-17  Score=117.65  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+....+...+++++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       130 ~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  195 (515)
T 2d4e_A          130 ENFAFYAEYAEHAMEDRTFPVDRDWLYYTVRVPAGPVGIITPWNAPLMLSTWRIAPALAFGNTVVL  195 (515)
T ss_dssp             HHHHHHHTTGGGTTCEEECCBTTTEEEEEEEEECCCEEEECCSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceeEEEEecCCceEEECCCCchhhhhhhhhhHHHHcCCeeee
Confidence            467888888888877655432235567899999999999999999999999999999999999984

>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*

Probab=99.68  E-value=8.6e-17  Score=116.56  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=56.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.++..+.. .+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       128 ~~~~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  192 (501)
T 1bxs_A          128 KTLRYCAGWADKIQGRTIPMD-GNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVV  192 (501)
T ss_dssp             HHHHHHHHHGGGCCEEEECCS-SSEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhhCCeeecc-CCcceeEEecCCceEEEECCCcchHHHHHHHHHHHHHcCCeeec
Confidence            468899999988887755432 35567899999999999999999999999999999999999984

>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...

Probab=99.67  E-value=7.7e-17  Score=116.80  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...+++++|+|||++|+|||||+.+..||+++||++||+||-
T Consensus       127 ~~~~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  191 (500)
T 1o04_A          127 KCLRYYAGWADKYHGKTIPID-GDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVM  191 (500)
T ss_dssp             HHHHHHHHHTTTCCEEEECCS-SSEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhhCcceecC-CCceEEEEEecCCcEEEECCCCchHHHHHHHHHHHHHcCCEEEE
Confidence            468889998888877654432 34567899999999999999999999999999999999999984

>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}

Probab=99.67  E-value=7e-17  Score=116.78  Aligned_cols=66  Identities=21%  Similarity=0.172  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+....+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  181 (497)
T 3k2w_A          116 TFIDYGCDNALTIEGDILPSDNQDEKIYIHKVPRGVVVGITAWNFPLALAGRKIGPALITGNTMVL  181 (497)
T ss_dssp             HHHHHHHHTTTTCCEEEEECSSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCcceeEEEcCCceEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            467888888888877765543345678999999999999999999999999999999999999984

>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A

Probab=99.67  E-value=4.4e-17  Score=117.95  Aligned_cols=66  Identities=20%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+...++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       127 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  192 (495)
T 1wnd_A          127 DVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVL  192 (495)
T ss_dssp             HHHHHHHHHTTCCEEECBEEEETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCccccCCCCCceeEEeeecCCeEEEECCCcchHHHHHHHHHHHHHcCCeeEe
Confidence            468888888888777654432124467899999999999999999999999999999999999984

>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*

Probab=99.67  E-value=5.7e-17  Score=117.49  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++..++..+.. .+...+++++|+|||++|+|||||+.+..||+++||++||+||-
T Consensus       124 ~~~~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  188 (503)
T 1a4s_A          124 QCIEYYAGLAPTLSGQHIQLP-GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPALACGNAVVF  188 (503)
T ss_dssp             HHHHHHHHHGGGCCEEEEECG-GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCcccCC-CCceeEEEEecCceEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            468899999888877654433 24467899999999999999999999999999999999999984

>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*

Probab=99.67  E-value=1.4e-16  Score=115.29  Aligned_cols=66  Identities=24%  Similarity=0.288  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHhhhcccc-cC--CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEIT-LD--PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~-~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|+++++++.++.. +.  ...+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  184 (503)
T 3iwj_A          116 GCFEYYADLAEKLDARQKAPVSLPMDTFKSHVLREPIGVVGLITPWNYPMLMATWKVAPALAAGCAAIL  184 (503)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEECCSCTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCccccccccCCCccceEEEcCCceEEEECCCchHHHHHHHHHHHHHhcCCeEEE
Confidence            468899999988876542 11  1134578999999999999999999999999999999999999984

>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}

Probab=99.67  E-value=1.5e-16  Score=114.91  Aligned_cols=65  Identities=14%  Similarity=-0.072  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus        92 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  156 (484)
T 3ros_A           92 SICNYYADHGPEMLKPTKLNS-DLGNAYYLKQSTGVIMACEPWNFPLYQVIRVFAPNFIVGNPILL  156 (484)
T ss_dssp             HHHHHHHHHHHHHTSCEEECC-TTSEEEEEEECCCEEEEECCSSSTTHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHhcCCeeccC-CCceeEEEecCCceEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            468899999998887765543 35678999999999999999999999999999999999999984

>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*

Probab=99.66  E-value=1.3e-16  Score=115.38  Aligned_cols=66  Identities=41%  Similarity=0.597  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.++..+...++...+++++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       125 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  190 (500)
T 2j6l_A          125 DICDYAVGLSRMIGGPILPSERSGHALIEQWNPVGLVGIITAFNFPVAVYGWNNAIAMICGNVCLW  190 (500)
T ss_dssp             HHHHHHHHHTTTCCCBEECCSSTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCccccccCCCceeEEEEecccEEEEECCCcchhhHHHHHHHHHHHhCCEEEE
Confidence            356778887777766654433234456788999999999999999999999999999999999984

>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}

Probab=99.66  E-value=1.3e-16  Score=114.76  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..++..+....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  178 (481)
T 3jz4_A          113 SFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVL  178 (481)
T ss_dssp             HHHHHHHHHGGGCCEEEECCSSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHhcCccccccCCCceEEEEEcCccEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            457888888888777665543345678899999999999999999999999999999999999984

>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein structure initiative, nysgrc, P biology, oxidoreductase; 1.50A {Methanocaldococcus jannaschii} PDB: 3rhd_A*

Probab=99.66  E-value=1.8e-16  Score=114.50  Aligned_cols=64  Identities=22%  Similarity=0.408  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.++..+..  +...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       100 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  163 (486)
T 3pqa_A          100 GTFKLAAFYVKEHRDEVIPSD--DRLIFTRREPVGIVGAITPFNFPLNLSAHKIAPAIATGNVIVH  163 (486)
T ss_dssp             HHHHHHHHHHHHCCEEEECCT--TEEEEEEEEECSEEEEEECSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCceecCC--CceeEEEEccccEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            468899999988877765542  5678999999999999999999999999999999999999984

>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*

Probab=99.66  E-value=1.4e-16  Score=115.50  Aligned_cols=66  Identities=26%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHhhhcccccCCC-C----CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPP-P----NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~-~----~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+... +    +...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       115 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  185 (505)
T 3prl_A          115 DIIRHTADEALRLNGETLKGDQFKGGSSKKIALVEREPLGVVLAISPFNYPVNLAAAKIAPALVTGNTVVF  185 (505)
T ss_dssp             HHHHHHHHHHHTCCEEEEEGGGSTTTCSSEEEEEEEEECSEEEEEECSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCccccccccccccCCceeEEEEcCCcEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            4688899998888776544321 1    4567899999999999999999999999999999999999984

>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}

Probab=99.66  E-value=9.8e-17  Score=116.79  Aligned_cols=66  Identities=20%  Similarity=0.192  Sum_probs=54.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++...++..+....+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       130 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  195 (521)
T 4e4g_A          130 EVCEFVIGIPHLQKSEFTEGAGPGIDMYSIRQPVGIGAGITPFNFPGMIPMWMFAPAIACGNAFIL  195 (521)
T ss_dssp             HHHHHHHTHHHHTCEEEEEEEETTEEEEEEEEECCEEEEECCSSCTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCcceeEEEcCCcEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            467888887777776644332235568899999999999999999999999999999999999984

>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}

Probab=99.66  E-value=1.3e-16  Score=115.74  Aligned_cols=65  Identities=22%  Similarity=0.251  Sum_probs=56.5

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEee-ecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENW-NPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~-~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+.. .+...++++ +|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       115 ~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  180 (506)
T 3rh9_A          115 GFFDYCAKHISALDSHTIPEK-PKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLSAALAAGCPSVI  180 (506)
T ss_dssp             HHHHHHHHHGGGGCCEECSCC-GGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHhcCcccccC-CCceeeEeecccceEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            468899999999887765543 355678889 99999999999999999999999999999999984

>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A

Probab=99.66  E-value=2.8e-16  Score=114.73  Aligned_cols=65  Identities=22%  Similarity=0.209  Sum_probs=55.4

Q ss_pred             hHHHHHHHH-HHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKR-IQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~-a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++. .+...++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       140 ~~l~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  205 (538)
T 3qan_A          140 DFLEYYARQMIELNRGKEILSR-PGEQNRYFYTPMGVTVTISPWNFALAIMVGTAVAPIVTGNTVVL  205 (538)
T ss_dssp             HHHHHHHHHHHHHHTCBCCCCC-TTEEEEEEEEECCEEEEECCSTTTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCeeeccc-CCcceeeecCCCcEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            468889888 666677665543 35678999999999999999999999999999999999999984

>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*

Probab=99.66  E-value=1.3e-16  Score=114.76  Aligned_cols=66  Identities=23%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+...++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       110 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  175 (479)
T 2imp_A          110 DYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIARKMAPALLTGNTIVI  175 (479)
T ss_dssp             HHHHHHHTTTTTCCCEEECCSSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhhCCccccCCCCceeEEEEeccceEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            467888888777777654433234567899999999999999999999999999999999999984

>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase; 1.82A {Streptococcus mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A* 2qe0_A* 2esd_A* 1qi1_A*

Probab=99.65  E-value=1.6e-16  Score=114.26  Aligned_cols=66  Identities=24%  Similarity=0.272  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCC----cee-EEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPN----YVL-LENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~----~~~-~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+...++    ... +++++|+|||++|+|||||+.+..|++++||++||+||-
T Consensus       106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVl  176 (475)
T 1euh_A          106 EIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAF  176 (475)
T ss_dssp             HHHHHHHHHHTTCCEEEEEGGGTCGGGTTEEEEEEEEECSEEEEECCTTSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCcccCCCCCccccceeeEEEEeccceEEEECCCCchHHHHHHHHHHHHHcCCEEEE
Confidence            467888888888777654432123    356 899999999999999999999999999999999999984

>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}

Probab=99.65  E-value=1.3e-16  Score=115.47  Aligned_cols=65  Identities=25%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.++..+.. .+...+++++|+|||++|+|||||+.+..||+++||++||+||-
T Consensus       115 ~~~~~~a~~~~~~~g~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  179 (495)
T 3b4w_A          115 GAMNYFAGAADKVTWTETRTG-SYGQSIVSREPVGVVGAIVAWNVPLFLAVNKIAPALLAGCTIVL  179 (495)
T ss_dssp             HHHHHHHTCGGGSCSEEEEEE-TTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCcccCC-CCceEEEEEccCceEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            467888888888877654432 24467899999999999999999999999999999999999984

>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}

Probab=99.65  E-value=2.8e-16  Score=114.28  Aligned_cols=64  Identities=20%  Similarity=0.143  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHh----hhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQK----ELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~----~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++++    ..++..+.. .+. .+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       116 ~~~~~~a~~~~~~~~~~~g~~~~~~-~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  183 (517)
T 3r31_A          116 SGADAFEFFGGIAPSALNGDYIPLG-GDF-AYTKRVPLGVCVGIGAWNYPQQIACWKAAPALVAGNAMVF  183 (517)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCEEECS-SSE-EEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhhhccccccCcccccC-CCc-ceEEEcCccEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            468899998888    667665542 345 8999999999999999999999999999999999999984

>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A

Probab=99.64  E-value=4.4e-16  Score=111.43  Aligned_cols=65  Identities=20%  Similarity=0.063  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++. +....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus        95 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~Vvl  159 (462)
T 3etf_A           95 ALCDWYAEHGPAMLNPE-PTLVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPILLAGNSYLL  159 (462)
T ss_dssp             HHHHHHHHHHHHHTSCE-ECSSGGGCEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHhHHHhcCCc-ccCCCCceeEEEeecCcEEEEECCCchHHHHHHHHHHHHHhcCCEEEE
Confidence            46788888888887765 322235578899999999999999999999999999999999999984

>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH, glucose 1-phosphate, glycolysis, regulation, catatysis, oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A* 1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*

Probab=99.64  E-value=2e-16  Score=114.62  Aligned_cols=66  Identities=18%  Similarity=0.117  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHhhhcccccCC--CC--CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP--PP--NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~--~~--~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+..  ..  +...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       121 ~~l~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  190 (501)
T 1uxt_A          121 DRLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKITYSFIYGNAVVV  190 (501)
T ss_dssp             HHHHTGGGGGGGTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCTTSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCccccccccCCCcCceEEEEEeeccEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            456777877777766654432  22  3367899999999999999999999999999999999999984

>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics, protein structure initiative, nysgrc, P biology; 2.50A {Bacillus subtilis}

Probab=99.63  E-value=5e-16  Score=111.79  Aligned_cols=66  Identities=20%  Similarity=0.110  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHhhhcccccCC-CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP-PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..++..+.. .++...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       110 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  176 (485)
T 4dng_A          110 AILDEAMTYTGELGGVKEVPSDIEGKTNKIYRLPLGVISSISPFNFPMNLSMRSIAPAIALGNSVVH  176 (485)
T ss_dssp             HHHHHHHHHGGGCSCEECCCCSSTTEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhCCeeccccCCCCceEEEEEecceEEEEECCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            457888888887777654432 234678999999999999999999999999999999999999984

>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}

Probab=99.63  E-value=2.8e-16  Score=113.30  Aligned_cols=66  Identities=21%  Similarity=0.261  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++..+...++..+....+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       109 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  174 (486)
T 1t90_A          109 ENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFIL  174 (486)
T ss_dssp             HHHHHHTTHHHHHCEEEEEEEETTEEEEEEEEECSEEEEECCSSCTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCcccccCCCCceeEEEecccCEEEEECCCchhHHHHHHHHHHHHHcCCEEEE
Confidence            356777777766666644321224567899999999999999999999999999999999999984

>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde dehyd adduct, covalent catalysis, mandelate racemase pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB: 3lv1_A*

Probab=99.63  E-value=1.2e-15  Score=109.32  Aligned_cols=66  Identities=20%  Similarity=0.164  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHhhhccc-ccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEI-TLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~-~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..+.. ....  ..+...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus        95 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  163 (457)
T 3lns_A           95 HEIDFALAHLDEWVAPVSVPSPDIIAPSECYVVQEPYGVTYIIGPFNYPVNLTLTPLIGAIIGGNTCII  163 (457)
T ss_dssp             HHHHHHHHHHHHHTSCEEECCCGGGCSCEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhhccccccccccCCCcceEEEeecceEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            46788888887765432 2111  124567899999999999999999999999999999999999984

>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}

Probab=99.62  E-value=9.4e-16  Score=110.19  Aligned_cols=66  Identities=20%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHHhhhccc-ccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEI-TLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~-~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..... .....+......+++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~~~ALaaGN~VVl  159 (474)
T 4h7n_A           93 ASIDRWCGLAPELLQTSAKNTSIPFIALQQSLVPYPLVGVISPWNFPLTLSMIDTIPALLAGCAVVV  159 (474)
T ss_dssp             HHHHHHHHHHHHHHCCEEEECSSTTEEEEEEEEECSEEEEEECSSSHHHHHHTTHHHHHHHTCEEEE
T ss_pred             HHHHHHHhhhhhcccccccCCCCCCccceEEEEeccEEEEECCCCcHHHHHhcccCcchhcCCceee
Confidence            35677777777765433 2222335566788999999999999999999999999999999999984

>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}

Probab=99.60  E-value=1.4e-15  Score=109.77  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++..++..++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  172 (490)
T 3ju8_A          108 NKVAISVQAFRERTGEKSGPL-ADATAVLRHKPHGVVAVFGPYNFPGHLPNGHIVPALLAGNCVVF  172 (490)
T ss_dssp             HHHHHHHHHHHHHSCCEEEEE-TTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCccccC-CCCeeeEEECCCCEEEEECCCcchHHHHHHHHHHHHHcCCeEEE
Confidence            467888888887777654322 23456778999999999999999999999999999999999984

>4f9i_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase; proline utilization A, PUTA, flavoenzyme, structural genomic biology; HET: FAD MES; 2.20A {Geobacter sulfurreducens}

Probab=99.60  E-value=2.4e-15  Score=116.52  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.+...+...++...++.++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       634 d~lr~~a~~~~~~~~~~~~~~~~g~~~~~~~~PlGVV~~I~PwNfPl~i~~~~~a~ALaaGNtVVl  699 (1026)
T 4f9i_A          634 DFLEYYAREMIRLGQPQRVGHAPGELNHYFYEPKGVAAVIAPWNFPLAISMGMASAAIVTGNCVVF  699 (1026)
T ss_dssp             HHHHHHHHHHHHHTSCEEECCCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCccccCCCCccceeEeecCceEEEeCCCccHHHHHHHHHHHHHHcCCEEEE
Confidence            468899999988876654432345678899999999999999999999999999999999999984

>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}

Probab=99.59  E-value=1.2e-15  Score=110.57  Aligned_cols=65  Identities=23%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHhhhcccccCC-CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP-PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~-~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..+ ..+.. .++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       116 ~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  181 (508)
T 3r64_A          116 NITKESASFPGRVHG-RISPSNTPGKENRVYRVAKGVVGVISPWNFPLNLSIRSVAPALAVGNAVVI  181 (508)
T ss_dssp             HHHHHHTTSTTTCCE-EEECCSSTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhhhhcC-cccccCCCCceeEEEEecceEEEEECCCcchHHHHHHHHHHHHhcCCEEEE
Confidence            356777777766655 44432 234678999999999999999999999999999999999999984

>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*

Probab=99.58  E-value=5e-15  Score=106.56  Aligned_cols=42  Identities=24%  Similarity=0.243  Sum_probs=39.7

Q ss_pred             ceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          27 YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        27 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus       112 ~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~vVl  153 (469)
T 3sza_A          112 DELYIHSEPLGVVLVIGTWNYPFNLTIQPMVGAIAAGNAVVL  153 (469)
T ss_dssp             SEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             ccceeeccCCCEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            467899999999999999999999999999999999999984

>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Bartonella henselae}

Probab=99.57  E-value=3.5e-15  Score=108.09  Aligned_cols=63  Identities=17%  Similarity=0.161  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhhcccccCCCCCceeEEe-eecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDPPPNYVLLEN-WNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~~~~~~~~~~-~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++...+........  .+...+++ ++|+|||++|+|||||+.+..||+++||++||+||-
T Consensus       131 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  194 (497)
T 3i44_A          131 HIRNFIKAYKEFSFQEALI--EGNEQAILHYDAIGVVGLITPWNWPMNQVTLKVIPALLAGCTMVL  194 (497)
T ss_dssp             HHHHHHHHHHHCCSEEESS--TTCSSCEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHhhccccccccc--CCceeEEEeecCceEEEEECCCcchHHHHHHHHHHHHHcCCEEEE
Confidence            4555565554443322111  13346777 999999999999999999999999999999999984

>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme, 1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase; HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}

Probab=99.57  E-value=6.7e-15  Score=113.81  Aligned_cols=66  Identities=21%  Similarity=0.110  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHhhhcccccC-CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLD-PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++.... ...+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       616 ~~lr~~a~~a~~~~g~~~~~~~~~g~~~~~~~~P~GVV~~I~PwNfPl~i~~~~va~ALAAGNtVVl  682 (1001)
T 3haz_A          616 DFCRYYAAQGRKLFGSETAMPGPTGESNALTMRGRGVFVAISPWNFPLAIFLGQVTAALMAGNSVVA  682 (1001)
T ss_dssp             HHHHHHHHHHHHHHSSCEECCCCTTEEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhhcCccccccCCCCCceEEEEeCCcEEEEEcCCCChHHHHHHHHHHHHHcCCEEEE
Confidence            46889999998887654222 1235678899999999999999999999999999999999999984

>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP, nucleotide-binding; HET: NAP; 1.40A {Burkholderia xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*

Probab=99.56  E-value=7.5e-15  Score=106.86  Aligned_cols=66  Identities=26%  Similarity=0.048  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHhhhc-------ccccCCCCC-ceeEEeeecC-ceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELA-------EITLDPPPN-YVLLENWNPL-GVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~-------~~~~~~~~~-~~~~~~~~P~-GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.+       +..+...++ ...++.++|+ |||++|+|||||+.+..+|+++||++||+||-
T Consensus       110 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~P~~GVv~~I~PwN~P~~~~~~~~a~ALaaGN~VVl  184 (534)
T 2y53_A          110 FTLSYYAKLGASLGEVHALRDGSAESLSKDRSFSAQHVLSPTRGVALFINAFNFPSWGLWEKAAPALLSGVPVIV  184 (534)
T ss_dssp             HHHHHHHHHHHTTCSCSEEEEEEEEECSTTSSEEEEEEEEECSSCEEEECCTTCTTHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHhccccccccCCccccCCCCCcccceEEEecCCCEEEEECCCchHHHHHHHHHHHHHHcCCEEEE
Confidence            457888888877643       222221112 2457889997 99999999999999999999999999999984

>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.40A {Staphylococcus aureus}

Probab=99.54  E-value=6.4e-15  Score=105.88  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..     ....+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       112 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~ALaaGN~VVl  172 (478)
T 3ty7_A          112 NHFVAARDALDNYEFEER-----RGDDLVVKEAIGVSGLITPWNFPTNQTSLKLAAAFAAGSPVVL  172 (478)
T ss_dssp             HHHHHHHHHHHHCCSEEE-----ETTEEEEEEECCCEEEECCSSSTTHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHHhhcccC-----CccceEEecCceEEEEECCCcchHHHHHHHHHHHHHcCCeEEE
Confidence            457788888777665431     1246889999999999999999999999999999999999984

>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+, oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP: c.82.1.1 PDB: 1eyy_A*

Probab=99.54  E-value=9.1e-15  Score=105.93  Aligned_cols=66  Identities=24%  Similarity=0.174  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHh--hhcccccC----CCC-C-ceeEEeeecCceEEEEecCCccHHhH--HHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQK--ELAEITLD----PPP-N-YVLLENWNPLGVVGIISAFNFPVAVY--GWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~--~~~~~~~~----~~~-~-~~~~~~~~P~GVv~~I~PwN~P~~~~--~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++  ..++.+..    ..+ + ...+++++|+|||++|+|||||+.+.  .||+++||++||+||-
T Consensus        96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~~~ALaaGN~VVl  171 (510)
T 1ez0_A           96 NQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIV  171 (510)
T ss_dssp             HHHHHHHHHHHHTGGGCEEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSCTTTTSTTSHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHhCccccccccccccccCCCCCCCceEEEecCcEEEEECCccchhhhhhhHHHHHHHHHcCCEEEE
Confidence            467888888876  44433211    101 1 13578999999999999999999984  4999999999999984

>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology, nysgrc, NEW YORK structura genomics research consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}

Probab=99.53  E-value=1.1e-14  Score=105.79  Aligned_cols=66  Identities=26%  Similarity=0.232  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHhh--hccccc----CC--CCCceeEEeeecCceEEEEecCCccHHhHH--HHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKE--LAEITL----DP--PPNYVLLENWNPLGVVGIISAFNFPVAVYG--WNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~--~~~~~~----~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~--~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++.  .++...    ..  ..+...+++++|+|||++|+|||||+.+..  +|+++||++||+||-
T Consensus       129 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~~~a~ALaaGN~VVl  204 (528)
T 3v4c_A          129 GQLRLFADHIEKGDYLDRRVDAAMPERQPAPRQEIRLVQRPVGPVAVFGASNFPLAFSTAGGDTAAALAAGCPVVV  204 (528)
T ss_dssp             HHHHHHHHHHHHCGGGCCEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSSTTTTSTTSHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHhhccccccccccccccccCCCCCcceeEeeCCcEEEEECCCcchHHHhhhhhhhHHHHhcCCEEEE
Confidence            4678888888773  333221    10  112346889999999999999999999854  999999999999984

>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino acid metabolism, proline inhibition, oxidoreductase; HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A* 3v9j_A* 3v9g_A 3v9h_A 3v9i_A

Probab=99.51  E-value=3.1e-14  Score=104.65  Aligned_cols=65  Identities=25%  Similarity=0.110  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.++++.++.......+...+++++|+|||++|+|||||+.+..++++||| +||+||-
T Consensus       168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~p~GVV~~I~PwNfP~~~~~~~~apAL-aGNtVVl  232 (563)
T 4e3x_A          168 DFFRFNAKFAVELEGEQPISVPPSTNHTVYRGLEGFVAAISPFNFTAIGGNLAGAPAL-MGNVVLW  232 (563)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCTTEEEEEECCBCSSEEEEECCSSCHHHHHHHHHHHHH-TTCCEEE
T ss_pred             HHHHHHHHHHHHhhCCCccCCCCCcceEEEecCceEEEEECCchHHHHHHHHHHHHhh-cCCEEEE
Confidence            4678899999888775433222234456778889999999999999999999999999 5999984

>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1

Probab=99.46  E-value=1.2e-13  Score=99.38  Aligned_cols=64  Identities=14%  Similarity=0.160  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHhhh------cccccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKEL------AEITLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~------~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..++++++.+++..      ++..+..  ..+...+++++|+|||++|+||| | .+..+|+++||++||+||-
T Consensus        86 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwN-P-~~~~~~~~~ALaaGN~VVl  157 (468)
T 1vlu_A           86 DKFEVMLQGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESR-P-EVIANITALSIKSGNAAIL  157 (468)
T ss_dssp             THHHHHHHHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSC-T-HHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHhhcCCCCCeecccccCCCCceeEEEecCcceEEEEeccC-h-HHHHHHHHHHHHcCCEEEE
Confidence            46788888888776      4432211  11345689999999999999999 9 9999999999999999984

>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}

Probab=99.45  E-value=1e-13  Score=99.42  Aligned_cols=43  Identities=19%  Similarity=0.172  Sum_probs=40.0

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+++++|+|||++|+|||||+.+..+|+++||++||+||-
T Consensus        99 ~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVl  141 (464)
T 3k9d_A           99 EKKVMEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVF  141 (464)
T ss_dssp             TTTEEEEEEECCEEEEEECSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CceeEEEEecceEEEEECCCcChHHHHHHHHHHHHHhCCeEEE
Confidence            4467889999999999999999999999999999999999984

>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}

Probab=99.44  E-value=6.8e-14  Score=100.59  Aligned_cols=64  Identities=22%  Similarity=0.137  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHHhhhcccccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+++..++..+..  ..+...+++++|+|||++|+||| |+..+ +++++||++||+||-
T Consensus       106 ~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVv~~I~p~n-P~n~p-~~~a~ALaaGN~VVl  171 (463)
T 2h5g_A          106 IGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESR-PDCLP-QVAALAIASGNGLLL  171 (463)
T ss_dssp             HHHHHHHHHCTTSTTCEEEEEEEETTEEEEEEEEECCEEEEEESSC-TTHHH-HHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHhhHhhcCcccccccCCCCceeEEEEEcCceEEEEecCC-cHHHH-HHHHHHHHcCCEEEE
Confidence            357788877777776653321  12445689999999999999888 88877 899999999999984

>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}

Probab=99.39  E-value=3.7e-13  Score=96.17  Aligned_cols=41  Identities=29%  Similarity=0.216  Sum_probs=37.4

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+++++|+|||++|+||| | .+..+++++||++||+||-
T Consensus       128 ~~~~~~~~~P~GVV~~I~p~n-P-~~~~~~~~~ALaaGN~VVl  168 (444)
T 4ghk_A          128 GIQVGQMRVPLGVIGIIYESR-P-NVTIDAAALCLKSGNATIL  168 (444)
T ss_dssp             SCEEEEEEEECSEEEEECCSC-H-HHHHHHHHHHHHTTCEEEE
T ss_pred             CccceEEEeccEEEEEEeCCC-c-HHHHHHHHHHHHcCCEEEE
Confidence            456789999999999999999 9 5899999999999999984

>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}

Probab=99.38  E-value=4.3e-13  Score=95.92  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...++.++|+||+++|+|||||+.+..+|+++||++||+||-
T Consensus        94 ~~~~~~~~~P~GVv~~I~P~N~P~~~~~~k~~~ALaaGN~VVl  136 (452)
T 3my7_A           94 NLGTMTIAEPVGIICGIVPTTNPTSTAIFKSLISLKTRNGIIF  136 (452)
T ss_dssp             ---CEEEEEECCEEEEEECTTSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             CCceEEEecCceEEEEEcCCCChHHHHHHHHHHHHhcCCeEEE
Confidence            3456889999999999999999999999999999999999984

>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1

Probab=99.32  E-value=1.3e-12  Score=92.88  Aligned_cols=63  Identities=21%  Similarity=0.137  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHhhhcccccCC--CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDP--PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~--~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +.+++|++++++ .++..+..  ..+...+++++|+|||++|+||| | .+..+++++||++||+||-
T Consensus        92 ~~l~~~a~~~~~-~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p-~-~~~~~~~~~ALaaGNtVVl  156 (427)
T 1o20_A           92 KACETVIGLKDP-VGEVIDSWVREDGLRIARVRVPIGPIGIIYESR-P-NVTVETTILALKSGNTILL  156 (427)
T ss_dssp             HHHHHHHHSCCC-TTCEEEEEECTTSCEEEEEEEECCCEEEECCSC-T-HHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHhcccc-cCccccccccCCCceeEEEeecceeEEEEecCC-h-HHHHHHHHHHHHcCCEEEE
Confidence            345666665544 34433211  12345688999999999999987 3 6899999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	74
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-07
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	3e-06
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-05
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-05
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	8e-05
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	9e-05
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	1e-04
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-04
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-04
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-04
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	2e-04
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	4e-04
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-04
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	6e-04
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	8e-04
d1bxsa_	494	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	8e-04
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-04
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	0.001
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	0.002
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	0.002
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	0.002
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	0.003
d1o04a_	494	c.82.1.1 (A:) Aldehyde reductase (dehydrogenase),	0.003
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	0.003

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 2e-07
 Identities = 21/22 (95%), Positives = 21/22 (95%)

Query: 6  STSAKRIQKELAEITLDPPPNY 27
          STSAKRIQKELAEITLDPPPN 
Sbjct: 1  STSAKRIQKELAEITLDPPPNC 22

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 39.7 bits (92), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 15/64 (23%)

Query: 2  SKALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
          SK   + +KR+Q+EL  + +   P                I+AF     ++ W A +  P
Sbjct: 4  SKERHSVSKRLQQELRTLLMSGDPG---------------ITAFPDGDNLFKWVATLDGP 48

Query: 62 GWQV 65
             V
Sbjct: 49 KDTV 52

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-05
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 8  SAKRIQKELAEITLDPPPNYVLL--ENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
           A R+++EL  +  +PPP       ++        I+   N P     +   + +P
Sbjct: 3  RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIP 58

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 4e-05
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 8  SAKRIQKELAEITLDPPPN--YVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
          ++ R+ KEL ++   PPP    +  ++ N L    ++     P  +  +N  I+ P
Sbjct: 1  ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFP 56

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 8e-05
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 7  TSAKRIQKELAEITLDPPPNY 27
          T+ +R++++   I  DP P  
Sbjct: 1  TATQRLKQDYLRIKKDPVPYI 21

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 35.9 bits (82), Expect = 9e-05
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 6  STSAKRIQKELAEITLDPPPNYVL 29
           T+ KR+ KEL ++  D PP  V 
Sbjct: 2  KTAQKRLLKELQQLIKDSPPGIVA 25

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 35.5 bits (81), Expect = 1e-04
 Identities = 5/22 (22%), Positives = 12/22 (54%)

Query: 6  STSAKRIQKELAEITLDPPPNY 27
          + S +R+ ++  ++  DPP   
Sbjct: 2  TPSRRRLMRDFKKLQEDPPAGV 23

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 35.5 bits (81), Expect = 1e-04
 Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 6  STSA-KRIQKELAEITLDPPPNY 27
          ST A +R+ ++   +  D PP  
Sbjct: 1  STPARRRLMRDFKRMKEDAPPGV 23

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 5  LSTSAKRIQKELAEITLDPPPNYVL 29
          +++  KR+QKEL  +  DPPP   L
Sbjct: 1  MASMQKRLQKELLALQNDPPPGMTL 25

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 6  STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGII 42
          S +  RIQK++ E+ L    +    +  + L    +I
Sbjct: 2  SAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI 38

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 2e-04
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 9  AKRIQKELAEITLDPPPNY--VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALP 61
          ++R+ KEL EI      N+  + ++  N L   G+I   N P     +   I  P
Sbjct: 1  SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFP 55

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 34.0 bits (77), Expect = 4e-04
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 8  SAKRIQKELAEITLDPPPNY 27
          + KRIQKEL ++  DPP   
Sbjct: 2  ALKRIQKELQDLGRDPPAQC 21

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 34.0 bits (77), Expect = 5e-04
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 7  TSAKRIQKELAEITLDPPPNYVL 29
          + AKRI KE+  +  DP  +  L
Sbjct: 1  SRAKRIMKEIQAVKDDPAAHITL 23

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 6e-04
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 10 KRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYG 53
           R+ +E      D P  +V +   NP G + +    N+  A+ G
Sbjct: 5  SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNL---MNWECAIPG 45

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 8e-04
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 8  SAKRIQKELAEITLDPPPN 26
            KR+Q+EL  + +     
Sbjct: 2  VGKRLQQELMTLMMSGDKG 20

>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]} Length = 494

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 33.8 bits (77), Expect = 8e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 9   AKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
                 ++   T+    N+       P+GV G I  +NFP+ ++ W    AL
Sbjct: 126 CAGWADKIQGRTIPMDGNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPAL 177

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 33.2 bits (75), Expect = 8e-04
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 6  STSAKRIQKELAEITLDPPPNY 27
          ++  KRI KE  ++  DP P  
Sbjct: 2  ASLPKRIIKETEKLVSDPVPGI 23

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.001
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 10 KRIQKELAEITLDPPPNY 27
          +RI KE   +  +P P  
Sbjct: 5  RRIIKETQRLLAEPVPGI 22

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 32.4 bits (73), Expect = 0.002
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 10 KRIQKELAEITLDPPPN 26
          + + KE+  +T DPP  
Sbjct: 9  RLVYKEVTTLTADPPDG 25

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 32.4 bits (73), Expect = 0.002
 Identities = 5/60 (8%), Positives = 14/60 (23%), Gaps = 15/60 (25%)

Query: 6  STSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQV 65
            +   + ++  ++  +                   I+A      +  W   I      V
Sbjct: 3  GRAYLLLHRDFCDLKENNYKG---------------ITAKPVSEDMMEWEVEIEGLQNSV 47

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 32.5 bits (73), Expect = 0.002
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 7/40 (17%)

Query: 1  MSKALSTSAKRIQKELAEITLDPPPN----YVLLENWNPL 36
          M+   + + +RI++E  E+      +     V L + N  
Sbjct: 1  MA---NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFT 37

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (71), Expect = 0.003
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 6  STSAKRIQKELAEITLDPPPN----YVLLENWNPLGVVGIISAFNFPVAVYG 53
            ++ R+ KEL +I            V L N +       +   +    ++ 
Sbjct: 3  VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHS 54

>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 494

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.003
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 20  TLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIAL 60
           T+    ++       P+GV G I  +NFP+ +  W    AL
Sbjct: 137 TIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPAL 177

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 31.7 bits (71), Expect = 0.003
 Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 8  SAKRIQKELAEITLDPPPN-YVLLENWNPL 36
          S+  ++K+LA++   P       L + N +
Sbjct: 1  SSLLLKKQLADMRRVPVDGFSAGLVDDNDI 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	74
d1bxsa_	494	Aldehyde reductase (dehydrogenase), ALDH {Sheep (O	99.66
d1o04a_	494	Aldehyde reductase (dehydrogenase), ALDH {Human (H	99.63
d1a4sa_	503	Aldehyde reductase (dehydrogenase), ALDH {Baltic c	99.56
d1wnda_	474	Putative betaine aldehyde dehydrogenase YdcW {Esch	99.56
d1uzba_	516	1-pyrroline-5-carboxylate dehydrogenase {Thermus t	99.53
d1ad3a_	446	Aldehyde reductase (dehydrogenase), ALDH {Rat (Rat	99.51
d1ky8a_	499	Non-phosphorylating glyceraldehyde-3-phosphate deh	99.48
d1ez0a_	504	Aldehyde reductase (dehydrogenase), ALDH {Vibrio h	99.42
d1euha_	474	Aldehyde reductase (dehydrogenase), ALDH {Streptoc	99.26
d1o20a_	414	Gamma-glutamyl phosphate reductase {Thermotoga mar	99.2
d1vlua_	436	Gamma-glutamyl phosphate reductase {Baker's yeast	98.06

>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Sheep (Ovis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=99.66  E-value=1e-16  Score=113.54  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++++++.+++.++..+.. .+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       121 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~i~~ALaaGN~VVl  185 (494)
T d1bxsa_         121 KTLRYCAGWADKIQGRTIPMD-GNFFTYTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVV  185 (494)
T ss_dssp             HHHHHHHHHGGGCCEEEECCS-SSEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHhhhhhhhcceeecCC-CCceeEEEEccEEEEEEEeCccchhHHHHHHHHHHHHcCCeEEE
Confidence            457888888888888776654 46688999999999999999999999999999999999999984

>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.63  E-value=2.2e-16  Score=111.94  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++++.++.++..+.. .+...+++|+|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       121 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~VVl  185 (494)
T d1o04a_         121 KCLRYYAGWADKYHGKTIPID-GDFFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVM  185 (494)
T ss_dssp             HHHHHHHHHTTTCCEEEECCS-SSEEEEEEEEECCEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCceeccC-CCceeEEEEecccEEEEECCcccHHHHHHHHHHHHHHcCCeEEE
Confidence            357788888888888776654 46678899999999999999999999999999999999999984

>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Baltic cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Baltic cod (Gadus callarias) [TaxId: 8053]

Probab=99.56  E-value=2.2e-15  Score=107.15  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHhhhcccccCCCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLDPPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|+++.++..+...... .+...+++++|+||+++|+|||||+.+..+++++||++||+||-
T Consensus       124 ~~l~~~a~~~~~~~~~~~~~~-~~~~~~~~~~P~GVv~~I~p~NfP~~~~~~~~~~ALaaGN~VV~  188 (503)
T d1a4sa_         124 QCIEYYAGLAPTLSGQHIQLP-GGAFAYTRREPLGVCAGILAWNYPFMIAAWKCAPALACGNAVVF  188 (503)
T ss_dssp             HHHHHHHHHGGGCCEEEEECG-GGCEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             hcccccccccccccccccccC-CCcccccccccceeeecccCCCChHHHHHHHHHHHHHcCCEEEE
Confidence            457888888888877665543 35678999999999999999999999999999999999999984

>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase YdcW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Putative betaine aldehyde dehydrogenase YdcW
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=1.8e-15  Score=106.48  Aligned_cols=44  Identities=27%  Similarity=0.465  Sum_probs=41.3

Q ss_pred             CCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          25 PNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        25 ~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ++...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       128 ~~~~~~~~~~P~GVV~~I~p~N~P~~~~~~~~a~ALaaGN~Vv~  171 (474)
T d1wnda_         128 EGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLAPALAAGNCVVL  171 (474)
T ss_dssp             TTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCcceEEEEecccceEEEeecchHhhhhhccHHHHHHhCCCEEE
Confidence            45678999999999999999999999999999999999999984

>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: 1-pyrroline-5-carboxylate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=1.2e-14  Score=103.28  Aligned_cols=66  Identities=18%  Similarity=0.127  Sum_probs=53.6

Q ss_pred             hHHHHHHHHHHhhhcccccC-CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLD-PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~-~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++.+.+..+..... ...+...+++++|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~P~Gvv~~I~PwN~Pl~~~~~~~~~ALaaGN~Vv~  206 (516)
T d1uzba_         140 DFIEYYARAALRYRYPAVEVVPYPGEDNESFYVPLGAGVVIAPWNFPVAIFTGMIVGPVAVGNTVIA  206 (516)
T ss_dssp             HHHHHHHHHHGGGCSSCCCCCCCTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhhhhcccccccccccceeEEeeccCccccccccccccccccccccchhhhcccccc
Confidence            35678888887776543222 2235567888999999999999999999999999999999999985

>d1ad3a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.7e-14  Score=100.04  Aligned_cols=65  Identities=22%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhhhcccccC---CCCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLD---PPPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~---~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .++++++...+...+....   ...+...+++|+|+||+++|+|||||+.+..+++++||++||++|-
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GVv~~I~P~N~P~~~~~~~~~~ALaaGN~vi~  135 (446)
T d1ad3a_          68 ELDTTIKELPDWAEDEPVAKTRQTQQDDLYIHSEPLGVVLVIGAWNYPFNLTIQPMVGAVAAGNAVIL  135 (446)
T ss_dssp             HHHHHHHHHHHHHSCEECCCCSTTTTSEEEEEEEECSEEEEECCSSSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHhhcccccccCCCCCCcceEEEeecceeEecccccccccccccccccccchhcccccc
Confidence            3455555555443332111   1234467889999999999999999999999999999999999984

>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase GapN
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=99.48  E-value=2.2e-14  Score=101.41  Aligned_cols=65  Identities=18%  Similarity=0.125  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhhhcccccCC----CCCceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658           4 ALSTSAKRIQKELAEITLDP----PPNYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus         4 ~~~~~a~~a~~~~~~~~~~~----~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      .+++|++.+++..+.....+    ..+...+++|+|+|||++|+|||||+.+..+++++||++||+||-
T Consensus       120 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~P~GVV~~I~p~N~P~~~~~~~~~~ALaaGn~Vi~  188 (499)
T d1ky8a_         120 RLRLAELDLKKIGGDYIPGDWTYDTLETEGLVRREPLGVVAAITPFNYPLFDAVNKITYSFIYGNAVVV  188 (499)
T ss_dssp             HHHGGGGGGTTTCCEEEESTTSSTTTTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cccchhhhhhhhhhceeccccccccccccceeeeeccccccccccccccchhhhhcchhhhcccccccc
Confidence            34555556655554432221    224577899999999999999999999999999999999999985

>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Vibrio harveyi [TaxId: 669]

Probab=99.42  E-value=8.9e-14  Score=98.76  Aligned_cols=66  Identities=23%  Similarity=0.176  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHHhhhcccccC--------CCCCceeEEeeecCceEEEEecCCccHHhHH--HHHhhHhhcCCeEEE
Q psy3658           3 KALSTSAKRIQKELAEITLD--------PPPNYVLLENWNPLGVVGIISAFNFPVAVYG--WNAAIALPGWQVLGQ   68 (74)
Q Consensus         3 ~~~~~~a~~a~~~~~~~~~~--------~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~--~k~~~ALaaGNtvV~   68 (74)
                      ..+++|++..++..+.....        .......+.+++|+|||++|+|||||+.+..  +++++||++||+||-
T Consensus        92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~GvV~~I~PwNfPl~~~~~~~~~a~ALaaGN~VVl  167 (504)
T d1ez0a_          92 NQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIV  167 (504)
T ss_dssp             HHHHHHHHHHHHTGGGCEEEECCBTTCSSSCBCCEEEEEEECSCEEEECCSSCTTTTSTTSHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHhhhccccccccccccccccCcccceeEEEecCceEEEEecccccchhhhhhHHHHHHHHHhcccee
Confidence            35788998887765432211        1123456788999999999999999987554  699999999999984

>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Aldehyde reductase (dehydrogenase), ALDH
species: Streptococcus mutans [TaxId: 1309]

Probab=99.26  E-value=4.7e-12  Score=88.26  Aligned_cols=43  Identities=33%  Similarity=0.443  Sum_probs=40.0

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+++++|+||+++|+|||||+....+++++||++||++|-
T Consensus       133 ~~~~~~~r~P~GVV~~I~p~n~P~~~~~~~~~~aL~aGN~vV~  175 (474)
T d1euha_         133 KKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAF  175 (474)
T ss_dssp             TEEEEEEEEECSEEEEECCTTSTTHHHHHHHHHHHHTTCEEEE
T ss_pred             CceeEEEeeceeEEEEeccccccchhhhhhchhhhhcccccee
Confidence            4466889999999999999999999999999999999999984

>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Gamma-glutamyl phosphate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=2.6e-12  Score=88.63  Aligned_cols=41  Identities=12%  Similarity=-0.135  Sum_probs=37.8

Q ss_pred             eeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          28 VLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        28 ~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      ...+.++|+|++++++|||||+.+..+++++||++||++|-
T Consensus       103 ~~~~~~~~~gv~~~~~p~n~p~~~~~~~~~~alaaGN~vvl  143 (414)
T d1o20a_         103 GLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILL  143 (414)
T ss_dssp             SCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEE
T ss_pred             ccceeecccccccccccccCcHHHhhhccchheecccchhc
Confidence            45678899999999999999999999999999999999984

>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ALDH-like
superfamily: ALDH-like
family: ALDH-like
domain: Gamma-glutamyl phosphate reductase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=2.9e-06  Score=58.92  Aligned_cols=41  Identities=20%  Similarity=0.156  Sum_probs=33.9

Q ss_pred             CceeEEeeecCceEEEEecCCccHHhHHHHHhhHhhcCCeEEE
Q psy3658          26 NYVLLENWNPLGVVGIISAFNFPVAVYGWNAAIALPGWQVLGQ   68 (74)
Q Consensus        26 ~~~~~~~~~P~GVv~~I~PwN~P~~~~~~k~~~ALaaGNtvV~   68 (74)
                      +...+..+.|+||+++| |||+| .....+.+.+|.+||++|-
T Consensus       106 gl~~~~~~~P~GVigiI-~e~~P-~vt~~~~~lalksGNavIl  146 (436)
T d1vlua_         106 GLTLYQVTAPVGVLLVI-FESRP-EVIANITALSIKSGNAAIL  146 (436)
T ss_dssp             TEEEEEEEEECCEEEEE-ESSCT-HHHHHHHHHHHHHTCEEEE
T ss_pred             cceEEEeeeeeeeeecc-ccccc-hhhhhhhhcccccCCccee
Confidence            45667888999999887 67778 5677889999999999974