Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 54/125 (43%), Gaps = 38/125 (30%)
Query: 2 YTGEACDVPICPNNC---------------SYS----SVNSCPSSKSDKPCSGQGVCIEG 42
+TGE C CP +C YS S SCP C G+G C++G
Sbjct: 518 FTGEDCGSRRCPGDCRGHGLCEDGVCVCDAGYSGEDCSTRSCPGG-----CRGRGQCLDG 572
Query: 43 VCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKYKEMKQLFDACDVSKNAHS 102
C C+ Y+GE C V CPN+CS +GVC+ C C + Y VS++
Sbjct: 573 RCVCEDGYSGEDCGVRQCPNDCS-QHGVCQDGV--CICWEGY-----------VSEDCSI 618
Query: 103 VACPS 107
CPS
Sbjct: 619 RTCPS 623
Appears to mediate interactions between cells and the extracellular matrix. Substrate-adhesion molecule that appears to inhibit cell migration. Accelerates collagen fibril formation. May play a role in supporting the growth of epithelial tumors.
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 2 YTGEACDVPICPNNCSYSSV--------------NSCPSSKSDKPCSGQGVCIEGVCTCD 47
+ G+ C P CP CS V + C + CS +G+C++G C C+
Sbjct: 194 WFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCE 253
Query: 48 AMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
YTGE C CP +CS G C + C C + Y
Sbjct: 254 EPYTGEDCRELRCPGDCS-GKGQCAN--GTCLCQEGY 287
Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components. Theses interactions can influence cellular behavior by either evoking a stable adhesion and differentiation, or repulsion and inhibition of neurite growth. Binding to cell surface gangliosides inhibits RGD-dependent integrin-mediated cell adhesion and results in an inhibition of PTK2/FAK1 (FAK) phosphorylation and cell detachment. Binding to membrane surface sulfatides results in a oligodendrocyte adhesion and differentiation. Interaction with CNTN1 induces a repulsion of neurons and an inhibition of neurite outgrowth. Interacts with SCN2B may play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier. TNR-linked chondroitin sulfate glycosaminoglycans are involved in the interaction with FN1 and mediates inhibition of cell adhesion and neurite outgrowth. The highly regulated addition of sulfated carbohydrate structure may modulate the adhesive properties of TNR over the course of development and during synapse maintenance.
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 2 YTGEACDVPICPNNCSYSSV--------------NSCPSSKSDKPCSGQGVCIEGVCTCD 47
+ G+ C P CP CS V + C + CS +G+C++G C C+
Sbjct: 194 WFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCE 253
Query: 48 AMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
YTGE C CP +CS G C + C C + Y
Sbjct: 254 EPYTGEDCRELRCPGDCS-GKGQCAN--GTCLCQEGY 287
Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components. Theses interactions can influence cellular behavior by either evoking a stable adhesion and differentiation, or repulsion and inhibition of neurite growth. Binding to cell surface gangliosides inhibits RGD-dependent integrin-mediated cell adhesion and results in an inhibition of PTK2/FAK1 (FAK) phosphorylation and cell detachment. Binding to membrane surface sulfatides results in a oligodendrocyte adhesion and differentiation. Interaction with CNTN1 induces a repulsion of neurons and an inhibition of neurite outgrowth. Interacts with SCN2B may play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier. TNR-linked chondroitin sulfate glycosaminoglycans are involved in the interaction with FN1 and mediates inhibition of cell adhesion and neurite outgrowth. The highly regulated addition of sulfated carbohydrate structure may modulate the adhesive properties of TNR over the course of development and during synapse maintenance.
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 18/88 (20%)
Query: 2 YTGEACDVPICPNNCSYSSV--------------NSCPSSKSDKPCSGQGVCIEGVCTCD 47
+ G+ C P CP CS V + C + CS +G+C++G C C+
Sbjct: 194 WFGKNCSEPYCPLGCSSRGVCVDGQCICDSEYSGDDCSELRCPTDCSSRGLCVDGECVCE 253
Query: 48 AMYTGEACDVPICPNNCS----YSNGVC 71
YTGE C CP +CS +NG C
Sbjct: 254 EPYTGEDCRELRCPGDCSGKGRCANGTC 281
Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components. These interactions can influence cellular behavior by either evoking a stable adhesion and differentiation, or repulsion and inhibition of neurite growth. Binding to cell surface gangliosides inhibits RGD-dependent integrin-mediated cell adhesion and results in an inhibition of PTK2/FAK1 (FAK) phosphorylation and cell detachment. Binding to membrane surface sulfatides results in a oligodendrocyte adhesion and differentiation. Interaction with CNTN1 induces a repulsion of neurons and an inhibition of neurite outgrowth. Interacts with SCN2B may play a crucial role in clustering and regulation of activity of sodium channels at nodes of Ranvier. TNR-linked chondroitin sulfate glycosaminoglycans are involved in the interaction with FN1 and mediate inhibition of cell adhesion and neurite outgrowth. The highly regulated addition of sulfated carbohydrate structure may modulate the adhesive properties of TNR over the course of development and during synapse maintenance.
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 2 YTGEACDVPICPNNCSYSSV--------------NSCPSSKSDKPCSGQGVCIEGVCTCD 47
Y GE C CP C + C + + CSG+G C G C C
Sbjct: 224 YGGEDCSQLRCPAGCGSRGLCVDGECICEEGFGGEDCSQPRCPRDCSGRGHCDNGTCVCA 283
Query: 48 AMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
Y GE C CPN CS GVC+ C C D Y
Sbjct: 284 EGYAGEDCGWLRCPNACS-GRGVCQDGL--CICEDGY 317
Neural extracellular matrix (ECM) protein involved in interactions with different cells and matrix components. Involved in cell attachment and neurite formation. Interaction with CNTN1 enhances the neurite outgrowth.
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 2 YTGEACDVPICPNNCSYSSV--------------NSCPSSKSDKPCSGQGVCIEGVCTCD 47
+TG C +C +C + V N C D CS G C G C C
Sbjct: 716 WTGPDCSQAVCSLDCGRNGVCESGKCRCNSGWTGNLCDQLPCDSRCSEHGQCKNGTCVCS 775
Query: 48 AMYTGEACDVPICPNNCSYSNGVCKHEF--HRCECMDKY 84
+ G C +P C N CS +G C E +RC+C++ +
Sbjct: 776 QGWNGRHCTLPGCENGCS-RHGQCTLENGEYRCDCIEGW 813
Involved in neural development, regulating the establishment of proper connectivity within the nervous system. Acts as a homophilic and heterophilic synaptic cell adhesion molecule that drives synapse assembly. Promotes bi-directional trans-synaptic signaling with ten-m to organize neuromuscular synapses.
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 15/91 (16%)
Query: 13 PNNCSYSSVNS-CPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPIC--PNNCSYS-N 68
P++ Y + S CPS CSG G C G C CD Y G+ C+ +C NNC+ + N
Sbjct: 364 PDSVFYGTFKSICPSD-----CSGHGECNYGTCVCDHNYQGQGCEEELCLTLNNCTGTDN 418
Query: 69 GVCKHEFHRCECMDKYK----EMKQLFDACD 95
G C++ F C C +++ E+++ D+C+
Sbjct: 419 GKCENGF--CYCSSEWEGAQCEIRRCKDSCN 447
Involved in substrate adhesion, myosin-independent cytokinesis, organization of actin cytoskeleton, and phagocytosis.
Score = 144 (55.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 35 GQGVCIEGVCTCDAMYTGEACDVPICPNNC--SYSNGVCKHEFHRCECMDKY 84
G G C +G C CD MY GEAC++ CPNNC S + G C+ + RC C + +
Sbjct: 228 GHGKCRDGDCICDPMYRGEACNIAACPNNCFESKNQGHCRLDQERCSCYEGF 279
Score = 122 (48.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 36 QGVCIEGVCTCDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
QG C+ G C C + + GE C + C NNCS GVCK F C C + Y
Sbjct: 268 QGACVNGSCQCRSGFLGEDCSLIFCANNCS-QRGVCKEGF--CVCQEGY 313
Score = 104 (41.7 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 35 GQGVCIEGVCTCDAMYTGEACDVPICPN-NCSYSNGVCKHEFHRCEC 80
G+G+CI G C C++ Y GE+C+ C + CS ++GVC H C C
Sbjct: 589 GRGICIMGSCACNSGYKGESCEEADCIDPGCS-NHGVCIHG--ECHC 632
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins
The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates
In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation
They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates
In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium
Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins
It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins
Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Score = 41.2 bits (96), Expect = 2e-05
Identities = 18/79 (22%), Positives = 26/79 (32%)
Query: 2 YTGEACDVPICPNNCSYSSVNSCPSSKSDKPCSGQGVCIEGVCTCDAMYTGEACDVPICP 61
+T + I C ++N + G+G+C G C C + G AC
Sbjct: 498 HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCERTT 557
Query: 62 NNCSYSNGVCKHEFHRCEC 80
C V RC C
Sbjct: 558 EGCLNPRRVECSGRGRCRC 576
Score = 40.6 bits (95), Expect = 3e-05
Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 18/99 (18%)
Query: 2 YTGEACDVPICPNNCSYSSV---------------NSCPSSKSDKPCSGQGVCIE-GVCT 45
+ C CP C C + C G+C+ G C
Sbjct: 141 IFFKTCQQAECPGGCRNGGFCNERRICECPDGFHGPHCEKALCTPRCMNGGLCVTPGFCI 200
Query: 46 CDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
C + G CD C C + G C + +C C
Sbjct: 201 CPPGFYGVNCDKANCSTTCF-NGGTCFYPG-KCICPPGL 237
Score = 39.8 bits (93), Expect = 5e-05
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 18/99 (18%)
Query: 2 YTGEACDVPICPNNCSYSSV---------------NSCPSSKSDKPCSGQGVCIE-GVCT 45
+ G C+ +C C + +C + C G C G C
Sbjct: 173 FHGPHCEKALCTPRCMNGGLCVTPGFCICPPGFYGVNCDKANCSTTCFNGGTCFYPGKCI 232
Query: 46 CDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCECMDKY 84
C GE C++ CP C + G C + +C+C Y
Sbjct: 233 CPPGLEGEQCEISKCPQPCR-NGGKCIGKS-KCKCSKGY 269
Score = 39.1 bits (91), Expect = 9e-05
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 2 YTGEACDVPICPNNCSYSSV---------------NSCPSSKSDKPCSGQGVCI-EGVCT 45
+ G CD C C C SK +PC G CI + C
Sbjct: 205 FYGVNCDKANCSTTCFNGGTCFYPGKCICPPGLEGEQCEISKCPQPCRNGGKCIGKSKCK 264
Query: 46 CDAMYTGEACDVPICPNNCSYSNGVCKHEFHRCEC 80
C Y G+ C P+C C ++G C +C+C
Sbjct: 265 CSKGYQGDLCSKPVCEPGCG-AHGTCHEPN-KCQC 297
Score = 36.5 bits (84), Expect = 7e-04
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 13 PNNCSYSSVNSCPSSKSDKPCSGQGVC-IEGVCTCDAMYTGEACDVPICPNNCSYSNGVC 71
P C + + + G C G C C + G+ C C C + GVC
Sbjct: 378 PEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCEPACRHG-GVC 436
Query: 72 KHEFHRCECMDKY 84
++C C Y
Sbjct: 437 V-RPNKCLCKKGY 448
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
