Psyllid ID: psy3694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIEL
Secondary Structure (PSIPRED)
cccccccccccEEEEcccEEEEEEEccccccccEEEEEEcccccccccEEEEEEcccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHccccHHHHHHccccccccEEEEEEcccccccccEEEEcccccEEEc
Coil and Loop (DISEMBL)
macgrgprsTVRVLRHGLEVSEMAvselpsnpnavwtvkrrsddrvslfhqpsispsmiel
Flexible Loop (DISEMBL)
macgrgprstvrvLRHGLEVSemavselpsnpnavWTVKRRsddrvslfhqpsispsmiel
Low Complexity Region (SEG)
MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIEL
Disordered region (IsUnstruct)
*************************************************************
Disordered Region (DISOPRED)
*******RSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIEL
Disordered Region (DISEMBL)
*********TVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIEL
Disordered Region (DISPRO)
**C*RGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMI*L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q1LVE8	1217	Splicing factor 3B subuni	yes	N/A	0.803	0.040	0.755	2e-16
Q921M3	1217	Splicing factor 3B subuni	yes	N/A	0.803	0.040	0.734	7e-16
Q15393	1217	Splicing factor 3B subuni	yes	N/A	0.803	0.040	0.734	7e-16
A0JN52	1217	Splicing factor 3B subuni	yes	N/A	0.803	0.040	0.734	7e-16
Q5RBI5	1217	Splicing factor 3B subuni	yes	N/A	0.803	0.040	0.714	3e-15
Q52E49	1216	Pre-mRNA-splicing factor	N/A	N/A	0.754	0.037	0.543	3e-09
P0CR22	1217	Pre-mRNA-splicing factor	yes	N/A	0.704	0.035	0.604	8e-09
P0CR23	1217	Pre-mRNA-splicing factor	N/A	N/A	0.704	0.035	0.604	8e-09
Q7RYR4	1209	Pre-mRNA-splicing factor	N/A	N/A	0.704	0.035	0.604	9e-09
Q4PGM6	1221	Pre-mRNA-splicing factor	N/A	N/A	0.786	0.039	0.520	3e-08

>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct: 425 VACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAY 473

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Danio rerio (taxid: 7955)

>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Mus musculus (taxid: 10090)

>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Homo sapiens (taxid: 9606)

>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Bos taurus (taxid: 9913)

>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 41/49 (83%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSE AVSELP NPNAVWTV+R  +D    +
Sbjct: 425 VACGRGPRSSLRVLRHGLEVSETAVSELPGNPNAVWTVRRHIEDEFDAY 473

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Pongo abelii (taxid: 9601)

>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 4   GRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           G+G RST R+L+HGLEV+E+  S+LP  P+AVWT K R DD    +
Sbjct: 447 GKGARSTFRMLKHGLEVNEIVASQLPGTPSAVWTTKLRRDDEYDAY 492

Involved in pre-mRNA splicing and cell cycle control.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RSE1 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 30/43 (69%)

Query: 2   ACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDD 44
           ACGRG RST R L+HGL+V+EM  S LP  P  VWT+K   DD
Sbjct: 445 ACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVWTLKLTEDD 487

Involved in pre-mRNA splicing and cell cycle control.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 30/43 (69%)

Query: 2   ACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDD 44
           ACGRG RST R L+HGL+V+EM  S LP  P  VWT+K   DD
Sbjct: 445 ACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVWTLKLTEDD 487

Involved in pre-mRNA splicing and cell cycle control.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rse-1 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/43 (60%), Positives = 31/43 (72%)

Query: 3   CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDR 45
           CG G RST R+L+HGLEVSE+  SELP  P+AVWT K    D+
Sbjct: 446 CGNGARSTFRMLKHGLEVSEIVASELPGTPSAVWTTKLTKYDQ 488

Involved in pre-mRNA splicing and cell cycle control.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=RSE1 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query: 2   ACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           ACGRG RS+ ++LRHGLEV E   S+LP  P+AVWT K    D    +
Sbjct: 443 ACGRGARSSFKMLRHGLEVQEAVSSDLPGVPSAVWTTKITQQDEYDSY 490

Involved in pre-mRNA splicing and cell cycle control.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
170041368	1215	splicing factor 3B subunit 3 [Culex quin	0.803	0.040	0.775	1e-16
91092128	1219	PREDICTED: similar to AGAP005549-PA [Tri	0.803	0.040	0.816	2e-16
31213215	1217	AGAP005549-PA [Anopheles gambiae str. PE	0.803	0.040	0.775	4e-16
390357128	949	PREDICTED: splicing factor 3B subunit 3-	0.803	0.051	0.775	5e-16
312370905	1287	hypothetical protein AND_22901 [Anophele	0.803	0.038	0.775	5e-16
195586770	1227	GD13507 [Drosophila simulans] gi|1941951	0.770	0.038	0.808	6e-16
194749950	1228	GF24063 [Drosophila ananassae] gi|190624	0.770	0.038	0.808	6e-16
125977518	1228	GA12611 [Drosophila pseudoobscura pseudo	0.770	0.038	0.808	6e-16
307205956	1217	Splicing factor 3B subunit 3 [Harpegnath	0.803	0.040	0.795	6e-16
194864680	1227	GG14635 [Drosophila erecta] gi|190652839	0.770	0.038	0.808	6e-16

>gi|170041368|ref|XP_001848437.1| splicing factor 3B subunit 3 [Culex quinquefasciatus] gi|167864946|gb|EDS28329.1| splicing factor 3B subunit 3 [Culex quinquefasciatus]

 Score = 90.9 bits (224), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTVK+R+DD    +
Sbjct: 425 LACGRGPRSSIRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAY 473

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092128|ref|XP_972649.1| PREDICTED: similar to AGAP005549-PA [Tribolium castaneum] gi|270004662|gb|EFA01110.1| hypothetical protein TcasGA2_TC010322 [Tribolium castaneum]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           M CGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTVKRRSDD    +
Sbjct: 425 MLCGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKRRSDDEYDAY 473

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|31213215|ref|XP_315551.1| AGAP005549-PA [Anopheles gambiae str. PEST] gi|21299714|gb|EAA11859.1| AGAP005549-PA [Anopheles gambiae str. PEST]

 Score = 89.0 bits (219), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTVK+R DD    +
Sbjct: 425 LACGRGPRSSIRVLRHGLEVSEMAVSELPGNPNAVWTVKKRIDDEFDAY 473

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390357128|ref|XP_001198237.2| PREDICTED: splicing factor 3B subunit 3-like [Strongylocentrotus purpuratus]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTVK++SDD    +
Sbjct: 157 VACGRGPRSSMRVLRHGLEVSEMAVSELPGNPNAVWTVKKKSDDEYDAY 205

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|312370905|gb|EFR19207.1| hypothetical protein AND_22901 [Anopheles darlingi]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTVK+R DD    +
Sbjct: 498 LACGRGPRSSIRVLRHGLEVSEMAVSELPGNPNAVWTVKKRIDDEFDAY 546

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195586770|ref|XP_002083143.1| GD13507 [Drosophila simulans] gi|194195152|gb|EDX08728.1| GD13507 [Drosophila simulans]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 3   CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           CGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTVK+R+DD    +
Sbjct: 427 CGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAY 473

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194749950|ref|XP_001957397.1| GF24063 [Drosophila ananassae] gi|190624679|gb|EDV40203.1| GF24063 [Drosophila ananassae]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 3   CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           CGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTVK+R+DD    +
Sbjct: 427 CGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAY 473

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125977518|ref|XP_001352792.1| GA12611 [Drosophila pseudoobscura pseudoobscura] gi|54641542|gb|EAL30292.1| GA12611 [Drosophila pseudoobscura pseudoobscura]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 3   CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           CGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTVK+R+DD    +
Sbjct: 427 CGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAY 473

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205956|gb|EFN84082.1| Splicing factor 3B subunit 3 [Harpegnathos saltator]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 43/49 (87%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           +ACGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTVKRR D+    +
Sbjct: 425 IACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKRRVDEEYDAY 473

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864680|ref|XP_001971056.1| GG14635 [Drosophila erecta] gi|190652839|gb|EDV50082.1| GG14635 [Drosophila erecta]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query: 3   CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
           CGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTVK+R+DD    +
Sbjct: 427 CGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAY 473

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
FB|FBgn0035162	1227	CG13900 [Drosophila melanogast	0.770	0.038	0.808	1.9e-15
ZFIN|ZDB-GENE-040426-2901	1217	sf3b3 "splicing factor 3b, sub	0.803	0.040	0.755	1e-14
RGD|1311636	902	Sf3b3 "splicing factor 3b, sub	0.803	0.054	0.734	1.9e-14
UNIPROTKB|E9PT66	920	Sf3b3 "Protein Sf3b3" [Rattus	0.803	0.053	0.734	1.9e-14
UNIPROTKB|A0JN52	1217	SF3B3 "Splicing factor 3B subu	0.803	0.040	0.734	2.8e-14
UNIPROTKB|E2RR33	1217	SF3B3 "Uncharacterized protein	0.803	0.040	0.734	2.8e-14
UNIPROTKB|Q15393	1217	SF3B3 "Splicing factor 3B subu	0.803	0.040	0.734	2.8e-14
MGI|MGI:1289341	1217	Sf3b3 "splicing factor 3b, sub	0.803	0.040	0.734	2.8e-14
UNIPROTKB|F1P529	1228	SF3B3 "Uncharacterized protein	0.803	0.039	0.734	2.8e-14
WB|WBGene00019323	1220	teg-4 [Caenorhabditis elegans	0.688	0.034	0.690	1.9e-10

FB|FBgn0035162 CG13900 [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 38/47 (80%), Positives = 42/47 (89%)

Query:     3 CGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             CGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTVK+R+DD    +
Sbjct:   427 CGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVKKRADDEFDAY 473

GO:0003684 "damaged DNA binding" evidence=ISS

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005686 "U2 snRNP" evidence=ISS;IDA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-040426-2901 sf3b3 "splicing factor 3b, subunit 3" [Danio rerio (taxid:7955)]

 Score = 201 (75.8 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRST+RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   425 VACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAY 473

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

RGD|1311636 Sf3b3 "splicing factor 3b, subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   205 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 253

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|E9PT66 Sf3b3 "Protein Sf3b3" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   128 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 176

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A0JN52 SF3B3 "Splicing factor 3B subunit 3" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RR33 SF3B3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 197 (74.4 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15393 SF3B3 "Splicing factor 3B subunit 3" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:1289341 Sf3b3 "splicing factor 3b, subunit 3" [Mus musculus (taxid:10090)]

 Score = 197 (74.4 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAY 473

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|F1P529 SF3B3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 36/49 (73%), Positives = 42/49 (85%)

Query:     1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
             +ACGRGPRS++RVLRHGLEVSEMAVSELP NPNAVWTV+R  +D    +
Sbjct:   425 VACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAY 473

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

WB|WBGene00019323 teg-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 161 (61.7 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 29/42 (69%), Positives = 38/42 (90%)

Query:     4 GRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDR 45
             GRG RS+++VLR+GLE+SEMAVS+LP NPNAVWTVK+  +D+
Sbjct:   428 GRGARSSLKVLRNGLEISEMAVSDLPGNPNAVWTVKKNIEDQ 469

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0016477 "cell migration" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q15393	SF3B3_HUMAN	No assigned EC number	0.7346	0.8032	0.0402	yes	N/A
Q921M3	SF3B3_MOUSE	No assigned EC number	0.7346	0.8032	0.0402	yes	N/A
A0JN52	SF3B3_BOVIN	No assigned EC number	0.7346	0.8032	0.0402	yes	N/A
Q1LVE8	SF3B3_DANRE	No assigned EC number	0.7551	0.8032	0.0402	yes	N/A
Q9UTT2	RSE1_SCHPO	No assigned EC number	0.5238	0.6885	0.0348	yes	N/A
Q4WLI5	RSE1_ASPFU	No assigned EC number	0.5434	0.7540	0.0375	yes	N/A
Q5B1X8	RSE1_EMENI	No assigned EC number	0.6428	0.6721	0.0339	yes	N/A
P0CR22	RSE1_CRYNJ	No assigned EC number	0.6046	0.7049	0.0353	yes	N/A
Q5RBI5	SF3B3_PONAB	No assigned EC number	0.7142	0.8032	0.0402	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	61
pfam10433	513	pfam10433, MMS1_N, Mono-functional DNA-alkylating	4e-05

>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 2   ACGRGPRSTVRVLRHGLEVSEMAVSELP-SNPNAVWTVKRRSDDRVSLF 49
             G G R ++R LRHG+E     V E        +W +   S+    L 
Sbjct: 339 CSGVGKRGSLRELRHGIEAEIGLVIEEELRGIRGLWLLPSGSNGGYYLL 387

MMS1 is a protein that protects against replication-dependent DNA damage in Saccharomyces cerevisiae. MMS1 belongs to the DDB1 family of cullin 4 adaptors and the two proteins are homologous. MMS1 bridges the interaction of MMS22 and Crt10 with Cul8/Rtt101. Cul8/Rtt101 is a cullin protein involved in the regulation of DNA replication subsequent to DNA damage. The N-terminal region of MMS1 and the C-terminal of MMS22 are required for the the MMS1-MMS22 interaction. The human HIV-1 virion-associated protein Vpr assembles with DDB1 through interaction with DCAF1 (chromatin assembly factor) to form an E3 ubiquitin ligase that targets cellular substrates for proteasome-mediated degradation and subsequent G2 arrest. Length = 513

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
KOG1898|consensus	1205		99.78
KOG1897|consensus	1096		99.76
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	99.61
KOG1896|consensus	1366		98.03

>KOG1898|consensus

Probab=99.78  E-value=3.3e-20  Score=146.86  Aligned_cols=61  Identities=51%  Similarity=0.851  Sum_probs=58.8

Q ss_pred             CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeeeC
Q psy3694           1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIEL   61 (61)
Q Consensus         1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~~   61 (61)
                      +|||+|++|+||+|||||+++|++.++||++|+++||+|.+.+|.||.|||+||++.||-|
T Consensus       423 ~~cg~~~~sslr~lR~gle~sel~~t~lp~~~ta~WTvk~~~td~ydsyivvsF~n~TlVL  483 (1205)
T KOG1898|consen  423 SACGRGPRSSLRILRNGLEVSELLVTELPGNPTATWTVKKNITDVYDSYIVVSFVNGTLVL  483 (1205)
T ss_pred             hhhCcCccccchhhccccchHHHhhhccCCCCceEEEEcCccccccceEEEEEeeccEEEE
Confidence            4899999999999999999999999999999999999999999999999999999999854

>KOG1897|consensus

Probab=99.76  E-value=8.5e-19  Score=138.28  Aligned_cols=59  Identities=20%  Similarity=0.406  Sum_probs=56.1

Q ss_pred             CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeee
Q psy3694           1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIE   60 (61)
Q Consensus         1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~   60 (61)
                      +|||+++|||||++||||+++|+|+++||| ++++|++|...+++||+||||||+++|--
T Consensus       374 tCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~~eTrv  432 (1096)
T KOG1897|consen  374 TCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFISETRV  432 (1096)
T ss_pred             EEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEeccceEE
Confidence            599999999999999999999999999999 69999999888899999999999999953

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=99.61  E-value=7.7e-16  Score=111.76  Aligned_cols=57  Identities=33%  Similarity=0.583  Sum_probs=51.5

Q ss_pred             CeeecCCCCeeeEEecCCcce--EEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeee
Q psy3694           1 MACGRGPRSTVRVLRHGLEVS--EMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIE   60 (61)
Q Consensus         1 ~~~G~g~~ssLrvlr~Gi~v~--el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~   60 (61)
                      +|||.|++|+||++|||++++  +++..+||+ ++++|++|...++  |.|||+||.++|+-
T Consensus       326 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~--~~~lv~S~~~~T~v  384 (504)
T PF10433_consen  326 ACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSD--HSYLVLSFPNETRV  384 (504)
T ss_dssp             EEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSS--BSEEEEEESSEEEE
T ss_pred             EEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCC--ceEEEEEcCCceEE
Confidence            699999999999999999999  999999999 7999999987655  99999999999984

...

>KOG1896|consensus

Probab=98.03  E-value=8.3e-06  Score=66.89  Aligned_cols=59  Identities=20%  Similarity=0.330  Sum_probs=52.1

Q ss_pred             CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCC-----CCCccEEEEeECCCeee
Q psy3694           1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSD-----DRVSLFHQPSISPSMIE   60 (61)
Q Consensus         1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~-----d~~d~ylvlSf~~~t~~   60 (61)
                      +|+|.|++|.|.|+|+.|.++-..+.+|||- .++||++.+..     +.-|.|+++|-.++||-
T Consensus       504 ~~sGhgkngaL~V~r~sI~P~i~t~fel~Gc-~~iWtV~~~~~~~~~~~~~h~~lilS~e~~t~i  567 (1366)
T KOG1896|consen  504 ATSGHGKNGALSVIRRSIRPEIATEFELPGC-VDIWTVFIKGRKREEDNTQHLYLILSTESRTMI  567 (1366)
T ss_pred             EeccCCCCcceEEEeecccceeeEEEEecCe-eeEEEEEEeccccccccCcceEEEeecccchhh
Confidence            5899999999999999999999999999996 99999997432     33489999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	61
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	2e-06

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 1   MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLF 49
              G     ++R++R+G+ + E A  +LP     +W ++   +      
Sbjct: 395 TCSGAFKEGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDT 442

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	99.66

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=99.66  E-value=8.6e-17  Score=125.80  Aligned_cols=59  Identities=17%  Similarity=0.310  Sum_probs=56.0

Q ss_pred             CeeecCCCCeeeEEecCCcceEEEEecCCCCcceeEEeecCCCCCCccEEEEeECCCeee
Q psy3694           1 MACGRGPRSTVRVLRHGLEVSEMAVSELPSNPNAVWTVKRRSDDRVSLFHQPSISPSMIE   60 (61)
Q Consensus         1 ~~~G~g~~ssLrvlr~Gi~v~el~ss~LP~~p~~vWT~k~~~~d~~d~ylvlSf~~~t~~   60 (61)
                      +|||+|++|+||+|||||+++++++++||+. +++||+|...+|+||+|||+||.++|+-
T Consensus       395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv-~~iWtl~~~~~~~~~~yLvlS~~~~T~V  453 (1158)
T 3ei3_A          395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPGI-KGLWPLRSDPNRETDDTLVLSFVGQTRV  453 (1158)
T ss_dssp             EEECCGGGCEEEEEEESBCEEEEEEECCCSC-CEEEEECCCSSCSSCCEEEEEETTEEEE
T ss_pred             EEECcCCCCeEEEEecCCCEEEEEeecCCCc-cEEEEEeecCCCCCCCEEEEECCCCeEE
Confidence            5999999999999999999999999999986 9999999887889999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005