Psyllid ID: psy3711

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Secondary Structure (PSIPRED)
ccccHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHcccHHHHHHHHHccccEcEccccHEHcccccccccccccccccccccccHccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
myslakfaaspAARSALISSARMTamrplsssitstsaftqqttpqtqqisilpaVRQFQTSAVSRDIDSAAKFIGAGAatvgvagsgagigSVFGSLIIgyarnpslkqQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Flexible Loop (DISEMBL)
myslakfaaspaaRSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Low Complexity Region (SEG)
MYslakfaaspaarsalissaRMTAMRPLsssitstsaftqqttpqtqqisiLPAVRQFQTSAVSRDIDSAAKFIgagaatvgvagsgagigsvfgsLIIGYARNPSLKQQLFSYAILGFALSEamglfslmmaflllfaf
Disordered region (IsUnstruct)
**************************************************SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA*
Disordered Region (DISOPRED)
MYSLAKFAASPAARSALISSARMTAM*************************************VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Disordered Region (DISEMBL)
**************SALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Disordered Region (DISPRO)
MYSLAKFAASPAARSALISSARMTAMRPLSSSITS**********************QF*TSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q9U505	131	ATP synthase lipid-bindin	N/A	N/A	0.929	1.0	0.709	8e-43
P07926	143	ATP synthase lipid-bindin	yes	N/A	0.971	0.958	0.641	3e-42
Q06056	143	ATP synthase lipid-bindin	N/A	N/A	0.971	0.958	0.641	5e-42
Q3ZC75	141	ATP synthase lipid-bindin	no	N/A	0.929	0.929	0.624	2e-41
P56384	141	ATP synthase lipid-bindin	yes	N/A	0.964	0.964	0.645	4e-41
Q71S46	142	ATP synthase lipid-bindin	yes	N/A	0.929	0.922	0.62	4e-41
P48201	142	ATP synthase lipid-bindin	yes	N/A	0.929	0.922	0.62	4e-41
Q5RFL2	142	ATP synthase lipid-bindin	yes	N/A	0.929	0.922	0.62	4e-41
Q06055	141	ATP synthase lipid-bindin	no	N/A	0.964	0.964	0.618	2e-40
Q9CR84	136	ATP synthase lipid-bindin	no	N/A	0.872	0.904	0.698	4e-40

>sp|Q9U505|AT5G_MANSE ATP synthase lipid-binding protein, mitochondrial OS=Manduca sexta PE=2 SV=1

 Score =  172 bits (435), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 100/141 (70%), Positives = 113/141 (80%), Gaps = 10/141 (7%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQ 60
           M S A+  A PAARSA+ S+A +  +RPL++  T T     Q  P     + L AVR FQ
Sbjct: 1   MLSAARLIA-PAARSAIFSNAAV--VRPLAAVSTQT-----QLVPAAP--AQLSAVRSFQ 50

Query: 61  TSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF 120
           T++V++DIDSAAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGF
Sbjct: 51  TTSVTKDIDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGF 110

Query: 121 ALSEAMGLFSLMMAFLLLFAF 141
           ALSEAMGLF LMMAFLLLFAF
Sbjct: 111 ALSEAMGLFCLMMAFLLLFAF 131

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.
Manduca sexta (taxid: 7130)

>sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, mitochondrial OS=Bos taurus GN=ATP5G2 PE=1 SV=1

 Score =  169 bits (429), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 114/145 (78%), Gaps = 8/145 (5%)

Query: 1   MYSLAKFAASPA--ARSALISSARMTAM---RPLSSSITSTSAFTQQTTPQTQQISILPA 55
           MY+ AKF ++P+   R++ + S  ++A+   RP   ++T  S  +    P+    S+ P+
Sbjct: 1   MYTCAKFVSTPSLIRRTSTVLSRSLSAVVVRRP--ETLTDESHSSLAVVPRPLTTSLTPS 58

Query: 56  VRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSY 115
            R FQTSA+SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSY
Sbjct: 59  -RSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSY 117

Query: 116 AILGFALSEAMGLFSLMMAFLLLFA 140
           AILGFALSEAMGLF LM+AFL+LFA
Sbjct: 118 AILGFALSEAMGLFCLMVAFLILFA 142

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Bos taurus (taxid: 9913)

>sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, mitochondrial OS=Ovis aries GN=ATP5G2 PE=2 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 114/145 (78%), Gaps = 8/145 (5%)

Query: 1   MYSLAKFAASPA--ARSALISSARMTAM---RPLSSSITSTSAFTQQTTPQTQQISILPA 55
           MY+ AKF ++P+   R++ + S  ++A+   RP   ++T  S  +    P+    S+ P+
Sbjct: 1   MYTCAKFVSTPSLIRRTSTLLSRSLSAVVVRRP--ETLTDESHSSLAVVPRPLTTSLTPS 58

Query: 56  VRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSY 115
            R FQTSA+SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSY
Sbjct: 59  -RSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSY 117

Query: 116 AILGFALSEAMGLFSLMMAFLLLFA 140
           AILGFALSEAMGLF LM+AFL+LFA
Sbjct: 118 AILGFALSEAMGLFCLMVAFLILFA 142

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Ovis aries (taxid: 9940)

>sp|Q3ZC75|AT5G3_BOVIN ATP synthase lipid-binding protein, mitochondrial OS=Bos taurus GN=ATP5G3 PE=2 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/149 (62%), Positives = 109/149 (73%), Gaps = 18/149 (12%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITS---------TSAFTQQTTPQTQQIS 51
           M++ AK A +PA    LI +    A RP+S+S+ S          + F       +Q I 
Sbjct: 1   MFACAKLACTPA----LIRAGSRVAYRPISASVLSRPETRTGEGCTVFNGTQNGVSQLIQ 56

Query: 52  ILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQ 111
                R+FQT+AV+RDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQ
Sbjct: 57  -----REFQTTAVNRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ 111

Query: 112 LFSYAILGFALSEAMGLFSLMMAFLLLFA 140
           LFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 112 LFSYAILGFALSEAMGLFCLMVAFLILFA 140

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Bos taurus (taxid: 9913)

>sp|P56384|AT5G3_MOUSE ATP synthase lipid-binding protein, mitochondrial OS=Mus musculus GN=Atp5g3 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 108/144 (75%), Gaps = 8/144 (5%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITS---TSAFTQQTTPQTQQISILPAVR 57
           M++ AK A +PA    LI +    A RP+S+S+ S   T      T     Q  +   +R
Sbjct: 1   MFACAKLARTPA----LIRAGSRVAYRPISASVLSRPETRTGEGSTVFNGAQNGVCQLIR 56

Query: 58  -QFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYA 116
            +FQTS +SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYA
Sbjct: 57  REFQTSVISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 116

Query: 117 ILGFALSEAMGLFSLMMAFLLLFA 140
           ILGFALSEAMGLF LM+AFL+LFA
Sbjct: 117 ILGFALSEAMGLFCLMVAFLILFA 140

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Mus musculus (taxid: 10090)

>sp|Q71S46|AT5G3_RAT ATP synthase lipid-binding protein, mitochondrial OS=Rattus norvegicus GN=Atp5g3 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 110/150 (73%), Gaps = 19/150 (12%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITS----------TSAFTQQTTPQTQQI 50
           M++ AK A +P+    LI +    A RP+S+S+ S          ++ F       +Q I
Sbjct: 1   MFACAKLACTPS----LIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLI 56

Query: 51  SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQ 110
                 R+FQTSA+SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQ
Sbjct: 57  Q-----REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 111

Query: 111 QLFSYAILGFALSEAMGLFSLMMAFLLLFA 140
           QLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 112 QLFSYAILGFALSEAMGLFCLMVAFLILFA 141

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Rattus norvegicus (taxid: 10116)

>sp|P48201|AT5G3_HUMAN ATP synthase lipid-binding protein, mitochondrial OS=Homo sapiens GN=ATP5G3 PE=1 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 110/150 (73%), Gaps = 19/150 (12%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITS----------TSAFTQQTTPQTQQI 50
           M++ AK A +P+    LI +    A RP+S+S+ S          ++ F       +Q I
Sbjct: 1   MFACAKLACTPS----LIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLI 56

Query: 51  SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQ 110
                 R+FQTSA+SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQ
Sbjct: 57  Q-----REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 111

Query: 111 QLFSYAILGFALSEAMGLFSLMMAFLLLFA 140
           QLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 112 QLFSYAILGFALSEAMGLFCLMVAFLILFA 141

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Homo sapiens (taxid: 9606)

>sp|Q5RFL2|AT5G3_PONAB ATP synthase lipid-binding protein, mitochondrial OS=Pongo abelii GN=ATP5G3 PE=2 SV=1

 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 93/150 (62%), Positives = 110/150 (73%), Gaps = 19/150 (12%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITS----------TSAFTQQTTPQTQQI 50
           M++ AK A +P+    LI +    A RP+S+S+ S          ++ F       +Q I
Sbjct: 1   MFACAKLACTPS----LIRAGSRVAYRPISASVLSRPEASRTGEGSAVFNGAQNGVSQLI 56

Query: 51  SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQ 110
                 R+FQTSA+SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQ
Sbjct: 57  Q-----REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 111

Query: 111 QLFSYAILGFALSEAMGLFSLMMAFLLLFA 140
           QLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 112 QLFSYAILGFALSEAMGLFCLMVAFLILFA 141

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Pongo abelii (taxid: 9601)

>sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, mitochondrial OS=Homo sapiens GN=ATP5G2 PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 107/144 (74%), Gaps = 8/144 (5%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISI----LPAV 56
           M++ +KF ++P+    L+ S      RPLS+ +          +  +  +S     L + 
Sbjct: 1   MFACSKFVSTPS----LVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSS 56

Query: 57  RQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYA 116
           R FQTSA+SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYA
Sbjct: 57  RSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 116

Query: 117 ILGFALSEAMGLFSLMMAFLLLFA 140
           ILGFALSEAMGLF LM+AFL+LFA
Sbjct: 117 ILGFALSEAMGLFCLMVAFLILFA 140

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Homo sapiens (taxid: 9606)

>sp|Q9CR84|AT5G1_MOUSE ATP synthase lipid-binding protein, mitochondrial OS=Mus musculus GN=Atp5g1 PE=2 SV=1

 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/126 (69%), Positives = 104/126 (82%), Gaps = 3/126 (2%)

Query: 16  ALISSARMTAMRPLSSSITS-TSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKF 74
           ALI S     +RP+S+S+ S   A ++Q +  +  + +  A R+FQTS +SRDID+AAKF
Sbjct: 12  ALIRSCTRGLIRPVSASLLSRPEAPSKQPSCSSSPLQV--ARREFQTSVISRDIDTAAKF 69

Query: 75  IGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMA 134
           IGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+A
Sbjct: 70  IGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVA 129

Query: 135 FLLLFA 140
           FL+LFA
Sbjct: 130 FLILFA 135

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
332030330	138	ATP synthase lipid-binding protein, mito	0.978	1.0	0.751	6e-49
307200014	138	ATP synthase lipid-binding protein, mito	0.978	1.0	0.751	3e-48
91091934	140	PREDICTED: similar to GA14517-PA [Tribol	0.985	0.992	0.725	2e-47
242016971	146	ATP synthase lipid-binding protein, puta	0.929	0.897	0.697	2e-45
383853956	138	PREDICTED: ATP synthase lipid-binding pr	0.978	1.0	0.723	4e-45
307181254	134	ATP synthase lipid-binding protein, mito	0.858	0.902	0.803	5e-45
195341714	138	GM12097 [Drosophila sechellia] gi|194131	0.900	0.920	0.738	8e-45
125772503	138	GA14517, isoform A [Drosophila pseudoobs	0.900	0.920	0.738	8e-45
195112483	138	GI10430 [Drosophila mojavensis] gi|19391	0.900	0.920	0.731	1e-44
195449282	138	GK22551 [Drosophila willistoni] gi|19416	0.900	0.920	0.731	1e-44

>gi|332030330|gb|EGI70073.1| ATP synthase lipid-binding protein, mitochondrial [Acromyrmex echinatior]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 119/141 (84%), Gaps = 3/141 (2%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQ 60
           MY+ ++F A P A+S L+S  + T +RPLSS++ + S + QQ   QT  +S+LP VR FQ
Sbjct: 1   MYACSRFIA-PVAKSTLVSGTK-TYLRPLSSAVINHSQYLQQNQIQTP-VSLLPIVRSFQ 57

Query: 61  TSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF 120
           TS VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF
Sbjct: 58  TSTVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF 117

Query: 121 ALSEAMGLFSLMMAFLLLFAF 141
           ALSEAMGLF LMMAFLLLFAF
Sbjct: 118 ALSEAMGLFCLMMAFLLLFAF 138

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200014|gb|EFN80360.1| ATP synthase lipid-binding protein, mitochondrial [Harpegnathos saltator]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 119/141 (84%), Gaps = 3/141 (2%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQ 60
           MY+ ++F A P A+S L+S ++ T +RPLSS++ S S   Q+   QT  +S+LP VR FQ
Sbjct: 1   MYACSRFIA-PVAKSTLVSGSK-TYLRPLSSAVISHSQSLQRDQIQTP-VSLLPVVRNFQ 57

Query: 61  TSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF 120
           TS VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF
Sbjct: 58  TSTVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF 117

Query: 121 ALSEAMGLFSLMMAFLLLFAF 141
           ALSEAMGLF LMMAFLLLFAF
Sbjct: 118 ALSEAMGLFCLMMAFLLLFAF 138

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091934|ref|XP_967645.1| PREDICTED: similar to GA14517-PA [Tribolium castaneum] gi|270001304|gb|EEZ97751.1| hypothetical protein TcasGA2_TC011455 [Tribolium castaneum]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 121/142 (85%), Gaps = 3/142 (2%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQ-TTPQTQQISILPAVRQF 59
           M++ A+  A PAARSALIS++++  +RPLS++++   +  Q     Q +Q ++LPAVR F
Sbjct: 1   MFACARLIA-PAARSALISNSKVY-LRPLSTALSQNPSLVQSPVVQQHKQATLLPAVRSF 58

Query: 60  QTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILG 119
           QT+ VSRDIDSAAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILG
Sbjct: 59  QTTPVSRDIDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG 118

Query: 120 FALSEAMGLFSLMMAFLLLFAF 141
           FALSEAMGLF LMMAFLLLFAF
Sbjct: 119 FALSEAMGLFCLMMAFLLLFAF 140

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016971|ref|XP_002428968.1| ATP synthase lipid-binding protein, putative [Pediculus humanus corporis] gi|212513797|gb|EEB16230.1| ATP synthase lipid-binding protein, putative [Pediculus humanus corporis]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/139 (69%), Positives = 117/139 (84%), Gaps = 8/139 (5%)

Query: 10  SPAARSALISSARMTAMRPLSSSI-TSTSAFTQQTT------PQTQQISILPAVRQFQTS 62
           +P AR+A++  +R + +RPLSS++  S++ ++ QTT      PQT   ++LP  R+FQTS
Sbjct: 9   APCARNAMVLGSR-SYLRPLSSAVLKSSNIYSSQTTSNLITAPQTTNFNMLPINRRFQTS 67

Query: 63  AVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFAL 122
            ++RDIDSAAK+IGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFAL
Sbjct: 68  TITRDIDSAAKYIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFAL 127

Query: 123 SEAMGLFSLMMAFLLLFAF 141
           SEAMGLF LMM+FLLLFAF
Sbjct: 128 SEAMGLFCLMMSFLLLFAF 146

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853956|ref|XP_003702488.1| PREDICTED: ATP synthase lipid-binding protein, mitochondrial-like [Megachile rotundata]

 Score =  185 bits (470), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 102/141 (72%), Positives = 114/141 (80%), Gaps = 3/141 (2%)

Query: 1   MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQ 60
           MY+  +F A P ARS L+S  +   +RPLSS++ + S   QQ   Q+   S+   +R FQ
Sbjct: 1   MYACTRFIA-PLARSTLVSGTK-NYIRPLSSAVVNHSQSLQQNQIQSPA-SVSSIIRSFQ 57

Query: 61  TSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF 120
           TSA+SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF
Sbjct: 58  TSAISRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGF 117

Query: 121 ALSEAMGLFSLMMAFLLLFAF 141
           ALSEAMGLF LMMAFLLLFAF
Sbjct: 118 ALSEAMGLFCLMMAFLLLFAF 138

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181254|gb|EFN68944.1| ATP synthase lipid-binding protein, mitochondrial [Camponotus floridanus]

 Score =  185 bits (469), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/122 (80%), Positives = 104/122 (85%), Gaps = 1/122 (0%)

Query: 20  SARMTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGA 79
           S   T +RPLSS++ S S + QQ   QT  +S+ P VR FQTS VSRDIDSAAKFIGAGA
Sbjct: 14  SGTKTYLRPLSSAVISHSQYLQQNQVQTP-VSLSPIVRSFQTSTVSRDIDSAAKFIGAGA 72

Query: 80  ATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139
           ATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLF
Sbjct: 73  ATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLF 132

Query: 140 AF 141
           AF
Sbjct: 133 AF 134

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195341714|ref|XP_002037451.1| GM12097 [Drosophila sechellia] gi|194131567|gb|EDW53610.1| GM12097 [Drosophila sechellia]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 99/134 (73%), Positives = 114/134 (85%), Gaps = 7/134 (5%)

Query: 10  SPAARSALISSARMTAMRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRD 67
           +P ARSAL+++++   +RPLSS+I S S     Q TTP    +++LP +R FQTS V+RD
Sbjct: 10  APVARSALLANSKQY-LRPLSSAIISQSQTLAAQNTTP----VALLPQIRSFQTSPVTRD 64

Query: 68  IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 127
           IDSAAKFIGAGAAT+GVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG
Sbjct: 65  IDSAAKFIGAGAATIGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 124

Query: 128 LFSLMMAFLLLFAF 141
           LF LMMAFLLLFAF
Sbjct: 125 LFCLMMAFLLLFAF 138

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125772503|ref|XP_001357564.1| GA14517, isoform A [Drosophila pseudoobscura pseudoobscura] gi|194744513|ref|XP_001954738.1| GF16589 [Drosophila ananassae] gi|195062153|ref|XP_001996145.1| GH14335 [Drosophila grimshawi] gi|195159000|ref|XP_002020371.1| GL13949 [Drosophila persimilis] gi|390176756|ref|XP_003736193.1| GA14517, isoform B [Drosophila pseudoobscura pseudoobscura] gi|390176758|ref|XP_003736194.1| GA14517, isoform C [Drosophila pseudoobscura pseudoobscura] gi|390176760|ref|XP_003736195.1| GA14517, isoform D [Drosophila pseudoobscura pseudoobscura] gi|390176762|ref|XP_003736196.1| GA14517, isoform E [Drosophila pseudoobscura pseudoobscura] gi|54637296|gb|EAL26698.1| GA14517, isoform A [Drosophila pseudoobscura pseudoobscura] gi|190627775|gb|EDV43299.1| GF16589 [Drosophila ananassae] gi|193891937|gb|EDV90803.1| GH14335 [Drosophila grimshawi] gi|194117140|gb|EDW39183.1| GL13949 [Drosophila persimilis] gi|388858773|gb|EIM52266.1| GA14517, isoform B [Drosophila pseudoobscura pseudoobscura] gi|388858774|gb|EIM52267.1| GA14517, isoform C [Drosophila pseudoobscura pseudoobscura] gi|388858775|gb|EIM52268.1| GA14517, isoform D [Drosophila pseudoobscura pseudoobscura] gi|388858776|gb|EIM52269.1| GA14517, isoform E [Drosophila pseudoobscura pseudoobscura]

 Score =  184 bits (468), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 99/134 (73%), Positives = 114/134 (85%), Gaps = 7/134 (5%)

Query: 10  SPAARSALISSARMTAMRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRD 67
           +P ARSAL+++++   +RPLSS++ S S     Q TTP    +++LP +R FQTS V+RD
Sbjct: 10  APVARSALLANSKQY-LRPLSSAVISQSQTLAAQNTTP----VALLPQIRSFQTSPVTRD 64

Query: 68  IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 127
           IDSAAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG
Sbjct: 65  IDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 124

Query: 128 LFSLMMAFLLLFAF 141
           LF LMMAFLLLFAF
Sbjct: 125 LFCLMMAFLLLFAF 138

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112483|ref|XP_002000802.1| GI10430 [Drosophila mojavensis] gi|193917396|gb|EDW16263.1| GI10430 [Drosophila mojavensis]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 114/134 (85%), Gaps = 7/134 (5%)

Query: 10  SPAARSALISSARMTAMRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRD 67
           +P AR+AL+++++   +RPLSS++ S S     Q TTP    +++LP +R FQTS V+RD
Sbjct: 10  APVARTALLANSKQY-LRPLSSAVISQSQTLAAQNTTP----VALLPQIRSFQTSPVTRD 64

Query: 68  IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 127
           IDSAAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG
Sbjct: 65  IDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 124

Query: 128 LFSLMMAFLLLFAF 141
           LF LMMAFLLLFAF
Sbjct: 125 LFCLMMAFLLLFAF 138

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195449282|ref|XP_002072006.1| GK22551 [Drosophila willistoni] gi|194168091|gb|EDW82992.1| GK22551 [Drosophila willistoni]

 Score =  184 bits (466), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 114/134 (85%), Gaps = 7/134 (5%)

Query: 10  SPAARSALISSARMTAMRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRD 67
           +P ARSA++++++   +RPLSS++ S S     Q TTP    +++LP +R FQTS V+RD
Sbjct: 10  APVARSAILANSKQY-LRPLSSAVISQSQTLAAQNTTP----VALLPQIRSFQTSPVTRD 64

Query: 68  IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 127
           IDSAAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG
Sbjct: 65  IDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 124

Query: 128 LFSLMMAFLLLFAF 141
           LF LMMAFLLLFAF
Sbjct: 125 LFCLMMAFLLLFAF 138

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
FB|FBgn0039830	138	CG1746 [Drosophila melanogaste	0.510	0.521	0.625	5.3e-17
UNIPROTKB|E1BV48	141	ATP5G3 "Uncharacterized protei	0.496	0.496	0.642	6.7e-17
UNIPROTKB|F1RZI0	141	ATP5G3 "Uncharacterized protei	0.503	0.503	0.633	8.6e-17
ZFIN|ZDB-GENE-020814-1	140	atp5g3b "ATP synthase, H+ tran	0.496	0.5	0.642	1.1e-16
ZFIN|ZDB-GENE-040426-857	139	atp5g3a "ATP synthase, H+ tran	0.496	0.503	0.642	1.1e-16
UNIPROTKB|E1BQ71	136	LOC100858454 "Uncharacterized	0.482	0.5	0.647	2.3e-16
UNIPROTKB|E2RCA7	141	ATP5G3 "Uncharacterized protei	0.482	0.482	0.632	2.9e-16
UNIPROTKB|P48201	142	ATP5G3 "ATP synthase lipid-bin	0.482	0.478	0.632	2.9e-16
RGD|620052	142	Atp5g3 "ATP synthase, H+ trans	0.482	0.478	0.632	2.9e-16
UNIPROTKB|Q71S46	142	Atp5g3 "ATP synthase lipid-bin	0.482	0.478	0.632	2.9e-16

FB|FBgn0039830 CG1746 [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 45/72 (62%), Positives = 47/72 (65%)

Query:    53 LPAVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQL 112
             LP +R FQTS V+RDIDSAAKFI                      LIIGYARNPSLKQQL
Sbjct:    50 LPQIRSFQTSPVTRDIDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQL 109

Query:   113 FSYAILGFALSE 124
             FSYAILGFALSE
Sbjct:   110 FSYAILGFALSE 121

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|E1BV48 ATP5G3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 45/70 (64%), Positives = 48/70 (68%)

Query:    55 AVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFS 114
             A+R+FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLFS
Sbjct:    55 ALREFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS 114

Query:   115 YAILGFALSE 124
             YAILGFALSE
Sbjct:   115 YAILGFALSE 124

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

UNIPROTKB|F1RZI0 ATP5G3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 45/71 (63%), Positives = 47/71 (66%)

Query:    54 PAVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLF 113
             P  R+FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLF
Sbjct:    54 PIQREFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLF 113

Query:   114 SYAILGFALSE 124
             SYAILGFALSE
Sbjct:   114 SYAILGFALSE 124

GO:0005739 "mitochondrion" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-020814-1 atp5g3b "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) genome duplicate b" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/70 (64%), Positives = 47/70 (67%)

Query:    55 AVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFS 114
             AVR FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFS
Sbjct:    54 AVRGFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS 113

Query:   115 YAILGFALSE 124
             YAILGFALSE
Sbjct:   114 YAILGFALSE 123

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-857 atp5g3a "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9), genome duplicate a" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/70 (64%), Positives = 47/70 (67%)

Query:    55 AVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFS 114
             A+R FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLFS
Sbjct:    53 ALRSFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS 112

Query:   115 YAILGFALSE 124
             YAILGFALSE
Sbjct:   113 YAILGFALSE 122

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

UNIPROTKB|E1BQ71 LOC100858454 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 44/68 (64%), Positives = 46/68 (67%)

Query:    57 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 116
             R+FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    52 REFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 111

Query:   117 ILGFALSE 124
             ILGFALSE
Sbjct:   112 ILGFALSE 119

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|E2RCA7 ATP5G3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    57 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 116
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    57 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 116

Query:   117 ILGFALSE 124
             ILGFALSE
Sbjct:   117 ILGFALSE 124

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|P48201 ATP5G3 "ATP synthase lipid-binding protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    57 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 116
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117

Query:   117 ILGFALSE 124
             ILGFALSE
Sbjct:   118 ILGFALSE 125

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005215 "transporter activity" evidence=NAS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=TAS

RGD|620052 Atp5g3 "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    57 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 116
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117

Query:   117 ILGFALSE 124
             ILGFALSE
Sbjct:   118 ILGFALSE 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0007568 "aging" evidence=IEP

GO:0008289 "lipid binding" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEP

UNIPROTKB|Q71S46 Atp5g3 "ATP synthase lipid-binding protein, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    57 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 116
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117

Query:   117 ILGFALSE 124
             ILGFALSE
Sbjct:   118 ILGFALSE 125

GO:0008289 "lipid binding" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P07926	AT5G2_BOVIN	No assigned EC number	0.6413	0.9716	0.9580	yes	N/A
Q3ZC75	AT5G3_BOVIN	No assigned EC number	0.6241	0.9290	0.9290	no	N/A
Q9U505	AT5G_MANSE	No assigned EC number	0.7092	0.9290	1.0	N/A	N/A
Q06645	AT5G1_RAT	No assigned EC number	0.6935	0.8723	0.9044	no	N/A
Q06646	AT5G2_RAT	No assigned EC number	0.62	0.9219	0.9219	no	N/A
Q9CR84	AT5G1_MOUSE	No assigned EC number	0.6984	0.8723	0.9044	no	N/A
Q9BKS0	AT5G_CAEEL	No assigned EC number	0.6403	0.7659	0.9310	yes	N/A
P0C519	ATP9_ORYSJ	No assigned EC number	0.7169	0.3758	0.7162	yes	N/A
P56384	AT5G3_MOUSE	No assigned EC number	0.6458	0.9645	0.9645	yes	N/A
Q75G38	ATP9_ASHGO	No assigned EC number	0.6231	0.4893	0.9078	yes	N/A
Q06056	AT5G2_SHEEP	No assigned EC number	0.6413	0.9716	0.9580	N/A	N/A
P60112	ATP9_ARATH	No assigned EC number	0.6533	0.5319	0.8823	yes	N/A
Q0BQY6	ATPL_GRABC	No assigned EC number	0.5774	0.5035	0.9594	yes	N/A
Q5RFL2	AT5G3_PONAB	No assigned EC number	0.62	0.9290	0.9225	yes	N/A
P69421	ATP9_SOYBN	No assigned EC number	0.7307	0.3687	0.7027	yes	N/A
Q37695	ATP9_YARLI	No assigned EC number	0.6571	0.4964	0.9210	yes	N/A
P32876	AT5G1_BOVIN	No assigned EC number	0.712	0.8794	0.9117	no	N/A
P48201	AT5G3_HUMAN	No assigned EC number	0.62	0.9290	0.9225	yes	N/A
A9RAH4	ATP9_DEBHA	No assigned EC number	0.6285	0.4964	0.9210	yes	N/A
Q71S46	AT5G3_RAT	No assigned EC number	0.62	0.9290	0.9225	yes	N/A
P92811	ATP9_KLULA	No assigned EC number	0.6571	0.4964	0.9210	yes	N/A
Q85Q98	ATP9_CANGA	No assigned EC number	0.6714	0.4964	0.9210	yes	N/A
Q06055	AT5G2_HUMAN	No assigned EC number	0.6180	0.9645	0.9645	no	N/A
Q5RAP9	AT5G2_PONAB	No assigned EC number	0.625	0.9645	0.9645	no	N/A
A1XQS5	AT5G1_PIG	No assigned EC number	0.688	0.8794	0.9117	no	N/A
P05496	AT5G1_HUMAN	No assigned EC number	0.696	0.8794	0.9117	no	N/A
P17605	AT5G1_SHEEP	No assigned EC number	0.704	0.8794	0.9117	N/A	N/A
P56383	AT5G2_MOUSE	No assigned EC number	0.6026	0.9503	0.9178	no	N/A
P21537	ATP9_SCHPO	No assigned EC number	0.6428	0.4964	0.9459	yes	N/A
P61829	ATP9_YEAST	No assigned EC number	0.6376	0.4893	0.9078	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3.14	LOW CONFIDENCE prediction!
3rd Layer	3.6.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	141
MTH00222	77	MTH00222, ATP9, ATP synthase F0 subunit 9; Provisi	3e-35
PRK07558	74	PRK07558, PRK07558, F0F1 ATP synthase subunit C; V	9e-19
PRK07159	100	PRK07159, PRK07159, F0F1 ATP synthase subunit C; V	2e-10
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	4e-09
COG0636	79	COG0636, AtpE, F0F1-type ATP synthase, subunit c/A	3e-08
PRK13469	79	PRK13469, PRK13469, F0F1 ATP synthase subunit C; P	4e-08
PRK13471	85	PRK13471, PRK13471, F0F1 ATP synthase subunit C; P	8e-06
PRK07874	80	PRK07874, PRK07874, F0F1 ATP synthase subunit C; V	1e-05
CHL00061	81	CHL00061, atpH, ATP synthase CF0 C subunit	0.003
TIGR01260	58	TIGR01260, ATP_synt_c, ATP synthase, F0 subunit c	0.003

>gnl|CDD|164765 MTH00222, ATP9, ATP synthase F0 subunit 9; Provisional

 Score =  116 bits (293), Expect = 3e-35
 Identities = 62/75 (82%), Positives = 71/75 (94%)

Query: 67  DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 126
           +I +AAKF+GAGAAT+G AGSGAGIG+VFG+LIIGYARNPSLKQQLF+YAILGFA+SEAM
Sbjct: 3   EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAM 62

Query: 127 GLFSLMMAFLLLFAF 141
           GLF LMMAFL+LFA 
Sbjct: 63  GLFCLMMAFLILFAL 77

Length = 77

>gnl|CDD|181027 PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated

 Score = 74.6 bits (184), Expect = 9e-19
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query: 71  AAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 130
           A KFIGAG A +G+AG+  G+G++FG+ + G  RNPS     F Y ++G AL+EA+G+FS
Sbjct: 5   ALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFS 64

Query: 131 LMMAFLLLFA 140
            ++A LLLFA
Sbjct: 65  FLIALLLLFA 74

Length = 74

>gnl|CDD|235949 PRK07159, PRK07159, F0F1 ATP synthase subunit C; Validated

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 33  ITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIG 92
           + S   F  Q    TQ +              +      A +IGAG A +GV G G G G
Sbjct: 1   VNSIVNFVGQILQNTQTV---------SQKVAADSSGLKAAYIGAGLAMIGVIGVGLGQG 51

Query: 93  SVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 139
             FG  +   ARNP  ++Q+F    +G A+SE   +++L++AF+L+F
Sbjct: 52  YAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIF 98

Length = 100

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 49.4 bits (119), Expect = 4e-09
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 72  AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 130
              +GAG A  +   G+G GIG    + I   ARNP L    F   ++G AL+EA+ ++ 
Sbjct: 1   LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPEL----FGKMLIGAALAEALAIYG 56

Query: 131 LMMAFLLLFA 140
           L++A LLLFA
Sbjct: 57  LVIALLLLFA 66

Length = 66

>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 70  SAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGL 128
                IGAG A  +   G+G G G +  + +   AR P    +LF    +G AL EA+G+
Sbjct: 6   KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGI 65

Query: 129 FSLMMAFLLLFAF 141
           + L++A LLLFA 
Sbjct: 66  YGLVIALLLLFAN 78

Length = 79

>gnl|CDD|184068 PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional

 Score = 47.3 bits (113), Expect = 4e-08
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 65  SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSE 124
            +        IGAG A +   G+G GIG   G  +    R P    ++ S  +LG AL+E
Sbjct: 3   GKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAE 62

Query: 125 AMGLFSLMMAFLLLFA 140
           A  ++ L++A +LLF 
Sbjct: 63  ATAIYGLVIAIILLFV 78

Length = 79

>gnl|CDD|184069 PRK13471, PRK13471, F0F1 ATP synthase subunit C; Provisional

 Score = 41.4 bits (97), Expect = 8e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 71  AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 129
             K+IGAG    +G  G G G G++    +   AR P +   + +  +L  A++E  G++
Sbjct: 14  LGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIY 73

Query: 130 SLMMAFLLLFA 140
           SL++AFL+L  
Sbjct: 74  SLLIAFLILLV 84

Length = 85

>gnl|CDD|169138 PRK07874, PRK07874, F0F1 ATP synthase subunit C; Validated

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 69  DSAAKFIGAGAATVGVA--GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 126
            +   F G GA   G+A  G G G+G V G  + G AR P +  QL +   LG A  EA+
Sbjct: 10  ATETTFTGLGAVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEAL 69

Query: 127 GLFSLMMAFLL 137
            L  L+  FL 
Sbjct: 70  ALIGLVAGFLF 80

Length = 80

>gnl|CDD|177001 CHL00061, atpH, ATP synthase CF0 C subunit

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 68  IDSAAKFIGAGAATVGVAGSGAGIG--SVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
           + SAA  I AG A VG+A  G G+G  +  G  + G AR P  + ++    +L  A  EA
Sbjct: 4   LISAASVIAAGLA-VGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEA 62

Query: 126 MGLFSLMMAFLLLFA 140
           + ++ L++A  LLFA
Sbjct: 63  LTIYGLVVALALLFA 77

Length = 81

>gnl|CDD|130327 TIGR01260, ATP_synt_c, ATP synthase, F0 subunit c

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 86  GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 140
           G+  GIG + G  +   AR P LK  L +   +G  L +A+ + ++++A +LLFA
Sbjct: 4   GAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis [Energy metabolism, ATP-proton motive force interconversion]. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
KOG3025|consensus	137		100.0
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.91
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.89
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.88
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.87
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.87
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.86
CHL00061	81	atpH ATP synthase CF0 C subunit	99.85
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.85
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.85
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.84
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.84
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.84
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.83
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.83
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.83
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.81
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.79
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.79
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.65
PRK06251	102	V-type ATP synthase subunit K; Validated	99.63
PRK08344	157	V-type ATP synthase subunit K; Validated	99.5
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.47
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.46
PRK06271	213	V-type ATP synthase subunit K; Validated	99.45
PRK06558	159	V-type ATP synthase subunit K; Validated	99.4
PRK06271	213	V-type ATP synthase subunit K; Validated	99.35
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.3
PRK06558	159	V-type ATP synthase subunit K; Validated	99.16
PRK08344	157	V-type ATP synthase subunit K; Validated	99.03
PRK06649	143	V-type ATP synthase subunit K; Validated	98.85
PRK09621	141	V-type ATP synthase subunit K; Provisional	98.51
KOG0232|consensus	156		98.42
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	98.02
PRK06649	143	V-type ATP synthase subunit K; Validated	97.41
KOG0233|consensus	196		96.2
KOG0233|consensus	196		95.83

>KOG3025|consensus

Probab=100.00  E-value=1.1e-40  Score=252.78  Aligned_cols=136  Identities=65%  Similarity=0.934  Sum_probs=122.9

Q ss_pred             CcchhhhhhCchhhhhhhhcccccccccchhhhhcCccccc-cCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy3711           1 MYSLAKFAASPAARSALISSARMTAMRPLSSSITSTSAFTQ-QTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGA   79 (141)
Q Consensus         1 m~~~~~~~~~p~~r~~~~~~s~~~~~~p~s~~~~~~~~~~~-~~~~~~~~~~~~~~~r~fqts~~~~~i~~a~~~igaGl   79 (141)
                      ||+|.|+..+|   +++++++ +...||+| ...++||... .+.+..++...++..|+||||++++|||+++|+||+|+
T Consensus         1 M~~~~k~~~~P---~~v~~~~-~~~~~~ls-~~~~~~e~~~~~~~~~~s~~~~~~~~RsFQTS~is~~i~~aak~igag~   75 (137)
T KOG3025|consen    1 MFTCLKSTITP---SLVSAGS-RAAWRPLS-YSSSRPENVRTLQASSLSNIAQLVEPRSFQTSVISRDIDTAAKFIGAGA   75 (137)
T ss_pred             CchhhhhccCc---HHHHHHh-hhhhhhhh-hhhcccchhhhhhhcccccccccccccceehhhhHHHHHHHHHHhccch
Confidence            89999999888   8889999 99999999 7778887543 33334444445577899999999999999999999999


Q ss_pred             HHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711          80 ATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  141 (141)
Q Consensus        80 A~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~  141 (141)
                      +++|+.|+|+|||+||+++|+|++|||++|+|+|+|+||||+|.|++++||||++|+++|+|
T Consensus        76 atvgv~gsg~gig~vf~~li~g~arnpslk~~lfs~ailgfalsea~glfclm~aflilfa~  137 (137)
T KOG3025|consen   76 ATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM  137 (137)
T ss_pred             hhhccccccchHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999986

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.91  E-value=3.8e-24  Score=150.94  Aligned_cols=76  Identities=82%  Similarity=1.293  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711          66 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  141 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~  141 (141)
                      .|+.++++++|+|++++|.+|+|+|+|+++++++|+++||||+++++++++++|++|+|+++||+++++|+++|++
T Consensus         2 ~~~~~~~~~igaGla~iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa~   77 (77)
T MTH00222          2 TEILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFAL   77 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4788899999999999999999999999999999999999999999999999999999999999999999999974

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.89  E-value=4.3e-23  Score=144.51  Aligned_cols=72  Identities=50%  Similarity=0.922  Sum_probs=69.4

Q ss_pred             HHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          69 DSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        69 ~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ..+.+++|+|+++++.+|+|+|+|.++++++|+++||||+++++++++++|++|+|+++||+++++++++|+
T Consensus         3 ~~~~~~igagla~laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa   74 (74)
T PRK07558          3 AEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA   74 (74)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999999999999999999999999999999999999999995

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.88  E-value=1.4e-22  Score=143.21  Aligned_cols=74  Identities=30%  Similarity=0.461  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      |+..+.+++|+|+++ ++.+|+|+|+|.++++++++++||||+++++++++++|++|+|+++||+|+++++++|+
T Consensus         2 ~~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~   76 (78)
T PRK06876          2 ELIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA   76 (78)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567788999999999 99999999999999999999999999999999999999999999999999999999996

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.87  E-value=1.1e-21  Score=140.71  Aligned_cols=76  Identities=30%  Similarity=0.573  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711          66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  141 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~  141 (141)
                      .++..+.+++|+|+++ ++.+|+|+|+|+++++++++++||||++++++++++++++|+|+++||+++++|+++|++
T Consensus         9 ~~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~~   85 (85)
T PRK13471          9 QALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLVL   85 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3567889999999998 999999999999999999999999999999999999999999999999999999999974

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.87  E-value=1.3e-21  Score=138.05  Aligned_cols=76  Identities=33%  Similarity=0.564  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          65 SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        65 ~~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      +++++.+++++|+|+++++.+|+|+|+|.++++++++++||||+++|++++++++++|.|+++||+++++++++|+
T Consensus         3 ~~~~~~~~~~igagla~laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~   78 (79)
T PRK13469          3 GKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV   78 (79)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567889999999999999999999999999999999999999999999999999999999999999999999996

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.86  E-value=2.4e-21  Score=143.55  Aligned_cols=75  Identities=28%  Similarity=0.517  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+++.+++++|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++++||++|+|+++||+++++|+++|+
T Consensus        25 ~~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~  100 (105)
T PRK08482         25 MDMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA  100 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567888999999999 99999999999999999999999999999999999999999999999999999999996

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.85  E-value=5.5e-21  Score=135.79  Aligned_cols=73  Identities=36%  Similarity=0.579  Sum_probs=70.1

Q ss_pred             HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      +..+++++|+|+++ ++.+|+|+|+|.++++++++++||||++++++++++++++|+|+++||+++++++++|+
T Consensus         4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~   77 (81)
T CHL00061          4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55667999999999 99999999999999999999999999999999999999999999999999999999996

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.85  E-value=7.2e-21  Score=140.08  Aligned_cols=69  Identities=42%  Similarity=0.799  Sum_probs=67.4

Q ss_pred             HHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          72 AKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        72 ~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ++++|+|+++++.+|+|+|+|.++++++|++|||||+++++++++++|++++|+++||+++++++++|+
T Consensus        31 ~~~igaGLa~laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         31 AAYIGAGLAMIGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999999999999999999999999996

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.85  E-value=9.7e-21  Score=139.67  Aligned_cols=71  Identities=24%  Similarity=0.418  Sum_probs=68.4

Q ss_pred             HHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          70 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        70 ~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+.+.+++|+++ ++.+|+|+|+|+++++++|+++||||+++++++++|+|++|+|+++||+++++++++|+
T Consensus        12 ~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa   83 (101)
T PRK13464         12 NGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA   83 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467999999988 99999999999999999999999999999999999999999999999999999999996

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.84  E-value=1.2e-20  Score=135.41  Aligned_cols=75  Identities=21%  Similarity=0.460  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .++..+.+++|+|+++ ++.+|+|+|+|.++++++|+++||||.+++++++|++|++|+|+++||+++++++++|+
T Consensus         3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~   78 (86)
T TIGR03322         3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA   78 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457788999999998 99999999999999999999999999999999999999999999999999999999986

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.84  E-value=1.2e-20  Score=134.25  Aligned_cols=73  Identities=25%  Similarity=0.474  Sum_probs=70.4

Q ss_pred             HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      +..+++++|+|+++ ++.+|+|+|+|.++++++|+++||||++++++++++++++|+|+++||+++++++++|+
T Consensus         4 ~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa   77 (82)
T PRK13468          4 LIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA   77 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46778999999998 99999999999999999999999999999999999999999999999999999999997

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.84  E-value=1.4e-20  Score=133.95  Aligned_cols=72  Identities=33%  Similarity=0.481  Sum_probs=67.3

Q ss_pred             HHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          69 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        69 ~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      +.+++++|+|+++ +|.+|+|+|+|+++++++|+++||||++++++++||||++|+|++.+|++++.++++|+
T Consensus         5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~   77 (81)
T PRK05880          5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567999999988 89999999999999999999999999999999999999999999999988888888775

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.83  E-value=3.7e-20  Score=131.19  Aligned_cols=73  Identities=33%  Similarity=0.576  Sum_probs=70.0

Q ss_pred             HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      +..+++++|+|+++ ++.+|+|+|+|.++++++++++||||++++++++++++++|+|+++||+++++++++|+
T Consensus         4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~   77 (81)
T PRK07354          4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45667999999998 99999999999999999999999999999999999999999999999999999999996

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.83  E-value=1.6e-20  Score=126.07  Aligned_cols=57  Identities=33%  Similarity=0.605  Sum_probs=55.4

Q ss_pred             hhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          84 VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        84 ~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+|+|+|+|+++++++++++||||++++++++++||++|+|+++||+++++++++|+
T Consensus         2 a~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa   58 (58)
T TIGR01260         2 AIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA   58 (58)
T ss_pred             cchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            579999999999999999999999999999999999999999999999999999995

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.83  E-value=3.4e-20  Score=131.80  Aligned_cols=68  Identities=35%  Similarity=0.575  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711          66 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFL  136 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~l  136 (141)
                      .|+..+.+++|+|+++   +|+|+|+|+++++++|+++||||+++++++++|||++|+|+++||+++++|+
T Consensus        12 ~~~~~~~~~ig~Glaa---iGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         12 ETTFTGLGAVGYGLAA---IGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6778899999999876   6899999999999999999999999999999999999999999999999997

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.81  E-value=8e-20  Score=125.79  Aligned_cols=63  Identities=32%  Similarity=0.452  Sum_probs=59.1

Q ss_pred             HHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711          72 AKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  137 (141)
Q Consensus        72 ~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll  137 (141)
                      ..+||+|+++   +|+|+|+|+++++++|++|||||++++++++||+|++|+|+++||+++++|++
T Consensus         3 ~~~i~~Glaa---iGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          3 LTILALALAC---MGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678888776   58999999999999999999999999999999999999999999999999986

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.79  E-value=6.7e-19  Score=124.17  Aligned_cols=71  Identities=38%  Similarity=0.670  Sum_probs=68.7

Q ss_pred             HHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          70 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        70 ~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ++..++++|+++ ++.+|+|+|+|++++++++++|||||+++++|+.++++++|+|+++||+|+++|+++|+
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~   77 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFA   77 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567899999999 99999999999999999999999999999999999999999999999999999999986

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.79  E-value=3.8e-19  Score=122.33  Aligned_cols=56  Identities=29%  Similarity=0.479  Sum_probs=53.6

Q ss_pred             HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711          82 VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  137 (141)
Q Consensus        82 lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll  137 (141)
                      ++.+|+|+|+|+++++++|+++||||+++++++++|+|++|+|+++||+++++|++
T Consensus        10 laa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466         10 LACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999999999999999999999985

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.65  E-value=1.1e-15  Score=103.32  Aligned_cols=65  Identities=38%  Similarity=0.661  Sum_probs=61.9

Q ss_pred             HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ++++|+|+++ ++.+|+|+|+|.++++++++++||||    +|++++++.+++|+++||+++++++++|+
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~----~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPE----LFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG----HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            4789999999 99999999999999999999999998    88999999999999999999999999985

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.63  E-value=1.8e-15  Score=111.79  Aligned_cols=71  Identities=23%  Similarity=0.352  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ++...+.+++|+|+++ ++.+|+|+|+|.++++.+++++||||+.+    +++++++|+|+++||+++++|+++|+
T Consensus        29 ~~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g----~~ii~~al~Ea~aIyglvVa~lLlf~  100 (102)
T PRK06251         29 TAQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFG----TVLIFVAIGEGIAVYGILFAVLMLFG  100 (102)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455678999999998 89999999999999999999999998655    67999999999999999999999986

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.50  E-value=1.7e-13  Score=107.45  Aligned_cols=71  Identities=30%  Similarity=0.369  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      .++.++++++++|+++ ++.+++|+|+|.++++.+++++|||   +++|++++++++|+|+++||+++++++++.
T Consensus        83 ~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P---~~l~~~~ii~~a~~Ea~ai~~lvvallll~  154 (157)
T PRK08344         83 INLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTP---GKTFTQTIILAAYAELMGIFGLVFAILGLS  154 (157)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999998 9999999999999999999999999   689999999999999999999999999875

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.47  E-value=3e-13  Score=106.51  Aligned_cols=70  Identities=29%  Similarity=0.409  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ...++.+++|+|+++ ++.+|+|+|+|.++++.+++++||||..+    +++++.++.|+++||+|+++|+++|.
T Consensus        86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~----~~li~~al~Et~~Iyglvv~~lll~~  156 (161)
T PRK14893         86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFA----RGIIFSALPETQAIYGFLIAILLMVF  156 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999 99999999999999999999999998655    58999999999999999999999885

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.46  E-value=4.3e-13  Score=105.59  Aligned_cols=67  Identities=30%  Similarity=0.410  Sum_probs=62.5

Q ss_pred             HHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          69 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        69 ~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      ..+++++|+|+++ ++.+|+|+|+|+++++++++++||||..    .++++++++.|+++||+++++++++|
T Consensus         7 ~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~----~~~li~~al~Ea~aIyglvia~lll~   74 (161)
T PRK14893          7 GTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMF----ARGIIFSALPETQAIYGFLIAILLLV   74 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999 9999999999999999999999999874    56899999999999999999999988

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.45  E-value=3.2e-13  Score=110.18  Aligned_cols=68  Identities=25%  Similarity=0.354  Sum_probs=62.3

Q ss_pred             HHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          68 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        68 i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ..++++++++|+++ ++.. +|+|+|.++++.+++++||||+.+|+    +++++++|+++||+++++++++|+
T Consensus       142 ~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~~----~i~~a~~Ea~~i~~lvvalil~f~  210 (213)
T PRK06271        142 GVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGKG----LVLAVMPETFAIFGLLIAILIMLG  210 (213)
T ss_pred             hhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34689999999998 6666 99999999999999999999988875    899999999999999999999986

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.40  E-value=1.6e-12  Score=102.06  Aligned_cols=71  Identities=20%  Similarity=0.196  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .++.++..++++|+++ ++.+++|+++|.+.++.+++++||||+.+    ++++..+|+|+++||+|+++++++|.
T Consensus        86 ~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~----~~li~~~~~E~~aI~glvvaill~~~  157 (159)
T PRK06558         86 LSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFT----KGIILAAMVETYAILAFVVSFLLLNG  157 (159)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3567789999999999 99999999999999999999999997654    68999999999999999999999875

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.35  E-value=2.8e-12  Score=104.65  Aligned_cols=63  Identities=37%  Similarity=0.454  Sum_probs=58.2

Q ss_pred             HHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          74 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        74 ~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+|+|+++ ++.+|+|+|+|+++++++++++||||..++    ++++.++.|+++||+++++++++|.
T Consensus         2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~~----~li~~al~e~~~Iyglvia~ll~~~   65 (213)
T PRK06271          2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFGT----AIVFQALPQTQGLYGFLVAILILFV   65 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            47888988 889999999999999999999999987664    7999999999999999999999985

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.30  E-value=1.1e-11  Score=95.85  Aligned_cols=65  Identities=26%  Similarity=0.360  Sum_probs=58.8

Q ss_pred             HHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711          69 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  137 (141)
Q Consensus        69 ~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll  137 (141)
                      ..+...+++|+.+ ++..++|+|+|.+.++.+++++||||..++    ++++.+++|+.+||++++++++
T Consensus        75 ~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~k----~~i~~alvE~~ai~~lv~a~ll  140 (141)
T PRK09621         75 LSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYGK----SFAAIGIVESFALFAFVFALLL  140 (141)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence            4567788999988 888999999999999999999999986555    7899999999999999999986

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.16  E-value=1.6e-10  Score=90.93  Aligned_cols=67  Identities=19%  Similarity=0.260  Sum_probs=61.2

Q ss_pred             HHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          70 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        70 ~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ....++|+++++ ++.+|+++|+|.++.+.+++++||||..+|.    ++..++.|+++||+++++++++|.
T Consensus        14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k~----lI~~~l~e~~aIyGlvva~li~~~   81 (159)
T PRK06558         14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGKA----LILQLLPGTQGLYGFVIGFLIWQK   81 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357889999988 8899999999999999999999999877765    799999999999999999999874

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.03  E-value=1.2e-09  Score=85.80  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=57.8

Q ss_pred             HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711          72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL  138 (141)
Q Consensus        72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lll  138 (141)
                      +..+|+++++ ++.+|+++|+|..+.+.+++++||||    ++.++++..++.|+.+||+++++|+++
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~----~~~~~li~~a~~~t~~IYGlvi~~~i~   65 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEK----NFRNALILAGLPMTQTIYGLITLFLIL   65 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4678999998 88999999999999999999999998    677789999999999999999997764

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=98.85  E-value=2e-08  Score=78.33  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          65 SRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        65 ~~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      ..++.++..++++|+.+ ++...+|+.||.+..+.+++++|||    ++|..+++..+|+|+.+||++++++++.+
T Consensus        72 ~~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p----~~f~~~ii~~~~~Et~Al~~lv~s~~~~~  143 (143)
T PRK06649         72 VMSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETG----KGFANYLLVLGLIETVALFVMVFLMIFKF  143 (143)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34566788999999998 7778899999999999999999999    47888999999999999999999998753

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=98.51  E-value=6.5e-07  Score=69.42  Aligned_cols=64  Identities=19%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      ..++|+++++ ++.+|+++|++..+.+.+....|+||..++    .++--++.|+.+||+++++++++.
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~----~~i~~~lP~tq~IYG~ii~~li~~   68 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGK----IIGLSAMPSSQSIYGLILMLLLND   68 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhh----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4568899988 888999999999999999999999987766    456666999999999999999874

>KOG0232|consensus

Probab=98.42  E-value=2.4e-07  Score=73.21  Aligned_cols=70  Identities=30%  Similarity=0.434  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+.+++..+++|+.+ +..+++|..+|++....+.+.+|||    ++|..++|-+.|.|.+++|+|++++++.+.
T Consensus        83 ~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQP----r~fv~~iLiLif~evlGLygLiva~~l~~~  153 (156)
T KOG0232|consen   83 SLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQP----RLFVGMILILIFAEVLGLYGLIVALALLTV  153 (156)
T ss_pred             chhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCc----hhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            455677889999998 7778899999999999999999999    688899999999999999999999998763

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=98.02  E-value=3.1e-05  Score=57.92  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             HHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          73 KFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        73 ~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      .++|+++++ +..+|++.|+++.+.+....=.+.||    +|.+.++-.+|.|+.+||++++++++..
T Consensus         3 ~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~----~~~k~lI~vi~~g~~gIYGlIia~ii~~   66 (108)
T TIGR01100         3 GVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPE----LIMKSIIPVVMAGIIAIYGLVVAVLIAG   66 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            467888888 88899999999988555554455586    5666789999999999999999999874

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=97.41  E-value=0.00065  Score=53.17  Aligned_cols=63  Identities=25%  Similarity=0.334  Sum_probs=52.8

Q ss_pred             HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhc-----CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYAR-----NPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giAR-----qPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      ..++|+++++ ++.+|+++|.|+.+...+..+.+     +||.    |. .++-.++.-+.+||+++++++++.
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~----f~-~lvl~~lP~TqgiYG~vi~~~i~~   71 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAP----FL-LIVFVGAPLTQTIYGYILMNTLLG   71 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchH----HH-HHHHHhchhHHHHHHHHHHHHHHh
Confidence            4578888888 88999999999999988888887     8874    33 667777888899999999999874

>KOG0233|consensus

Probab=96.20  E-value=0.00056  Score=55.68  Aligned_cols=63  Identities=24%  Similarity=0.371  Sum_probs=55.9

Q ss_pred             HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711          72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL  138 (141)
Q Consensus        72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lll  138 (141)
                      ...+|.++++ +.+.|++.|+=+.+.+.+.+=-|-|    ++.+.-+++..|.|+.+|||+++++++.
T Consensus        42 wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAP----RI~TKnLisIIfCEavaiyglI~Aivls  105 (196)
T KOG0233|consen   42 WASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAP----RIKTKNLISIIFCEAVAIYGLIMAIVLS  105 (196)
T ss_pred             HHHhhHHHhhhhhhhhhheeEEEecceeecCcccCC----cccccceEEEEeehHHHHHHHHHHHHHH
Confidence            4667888888 8899999999999999999999999    5677789999999999999999999875

>KOG0233|consensus

Probab=95.83  E-value=0.011  Score=48.24  Aligned_cols=70  Identities=21%  Similarity=0.386  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3711          64 VSRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  137 (141)
Q Consensus        64 ~~~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~ll  137 (141)
                      ..+++..+....++|+.+ +.-.-+|+..|++++.+--+=|.||.    ||.+.++--.|-.+++||++++++++
T Consensus       118 ~~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~t----LFvKilivEIfgSaiGLfGlIvgi~m  188 (196)
T KOG0233|consen  118 GAQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANPT----LFVKILIVEIFGSAIGLFGLIVGIVM  188 (196)
T ss_pred             ccchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCcc----ceeeeehhhhHHHHHHHHHHHHHhhc
Confidence            346677888999999997 55567999999999999999999995    66667777788889999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
2xnd_J	72	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		1e-11

>pdb|2XND|J Chain J, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 72

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 35/57 (61%)
Query: 68  IDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYAILGFALSE 124
           ID+AAKFI                      LIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 1   IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	2e-28
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	5e-26
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	2e-20
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	6e-09
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	1e-06
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	6e-06
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	6e-04

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus} Length = 72

 Score = 98.6 bits (246), Expect = 2e-28
 Identities = 67/72 (93%), Positives = 71/72 (98%)

Query: 68  IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 127
           ID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG
Sbjct: 1   IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 60

Query: 128 LFSLMMAFLLLF 139
           LF LM+AFL+LF
Sbjct: 61  LFCLMVAFLILF 72

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K* Length = 76

 Score = 92.5 bits (230), Expect = 5e-26
 Identities = 44/74 (59%), Positives = 56/74 (75%)

Query: 67  DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 126
            +  AAK+IGAG +T+G+ G+G GI  VF +LI G +RNPS+K  +F  AILGFALSEA 
Sbjct: 2   QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEAT 61

Query: 127 GLFSLMMAFLLLFA 140
           GLF LM++FLLLF 
Sbjct: 62  GLFCLMVSFLLLFG 75

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A* Length = 89

 Score = 78.6 bits (194), Expect = 2e-20
 Identities = 27/76 (35%), Positives = 44/76 (57%)

Query: 65  SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSE 124
           ++ +  AA  +GAG A +   G G G G   G  +   AR P  K  + S  +LG A++E
Sbjct: 6   AKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAE 65

Query: 125 AMGLFSLMMAFLLLFA 140
           + G++SL++A +LL+A
Sbjct: 66  STGIYSLVIALILLYA 81

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A Length = 82

 Score = 48.9 bits (117), Expect = 6e-09
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 67  DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
           ++ +AA  I A  A  +G  G G G G   G  + G AR P  + ++    +L  A  EA
Sbjct: 4   NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEA 63

Query: 126 MGLFSLMMAFLLLFA 140
           + ++ L++A +LLFA
Sbjct: 64  LTIYGLVVALVLLFA 78

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP} Length = 72

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 71  AAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 129
           +   + A  A  +G  G+G G G +    I G AR P L+  L +   +G AL EA+ + 
Sbjct: 2   SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPII 61

Query: 130 SLMMAFLLLF 139
            ++ +F+ L 
Sbjct: 62  GVVFSFIYLG 71

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4} Length = 69

 Score = 40.5 bits (95), Expect = 6e-06
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 73  KFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSL 131
            F+GA  AA +        +  +  + I G  R P L+  L +   +G  L+EA+ + ++
Sbjct: 2   AFLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAI 61

Query: 132 MMAFLLLF 139
           +++ L+LF
Sbjct: 62  VISLLILF 69

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A Length = 79

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 67  DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
           +++    ++ A     +   G+  GIG + G  + G AR P L   L +   +   L +A
Sbjct: 3   NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62

Query: 126 MGLFSLMMAFLLLFAF 141
           + + ++ +   ++FA 
Sbjct: 63  IPMIAVGLGLYVMFAV 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.95
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.88
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.86
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.84
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.84
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.84
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.84
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.63
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.09

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.95  E-value=9.9e-29  Score=173.06  Aligned_cols=76  Identities=58%  Similarity=0.951  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3711          66 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  141 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa~  141 (141)
                      +|++.++|+||+|++++|++|+|+|+|++|++++++++||||+++|+|+|++||++++|+++||||+++|+++|++
T Consensus         1 M~lv~aak~IGaGlA~ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFav   76 (76)
T 4f4s_A            1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV   76 (76)
T ss_dssp             CHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ChHHHHHHHHHHHHHHHHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3788999999999999999999999999999999999999999999999999999999999999999999999985

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.88  E-value=2.2e-22  Score=143.57  Aligned_cols=77  Identities=35%  Similarity=0.607  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          64 VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        64 ~~~~i~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+++++++++++|+|+++++.+|+|+|+|.++++++++++||||+++++|++++++++|+|+++||+++++|+++|+
T Consensus         5 ~~~~~~~~~~~igaGla~la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   81 (89)
T 2wgm_A            5 FAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA   81 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55788999999999999989999999999999999999999999999999999999999999999999999999986

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.86  E-value=1.5e-21  Score=137.24  Aligned_cols=74  Identities=34%  Similarity=0.602  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          67 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        67 ~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ++.++++++|+|+++ ++.+|+|+|+|+++++++++++||||+++++|++++++++|+|+++||+++++|+++|+
T Consensus         4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~   78 (82)
T 2xqu_A            4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA   78 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467889999999999 99999999999999999999999999999999999999999999999999999999986

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.84  E-value=3.9e-21  Score=132.31  Aligned_cols=69  Identities=30%  Similarity=0.514  Sum_probs=66.5

Q ss_pred             HHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          72 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        72 ~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      ++++|+|+++ ++.+|+|+|+|+++++++++++||||.++|+|++++++++|+|+++||+++++|+++|+
T Consensus         3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~   72 (72)
T 1wu0_A            3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR   72 (72)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5789999998 89999999999999999999999999999999999999999999999999999999985

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.84  E-value=1.3e-20  Score=131.83  Aligned_cols=67  Identities=24%  Similarity=0.461  Sum_probs=60.0

Q ss_pred             HHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          74 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        74 ~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+++++++ ++.+|+|+|+|+++++++++++||||+++++|++++++++|+|+++||+++++|+++|+
T Consensus        10 ~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   77 (79)
T 1a91_A           10 YMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444 44578999999999999999999999999999999999999999999999999999996

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.84  E-value=8.2e-21  Score=129.74  Aligned_cols=66  Identities=26%  Similarity=0.562  Sum_probs=63.9

Q ss_pred             HHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          74 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        74 ~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      ++|+|+++ ++.+|+|+|+|+++++++++++||||+++|+|++++++++|+|+++||+++++|+++|
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   69 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            58899998 8889999999999999999999999999999999999999999999999999999987

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.84  E-value=1.3e-22  Score=139.86  Aligned_cols=71  Identities=93%  Similarity=1.397  Sum_probs=67.6

Q ss_pred             HHHHHHHhHHHHHHhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3711          69 DSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  139 (141)
Q Consensus        69 ~~a~~~igaGlA~lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllF  139 (141)
                      +++++++|+|+++++.+|+|+|+|+++++++++++||||+++++|++++++++|+|+++||+++++|+++|
T Consensus         2 ~~~~~~igaGLa~l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf   72 (72)
T 2xnd_J            2 DTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF   72 (72)
T ss_dssp             TTTTTTTTTTGGGGGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34678999999998899999999999999999999999999999999999999999999999999999886

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.63  E-value=6.4e-16  Score=119.68  Aligned_cols=71  Identities=23%  Similarity=0.320  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          66 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        66 ~~i~~a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .++.++++++|+|+++ ++.+|+|+|+|+++++++++++||||++++    ++++++|+|+++||+++++++++|+
T Consensus        84 ~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~----~ii~~a~~Ea~ai~glvia~ll~~~  155 (156)
T 2bl2_A           84 MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATK----GIIFAAMVETYAILGFVISFLLVLN  155 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH----HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3567899999999999 899999999999999999999999998776    7899999999999999999999985

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.09  E-value=3e-10  Score=87.86  Aligned_cols=66  Identities=23%  Similarity=0.349  Sum_probs=61.3

Q ss_pred             HHHHHhHHHHH-HhhhhhHHhhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3711          71 AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  140 (141)
Q Consensus        71 a~~~igaGlA~-lg~~GaGiGiG~v~~s~i~giARqPe~~g~Lfs~~iLg~Al~Eal~Lf~LvvA~lllFa  140 (141)
                      .+.++|+++++ ++.+|+++|+|.++.+.+++.+||||.    +.++++..+|.|+++||+|++++++++.
T Consensus        13 ~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~~----~~k~li~~~l~e~~~IYGlvva~li~~~   79 (156)
T 2bl2_A           13 VFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPEK----FGQALILQLLPGTQGLYGFVIAFLIFIN   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            57899999999 999999999999999999999999975    4678999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d1c99a_	79	f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escheri	4e-13

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

 Score = 58.4 bits (142), Expect = 4e-13
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 67  DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 125
           +++    ++ A     +   G+  GIG + G  + G AR P L   L +   +   L +A
Sbjct: 3   NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62

Query: 126 MGLFSLMMAFLLLFAF 141
           + + ++ +   ++FA 
Sbjct: 63  IPMIAVGLGLYVMFAV 78