Psyllid ID: psy3691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYETSKDLISPKILK
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccEEEEEEccccccEEEEEEcEEEccccccEEEEEccccccccEEEEEEcccccccEEEEcccEEEEEEEccccccccEEEEEcccEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccEEEEEEEccccccEEEEEEEEEEccccccEEEEEccccccccHEEEEcccEcccccccccccEEEEEEEccccccccEEEEEcccEEEEEEEccEEEEccccHHHccHccccHHHcc
Coil and Loop (DISEMBL)
lsdksgiiidgpgnysidvkcswlidasdtpnatiRLHFNSFatecgwdhlyifdgdsvhapLLGVFSglmyegdysihrvpdvkcftitnelgntgiqivlGNDFVQLWEVGNVYLthknelyetskdlispkilk
Flexible Loop (DISEMBL)
lsdksgiiidgpgnysidVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLThknelyetskdlispkilk
Low Complexity Region (SEG)
LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYETSKDLISPKILK
Disordered region (IsUnstruct)
******IIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYE************
Disordered Region (DISOPRED)
LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGD**IHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYETSKDLISPKI**
Disordered Region (DISEMBL)
LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYETSKDLISPKILK
Disordered Region (DISPRO)
****SGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYETSKDLISPK*L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLWEVGNVYLTHKNELYETSKDLISPKILK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
O75882	1429	Attractin OS=Homo sapiens	yes	N/A	0.598	0.057	0.523	1e-21
Q99J86	1432	Attractin OS=Rattus norve	yes	N/A	0.503	0.048	0.577	1e-21
Q9WU60	1428	Attractin OS=Mus musculus	yes	N/A	0.503	0.048	0.577	1e-21
Q6A051	1378	Attractin-like protein 1	no	N/A	0.598	0.059	0.511	2e-20
Q5VV63	1379	Attractin-like protein 1	no	N/A	0.598	0.059	0.511	8e-20
Q19981	1329	Putative protein tag-53 O	yes	N/A	0.496	0.051	0.463	1e-13
Q9QYP0	2788	Multiple epidermal growth	no	N/A	0.496	0.024	0.449	6e-12
P60882	2789	Multiple epidermal growth	no	N/A	0.496	0.024	0.449	6e-12
Q7Z7M0	2845	Multiple epidermal growth	no	N/A	0.496	0.023	0.449	8e-12
Q9DER7	1008	Tolloid-like protein 1 OS	no	N/A	0.459	0.062	0.394	8e-07

>sp|O75882|ATRN_HUMAN Attractin OS=Homo sapiens GN=ATRN PE=1 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L+  SG + DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct: 138 LTGSSGFVTDGPGNYKYKTKCTWLIEGQ--PNRIMRLRFNHFATECSWDHLYVYDGDSIY 195

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           APL+  FSGL+         VP+V
Sbjct: 196 APLVAAFSGLIVPERDGNETVPEV 219

Involved in the initial immune cell clustering during inflammatory response and may regulate chemotactic activity of chemokines. May play a role in melanocortin signaling pathways that regulate energy homeostasis and hair color. Low-affinity receptor for agouti (By similarity). Has a critical role in normal myelination in the central nervous system.
Homo sapiens (taxid: 9606)

>sp|Q99J86|ATRN_RAT Attractin OS=Rattus norvegicus GN=Atrn PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L+  SG + DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct: 141 LTGSSGFVTDGPGNYKYKTKCTWLIEGQ--PNKIMRLRFNHFATECSWDHLYVYDGDSIY 198

Query: 61  APLLGVFSGLM 71
           APL+  FSGL+
Sbjct: 199 APLIAAFSGLI 209

Involved in the initial immune cell clustering during inflammatory response and may regulate chemotactic activity of chemokines (By similarity). May play a role in melanocortin signaling pathways that regulate energy homeostasis and hair color. Low-affinity receptor for agouti (By similarity). Has a critical role in normal myelination in the central nervous system.

Rattus norvegicus (taxid: 10116)

>sp|Q9WU60|ATRN_MOUSE Attractin OS=Mus musculus GN=Atrn PE=2 SV=3

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/71 (57%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L+  SG + DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct: 137 LTGSSGFVTDGPGNYKYKTKCTWLIEGQ--PNRIMRLRFNHFATECSWDHLYVYDGDSIY 194

Query: 61  APLLGVFSGLM 71
           APL+  FSGL+
Sbjct: 195 APLIAAFSGLI 205

Involved in the initial immune cell clustering during inflammatory response and may regulate chemotactic activity of chemokines (By similarity). May play a role in melanocortin signaling pathways that regulate energy homeostasis and hair color. Low-affinity receptor for agouti. Has a critical role in normal myelination in the central nervous system.

Mus musculus (taxid: 10090)

>sp|Q6A051|ATRN1_MOUSE Attractin-like protein 1 OS=Mus musculus GN=Atrnl1 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L++ SG + DGP NY    KC+WLI+    PNA +RL FN FATEC WDH+Y++DGDS++
Sbjct: 98  LTEPSGYLTDGPINYKYKTKCTWLIEG--YPNAVLRLRFNHFATECSWDHMYVYDGDSIY 155

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           APL+ V SGL+         VP+V
Sbjct: 156 APLVAVLSGLIVPEVRGNETVPEV 179

May play a role in melanocortin signaling pathways that regulate energy homeostasis.

Mus musculus (taxid: 10090)

>sp|Q5VV63|ATRN1_HUMAN Attractin-like protein 1 OS=Homo sapiens GN=ATRNL1 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 2/84 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L++ SG + DGP NY    KC+WLI+    PNA +RL FN FATEC WDH+Y++DGDS++
Sbjct: 99  LTEPSGYLTDGPINYKYKTKCTWLIEG--YPNAVLRLRFNHFATECSWDHMYVYDGDSIY 156

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           APL+ V SGL+         VP+V
Sbjct: 157 APLIAVLSGLIVPEIRGNETVPEV 180

May play a role in melanocortin signaling pathways that regulate energy homeostasis.

Homo sapiens (taxid: 9606)

>sp|Q19981|TAG53_CAEEL Putative protein tag-53 OS=Caenorhabditis elegans GN=tag-53 PE=1 SV=3

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           +SD +  I DGP +YS   KC+WLI+  ++    +++  NSF TECGWD+LYI+DGDSV+
Sbjct: 100 ISDNASYISDGPLDYSPSAKCTWLIEPENSATP-LKIRINSFFTECGWDYLYIYDGDSVY 158

Query: 61  APLLGVFSG 69
              L    G
Sbjct: 159 GKQLAALCG 167

Caenorhabditis elegans (taxid: 6239)

>sp|Q9QYP0|MEGF8_RAT Multiple epidermal growth factor-like domains protein 8 OS=Rattus norvegicus GN=Megf8 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L +  G + DG GNYS++  C WLI+A  +P   I L F    TEC +D+L+++DGDS  
Sbjct: 37  LREAPGFVTDGAGNYSVNGNCEWLIEAP-SPQHRILLDFLFLDTECTYDYLFVYDGDSPQ 95

Query: 61  APLLGVFSG 69
            PLL   SG
Sbjct: 96  GPLLASLSG 104

Rattus norvegicus (taxid: 10116)

>sp|P60882|MEGF8_MOUSE Multiple epidermal growth factor-like domains protein 8 OS=Mus musculus GN=Megf8 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L +  G + DG GNYS++  C WLI+A  +P   I L F    TEC +D+L+++DGDS  
Sbjct: 37  LREAPGFVTDGAGNYSVNGNCEWLIEAP-SPQHRILLDFLFLDTECTYDYLFVYDGDSPQ 95

Query: 61  APLLGVFSG 69
            PLL   SG
Sbjct: 96  GPLLASLSG 104

Mus musculus (taxid: 10090)

>sp|Q7Z7M0|MEGF8_HUMAN Multiple epidermal growth factor-like domains protein 8 OS=Homo sapiens GN=MEGF8 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L +  G + DG GNYS++  C WLI+A  +P   I L F    TEC +D+L+++DGDS  
Sbjct: 37  LREAPGFVTDGAGNYSVNGNCEWLIEAP-SPQHRILLDFLFLDTECTYDYLFVYDGDSPR 95

Query: 61  APLLGVFSG 69
            PLL   SG
Sbjct: 96  GPLLASLSG 104

Homo sapiens (taxid: 9606)

>sp|Q9DER7|TLL1_CHICK Tolloid-like protein 1 OS=Gallus gallus GN=TLL1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 8/71 (11%)

Query: 5   SGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFA----TECGWDHLYIFDGDS 58
           +GII+  + P  Y    +C+W I A  TP   ++L FN F      EC +DHL +FDG+S
Sbjct: 777 NGIIMSPNWPDKYPSRKECTWEISA--TPGQRVKLTFNEFEIEQHQECAYDHLEVFDGES 834

Query: 59  VHAPLLGVFSG 69
             +P+LG   G
Sbjct: 835 EKSPILGRLCG 845

Protease which processes procollagen C-propeptides, such as chordin, probiglycan and prolysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
328713784	1311	PREDICTED: attractin-like protein 1-like	0.613	0.064	0.690	2e-28
189241411	1253	PREDICTED: similar to AGAP003506-PA [Tri	0.620	0.067	0.647	3e-28
345479397	1312	PREDICTED: attractin-like protein 1-like	0.598	0.062	0.690	6e-28
242018001	1255	Attractin precursor, putative [Pediculus	0.598	0.065	0.702	5e-27
380024386	1288	PREDICTED: attractin-like protein 1-like	0.598	0.063	0.654	2e-26
328779280	1199	PREDICTED: distracted [Apis mellifera]	0.598	0.068	0.654	2e-26
170042523	1264	attractin [Culex quinquefasciatus] gi|16	0.708	0.076	0.535	3e-26
157115796	1211	attractin [Aedes aegypti] gi|108876769|g	0.613	0.069	0.587	7e-26
157115798	1207	attractin [Aedes aegypti] gi|108876770|g	0.613	0.069	0.587	7e-26
383851782	1289	PREDICTED: attractin-like protein 1-like	0.598	0.063	0.642	8e-26

>gi|328713784|ref|XP_001944083.2| PREDICTED: attractin-like protein 1-like [Acyrthosiphon pisum]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 70/84 (83%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L+  SG I DG GNYS+DVKCSWLI+A ++ N+TIRLHF  F TECGWDHLYI+DGDSVH
Sbjct: 92  LNGTSGFISDGIGNYSLDVKCSWLIEAGNSTNSTIRLHFEEFITECGWDHLYIYDGDSVH 151

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           +PLLGV+SGLMY  DYS+  VP++
Sbjct: 152 SPLLGVYSGLMYSKDYSLQSVPEI 175

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241411|ref|XP_970340.2| PREDICTED: similar to AGAP003506-PA [Tribolium castaneum] gi|270014130|gb|EFA10578.1| hypothetical protein TcasGA2_TC012834 [Tribolium castaneum]

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/88 (64%), Positives = 68/88 (77%), Gaps = 3/88 (3%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L   +G I DG GNYS+ VKCSWLIDA   PN +I LH   FATECGWDHLYIFDGDSV 
Sbjct: 77  LGTSTGTIHDGLGNYSLSVKCSWLIDA---PNTSITLHLEEFATECGWDHLYIFDGDSVD 133

Query: 61  APLLGVFSGLMYEGDYSIHRVPDVKCFT 88
           +PLL VFSGLMY+GDY+I R+P++  ++
Sbjct: 134 SPLLAVFSGLMYKGDYNIRRIPEIVAYS 161

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479397|ref|XP_001606408.2| PREDICTED: attractin-like protein 1-like [Nasonia vitripennis]

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/84 (69%), Positives = 69/84 (82%), Gaps = 2/84 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           LS+ SG I DG GNY+ DVKCSWLI++  T N++IR+H   FATECGWDHLYIFDGDSV 
Sbjct: 125 LSEPSGSIHDGVGNYTTDVKCSWLIES--TVNSSIRMHIEEFATECGWDHLYIFDGDSVE 182

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           APLLGVF+GLM++ DY I RVP+V
Sbjct: 183 APLLGVFTGLMHKDDYHIRRVPEV 206

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018001|ref|XP_002429472.1| Attractin precursor, putative [Pediculus humanus corporis] gi|212514404|gb|EEB16734.1| Attractin precursor, putative [Pediculus humanus corporis]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 2/84 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           LS+  GII DG GNYSIDVKCSWLIDA    NA++RLH   FATECGWDHLYIFDGDSV+
Sbjct: 76  LSEPYGIIHDGVGNYSIDVKCSWLIDAGT--NASVRLHLEEFATECGWDHLYIFDGDSVN 133

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           +PLL VFSGLMY+  YS+ R+P++
Sbjct: 134 SPLLAVFSGLMYKDGYSVKRIPEI 157

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024386|ref|XP_003695980.1| PREDICTED: attractin-like protein 1-like [Apis florea]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 2/84 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L++ +G I DG GNY+ DVKCSWLI++S  PN+TIR+H   FATECGWDH+YI+DGDSV 
Sbjct: 103 LTEPTGNIHDGIGNYTADVKCSWLIESS--PNSTIRMHVEQFATECGWDHMYIYDGDSVE 160

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           APLL VFSGLM++  Y I RVP+V
Sbjct: 161 APLLAVFSGLMHKDGYHIRRVPEV 184

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779280|ref|XP_397194.4| PREDICTED: distracted [Apis mellifera]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 2/84 (2%)

Query: 1  LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
          L++ +G I DG GNY+ DVKCSWLI++S  PN+TIR+H   FATECGWDH+YI+DGDSV 
Sbjct: 15 LTEPTGNIHDGIGNYTADVKCSWLIESS--PNSTIRMHVEQFATECGWDHMYIYDGDSVE 72

Query: 61 APLLGVFSGLMYEGDYSIHRVPDV 84
          APLL VFSGLM++  Y I RVP+V
Sbjct: 73 APLLAVFSGLMHKDGYHIRRVPEV 96

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170042523|ref|XP_001848972.1| attractin [Culex quinquefasciatus] gi|167866072|gb|EDS29455.1| attractin [Culex quinquefasciatus]

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/112 (53%), Positives = 73/112 (65%), Gaps = 15/112 (13%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPN------------ATIRLHFNSFATECGW 48
           L+D SG I DG GNYSI VKCSWLIDA D  +            + IRLH   FATECGW
Sbjct: 85  LTDPSGSIHDGLGNYSIGVKCSWLIDARDHNSIAAAQTTAIAKPSVIRLHLEEFATECGW 144

Query: 49  DHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDV---KCFTITNELGNTG 97
           DHLY++DGDSV +PLL VFSGLMY  ++SI R+P++    C T+   L  +G
Sbjct: 145 DHLYVYDGDSVESPLLAVFSGLMYRKNFSIRRIPELPVNACPTVDTALNCSG 196

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115796|ref|XP_001652701.1| attractin [Aedes aegypti] gi|108876769|gb|EAT40994.1| AAEL007331-PA [Aedes aegypti]

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 13/97 (13%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASD--------TPNAT-----IRLHFNSFATECG 47
           L+D SG + DG GNYSI VKCSWLIDA D        +P  +     IRLH   FATECG
Sbjct: 7   LTDPSGSVHDGLGNYSIGVKCSWLIDARDHNSIADKLSPAGSGKPSVIRLHLEEFATECG 66

Query: 48  WDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDV 84
           WDHLY++DGDSV +PLL VFSGLMY  ++SI R+P+V
Sbjct: 67  WDHLYVYDGDSVESPLLAVFSGLMYRKNFSIRRIPEV 103

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157115798|ref|XP_001652702.1| attractin [Aedes aegypti] gi|108876770|gb|EAT40995.1| AAEL007331-PB [Aedes aegypti]

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 68/97 (70%), Gaps = 13/97 (13%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASD--------TPNAT-----IRLHFNSFATECG 47
           L+D SG + DG GNYSI VKCSWLIDA D        +P  +     IRLH   FATECG
Sbjct: 7   LTDPSGSVHDGLGNYSIGVKCSWLIDARDHNSIADKLSPAGSGKPSVIRLHLEEFATECG 66

Query: 48  WDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRVPDV 84
           WDHLY++DGDSV +PLL VFSGLMY  ++SI R+P+V
Sbjct: 67  WDHLYVYDGDSVESPLLAVFSGLMYRKNFSIRRIPEV 103

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851782|ref|XP_003701410.1| PREDICTED: attractin-like protein 1-like [Megachile rotundata]

 Score =  121 bits (304), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 66/84 (78%), Gaps = 2/84 (2%)

Query: 1   LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
           L+  +G I DG GNY+ DV+CSWLI+  + PN+TIR+H   FATECGWDHLYI+DGDSV 
Sbjct: 103 LTGPTGYIHDGIGNYTADVRCSWLIE--NNPNSTIRMHVEQFATECGWDHLYIYDGDSVE 160

Query: 61  APLLGVFSGLMYEGDYSIHRVPDV 84
           APLL VFSGLM++  Y I RVP+V
Sbjct: 161 APLLAVFSGLMHKDGYHIRRVPEV 184

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
FB|FBgn0039528	1323	dsd "distracted" [Drosophila m	0.576	0.059	0.622	5.7e-23
UNIPROTKB|F1P2W2	1296	ATRN "Uncharacterized protein"	0.598	0.063	0.547	6.7e-22
ZFIN|ZDB-GENE-090312-21	1383	atrn "attractin" [Danio rerio	0.598	0.059	0.535	1.3e-20
UNIPROTKB|F1S8B6	1416	ATRN "Uncharacterized protein"	0.598	0.057	0.547	3.7e-20
ZFIN|ZDB-GENE-081028-60	1400	atrnl1a "attractin-like 1a" [D	0.598	0.058	0.523	7.6e-20
UNIPROTKB|Q8MJ16	1415	ATRN "Uncharacterized protein"	0.598	0.057	0.535	9.8e-20
UNIPROTKB|F1Q117	1417	ATRN "Uncharacterized protein"	0.598	0.057	0.523	9.8e-20
UNIPROTKB|O75882	1429	ATRN "Attractin" [Homo sapiens	0.598	0.057	0.523	1.3e-19
ZFIN|ZDB-GENE-030131-8092	1364	atrnl1b "attractin-like 1b" [D	0.605	0.060	0.517	1.5e-19
MGI|MGI:1341628	1428	Atrn "attractin" [Mus musculus	0.627	0.060	0.494	2.1e-19

FB|FBgn0039528 dsd "distracted" [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 5.7e-23, P = 5.7e-23
 Identities = 56/90 (62%), Positives = 64/90 (71%)

Query:     6 GIIIDGPGNYSIDVKCSWLIDA---------SDTPNAT--IRLHFNSFATECGWDHLYIF 54
             G I DG GNYS+ VKCSWLIDA         +  P+ T  IR+H   FATECGWDHLYI+
Sbjct:    97 GTIHDGWGNYSVSVKCSWLIDARHPHWNRRHNTNPSRTANIRIHLREFATECGWDHLYIY 156

Query:    55 DGDSVHAPLLGVFSGLMYEGDYSIHRVPDV 84
             DGDSV +PLL VFSGLMY G++SI RVP V
Sbjct:   157 DGDSVDSPLLAVFSGLMYRGNFSIRRVPQV 186

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008039 "synaptic target recognition" evidence=IMP

UNIPROTKB|F1P2W2 ATRN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 6.7e-22, Sum P(2) = 6.7e-22
 Identities = 46/84 (54%), Positives = 58/84 (69%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L++ SG + DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct:     3 LTEPSGYVTDGPGNYKYKTKCTWLIEGR--PNTILRLRFNHFATECSWDHLYVYDGDSIY 60

Query:    61 APLLGVFSGLMYEGDYSIHRVPDV 84
             APLL  FSGL+     S   VP+V
Sbjct:    61 APLLAAFSGLIVPEKDSNETVPEV 84

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

ZFIN|ZDB-GENE-090312-21 atrn "attractin" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/84 (53%), Positives = 58/84 (69%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L+  SG + DGPGNY    KC+WLI+    PN+ +RL F  FATEC WDHLY++DGDS++
Sbjct:    89 LTGPSGYLSDGPGNYKYKTKCTWLIEGQ--PNSILRLRFEHFATECSWDHLYVYDGDSIY 146

Query:    61 APLLGVFSGLMYEGDYSIHRVPDV 84
             +PLL  FSGL+    YS   VP+V
Sbjct:   147 SPLLAAFSGLIVPESYSNETVPEV 170

GO:0016020 "membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1S8B6 ATRN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 3.7e-20, P = 3.7e-20
 Identities = 46/84 (54%), Positives = 57/84 (67%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L+  SG I DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct:   125 LTGSSGFITDGPGNYKYKTKCTWLIEGQ--PNRIMRLRFNHFATECSWDHLYVYDGDSIY 182

Query:    61 APLLGVFSGLMYEGDYSIHRVPDV 84
             APL+  FSGL+     S   VP+V
Sbjct:   183 APLVAAFSGLIVPERDSNETVPEV 206

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

ZFIN|ZDB-GENE-081028-60 atrnl1a "attractin-like 1a" [Danio rerio (taxid:7955)]

 Score = 250 (93.1 bits), Expect = 7.6e-20, P = 7.6e-20
 Identities = 44/84 (52%), Positives = 58/84 (69%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L++ SG + DGP NY    KC+WLI+    PNA +RL FN FATEC WDH+Y+FDGDS++
Sbjct:    79 LTESSGSLTDGPVNYKYKTKCTWLIEGY--PNAVLRLRFNHFATECSWDHMYVFDGDSIY 136

Query:    61 APLLGVFSGLMYEGDYSIHRVPDV 84
             APL+ VFSGL+         +P+V
Sbjct:   137 APLVAVFSGLVVPETKGNETIPEV 160

GO:0004872 "receptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8MJ16 ATRN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 9.8e-20, P = 9.8e-20
 Identities = 45/84 (53%), Positives = 56/84 (66%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L+  SG I DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct:   125 LTGSSGFITDGPGNYKYKTKCTWLIEGQ--PNRIMRLRFNHFATECSWDHLYVYDGDSIY 182

Query:    61 APLLGVFSGLMYEGDYSIHRVPDV 84
             APL+  FSGL+         VP+V
Sbjct:   183 APLVAAFSGLIVPERDGNETVPEV 206

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

UNIPROTKB|F1Q117 ATRN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 249 (92.7 bits), Expect = 9.8e-20, P = 9.8e-20
 Identities = 44/84 (52%), Positives = 56/84 (66%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L+  SG + DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct:   126 LTGSSGFVTDGPGNYKYKTKCTWLIEGQ--PNRIMRLRFNHFATECSWDHLYVYDGDSIY 183

Query:    61 APLLGVFSGLMYEGDYSIHRVPDV 84
             APL+  FSGL+         VP+V
Sbjct:   184 APLIAAFSGLIVPERDGNETVPEV 207

GO:0016021 "integral to membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

UNIPROTKB|O75882 ATRN "Attractin" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 44/84 (52%), Positives = 56/84 (66%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L+  SG + DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct:   138 LTGSSGFVTDGPGNYKYKTKCTWLIEGQ--PNRIMRLRFNHFATECSWDHLYVYDGDSIY 195

Query:    61 APLLGVFSGLMYEGDYSIHRVPDV 84
             APL+  FSGL+         VP+V
Sbjct:   196 APLVAAFSGLIVPERDGNETVPEV 219

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0006954 "inflammatory response" evidence=IEA

GO:0004872 "receptor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

GO:0005886 "plasma membrane" evidence=NAS

GO:0005887 "integral to plasma membrane" evidence=TAS

ZFIN|ZDB-GENE-030131-8092 atrnl1b "attractin-like 1b" [Danio rerio (taxid:7955)]

 Score = 247 (92.0 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/85 (51%), Positives = 59/85 (69%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L++ SG + DGP NY    KC+WLI+    PNA +RL FN FATEC WDH+Y++DGDS++
Sbjct:    80 LTEPSGYLTDGPINYKFKTKCTWLIEGY--PNAVLRLRFNHFATECSWDHMYVYDGDSIY 137

Query:    61 APLLGVFSGLMYEGDYSIHRVPDVK 85
             APL+ VFSGL+         VP+V+
Sbjct:   138 APLVAVFSGLIVPEVKGNETVPEVE 162

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1341628 Atrn "attractin" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 45/91 (49%), Positives = 59/91 (64%)

Query:     1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
             L+  SG + DGPGNY    KC+WLI+    PN  +RL FN FATEC WDHLY++DGDS++
Sbjct:   137 LTGSSGFVTDGPGNYKYKTKCTWLIEGQ--PNRIMRLRFNHFATECSWDHLYVYDGDSIY 194

Query:    61 APLLGVFSGLMYEGDYSIHRVPDVKCFTITN 91
             APL+  FSGL+          P+V   T+T+
Sbjct:   195 APLIAAFSGLIVPERDGNETAPEV---TVTS 222

GO:0004872 "receptor activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006954 "inflammatory response" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0021549 "cerebellum development" evidence=IMP

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

GO:0042552 "myelination" evidence=IMP

GO:0043473 "pigmentation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WU60	ATRN_MOUSE	No assigned EC number	0.5774	0.5036	0.0483	yes	N/A
O75882	ATRN_HUMAN	No assigned EC number	0.5238	0.5985	0.0573	yes	N/A
Q99J86	ATRN_RAT	No assigned EC number	0.5774	0.5036	0.0481	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
cd00041	113	cd00041, CUB, CUB domain; extracellular domain; pr	4e-13
smart00042	102	smart00042, CUB, Domain first found in C1r, C1s, u	6e-11
pfam00431	110	pfam00431, CUB, CUB domain	3e-10

>gnl|CDD|238001 cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

 Score = 60.9 bits (148), Expect = 4e-13
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 2  SDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFD 55
          +  SG I   + P NY  ++ C W I+A   P   IRL F  F  E    C +D+L I+D
Sbjct: 7  ASTSGTISSPNYPNNYPNNLNCVWTIEA--PPGYRIRLTFEDFDLESSPNCSYDYLEIYD 64

Query: 56 GDSVHAPLLGVFSG 69
          G S  +PLLG F G
Sbjct: 65 GPSTSSPLLGRFCG 78

Length = 113

>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

 Score = 55.1 bits (133), Expect = 6e-11
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
          P +Y  ++ C W I A   P   I L F  F  E    C +D++ I+DG S  +PLLG F
Sbjct: 9  PQSYPNNLDCVWTIRA--PPGYRIELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRF 66

Query: 68 SG 69
           G
Sbjct: 67 CG 68

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain. Length = 102

>gnl|CDD|215916 pfam00431, CUB, CUB domain

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 1  LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSF----ATECGWDHLYIF 54
          L++ SG I   + P +Y  +  C W I A   P   I L F  F      ECG+D++ I 
Sbjct: 5  LTESSGSITSPNYPNSYPPNKDCVWTIRA--PPGYRISLTFQDFDLEDHDECGYDYVEIR 62

Query: 55 DGDSVHAPLLGVFSG 69
          DG    +PLLG F G
Sbjct: 63 DGLPSSSPLLGRFCG 77

Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	99.91
cd00041	113	CUB CUB domain; extracellular domain; present in p	99.9
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	99.89
KOG4586|consensus	156		99.75
KOG4292|consensus	454		98.79
PF05428	311	CRF-BP: Corticotropin-releasing factor binding pro	97.54
PF02408	120	CUB_2: CUB-like domain; InterPro: IPR003366 This d	97.07
KOG4292|consensus	454		95.67

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=99.91  E-value=8.6e-24  Score=137.82  Aligned_cols=100  Identities=32%  Similarity=0.514  Sum_probs=90.4

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCC
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG   74 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~   74 (137)
                      +++.+|.|++  ||..|+.+.+|.|.|++++  +++|+|+|..|+++    |..|+|+|++|.......++++||...|.
T Consensus         5 ~~~~~g~i~Sp~yp~~y~~~~~C~w~i~~~~--~~~I~l~f~~~~~~~~~~c~~d~l~v~~g~~~~~~~~~~~cg~~~~~   82 (110)
T PF00431_consen    5 LTNNSGIISSPNYPSNYPSNSDCTWTITAPP--GHRIRLTFLSFDLESSDSCCQDYLEVYDGNDESSPLLGRFCGSSPPP   82 (110)
T ss_dssp             ECSSEEEEESTTTTS-SSSSEEEEEEEE-ST--TEEEEEEEEEEEB--TTTSTSSEEEEESSSSTTSEEEEEESSSSCCE
T ss_pred             EECCeEEEECCCCCCCCCCCCcEeEEEEecc--cceeeeccccccceeeeeecccceeEEeeccccceeeeeccCCcCCc
Confidence            3678899996  9999999999999999998  99999999999998    88999999999988888999999987788


Q ss_pred             CeEEeCCeEEEEEEcCCCcCCCCeEEEE
Q psy3691          75 DYSIHRVPDVKCFTITNELGNTGIQIVL  102 (137)
Q Consensus        75 ~~~s~~~~~~v~f~sd~~~~~~GF~~~y  102 (137)
                      .+.+.++.++|.|.++......||+++|
T Consensus        83 ~i~s~~~~l~i~f~s~~~~~~~gF~~~y  110 (110)
T PF00431_consen   83 SIISSSNSLFIRFHSDSSNSSRGFKATY  110 (110)
T ss_dssp             EEEESSSEEEEEEEESSSSTTSEEEEEE
T ss_pred             cEEECCCEEEEEEEECCCCCCccEEEEC
Confidence            8899999999999999999999999987

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=99.90  E-value=5.7e-23  Score=134.36  Aligned_cols=97  Identities=32%  Similarity=0.552  Sum_probs=90.2

Q ss_pred             cEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCCCeEE
Q psy3691           5 SGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSI   78 (137)
Q Consensus         5 ~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s   78 (137)
                      .|.|+|  ||..|+++.+|.|.|+++.  |.+|.|+|.+|+++    |..|+|+||||.......++++||...|..+.+
T Consensus        10 ~g~i~Sp~~p~~~~~~~~C~w~i~~~~--g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~s   87 (113)
T cd00041          10 SGTISSPNYPNNYPNNLNCVWTIEAPP--GYRIRLTFEDFDLESSPNCSYDYLEIYDGPSTSSPLLGRFCGSTLPPPIIS   87 (113)
T ss_pred             CeEEECCCCCCCCCCCCcEEEEEEcCC--CCEEEEEEeCcccccCCCCCCcEEEEEcCCCCccccceeeECCCCCCCEEe
Confidence            899996  9999999999999999998  99999999999998    999999999998766678899999988888888


Q ss_pred             eCCeEEEEEEcCCCcCCCCeEEEEE
Q psy3691          79 HRVPDVKCFTITNELGNTGIQIVLG  103 (137)
Q Consensus        79 ~~~~~~v~f~sd~~~~~~GF~~~y~  103 (137)
                      .++.+.+.|.++....+.||++.|+
T Consensus        88 ~~~~~~i~f~s~~~~~~~GF~~~y~  112 (113)
T cd00041          88 SGNSLTVRFRSDSSVTGRGFKATYS  112 (113)
T ss_pred             cCCEEEEEEEeCCCCCCCCEEEEEE
Confidence            8899999999998889999999997

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=99.89  E-value=3e-22  Score=129.35  Aligned_cols=95  Identities=29%  Similarity=0.518  Sum_probs=83.6

Q ss_pred             EEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCCC-eEE
Q psy3691           6 GIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEGD-YSI   78 (137)
Q Consensus         6 G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~~-~~s   78 (137)
                      |.|+|  ||..||++.+|.|.|++++  |.+|+|+|..|+++    |..|+|+|++|.......++++||...|.. +.+
T Consensus         1 G~i~Sp~yP~~y~~~~~C~w~i~~~~--g~~i~l~f~~~~l~~~~~C~~d~l~i~~g~~~~~~~~~~~Cg~~~~~~~~~s   78 (102)
T smart00042        1 GTITSPNYPQSYPNNLDCVWTIRAPP--GYRIELQFTDFDLESSDNCEYDYVEIYDGPSASSPLLGRFCGSELPPPVISS   78 (102)
T ss_pred             CEEeCCCCCcCCCCCCcEEEEEECCC--CeEEEEEEEEEeccCCCCeeEeEEEEEeCCCCCCceeEEEecCcCCCCeEEc
Confidence            67875  9999999999999999998  99999999999995    889999999998766677899999886554 566


Q ss_pred             eCCeEEEEEEcCCCcCCCCeEEEE
Q psy3691          79 HRVPDVKCFTITNELGNTGIQIVL  102 (137)
Q Consensus        79 ~~~~~~v~f~sd~~~~~~GF~~~y  102 (137)
                      .++.+.+.|.++......||+++|
T Consensus        79 ~~n~~~i~f~s~~~~~~~GF~~~y  102 (102)
T smart00042       79 SSNSLTVTFVSDSSVQKRGFSARY  102 (102)
T ss_pred             CCCEEEEEEEeCCCCCCCCeEEEC
Confidence            688899999999888889999986

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>KOG4586|consensus

Probab=99.75  E-value=2e-18  Score=114.57  Aligned_cols=98  Identities=19%  Similarity=0.291  Sum_probs=89.1

Q ss_pred             cEEEE--eCCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEe----eeeceEEEEecCCCCCCceeEEeeCCccCCCeE
Q psy3691           5 SGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFAT----ECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYS   77 (137)
Q Consensus         5 ~G~i~--syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~l----ec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~   77 (137)
                      .+.++  |||+.||++.+|...|.+..  -+-|.+.|+ .|.+    ||..|++||.||+-..++++++|||...|+.+.
T Consensus        49 ~~Iftspn~ps~ypp~r~cv~vi~~~p--~~~ve~~Fde~y~IEps~EC~fD~iEvrDGpfGFSPlI~rfCG~~nPp~Ir  126 (156)
T KOG4586|consen   49 FNIFTSPNFPSRYPPNRDCVRVIHSRP--QHDVEVKFDEVYHIEPSYECPFDFIEVRDGPFGFSPLIARFCGDRNPPEIR  126 (156)
T ss_pred             cceEecCCccccCCCCcceEEeEeccc--ccceEEeeeeeEEecccccCCCCcccccCCCcCccHHHHHHhccCCChhhe
Confidence            34555  49999999999999999986  788999997 5776    599999999999999999999999999999999


Q ss_pred             EeCCeEEEEEEcCCCcCCCCeEEEEEe
Q psy3691          78 IHRVPDVKCFTITNELGNTGIQIVLGN  104 (137)
Q Consensus        78 s~~~~~~v~f~sd~~~~~~GF~~~y~~  104 (137)
                      +.+..+|+.|.+|++....||.++|.-
T Consensus       127 s~grFlWIkF~sD~ele~~gfsa~y~~  153 (156)
T KOG4586|consen  127 SVGRFLWIKFRSDSELEYQGFSAEYAI  153 (156)
T ss_pred             ecCcEEEEEEcccchhhhcccceeeec
Confidence            999999999999999999999999963

>KOG4292|consensus

Probab=98.79  E-value=1.6e-08  Score=80.01  Aligned_cols=76  Identities=26%  Similarity=0.399  Sum_probs=60.6

Q ss_pred             CcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEe----eeeceEEEEecCCCCCCceeEEeeCCccCCCeE
Q psy3691           4 KSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFAT----ECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYS   77 (137)
Q Consensus         4 ~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~l----ec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~   77 (137)
                      ..|.+++  ||..|+++.+|+|++.++.  ++.|.+.|+.|.+    +|.+||+....|+.....++++.|+...+....
T Consensus       299 ~~G~~~Sp~yp~~y~~~l~Ct~~l~~~~--g~~l~v~fh~~~~~~s~~C~~d~l~~r~~~~~~~~l~g~~~~~ls~~~~s  376 (454)
T KOG4292|consen  299 KFGNLTSPGYPQNYPNNLDCTTHLTVPG--GHTLVVFFHEFSIENSRECINDYLVLRNGNSGNGPLLGPHGAGLSPELVS  376 (454)
T ss_pred             ceeEEcCCCCcccCCCCCcceEEEEcCC--CCEEEEEeecccchhhhhhccceEEeccCCCCCCCccCcccCCCCccccc
Confidence            4688885  9999999999999999999  9999999888854    599999999999888888888844444444344


Q ss_pred             EeCC
Q psy3691          78 IHRV   81 (137)
Q Consensus        78 s~~~   81 (137)
                      +.+.
T Consensus       377 s~s~  380 (454)
T KOG4292|consen  377 SASL  380 (454)
T ss_pred             cccc
Confidence            4333

>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP)

Probab=97.54  E-value=0.001  Score=50.52  Aligned_cols=85  Identities=16%  Similarity=0.255  Sum_probs=63.4

Q ss_pred             CCCCeeEEEEEeCCCCCcEEEEEeCeEEeeee-ceEEEEecCCCCCCc--------------eeEEeeCCccCC-CeEEe
Q psy3691          16 SIDVKCSWLIDASDTPNATIRLHFNSFATECG-WDHLYIFDGDSVHAP--------------LLGVFSGLMYEG-DYSIH   79 (137)
Q Consensus        16 p~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~-~D~l~I~dg~~~~~~--------------~l~~~cG~~~p~-~~~s~   79 (137)
                      .+...|-=.+.+..  +..|.++|..+|+.|. .|+|.|+||..-++.              ....||+..... .+.|+
T Consensus        76 ~pq~~Ca~y~iaeP--d~~IeI~~~~vdidC~~G~ll~v~DGW~LnGe~FPs~~DHplpl~eR~~efC~~~~~~~~~rSS  153 (311)
T PF05428_consen   76 RPQLVCAAYFIAEP--DELIEIEFDHVDIDCEGGDLLKVFDGWELNGEKFPSSQDHPLPLEERYTEFCDSGPNRRSFRSS  153 (311)
T ss_pred             CCCceeEEEEEeCC--CeEEEEEEEEeeccCCCCCEEEEEeceEECccCCcCcccCCCchHHHHHHhccCCCCcceeEec
Confidence            45778876666664  8999999999999999 799999999542221              124589985543 57888


Q ss_pred             CCeEEEEEEcCCCcCCCCeEEEEEe
Q psy3691          80 RVPDVKCFTITNELGNTGIQIVLGN  104 (137)
Q Consensus        80 ~~~~~v~f~sd~~~~~~GF~~~y~~  104 (137)
                      .|..+++|.-.  ..++||.++.+.
T Consensus       154 QNvAmi~fRip--~~GsgFt~~vR~  176 (311)
T PF05428_consen  154 QNVAMIQFRIP--SPGSGFTLTVRF  176 (311)
T ss_pred             cceEEEEEEec--CCCCceEEEEEe
Confidence            99999999754  567788876653

Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].

>PF02408 CUB_2: CUB-like domain; InterPro: IPR003366 This domain is found in a family of hypothetical Caenorhabditis elegans proteins

Probab=97.07  E-value=0.0092  Score=39.67  Aligned_cols=41  Identities=10%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCC
Q psy3691          14 NYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDS   58 (137)
Q Consensus        14 ~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~   58 (137)
                      .+|.+.+|.|.|.+|.  |..++|++.. ++.- .|.+.|.|...
T Consensus        37 ~~p~n~~C~y~i~iP~--G~~a~v~~~~-~~~~-~d~i~v~D~~g   77 (120)
T PF02408_consen   37 QFPANQNCTYQINIPK--GYYAKVTLSA-NLND-NDSITVTDSNG   77 (120)
T ss_pred             ccCCCCceEEEEEcCC--ceEEEEEEEE-ecCC-CCEEEEEecCC
Confidence            4789999999999998  9999998752 2222 79999998643

The aligned region has no known function nor do any of the proteins which possess it. However, this domain is related to the CUB domain (IPR000859 from INTERPRO). The aligned region is approximately 130 amino acids long and contains two conserved cysteine residues.

>KOG4292|consensus

Probab=95.67  E-value=0.0098  Score=47.80  Aligned_cols=100  Identities=21%  Similarity=0.180  Sum_probs=77.4

Q ss_pred             EEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEe-------------------------e-eeceEEEEecCC
Q psy3691           6 GIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFAT-------------------------E-CGWDHLYIFDGD   57 (137)
Q Consensus         6 G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~l-------------------------e-c~~D~l~I~dg~   57 (137)
                      +.+.+  +|..|+...+|...|.-..  -..+.+.+..+++                         . +....+.++.+.
T Consensus        36 ~~v~~~~~~~~~~ap~~~~~~~s~~~--~~~~~~~~v~~~~s~~~~~~~~~~d~~~~~~~~a~~s~a~~~~~~~~~~v~~  113 (454)
T KOG4292|consen   36 GFVESPGYPGAVNAPLDCIFNISDAA--SNVIQLSFVSFDLSIKNLLSKQCLDSNLLVALVARHSRASPLDRLLGLYVGL  113 (454)
T ss_pred             ccccCCCCcccccCCcccccCCCCcc--cceeeeehhhhhhhhhhhhhhhhhhccchhhhhcccCcCccchhhhcccccc
Confidence            44443  7888888888888887776  6788877776643                         1 335566788888


Q ss_pred             CCCCceeEEeeCCccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeee
Q psy3691          58 SVHAPLLGVFSGLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFV  107 (137)
Q Consensus        58 ~~~~~~l~~~cG~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~  107 (137)
                      +.+..+.+++||...|..+.+..++..+.|.++-.....||...++.-+.
T Consensus       114 s~n~~l~~~~~~~t~p~~~es~~~~~~q~~~~~l~a~~~~~~~t~~~~~~  163 (454)
T KOG4292|consen  114 SENANLAGTQCGSTVPGPFESSRGFLGQQFISDLLAEREGFSATPTYMDM  163 (454)
T ss_pred             cccccccccccCCcCCccccccCCccceEEechhhccccccCCccccccC
Confidence            88888999999999999999988888888888877888888777765443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	5e-14
1nzi_A	159	Complement C1S component; calcium, innate immunity	4e-13
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	5e-13
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	2e-12
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	6e-11
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	6e-10
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	2e-09
1szb_A	170	Mannose binding lectin-associated serine protease-	2e-12
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	5e-12
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	3e-10
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	5e-12
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	2e-07
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	2e-11
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	3e-11
3dem_A	278	Complement factor MAsp-3; complement system, innat	5e-11
3dem_A	278	Complement factor MAsp-3; complement system, innat	1e-07
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	4e-10
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	5e-10
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	6e-10
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	1e-07
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	4e-08

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens} Length = 149

 Score = 63.6 bits (155), Expect = 5e-14
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 1  LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIF 54
           +D   I      P  Y  +  C W I         I L F  F  E    C  D++ I+
Sbjct: 11 FTDPKQIFKSPGFPNEYEDNQICYWHIRLK--YGQRIHLSFLDFDLEDDPGCLADYVEIY 68

Query: 55 DGDSVHAPLLGVFSG 69
          D        +G + G
Sbjct: 69 DSYDDVHGFVGRYCG 83

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 61.4 bits (149), Expect = 4e-13
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
          P  Y  +V+ SW I+        I L+F     E    C +D + I  GD+    L G  
Sbjct: 14 PQAYPSEVEKSWDIEVP--EGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQR 71

Query: 68 SG 69
          S 
Sbjct: 72 SS 73

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1 Length = 114

 Score = 60.4 bits (147), Expect = 5e-13
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 1  LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVH 60
          L ++SG+I      Y     C W I     P   +R+        C  + L I DG    
Sbjct: 14 LKEESGVIAT---YYGPKTNCVWTIQMP--PEYHVRVSIQYLQLNCNKESLEIIDGLP-G 67

Query: 61 APLLGVFSG 69
          +P+LG    
Sbjct: 68 SPVLGKICE 76

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)

Query: 1   LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIF 54
           L+  SG  I  + P  Y    +C W + +S    +   L F  F  E    C  D+L ++
Sbjct: 238 LTTSSGTFISPNYPMPYYHSSECYWWLKSS--HGSAFELEFKDFHLEHHPNCTLDYLAVY 295

Query: 55  DGDSVHAPLLGVFSG 69
           DG S ++ LL    G
Sbjct: 296 DGPSSNSHLLTQLCG 310

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 57.6 bits (139), Expect = 6e-11
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 10/75 (13%)

Query: 1  LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIF 54
          L++ +G I     P  Y   + C+W I     PN  I L F +F  E    C  D+L ++
Sbjct: 5  LTESTGTIQSPGHPNVYPHGINCTWHILV--QPNHLIHLMFETFHLEFHYNCTNDYLEVY 62

Query: 55 DGDSVHAPLLGVFSG 69
          D DS     LG + G
Sbjct: 63 DTDS--ETSLGRYCG 75

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 12  PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE-----CGWDHLYIFDGDSVHAPLLGV 66
           P NY  + +C + I         I +HF +F+ E        D L I DG    +PLLG+
Sbjct: 134 PNNYPNNWECIYRITVR--TGQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGI 191

Query: 67  FSG 69
           F G
Sbjct: 192 FYG 194

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens} Length = 457

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 12  PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLG 65
           P  YS +  C+W I A  T   T+   F +F  E    C  D+L ++DG        G
Sbjct: 366 PNPYSENQHCNWTIRA--TTGNTVNYTFLAFDLEHHINCSTDYLELYDGPRQMGRYCG 421

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 60.0 bits (145), Expect = 2e-12
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
          PG Y+ D +  W + A   P   +RL+F  F  E    C +D + +  G  V A L G  
Sbjct: 21 PGEYANDQERRWTLTAP--PGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQE 78

Query: 68 SG 69
          S 
Sbjct: 79 ST 80

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 61.1 bits (148), Expect = 5e-12
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSF----ATECGWDHLYIFDGDSVHAPLLGVF 67
          P +Y     C W++ A + PN  I L+FN        +C +D + I DGDS  A LLG  
Sbjct: 24 PQDYPSHQNCEWIVYAPE-PNQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKH 82

Query: 68 SG 69
           G
Sbjct: 83 CG 84

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A Length = 579

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 14/81 (17%)

Query: 1   LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGW 48
            +  +G I     P  Y  ++ C++ I A   P   I L F  F  E          C +
Sbjct: 131 FTSPNGTIESPGFPEKYPHNLDCTFTILAK--PKMEIILQFLIFDLEHDPLQVGEGDCKY 188

Query: 49  DHLYIFDGDSVHAPLLGVFSG 69
           D L I+DG     PL+G + G
Sbjct: 189 DWLDIWDGIPHVGPLIGKYCG 209

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 60.4 bits (146), Expect = 5e-12
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
          P  Y      SW + A   P   +RL+F  F  E    C +D + +  G  V A L G  
Sbjct: 17 PEKYGNHQDRSWTLTAP--PGFRLRLYFTHFNLELSYRCEYDFVKLTSGTKVLATLCGQE 74

Query: 68 SG 69
          S 
Sbjct: 75 ST 76

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1 Length = 286

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 1   LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHF-NSFATE------CGWDHL 51
            + +SG +   + P  Y     C++ I        +I L F  SF  E      C +D L
Sbjct: 170 FTGRSGFLSSPEYPQPYPKLSSCAYNIRL--EEGFSITLDFVESFDVEMHPEAQCPYDSL 227

Query: 52  YIFDGDSVHAPLLG 65
            I      + P  G
Sbjct: 228 KIQTDKREYGPFCG 241

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 116

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 1  LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDS 58
          + D SG I   D   N      C+W I     P+  +R+        CG +++ +FDG  
Sbjct: 13 IKDTSGSISNTDRQKNL-----CTWTILMK--PDQKVRMAIPYLNLACGKEYVEVFDGLL 65

Query: 59 VHAPLLGVFSG 69
             P  G    
Sbjct: 66 -SGPSYGKLCA 75

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1 Length = 450

 Score = 58.5 bits (141), Expect = 3e-11
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 14/88 (15%)

Query: 1   LSDKSGII--IDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGW 48
            +  SG+I     P  Y   ++C++++ A     + I L F SF  E          C +
Sbjct: 15  YTTPSGVIKSPGFPEKYPNSLECTYIVFA--PKMSEIILEFESFDLEPDSNPPGGMFCRY 72

Query: 49  DHLYIFDGDSVHAPLLGVFSGLMYEGDY 76
           D L I+DG     P +G + G    G  
Sbjct: 73  DRLEIWDGFPDVGPHIGRYCGQKTPGRI 100

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 57.6 bits (139), Expect = 5e-11
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
          P +Y  D + +W I         I+L+F  F  E    C +D++ +   D V A   G  
Sbjct: 18 PDSYPSDSEVTWNITVP--DGFRIKLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRE 75

Query: 68 SG 69
          + 
Sbjct: 76 TT 77

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens} Length = 278

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 15/78 (19%)

Query: 1   LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSF-------ATECGWDHL 51
            + ++G+I   D P  Y    +C + I+        + L F             C +D++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIEL--EEGFMVNLQFEDIFDIEDHPEVPCPYDYI 228

Query: 52  YIFDGDSVHAPLLGVFSG 69
            I  G      +LG F G
Sbjct: 229 KIKVGP----KVLGPFCG 242

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens} Length = 460

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHA 61
          P  Y  ++ C++ I A   P   I L F  F  E          C +D L I+DG     
Sbjct: 25 PEKYPHNLDCTFTILA--KPKMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVG 82

Query: 62 PLLGVFSG 69
          PL+G + G
Sbjct: 83 PLIGKYCG 90

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1 Length = 109

 Score = 52.4 bits (126), Expect = 5e-10
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 1  LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDS 58
          L+D  G I    GP        C W +     P   + +   +    CG +++ + +G +
Sbjct: 10 LTDDYGTIFTYKGPKTE-----CVWTLQVD--PKYKLLVSIPTLNLTCGKEYVEVLEG-A 61

Query: 59 VHAPLLGVFSG 69
            +  LG F  
Sbjct: 62 PGSKSLGKFCE 72

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 54.6 bits (131), Expect = 6e-10
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVF 67
          P +Y  D + +W I         I+L+F  F  E    C +D++ +   D V A   G  
Sbjct: 18 PDSYPSDSEVTWNITV--PDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRE 75

Query: 68 SG 69
          + 
Sbjct: 76 TT 77

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens} Length = 361

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 1   LSDKSGIII--DGPGNYSIDVKCSWLIDASDTPNATIRLHFNSF-------ATECGWDHL 51
            + ++G+I   D P  Y    +C + I+        + L F             C +D++
Sbjct: 171 FTQRTGVITSPDFPNPYPKSSECLYTIELE--EGFMVNLQFEDIFDIEDHPEVPCPYDYI 228

Query: 52  YIFDGDSVHAPLLG 65
            I  G  V  P  G
Sbjct: 229 KIKVGPKVLGPFCG 242

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A Length = 115

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 13/65 (20%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHF-NSFATE------CGWDHLYIFDGDSVHAPLL 64
          P  Y    +CS+ ID        + L F + F  E      C +D++ I  G      + 
Sbjct: 22 PNPYPKSSECSYTIDL--EEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGS----KVW 75

Query: 65 GVFSG 69
          G F G
Sbjct: 76 GPFCG 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	99.96
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	99.95
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	99.95
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	99.95
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	99.95
1nzi_A	159	Complement C1S component; calcium, innate immunity	99.94
1szb_A	170	Mannose binding lectin-associated serine protease-	99.93
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.91
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.91
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	99.91
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.91
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.91
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	99.9
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.9
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	99.9
3dem_A	278	Complement factor MAsp-3; complement system, innat	99.9
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.89
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.89
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	99.88
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.88
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	99.87

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=99.96  E-value=5.3e-28  Score=166.56  Aligned_cols=108  Identities=21%  Similarity=0.207  Sum_probs=97.7

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCC
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG   74 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~   74 (137)
                      |++.+|.|+|  ||..||++.+|.|+|+++.  +++|+|+|.+|+||    |.+|||+||||....++++++|||...|.
T Consensus        11 l~~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~--g~~I~L~F~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~CG~~~p~   88 (149)
T 2wno_A           11 FTDPKQIFKSPGFPNEYEDNQICYWHIRLKY--GQRIHLSFLDFDLEDDPGCLADYVEIYDSYDDVHGFVGRYCGDELPD   88 (149)
T ss_dssp             ECSSEEEEECTTTTSCCCTTCEEEEEEECCT--TCEEEEEEEEEECCCCTTCCSSEEEEESSSSSSSSEEEEECSSSCCC
T ss_pred             EECCceEEECCCCCcCCCCCCEEEEEEEECC--CCEEEEEEEEEEecCCCCCCCCEEEEecCCCCCcceeeeEcCCCCCC
Confidence            4567899996  9999999999999999998  99999999999997    88999999999887788999999999898


Q ss_pred             CeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeeeeee
Q psy3691          75 DYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLW  110 (137)
Q Consensus        75 ~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~~~~  110 (137)
                      .+.+.++.++|.|.+|.....+||++.|.......+
T Consensus        89 ~~~S~~n~l~v~F~Sd~~~~~~GF~a~y~~~~~~~~  124 (149)
T 2wno_A           89 DIISTGNVMTLKFLSDASVTAGGFQIKYVAMDPVSK  124 (149)
T ss_dssp             CEECSSSEEEEEEECCSSCCCCEEEEEEEEECC---
T ss_pred             CEEEeCCEEEEEEEECCCCCCCCEEEEEEEECCCcc
Confidence            999999999999999999999999999998765544

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.95  E-value=1e-27  Score=157.07  Aligned_cols=96  Identities=14%  Similarity=0.218  Sum_probs=87.5

Q ss_pred             CCCcEEEEeCCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEEeCC
Q psy3691           2 SDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRV   81 (137)
Q Consensus         2 t~~~G~i~syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s~~~   81 (137)
                      ++.+|.|+| |  ||++.+|.|+|+++.  |++|+|+|.+|+++|.+|||+||||... ++++++|||.. |..+.+ ++
T Consensus        11 ~~~~G~i~S-P--Yp~~~~C~w~I~~~~--g~~I~l~f~~f~l~C~~D~l~I~dg~~~-~~~~~~~CG~~-p~~~~S-~n   82 (109)
T 1spp_A           11 TDDYGTIFT-Y--KGPKTECVWTLQVDP--KYKLLVSIPTLNLTCGKEYVEVLEGAPG-SKSLGKFCEGL-SILNRG-SS   82 (109)
T ss_dssp             ECSEEEEEC-C--CSSCSEEEEEEECCT--TSEEEEEEEEEECCTTTEEEEEESSSTT-SCEEEEESEEE-EEEEEE-CT
T ss_pred             eCCcEEEeC-C--CCCCCcEEEEEEcCC--CCEEEEEEeeeeccCCCCEEEEEeCCCC-CchhhhhhCCC-CCCEEE-CC
Confidence            456788887 4  999999999999998  9999999999999999999999999865 77899999986 667888 99


Q ss_pred             eEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          82 PDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        82 ~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      .++|.|.+|....++||++.|...
T Consensus        83 ~l~v~F~Sd~~~~~~GF~~~y~~~  106 (109)
T 1spp_A           83 GMTVKYKRDSGHPASPYEIIFLRD  106 (109)
T ss_dssp             TCEEEEEECTTCCCCCCEEEEEEE
T ss_pred             EEEEEEEeCCCCCCCCEEEEEEEe
Confidence            999999999999999999999865

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=99.95  E-value=2.3e-27  Score=156.91  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=89.3

Q ss_pred             CCCCcEEEEeCCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEEeC
Q psy3691           1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHR   80 (137)
Q Consensus         1 lt~~~G~i~syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s~~   80 (137)
                      |++.+|.|+| |  ||++.+|.|+|+++.  |++|+|+|.+|+|+|.+|||+||||... ++++++|||.. |..+.+.+
T Consensus        13 l~~~~G~i~S-P--Yp~~~~C~w~I~~~~--g~~I~l~f~~f~l~C~~D~l~i~dg~~~-~~~~~~~CG~~-p~~~~S~~   85 (116)
T 1spp_B           13 IKDTSGSISN-T--DRQKNLCTWTILMKP--DQKVRMAIPYLNLACGKEYVEVFDGLLS-GPSYGKLCAGA-AIVFLSTA   85 (116)
T ss_dssp             ECCSEEEEEC-C--SSCCSEEEEEEECCT--TCEEEEEEEEEECCBTTEEEEEESSSTT-SCEEEEESEEE-EEEEECSS
T ss_pred             EeCCceEEeC-C--CcCCCCEEEEEEeCC--CCEEEEEEeeCcccCCCCEEEEEcCCCC-CcccccccCcC-CCCEEecC
Confidence            3566788886 4  899999999999998  9999999999999999999999999876 78899999987 77788889


Q ss_pred             CeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          81 VPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        81 ~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      +.++|.|.+|....++||++.|...
T Consensus        86 n~l~v~F~Sd~~~~~~GF~~~y~~~  110 (116)
T 1spp_B           86 NTMTIKYNRISGNSSSPFLIYFYGS  110 (116)
T ss_dssp             SEEEEEEEESSCSCCCCCEEEEEEE
T ss_pred             CEEEEEEEECCCCCCCCEEEEEEEe
Confidence            9999999999999999999999865

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=99.95  E-value=3.2e-27  Score=155.70  Aligned_cols=98  Identities=21%  Similarity=0.321  Sum_probs=88.9

Q ss_pred             CCCCcEEEEeCCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEEeC
Q psy3691           1 LSDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHR   80 (137)
Q Consensus         1 lt~~~G~i~syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s~~   80 (137)
                      |++.+|.|+| |  ||++.+|.|.|+++.  |++|+|+|.+|+++|.+|||+||||... ++++++|||.. |..+.+.+
T Consensus        14 l~~~~G~i~S-p--y~~~~~C~w~I~~~~--g~~I~l~f~~f~l~C~~D~l~i~dg~~~-~~~~~~~CG~~-p~~~~S~~   86 (114)
T 1sfp_A           14 LKEESGVIAT-Y--YGPKTNCVWTIQMPP--EYHVRVSIQYLQLNCNKESLEIIDGLPG-SPVLGKICEGS-LMDYRSSG   86 (114)
T ss_dssp             ECCSEEEEEC-C--CSSCSEEEEEEECCT--TCEEEEEEEEEECCTTTEEEEEESSSTT-SCEEEEESEEE-EEEEECSS
T ss_pred             EECCcEEEeC-C--CcCCCCEEEEEEeCC--CCEEEEEEeeeeeecCCCEEEEEcCCCC-CcceeEecCcC-CCCEEecC
Confidence            3567788887 3  889999999999998  9999999999999999999999999874 77899999988 77788889


Q ss_pred             CeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          81 VPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        81 ~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      +.+.|.|.+|....++||++.|...
T Consensus        87 n~l~v~F~Sd~~~~~~GF~~~y~~~  111 (114)
T 1sfp_A           87 SIMTVKYIREPEHPASFYEVLYFQD  111 (114)
T ss_dssp             SEEEEEEEECTTSCCCCCEEEEEEE
T ss_pred             CeEEEEEEECCCCCCCCEEEEEEEE
Confidence            9999999999999999999999865

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=99.95  E-value=5.1e-27  Score=154.70  Aligned_cols=97  Identities=25%  Similarity=0.399  Sum_probs=89.7

Q ss_pred             CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691           2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY   72 (137)
Q Consensus         2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~   72 (137)
                      ++.+|.|+|  ||..||++.+|.|.|+++.  |++|+|+|. .|+||      |.+|||+|+||.    ..++++||...
T Consensus        10 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~i~l~f~d~f~le~~~~~~C~~D~l~i~dg~----~~~~~~CG~~~   83 (115)
T 3poj_A           10 TQRTGTITSPDYPNPYPKSSECSYTIDLEE--GFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGS----KVWGPFCGEKS   83 (115)
T ss_dssp             CSSEEEEECTTTTSCCCTTCEEEEEEECCT--TCCCEEEECSCCBBCCCSSSSSCSCEEEEEETT----EEEEEECBSSC
T ss_pred             cCCCEEEcCCCCCcCCcCCCeEEEEEEcCC--CCEEEEEEecceecccCCCCCCCCeEEEEEcCC----cccccCcCCCC
Confidence            678899996  9999999999999999998  999999999 59986      779999999994    57899999998


Q ss_pred             CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEe
Q psy3691          73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGN  104 (137)
Q Consensus        73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~  104 (137)
                      |..+.+.++.++|.|.+|....++||++.|++
T Consensus        84 p~~~~s~~~~l~i~F~Sd~~~~~~GF~~~y~a  115 (115)
T 3poj_A           84 PEPISTQSHSIQILFRSDNSGENRGWRLSYRA  115 (115)
T ss_dssp             CCCEECCCSEEEEEEECCSSCCCCBCEEEEEC
T ss_pred             CCCEEecCCEEEEEEEcCCCCCCCCEEEEEEC
Confidence            88899999999999999999999999999974

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.94  E-value=4.5e-26  Score=157.72  Aligned_cols=105  Identities=21%  Similarity=0.295  Sum_probs=91.1

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccC-
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYE-   73 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p-   73 (137)
                      |++.+|.|+|  ||..||++.+|.|+|+++.  |++|+|+|.+|+||    |.+|||+||||.    ..++++||...| 
T Consensus         1 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~~   74 (159)
T 1nzi_A            1 EPTMYGEILSPNYPQAYPSEVEKSWDIEVPE--GYGIHLYFTHLDIELSENCAYDSVQIISGD----TEEGRLCGQRSSN   74 (159)
T ss_dssp             CCCSEEEEECTTTTSCCCSSEEEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEEC-------CCEEECSEECCC
T ss_pred             CCCCCEEEECCCCccCCCCCCCEEEEEEeCC--CCEEEEEEeEEEecCCCCCCCCEEEEEeCC----chhcccCCCCCCC
Confidence            6789999996  9999999999999999998  99999999999997    889999999985    478999998764 


Q ss_pred             -------CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeeeee
Q psy3691          74 -------GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQLWE  111 (137)
Q Consensus        74 -------~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~~~  111 (137)
                             ..+.+.++.++|.|.+|....+  +||++.|....+++|.
T Consensus        75 ~~~~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~~y~~~d~~eC~  121 (159)
T 1nzi_A           75 NPHSPIVEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDINECT  121 (159)
T ss_dssp             CSSCCCSEEEEESSSEEEEEEEECSCCTTCCCEEEEEEEEEECCTTT
T ss_pred             cccCCcceeEEecCCeEEEEEEecCccCcccccceeeeecccCcccC
Confidence                   2578889999999999988775  9999999987766553

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=99.93  E-value=2.7e-25  Score=155.64  Aligned_cols=105  Identities=19%  Similarity=0.298  Sum_probs=94.2

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCc---
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLM---   71 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~---   71 (137)
                      |++.+|.|+|  ||..||++.+|.|+|+++.  |++|+|+|.+|+||    |.+|||+||||.    ..+++|||..   
T Consensus         8 l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~f~le~~~~C~~D~l~i~dg~----~~~~~~CG~~~~~   81 (170)
T 1szb_A            8 PEPVFGRLASPGFPGEYANDQERRWTLTAPP--GYRLRLYFTHFDLELSHLCEYDFVKLSSGA----KVLATLCGQESTD   81 (170)
T ss_dssp             CCCCEEEEECTTTTSCCCSSCEEEEEEECCT--TEEEEEEEEEEECCCCTTSCSSEEEEESSS----SEEEEECSBTTTT
T ss_pred             EcCCCeEEECCCCCcCCcCCCcEEEEEEcCC--CCEEEEEEEEEEccCCCCCCCCEEEEEeCC----ccccccCCCCCCc
Confidence            5788999996  9999999999999999998  99999999999997    889999999984    5789999987   


Q ss_pred             ---cC--CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeeeee
Q psy3691          72 ---YE--GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQLWE  111 (137)
Q Consensus        72 ---~p--~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~~~  111 (137)
                         .|  ..+.+.++.++|.|.+|....+  .||++.|....+.++.
T Consensus        82 ~~~~P~~~~~~S~~n~l~v~F~Sd~~~~~~~~Gf~~~~~~~di~eC~  128 (170)
T 1szb_A           82 TERAPGKDTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAEDIDECQ  128 (170)
T ss_dssp             CSSSCTTCCEECSSSEEEEEEECCSCCSSCCCEEEEEEEEEECCTTC
T ss_pred             cccCCCCceEEeeCCeEEEEEeccccccCcCcCceeeeeccccCccc
Confidence               46  6788999999999999988876  9999999987776654

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=3.6e-24  Score=160.03  Aligned_cols=98  Identities=23%  Similarity=0.407  Sum_probs=90.8

Q ss_pred             CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCe-EEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691           2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNS-FATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY   72 (137)
Q Consensus         2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~-f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~   72 (137)
                      ++.+|.|+|  ||..||++.+|.|+|+++.  |++|.|+|.+ |+||      |.+|||+||||.    ..+++|||...
T Consensus       172 ~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~--g~~i~l~f~~~f~le~~~~~~C~~D~l~i~dg~----~~~~~~CG~~~  245 (278)
T 3dem_A          172 TQRTGVITSPDFPNPYPKSSECLYTIELEE--GFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP----KVLGPFCGEKA  245 (278)
T ss_dssp             CSSEEEEESTTTTSCCCSSCEEEEEEECCT--TCCEEEEECSCCBBCCCSSSSSSSCEEEEEETT----EEEEEECBSSC
T ss_pred             cCCccceeCCCCCCCCCCcCeEEEEEEeCC--CcEEEEEEccccccccCCCCCCCCCEEEEecCC----cccccccCCCC
Confidence            567899996  9999999999999999998  9999999997 9986      889999999994    46899999999


Q ss_pred             CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      |..+.++++.++|.|.+|....++||+|+|+++
T Consensus       246 p~~~~s~~~~l~v~F~sd~~~~~~GF~~~y~~~  278 (278)
T 3dem_A          246 PEPISTQSHSVLILFHSDNSGENRGWRLSYRAA  278 (278)
T ss_dssp             CCCEECSCSEEEEEEECCSSCCCCBCEEEEEEC
T ss_pred             CCCEEEcCCEEEEEEEECCCCCcCCEEEEEEEC
Confidence            988999999999999999999999999999863

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=168.35  Aligned_cols=104  Identities=23%  Similarity=0.344  Sum_probs=96.4

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEee
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFS   68 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~c   68 (137)
                      |++.+|.|+|  ||..||++.+|.|.|+++.  |++|.|+|.+|+||          |.+|||+||||....++++++||
T Consensus        12 l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~L~F~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~C   89 (460)
T 2qqo_A           12 FTSPNGTIESPGFPEKYPHNLDCTFTILAKP--KMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYC   89 (460)
T ss_dssp             ECSSEEEEECTTTTSCCCSSCEEEEEEECCT--TCEEEEEEEEEECCCC--------CCSSEEEEESSSTTTSCEEEEEC
T ss_pred             EeCCceEEeCCCCCCCCCCCCEEEEEEEcCC--CCEEEEEEEEEEcccccccccCCCCCCCEEEEEcCCCCCCcccceEe
Confidence            3567899996  9999999999999999998  99999999999985          77999999999888788999999


Q ss_pred             CCccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeee
Q psy3691          69 GLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDF  106 (137)
Q Consensus        69 G~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~  106 (137)
                      |...|..+.++++.+.|.|.+|.....+||++.|....
T Consensus        90 G~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~~  127 (460)
T 2qqo_A           90 GTKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLVH  127 (460)
T ss_dssp             TTCCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEEEC
T ss_pred             CCcCCcCEEeeCCEEEEEEeccceeecCcEEEEEEEEe
Confidence            99989899999999999999999999999999998764

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=99.91  E-value=3.7e-24  Score=169.76  Aligned_cols=104  Identities=24%  Similarity=0.386  Sum_probs=96.5

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEee
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFS   68 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~c   68 (137)
                      |+...|.|+|  ||+.||++.+|.|.|++|.  |++|+|+|.+|+||          |.+|||+||||....++++++||
T Consensus        15 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~f~le~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~C   92 (450)
T 2qqm_A           15 YTTPSGVIKSPGFPEKYPNSLECTYIVFAPK--MSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYC   92 (450)
T ss_dssp             ECSSEEEEECTTTTSCCCSSCEEEEEEECGG--GCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCEEEEEC
T ss_pred             EeCCcEEEeCCCCCcCCCCCCeEEEEEEeCC--CCEEEEEEEEEEeEeccCCCCCCCCCCcEEEEecCCCCCCccceeec
Confidence            3567899996  9999999999999999998  99999999999984          78999999999988889999999


Q ss_pred             CCccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeee
Q psy3691          69 GLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDF  106 (137)
Q Consensus        69 G~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~  106 (137)
                      |...|..+.++++.++|.|.+|.....+||++.|....
T Consensus        93 G~~~p~~i~S~~n~l~v~F~Sd~~~~~~GF~~~y~~~~  130 (450)
T 2qqm_A           93 GQKTPGRIRSSSGILSMVFYTDSAIAKEGFSANYSVLQ  130 (450)
T ss_dssp             TTCCCCEEEECSSEEEEEEECCSSCCCCEEEEEEEECC
T ss_pred             CCcCCCcEEEcCCEEEEEEEeCCccccCCeEEEEeccc
Confidence            99989899999999999999999999999999999763

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.91  E-value=3.6e-24  Score=174.47  Aligned_cols=107  Identities=23%  Similarity=0.387  Sum_probs=99.1

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEee
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFS   68 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~c   68 (137)
                      +++.+|.|+|  ||..||++.+|.|.|++|.  |++|.|+|.+|+||          |.+|||+||||....++++++||
T Consensus       133 ~~~~~G~i~SPnyP~~Yp~n~~C~W~I~~p~--g~~I~L~F~~F~lE~~~~~~~~~~C~~D~l~I~dG~~~~~~~lg~~C  210 (577)
T 4gz9_A          133 YTAPTGVIKSPGFPEKYPNSLECTYIIFAPK--MSEIILEFESFDLEQDSNPPGGMFCRYDRLEIWDGFPEVGPHIGRYC  210 (577)
T ss_dssp             ECSSEEEEECTTTTSCCCSSCEEEEEEECGG--GCCEEEEEEEEECCCCCSCSTTCCCCSSEEEEESSSTTTSCEEEEEC
T ss_pred             ecCCCccccCCCCCCCCCCCceEEEEEEECC--CCEEEEEEEEEEeeecCCCCCCCccCccEEEEEcCCCCCCceeEEEe
Confidence            3567899996  9999999999999999998  99999999999996          88999999999988889999999


Q ss_pred             CCccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeeeee
Q psy3691          69 GLMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQL  109 (137)
Q Consensus        69 G~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~~~  109 (137)
                      |...|..+.+.++.++|.|.+|.+..++||++.|+...-.+
T Consensus       211 G~~~P~~i~S~~n~l~i~F~SD~s~~~~GF~a~y~~v~~~~  251 (577)
T 4gz9_A          211 GQKTPGRIRSSSGVLSMVFYTDSAIAKEGFSANYSVLQSSI  251 (577)
T ss_dssp             SSSCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEECCCCC
T ss_pred             CCCCCCCcceeCCEEEEEEEECCCCCCceEEEEEEEEcccc
Confidence            99999999999999999999999999999999999865443

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.91  E-value=1.1e-23  Score=158.38  Aligned_cols=100  Identities=24%  Similarity=0.333  Sum_probs=89.7

Q ss_pred             CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691           2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY   72 (137)
Q Consensus         2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~   72 (137)
                      ++.+|.|+|  ||..||++.+|.|.|+++.  |++|+|+|. .|+||      |.+|||+|+||.    +++++|||...
T Consensus       171 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~f~~~f~le~~~~~~C~~D~l~i~dg~----~~~~~~CG~~~  244 (286)
T 1nt0_A          171 TGRSGFLSSPEYPQPYPKLSSCAYNIRLEE--GFSITLDFVESFDVEMHPEAQCPYDSLKIQTDK----REYGPFCGKTL  244 (286)
T ss_dssp             CSSSEEEECTTTTSCCCSSCEEEEEEECCS--SCEEEEEECSCCBBCCC----C--CEEEEECSS----CEEEEECBSSC
T ss_pred             cCCceEEeCCCCCCCCCCCCEEEEEEECCC--ceEEEEEEeceEEeccCCCCCCCCcEEEEEeCC----cceEEEcCCCC
Confidence            567899996  9999999999999999998  999999996 79986      779999999983    67899999999


Q ss_pred             CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeee
Q psy3691          73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFV  107 (137)
Q Consensus        73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~  107 (137)
                      |..+.+.++.++|.|.+|....++||++.|.....
T Consensus       245 p~~~~S~~n~l~i~F~sd~~~~~~GF~~~y~~~~~  279 (286)
T 1nt0_A          245 PPRIETDSNKVTITFTTDESGNHTGWKIHYTSTAQ  279 (286)
T ss_dssp             CCCEECSSSEEEEEEECCSCCCCCBCEEEEEEEC-
T ss_pred             CCCEEeeCCEEEEEEEeCCCCCCCCEEEEEEEecC
Confidence            98999999999999999999999999999997653

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=99.90  E-value=2.2e-23  Score=169.79  Aligned_cols=101  Identities=27%  Similarity=0.431  Sum_probs=93.3

Q ss_pred             CcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee---eeceEEEEecCCCCCCceeEEeeCCccCCCeE
Q psy3691           4 KSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE---CGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYS   77 (137)
Q Consensus         4 ~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le---c~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~   77 (137)
                      .+|.|+|  ||..||++.+|.|+|++|+ ++.+|+|+|. .|++|   |.+|||+||||....++++++|||...|..+.
T Consensus        17 ~~G~i~SPnyP~~Yp~n~~C~W~I~~p~-~~~~I~L~F~~~f~le~~~C~~Dyl~I~dG~~~~~~~lg~~CG~~~p~~i~   95 (577)
T 4gz9_A           17 NPGYLTSPGYPHSYHPSEKCEWLIQAPE-PYQRIMINFNPHFDLEDRDCKYDYVEVIDGENEGGRLWGKFCGKIAPSPVV   95 (577)
T ss_dssp             SCEEEECTTTTTCCCSSCEEEEEEECSS-TTCCEEEEECSCCBCCCGGGTSSEEEEEESSSTTSEEEEEECSSSCCCCEE
T ss_pred             CCEEEeCCCCCCCCCCCCeEEEEEEECC-CCcEEEEEEEeeeeecCCCCCccEEEEEeCCCCCCcEEEEecCCCCCCCEE
Confidence            4699996  9999999999999999997 3579999996 79986   99999999999998899999999999999999


Q ss_pred             EeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          78 IHRVPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        78 s~~~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      +.++.++|.|.+|....++||++.|+..
T Consensus        96 S~~n~l~v~F~SD~s~~~~GF~a~y~~~  123 (577)
T 4gz9_A           96 SSGPFLFIKFVSDYETHGAGFSIRYEIF  123 (577)
T ss_dssp             CSSSEEEEEEECCSSCCCCBCEEEEEEC
T ss_pred             EeCCeEEEEEEECCCCCCCCeEEEEEEe
Confidence            9999999999999999999999999864

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.90  E-value=3.1e-23  Score=164.55  Aligned_cols=102  Identities=23%  Similarity=0.340  Sum_probs=96.1

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCC
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG   74 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~   74 (137)
                      +++.+|.|+|  ||..||++.+|.|.|+++.  +++|+|+|.+|++|    |.+|||+||||....+++++++||...|.
T Consensus       238 ~~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--~~~i~l~f~~f~le~~~~C~~D~l~i~dg~~~~~~~l~~~CG~~~p~  315 (457)
T 3kq4_B          238 LTTSSGTFISPNYPMPYYHSSECYWWLKSSH--GSAFELEFKDFHLEHHPNCTLDYLAVYDGPSSNSHLLTQLCGDEKPP  315 (457)
T ss_dssp             CCSSEEEEECTTTTSCCCSSCEEEEEECCST--TCCEEEEEEECCCCCCTTCCSSEEEEEESSSTTSEEEEEECSSCCCC
T ss_pred             EccCcceeccCCCCCCCCCCCEEEEEEEeCC--CCEEEEEEEeeeecCCCCcCCCEEEEEeCCCCCchhhhhhcCCcCCC
Confidence            4567899996  9999999999999999998  99999999999996    89999999999988889999999999998


Q ss_pred             CeEEeCCeEEEEEEcCCCcCCCCeEEEEEe
Q psy3691          75 DYSIHRVPDVKCFTITNELGNTGIQIVLGN  104 (137)
Q Consensus        75 ~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~  104 (137)
                      .+.++++.++|.|.+|....++||++.|..
T Consensus       316 ~i~S~~n~l~v~f~sd~~~~~~GF~a~y~~  345 (457)
T 3kq4_B          316 LIRSSGDSMFIKLRTDEGQQGRGFKAEYRQ  345 (457)
T ss_dssp             CEECSSSCEEEEEECCSSCCCCCCEEEEEE
T ss_pred             CEEecCCEEEEEEEeCCcccCCeEEEEEEe
Confidence            999999999999999999999999999986

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=99.90  E-value=2.5e-23  Score=156.29  Aligned_cols=103  Identities=19%  Similarity=0.285  Sum_probs=88.4

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCc---
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLM---   71 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~---   71 (137)
                      |++.+|.|+|  ||..||++.+|.|+|+++.  |++|+|+|..|+||    |.+|||+||||.    ..++++||..   
T Consensus         4 l~~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~--g~~I~L~F~~f~le~~~~C~~D~l~I~dg~----~~~~~~CG~~~~~   77 (286)
T 1nt0_A            4 PEPVFGRLVSPGFPEKYGNHQDRSWTLTAPP--GFRLRLYFTHFNLELSYRCEYDFVKLTSGT----KVLATLCGQESTD   77 (286)
T ss_dssp             -CCCEEEEECTTTTSCCCSSCCEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEEETT----EEEEEECSSSCCS
T ss_pred             ccCCCceEeCCCCCccCcCCCcEEEEEEcCC--CCEEEEEEEEEEecCCCCCCCcEEEEECCC----eEeceECCCcCCC
Confidence            5788999996  9999999999999999998  99999999999997    889999999984    5789999986   


Q ss_pred             ---cC--CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeee
Q psy3691          72 ---YE--GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQL  109 (137)
Q Consensus        72 ---~p--~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~  109 (137)
                         .|  ..+.+.++.++|.|.+|.....  +||++.|......+
T Consensus        78 ~~~~P~~~~~~S~~n~l~v~F~Sd~s~~~~~~GF~a~y~~~~~~~  122 (286)
T 1nt0_A           78 TERAPGNDTFYSLGPSLKVTFHSDYSNEKPFTGFEAFYAAEDVDE  122 (286)
T ss_dssp             SCBCCTTCEEECSSSEEEEEEECCC----CCCEEEEEEEEEECCT
T ss_pred             cccCCCCceEEeCCCEEEEEEEeCCcCCcCcccEEEEEEeccCCc
Confidence               46  5688889999999999988775  99999999875443

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=99.90  E-value=5e-23  Score=153.80  Aligned_cols=103  Identities=23%  Similarity=0.252  Sum_probs=89.4

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccC-
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYE-   73 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p-   73 (137)
                      |++.+|.|+|  ||..||++.+|.|+|+++.  |++|+|+|.+|+||    |.+|||+||||.    ..++++||...| 
T Consensus         5 lt~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~L~F~~f~le~~~~C~~D~l~v~dg~----~~~~~~CG~~~~~   78 (278)
T 3dem_A            5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPD--GFRIKLYFMHFNLESSYLCEYDYVKVETED----QVLATFCGRETTD   78 (278)
T ss_dssp             --CCEEEEECTTTTSCCCSSEEEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEECSS----CEEEEECSBSSSS
T ss_pred             eccCCceEeCCCCCCCCcCCCcEEEEEEECC--CCEEEEEEEEEEeCCCCCCCCcEEEEecCC----cccceEcCCcCCC
Confidence            5788999996  9999999999999999998  99999999999997    889999999984    468999998643 


Q ss_pred             -------CCeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeeeee
Q psy3691          74 -------GDYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFVQL  109 (137)
Q Consensus        74 -------~~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~~~  109 (137)
                             ..+.++++.+.|.|.+|.....  .||++.|.......
T Consensus        79 ~~~~~~~~~~~S~~n~l~v~F~Sd~~~~~~~~GF~~~y~~~~~~~  123 (278)
T 3dem_A           79 TEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDE  123 (278)
T ss_dssp             SSCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEEEEEEEECCT
T ss_pred             cccCCCCccEEecCCeEEEEEecCcccccccceeEEEEEEecccc
Confidence                   5688889999999999987764  79999999865543

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.89  E-value=4.6e-23  Score=159.06  Aligned_cols=102  Identities=23%  Similarity=0.254  Sum_probs=88.1

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccC-
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYE-   73 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p-   73 (137)
                      |++..|+|+|  ||+.||++++|.|+|+++.  |++|+|+|.+|+||    |.+|||+|+||.    ..++++||...+ 
T Consensus         5 lt~~~G~i~SP~yP~~Yp~n~~C~W~I~~~~--g~~I~l~F~~f~lE~~~~C~~D~l~i~dg~----~~~~~~cG~~~~~   78 (361)
T 4aqb_A            5 LNNMFGQIQSPGYPDSYPSDSEVTWNITVPD--GFRIKLYFMHFNLESSYLCEYDYVKVETED----QVLATFCGRETTD   78 (361)
T ss_dssp             EESSEEEEECTTTTSCCCSSEEEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEECSS----CEEEEECSBSSSS
T ss_pred             EeCCeEEEeCCCCCCCCCCCCeEEEEEEECC--CCEEEEEEeEEEecCCCCCCceEEEEccCC----cccceeeccccCC
Confidence            5789999996  9999999999999999998  99999999999997    889999999984    456788886433 


Q ss_pred             -------CCeEEeCCeEEEEEEcCCCcCCC--CeEEEEEeeeee
Q psy3691          74 -------GDYSIHRVPDVKCFTITNELGNT--GIQIVLGNDFVQ  108 (137)
Q Consensus        74 -------~~~~s~~~~~~v~f~sd~~~~~~--GF~~~y~~~~~~  108 (137)
                             ..+.+.++.++|.|.+|.+..++  ||+++|.+....
T Consensus        79 ~~~~~~~~~~~S~~n~l~v~F~SD~s~~~~~~GF~a~y~~~~~~  122 (361)
T 4aqb_A           79 TEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVD  122 (361)
T ss_dssp             SSCCCTTCCEECSSSEEEEEEEECSCCCSCCCEEEEEEEEEECC
T ss_pred             CccCCCccceeccCCEeEEEEEeCCcccccccccccceeecccc
Confidence                   24788899999999999887764  999999876544

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.89  E-value=9.5e-23  Score=165.98  Aligned_cols=101  Identities=30%  Similarity=0.444  Sum_probs=91.0

Q ss_pred             CcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee---eeceEEEEecCCCCCCceeEEeeCCccCCCeE
Q psy3691           4 KSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE---CGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYS   77 (137)
Q Consensus         4 ~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le---c~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~   77 (137)
                      .+|.|+|  ||..||++.+|.|+|++|+ ++++|.|+|. .|++|   |.+|||+||||....++++++|||...|..+.
T Consensus        14 ~~G~i~SP~yP~~Yp~~~~C~w~I~~p~-~~~~I~l~F~~~f~le~~~C~~D~l~i~dg~~~~~~~l~~~CG~~~p~~i~   92 (579)
T 2qqk_A           14 DAGYITSPGYPQDYPSHQNCEWIVYAPE-PNQKIVLNFNPHFEIEKHDCKYDFIEIRDGDSESADLLGKHCGNIAPPTII   92 (579)
T ss_dssp             SCEEEECTTTTSCCCSSCCEEEEEECSS-TTSEEEEEECSCCBCCCTTSSSSEEEEEESSSTTSEEEEEECTTSCCCCEE
T ss_pred             CCeEEeCCCCCCCCcCCCEEEEEEEECC-CCcEEEEEEecccccccCCCCeeEEEEEeCCCCCcceeeeECCCCCCCCEE
Confidence            5799996  9999999999999999996 3689999999 89997   89999999999988889999999999998999


Q ss_pred             EeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          78 IHRVPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        78 s~~~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      ++++.+.|.|.+|....++||++.|+..
T Consensus        93 S~~n~l~v~F~Sd~~~~~~GF~~~y~~~  120 (579)
T 2qqk_A           93 SSGSMLYIKFTSDYARQGAGFSLRYEIF  120 (579)
T ss_dssp             CSSSEEEEEEECC---CCCBCEEEEEEE
T ss_pred             ecCCEEEEEEEECCCCCCCceEEEEEEc
Confidence            9999999999999999999999999865

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=99.88  E-value=2.9e-22  Score=163.11  Aligned_cols=103  Identities=23%  Similarity=0.341  Sum_probs=93.8

Q ss_pred             CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEeeC
Q psy3691           2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFSG   69 (137)
Q Consensus         2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~cG   69 (137)
                      ++.+|.|+|  ||..||++.+|.|+|+++.  +++|.|+|..|+||          |.+|||+||||....++++++|||
T Consensus       132 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~I~l~F~~f~le~~~~~~~~~~C~~D~l~I~dg~~~~~~~~~~~CG  209 (579)
T 2qqk_A          132 TSPNGTIESPGFPEKYPHNLDCTFTILAKP--KMEIILQFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPLIGKYCG  209 (579)
T ss_dssp             CCSEEEEECTTTTSCCCSSCEEEEEEECCT--TEEEEEEEEEEEC-------------CCEEEEESSSTTTSCEEEEECS
T ss_pred             ccCCceecCCCCcccCCCCCeEEEEEEcCC--CCEEEEEEEEEEeecccccccCCCCCCEEEEEEeCCCCCCceeEEeCC
Confidence            567899996  9999999999999999998  99999999999985          789999999998888889999999


Q ss_pred             CccCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeee
Q psy3691          70 LMYEGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDF  106 (137)
Q Consensus        70 ~~~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~  106 (137)
                      ...|..+.+.++.+.|.|.+|.....+||++.|....
T Consensus       210 ~~~p~~i~S~~n~l~i~F~sd~~~~~~GF~~~y~~~~  246 (579)
T 2qqk_A          210 TKTPSELRSSTGILSLTFHTDMAVAKDGFSARYYLVH  246 (579)
T ss_dssp             SSCCCCEEECSSEEEEEEECCSSCCCCEEEEEEEEEE
T ss_pred             CCCCCcEEeeCCeEEEEEeccccccccceEEEEEEEe
Confidence            9999999999999999999999999999999999754

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.88  E-value=6.4e-22  Score=152.64  Aligned_cols=103  Identities=22%  Similarity=0.348  Sum_probs=92.8

Q ss_pred             CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCe-EEee------eeceEEEEecCCCCCCceeEEeeCCcc
Q psy3691           2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNS-FATE------CGWDHLYIFDGDSVHAPLLGVFSGLMY   72 (137)
Q Consensus         2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~-f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~~   72 (137)
                      ++.+|.|+|  ||..||++.+|.|.|+++.  |++|.|+|.+ |+++      |.+|||+|+||.    .++++|||...
T Consensus       172 ~~~~G~i~SP~yP~~Yp~~~~C~w~i~~~~--g~~i~l~f~~~~~~e~~~~~~C~~D~l~i~dg~----~~~~~~cG~~~  245 (361)
T 4aqb_A          172 TQRTGVITSPDFPNPYPKSSECLYTIELEE--GFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGP----KVLGPFCGEKA  245 (361)
T ss_dssp             CSSEEEEESTTTTSCCCSSCEEEEEEECCT--TCEEEEEECSCCBBCCCSSSSSSSSEEEEEETT----EEEEEECBSSC
T ss_pred             eCCCcEEecCCCCCCCCCCceeeEEeeecc--CcEEEEEEeecccccCCccCccCCCeEEEeeCC----eeEEeeCCCCC
Confidence            567899996  9999999999999999998  9999999987 5553      889999999983    57899999999


Q ss_pred             CCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEeeeeeee
Q psy3691          73 EGDYSIHRVPDVKCFTITNELGNTGIQIVLGNDFVQLW  110 (137)
Q Consensus        73 p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~~~~~~  110 (137)
                      |..+.+.++.++|.|.+|....++||+++|++....+.
T Consensus       246 p~~~~s~~n~~~i~F~SD~~~~~~GF~~~y~~~~~~C~  283 (361)
T 4aqb_A          246 PEPISTQSHSVLILFHSDNSGENRGWRLSYRAAGNECP  283 (361)
T ss_dssp             CCCEECSCSEEEEEEECCSCCCCCBCEEEEEEECCEEC
T ss_pred             CCCEeecCCeEEEEEEeCCCCCccceEEEEEEccCCCC
Confidence            99999999999999999999999999999998765554

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=99.87  E-value=3.6e-22  Score=158.39  Aligned_cols=102  Identities=25%  Similarity=0.330  Sum_probs=95.5

Q ss_pred             CCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee-----eeceEEEEecCCCCCCceeEEeeCCccCC
Q psy3691           2 SDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE-----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG   74 (137)
Q Consensus         2 t~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le-----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~   74 (137)
                      ++.+|.|+|  ||..||++.+|.|.|+++.  +++|.|+|.+|+||     |.+|||+|+||....+++++++||...|.
T Consensus       122 ~~~~G~i~SP~yP~~Yp~~~~C~w~I~~~~--g~~i~l~f~~f~le~~~~~C~~D~l~i~dg~~~~s~~~~~~cG~~~p~  199 (457)
T 3kq4_B          122 TDDLGTFTSPNFPNNYPNNWECIYRITVRT--GQLIAVHFTNFSLEEAIGNYYTDFLEIRDGGYEKSPLLGIFYGSNLPP  199 (457)
T ss_dssp             CSSCCCEECTTTTSCCCSSCEEEEEECCCS--SCCCEEEEEEEECCCCBTTBCSSEEEEESSSSTTSCEEEEECSSSCCC
T ss_pred             ecCcEEECCCCCCCcCCCCceEEEEEEeCC--CCEEEEEEEEEEeecCCCCcccceEEEecCCCCCcceeeeecCCCCCC
Confidence            567899996  9999999999999999998  99999999999994     88899999999988889999999999998


Q ss_pred             CeEEeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          75 DYSIHRVPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        75 ~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      .+.+.++.+++.|.+|....++||++.|...
T Consensus       200 ~~~S~~n~l~v~F~sd~~~~~~GF~~~y~~~  230 (457)
T 3kq4_B          200 TIISHSNKLWLKFKSDQIDTRSGFSAYWDGS  230 (457)
T ss_dssp             CEECSSSCEEEEEECCSSCCCCEEEEEEECC
T ss_pred             CeEEcCCEEEEEEEeCCCCCcCCEEEEeccc
Confidence            9999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1szba1	121	b.23.1.1 (A:3-123) Mannose-binding protein associa	5e-04
d1nzia1	117	b.23.1.1 (A:1-117) Complement C1S component {Human	5e-04

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWD--HLYIFDGDSVHAPLLGVFSG 69
          PG Y+ D +  W + A       +             +   + +  G  V A L G  S 
Sbjct: 19 PGEYANDQERRWTLTAPPGYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQEST 78

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 12 PGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGW--DHLYIFDGDSVHAPLLGVFSG 69
          P  Y  +V+ SW I+  +     +               D + I  GD+    L G  S 
Sbjct: 14 PQAYPSEVEKSWDIEVPEGYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSS 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d2qqma3	108	Mannose-binding protein associated serine protease	99.95
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	99.94
d1nt0a2	114	Mannose-binding protein associated serine protease	99.93
d1szba1	121	Mannose-binding protein associated serine protease	99.92
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	99.91
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	99.9
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	99.89

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.1e-28  Score=156.15  Aligned_cols=96  Identities=25%  Similarity=0.437  Sum_probs=90.4

Q ss_pred             EEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----------eeceEEEEecCCCCCCceeEEeeCCccC
Q psy3691           6 GIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----------CGWDHLYIFDGDSVHAPLLGVFSGLMYE   73 (137)
Q Consensus         6 G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----------c~~D~l~I~dg~~~~~~~l~~~cG~~~p   73 (137)
                      |.|+|  ||..||++.+|.|+|++|.  +++|+|+|.+|+|+          |.+|||+|+||.....+.++++||...|
T Consensus         1 G~i~SP~yP~~Y~~~~~C~w~I~~p~--~~~I~l~f~~f~l~~~~~~~~~~~C~~D~l~i~dg~~~~~~~~~~~Cg~~~p   78 (108)
T d2qqma3           1 GVIKSPGFPEKYPNSLECTYIVFAPK--MSEIILEFESFDLEPDSNPPGGMFCRYDRLEIWDGFPDVGPHIGRYCGQKTP   78 (108)
T ss_dssp             EEEECTTTTSCCCSSCEEEEEEECGG--GCCEEEEEEEEECCCC----CCCSSCSSEEEEESSSTTTSCEEEEECTTCCC
T ss_pred             CEEeCCCCCCCCCCCCeEEEEEEeCC--CceeeeEEEEEEeecccccccCCCccccEEEEEeccccCCccccEEeeccCC
Confidence            78996  9999999999999999998  99999999999984          7889999999998888899999999999


Q ss_pred             CCeEEeCCeEEEEEEcCCCcCCCCeEEEEE
Q psy3691          74 GDYSIHRVPDVKCFTITNELGNTGIQIVLG  103 (137)
Q Consensus        74 ~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~  103 (137)
                      ..+.+.++.++|.|.+|....++||++.|.
T Consensus        79 ~~~~S~~n~l~i~F~Sd~~~~~~GF~~~yt  108 (108)
T d2qqma3          79 GRIRSSSGILSMVFYTDSAIAKEGFSANYS  108 (108)
T ss_dssp             CEEEECSSEEEEEEECCSSCCCCEEEEEEE
T ss_pred             CCEEEcCCEEEEEEEECCCCCCCCEEEEEC
Confidence            889999999999999999999999999985

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.9e-26  Score=148.52  Aligned_cols=103  Identities=22%  Similarity=0.309  Sum_probs=87.2

Q ss_pred             CCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCccCC--
Q psy3691           3 DKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMYEG--   74 (137)
Q Consensus         3 ~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~p~--   74 (137)
                      +..|.|+|  ||+.||++.+|.|.|++|.  |++|.|+|.+|+||    |.+|||+|+||.......++++||...+.  
T Consensus         3 ~~~G~i~SP~yP~~Yp~~~~C~w~I~~p~--g~~I~l~f~~f~le~~~~C~~D~l~I~dg~~~~~~~~~~~~~~~~~~~~   80 (117)
T d1nzia1           3 TMYGEILSPNYPQAYPSEVEKSWDIEVPE--GYGIHLYFTHLDIELSENCAYDSVQIISGDTEEGRLCGQRSSNNPHSPI   80 (117)
T ss_dssp             CSEEEEECTTTTSCCCSSEEEEEEEECCT--TEEEEEEEEEEECCCCGGGCSSEEEEEC---CCEEECSEECCCCSSCCC
T ss_pred             CcEEEEeCCCCCCCCCCCCcEEEEEEcCC--CCcEEEEEEeeeEeeecccccceeEEecCCCCCCceeeeecCCCCCCcc
Confidence            35799996  9999999999999999998  99999999999996    88999999999988888899999987554  


Q ss_pred             --CeEEeCCeEEEEEEcCCCcCC--CCeEEEEEeeee
Q psy3691          75 --DYSIHRVPDVKCFTITNELGN--TGIQIVLGNDFV  107 (137)
Q Consensus        75 --~~~s~~~~~~v~f~sd~~~~~--~GF~~~y~~~~~  107 (137)
                        .+.+.++.++|.|.+|....+  +||+++|.+.++
T Consensus        81 ~~~~~s~~n~l~i~F~Sd~s~~~~~~GF~~~y~avDi  117 (117)
T d1nzia1          81 VEEFQVPYNKLQVIFKSDFSNEERFTGFAAYYVATDI  117 (117)
T ss_dssp             SEEEEESSSEEEEEEEECSCCTTCCCEEEEEEEEEEC
T ss_pred             cceEEEcCCEEEEEEEECCCCCCCCCCEEEEEEEEEC
Confidence              256788999999999866554  699999998653

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.2e-25  Score=146.42  Aligned_cols=99  Identities=24%  Similarity=0.356  Sum_probs=87.9

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeC-eEEee------eeceEEEEecCCCCCCceeEEeeCCc
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFN-SFATE------CGWDHLYIFDGDSVHAPLLGVFSGLM   71 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~-~f~le------c~~D~l~I~dg~~~~~~~l~~~cG~~   71 (137)
                      +++.+|.|+|  ||..||++.+|.|.|++|.  |++|+|+|. .|++|      |.+|+|+|++|.    ..++++||..
T Consensus         6 ~~~~~G~i~SP~yP~~Y~~~~~C~w~I~~p~--g~~i~l~F~~~f~le~~~~~~c~~d~l~v~~~~----~~~~~~Cg~~   79 (114)
T d1nt0a2           6 FTGRSGFLSSPEYPQPYPKLSSCAYNIRLEE--GFSITLDFVESFDVEMHPEAQCPYDSLKIQTDK----REYGPFCGKT   79 (114)
T ss_dssp             ECSSSEEEECTTTTSCCCSSCEEEEEEECCS--SCEEEEEECSCCBBCCC----C--CEEEEECSS----CEEEEECBSS
T ss_pred             CcCCCEEEECCCCCCCCCCCCeEEEEEEeCC--CCceeeEEeeeeccccccccccccceeeeeeec----cceecccCCc
Confidence            3578899996  9999999999999999998  999999996 58874      889999999983    4678999999


Q ss_pred             cCCCeEEeCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          72 YEGDYSIHRVPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        72 ~p~~~~s~~~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      .|..+.+.++.++|.|.+|....++||++.|.+.
T Consensus        80 ~p~~~~S~~n~l~i~F~Sd~~~~~~GF~~~y~s~  113 (114)
T d1nt0a2          80 LPPRIETDSNKVTITFTTDESGNHTGWKIHYTST  113 (114)
T ss_dssp             CCCCEECSSSEEEEEEECCSCCCCCBCEEEEEEE
T ss_pred             CCCCeEecCCEEEEEEEECCCCCCCCEEEEEEEE
Confidence            9999999999999999999999999999999875

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.5e-25  Score=143.42  Aligned_cols=100  Identities=23%  Similarity=0.301  Sum_probs=84.4

Q ss_pred             CcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEee----eeceEEEEecCCCCCCceeEEeeCCcc----C
Q psy3691           4 KSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATE----CGWDHLYIFDGDSVHAPLLGVFSGLMY----E   73 (137)
Q Consensus         4 ~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~le----c~~D~l~I~dg~~~~~~~l~~~cG~~~----p   73 (137)
                      ..|.|+|  ||..||++.+|.|.|+++.  +++|+|+|.+|+||    |.+|||+|+||.......++++|+...    +
T Consensus         9 ~~G~i~SP~yP~~Yp~~~~C~W~I~~p~--g~~I~l~f~~fdle~~~~C~~D~l~i~dg~~~~~~~~g~~~~~~~~~~~~   86 (121)
T d1szba1           9 VFGRLASPGFPGEYANDQERRWTLTAPP--GYRLRLYFTHFDLELSHLCEYDFVKLSSGAKVLATLCGQESTDTERAPGK   86 (121)
T ss_dssp             CEEEEECTTTTSCCCSSCEEEEEEECCT--TEEEEEEEEEEECCCCTTSCSSEEEEESSSSEEEEECSBTTTTCSSSCTT
T ss_pred             CCeEEeCCCCCCCCCCCCeEEEEEEeCC--CceeEEEeeeeeeeeeccccccceeeecCCccccceeccccCCCcCCCCC
Confidence            3799996  9999999999999999998  99999999999996    889999999997655555666666543    2


Q ss_pred             CCeEEeCCeEEEEEEcCCCcC--CCCeEEEEEee
Q psy3691          74 GDYSIHRVPDVKCFTITNELG--NTGIQIVLGND  105 (137)
Q Consensus        74 ~~~~s~~~~~~v~f~sd~~~~--~~GF~~~y~~~  105 (137)
                      ..+.+.++.++|.|.+|....  .+||++.|.++
T Consensus        87 ~~~~S~~n~l~i~F~Sd~s~~~~~~GF~~~y~a~  120 (121)
T d1szba1          87 DTFYSLGSSLDITFRSDYSNEKPFTGFEAFYAAE  120 (121)
T ss_dssp             CCEECSSSEEEEEEECCSCCSSCCCEEEEEEEEE
T ss_pred             ceEEEcCCEEEEEEEECCCCccCCCCEEEEEEEE
Confidence            357888899999999986554  57999999875

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=2.3e-24  Score=140.18  Aligned_cols=96  Identities=18%  Similarity=0.266  Sum_probs=83.9

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEE
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSI   78 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s   78 (137)
                      |++.+|.|+|  ||..|     |.|+|++|+  +++|+|+|.+|+++|..|||+||||.. ....++++||... ..+.+
T Consensus        13 l~~~~G~i~SP~~P~~~-----C~W~I~~p~--~~~I~l~f~~f~~~C~~d~l~I~dg~~-~~~~l~~~Cg~~~-~~~~S   83 (112)
T d1sppb_          13 IKDTSGSISNTDRQKNL-----CTWTILMKP--DQKVRMAIPYLNLACGKEYVEVFDGLL-SGPSYGKLCAGAA-IVFLS   83 (112)
T ss_dssp             ECCSEEEEECCSSCCSE-----EEEEEECCT--TCEEEEEEEEEECCBTTEEEEEESSST-TSCEEEEESEEEE-EEEEC
T ss_pred             EeCCcceEeCCCCCCCc-----eEEEEecCC--cEEEEEEEEehhcccccceeEEEeccC-cceeeeeecCCCC-ccccc
Confidence            3567888886  77654     999999998  999999999999999999999999974 4668899999754 46888


Q ss_pred             eCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          79 HRVPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        79 ~~~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      .++.++|.|.+|....++||++.|...
T Consensus        84 ~sn~l~v~f~s~~~~~~~GF~~~y~~~  110 (112)
T d1sppb_          84 TANTMTIKYNRISGNSSSPFLIYFYGS  110 (112)
T ss_dssp             SSSEEEEEEEESSCSCCCCCEEEEEEE
T ss_pred             cccEEEEEEEECCCCCCCCEEEEEEEe
Confidence            899999999999999999999999753

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1.2e-23  Score=136.24  Aligned_cols=97  Identities=21%  Similarity=0.338  Sum_probs=84.9

Q ss_pred             CCCcEEEEeCCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEEeCC
Q psy3691           2 SDKSGIIIDGPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSIHRV   81 (137)
Q Consensus         2 t~~~G~i~syP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s~~~   81 (137)
                      ++..|.|+|   +|+++.+|.|.|+++.  |++|+|+|.+|+++|..|+|+|+||.. ....++++||...+ .+.+.++
T Consensus        12 t~~~G~i~S---Py~~~~~C~w~I~~p~--g~~I~l~f~~f~~~c~~d~v~i~dg~~-~~~~~~~~cg~~~~-~~~S~~n   84 (111)
T d1sfpa_          12 KEESGVIAT---YYGPKTNCVWTIQMPP--EYHVRVSIQYLQLNCNKESLEIIDGLP-GSPVLGKICEGSLM-DYRSSGS   84 (111)
T ss_dssp             CCSEEEEEC---CCSSCSEEEEEEECCT--TCEEEEEEEEEECCTTTEEEEEESSST-TSCEEEEESEEEEE-EEECSSS
T ss_pred             ECCceeEcC---CCCCCCcEEEEEEcCC--CceeeEEEeecccccceeeeeecCCcc-ceeeeccccCCCcC-CEEeCCC
Confidence            455666654   4778999999999998  999999999999999999999999975 45678999998654 6888899


Q ss_pred             eEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          82 PDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        82 ~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      .++|.|.+|....++||++.|..+
T Consensus        85 ~l~v~F~sd~~~~~~GF~~~y~~~  108 (111)
T d1sfpa_          85 IMTVKYIREPEHPASFYEVLYFQD  108 (111)
T ss_dssp             EEEEEEEECTTSCCCCCEEEEEEE
T ss_pred             EEEEEEEECCCcCCCCEEEEEEEe
Confidence            999999999999999999999865

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.89  E-value=3.2e-23  Score=133.91  Aligned_cols=95  Identities=17%  Similarity=0.319  Sum_probs=82.6

Q ss_pred             CCCCcEEEEe--CCCCCCCCCeeEEEEEeCCCCCcEEEEEeCeEEeeeeceEEEEecCCCCCCceeEEeeCCccCCCeEE
Q psy3691           1 LSDKSGIIID--GPGNYSIDVKCSWLIDASDTPNATIRLHFNSFATECGWDHLYIFDGDSVHAPLLGVFSGLMYEGDYSI   78 (137)
Q Consensus         1 lt~~~G~i~s--yP~~Yp~~~~C~W~I~~~~~pg~~I~L~F~~f~lec~~D~l~I~dg~~~~~~~l~~~cG~~~p~~~~s   78 (137)
                      |++..|.|+|  ||     +.+|.|.|++|+  |++|+|+|.+|+++|..|+|+||+|... ...++++||.  |..+.+
T Consensus        10 l~~~~G~i~Sp~yP-----~~~C~W~I~~p~--g~~I~l~f~~f~~~c~~d~l~i~~g~~~-~~~~~~~c~~--~~~~~s   79 (109)
T d1sppa_          10 LTDDYGTIFTYKGP-----KTECVWTLQVDP--KYKLLVSIPTLNLTCGKEYVEVLEGAPG-SKSLGKFCEG--LSILNR   79 (109)
T ss_dssp             EECSEEEEECCCSS-----CSEEEEEEECCT--TSEEEEEEEEEECCTTTEEEEEESSSTT-SCEEEEESEE--EEEEEE
T ss_pred             EeCCCEEEeCCCCC-----CCcEEEEEEEcc--CceeEEEEeccccccceeeeeeecCCCc-cceeeeecCC--ccccee
Confidence            3567888886  55     468999999998  9999999999999999999999999754 5567899986  446788


Q ss_pred             eCCeEEEEEEcCCCcCCCCeEEEEEee
Q psy3691          79 HRVPDVKCFTITNELGNTGIQIVLGND  105 (137)
Q Consensus        79 ~~~~~~v~f~sd~~~~~~GF~~~y~~~  105 (137)
                      .++.++|.|.+|....++||++.|..+
T Consensus        80 ~~n~~~i~F~Sd~~~~~~GF~~~y~~~  106 (109)
T d1sppa_          80 GSSGMTVKYKRDSGHPASPYEIIFLRD  106 (109)
T ss_dssp             ECTTCEEEEEECTTCCCCCCEEEEEEE
T ss_pred             ccceEEEEEEECCCCCCCCEEEEEEEe
Confidence            899999999999999999999999754