Psyllid ID: psy3716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430------
Protein Sequence
MSTIVDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETVATEVL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHccccHHHHHcccccHHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEcccccHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEcHHHHHHHccccHHHHHHHHHHHHHHccccEEEcccccEEEEEEEcccEccHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHccccEEEccccEEEEEEEEcccEccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MSTIVDPTVYLTAKqeaysknpeisAQWLNLEELYNKKLWHQLTLAVLAFVqnpaiqkegelRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMnkdadkpgslDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYlgcvdlndltasdQVQHAFLIGLAALLADSVYNIGEllahpildslqqtPNAWLVELLRAFnagdiekfelmrpqwsamNDIKANENKLSQKIALLCLMELAFkkipgshqlsfAEISEAAQLPLIEVEFLIIKALALGLvkghidqvdesfnvtwvqprvlskdqlafkkipgshqlsfAEISEAAQLPLIEVEFLIIKALALGLvkghidqvdesfnvtwvqprvlskdQVFWSLEETVATEVL
Flexible Loop (DISEMBL)
mstivdptvyltakqeaysknpEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETVATEVL
Low Complexity Region (SEG)
MSTIVDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETVATEVL
Disordered region (IsUnstruct)
*******TVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMN********LDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEET******
Disordered Region (DISOPRED)
****VDP*V******************WLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDK*KNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVL************SHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETVATEV*
Disordered Region (DISEMBL)
MSTIVDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETVATEVL
Disordered Region (DISPRO)
***IVDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETVA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTIVDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSxxxxxxxxxxxxxxxxxxxxxTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETVATEVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	436	2.2.26 [Sep-21-2011]
P84169	376	26S proteasome non-ATPase	yes	N/A	0.779	0.904	0.451	5e-81
B0BN93	376	26S proteasome non-ATPase	yes	N/A	0.775	0.898	0.440	5e-80
Q9UNM6	376	26S proteasome non-ATPase	yes	N/A	0.779	0.904	0.440	6e-80
Q5E964	376	26S proteasome non-ATPase	yes	N/A	0.779	0.904	0.443	1e-79
Q9WVJ2	376	26S proteasome non-ATPase	yes	N/A	0.775	0.898	0.437	8e-79
Q54NQ0	385	26S proteasome non-ATPase	yes	N/A	0.807	0.914	0.341	1e-54
Q9US13	381	Probable 26S proteasome r	yes	N/A	0.75	0.858	0.341	2e-43
Q04062	393	26S proteasome regulatory	yes	N/A	0.772	0.857	0.316	3e-39
A4RK68	432	Eukaryotic translation in	N/A	N/A	0.385	0.388	0.245	9e-05
A1CD85	471	Eukaryotic translation in	N/A	N/A	0.325	0.301	0.288	0.0004

>sp|P84169|PSD13_CHICK 26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1

 Score =  301 bits (772), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/352 (45%), Positives = 231/352 (65%), Gaps = 12/352 (3%)

Query: 15  QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
           Q++ S  P  +A W  LEELYNKKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct: 9   QQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query: 75  TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
            ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct: 69  HRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSSDEAVILCKTAIGALKLN---- 124

Query: 135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
             G L   ++ I+E+E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGC+
Sbjct: 125 -IGDLQVTKETIEEVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCI 183

Query: 195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
           D+ DL  S+Q + AF +GLA LL + VYN GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct: 184 DVKDLPVSEQQERAFTLGLAGLLGEGVYNFGELLMHPVLESLRSTDRQWLIDTLYAFNSG 243

Query: 255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLP 314
           ++E F+ ++  W    D+ ANE  L QKI LLCLME+ F +     QL+F EI+++A++ 
Sbjct: 244 NVETFQALKSAWGQQPDLAANEALLLQKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKVT 303

Query: 315 LIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLS-------KDQLAF 359
           + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL        KD+L F
Sbjct: 304 VNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEF 355

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
Gallus gallus (taxid: 9031)

>sp|B0BN93|PSD13_RAT 26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1

 Score =  298 bits (763), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 151/343 (44%), Positives = 229/343 (66%), Gaps = 5/343 (1%)

Query: 15  QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
           Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct: 9   QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query: 75  TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
            ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct: 69  HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLN---- 124

Query: 135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
             G L   ++ I+++E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct: 125 -IGDLQATKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query: 195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
           D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct: 184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSG 243

Query: 255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLP 314
           D+++F+ ++  W    D+ ANE +L +KI LLCLME+ F +     QL+F EI+++A++ 
Sbjct: 244 DVDRFQTLKSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT 303

Query: 315 LIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
           + +VE L++KAL++GLV+G ID+VD+  ++TWVQPRVL   Q+
Sbjct: 304 VNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQI 346

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9UNM6|PSD13_HUMAN 26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=2

 Score =  298 bits (762), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 155/352 (44%), Positives = 231/352 (65%), Gaps = 12/352 (3%)

Query: 15  QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
           Q++ +  P   A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct: 9   QQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query: 75  TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
            ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct: 69  HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLN---- 124

Query: 135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
             G L   ++ I+++E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct: 125 -IGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query: 195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
           D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct: 184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSG 243

Query: 255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLP 314
           ++E+F+ ++  W    D+ ANE +L +KI LLCLME+ F +     QL+F EI+++A++ 
Sbjct: 244 NVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT 303

Query: 315 LIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLS-------KDQLAF 359
           + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL        KD+L F
Sbjct: 304 VNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEF 355

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

>sp|Q5E964|PSD13_BOVIN 26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1

 Score =  297 bits (760), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 156/352 (44%), Positives = 231/352 (65%), Gaps = 12/352 (3%)

Query: 15  QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
           Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct: 9   QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query: 75  TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
            ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct: 69  HRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSSDEAVILCKTAIGALKLN---- 124

Query: 135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
             G L   ++ I+++E +++++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct: 125 -IGDLQVTKETIEDVEEMLSNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query: 195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
           D+ DL  S+Q + AF +GLA LL D V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct: 184 DIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSG 243

Query: 255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLP 314
           ++E+F+ ++  W    D+ ANE +L +KI LLCLME+ F +     QL+F EI+ +A++ 
Sbjct: 244 NVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIARSAKIT 303

Query: 315 LIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLS-------KDQLAF 359
           + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL        KD+L F
Sbjct: 304 VNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEF 355

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Bos taurus (taxid: 9913)

>sp|Q9WVJ2|PSD13_MOUSE 26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1

 Score =  294 bits (753), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 150/343 (43%), Positives = 228/343 (66%), Gaps = 5/343 (1%)

Query: 15  QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
           Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct: 9   QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query: 75  TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
            ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct: 69  HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLN---- 124

Query: 135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
             G L   ++ I+++E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct: 125 -IGDLQATKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query: 195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
           D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct: 184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSG 243

Query: 255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLP 314
            +++F+ ++  W    D+ ANE +L +KI LLCLME+ F +     QL+F EI+++A++ 
Sbjct: 244 AVDRFQTLKCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKIT 303

Query: 315 LIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
           + +VE L++KAL++GLV+G ID+VD+  ++TWVQPRVL   Q+
Sbjct: 304 VNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQI 346

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Mus musculus (taxid: 10090)

>sp|Q54NQ0|PSD13_DICDI 26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 127/372 (34%), Positives = 214/372 (57%), Gaps = 20/372 (5%)

Query: 22  PEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVS 81
           P++S Q  N+++ Y  KLWHQLT  +   + +P + ++ EL + Y  F+  FE K+ P+S
Sbjct: 18  PDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLS 77

Query: 82  LMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDE 141
           L+EI   +     D +E+   +++   KVK +  A     IL    I N +  + G  ++
Sbjct: 78  LVEICIAVARQF-DTDESRKFIETISQKVKKDKSAY----ILTLSYIANMNL-RSGVAEQ 131

Query: 142 VEKLIDEIELLVNDIEGVTA----IHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLN 197
           ++     +EL   +++GVT     ++S FY V++  +  +++ S +Y+ AL YL    L 
Sbjct: 132 LQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKNALMYLSYCKLE 191

Query: 198 DLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIE 257
            ++  +Q   A+ + +AAL+ ++VY  G+L+A+PIL +L+ + + WL+  L+AFN GDI+
Sbjct: 192 TISQEEQASLAYNLCIAALVGENVYGFGDLIANPILKALEGSQHNWLIAFLKAFNIGDIQ 251

Query: 258 KFELMRPQW----SAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQL 313
           +FE +  Q     S    I  N  KL QKI++L L+ELAF+       +SF++I++A +L
Sbjct: 252 QFEGLMSQHRDIISTQTAITNNMQKLRQKISILSLLELAFRTPSDKRSISFSKIAQATKL 311

Query: 314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEI 373
           PL E+E L++K+L+L L+KG IDQ  E  ++TWV PR+L  +Q+       S     AE 
Sbjct: 312 PLGEIEHLLMKSLSLNLIKGSIDQTVEIIHITWVTPRILDLNQI------NSMNNRIAEW 365

Query: 374 SEAAQLPLIEVE 385
           +E A+  L  VE
Sbjct: 366 TEKAKTSLRLVE 377

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9US13|RPN9_SCHPO Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn9 PE=3 SV=1

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/348 (34%), Positives = 195/348 (56%), Gaps = 21/348 (6%)

Query: 19  SKNPE-ISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELR-DLYHKFVISFETK 76
           ++ PE +   ++ +E+LY +KLW QLT A++ F   P   +   LR  LY  FV SF   
Sbjct: 18  TRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP---ETVPLRLPLYTNFVNSFRPN 74

Query: 77  INPVSLMEIMEVITNHLSDQEEALVLLQSF-----EDKVKNNLEAKSLCKILQAQMIMNK 131
           IN +  +  M +        +EAL  L        E+K K+     S+  I + ++I   
Sbjct: 75  INQLKAV-YMGLKAFESCSNDEALRNLNQIVNELDEEKYKDAY-VYSIVAIARIKLI--- 129

Query: 132 DADKPGSLDEVEKLIDEIELLVNDIEGVTA-IHSRFYLVASTLYRKQAKLSLYYRTALRY 190
                G LDE  +L+ +   +++ I+ V + IHS +Y V++  Y+ +A  + YYR  L Y
Sbjct: 130 ----SGKLDEARELLVKASKIIDHIDYVESLIHSSYYSVSADYYKAKADYAQYYRHCLLY 185

Query: 191 LGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRA 250
           L C+DL+  + ++ V+ A  + +AA+L D +YN GELL HP+ + L  T + WL +L+ A
Sbjct: 186 LSCIDLDKCSHTELVERAVDLSVAAILGD-IYNFGELLLHPVFELLVGTQHEWLHDLVIA 244

Query: 251 FNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEA 310
            N GD+  FE +  Q + M  ++++   L QKI L+ L+EL F+  P    L+F  I+ A
Sbjct: 245 MNVGDLPLFERLMGQINKMPLLQSSVALLGQKIRLMALIELVFQLPPNQRTLTFDTIARA 304

Query: 311 AQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
            ++P  EVE LI++AL++GL+ G ID+V +   ++ VQ R+L+  Q+A
Sbjct: 305 TRIPSNEVELLIMRALSVGLITGVIDEVTQIVTISSVQSRILNHSQIA 352

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q04062|RPN9_YEAST 26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN9 PE=1 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 197/370 (53%), Gaps = 33/370 (8%)

Query: 8   TVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELR-DLY 66
           T+  T + EA   +P +   +   E+ Y +KLW QL+ ++  F  +    K   LR  LY
Sbjct: 9   TILSTLRMEA---DPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA---KSTPLRLRLY 62

Query: 67  HKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLL-------QSFEDKVKNNLEAKSL 119
             FV  F  KIN +S+++ +        D +E+L  L       Q  + K + N  +K  
Sbjct: 63  DNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDH 122

Query: 120 --------CKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVAS 171
                    +I +  ++ N        LD++EK +D+ + +         I + FY   S
Sbjct: 123 GDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP------LRITNSFYSTNS 176

Query: 172 TLYRKQAKLSLYYRTALRYLGCVDLN-DLTASDQVQHAFLIGLAALLADSVYNIGELLAH 230
             ++ +   + +Y T+L YL  ++ +  +T +++ Q A+ + ++ALL D +YN GELL H
Sbjct: 177 QYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHH 236

Query: 231 PILDSLQQTPNA-WLVELLRAFNAGDIEKFE-LMRPQWSAMNDIKANENKLSQKIALLCL 288
           PI++++    N  WL +LL A   GD +KF+ L++ Q S +  +  +E+ L QKI L+ L
Sbjct: 237 PIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTL 296

Query: 289 MELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQ 348
           +E  F  +     LSF +IS+A  LP   VE L+++A++LGL+KG IDQV+E   ++WVQ
Sbjct: 297 IETVF--VKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQ 354

Query: 349 PRVLSKDQLA 358
           PR++S DQ+ 
Sbjct: 355 PRIISGDQIT 364

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A4RK68|EIF3M_MAGO7 Eukaryotic translation initiation factor 3 subunit M OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=MGG_01595 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 3/171 (1%)

Query: 187 ALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVE 246
           ALR     D  D T+ +  Q A     +A+ + +  +  ++ A P + +L ++ +    +
Sbjct: 195 ALRTFDSEDAEDYTSEEAQQLALRALRSAISSPTRLSFEDIRALPAVHALSES-HPVHYQ 253

Query: 247 LLRAFNAGDIEKFELMRPQWSAMNDIKANENK-LSQKIALLCLMELAFKKIPGSHQLSFA 305
           LL+ F   D++ ++  R +     + +  +N+ L +K+ LL    LA   +  + ++S+ 
Sbjct: 254 LLQIFGEQDLDDYDDFREEHEGFIEKENLDNEVLYRKMRLLTFASLAAASM-QTREISYN 312

Query: 306 EISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQ 356
            I++A Q+P  +VE   I  +  GLV+G + Q  + F +  V+ RV  + Q
Sbjct: 313 SITKALQIPSEDVEMWAIDVIRAGLVEGKLSQKKKVFLIHSVRYRVFGEKQ 363

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|A1CD85|EIF3M_ASPCL Eukaryotic translation initiation factor 3 subunit M OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ACLA_005680 PE=3 SV=1

 Score = 46.2 bits (108), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 7/149 (4%)

Query: 214 AALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFE---LMRPQWSAMN 270
           +AL + +V++   L A   + +L+ T ++ L ELL  F A  ++ +E      P  S   
Sbjct: 241 SALKSPAVFDFTSLTAADAIQALR-TSDSSLFELLEIFTADTLDAYEDFVAATPLASISG 299

Query: 271 DIKANENK-LSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALG 329
            + A+  + L  K+ LL L  +A      S  L +A I+ A ++P  +VE  +I  +  G
Sbjct: 300 GVLADAGEALQNKLRLLTLASIAASA--PSRSLPYATIASALRVPTEDVEKWVIDTIRAG 357

Query: 330 LVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           LV+G + Q+   F V     RV  + Q A
Sbjct: 358 LVEGKLSQLRSEFLVHRATYRVFGEKQWA 386

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
242023731	384	26S proteasome non-ATPase regulatory sub	0.795	0.903	0.540	1e-108
383858967	385	PREDICTED: 26S proteasome non-ATPase reg	0.807	0.914	0.531	1e-107
66547365	385	PREDICTED: 26S proteasome non-ATPase reg	0.795	0.901	0.535	1e-107
340723014	385	PREDICTED: 26S proteasome non-ATPase reg	0.795	0.901	0.535	1e-107
380029155	385	PREDICTED: 26S proteasome non-ATPase reg	0.795	0.901	0.535	1e-107
350423689	385	PREDICTED: 26S proteasome non-ATPase reg	0.795	0.901	0.535	1e-107
307207342	385	26S proteasome non-ATPase regulatory sub	0.795	0.901	0.532	1e-106
322791269	385	hypothetical protein SINV_08497 [Solenop	0.800	0.906	0.523	1e-105
332024719	385	26S proteasome non-ATPase regulatory sub	0.800	0.906	0.515	1e-103
91085239	386	PREDICTED: similar to 26S proteasome sub	0.791	0.893	0.521	1e-100

>gi|242023731|ref|XP_002432284.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis] gi|212517707|gb|EEB19546.1| 26S proteasome non-ATPase regulatory subunit, putative [Pediculus humanus corporis]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/355 (54%), Positives = 268/355 (75%), Gaps = 8/355 (2%)

Query: 4   IVDPTVYLTAKQEAYSKNP-EISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGEL 62
           + D + YL A+Q   S++P EI++ W  LEELYNKKLWHQLTL V  FV+NPA+QK   L
Sbjct: 6   VKDVSQYLQARQ---SESPKEIASDWAKLEELYNKKLWHQLTLKVEEFVKNPALQKGDAL 62

Query: 63  RDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKI 122
             LY+ F+  FE +INP+SL+EI+  +    SD +EA+  L+  E KVK N +A +LCK+
Sbjct: 63  IKLYNNFIYVFENRINPLSLVEIVAYVITQFSDPKEAVEFLEKTEGKVKANNQAVTLCKV 122

Query: 123 LQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSL 182
           L+  +++ K  D+PG+    +K+I+E+E L+++I+GVT +H R+YL+A+  YR+Q K + 
Sbjct: 123 LKGDILLQKLHDQPGT----KKIIEEVEKLLDEIDGVTTVHGRYYLLAAQYYRQQGKHAD 178

Query: 183 YYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNA 242
           YYRTALRYLGC++LNDL+  +Q QHAF +G+AALL + VYN+GELL HPIL++L+ T  A
Sbjct: 179 YYRTALRYLGCIELNDLSKEEQEQHAFFLGIAALLGEGVYNLGELLIHPILETLKYTNKA 238

Query: 243 WLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQL 302
           WLVELL+AFN+G+I KF+ M+PQWS++ D+KA E KL QKI+LLCLME+ FK+   + QL
Sbjct: 239 WLVELLQAFNSGNITKFDKMKPQWSSVPDLKAEERKLRQKISLLCLMEMTFKRSSNNRQL 298

Query: 303 SFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
           +F EI+  A+LP+ EVE L++KALA GLV+G IDQV  + N+TWVQPRVL K+Q+
Sbjct: 299 TFDEIAAEAKLPVNEVELLVMKALAQGLVRGAIDQVSNTVNMTWVQPRVLDKNQI 353

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858967|ref|XP_003704970.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Megachile rotundata]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/361 (53%), Positives = 263/361 (72%), Gaps = 9/361 (2%)

Query: 1   MSTIVDP---TVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQ 57
           M+T V P     YL+  Q    K  +++ +W  LEELYNK+LWHQLTL +  FV+NPA+Q
Sbjct: 1   MATTVVPKDVNTYLSQNQNVADK--QLATEWAQLEELYNKRLWHQLTLKLETFVKNPALQ 58

Query: 58  KEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAK 117
           K   L  LY  F+ +FE KINP+SL+EI+  +     D++EA+  L+  E KVK+N EA 
Sbjct: 59  KGDNLIQLYVNFLSTFENKINPLSLVEILAYVIQQFQDKQEAIKFLEKTEAKVKSNNEAV 118

Query: 118 SLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQ 177
           +LCK+L  Q+++    +K  + ++ +K+I+E+E ++++ +GVT +H RFYL+AS LYR Q
Sbjct: 119 ALCKVLTGQILL----EKLNNQEQAKKIIEEVEAMLDNADGVTTVHGRFYLLASRLYRLQ 174

Query: 178 AKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQ 237
            K + YYRTALRYLGC+DLN L+  +Q QHAF +GLAALL + VYN+GELLAHP+L SL+
Sbjct: 175 GKHAEYYRTALRYLGCIDLNSLSRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLQSLK 234

Query: 238 QTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIP 297
            TPN+WLV+LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+  
Sbjct: 235 GTPNSWLVDLLQAFNAGDIAALEKLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQA 294

Query: 298 GSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
            + QL+FAEIS+  +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+
Sbjct: 295 NNRQLTFAEISQETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRTQI 354

Query: 358 A 358
           A
Sbjct: 355 A 355

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66547365|ref|XP_392692.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 [Apis mellifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/353 (53%), Positives = 261/353 (73%), Gaps = 6/353 (1%)

Query: 6   DPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDL 65
           D   YL+  Q    K  E++A+W  LEELYNK+LWHQLTL +  FV+NP +QK  +L +L
Sbjct: 9   DVNTYLSQNQNVADK--ELAAEWAQLEELYNKRLWHQLTLKLETFVKNPVLQKGDKLVEL 66

Query: 66  YHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQA 125
           Y  F+ +FE KINP+SL+EI+  +     D++EA+  L+  E KVK+N EA +LCK+L  
Sbjct: 67  YVNFLSTFENKINPLSLVEILAYVIQQFQDKQEAIKFLEKTESKVKSNNEAVALCKVLTG 126

Query: 126 QMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYR 185
           Q+++    +K  + ++ +++I+E+E+++++ +GVT +H RFYL+AS LYR Q K + YYR
Sbjct: 127 QILL----EKLNNQEQAKQIIEEVEVMLDNADGVTTVHGRFYLLASRLYRLQGKHAEYYR 182

Query: 186 TALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLV 245
           TALRYLGC+DLN L   +Q QHAF +GLAALL + VYN+GELLAHP+L SL+ TPN+WLV
Sbjct: 183 TALRYLGCIDLNSLNRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLQSLKGTPNSWLV 242

Query: 246 ELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFA 305
           +LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+   + QL+FA
Sbjct: 243 DLLQAFNAGDIVALEKLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQANNRQLTFA 302

Query: 306 EISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           EIS+  +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+A
Sbjct: 303 EISQETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRTQIA 355

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723014|ref|XP_003399894.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Bombus terrestris]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/353 (53%), Positives = 261/353 (73%), Gaps = 6/353 (1%)

Query: 6   DPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDL 65
           D   YL+  Q    K  E++ +W  LEELYNK+LWHQLTL +  FV+NPA+QK  +L  L
Sbjct: 9   DVNTYLSQNQNVADK--ELATEWAQLEELYNKRLWHQLTLKLETFVKNPALQKGDKLVQL 66

Query: 66  YHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQA 125
           Y  F+ +FE KINP+SL+EI+  +     D++EA+  L+  E KVK+N EA +LCK+L  
Sbjct: 67  YINFLSTFENKINPLSLVEILAYVIQQFQDKQEAIKFLEKTESKVKSNNEAVALCKVLTG 126

Query: 126 QMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYR 185
           Q+++    +K  + ++ +++I+E+E ++++ +GVT +H RFYL+AS LYR Q K + YYR
Sbjct: 127 QILL----EKLNNQEQAKQIIEEVEAMLDNADGVTTVHGRFYLLASRLYRLQGKHAEYYR 182

Query: 186 TALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLV 245
           TALRYLGC+DLN+L+  +Q QHAF +GLAALL + VYN+GELLAHP+L SL+ TPN+WLV
Sbjct: 183 TALRYLGCIDLNNLSRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLQSLKGTPNSWLV 242

Query: 246 ELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFA 305
           +LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+   + QL+FA
Sbjct: 243 DLLQAFNAGDIVALEKLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQANNRQLTFA 302

Query: 306 EISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           EIS+  +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+A
Sbjct: 303 EISQETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRTQIA 355

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029155|ref|XP_003698247.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Apis florea]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/353 (53%), Positives = 260/353 (73%), Gaps = 6/353 (1%)

Query: 6   DPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDL 65
           D   YL+  Q    K  E++A+W  LEELYNK+LWHQLTL +  FV+NP +QK  +L +L
Sbjct: 9   DVNTYLSQNQNVADK--ELAAEWAQLEELYNKRLWHQLTLKLETFVKNPVLQKGDKLVEL 66

Query: 66  YHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQA 125
           Y  F+ +FE KINP+SL+EI+  +     D++EA+  L+  E KVK+N EA +LCK+L  
Sbjct: 67  YLNFLSTFENKINPLSLVEILAYVIQQFQDKQEAIKFLEKTESKVKSNNEAVALCKVLTG 126

Query: 126 QMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYR 185
           Q+++    +K  + ++ +++I+E+E ++++ +GVT +H RFYL+AS LYR Q K + YYR
Sbjct: 127 QILL----EKLNNQEQAKQIIEEVEAMLDNADGVTTVHGRFYLLASRLYRLQGKHAEYYR 182

Query: 186 TALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLV 245
           TALRYLGC+DLN L   +Q QHAF +GLAALL + VYN+GELLAHP+L SL+ TPN+WLV
Sbjct: 183 TALRYLGCIDLNSLNRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLQSLKGTPNSWLV 242

Query: 246 ELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFA 305
           +LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+   + QL+FA
Sbjct: 243 DLLQAFNAGDIVALEKLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQANNRQLTFA 302

Query: 306 EISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           EIS+  +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+A
Sbjct: 303 EISQETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRTQIA 355

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423689|ref|XP_003493560.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 13-like [Bombus impatiens]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/353 (53%), Positives = 261/353 (73%), Gaps = 6/353 (1%)

Query: 6   DPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDL 65
           D   YL+  Q    K  E++ +W  LEELYNK+LWHQLTL +  FV+NPA+QK  +L  L
Sbjct: 9   DVNTYLSQNQNVADK--ELATEWAQLEELYNKRLWHQLTLKLETFVKNPALQKGDKLVQL 66

Query: 66  YHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQA 125
           Y  F+ +FE KINP+SL+EI+  +     D++EA+  L+  E KVK+N EA +LCK+L  
Sbjct: 67  YINFLSTFENKINPLSLVEILAYVIQQFQDKQEAIKFLEKTESKVKSNNEAVALCKVLTG 126

Query: 126 QMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYR 185
           Q+++    +K  + ++ +++I+E+E ++++ +GVT +H RFYL+AS LYR Q K + YYR
Sbjct: 127 QILL----EKLNNQEQAKQIIEEVEAILDNADGVTTVHGRFYLLASRLYRLQGKHAEYYR 182

Query: 186 TALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLV 245
           TALRYLGC+DLN+L+  +Q QHAF +GLAALL + VYN+GELLAHP+L SL+ TPN+WLV
Sbjct: 183 TALRYLGCIDLNNLSRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLQSLKGTPNSWLV 242

Query: 246 ELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFA 305
           +LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+   + QL+FA
Sbjct: 243 DLLQAFNAGDIVALEKLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQANNRQLTFA 302

Query: 306 EISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           EIS+  +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+A
Sbjct: 303 EISQETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRTQIA 355

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207342|gb|EFN85092.1| 26S proteasome non-ATPase regulatory subunit 13 [Harpegnathos saltator]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/353 (53%), Positives = 263/353 (74%), Gaps = 6/353 (1%)

Query: 6   DPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDL 65
           D  V+L++KQ    K  E++A+WL LEELY K+LWHQLTL +  FV++PA+Q+   L  L
Sbjct: 9   DVNVFLSSKQNVPDK--ELAAEWLQLEELYGKRLWHQLTLKLETFVKHPALQQGDNLVQL 66

Query: 66  YHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQA 125
           Y  F+ +FE KINP+SL+EI+  +     D++EA+  L+  E KV++N EA +LCK+L+ 
Sbjct: 67  YVNFLSTFENKINPLSLVEILAHVIQQFQDKQEAIKFLEKTETKVQSNNEAVALCKVLKG 126

Query: 126 QMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYR 185
           Q+++    DK  + +E +K+I+E+E ++++ +G+T +H RFYL+AS LYR Q K + YYR
Sbjct: 127 QILL----DKLNNQEEAKKIIEEVETMLDNADGITTVHGRFYLLASRLYRLQGKHAEYYR 182

Query: 186 TALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLV 245
           TALRYLGC++LN L+  +Q QHAF +GLAALL + VYN+GELLAHP+L+SL+ T N+WLV
Sbjct: 183 TALRYLGCIELNSLSRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLESLRGTTNSWLV 242

Query: 246 ELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFA 305
           +LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+   + QL+FA
Sbjct: 243 DLLQAFNAGDIVALERLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQANNRQLTFA 302

Query: 306 EISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           EIS   +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+A
Sbjct: 303 EISHETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRSQIA 355

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791269|gb|EFZ15793.1| hypothetical protein SINV_08497 [Solenopsis invicta]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/355 (52%), Positives = 262/355 (73%), Gaps = 6/355 (1%)

Query: 4   IVDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELR 63
           + D   +L+ KQ A  K  E++ +W  LEELY+K+LWHQLTL +  FV+NP +Q+   L 
Sbjct: 7   VKDVNTFLSQKQNAADK--ELATEWAQLEELYSKRLWHQLTLKLETFVKNPVLQQGDNLV 64

Query: 64  DLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKIL 123
            LY  F+ +FE KINP+SL+EI+  +     D++EA+  L+  E KV++N EA +LCK+L
Sbjct: 65  QLYVNFLSTFENKINPLSLVEILAHVIQQFQDKQEAIKFLEKTETKVQSNNEAIALCKVL 124

Query: 124 QAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLY 183
           + Q+++    DK  + ++ +K+I+E+E ++++ +GVT +H RFYL+AS LYR Q K + Y
Sbjct: 125 KGQILL----DKLNNQEQAKKIIEEVEAMLDNADGVTTVHGRFYLLASRLYRLQGKHAEY 180

Query: 184 YRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAW 243
           YRTALRYLGC++L+ L+  +Q QHAF +GLAALL + VYN+GELLAHP+L+SL+ TPN W
Sbjct: 181 YRTALRYLGCIELSSLSRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLESLKGTPNNW 240

Query: 244 LVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLS 303
           LV+LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+   + QL+
Sbjct: 241 LVDLLQAFNAGDIVALERLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQANNRQLT 300

Query: 304 FAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           FAEIS+  +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+A
Sbjct: 301 FAEISQETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRSQIA 355

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024719|gb|EGI64908.1| 26S proteasome non-ATPase regulatory subunit 13 [Acromyrmex echinatior]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/355 (51%), Positives = 261/355 (73%), Gaps = 6/355 (1%)

Query: 4   IVDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELR 63
           + D   +L+ KQ    K  E++A+W  LEELY+K+LWHQLTL +  FV++P +Q+E  L 
Sbjct: 7   VKDLNTFLSQKQNVADK--ELAAEWAQLEELYSKRLWHQLTLKLETFVKHPILQQEDNLV 64

Query: 64  DLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKIL 123
            LY  F+ +FE KINP+SL+EI+  +   L D ++A+  L+  E KV++N EA +LCK+L
Sbjct: 65  QLYVNFLSTFENKINPLSLVEILAHVIPQLQDNQDAIKFLEKTETKVQSNNEAVALCKVL 124

Query: 124 QAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLY 183
           + Q+++    DK  + ++ +K+I+++E ++++ +G+T +H RFYL+AS LYR Q K + Y
Sbjct: 125 KGQILL----DKLNNQEQTKKIIEDVEAMLDNADGITTVHGRFYLLASRLYRLQGKHAEY 180

Query: 184 YRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAW 243
           YRTALRYLGC++L+ L   +Q QHAF +GLAALL + VYN+GELLAHP+L+SL+ TPN W
Sbjct: 181 YRTALRYLGCIELSSLNRQEQEQHAFFLGLAALLGEGVYNLGELLAHPVLESLKGTPNNW 240

Query: 244 LVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLS 303
           LV+LL+AFNAGDI   E ++PQWS + D+ A E KL QKI+LLCLME+ FK+   + QL+
Sbjct: 241 LVDLLQAFNAGDIVALERLKPQWSKVADLAAQELKLRQKISLLCLMEMTFKRQANNRQLT 300

Query: 304 FAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           F EIS+  +LPL EVE L++KALA GLV+G IDQV  + N+TWVQPRVL + Q+A
Sbjct: 301 FTEISQETRLPLGEVELLVMKALAQGLVRGAIDQVAGTVNMTWVQPRVLDRSQIA 355

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91085239|ref|XP_973002.1| PREDICTED: similar to 26S proteasome subunit [Tribolium castaneum] gi|270009093|gb|EFA05541.1| hypothetical protein TcasGA2_TC015728 [Tribolium castaneum]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/351 (52%), Positives = 251/351 (71%), Gaps = 6/351 (1%)

Query: 8   TVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYH 67
           T YL+ KQ+   K  +++ +W  +EEL+NKKLWHQLTL +L F++ P +QK   L  LY+
Sbjct: 12  TDYLSKKQKESPK--DLATEWAEIEELHNKKLWHQLTLKLLNFIKKPELQKGDNLVQLYN 69

Query: 68  KFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQM 127
            F+ +FE KINP+SL+EI  V+     D +EA+  L+  E KVK N +A++LCK+L  Q+
Sbjct: 70  NFIQTFENKINPLSLVEIAAVVVEQFKDPKEAISFLEKTETKVKINPDAQNLCKVLAGQI 129

Query: 128 IMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTA 187
            +    DK   LD  +K+I+E+E  +++ +GVTA+H RFYL+AS  YR Q   + YYRTA
Sbjct: 130 QL----DKLNDLDATKKVIEEVEATLDNADGVTAVHGRFYLLASQYYRIQGDHAQYYRTA 185

Query: 188 LRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVEL 247
           LRYLGC+DL+ LTA  + QHAF +GLAALL + VYN+GELLAHP+L+SL+ T   WLVEL
Sbjct: 186 LRYLGCIDLDTLTAEVKHQHAFFLGLAALLGEGVYNLGELLAHPVLESLKSTETGWLVEL 245

Query: 248 LRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEI 307
           L AFN+GDI K+E MR  W A+ D+ A E  L QKI+LLCLME+ FK+   + QL+F EI
Sbjct: 246 LYAFNSGDINKYEQMRSHWGAIADLAAQELFLRQKISLLCLMEMTFKRPSHNRQLTFNEI 305

Query: 308 SEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           ++  +LP+ EVE L++KAL+ GLVKG IDQV  + N+TWVQPRVL + Q++
Sbjct: 306 AKETKLPVNEVEVLVMKALSQGLVKGAIDQVAGTVNMTWVQPRVLDRSQIS 356

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	436
ZFIN|ZDB-GENE-040426-1004	413	psmd13 "proteasome (prosome, m	0.777	0.820	0.453	6.6e-81
FB|FBgn0028691	382	Rpn9 "Regulatory particle non-	0.786	0.897	0.454	6e-80
UNIPROTKB|P84169	376	PSMD13 "26S proteasome non-ATP	0.772	0.896	0.459	1.2e-79
UNIPROTKB|E2R5N5	376	PSMD13 "Uncharacterized protei	0.772	0.896	0.450	5.4e-79
UNIPROTKB|Q5E964	376	PSMD13 "26S proteasome non-ATP	0.772	0.896	0.450	1.4e-78
RGD|1305236	376	Psmd13 "proteasome (prosome, m	0.772	0.896	0.444	1.4e-78
UNIPROTKB|Q9UNM6	376	PSMD13 "26S proteasome non-ATP	0.772	0.896	0.447	1.8e-78
UNIPROTKB|F1RGC9	376	PSMD13 "Uncharacterized protei	0.772	0.896	0.447	2.3e-78
MGI|MGI:1345192	376	Psmd13 "proteasome (prosome, m	0.772	0.896	0.441	1.6e-77
UNIPROTKB|G8JKV6	345	PSMD13 "26S proteasome non-ATP	0.720	0.910	0.445	1.6e-72

ZFIN|ZDB-GENE-040426-1004 psmd13 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" [Danio rerio (taxid:7955)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 156/344 (45%), Positives = 234/344 (68%)

Query:    14 KQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISF 73
             +Q++ S  PEI+A+W +LE+ YN+KLWHQLTL +  FVQ+P   K   L  LY  F+  F
Sbjct:    45 QQQSQSPTPEIAAEWHSLEDFYNRKLWHQLTLKLTVFVQDPYFAKGDGLIQLYENFLCDF 104

Query:    74 ETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDA 133
             E +INP+SL+EI+  +   + D   A+  L+  ++KVK + EA  LCK     + ++  +
Sbjct:   105 EHRINPLSLVEIILHVARQMQDPNTAITFLEKTKEKVKASDEAVILCKTSIGSLKLDI-S 163

Query:   134 DKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGC 193
             D P +    +KLI+E+E ++N++ GVT++H RFY ++S  YR     +LYY+ ALRYLGC
Sbjct:   164 DLPAT----KKLIEEVEEMLNNLPGVTSVHGRFYDLSSKYYRIIGNHALYYKDALRYLGC 219

Query:   194 VDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNA 253
             V+  DL  ++Q + AF +GLA LL + VYN GELL HP+L+SL+ T   WL++ L AFNA
Sbjct:   220 VEAKDLPEAEQQERAFTLGLAGLLGEGVYNFGELLMHPVLESLRNTDKQWLIDTLFAFNA 279

Query:   254 GDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQL 313
             G++EKF+ ++  W    D+ A E KL QKI LLC+ME+ F +   + QLSF EI+++A++
Sbjct:   280 GNVEKFQALKTAWGQQPDLAAQEAKLMQKIQLLCVMEMTFTRPANNRQLSFQEIAQSAKI 339

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + EVE L++KAL++GL+KG ID+V++  ++TWVQPRVL   Q+
Sbjct:   340 QVNEVELLVMKALSVGLIKGSIDEVEKKVHMTWVQPRVLDVQQI 383

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000502 "proteasome complex" evidence=IEA

FB|FBgn0028691 Rpn9 "Regulatory particle non-ATPase 9" [Drosophila melanogaster (taxid:7227)]

 Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
 Identities = 159/350 (45%), Positives = 239/350 (68%)

Query:     8 TVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYH 67
             T YL  +++  + N E++A+W  +EELYN+KLW++LT+ ++ FV++ ++Q E  L  LY 
Sbjct:     9 TAYLATQKK--TTNKELAAEWTLIEELYNEKLWNELTIKLVTFVRHESLQDETALLQLYQ 66

Query:    68 KFVISFETKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQM 127
              F+ +FETKINP  L++I+EV+ +++ D++EA+  L+  +DKVK   EA    +++Q  +
Sbjct:    67 NFLSTFETKINPYGLIQILEVVVDNIGDKKEAIEFLEKMKDKVKICDEAVWYLQVMQGNL 126

Query:   128 IMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTA 187
              ++   D    L+  +K+I+E+  ++ +   VT +H ++Y++AS  YR+  K S YYR  
Sbjct:   127 YLSNLND----LNATKKIIEELRDVLEEAGNVTPVHGKYYMLASQYYRRVGKHSDYYRCG 182

Query:   188 LRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVEL 247
             L++LGC  +++       Q AF +GLAALL D VYNIGELLAHPIL+SL+ T N WL+EL
Sbjct:   183 LQFLGC-SMDEYPRDQWAQQAFFLGLAALLGDGVYNIGELLAHPILESLKGTENEWLMEL 241

Query:   248 LRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEI 307
             L+AFN GDI KF  M+  WS + D+ A E KL QKI+LLCLME+ FK+      +SF +I
Sbjct:   242 LKAFNTGDINKFNDMKKIWSKIPDLAAQEVKLRQKISLLCLMEMTFKRSAIERAISFTDI 301

Query:   308 SEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
             ++  +LP  EVE LI+KALAL LV+G IDQV    N++WVQPRVL++ Q+
Sbjct:   302 AQETKLPAKEVELLIMKALALDLVRGEIDQVAGVVNMSWVQPRVLNRSQI 351

GO:0008541 "proteasome regulatory particle, lid subcomplex" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=ISS;IDA

GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0007096 "regulation of exit from mitosis" evidence=IMP

UNIPROTKB|P84169 PSMD13 "26S proteasome non-ATPase regulatory subunit 13" [Gallus gallus (taxid:9031)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 158/344 (45%), Positives = 231/344 (67%)

Query:    15 QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
             Q++ S  P  +A W  LEELYNKKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct:     9 QQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query:    75 TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
              ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct:    69 HRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSSDEAVILCKTAIGALKLNI--- 125

Query:   135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
               G L   ++ I+E+E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGC+
Sbjct:   126 --GDLQVTKETIEEVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCI 183

Query:   195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
             D+ DL  S+Q + AF +GLA LL + VYN GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct:   184 DVKDLPVSEQQERAFTLGLAGLLGEGVYNFGELLMHPVLESLRSTDRQWLIDTLYAFNSG 243

Query:   255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQL 313
             ++E F+ ++  W    D+ ANE  L QKI LLCLME+ F + P +H QL+F EI+++A++
Sbjct:   244 NVETFQALKSAWGQQPDLAANEALLLQKIQLLCLMEMTFTR-PANHRQLTFEEIAKSAKV 302

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL   Q+
Sbjct:   303 TVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346

GO:0022624 "proteasome accessory complex" evidence=ISS

UNIPROTKB|E2R5N5 PSMD13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
 Identities = 155/344 (45%), Positives = 232/344 (67%)

Query:    15 QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
             Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct:     9 QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query:    75 TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
              ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct:    69 HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNI--- 125

Query:   135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
               G L   ++ I+++E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct:   126 --GDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query:   195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
             D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct:   184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRSTDRQWLIDTLYAFNSG 243

Query:   255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQL 313
             ++E+F+ ++  W    D+ ANE +L +KI LLCLME+ F + P +H QL+F EI+++A++
Sbjct:   244 NVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTR-PANHRQLTFEEIAKSAKI 302

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL   Q+
Sbjct:   303 TVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346

GO:0007127 "meiosis I" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

UNIPROTKB|Q5E964 PSMD13 "26S proteasome non-ATPase regulatory subunit 13" [Bos taurus (taxid:9913)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 155/344 (45%), Positives = 231/344 (67%)

Query:    15 QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
             Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct:     9 QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query:    75 TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
              ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct:    69 HRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSSDEAVILCKTAIGALKLNI--- 125

Query:   135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
               G L   ++ I+++E +++++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct:   126 --GDLQVTKETIEDVEEMLSNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query:   195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
             D+ DL  S+Q + AF +GLA LL D V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct:   184 DIKDLPVSEQQERAFTLGLAGLLGDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSG 243

Query:   255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQL 313
             ++E+F+ ++  W    D+ ANE +L +KI LLCLME+ F + P +H QL+F EI+ +A++
Sbjct:   244 NVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTR-PANHRQLTFEEIARSAKI 302

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL   Q+
Sbjct:   303 TVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346

GO:0022624 "proteasome accessory complex" evidence=ISS

RGD|1305236 Psmd13 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" [Rattus norvegicus (taxid:10116)]

 Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
 Identities = 153/344 (44%), Positives = 232/344 (67%)

Query:    15 QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
             Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct:     9 QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query:    75 TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
              ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct:    69 HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNI--- 125

Query:   135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
               G L   ++ I+++E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct:   126 --GDLQATKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query:   195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
             D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct:   184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSG 243

Query:   255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQL 313
             D+++F+ ++  W    D+ ANE +L +KI LLCLME+ F + P +H QL+F EI+++A++
Sbjct:   244 DVDRFQTLKSAWGQQPDLAANEAQLLRKIQLLCLMEMTFTR-PANHRQLTFEEIAKSAKI 302

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + +VE L++KAL++GLV+G ID+VD+  ++TWVQPRVL   Q+
Sbjct:   303 TVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQI 346

GO:0005838 "proteasome regulatory particle" evidence=IEA;ISO

GO:0007127 "meiosis I" evidence=IEA;ISO

GO:0022624 "proteasome accessory complex" evidence=ISO;ISS

UNIPROTKB|Q9UNM6 PSMD13 "26S proteasome non-ATPase regulatory subunit 13" [Homo sapiens (taxid:9606)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 154/344 (44%), Positives = 231/344 (67%)

Query:    15 QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
             Q++ +  P   A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct:     9 QQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query:    75 TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
              ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct:    69 HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNI--- 125

Query:   135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
               G L   ++ I+++E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct:   126 --GDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query:   195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
             D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct:   184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSG 243

Query:   255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQL 313
             ++E+F+ ++  W    D+ ANE +L +KI LLCLME+ F + P +H QL+F EI+++A++
Sbjct:   244 NVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTR-PANHRQLTFEEIAKSAKI 302

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL   Q+
Sbjct:   303 TVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0007127 "meiosis I" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

UNIPROTKB|F1RGC9 PSMD13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 154/344 (44%), Positives = 231/344 (67%)

Query:    15 QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
             Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct:     9 QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query:    75 TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
              ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct:    69 HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNI--- 125

Query:   135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
               G L   ++ I+++E +++ + GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct:   126 --GDLQVTKETIEDVEEMLSSLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query:   195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
             D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct:   184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSG 243

Query:   255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQL 313
             ++E+F+ ++  W    D+ ANE +L +KI LLCLME+ F + P +H QL+F EI+++A++
Sbjct:   244 NVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTR-PANHRQLTFEEIAKSAKI 302

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + EVE L++KAL++GLVKG ID+VD+  ++TWVQPRVL   Q+
Sbjct:   303 TVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQI 346

GO:0007127 "meiosis I" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

MGI|MGI:1345192 Psmd13 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 13" [Mus musculus (taxid:10090)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 152/344 (44%), Positives = 231/344 (67%)

Query:    15 QEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFE 74
             Q++ S  P  +A W  LEELY KKLWHQLTL VL FVQ+P   +   L  LY  F+  FE
Sbjct:     9 QQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFE 68

Query:    75 TKINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDAD 134
              ++NP+SL+EI+  +   ++D   AL  L+   +KVK++ EA  LCK     + +N    
Sbjct:    69 HRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNI--- 125

Query:   135 KPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV 194
               G L   ++ I+++E ++N++ GVT++HSRFY ++S  Y+     + YY+ ALR+LGCV
Sbjct:   126 --GDLQATKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCV 183

Query:   195 DLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAG 254
             D+ DL  S+Q + AF +GLA LL + V+N GELL HP+L+SL+ T   WL++ L AFN+G
Sbjct:   184 DIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSG 243

Query:   255 DIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQL 313
              +++F+ ++  W    D+ ANE +L +KI LLCLME+ F + P +H QL+F EI+++A++
Sbjct:   244 AVDRFQTLKCAWGQQPDLAANEAQLLRKIQLLCLMEMTFTR-PANHRQLTFEEIAKSAKI 302

Query:   314 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQL 357
              + +VE L++KAL++GLV+G ID+VD+  ++TWVQPRVL   Q+
Sbjct:   303 TVNKVELLVMKALSVGLVRGSIDEVDKRVHMTWVQPRVLDLQQI 346

GO:0000502 "proteasome complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=ISA

GO:0005838 "proteasome regulatory particle" evidence=IDA

GO:0007127 "meiosis I" evidence=IMP

GO:0008152 "metabolic process" evidence=ISA

GO:0022624 "proteasome accessory complex" evidence=IDA

UNIPROTKB|G8JKV6 PSMD13 "26S proteasome non-ATPase regulatory subunit 13" [Bos taurus (taxid:9913)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 143/321 (44%), Positives = 217/321 (67%)

Query:    38 KLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQE 97
             +LWHQLTL VL FVQ+P   +   L  LY  F+  FE ++NP+SL+EI+  +   ++D  
Sbjct:     1 RLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPN 60

Query:    98 EALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIE 157
              AL  L+   +KVK++ EA  LCK     + +N      G L   ++ I+++E +++++ 
Sbjct:    61 VALSFLEKTREKVKSSDEAVILCKTAIGALKLNI-----GDLQVTKETIEDVEEMLSNLP 115

Query:   158 GVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALL 217
             GVT++HSRFY ++S  Y+     + YY+ ALR+LGCVD+ DL  S+Q + AF +GLA LL
Sbjct:   116 GVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLL 175

Query:   218 ADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANEN 277
              D V+N GELL HP+L+SL+ T   WL++ L AFN+G++E+F+ ++  W    D+ ANE 
Sbjct:   176 GDGVFNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEA 235

Query:   278 KLSQKIALLCLMELAFKKIPGSH-QLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHID 336
             +L +KI LLCLME+ F + P +H QL+F EI+ +A++ + EVE L++KAL++GLVKG ID
Sbjct:   236 QLLRKIQLLCLMEMTFTR-PANHRQLTFEEIARSAKITVNEVELLVMKALSVGLVKGSID 294

Query:   337 QVDESFNVTWVQPRVLSKDQL 357
             +VD+  ++TWVQPRVL   Q+
Sbjct:   295 EVDKRVHMTWVQPRVLDLQQI 315

GO:0007127 "meiosis I" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9US13	RPN9_SCHPO	No assigned EC number	0.3419	0.75	0.8582	yes	N/A
P84169	PSD13_CHICK	No assigned EC number	0.4517	0.7798	0.9042	yes	N/A
B0BN93	PSD13_RAT	No assigned EC number	0.4402	0.7752	0.8989	yes	N/A
Q9UNM6	PSD13_HUMAN	No assigned EC number	0.4403	0.7798	0.9042	yes	N/A
Q9WVJ2	PSD13_MOUSE	No assigned EC number	0.4373	0.7752	0.8989	yes	N/A
Q5E964	PSD13_BOVIN	No assigned EC number	0.4431	0.7798	0.9042	yes	N/A
Q54NQ0	PSD13_DICDI	No assigned EC number	0.3413	0.8073	0.9142	yes	N/A
Q04062	RPN9_YEAST	No assigned EC number	0.3162	0.7729	0.8575	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	436
smart00753	88	smart00753, PAM, PCI/PINT associated module	2e-08
smart00088	88	smart00088, PINT, motif in proteasome subunits, In	2e-08
pfam01399	100	pfam01399, PCI, PCI domain	8e-08
smart00753	88	smart00753, PAM, PCI/PINT associated module	1e-07
smart00088	88	smart00088, PINT, motif in proteasome subunits, In	1e-07
pfam01399	100	pfam01399, PCI, PCI domain	0.002

>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 276 ENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHI 335
             +L +KI L  L++L+         +S +++++   L + EVE L+ KA+  G +   I
Sbjct: 3   VERLQRKIRLTNLLQLSEPY----SSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKI 58

Query: 336 DQVDESFNVTWVQPRVLSKDQLAFKKI 362
           DQV+       V PR         + +
Sbjct: 59  DQVNGIVEFEEVDPRRSEPLAQFAETL 85

Length = 88

>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 276 ENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHI 335
             +L +KI L  L++L+         +S +++++   L + EVE L+ KA+  G +   I
Sbjct: 3   VERLQRKIRLTNLLQLSEPY----SSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKI 58

Query: 336 DQVDESFNVTWVQPRVLSKDQLAFKKI 362
           DQV+       V PR         + +
Sbjct: 59  DQVNGIVEFEEVDPRRSEPLAQFAETL 85

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function. Length = 88

>gnl|CDD|216479 pfam01399, PCI, PCI domain

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 246 ELLRAFNAGDIEKF-ELMRPQWSAMNDIKANE--NKLSQKIALLCLMELAFKKIPGSHQL 302
           +LLRAF +GD+  F E++      + D    E    L +KI  L L  LA         +
Sbjct: 3   DLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKP----YSSI 58

Query: 303 SFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 339
           S +++++   L + EVE ++ K +  G ++G IDQV+
Sbjct: 59  SLSDLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVN 95

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100

>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 367 QLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVF 424
            +S +++++   L + EVE L+ KA+  G +   IDQV+       V PR       F
Sbjct: 24  SISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRRSEPLAQF 81

Length = 88

>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 367 QLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVF 424
            +S +++++   L + EVE L+ KA+  G +   IDQV+       V PR       F
Sbjct: 24  SISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRRSEPLAQF 81

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function. Length = 88

>gnl|CDD|216479 pfam01399, PCI, PCI domain

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 366 HQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD 405
             +S +++++   L + EVE ++ K +  G ++G IDQV+
Sbjct: 56  SSISLSDLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVN 95

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	436
KOG2908|consensus	380		100.0
KOG2753|consensus	378		100.0
KOG2908|consensus	380		99.91
KOG3250|consensus	258		99.83
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	99.59
KOG1464|consensus	440		99.35
smart00753	88	PAM PCI/PINT associated module.	99.25
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	99.25
KOG2753|consensus	378		99.08
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	98.76
smart00753	88	PAM PCI/PINT associated module.	98.76
KOG2581|consensus	493		98.51
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	98.5
KOG0687|consensus	393		97.97
KOG1463|consensus	411		97.77
KOG0686|consensus	466		97.73
COG5187	412	RPN7 26S proteasome regulatory complex component,	97.56
KOG1497|consensus	399		97.45
KOG2688|consensus	394		97.26
KOG2758|consensus	432		97.23
KOG2581|consensus	493		96.93
COG5600	413	Transcription-associated recombination protein [DN	96.85
COG5159	421	RPN6 26S proteasome regulatory complex component [	96.84
KOG3250|consensus	258		96.23
KOG1498|consensus	439		96.23
KOG1076|consensus	843		95.49
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.33
KOG2582|consensus	422		95.07
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	93.14
KOG1497|consensus	399		92.25
KOG2072|consensus	988		90.72
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	90.01
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	88.4
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	85.43
KOG1464|consensus	440		85.02
PF09756	188	DDRGK: DDRGK domain; InterPro: IPR019153 This is a	84.43
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	84.25
PF09743	272	DUF2042: Uncharacterized conserved protein (DUF204	83.08
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	82.55
COG1595	182	RpoE DNA-directed RNA polymerase specialized sigma	81.55
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	81.51

>KOG2908|consensus

Probab=100.00  E-value=8.9e-92  Score=687.49  Aligned_cols=351  Identities=46%  Similarity=0.783  Sum_probs=343.5

Q ss_pred             CChhHHHhHHHHhhcCCchHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHhhccCchhHHH
Q psy3716           5 VDPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLME   84 (436)
Q Consensus         5 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~KLWhQLT~~l~~~~~~p~~~~~~~~~~ly~~fI~~f~~kin~l~l~~   84 (436)
                      .++++||+ ++ ..+++|++++.|.+++++|++|||||||.++.+||.+|+|+.++.++++|.|||+.|+.||||+++|+
T Consensus         2 ~~~~~~L~-~~-~~~a~~~l~~ew~~leeLy~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslve   79 (380)
T KOG2908|consen    2 MNAPDYLQ-TQ-LKSANPSLAAEWDRLEELYEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVE   79 (380)
T ss_pred             CcHHHHHH-HH-HhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHH
Confidence            46889998 67 78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhhcCCcc--hhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhcccChhH-
Q psy3716          85 IMEVITNHLSDQEEALVLLQSFEDKVKNNLE--AKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTA-  161 (436)
Q Consensus        85 i~~~v~~~~~d~~~aL~~L~~l~~~l~~~~e--a~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~~~~~~~-  161 (436)
                      |++.++++++|+++||+||+++.++++..++  +.+|+.+++|+.+|.     .||+.++|+.|++.++.+++.+++++ 
T Consensus        80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~-----i~DLk~~kk~ldd~~~~ld~~~~v~~~  154 (380)
T KOG2908|consen   80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLE-----INDLKEIKKLLDDLKSMLDSLDGVTSN  154 (380)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh-----cccHHHHHHHHHHHHHHHhcccCCChh
Confidence            9999999999999999999999999988766  999999999999999     99999999999999999999999975 


Q ss_pred             HHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCchhccCcccccccCCCc
Q psy3716         162 IHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPN  241 (436)
Q Consensus       162 v~~~~y~~~a~~~k~~~~~~~~Y~~~L~yL~~~~~~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~~  241 (436)
                      ||+.||++++.|||..|++++||+++|+||+|.+.+++|.++++++|++|++|||+|++||||||||+||++.+|.||++
T Consensus       155 Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~  234 (380)
T KOG2908|consen  155 VHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNR  234 (380)
T ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhcCChhHHHhhhhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHH
Q psy3716         242 AWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFL  321 (436)
Q Consensus       242 ~wl~~LL~~f~~Gdl~~f~~~~~~~~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~l  321 (436)
                      .||+++|.+||.||+..|++.+..|.++|+|+.++.++++||||||||++||.+|++.|++||++||++|+||.+|||++
T Consensus       235 eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~L  314 (380)
T KOG2908|consen  235 EWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVELL  314 (380)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcccccccCCccEEEEEeccccccccchhhcccc
Q psy3716         322 IIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKI  362 (436)
Q Consensus       322 vikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l~Qi~~lr~  362 (436)
                      ||||+|.|||+|+|||++|+|+++|||||+++..|+..|+.
T Consensus       315 VMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~Mk~  355 (380)
T KOG2908|consen  315 VMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVKMKD  355 (380)
T ss_pred             HHHHHhccceeeeecccccEEEEecccccccCHHHHHhHHH
Confidence            99999999999999999999999999999999999999973

>KOG2753|consensus

Probab=100.00  E-value=9.5e-41  Score=326.52  Aligned_cols=302  Identities=18%  Similarity=0.230  Sum_probs=261.9

Q ss_pred             HHHHHHHHHhcCcccccchhHHHHHHHHHHHHhhccCchhHH----HHHHHHhccCCC--HHHHHHHHHHHHHhhcCCcc
Q psy3716          42 QLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLM----EIMEVITNHLSD--QEEALVLLQSFEDKVKNNLE  115 (436)
Q Consensus        42 QLT~~l~~~~~~p~~~~~~~~~~ly~~fI~~f~~kin~l~l~----~i~~~v~~~~~d--~~~aL~~L~~l~~~l~~~~e  115 (436)
                      +.+..+......|    ++++..+|+.|++.+..-- |-+-.    .||-.++.+..+  |..+|..|.+++|.+.+..+
T Consensus        47 ~ii~~c~v~~k~~----ekdle~vlnsi~sLi~~~~-~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~  121 (378)
T KOG2753|consen   47 MIIEACDVLAKIP----EKDLECVLNSIVSLIKNAP-PEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTP  121 (378)
T ss_pred             HHHHHhHHhhcCC----cchHHHHHHHHHHHHHhCC-HHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCch
Confidence            3344444455555    4668999999998875444 76644    455555555443  56899999999999988777


Q ss_pred             hhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCC
Q psy3716         116 AKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVD  195 (436)
Q Consensus       116 a~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~~~~~~~v~~~~y~~~a~~~k~~~~~~~~Y~~~L~yL~~~~  195 (436)
                      ++.-+.+....+...     .+.+...-+-++.+++|+.+|+...+.++.+|++.++..+..+..++.-+.+..||++++
T Consensus       122 aR~~Vy~~lv~la~~-----~~~~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt  196 (378)
T KOG2753|consen  122 ARYQVYMSLVTLAAS-----CKLIEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYT  196 (378)
T ss_pred             HHHHHHHHHHHHHhh-----cceeeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhc
Confidence            887777666555555     667788888999999999999999999999999999999988888899999999999998


Q ss_pred             CCCCChhHHHHHHHHHHHHHhcCCCCCCCchhccCcccccccCCCchhHHHHHHHHhcCChhHHHhhhhhhhcC-chhhh
Q psy3716         196 LNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAM-NDIKA  274 (436)
Q Consensus       196 ~~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~~~wl~~LL~~f~~Gdl~~f~~~~~~~~~~-~~L~~  274 (436)
                      .++  .+++++.|.++++.|+.+|++|.|++|+.+|+|+.|+++.   +|+||.+|.+|.+++|.+|.+.++++ ...+.
T Consensus       197 ~dn--as~AredA~rcV~~av~dP~~F~fD~Ll~L~pV~qLE~d~---i~qLL~IF~s~~L~aYveF~~~N~~Fvqs~gl  271 (378)
T KOG2753|consen  197 EDN--ASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPVKQLEGDL---IHQLLKIFVSGKLDAYVEFVAANSGFVQSQGL  271 (378)
T ss_pred             ccc--hhHHHHHHHHHHHHHHcCCceeccchhccCchHHHhccch---HHHHHHHHHhcchHHHHHHHHhChHHHHHhcc
Confidence            877  7789999999999999999999999999999999999877   89999999999999999999887775 55677


Q ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEecccccccc
Q psy3716         275 NENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSK  354 (436)
Q Consensus       275 ~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l  354 (436)
                      .++.+.+||||||||+||..    +.+|||++|+++|+|.+||||.|||+||+.|+|+|+|||.+++|+|+.+++|.|+.
T Consensus       272 ~~E~~~~KMRLLTlm~LA~e----s~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~kidq~~~~viVs~~~hR~FG~  347 (378)
T KOG2753|consen  272 VHEQNMAKMRLLTLMSLAEE----SNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSSTHRTFGK  347 (378)
T ss_pred             cHHHHHHHHHHHHHHHHhcc----CCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeehhhhhhccc
Confidence            88899999999999999983    36999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhcccc
Q psy3716         355 DQLAFKKI  362 (436)
Q Consensus       355 ~Qi~~lr~  362 (436)
                      .||+.++.
T Consensus       348 ~qW~~L~~  355 (378)
T KOG2753|consen  348 QQWQQLRD  355 (378)
T ss_pred             HHHHHHHH
Confidence            99999975

>KOG2908|consensus

Probab=99.91  E-value=2.2e-23  Score=205.83  Aligned_cols=76  Identities=46%  Similarity=0.781  Sum_probs=74.5

Q ss_pred             cccccchhhccccCCcccccHHHHHHHcCCChhhHHHHHHHHHhcccceeecccccceEEEeeecccccchhhhhH
Q psy3716         350 RVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFW  425 (436)
Q Consensus       350 RvL~l~Qi~~lr~~~~r~~sf~~i~~~~~~~~~~ve~lvmka~s~~li~g~idqv~~~v~~~wv~pr~l~~~q~~~  425 (436)
                      |.|+++++.|.+|+++|++||++||+.|++|.++||+|||||+|+|||+|+||||+|.|+++|||||||+++||.-
T Consensus       277 ~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~~~qI~~  352 (380)
T KOG2908|consen  277 RLLALIEITFSRPANERTLSFKEIAEATKIPNKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLDRSQIVK  352 (380)
T ss_pred             HHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHHHHHHHHhccceeeeecccccEEEEecccccccCHHHHHh
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999964

>KOG3250|consensus

Probab=99.83  E-value=6.4e-21  Score=177.54  Aligned_cols=168  Identities=22%  Similarity=0.273  Sum_probs=147.9

Q ss_pred             HHHHHHHHhcCCCCCCCchhccCcccccccCCCchhHHHHHHHHhcCChhHHHhhhhhhhcCchhhhhHHHHHHHHHHHH
Q psy3716         208 AFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIALLC  287 (436)
Q Consensus       208 A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~~~wl~~LL~~f~~Gdl~~f~~~~~~~~~~~~L~~~~~~l~~KirLla  287 (436)
                      .-.++..|+-+|++|.|||||..|.+..|.++..+..++||++|++|++.+|..   ++...|.|...   -..|++-++
T Consensus        26 l~~lIsqale~P~vf~F~ELl~l~nv~qlae~~dsa~lrlL~lFa~Gt~~Dy~a---ea~rlp~Ls~~---q~~kLk~lt   99 (258)
T KOG3250|consen   26 LEELISQALEAPGVFVFGELLILPNVVQLAEPIDSAYLRLLELFAYGTYRDYSA---EALRLPKLSLA---QLNKLKHLT   99 (258)
T ss_pred             HHHHHHHHhcCCCeeeHHHHHhhhhHHHHcccccHHHHHHHHHHhcCchhhhhh---hhhcCCCCCHH---HHHhhhcce
Confidence            566788999999999999999999999999988888999999999999999987   34455666544   478999999


Q ss_pred             HHHHHhhcCCCCcccCHHHHHHHhCC-ChhhHHHHHHHHHhCCcccccccCCccEEEEEeccccccccchhhccccCCcc
Q psy3716         288 LMELAFKKIPGSHQLSFAEISEAAQL-PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSH  366 (436)
Q Consensus       288 L~~L~~~~p~~~r~isf~~Ia~~l~i-~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l~Qi~~lr~~~~r  366 (436)
                      ..++|..    ++.|+|..+-+.+.. +..++|++||.|+++++++|||||.+|+++|.|+..|.+...++..|.     
T Consensus       100 V~slas~----~k~lpy~~Ll~~l~~~nvrelEd~iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~-----  170 (258)
T KOG3250|consen  100 VVSLASF----EKCLPYLVLLRLLPSRNVRELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMK-----  170 (258)
T ss_pred             ehhhhhh----chhhhHHHHHhhccCCchhHHHHHHHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHH-----
Confidence            9999975    479999999999999 689999999999999999999999999999999999999999999995     


Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHH
Q psy3716         367 QLSFAEISEAAQLPLIEVEFLIIKA  391 (436)
Q Consensus       367 ~~sf~~i~~~~~~~~~~ve~lvmka  391 (436)
                       -|+++|++.|..-+-.+|.-|-+|
T Consensus       171 -~TL~~w~~~cenvL~~ie~qv~~a  194 (258)
T KOG3250|consen  171 -YTLDEWCEGCENVLFGIEAQVPRA  194 (258)
T ss_pred             -HHHHHHHHHHHHHHHHHHhccchh
Confidence             688999998876666666555444

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=99.59  E-value=8.4e-15  Score=122.42  Aligned_cols=100  Identities=32%  Similarity=0.366  Sum_probs=89.6

Q ss_pred             hHHHHHHHHhcCChhHHHhhhhhh----hcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhH
Q psy3716         243 WLVELLRAFNAGDIEKFELMRPQW----SAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEV  318 (436)
Q Consensus       243 wl~~LL~~f~~Gdl~~f~~~~~~~----~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eV  318 (436)
                      |+++|+++|..||+..|.++...+    ..++.+....+.++++++..+|..++.  +  .+++++++||+.++++.++|
T Consensus         2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~--~--y~~i~~~~ia~~l~~~~~~v   77 (105)
T PF01399_consen    2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSK--P--YSSISISEIAKALQLSEEEV   77 (105)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH--C---SEEEHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH--H--hcccchHHHHHHhccchHHH
Confidence            789999999999999999886654    345778888999999999999999997  3  47999999999999999999


Q ss_pred             HHHHHHHHhCCcccccccCCccEEEEEe
Q psy3716         319 EFLIIKALALGLVKGHIDQVDESFNVTW  346 (436)
Q Consensus       319 E~lvikAi~~gLI~G~IDQv~~~v~vtw  346 (436)
                      |.+++++|..|+|+|+|||.+|+|+++|
T Consensus        78 E~~l~~~I~~~~i~~~ID~~~~~v~~~k  105 (105)
T PF01399_consen   78 ESILIDLISNGLIKAKIDQVNGVVVFSK  105 (105)
T ss_dssp             HHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred             HHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence            9999999999999999999999999987

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>KOG1464|consensus

Probab=99.35  E-value=3.5e-11  Score=117.19  Aligned_cols=273  Identities=16%  Similarity=0.272  Sum_probs=185.3

Q ss_pred             hhHHHHHHHHHHHHhh----ccCchhHHHHHHHHhccCCCHHHHHHHHHHHHHhhcCCcchhH--HHHHHHHHHhhccCC
Q psy3716          60 GELRDLYHKFVISFET----KINPVSLMEIMEVITNHLSDQEEALVLLQSFEDKVKNNLEAKS--LCKILQAQMIMNKDA  133 (436)
Q Consensus        60 ~~~~~ly~~fI~~f~~----kin~l~l~~i~~~v~~~~~d~~~aL~~L~~l~~~l~~~~ea~~--~~~~~i~~~~l~~~~  133 (436)
                      ++..+-|...+.-+.+    .-..-+.-.|+-.++.. .....--+|-++....++....-++  -..+..|.+++.   
T Consensus        82 ~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS-~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd---  157 (440)
T KOG1464|consen   82 KEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS-KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFD---  157 (440)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhhee---
Confidence            4566666665443322    22233344455555421 1122222455555555554333232  234556677777   


Q ss_pred             CCCCChHHHHHHHHHHHHHHhcccChh-----HHHHHHHHHHHHHHHH---hhcHHHHHHHHHHHhc-------------
Q psy3716         134 DKPGSLDEVEKLIDEIELLVNDIEGVT-----AIHSRFYLVASTLYRK---QAKLSLYYRTALRYLG-------------  192 (436)
Q Consensus       134 ~~~~~l~~~~~~L~~~~~~L~~~~~~~-----~v~~~~y~~~a~~~k~---~~~~~~~Y~~~L~yL~-------------  192 (436)
                        .+++....++++++......-+|.+     ...-..|-+-.+.|-.   .+.....|..+|..-+             
T Consensus       158 --~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRE  235 (440)
T KOG1464|consen  158 --RGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRE  235 (440)
T ss_pred             --HHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHH
Confidence              7888888899999888876555531     1111223222222211   2333445555554433             


Q ss_pred             ---------------------cC-CCCCCChhHHHHHHHHHHHHHhcC-CCCCCCchhccCcccccccC-CCchhHHHHH
Q psy3716         193 ---------------------CV-DLNDLTASDQVQHAFLIGLAALLA-DSVYNIGELLAHPILDSLQQ-TPNAWLVELL  248 (436)
Q Consensus       193 ---------------------~~-~~~~l~~~e~~~~A~~l~iaALl~-~~iynFgeLl~~p~v~~L~~-t~~~wl~~LL  248 (436)
                                           .| +.|+.+++.+..+.+++++|.++- .+|..|+.--+.|.    ++ ++.-.+.+|+
T Consensus       236 CGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPy----KNdPEIlAMTnlv  311 (440)
T KOG1464|consen  236 CGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPY----KNDPEILAMTNLV  311 (440)
T ss_pred             cCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCC----CCCHHHHHHHHHH
Confidence                                 12 446777888999999999999886 67888988777775    44 5667789999


Q ss_pred             HHHhcCChhHHHhhhhh----hhcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHH
Q psy3716         249 RAFNAGDIEKFELMRPQ----WSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIK  324 (436)
Q Consensus       249 ~~f~~Gdl~~f~~~~~~----~~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvik  324 (436)
                      .++...|+.+|+.+...    +..+|.+..+.+.+.++||-..|+.|+  +|+.+-.|||  |+++|+||+.|||.|++.
T Consensus       312 ~aYQ~NdI~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLI--kPYt~i~Ipf--is~~Lnv~~~dV~~LLV~  387 (440)
T KOG1464|consen  312 AAYQNNDIIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLI--KPYTNIGIPF--ISKELNVPEADVESLLVS  387 (440)
T ss_pred             HHHhcccHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHh--ccccccCchh--hHhhcCCCHHHHHHHHHH
Confidence            99999999999997543    556799999999999999999999999  6865444555  999999999999999999


Q ss_pred             HHhCCcccccccCCccEEEEEe
Q psy3716         325 ALALGLVKGHIDQVDESFNVTW  346 (436)
Q Consensus       325 Ai~~gLI~G~IDQv~~~v~vtw  346 (436)
                      ||-..-|+|+|||+++.+....
T Consensus       388 ~ILD~~i~g~Ide~n~~l~~~~  409 (440)
T KOG1464|consen  388 CILDDTIDGRIDEVNQYLELDK  409 (440)
T ss_pred             HHhccccccchHHhhhHhccCc
Confidence            9999999999999998876543

>smart00753 PAM PCI/PINT associated module

Probab=99.25  E-value=1.2e-11  Score=101.29  Aligned_cols=81  Identities=30%  Similarity=0.364  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEecccccccc
Q psy3716         275 NENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSK  354 (436)
Q Consensus       275 ~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l  354 (436)
                      +.+.+.+|+|..++..++..    +++|+|++|++.+++|.++||.+|+++|..|.|.|+|||.+++|.++|..||.  .
T Consensus         2 ~~~~l~~~~~~~~l~~l~~~----y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~   75 (88)
T smart00753        2 LVERLQRKIRLTNLLQLSEP----YSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--S   75 (88)
T ss_pred             hHHHHHHHHHHHHHHHHhHH----hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--h
Confidence            35678999999999999963    47999999999999999999999999999999999999999999999999997  5


Q ss_pred             chhhccc
Q psy3716         355 DQLAFKK  361 (436)
Q Consensus       355 ~Qi~~lr  361 (436)
                      .+|..+.
T Consensus        76 ~~~~~~~   82 (88)
T smart00753       76 EPLAQFA   82 (88)
T ss_pred             hHHHHHH
Confidence            5666553

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=99.25  E-value=1.2e-11  Score=101.29  Aligned_cols=81  Identities=30%  Similarity=0.364  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEecccccccc
Q psy3716         275 NENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSK  354 (436)
Q Consensus       275 ~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l  354 (436)
                      +.+.+.+|+|..++..++..    +++|+|++|++.+++|.++||.+|+++|..|.|.|+|||.+++|.++|..||.  .
T Consensus         2 ~~~~l~~~~~~~~l~~l~~~----y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~   75 (88)
T smart00088        2 LVERLQRKIRLTNLLQLSEP----YSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--S   75 (88)
T ss_pred             hHHHHHHHHHHHHHHHHhHH----hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--h
Confidence            35678999999999999963    47999999999999999999999999999999999999999999999999997  5


Q ss_pred             chhhccc
Q psy3716         355 DQLAFKK  361 (436)
Q Consensus       355 ~Qi~~lr  361 (436)
                      .+|..+.
T Consensus        76 ~~~~~~~   82 (88)
T smart00088       76 EPLAQFA   82 (88)
T ss_pred             hHHHHHH
Confidence            5666553

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>KOG2753|consensus

Probab=99.08  E-value=6e-11  Score=117.66  Aligned_cols=78  Identities=31%  Similarity=0.428  Sum_probs=70.5

Q ss_pred             cccccchhhccccCCcccccHHHHHHHcCCChhhHHHHHHHHHhcccceeecccccceEEEeeecccccchhhhhHHHHH
Q psy3716         350 RVLSKDQLAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEE  429 (436)
Q Consensus       350 RvL~l~Qi~~lr~~~~r~~sf~~i~~~~~~~~~~ve~lvmka~s~~li~g~idqv~~~v~~~wv~pr~l~~~q~~~~~~~  429 (436)
                      |+|+.+++..    ...++||++|++++++..||||.+|++|+..|||+|+|||.+++|+|+.+++|++++.||+ +||+
T Consensus       281 RLLTlm~LA~----es~eisy~~l~k~LqI~edeVE~fVIdaI~aklV~~kidq~~~~viVs~~~hR~FG~~qW~-~L~~  355 (378)
T KOG2753|consen  281 RLLTLMSLAE----ESNEISYDTLAKELQINEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSSTHRTFGKQQWQ-QLRD  355 (378)
T ss_pred             HHHHHHHHhc----cCCCCCHHHHHHHhccCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeehhhhhhcccHHHH-HHHH
Confidence            6777777777    2458999999999999999999999999999999999999999999999999999999997 5776


Q ss_pred             HHh
Q psy3716         430 TVA  432 (436)
Q Consensus       430 ~~~  432 (436)
                      ..|
T Consensus       356 kL~  358 (378)
T KOG2753|consen  356 KLA  358 (378)
T ss_pred             HHH
Confidence            554

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=98.76  E-value=1.5e-08  Score=82.91  Aligned_cols=64  Identities=28%  Similarity=0.400  Sum_probs=56.7

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhcccceeecccccceEEEeeecccccchhhhhHHHHHHH
Q psy3716         365 SHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETV  431 (436)
Q Consensus       365 ~r~~sf~~i~~~~~~~~~~ve~lvmka~s~~li~g~idqv~~~v~~~wv~pr~l~~~q~~~~~~~~~  431 (436)
                      .++++|++||+.+++|.++||.+|++++..|.+.|+|||.+++|+++|.+||.  .+||. .+.+++
T Consensus        22 y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~~~~~-~~~~~l   85 (88)
T smart00088       22 YSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--SEPLA-QFAETL   85 (88)
T ss_pred             hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--hhHHH-HHHHHh
Confidence            46899999999999999999999999999999999999999999999999998  55554 444443

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>smart00753 PAM PCI/PINT associated module

Probab=98.76  E-value=1.5e-08  Score=82.91  Aligned_cols=64  Identities=28%  Similarity=0.400  Sum_probs=56.7

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhcccceeecccccceEEEeeecccccchhhhhHHHHHHH
Q psy3716         365 SHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSLEETV  431 (436)
Q Consensus       365 ~r~~sf~~i~~~~~~~~~~ve~lvmka~s~~li~g~idqv~~~v~~~wv~pr~l~~~q~~~~~~~~~  431 (436)
                      .++++|++||+.+++|.++||.+|++++..|.+.|+|||.+++|+++|.+||.  .+||. .+.+++
T Consensus        22 y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r~--~~~~~-~~~~~l   85 (88)
T smart00753       22 YSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPRR--SEPLA-QFAETL   85 (88)
T ss_pred             hceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchhh--hhHHH-HHHHHh
Confidence            46899999999999999999999999999999999999999999999999998  55554 444443

>KOG2581|consensus

Probab=98.51  E-value=4.8e-05  Score=78.15  Aligned_cols=166  Identities=20%  Similarity=0.253  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCchhccCcccc-cccCC
Q psy3716         161 AIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILD-SLQQT  239 (436)
Q Consensus       161 ~v~~~~y~~~a~~~k~~~~~~~~Y~~~L~yL~~~~~~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~-~L~~t  239 (436)
                      ...++|..-.....-..++|++.-++.+..+.-.|. +....-+++.-+-+++..|+.-+|-.- .....|+++ +|   
T Consensus       244 ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k~~ivv~ll~geiPer-s~F~Qp~~~ksL---  318 (493)
T KOG2581|consen  244 NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNKLMIVVELLLGEIPER-SVFRQPGMRKSL---  318 (493)
T ss_pred             HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHHHHHHHHHHcCCCcch-hhhcCccHHHHH---
Confidence            355554444444444578888888877777766554 334444555555555555554223211 122346554 24   


Q ss_pred             CchhHHHHHHHHhcCChhHHHhhhhh----hhcCch----hhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHh
Q psy3716         240 PNAWLVELLRAFNAGDIEKFELMRPQ----WSAMND----IKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAA  311 (436)
Q Consensus       240 ~~~wl~~LL~~f~~Gdl~~f~~~~~~----~~~~~~----L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l  311 (436)
                        ...++|-.+.-.||++.|+....+    +..+.-    ....++.++.=||.++|.   .      ..||+.+||+.|
T Consensus       319 --~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NVIkTgIR~ISls---Y------SRISl~DIA~kL  387 (493)
T KOG2581|consen  319 --RPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNVIKTGIRKISLS---Y------SRISLQDIAKKL  387 (493)
T ss_pred             --HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhheeee---e------eeccHHHHHHHh
Confidence              237999999999999999986443    333311    123466777777776553   3      479999999999


Q ss_pred             CC-ChhhHHHHHHHHHhCCcccccccCCccEE
Q psy3716         312 QL-PLIEVEFLIIKALALGLVKGHIDQVDESF  342 (436)
Q Consensus       312 ~i-~~~eVE~lvikAi~~gLI~G~IDQv~~~v  342 (436)
                      ++ ++++||.+|=|||+.|+|+|+||--+|.+
T Consensus       388 ~l~Seed~EyiVakAIRDGvIea~Id~~~g~m  419 (493)
T KOG2581|consen  388 GLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFM  419 (493)
T ss_pred             cCCCchhHHHHHHHHHHhccceeeeccccCce
Confidence            99 56679999999999999999999998843

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=98.50  E-value=1.5e-07  Score=78.45  Aligned_cols=48  Identities=35%  Similarity=0.450  Sum_probs=45.1

Q ss_pred             cccccHHHHHHHcCCChhhHHHHHHHHHhcccceeecccccceEEEee
Q psy3716         365 SHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTW  412 (436)
Q Consensus       365 ~r~~sf~~i~~~~~~~~~~ve~lvmka~s~~li~g~idqv~~~v~~~w  412 (436)
                      -+++++++||+.++++.++||.+|+++++.|+|+|+|||++|+|+++|
T Consensus        58 y~~i~~~~ia~~l~~~~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k  105 (105)
T PF01399_consen   58 YSSISISEIAKALQLSEEEVESILIDLISNGLIKAKIDQVNGVVVFSK  105 (105)
T ss_dssp             -SEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred             hcccchHHHHHHhccchHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence            468999999999999999999999999999999999999999999998

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>KOG0687|consensus

Probab=97.97  E-value=0.0034  Score=63.34  Aligned_cols=284  Identities=14%  Similarity=0.122  Sum_probs=187.6

Q ss_pred             hhhHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHhhccCchhHHHHHHHHhc---cCCCHHHHHHHHHHHHHhhcC-
Q psy3716          37 KKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITN---HLSDQEEALVLLQSFEDKVKN-  112 (436)
Q Consensus        37 ~KLWhQLT~~l~~~~~~p~~~~~~~~~~ly~~fI~~f~~kin~l~l~~i~~~v~~---~~~d~~~aL~~L~~l~~~l~~-  112 (436)
                      .++|-++-..++.-+...    +.+.++=.+.-|.+-+.........++-...++   ++.|.+.|++.+....++--. 
T Consensus        62 e~~~i~~D~~~l~~m~~~----neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~  137 (393)
T KOG0687|consen   62 ESLVIKLDQDLLNSMKKA----NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL  137 (393)
T ss_pred             hhcceeccHHHHHHHHHh----hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            367766666655544332    233455557777777777767767776666654   356999999999888876322 


Q ss_pred             C-cchhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhc---ccCh--hHHHHHHHHHHHHHHHHhhcHHHHHHH
Q psy3716         113 N-LEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVND---IEGV--TAIHSRFYLVASTLYRKQAKLSLYYRT  186 (436)
Q Consensus       113 ~-~ea~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~---~~~~--~~v~~~~y~~~a~~~k~~~~~~~~Y~~  186 (436)
                      . .=-.+++.+-+|.++.        |.+-+.+-|+.+++.+++   |+--  -.++..+|.++..-+|      +.-..
T Consensus       138 g~kiDVvf~~iRlglfy~--------D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk------~Aa~L  203 (393)
T KOG0687|consen  138 GHKIDVVFYKIRLGLFYL--------DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFK------EAADL  203 (393)
T ss_pred             ccchhhHHHHHHHHHhhc--------cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHH------HHHHH
Confidence            1 1124666666666654        678888888999888864   5543  2677777777765444      44445


Q ss_pred             HHHHhccCCCCCC-ChhHHHHHHHHHHHHHhcCCCCCCC-chhccCcccccccCCCchhHHHHHHHHhcCChhHHHhh--
Q psy3716         187 ALRYLGCVDLNDL-TASDQVQHAFLIGLAALLADSVYNI-GELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELM--  262 (436)
Q Consensus       187 ~L~yL~~~~~~~l-~~~e~~~~A~~l~iaALl~~~iynF-geLl~~p~v~~L~~t~~~wl~~LL~~f~~Gdl~~f~~~--  262 (436)
                      .+..+++|..-++ |-+..   +.+.++.++.+=+--.. .-.+..|.+...-.+ -..+.+++..+-.-+++.|-.-  
T Consensus       204 fld~vsTFtS~El~~Y~~~---v~Ytv~~g~i~leR~dlktKVi~~~Evl~vl~~-l~~~~q~l~SLY~C~Y~~Ff~~L~  279 (393)
T KOG0687|consen  204 FLDSVSTFTSYELMSYETF---VRYTVITGLIALERVDLKTKVIKCPEVLEVLHK-LPSVSQLLNSLYECDYSDFFNDLA  279 (393)
T ss_pred             HHHHcccccceecccHHHH---HHHHHHHhhheeccchHHhhhcCcHHHHHHhhc-CchHHHHHHHHHhccHHHHHHHHH
Confidence            5667778765444 44444   44555555444111111 123444555442222 1126677777777777776542  


Q ss_pred             ---hhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCc
Q psy3716         263 ---RPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVD  339 (436)
Q Consensus       263 ---~~~~~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~  339 (436)
                         ..++..+-.++.+...--+-||..+-..+-.+    .|+++.+..|++.|++++=++.=+=+-|..|-+.++||-|+
T Consensus       280 ~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLES----Yrsl~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDrVn  355 (393)
T KOG0687|consen  280 AVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLES----YRSLTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDRVN  355 (393)
T ss_pred             HHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeeccc
Confidence               22333345567777777888999998887753    58999999999999999999999999999999999999999


Q ss_pred             cEEEEEe
Q psy3716         340 ESFNVTW  346 (436)
Q Consensus       340 ~~v~vtw  346 (436)
                      |+|.+++
T Consensus       356 GVVEtNr  362 (393)
T KOG0687|consen  356 GVVETNR  362 (393)
T ss_pred             ceeecCC
Confidence            9999875

>KOG1463|consensus

Probab=97.77  E-value=0.0011  Score=67.19  Aligned_cols=243  Identities=13%  Similarity=0.114  Sum_probs=159.0

Q ss_pred             CCHHHHHHHHHHHHHhhcCCcch----hHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhcccChhHHHHHHHHH
Q psy3716          94 SDQEEALVLLQSFEDKVKNNLEA----KSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLV  169 (436)
Q Consensus        94 ~d~~~aL~~L~~l~~~l~~~~ea----~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~~~~~~~v~~~~y~~  169 (436)
                      ....+||.....+...++.=++-    .+++.-..+.+.+       .++..+|.-|......-...-..+...+.+=..
T Consensus       142 ~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l-------~Nl~KakasLTsART~AnaiYcpPqlQa~lDLq  214 (411)
T KOG1463|consen  142 KRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHAL-------RNLPKAKASLTSARTTANAIYCPPQLQATLDLQ  214 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHH-------hcchhHHHHHHHHHHhhcccccCHHHHHHHHHh
Confidence            35667777777777766652222    2333334444444       366666666665554433333334455555554


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHhccCCCCCCCh-hHHHHHHHHHHHHHhcCCCCCCCchhccCcccccccCCCchhHHHHH
Q psy3716         170 ASTLYRKQAKLSLYYRTALRYLGCVDLNDLTA-SDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELL  248 (436)
Q Consensus       170 ~a~~~k~~~~~~~~Y~~~L~yL~~~~~~~l~~-~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~~~wl~~LL  248 (436)
                      +.=+|-.-.+|.-.|.+-......|+.  +.. ..+..-.+++.++-+--+..=.-+.|+.....-...+++...+...-
T Consensus       215 SGIlha~ekDykTafSYFyEAfEgf~s--~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA  292 (411)
T KOG1463|consen  215 SGILHAAEKDYKTAFSYFYEAFEGFDS--LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA  292 (411)
T ss_pred             ccceeecccccchHHHHHHHHHccccc--cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence            444444445666666665555555533  222 45566666666665554444444556665443346677877789999


Q ss_pred             HHHhcCChhHHHhh----hhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHH
Q psy3716         249 RAFNAGDIEKFELM----RPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIK  324 (436)
Q Consensus       249 ~~f~~Gdl~~f~~~----~~~~~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvik  324 (436)
                      ++|...++.+|+.-    .+++..+|....+-..|...|-=--|+.++  .|+  ..+..+.||+-.|++...||.-+=+
T Consensus       293 eA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEknl~riI--EPy--S~Vei~hIA~~IGl~~~~VEkKLsq  368 (411)
T KOG1463|consen  293 EAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNLLEKNLCRII--EPY--SRVEISHIAEVIGLDVPQVEKKLSQ  368 (411)
T ss_pred             HHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHHHHHhHHHHc--Cch--hhhhHHHHHHHHCCCcHHHHHHHHH
Confidence            99999999999974    445666787777766666666555566666  364  5788888999999999999999999


Q ss_pred             HHhCCcccccccCCccEEEEEeccc
Q psy3716         325 ALALGLVKGHIDQVDESFNVTWVQP  349 (436)
Q Consensus       325 Ai~~gLI~G~IDQv~~~v~vtwv~p  349 (436)
                      .|-.+...|.+||-++++.|.=-.|
T Consensus       369 MILDKkf~G~LDQg~g~Liv~~e~~  393 (411)
T KOG1463|consen  369 MILDKKFYGTLDQGEGCLIVFEEPP  393 (411)
T ss_pred             HHHHHHhhcccccCCCeEEEeCCCC
Confidence            9999999999999999998864433

>KOG0686|consensus

Probab=97.73  E-value=0.0012  Score=68.16  Aligned_cols=165  Identities=15%  Similarity=0.182  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHhcCCCCCCCchhc----cCcccccccCCCchhHHHHHHHHhcCChhHHHhhhhhhhc----CchhhhhH
Q psy3716         205 VQHAFLIGLAALLADSVYNIGELL----AHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSA----MNDIKANE  276 (436)
Q Consensus       205 ~~~A~~l~iaALl~~~iynFgeLl----~~p~v~~L~~t~~~wl~~LL~~f~~Gdl~~f~~~~~~~~~----~~~L~~~~  276 (436)
                      ..++.+-++.||..   |.-.+|.    ..-.++.+-+.++. |.++|..|.++.++.--++..++..    ++-|..+.
T Consensus       269 sdv~iYggLcALAt---fdr~~Lk~~vi~n~~Fk~flel~Pq-lr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphV  344 (466)
T KOG0686|consen  269 SDVAIYGGLCALAT---FDRQDLKLNVIKNESFKLFLELEPQ-LREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHV  344 (466)
T ss_pred             hhhHHHHhhHhhcc---CCHHHHHHHHHcchhhhhHHhcChH-HHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhH
Confidence            35578888888765   2222332    22222222233344 8899999999988877776555433    46678889


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEeccccccccch
Q psy3716         277 NKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQ  356 (436)
Q Consensus       277 ~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l~Q  356 (436)
                      +.|..+||=-+|+.--  .|  .-+++++.+|.+.+.++...|.=+++.|-.|.|.|+||+-++.+.+.           
T Consensus       345 d~Ly~~IR~r~llqy~--~p--y~s~~m~~mA~af~~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~~-----------  409 (466)
T KOG0686|consen  345 DNLYSLIRNRALLQYL--SP--YSSADMSKMAEAFNTSVAILESELLELILEGKISGRIDSHNKILYAR-----------  409 (466)
T ss_pred             HHHHHHHHHhhHHHhc--Cc--cccchHHHHHHHhcccHHHHHHHHHHHHHccchheeeccccceeeec-----------
Confidence            9999999999999855  46  36899999999999999999999999999999999999999887654           


Q ss_pred             hhccccCCcccccHHHHHHHcCCChhhHHHHHHHHHh
Q psy3716         357 LAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALA  393 (436)
Q Consensus       357 i~~lr~~~~r~~sf~~i~~~~~~~~~~ve~lvmka~s  393 (436)
                           ++.+|.-+|+++-.-++-..-+.-.++.||.-
T Consensus       410 -----~~~~en~~fe~~~~~~~~~~~~~kal~lr~~~  441 (466)
T KOG0686|consen  410 -----DADSENATFERVLPMGKRSQLEAKALLLRAAL  441 (466)
T ss_pred             -----ccccccchhhhcchhhHHHHHHHHHHHHHHHH
Confidence                 44455566666555555555566677777655

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.044  Score=54.86  Aligned_cols=234  Identities=11%  Similarity=0.060  Sum_probs=147.6

Q ss_pred             CHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhc---ccChh--HHHHHHHHH
Q psy3716          95 DQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVND---IEGVT--AIHSRFYLV  169 (436)
Q Consensus        95 d~~~aL~~L~~l~~~l~~~~ea~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~---~~~~~--~v~~~~y~~  169 (436)
                      |.+.+.+.+..++.+-- +..+.+-+...++++-+.     -|+...+++.|+.+++.++.   |+--.  .++-..|..
T Consensus       130 D~~ng~~~~~~~~~~a~-stg~KiDv~l~kiRlg~~-----y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m  203 (412)
T COG5187         130 DIQNGFEWMRRLMRDAM-STGLKIDVFLCKIRLGLI-----YGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKM  203 (412)
T ss_pred             hhhhHHHHHHHHHHHHH-hcccchhhHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHH
Confidence            55666666655554421 123445555556666666     78889999999999999974   44211  233333333


Q ss_pred             HHHHHHHhhcHHHHHHHHHHHhccCCCCCCCh-hHHHHHHHHHHHHHhcCCCCC-CCchhccCcccccccCC-C-chhHH
Q psy3716         170 ASTLYRKQAKLSLYYRTALRYLGCVDLNDLTA-SDQVQHAFLIGLAALLADSVY-NIGELLAHPILDSLQQT-P-NAWLV  245 (436)
Q Consensus       170 ~a~~~k~~~~~~~~Y~~~L~yL~~~~~~~l~~-~e~~~~A~~l~iaALl~~~iy-nFgeLl~~p~v~~L~~t-~-~~wl~  245 (436)
                      .      ..++.+.-.-.+..|++|...++.+ +..   +.+.++..++.=+-- -=.-++..|.+-++-++ + -.-+.
T Consensus       204 ~------~RnFkeAa~Ll~d~l~tF~S~El~sY~~~---vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~  274 (412)
T COG5187         204 M------RRNFKEAAILLSDILPTFESSELISYSRA---VRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLV  274 (412)
T ss_pred             H------HHhhHHHHHHHHHHhccccccccccHHHH---HHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHH
Confidence            3      3456666677778888987766533 333   556666666541111 11123444433332221 1 11133


Q ss_pred             HHHHHHhcCChh-HHHh----hhhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHH
Q psy3716         246 ELLRAFNAGDIE-KFEL----MRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEF  320 (436)
Q Consensus       246 ~LL~~f~~Gdl~-~f~~----~~~~~~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~  320 (436)
                      +|...+-.-|+. .|..    +++++..+-.++.+.+.--+-||.-+-..+--+    .|.++.+..|+..|++++=|+.
T Consensus       275 ~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlLES----Yr~lsl~sMA~tFgVSV~yvdr  350 (412)
T COG5187         275 QLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLLES----YRLLSLESMAQTFGVSVEYVDR  350 (412)
T ss_pred             HHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHhCccHHHHhh
Confidence            333333333433 2332    344555556788888888888999988888764    5899999999999999999998


Q ss_pred             HHHHHHhCCcccccccCCccEEEEEec
Q psy3716         321 LIIKALALGLVKGHIDQVDESFNVTWV  347 (436)
Q Consensus       321 lvikAi~~gLI~G~IDQv~~~v~vtwv  347 (436)
                      =+=+-|-.|-+.+.||-++|+|..++-
T Consensus       351 DLg~FIp~~~LncvIDRvnGvVetnrp  377 (412)
T COG5187         351 DLGEFIPEGRLNCVIDRVNGVVETNRP  377 (412)
T ss_pred             hHHhhCCCCceeeeeecccceEeccCc
Confidence            888889999999999999999998753

>KOG1497|consensus

Probab=97.45  E-value=0.015  Score=58.63  Aligned_cols=86  Identities=15%  Similarity=0.243  Sum_probs=62.1

Q ss_pred             HHhcCChhHHHhhhhhhhc------CchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHH
Q psy3716         250 AFNAGDIEKFELMRPQWSA------MNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLII  323 (436)
Q Consensus       250 ~f~~Gdl~~f~~~~~~~~~------~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvi  323 (436)
                      +....+++.|..+..-+.+      ...+.  ...+.  =-++++-+|-       ..|||+++++.++||.+.+|..+=
T Consensus       271 iI~k~el~ef~~~L~pHQka~~~dgssil~--ra~~E--hNlls~Skly-------~nisf~~Lg~ll~i~~ekaekiaa  339 (399)
T KOG1497|consen  271 IIRKEELQEFEAFLQPHQKAHTMDGSSILD--RAVIE--HNLLSASKLY-------NNISFEELGALLKIDAEKAEKIAA  339 (399)
T ss_pred             HhcchhHHHHHHHhcchhhhcccCcchhhh--hHHHH--HhHHHHHHHH-------HhccHHHHHHHhCCCHHHHHHHHH
Confidence            4445568888886432211      12222  11222  2355655554       369999999999999999999999


Q ss_pred             HHHhCCcccccccCCccEEEEEe
Q psy3716         324 KALALGLVKGHIDQVDESFNVTW  346 (436)
Q Consensus       324 kAi~~gLI~G~IDQv~~~v~vtw  346 (436)
                      ..|..|-+.|.|||.++.+|.--
T Consensus       340 ~MI~qeRmng~IDQ~egiihFe~  362 (399)
T KOG1497|consen  340 QMITQERMNGSIDQIEGIIHFED  362 (399)
T ss_pred             HHHhHHHhccchHhhcceEeecc
Confidence            99999999999999999999865

>KOG2688|consensus

Probab=97.26  E-value=0.0057  Score=63.42  Aligned_cols=215  Identities=17%  Similarity=0.129  Sum_probs=132.4

Q ss_pred             hhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q psy3716         116 AKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVN---DIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLG  192 (436)
Q Consensus       116 a~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~---~~~~~~~v~~~~y~~~a~~~k~~~~~~~~Y~~~L~yL~  192 (436)
                      +.+++--+.-+++.+     .+.+.-|++.+...++...   .+...+-+.-.||.-  .++--..++...+..+.....
T Consensus       161 ~~~~i~n~lf~Iyfr-----i~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylG--r~a~~~~d~~~A~~~L~~af~  233 (394)
T KOG2688|consen  161 AMLYIVNQLFQIYFR-----IEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLG--RYAMFESDFLNAFLQLNEAFR  233 (394)
T ss_pred             HHHHHHHHHHHHHHH-----HhhHHHhHHHHHHhhccccchhhcccccceeeeeeee--eehhhhhhHHHHHHHHHHHHH
Confidence            456666667778888     8899999998887776642   222222222233322  111112333444444444333


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCchhccCcccccccCCCchhHHHHHHHHhcCChhHHHhhhhhhhcCchh
Q psy3716         193 CVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDI  272 (436)
Q Consensus       193 ~~~~~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~~~wl~~LL~~f~~Gdl~~f~~~~~~~~~~~~L  272 (436)
                      .++.  ........+..+++...++-..         +|-..-|..-+-..+-.|+.+...||+..|....+.++.. ..
T Consensus       234 ~cp~--~~~~n~~~iliylip~~~llg~---------~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~-f~  301 (394)
T KOG2688|consen  234 LCPD--LLLKNKRLILIYLIPTGLLLGR---------IPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERF-FI  301 (394)
T ss_pred             hCcH--HHHhhhhhHHHHHhHHHHHhcc---------CcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHH-HH
Confidence            3332  2233455566666655444322         4554444432233467899999999999999876654432 11


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhc---CCCCcccCHHHHHHHhCC-C-----hhhHHHHHHHHHhCCcccccccCCccEEE
Q psy3716         273 KANENKLSQKIALLCLMELAFKK---IPGSHQLSFAEISEAAQL-P-----LIEVEFLIIKALALGLVKGHIDQVDESFN  343 (436)
Q Consensus       273 ~~~~~~l~~KirLlaL~~L~~~~---p~~~r~isf~~Ia~~l~i-~-----~~eVE~lvikAi~~gLI~G~IDQv~~~v~  343 (436)
                      ....=-...|.++++.-+|..+.   -.....+|++.+..+++. +     .+|||-.+..+|+.|.|+|.|+...+++.
T Consensus       302 ~~gi~l~l~~l~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V  381 (394)
T KOG2688|consen  302 RSGIYLTLEKLPLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLV  381 (394)
T ss_pred             HhccHHHhhhhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEE
Confidence            22222345557777777766421   012358999999999986 3     68999999999999999999999999999


Q ss_pred             EEeccc
Q psy3716         344 VTWVQP  349 (436)
Q Consensus       344 vtwv~p  349 (436)
                      ++.--|
T Consensus       382 ~sK~~p  387 (394)
T KOG2688|consen  382 FSKKDP  387 (394)
T ss_pred             EecCCC
Confidence            876544

>KOG2758|consensus

Probab=97.23  E-value=0.13  Score=52.13  Aligned_cols=187  Identities=11%  Similarity=0.087  Sum_probs=122.4

Q ss_pred             CChHHHHHHHHHHHHHHhcccChh---HHH-H--HHHHHHHHHHH-HhhcH--------H--------HHHHHHHHHhcc
Q psy3716         137 GSLDEVEKLIDEIELLVNDIEGVT---AIH-S--RFYLVASTLYR-KQAKL--------S--------LYYRTALRYLGC  193 (436)
Q Consensus       137 ~~l~~~~~~L~~~~~~L~~~~~~~---~v~-~--~~y~~~a~~~k-~~~~~--------~--------~~Y~~~L~yL~~  193 (436)
                      .+.+.+.+.|..+++.+++-+-.+   .+. |  -+++..--++. .+|.-        .        -.--+.|+||++
T Consensus       181 qnWd~A~edL~rLre~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLat  260 (432)
T KOG2758|consen  181 QNWDGALEDLTRLREYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLAT  260 (432)
T ss_pred             hhHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHH
Confidence            467888888888888887644432   221 1  22222222232 12211        1        122356788887


Q ss_pred             CCCCCCCh-hHHHHHHHHHHHHHhcCCCCCCCchhccCcccccccCCCchhHHHHHH-HHhcCChhHHHhhh---h-hhh
Q psy3716         194 VDLNDLTA-SDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLR-AFNAGDIEKFELMR---P-QWS  267 (436)
Q Consensus       194 ~~~~~l~~-~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~~~wl~~LL~-~f~~Gdl~~f~~~~---~-~~~  267 (436)
                      .   -++. ..++...++++.  +.....|.+.|    |+.            +.|. .|..-|+++-....   . -+.
T Consensus       261 A---vvtnk~~rr~~lkdlvk--VIqqE~ysYkD----Pit------------eFl~clyvn~DFdgAq~kl~eCeeVl~  319 (432)
T KOG2758|consen  261 A---VVTNKRRRRNRLKDLVK--VIQQESYSYKD----PIT------------EFLECLYVNYDFDGAQKKLRECEEVLV  319 (432)
T ss_pred             H---hhcchHhhHHHHHHHHH--HHHHhccccCC----cHH------------HHHHHHhhccchHHHHHHHHHHHHHHh
Confidence            3   1222 556667777764  45556777754    443            2332 34445555555432   2 245


Q ss_pred             cCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEec
Q psy3716         268 AMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWV  347 (436)
Q Consensus       268 ~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv  347 (436)
                      +++.|..--+.-++-.|++-.-..|--    +.+|+.+-+|+.|+.+.+|.|.|++..|+...++++||.--|.|.+.--
T Consensus       320 nDfFLva~l~~F~E~ARl~ifEtfCRI----HqcIti~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~  395 (432)
T KOG2758|consen  320 NDFFLVALLDEFLENARLLIFETFCRI----HQCITIDMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHP  395 (432)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHH----HHheeHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCC
Confidence            567777777777889999988887754    3699999999999999999999999999999999999999999877643


Q ss_pred             c
Q psy3716         348 Q  348 (436)
Q Consensus       348 ~  348 (436)
                      +
T Consensus       396 ~  396 (432)
T KOG2758|consen  396 T  396 (432)
T ss_pred             C
Confidence            3

>KOG2581|consensus

Probab=96.93  E-value=0.052  Score=56.38  Aligned_cols=258  Identities=17%  Similarity=0.221  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhcccC--hhHHHHHHHHHHHHHHHHhhcHHH--HHHHHHHHhc
Q psy3716         117 KSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEG--VTAIHSRFYLVASTLYRKQAKLSL--YYRTALRYLG  192 (436)
Q Consensus       117 ~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~~~~--~~~v~~~~y~~~a~~~k~~~~~~~--~Y~~~L~yL~  192 (436)
                      .+|+.+....+...     ..++.++.+.-++.=..+...+-  .+-+.++.|.-.+-.|+..|+...  .+-+++.--+
T Consensus       125 ~aY~~lLv~Lfl~d-----~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA  199 (493)
T KOG2581|consen  125 EAYLYLLVLLFLID-----QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA  199 (493)
T ss_pred             HHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh
Confidence            34554444444444     45566666555544333332222  245566666666666777777433  3333333333


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCchhccCcccccccCCCchhHH---HHHHHHh-cCChhHHHh-hhhhhh
Q psy3716         193 CVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLV---ELLRAFN-AGDIEKFEL-MRPQWS  267 (436)
Q Consensus       193 ~~~~~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~~~wl~---~LL~~f~-~Gdl~~f~~-~~~~~~  267 (436)
                      +..-    .++-+.....+.+...++.+.|.=.+=+-...+-.=..+...|-.   =+=.|+. .+|+.+-.+ |.+..-
T Consensus       200 tLrh----d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r  275 (493)
T KOG2581|consen  200 TLRH----DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR  275 (493)
T ss_pred             hhcC----cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence            3321    345667777888888888888865542221111000112224422   1212221 344433333 222222


Q ss_pred             cCchhhhhHHHHHHHHHHHHHHHHH---------hhcCCCCcc-cCHHHHHHHhCCC-hh----hHHHH-----------
Q psy3716         268 AMNDIKANENKLSQKIALLCLMELA---------FKKIPGSHQ-LSFAEISEAAQLP-LI----EVEFL-----------  321 (436)
Q Consensus       268 ~~~~L~~~~~~l~~KirLlaL~~L~---------~~~p~~~r~-isf~~Ia~~l~i~-~~----eVE~l-----------  321 (436)
                      +-|. ...-.+..+-..++++++|-         |..|+-.+. .+|=.++++.++. ..    -+|.+           
T Consensus       276 kapq-~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~  354 (493)
T KOG2581|consen  276 KAPQ-HAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT  354 (493)
T ss_pred             hCcc-hhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch
Confidence            3343 23344556666777777764         344422222 3677777777663 21    22222           


Q ss_pred             HHHHHhCCcccccccCCccEEEEEeccccccccchhhccccCCcccccHHHHHHHcCC-ChhhHHHHHHHHHhcccceee
Q psy3716         322 IIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQL-PLIEVEFLIIKALALGLVKGH  400 (436)
Q Consensus       322 vikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l~Qi~~lr~~~~r~~sf~~i~~~~~~-~~~~ve~lvmka~s~~li~g~  400 (436)
                      ++.-++.+.|+--|-++    .++                   =..+|.++||..+++ +.+|||++|-||++-|+|+|+
T Consensus       355 LivRLR~NVIkTgIR~I----Sls-------------------YSRISl~DIA~kL~l~Seed~EyiVakAIRDGvIea~  411 (493)
T KOG2581|consen  355 LIVRLRHNVIKTGIRKI----SLS-------------------YSRISLQDIAKKLGLNSEEDAEYIVAKAIRDGVIEAK  411 (493)
T ss_pred             HHHHHHHHHHHHhhhhe----eee-------------------eeeccHHHHHHHhcCCCchhHHHHHHHHHHhccceee
Confidence            22233333333222111    011                   135999999999999 455699999999999999999


Q ss_pred             cccccce
Q psy3716         401 IDQVDES  407 (436)
Q Consensus       401 idqv~~~  407 (436)
                      ||.-+|.
T Consensus       412 Id~~~g~  418 (493)
T KOG2581|consen  412 IDHEDGF  418 (493)
T ss_pred             eccccCc
Confidence            9998873

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]

Probab=96.85  E-value=0.21  Score=51.56  Aligned_cols=204  Identities=19%  Similarity=0.261  Sum_probs=113.6

Q ss_pred             HHHHhhccCCCCCCChHHHHHHHHHHHHHHhcccChh------HHHHHHHHHHHHHHHHhhcHHHHHHHHHH-HhccCCC
Q psy3716         124 QAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVT------AIHSRFYLVASTLYRKQAKLSLYYRTALR-YLGCVDL  196 (436)
Q Consensus       124 i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~~~~~~------~v~~~~y~~~a~~~k~~~~~~~~Y~~~L~-yL~~~~~  196 (436)
                      ...++++     .+.++-|+..++..+.  .+.....      .|-=.||.-  .||--..++.+.|-+... ++.|-..
T Consensus       183 L~~iY~R-----l~~~~l~~n~lka~~~--vs~~Di~~~~~sq~v~f~YYLG--~~~l~~en~heA~~~L~~aFl~c~~l  253 (413)
T COG5600         183 LFQIYLR-----LGRFKLCENFLKASKE--VSMPDISEYQKSQVVVFHYYLG--IYYLLNENFHEAFLHLNEAFLQCPWL  253 (413)
T ss_pred             HHHHHHH-----hccHHHHHHHHHhccc--ccccccchhhhcceeehhhHHH--HHHHHHHhHHHHHHHHHHHHHhChhh
Confidence            3466777     8999999888876655  2222211      111122222  222222233333333333 4555332


Q ss_pred             CCCChhHHHHHHHHHHHHHhcCCCCCCCchhccCcccccccCCC-chhHHHHHHHHhcCChhHHHhhhhhhhcCchhhh-
Q psy3716         197 NDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTP-NAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKA-  274 (436)
Q Consensus       197 ~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~p~v~~L~~t~-~~wl~~LL~~f~~Gdl~~f~~~~~~~~~~~~L~~-  274 (436)
                         -.-.+..++-..+..+|+-.+.+        |--.-|.... -+..--|..+.-+||+++|....+.++..  +.. 
T Consensus       254 ---~~~n~~rIl~~~ipt~Llv~~~~--------Ptk~~L~r~~~~s~~~~LvkavrsGni~~~~~~l~~ner~--~~~~  320 (413)
T COG5600         254 ---ITRNRKRILPYYIPTSLLVNKFP--------PTKDLLERFKRCSVYSPLVKAVRSGNIEDFDLALSRNERK--FAKR  320 (413)
T ss_pred             ---hhcchheehhHHhhHHHHhCCCC--------CchHHHHhccccchhHHHHHHHHcCCHHHHHHHHHHhHHH--HHHc
Confidence               12234556667777777766555        2222233222 23345688999999999999876654331  211 


Q ss_pred             -hHHHHHHHHHHHHHHHHHhh---cCCCCcccCHHHHHHHhCC---C----hhhHHHHHHHHHhCCcccccccCCccEEE
Q psy3716         275 -NENKLSQKIALLCLMELAFK---KIPGSHQLSFAEISEAAQL---P----LIEVEFLIIKALALGLVKGHIDQVDESFN  343 (436)
Q Consensus       275 -~~~~l~~KirLlaL~~L~~~---~p~~~r~isf~~Ia~~l~i---~----~~eVE~lvikAi~~gLI~G~IDQv~~~v~  343 (436)
                       -.-.+..+-.+++.-+|.-+   .-..+..+|++-+...+++   +    .++||-.+..+|+.|+++|.|.--.++|.
T Consensus       321 ~l~ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn~~~~~~VEciL~tlI~~G~lrgYis~s~~~vV  400 (413)
T COG5600         321 GLYLTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGYISHSRRTVV  400 (413)
T ss_pred             chHHHHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCcccChHHHHHHHHHHHhhhhhhheecccceEEE
Confidence             12223333444444443321   0111223555555555444   2    56899999999999999999999999999


Q ss_pred             EEeccc
Q psy3716         344 VTWVQP  349 (436)
Q Consensus       344 vtwv~p  349 (436)
                      ++.-.|
T Consensus       401 ~sk~~p  406 (413)
T COG5600         401 FSKKDP  406 (413)
T ss_pred             EecCCC
Confidence            887655

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.84  E-value=0.31  Score=48.91  Aligned_cols=164  Identities=12%  Similarity=0.076  Sum_probs=108.7

Q ss_pred             hcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCchhccCcc-cccccCCCchhHHHHHHHHhcCCh
Q psy3716         178 AKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPI-LDSLQQTPNAWLVELLRAFNAGDI  256 (436)
Q Consensus       178 ~~~~~~Y~~~L~yL~~~~~~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~p~-v~~L~~t~~~wl~~LL~~f~~Gdl  256 (436)
                      .+|.-.|.+-...+..|..-+. ..++..-..++.++-+-...+=.-+.++.... +.+.++.....+...-++|+..++
T Consensus       220 ~dyktA~SYF~Ea~Egft~l~~-d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL  298 (421)
T COG5159         220 RDYKTASSYFIEALEGFTLLKM-DVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSL  298 (421)
T ss_pred             ccchhHHHHHHHHHhccccccc-hHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcH
Confidence            3444444444444444432111 24555566666666655544444555555433 334666666778888899999999


Q ss_pred             hHHHhhh----hhhhcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCccc
Q psy3716         257 EKFELMR----PQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVK  332 (436)
Q Consensus       257 ~~f~~~~----~~~~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~  332 (436)
                      .+|+...    +++.++|....+-..+..-+-=--|+..+  .|.  ..+..+-||+-.|++..+||.-+-+.|-.++.-
T Consensus       299 ~df~~aL~qY~~el~~D~~iRsHl~~LYD~LLe~Nl~kii--EPf--s~VeishIa~viGldt~qvEgKLsqMILDKify  374 (421)
T COG5159         299 KDFSDALAQYSDELHQDSFIRSHLQYLYDVLLEKNLVKII--EPF--SVVEISHIADVIGLDTNQVEGKLSQMILDKIFY  374 (421)
T ss_pred             hhHHHHHHHhhHHhccCHHHHHHHHHHHHHHHHhhhhhhc--Ccc--eeeehhHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999753    34555666665544444433333444444  353  467777899999999999999999999999999


Q ss_pred             ccccCCccEEEEEe
Q psy3716         333 GHIDQVDESFNVTW  346 (436)
Q Consensus       333 G~IDQv~~~v~vtw  346 (436)
                      |.+||.++.+.|.-
T Consensus       375 G~LDqg~gcLivy~  388 (421)
T COG5159         375 GTLDQGDGCLIVYG  388 (421)
T ss_pred             hhhccCCceEEEeC
Confidence            99999999998864

>KOG3250|consensus

Probab=96.23  E-value=0.0087  Score=57.08  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=90.6

Q ss_pred             HHHHHhhcCCCCcccCHHHHHHHhCC-----ChhhHHHHHHHHHhCCcccccccCCccEEEEEeccccccccchhhcccc
Q psy3716         288 LMELAFKKIPGSHQLSFAEISEAAQL-----PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKI  362 (436)
Q Consensus       288 L~~L~~~~p~~~r~isf~~Ia~~l~i-----~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l~Qi~~lr~  362 (436)
                      |++=|-..|   ...-|.+|-...++     |.+-+-.=+++.+.-|=+.-.+-.-        ..---|++.|+..++.
T Consensus        29 lIsqale~P---~vf~F~ELl~l~nv~qlae~~dsa~lrlL~lFa~Gt~~Dy~aea--------~rlp~Ls~~q~~kLk~   97 (258)
T KOG3250|consen   29 LISQALEAP---GVFVFGELLILPNVVQLAEPIDSAYLRLLELFAYGTYRDYSAEA--------LRLPKLSLAQLNKLKH   97 (258)
T ss_pred             HHHHHhcCC---CeeeHHHHHhhhhHHHHcccccHHHHHHHHHHhcCchhhhhhhh--------hcCCCCCHHHHHhhhc
Confidence            344455566   47788888877765     4556666667777777665544432        1112344445444432


Q ss_pred             -------CCcccccHHHHHHHcCC-ChhhHHHHHHHHHhcccceeecccccceEEEeeecccccchhhhhHHH
Q psy3716         363 -------PGSHQLSFAEISEAAQL-PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFWSL  427 (436)
Q Consensus       363 -------~~~r~~sf~~i~~~~~~-~~~~ve~lvmka~s~~li~g~idqv~~~v~~~wv~pr~l~~~q~~~~~  427 (436)
                             +-.+.+++...-+.... +.-++|.+||.|+=.+.++|+|||-+++++|+|.--|-|...+|.+-.
T Consensus        98 ltV~slas~~k~lpy~~Ll~~l~~~nvrelEd~iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~  170 (258)
T KOG3250|consen   98 LTVVSLASFEKCLPYLVLLRLLPSRNVRELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMK  170 (258)
T ss_pred             ceehhhhhhchhhhHHHHHhhccCCchhHHHHHHHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHH
Confidence                   12346666666666655 677999999999999999999999999999999999999999887643

>KOG1498|consensus

Probab=96.23  E-value=0.37  Score=50.06  Aligned_cols=249  Identities=15%  Similarity=0.195  Sum_probs=153.8

Q ss_pred             hhHHHHHHHHhccCCCHHHHHHHHHHH----HHhhcCCcchhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhc
Q psy3716          80 VSLMEIMEVITNHLSDQEEALVLLQSF----EDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVND  155 (436)
Q Consensus        80 l~l~~i~~~v~~~~~d~~~aL~~L~~l----~~~l~~~~ea~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~  155 (436)
                      -++.+.+..+-+...|-.+|..+|..+    +..+..+ +-.-| .++.-++-+.     .+|+-.+..+-+.+....-+
T Consensus       131 arlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~-ekV~f-iLEQmrKOG~-----~~D~vra~i~skKI~~K~F~  203 (439)
T KOG1498|consen  131 ARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKS-EKVAF-ILEQMRLCLL-----RLDYVRAQIISKKINKKFFE  203 (439)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHH-HHHHH-HHHHHHHHHH-----hhhHHHHHHHHHHhhHHhcC
Confidence            446666666666667777888777654    2222211 22222 2344455555     68898888888899888877


Q ss_pred             ccChhHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccCCCCCCCh-hHH-HHHHHHHHHHHhcCCCCCCCchhccCccc
Q psy3716         156 IEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTA-SDQ-VQHAFLIGLAALLADSVYNIGELLAHPIL  233 (436)
Q Consensus       156 ~~~~~~v~~~~y~~~a~~~k~~~~~~~~Y~~~L~yL~~~~~~~l~~-~e~-~~~A~~l~iaALl~~~iynFgeLl~~p~v  233 (436)
                      -+.+.+....||.+.-.++-..+.|   +.-+=.|=+.++...... +++ .......+..++++|..--=.+|+++-.-
T Consensus       204 ~~~~~~lKlkyY~lmI~l~lh~~~Y---l~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~  280 (439)
T KOG1498|consen  204 KPDVQELKLKYYELMIRLGLHDRAY---LNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISN  280 (439)
T ss_pred             CccHHHHHHHHHHHHHHhcccccch---hhHHHHHHHHhcccccccChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhc
Confidence            6667788899999877754333332   222222333444333322 222 34444444566777766555566665332


Q ss_pred             c-cccCCCchhHHHHHHHHhcCChhHHHhhhh----hhhcC-----chhh------hhHHHHHHHHHHHHHHHHHhhcCC
Q psy3716         234 D-SLQQTPNAWLVELLRAFNAGDIEKFELMRP----QWSAM-----NDIK------ANENKLSQKIALLCLMELAFKKIP  297 (436)
Q Consensus       234 ~-~L~~t~~~wl~~LL~~f~~Gdl~~f~~~~~----~~~~~-----~~L~------~~~~~l~~KirLlaL~~L~~~~p~  297 (436)
                      + .|.+-+  -.-++|..|.+|.+-.|..+..    .+...     ...+      .......+.||+++=-        
T Consensus       281 dKkL~e~p--~~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~gek~~~dL~~RIiEHNiRiiA~y--------  350 (439)
T KOG1498|consen  281 DKKLSELP--DYKELLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEGEKRWSDLKLRIIEHNIRIIAKY--------  350 (439)
T ss_pred             ccccccCc--cHHHHHHHHHhcceeeehhHhhhhHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHH--------
Confidence            2 243322  1458899999998766653311    11111     1111      1123344556665422        


Q ss_pred             CCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEeccc
Q psy3716         298 GSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQP  349 (436)
Q Consensus       298 ~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~p  349 (436)
                       +..||+.++++-++.|.++.|.++=..+..|-+.+|||+..+.+...-++.
T Consensus       351 -YSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~K~  401 (439)
T KOG1498|consen  351 -YSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKVKD  401 (439)
T ss_pred             -HhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEEEeccc
Confidence             247999999999999999999999999999999999999999988876653

>KOG1076|consensus

Probab=95.49  E-value=5.4  Score=44.44  Aligned_cols=128  Identities=19%  Similarity=0.257  Sum_probs=99.1

Q ss_pred             CCchhccCcccccccCCC---chhHHHHHHHHhcCChhHHHhhhhh----hhcCchhhhhHHHHHHHHHHHHHHHHHhhc
Q psy3716         223 NIGELLAHPILDSLQQTP---NAWLVELLRAFNAGDIEKFELMRPQ----WSAMNDIKANENKLSQKIALLCLMELAFKK  295 (436)
Q Consensus       223 nFgeLl~~p~v~~L~~t~---~~wl~~LL~~f~~Gdl~~f~~~~~~----~~~~~~L~~~~~~l~~KirLlaL~~L~~~~  295 (436)
                      +|--+|.+-.=+++.|+|   -..+..--.++..||+.+-.+|.-.    |.=+|.--.-.+.+.+||+--+|-..-|.=
T Consensus       633 ~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftY  712 (843)
T KOG1076|consen  633 SFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTY  712 (843)
T ss_pred             HHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555556666654   2334555678889999988886433    322333334467789999999999877755


Q ss_pred             CCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEecccc
Q psy3716         296 IPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPR  350 (436)
Q Consensus       296 p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pR  350 (436)
                      ++-+.++|.+.+|+-..+|+..|--.|=+.|...=|.+++||..++|.+++|+|.
T Consensus       713 ss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmiineEl~AslDqpt~~iv~hrvE~s  767 (843)
T KOG1076|consen  713 SSVYDSVSLAKLADMFDLPEPKVHSIISKMIINEELHASLDQPTQCIVMHRVEPS  767 (843)
T ss_pred             hhhhhhccHHHHHHHhCCCchhHHHHHHHHHHHHHhhhccCCCcceEEEeeccch
Confidence            5557799999999999999999999999999999999999999999999999986

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.33  E-value=0.81  Score=45.30  Aligned_cols=172  Identities=15%  Similarity=0.146  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHHHHhhcCCc--chhHHHHHHHHHHhhccCCCCC-CChHHHHHHHHHHHHHHhcccChhHHHHHHHHHHH
Q psy3716          95 DQEEALVLLQSFEDKVKNNL--EAKSLCKILQAQMIMNKDADKP-GSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVAS  171 (436)
Q Consensus        95 d~~~aL~~L~~l~~~l~~~~--ea~~~~~~~i~~~~l~~~~~~~-~~l~~~~~~L~~~~~~L~~~~~~~~v~~~~y~~~a  171 (436)
                      +|++|++.+++..+-.....  .....+...+|.++-.     . |+++.+-....+.-.+...-+ .+......+.-.+
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~-----~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A  162 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE-----QLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAA  162 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC-----TT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHH
Confidence            78888888888777654322  2334555677778776     6 899999888888888876644 3444556666677


Q ss_pred             HHHHHhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHhcCCCCCCCchhccC-ccc-ccccCC-CchhHHHHH
Q psy3716         172 TLYRKQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAFLIGLAALLADSVYNIGELLAH-PIL-DSLQQT-PNAWLVELL  248 (436)
Q Consensus       172 ~~~k~~~~~~~~Y~~~L~yL~~~~~~~l~~~e~~~~A~~l~iaALl~~~iynFgeLl~~-p~v-~~L~~t-~~~wl~~LL  248 (436)
                      ..+-..|+|.+.....-+.....-...+..-...+.....++.-|..++...-...+.- -.. -...+| ++.-+.+|+
T Consensus       163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~  242 (282)
T PF14938_consen  163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLL  242 (282)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Confidence            77777788777666655544433222344445566666677767766543322222210 000 012333 578899999


Q ss_pred             HHHhcCChhHHHhhhhhhhcCchh
Q psy3716         249 RAFNAGDIEKFELMRPQWSAMNDI  272 (436)
Q Consensus       249 ~~f~~Gdl~~f~~~~~~~~~~~~L  272 (436)
                      ++|..||.+.|.+......+...|
T Consensus       243 ~A~~~~D~e~f~~av~~~d~~~~l  266 (282)
T PF14938_consen  243 EAYEEGDVEAFTEAVAEYDSISRL  266 (282)
T ss_dssp             HHHHTT-CCCHHHHCHHHTTSS--
T ss_pred             HHHHhCCHHHHHHHHHHHcccCcc
Confidence            999999999999876655444333

>KOG2582|consensus

Probab=95.07  E-value=1.7  Score=44.90  Aligned_cols=302  Identities=14%  Similarity=0.144  Sum_probs=153.3

Q ss_pred             chHHHHHHHHHHHHHhhhHHHHHHHHHH----------------HhcCcccc-cchhHHHHHHHHHHHHh-hccCc--hh
Q psy3716          22 PEISAQWLNLEELYNKKLWHQLTLAVLA----------------FVQNPAIQ-KEGELRDLYHKFVISFE-TKINP--VS   81 (436)
Q Consensus        22 ~~~~~~~~~l~~l~~~KLWhQLT~~l~~----------------~~~~p~~~-~~~~~~~ly~~fI~~f~-~kin~--l~   81 (436)
                      .++++...+-.++.+++.=| +-..|..                -+..|... ....++.+++.||+..- ..++.  -.
T Consensus        22 ~eL~~~i~~~~ell~k~~~~-~~~~L~~ld~~~hSlgml~~l~~~f~~~~~~~~~~~li~~~~~FV~~~n~eqlr~as~~  100 (422)
T KOG2582|consen   22 GELAELIVKSKELLAKNSSD-LDAVLLHLDPQVHSLGMLAVLKVKFHTPSANPDPETLIELLNDFVDENNGEQLRLASEI  100 (422)
T ss_pred             HHHHHHHHhhHHHHHhCcch-HHHHHHhcCccccchhhhhhhhccccCcccCCCHHHHHHHHHHHHHhcChHHHhhHHHH
Confidence            47788888888888877443 3222222                11122211 12467889999998762 33332  22


Q ss_pred             HHHHHHHHhc---cCCCHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhcccC
Q psy3716          82 LMEIMEVITN---HLSDQEEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEG  158 (436)
Q Consensus        82 l~~i~~~v~~---~~~d~~~aL~~L~~l~~~l~~~~ea~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~~~~  158 (436)
                      +...|..+..   +-..|.-.++.+.+...++.+.....--+..-+....|+     .+++....+.++.----+..-+.
T Consensus       101 f~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~L~-----ak~y~~~~p~ld~divei~~~n~  175 (422)
T KOG2582|consen  101 FFPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLCLE-----AKDYASVLPYLDDDIVEICKANP  175 (422)
T ss_pred             HHHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHHHH-----hhcccccCCccchhHHHHhccCC
Confidence            3333433332   223666667788887777765443211111222233444     44554444433311111111111


Q ss_pred             hhHHHHHHHHHHHHHHH-----HhhcHHHHHHHHHHHhccCCCCCCChhHHHHHHH-H-HHHHHhcCCCCCCCchhccCc
Q psy3716         159 VTAIHSRFYLVASTLYR-----KQAKLSLYYRTALRYLGCVDLNDLTASDQVQHAF-L-IGLAALLADSVYNIGELLAHP  231 (436)
Q Consensus       159 ~~~v~~~~y~~~a~~~k-----~~~~~~~~Y~~~L~yL~~~~~~~l~~~e~~~~A~-~-l~iaALl~~~iynFgeLl~~p  231 (436)
                        -.+.+++.. ..||-     ..++++.   ....|=.|+.....+....-.-|| . +.++-++.-.++...+=-..-
T Consensus       176 --h~~~k~fL~-Y~yYgg~iciglk~fe~---Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~  249 (422)
T KOG2582|consen  176 --HLDPKYFLL-YLYYGGMICIGLKRFER---ALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQN  249 (422)
T ss_pred             --CCCHHHHHH-HHHhcceeeeccccHHH---HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhh
Confidence              122222221 11221     1223222   222232333222222222222222 2 333333334454443322222


Q ss_pred             ccccccCCCchhHHHHHHHHhcCChhHHHhhhhh-hhc-----CchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHH
Q psy3716         232 ILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQ-WSA-----MNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFA  305 (436)
Q Consensus       232 ~v~~L~~t~~~wl~~LL~~f~~Gdl~~f~~~~~~-~~~-----~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~  305 (436)
                      +....+. --....+++++++.+...+.+.+..+ |+.     +..|....-.-.-|=+++.|....       -+++.+
T Consensus       250 ~~r~~K~-ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~av~sl~k~nI~rltktF-------~sLsL~  321 (422)
T KOG2582|consen  250 AGRFFKP-MSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQAVSSLYKKNIQRLTKTF-------LSLSLS  321 (422)
T ss_pred             hHHhccc-CCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHH
Confidence            2222222 11137899999999998887776433 222     233444444445666777777754       269999


Q ss_pred             HHHHHhCC-ChhhHHHHHHHHHhCCcccccccCCccEEEEEe
Q psy3716         306 EISEAAQL-PLIEVEFLIIKALALGLVKGHIDQVDESFNVTW  346 (436)
Q Consensus       306 ~Ia~~l~i-~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtw  346 (436)
                      +||+..++ +.+|||..|+.-|..|-|-..||   |-|..+.
T Consensus       322 dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~  360 (422)
T KOG2582|consen  322 DIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTD  360 (422)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEec
Confidence            99998888 56899999999999999999999   5555543

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=93.14  E-value=0.48  Score=42.19  Aligned_cols=107  Identities=20%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             HHHhcCCCCCCCchhccCccccccc-CCCchhHHHHHHHHhcCChhHHHhhhhhhhcCchhhhhHHHHHHHHHH--HHHH
Q psy3716         213 LAALLADSVYNIGELLAHPILDSLQ-QTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKANENKLSQKIAL--LCLM  289 (436)
Q Consensus       213 iaALl~~~iynFgeLl~~p~v~~L~-~t~~~wl~~LL~~f~~Gdl~~f~~~~~~~~~~~~L~~~~~~l~~KirL--laL~  289 (436)
                      +.+|...++.+|.-++..-.-...+ +++..-+..|.+.+-.|++.+|-......+-.|.+......+..+||-  ..++
T Consensus        12 l~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iR~~i~~~i   91 (143)
T PF10075_consen   12 LKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDTIRERIAHLI   91 (143)
T ss_dssp             HHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555554444322112222 245556889999999999999887544321123444444444555554  4445


Q ss_pred             HHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHH
Q psy3716         290 ELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKA  325 (436)
Q Consensus       290 ~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikA  325 (436)
                      +.++      .+|+.+.+++-||++.+|++.++.+-
T Consensus        92 ~~aY------~sIs~~~la~~Lg~~~~el~~~~~~~  121 (143)
T PF10075_consen   92 SKAY------SSISLSDLAEMLGLSEEELEKFIKSR  121 (143)
T ss_dssp             HHH-------SEE-HHHHHHHTTS-HHHHHHHHHHH
T ss_pred             HHHH------hHcCHHHHHHHhCCCHHHHHHHHHHc
Confidence            5554      58999999999999999999998774

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>KOG1497|consensus

Probab=92.25  E-value=0.13  Score=52.10  Aligned_cols=49  Identities=16%  Similarity=0.266  Sum_probs=45.4

Q ss_pred             cccHHHHHHHcCCChhhHHHHHHHHHhcccceeecccccceEEEeeecc
Q psy3716         367 QLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQP  415 (436)
Q Consensus       367 ~~sf~~i~~~~~~~~~~ve~lvmka~s~~li~g~idqv~~~v~~~wv~p  415 (436)
                      .+||++.++..++|.+.+|..+-..++.|=+.|+|||.+|.+|+--+.|
T Consensus       317 nisf~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~  365 (399)
T KOG1497|consen  317 NISFEELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREE  365 (399)
T ss_pred             hccHHHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecchhh
Confidence            4999999999999999999999999999999999999999999875433

>KOG2072|consensus

Probab=90.72  E-value=35  Score=38.95  Aligned_cols=204  Identities=18%  Similarity=0.167  Sum_probs=120.5

Q ss_pred             CCChHHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHhccC-CC-CCCChhHHHHHHHHH
Q psy3716         136 PGSLDEVEKLIDEIELLVND--IEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCV-DL-NDLTASDQVQHAFLI  211 (436)
Q Consensus       136 ~~~l~~~~~~L~~~~~~L~~--~~~~~~v~~~~y~~~a~~~k~~~~~~~~Y~~~L~yL~~~-~~-~~l~~~e~~~~A~~l  211 (436)
                      ++-..++..-++.+..++.-  -...++..+.||.=.+..+=..|++----..+++|-..+ +. ..++.++.+..|-..
T Consensus       245 lELWQEAyrSiEDIhgLm~lSKrtPkp~~laNYY~KL~~VF~~sgn~LfHAaAw~k~f~l~k~~~K~~Tqde~q~~as~V  324 (988)
T KOG2072|consen  245 LELWQEAYRSIEDIHGLMKLSKRTPKPSTLANYYEKLAKVFWKSGNPLFHAAAWLKLFKLYKNMNKNLTQDELQRMASRV  324 (988)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45567888888888877752  222357889999988888887887532222233333333 22 357899999999999


Q ss_pred             HHHHhcCCCCCC---CchhccCcccccccCCCchhHHH------------HHHHHh-cCC-------hhHHHh-------
Q psy3716         212 GLAALLADSVYN---IGELLAHPILDSLQQTPNAWLVE------------LLRAFN-AGD-------IEKFEL-------  261 (436)
Q Consensus       212 ~iaALl~~~iyn---FgeLl~~p~v~~L~~t~~~wl~~------------LL~~f~-~Gd-------l~~f~~-------  261 (436)
                      .+|||.-|-...   ++-++..+..-   -..+.-|..            ||.-.. .|-       +.+.-+       
T Consensus       325 lLaaLSIP~~~~~~~~~r~~e~e~~~---~ek~~rla~LL~L~~~PTR~~ll~e~v~~gV~~~v~qe~kdLY~iLEveF~  401 (988)
T KOG2072|consen  325 LLAALSIPIPDARSDSARLIEIEDIG---KEKNLRLANLLGLPAPPTRKGLLKEAVREGVLSKVDQEVKDLYNILEVEFH  401 (988)
T ss_pred             HHHHhcCCCCCcccccccccccccch---hhHHHHHHHHhCCCCCccHHHHHHHHHHhccHhhhhHHHHHHHHHHHhcCC
Confidence            999999873332   22233332220   001111111            111111 111       111111       


Q ss_pred             ----------hhhhhhcCchhhhhHHHHHHHHHHHHHHHHHhhcCCCCcccCHHHHHHHhC-CChhhHHHHHHHHHhCCc
Q psy3716         262 ----------MRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQ-LPLIEVEFLIIKALALGL  330 (436)
Q Consensus       262 ----------~~~~~~~~~~L~~~~~~l~~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~-i~~~eVE~lvikAi~~gL  330 (436)
                                +...+.+.|....+.+.| +++.++-|+.-++..   ..+|+|+.+.+-.- .+.-++|.++|.|-..+.
T Consensus       402 PL~l~k~lq~ll~~ls~~~~~~QYI~sL-q~v~~~RllqQvSqi---Y~sIs~~~l~~La~F~~~~~lEk~~v~a~k~~~  477 (988)
T KOG2072|consen  402 PLKLCKKLQPLLDKLSESPDKSQYIPSL-QDVIILRLLQQVSQI---YESISFERLYKLAPFFSAFELEKLLVEAAKHND  477 (988)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccccchhH-HHHHHHHHHHHHHHH---HHHHhHHHHHHHHhhcCHHHHHHHHHHHHhccc
Confidence                      111223334444444444 334444444434332   35799988887654 488899999999999999


Q ss_pred             ccccccCCccEEEEEe
Q psy3716         331 VKGHIDQVDESFNVTW  346 (436)
Q Consensus       331 I~G~IDQv~~~v~vtw  346 (436)
                      +.-+||-..++|.+..
T Consensus       478 v~iriDH~~~~v~Fgs  493 (988)
T KOG2072|consen  478 VSIRIDHESNSVSFGS  493 (988)
T ss_pred             eeEEeccccceeeecc
Confidence            9999999999998875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=90.01  E-value=11  Score=33.10  Aligned_cols=128  Identities=16%  Similarity=0.145  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHhhccCchhHHHHHHHHhccCCCHHHHHHH
Q psy3716          23 EISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELRDLYHKFVISFETKINPVSLMEIMEVITNHLSDQEEALVL  102 (436)
Q Consensus        23 ~~~~~~~~l~~l~~~KLWhQLT~~l~~~~~~p~~~~~~~~~~ly~~fI~~f~~kin~l~l~~i~~~v~~~~~d~~~aL~~  102 (436)
                      +-+..|..+...+..+=|..+...+..|+.+..-   ..    |..+.        .+.++.+..    .-.+.++|.+.
T Consensus        10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~---s~----ya~~A--------~l~lA~~~~----~~g~~~~A~~~   70 (145)
T PF09976_consen   10 QASALYEQALQALQAGDPAKAEAAAEQLAKDYPS---SP----YAALA--------ALQLAKAAY----EQGDYDEAKAA   70 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---Ch----HHHHH--------HHHHHHHHH----HCCCHHHHHHH
Confidence            4555666666666666666666666666655311   10    11110        112233332    23589999999


Q ss_pred             HHHHHHhhcCCcchhHHHHHHHHHHhhccCCCCCCChHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHhhcHHH
Q psy3716         103 LQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTLYRKQAKLSL  182 (436)
Q Consensus       103 L~~l~~~l~~~~ea~~~~~~~i~~~~l~~~~~~~~~l~~~~~~L~~~~~~L~~~~~~~~v~~~~y~~~a~~~k~~~~~~~  182 (436)
                      |+.+.+.- ++++..-.+.+.+|.+.+.     .|+++++...|+.+..        ......++.+..+.|...|++.+
T Consensus        71 l~~~~~~~-~d~~l~~~a~l~LA~~~~~-----~~~~d~Al~~L~~~~~--------~~~~~~~~~~~Gdi~~~~g~~~~  136 (145)
T PF09976_consen   71 LEKALANA-PDPELKPLARLRLARILLQ-----QGQYDEALATLQQIPD--------EAFKALAAELLGDIYLAQGDYDE  136 (145)
T ss_pred             HHHHHhhC-CCHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHhccC--------cchHHHHHHHHHHHHHHCCCHHH
Confidence            99988865 4444455667778889998     9999999888865221        23445567778888888888766


Q ss_pred             H
Q psy3716         183 Y  183 (436)
Q Consensus       183 ~  183 (436)
                      .
T Consensus       137 A  137 (145)
T PF09976_consen  137 A  137 (145)
T ss_pred             H
Confidence            3

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=88.40  E-value=0.66  Score=36.22  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=34.3

Q ss_pred             HHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCccccc
Q psy3716         286 LCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGH  334 (436)
Q Consensus       286 laL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~  334 (436)
                      ..|.+....+    +.+|+++||.++++|++.||.++=.-+..|.|+-.
T Consensus         3 ~~i~~~l~~~----~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~   47 (69)
T PF09012_consen    3 QEIRDYLRER----GRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKV   47 (69)
T ss_dssp             HHHHHHHHHS-----SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEE
T ss_pred             HHHHHHHHHc----CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence            3445544443    68999999999999999999999999999998843

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=85.43  E-value=11  Score=34.93  Aligned_cols=100  Identities=17%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCchhcc-CcccccccCCCchhHHHHHHHHhcCChhHHHhhhhhhhcCchhhhh-HHHHHHHH
Q psy3716         206 QHAFLIGLAALLADSVYNIGELLA-HPILDSLQQTPNAWLVELLRAFNAGDIEKFELMRPQWSAMNDIKAN-ENKLSQKI  283 (436)
Q Consensus       206 ~~A~~l~iaALl~~~iynFgeLl~-~p~v~~L~~t~~~wl~~LL~~f~~Gdl~~f~~~~~~~~~~~~L~~~-~~~l~~Ki  283 (436)
                      =.++.+ +..+...+.-.|...+. .|. .-+.++...-..++..++..||+..|-+...+ .+.|.+... .+....+|
T Consensus       101 f~~y~l-L~~l~~~~~~~~~~~l~~l~~-~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~-~~~~~l~~~l~~~~~~~i  177 (204)
T PF03399_consen  101 FIAYYL-LYLLCQNNIPDFHMELELLPS-EILSSPYIQFALELCRALMEGNYVRFFRLYRS-KSAPYLFACLMERFFNRI  177 (204)
T ss_dssp             HHHHHH-HHTT-T---THHHHHHTTS-H-HHHTSHHHHHHHHHHHHH--TTHHHHHHHHT--TTS-HHHHHHHGGGHHHH
T ss_pred             HHHHHH-HHHHHcccchHHHHHHHHCch-hhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-cCCChHHHHHHHHHHHHH
Confidence            334444 44554443444443322 221 11233344556789999999999999887622 233444322 33467899


Q ss_pred             HHHHHHHHHhhcCCCCcc-cCHHHHHHHhC
Q psy3716         284 ALLCLMELAFKKIPGSHQ-LSFAEISEAAQ  312 (436)
Q Consensus       284 rLlaL~~L~~~~p~~~r~-isf~~Ia~~l~  312 (436)
                      |..+|-.++.+-    +. +|.+.+++-|+
T Consensus       178 R~~al~~i~~ay----~~~i~l~~l~~~L~  203 (204)
T PF03399_consen  178 RLRALQSISKAY----RSSIPLSFLAELLG  203 (204)
T ss_dssp             HHHHHHHHHHHS-----T-EEHHHHHHHTT
T ss_pred             HHHHHHHHHHHc----CCCCCHHHHHHHcC
Confidence            999999988653    45 88888887765

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>KOG1464|consensus

Probab=85.02  E-value=0.64  Score=46.48  Aligned_cols=51  Identities=24%  Similarity=0.371  Sum_probs=41.1

Q ss_pred             cccCCcccccHHHHHHHcCCChhhHHHHHHHHHhcccceeecccccceEEEee
Q psy3716         360 KKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTW  412 (436)
Q Consensus       360 lr~~~~r~~sf~~i~~~~~~~~~~ve~lvmka~s~~li~g~idqv~~~v~~~w  412 (436)
                      ++|-..-.++|  |++++++|..|||+|+..|+=-.=|.|+||||++.+...-
T Consensus       359 IkPYt~i~Ipf--is~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~  409 (440)
T KOG1464|consen  359 IKPYTNIGIPF--ISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDK  409 (440)
T ss_pred             hccccccCchh--hHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCc
Confidence            44443334555  9999999999999999999999999999999998765443

>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues

Probab=84.43  E-value=1.9  Score=40.76  Aligned_cols=85  Identities=15%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEeccccccccchhhccccC
Q psy3716         284 ALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIP  363 (436)
Q Consensus       284 rLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l~Qi~~lr~~  363 (436)
                      -|-.+++.+..+    +.+...++|.+.+++..+|-.-|-.....|.|.|-||.-.+.++||----.-++    .|++..
T Consensus       100 lL~~Fi~yIK~~----Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~eE~~~va----~fi~~r  171 (188)
T PF09756_consen  100 LLQEFINYIKEH----KVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEEEMEAVA----KFIKQR  171 (188)
T ss_dssp             HHHHHHHHHHH-----SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE--------------------
T ss_pred             HHHHHHHHHHHc----ceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHHHHHHHH----HHHHHc
Confidence            566677777654    799999999999999999999999999999999999998877777633222211    122221


Q ss_pred             CcccccHHHHHHHcC
Q psy3716         364 GSHQLSFAEISEAAQ  378 (436)
Q Consensus       364 ~~r~~sf~~i~~~~~  378 (436)
                       .| +|..++++.|+
T Consensus       172 -GR-vsi~el~~~~N  184 (188)
T PF09756_consen  172 -GR-VSISELAQESN  184 (188)
T ss_dssp             ---------------
T ss_pred             -CC-ccHHHHHHHHH
Confidence             23 48888888775

They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=84.25  E-value=2.2  Score=31.30  Aligned_cols=46  Identities=26%  Similarity=0.290  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCccc
Q psy3716         284 ALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVK  332 (436)
Q Consensus       284 rLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~  332 (436)
                      |-+.+++.....+   +.++..+||+++++|..-|-.++-.-...|+|+
T Consensus         4 ral~iL~~l~~~~---~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~   49 (52)
T PF09339_consen    4 RALRILEALAESG---GPLTLSEIARALGLPKSTVHRLLQTLVEEGYVE   49 (52)
T ss_dssp             HHHHHHHCHHCTB---SCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHcCC---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence            5567777665543   568999999999999999999999988888875

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms

Probab=83.08  E-value=3  Score=41.64  Aligned_cols=115  Identities=16%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             cccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEEeccccccccchhhccccCCcccccHHHHHHHcCC
Q psy3716         300 HQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLAFKKIPGSHQLSFAEISEAAQL  379 (436)
Q Consensus       300 r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vtwv~pRvL~l~Qi~~lr~~~~r~~sf~~i~~~~~~  379 (436)
                      +.++.+++|+..++|.+=+-..++.+..-++|+|++|+. ...+-+|+..   -...+...-.+-.|..++..+..++++
T Consensus       129 G~vsi~eLa~~~~Lp~efl~~~li~~~lg~~I~g~~d~~-~lyT~ayv~r---~ka~iRG~l~a~T~Pt~l~~l~~~~~~  204 (272)
T PF09743_consen  129 GQVSISELAKQYDLPSEFLKEELISKRLGKIIKGRLDGD-VLYTEAYVAR---QKARIRGALSAITRPTPLSSLLKRYGF  204 (272)
T ss_pred             CeEeHHHHHHhcCCcHHHHHHHHhhhhcCcceeEEEeCC-EEecHHHHHH---HHHHHHHHHhcCccceEHHHHHHHhCC
Confidence            689999999999999988887889998899999999998 1112122221   122333333445688999999999999


Q ss_pred             ChhhHHHHHHHHHhcccceeecccccceEEEeeecccccchhhhhH
Q psy3716         380 PLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQVFW  425 (436)
Q Consensus       380 ~~~~ve~lvmka~s~~li~g~idqv~~~v~~~wv~pr~l~~~q~~~  425 (436)
                      +..=+-.++=.-...|=+.|+|-.       .-..|-+..+.|-.+
T Consensus       205 ~~~l~~~il~~Li~~~~l~G~i~G-------~~yvP~iy~~~q~~~  243 (272)
T PF09743_consen  205 EEKLFQSILEELIKSGELPGSIVG-------ASYVPDIYSQAQQEW  243 (272)
T ss_pred             cHHHHHHHHHHHHhcCcceEEEEC-------CEEechHHHHHHHHH
Confidence            977666666666677888888877       444577777776443

Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=82.55  E-value=4.1  Score=32.77  Aligned_cols=60  Identities=20%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccccccCCccEEEEE
Q psy3716         283 IALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVT  345 (436)
Q Consensus       283 irLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G~IDQv~~~v~vt  345 (436)
                      ..+-.|+-|+....  .+.++.++||+.+++|..-|+..+=+.-..|+|+.+ -..++-+...
T Consensus         9 ~Al~~l~~la~~~~--~~~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~-~G~~GGy~L~   68 (83)
T PF02082_consen    9 YALRILLYLARHPD--GKPVSSKEIAERLGISPSYLRKILQKLKKAGLIESS-RGRGGGYRLA   68 (83)
T ss_dssp             HHHHHHHHHHCTTT--SC-BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEE-TSTTSEEEES
T ss_pred             HHHHHHHHHHhCCC--CCCCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEec-CCCCCceeec
Confidence            44556666665432  345999999999999999999999999999999764 2444444443

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]

Probab=81.55  E-value=11  Score=34.42  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=25.1

Q ss_pred             ccCHHHHHHHhCCChhhHHHHHHHHHh
Q psy3716         301 QLSFAEISEAAQLPLIEVEFLIIKALA  327 (436)
Q Consensus       301 ~isf~~Ia~~l~i~~~eVE~lvikAi~  327 (436)
                      .+||++||+.+++|..-|...+-+|..
T Consensus       143 gls~~EIA~~l~i~~~tVks~l~ra~~  169 (182)
T COG1595         143 GLSYEEIAEILGISVGTVKSRLHRARK  169 (182)
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            589999999999999999999998865

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=81.51  E-value=4.3  Score=35.83  Aligned_cols=51  Identities=29%  Similarity=0.410  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCcccCHHHHHHHhCCChhhHHHHHHHHHhCCcccc
Q psy3716         281 QKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKG  333 (436)
Q Consensus       281 ~KirLlaL~~L~~~~p~~~r~isf~~Ia~~l~i~~~eVE~lvikAi~~gLI~G  333 (436)
                      .+..+.+++.||+...  .+.++-++||+.+++|..-|+..+=+.-..|+|..
T Consensus         7 ~~YAl~~l~~La~~~~--~~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s   57 (135)
T TIGR02010         7 GRYAVTAMLDLALNAE--TGPVTLADISERQGISLSYLEQLFAKLRKAGLVKS   57 (135)
T ss_pred             HHHHHHHHHHHHhCCC--CCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEE
Confidence            4556788888887532  35799999999999999999999999999999974

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	436
4b4t_O	393	Near-Atomic Resolution Structural Model Of The Yeas		2e-40
4b4t_O	393	Near-Atomic Resolution Structural Model Of The Yeas		3e-12

>pdb|4B4T|O Chain O, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 393

Iteration: 1
 Score =  163 bits (412), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 197/370 (53%), Gaps = 33/370 (8%)
Query: 8   TVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEGELR-DLY 66
           T+  T + EA   +P +   +   E+ Y +KLW QL+ ++  F  +    K   LR  LY
Sbjct: 9   TILSTLRMEA---DPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA---KSTPLRLRLY 62
Query: 67  HKFVISFETKINPVSLMEIMEVITNHLSDQEEALVLL-------QSFEDKVKNNLEAKSL 119
             FV  F  KIN +S+++ +        D +E+L  L       Q  + K + N  +K  
Sbjct: 63  DNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDH 122
Query: 120 --------CKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVAS 171
                    +I +  ++ N        LD++EK +D+ + +         I + FY   S
Sbjct: 123 GDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP------LRITNSFYSTNS 176
Query: 172 TLYRKQAKLSLYYRTALRYLGCVDLN-DLTASDQVQHAFLIGLAALLADSVYNIGELLAH 230
             ++ +   + +Y T+L YL  ++ +  +T +++ Q A+ + ++ALL D +YN GELL H
Sbjct: 177 QYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHH 236
Query: 231 PILDSLQQTPNA-WLVELLRAFNAGDIEKFE-LMRPQWSAMNDIKANENKLSQKIALLCL 288
           PI++++    N  WL +LL A   GD +KF+ L++ Q S +  +  +E+ L QKI L+ L
Sbjct: 237 PIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTL 296
Query: 289 MELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQ 348
           +E  F  +     LSF +IS+A  LP   VE L+++A++LGL+KG IDQV+E   ++WVQ
Sbjct: 297 IETVF--VKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQ 354
Query: 349 PRVLSKDQLA 358
           PR++S DQ+ 
Sbjct: 355 PRIISGDQIT 364

>pdb|4B4T|O Chain O, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 393

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 44/56 (78%)
Query: 368 LSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQV 423
           LSF +IS+A  LP   VE L+++A++LGL+KG IDQV+E   ++WVQPR++S DQ+
Sbjct: 308 LSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQI 363

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	436
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	1e-29
3chm_A	169	COP9 signalosome complex subunit 7; heat/ARM repea	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	2e-06

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169

 Score =  112 bits (281), Expect = 1e-29
 Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 12/165 (7%)

Query: 196 LNDLTASDQVQHAFLIGLAALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGD 255
           L    ++ + +    + + A    S++   E+LA P +  L+ T ++  ++LLR F  G 
Sbjct: 14  LVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGT 73

Query: 256 IEKFELMRPQWSAMNDIKANENKLSQKIALLCLMELAFKKIPGSHQLSFAEISEAAQLPL 315
              ++    +   ++           K+  L ++ LA      +  L +  +     +  
Sbjct: 74  WGDYKCNATRLPHLSP------DQILKLKQLTVLTLAES----NKVLPYDTLMVELDVSN 123

Query: 316 IE--VEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQLA 358
           +    +FLI + +  G+V+G +DQ+   F V +   R L   QL 
Sbjct: 124 VRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLG 168

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana} Length = 169

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 368 LSFAEISEAAQLPLIE--VEFLIIKALALGLVKGHIDQVDESFNVTWVQPRVLSKDQV 423
           L +  +     +  +    +FLI + +  G+V+G +DQ+   F V +   R L   Q+
Sbjct: 110 LPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQL 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 4e-08
 Identities = 43/283 (15%), Positives = 83/283 (29%), Gaps = 74/283 (26%)

Query: 16  EAYSKNP-----------EISAQWLNLEELYNKKLWH--QLTLAVLAFVQNPAIQKEGEL 62
           E  + NP           +  A W N + +   KL    + +L VL     PA     E 
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL----EPA-----EY 371

Query: 63  RDLYHKFVISFE--TKINPVSLMEIM--EVITNHLSDQEEALVLLQSFEDKVKNNLEAKS 118
           R ++ +  + F     I P  L+ ++  +VI +   D    +  L  +    K   E  S
Sbjct: 372 RKMFDRLSV-FPPSAHI-PTILLSLIWFDVIKS---DVMVVVNKLHKYSLVEKQPKE--S 424

Query: 119 LCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVN-DIEGVTAIHSRFY--------LV 169
              I    + +    +   +L     ++D   +    D + +   +   Y        L 
Sbjct: 425 TISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 170 ASTLYRKQAKLSLYY------RTALRYLGCV---------DLNDL-------TASDQVQH 207
                 +     + +         +R+              L  L         +D    
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542

Query: 208 AFLIGLAALLADSVYNIGE-LLAHPILDSLQ---QTPNAWLVE 246
             +      + D +  I E L+     D L+      +  + E
Sbjct: 543 RLV----NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 4e-07
 Identities = 64/405 (15%), Positives = 130/405 (32%), Gaps = 114/405 (28%)

Query: 6   DPTVYLTAKQEAYSKNPEISAQWLNLEELYNKKLWHQLTLAVLAFVQNPAIQKEG----- 60
              +Y+  +   Y+ N   +   ++  + Y      +L  A+L       +  +G     
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-----LKLRQALLELRPAKNVLIDGVLGSG 162

Query: 61  -------ELRDLYHKFVISFETKI---------NPVSLMEIMEVITNHL-------SDQE 97
                        +K     + KI         +P +++E+++ +   +       SD  
Sbjct: 163 KTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 98  EALVL-LQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEV--EKLIDEIEL--- 151
             + L + S + +++  L++K     L   ++          L  V   K  +   L   
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL---LV----------LLNVQNAKAWNAFNLSCK 267

Query: 152 -LV--------NDIEGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLGCVDLNDLTAS 202
            L+        + +   T  H      + TL   +   SL     L+YL C    DL   
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLL----LKYLDC-RPQDLPRE 321

Query: 203 DQVQHAFLIGL-AALLADSV--------YNIGELLAHPILDSL-QQTPNAWLVELLRAFN 252
               +   + + A  + D +         N  + L   I  SL    P     E  + F 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNC-DKLTTIIESSLNVLEPA----EYRKMF- 375

Query: 253 AGDIEKFELMR-----PQ------WSAM--NDIKANENKLSQKIALLCLMELAFKK---- 295
               ++  +       P       W  +  +D+    NKL +      L+E   K+    
Sbjct: 376 ----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----SLVEKQPKESTIS 427

Query: 296 IPGSHQLSFAEISEAAQL--PLIEVEFLIIKALAL-GLVKGHIDQ 337
           IP  +     ++     L   +++  + I K      L+  ++DQ
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 70/455 (15%), Positives = 123/455 (27%), Gaps = 148/455 (32%)

Query: 62  LRDLYHKFVISFETKINPVSLMEIM---EV--ITNHLSDQEEALVLLQSFEDKVKNNLEA 116
           L      FV +F+ K        I+   E+  I          L L  +   K +  ++ 
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ- 80

Query: 117 KSLCKILQA--QMIMNKDADKP-GSLDEVEKLIDEIELLVNDIEGVTAIHSRFYLVASTL 173
           K + ++L+   + +M+    +           I++ + L ND +     +         +
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---------V 131

Query: 174 YRKQAKLSLYYRTALRYL------------GC---VDLNDLTASDQVQHAF--------- 209
            R Q  L L  R AL  L            G        D+  S +VQ            
Sbjct: 132 SRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 210 ---------LIGLAALL----------ADSVYNI-----------GELLAHP-------I 232
                    L  L  LL          +D   NI             LL          +
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 233 LDSLQQTPNAWLVELLRAFNAG--------DIEKFELMRPQWSAMNDIKANENKLSQKIA 284
           L       N    +   AFN            +  + +    +    +  +   L+    
Sbjct: 250 LL------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 285 LLCLMELAFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQVDESFNV 344
                 L   K        + +      LP    E L      L +    I +       
Sbjct: 304 K----SL-LLK--------YLDCR-PQDLP---REVLTTNPRRLSI----IAESIRDGLA 342

Query: 345 TWVQPRVLSKDQLAFKKIPGS-HQLSFAEISEAAQLPLIEVEFLIIKALALGLVKGHIDQ 403
           TW   + ++ D+L    I  S + L  AE  +          F     L++         
Sbjct: 343 TWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKM---------F---DRLSV--------- 380

Query: 404 VDESFNV-TWVQPRVLSKDQVFWS-LEETVATEVL 436
               F     +   +LS   + W  + ++    V+
Sbjct: 381 ----FPPSAHIPTILLS---LIWFDVIKSDVMVVV 408

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 35/262 (13%), Positives = 88/262 (33%), Gaps = 20/262 (7%)

Query: 97  EEALVLLQSFEDKVKNNLEAKSLCKILQAQMIMNKDADKPGSLDEVEKLIDEIELLVNDI 156
            EAL L      ++K   +   L ++   +           +L +    +       N I
Sbjct: 116 TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL---SNLPKARAALTSARTTANAI 172

Query: 157 EGVTAIHSRFYLVASTLYRKQAKLSLYYRTALRYLG--CVDLNDLTASDQVQHAFLIGLA 214
                +     L +  L+    +    ++TA  Y        + + +   +     + L 
Sbjct: 173 YCPPKVQGALDLQSGILHAADER---DFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC 229

Query: 215 ALLADSVYNIGELLAHPILDSLQQTPNAWLVELLRAFNAGDIEKFE--LMRPQWSAMND- 271
            ++     ++ +L++  +  +        +  +  A +   +  F+  L   +     D 
Sbjct: 230 KIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDV 289

Query: 272 -IKANENKLSQKIALLCLMEL--AFKKIPGSHQLSFAEISEAAQLPLIEVEFLIIKALAL 328
            ++A+   L   +    L  +   + ++        A ++E+ QLP+ +VE  + + +  
Sbjct: 290 IVQAHLGTLYDTMLEQNLCRIIEPYSRV------QVAHVAESIQLPMPQVEKKLSQMILD 343

Query: 329 GLVKGHIDQVDESFNVTWVQPR 350
               G +DQ +    V    P 
Sbjct: 344 KKFSGILDQGEGVLIVFEETPV 365

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005