Psyllid ID: psy3762

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKTKN
ccccccccccccccccEEEEEEEEccccccccEEEEEcccccccEEEEEccccHHHHHHHHHccccEEEEEEEEEEEccccccccccccccEEEEEEEEEEEEccccccccccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccEEEccccHHHHHHHHHHcccHHHHHHHcccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccHHHHHHcccccccccccHHccccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccccccEEcccccccccccccHHHHHccccccccccccEEEccEEccccccccccHHHHHHHHHHccccHHHHHHHHcHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHccccccccccc
cccccHHHccHHHcccEEEEEEEEEEEEEEccEEEEEEEEccEEEEEEEccccHHHHHHHHHHcccEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEccccccccccccccccHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccEccccccccccEEEccccccEEEEcccccHHHHHHHHHccccEEEEEEEEEcccccccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccEEEHHHHHHHHcccccccccccccEEcHHHHccccccHHHHccEEEccEEEEEEccccccccHHHHHHHHHHHHHHccccEEEEEEccHHccccccccHHHHcccHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHccccccccccccccccccEEEEccEcEccccccccccEcccccEcEcHHHccHHHHcHHHcEEcEEEEEEccEEEEEEEEEcccHHHHHHHHHHHccccccHHHHcHHHHHHHccccccEEEEEEEHHHHHHHHHccccHHHHccccccccccEccccEcEEccHHHHHHHcEEEccccc
mrthycgnITEKLLDQVISLCGWVhrkrnhggiifidlrdytglvqivfdpndikIYKIAKIIRNEFCLQIIGKvcsrpnktnntnlisGNIEILCRELKILnssitlpfqideknilevTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFldskkfieietpilskstpegardylvpsrinpgeffalpqspqLFKQLLMVANFDRYYQITKcfrdedlrsdrqpeftqidcetsfMNEEEIRNLFEEMIRVIFYKTlniklpnpfpviEWSTAIklygsdkpdmCIKLIFTDLtnimkdsdFKLFSKIANmkngriiglkipggfsisrnEINYYTQFVKTYGAKGLTYIKIHKISkefdglkspIIKYFNNLILEKIINkteaqngdiiflggdEKNIVNNFMSALRIKigysdfgkrnnilnnkwhplwvinfpmfkydkinnnwiarhhpftapkdgyedfiitnpEKIFSKAYDLIINGweigggsirihDAEIQKKIFKVLNIDNKIVKTQFGFLLnslkygapphggiafgLDRLITIMtgsksirdviafpktqsaqclltnapsivdekqLNELNILYKKTKN
mrthycgnitEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKvcsrpnktnntnlISGNIEILCRELKILNSSItlpfqideknilevTNLKYRVLYLRYKHmqknlrlrykVTMEVRKfldskkfieietpilskstpegaRDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCfrdedlrsdrqpeftqidcetsfmNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIskefdglksPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLtnapsivdekqlnelnilykktkn
MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKTKN
***HYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSK****GARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDL******EFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILY*****
MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYK****
MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKTKN
**THYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK***
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MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIAKIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKTKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query595 2.2.26 [Sep-21-2011]
A4G8X1599 Aspartate--tRNA ligase OS yes N/A 0.988 0.981 0.658 0.0
B1XWR8598 Aspartate--tRNA ligase OS yes N/A 0.986 0.981 0.610 0.0
Q8Y270605 Aspartate--tRNA ligase OS yes N/A 0.988 0.971 0.603 0.0
Q0KEG8602 Aspartate--tRNA ligase OS yes N/A 0.998 0.986 0.604 0.0
Q475W2602 Aspartate--tRNA ligase OS yes N/A 0.998 0.986 0.599 0.0
B2AH15602 Aspartate--tRNA ligase OS yes N/A 0.998 0.986 0.601 0.0
Q1LRG2602 Aspartate--tRNA ligase OS yes N/A 0.988 0.976 0.605 0.0
Q145N3599 Aspartate--tRNA ligase OS yes N/A 0.994 0.988 0.604 0.0
B2SX42599 Aspartate--tRNA ligase OS yes N/A 0.994 0.988 0.603 0.0
A2SEP2599 Aspartate--tRNA ligase OS yes N/A 0.986 0.979 0.607 0.0
>sp|A4G8X1|SYD_HERAR Aspartate--tRNA ligase OS=Herminiimonas arsenicoxydans GN=aspS PE=3 SV=1 Back     alignment and function desciption
 Score =  871 bits (2250), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/588 (65%), Positives = 491/588 (83%)

Query: 1   MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
           MRT YCG  +E LLDQ +SLCGWVHR+R+HGG+IFIDLRD  GLVQ+V DP+ + ++K A
Sbjct: 1   MRTQYCGLTSEALLDQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRVDVFKAA 60

Query: 61  KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV 120
           + +RNEFCL+I G V  RP  T N+NL SG IE+L  EL++LN S+T PFQ+D+ N+ E 
Sbjct: 61  EAVRNEFCLRITGIVRHRPEGTTNSNLTSGKIEVLAHELEVLNPSVTPPFQLDDDNLSET 120

Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
           T L +RVL LR   MQ NLRLRYKVTMEVRKFLD++ FI+IETP+L+KSTPEGARDYLVP
Sbjct: 121 TRLTHRVLDLRRPQMQNNLRLRYKVTMEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP 180

Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240
           SR+N G FFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLR+DRQPEFTQIDCETSFM
Sbjct: 181 SRVNAGHFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFM 240

Query: 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300
           NE+EIR+LFE MIR++F   LN++LPNPFPV++++TA+ +YGSDKPDM +KL FTDLT+I
Sbjct: 241 NEQEIRDLFEGMIRLVFKNCLNVELPNPFPVMDYATAMGMYGSDKPDMRVKLEFTDLTSI 300

Query: 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360
           MKD +FK+FS  ANM+NGR++GL++PGG ++ R+EI+ YTQFV  YGAKGL YIK+++ +
Sbjct: 301 MKDVEFKVFSGAANMENGRVVGLRVPGGGAMPRSEIDAYTQFVAIYGAKGLAYIKVNEKA 360

Query: 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDF 420
           K  DGL+SPI+K  ++  L KII  T AQ+GD+IF G D+  +VN+ + ALR+K+G+SDF
Sbjct: 361 KGRDGLQSPIVKNIHDEALAKIIEATGAQDGDLIFFGADKAKVVNDAIGALRVKVGHSDF 420

Query: 421 GKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKA 480
           GK+N + +++W PLWV++FPMF+YD+ +  W A HHPFTAPKDG+ED + TNP K  SKA
Sbjct: 421 GKKNGLFDDEWRPLWVVDFPMFEYDEDSQRWSATHHPFTAPKDGHEDLMETNPGKCLSKA 480

Query: 481 YDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAF 540
           YD+++NGWE+GGGS+RIH AE+Q K+F+ L I  +  + +FGFLL++L+YGAPPHGG+AF
Sbjct: 481 YDMVLNGWELGGGSVRIHRAEVQSKVFRALKISAEEAQLKFGFLLDALQYGAPPHGGLAF 540

Query: 541 GLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI 588
           GLDR++T+MTG++SIRDVIAFPKTQ AQCLLT APS VDEKQL EL+I
Sbjct: 541 GLDRIVTMMTGAESIRDVIAFPKTQRAQCLLTQAPSEVDEKQLRELHI 588

Herminiimonas arsenicoxydans (taxid: 204773)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2
>sp|B1XWR8|SYD_LEPCP Aspartate--tRNA ligase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|Q8Y270|SYD_RALSO Aspartate--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|Q0KEG8|SYD_CUPNH Aspartate--tRNA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|Q475W2|SYD_CUPPJ Aspartate--tRNA ligase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|B2AH15|SYD_CUPTR Aspartate--tRNA ligase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|Q1LRG2|SYD_RALME Aspartate--tRNA ligase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|Q145N3|SYD_BURXL Aspartate--tRNA ligase OS=Burkholderia xenovorans (strain LB400) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|B2SX42|SYD_BURPP Aspartate--tRNA ligase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=aspS PE=3 SV=1 Back     alignment and function description
>sp|A2SEP2|SYD_METPP Aspartate--tRNA ligase OS=Methylibium petroleiphilum (strain PM1) GN=aspS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
152979848601 aspartyl-tRNA synthetase [Janthinobacter 0.988 0.978 0.653 0.0
134096004599 aspartyl-tRNA synthetase [Herminiimonas 0.988 0.981 0.658 0.0
415921643630 Aspartyl-tRNA synthetase [Herbaspirillum 0.998 0.942 0.648 0.0
398837126601 aspartyl-tRNA synthetase [Herbaspirillum 0.998 0.988 0.646 0.0
409408795601 aspartyl-tRNA synthetase [Herbaspirillum 0.998 0.988 0.646 0.0
329906027601 Aspartyl-tRNA synthetase [Oxalobacterace 0.998 0.988 0.641 0.0
399018258601 aspartyl-tRNA synthetase [Herbaspirillum 0.998 0.988 0.643 0.0
300309541599 aspartyl-tRNA synthetase [Herbaspirillum 0.998 0.991 0.644 0.0
340785846600 aspartyl-tRNA synthetase [Collimonas fun 0.988 0.98 0.646 0.0
445494552602 aspartate-tRNA ligase AspS [Janthinobact 0.998 0.986 0.629 0.0
>gi|152979848|ref|YP_001354789.1| aspartyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi|151279925|gb|ABR88335.1| Aspartyl-tRNA synthetase [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/588 (65%), Positives = 493/588 (83%)

Query: 1   MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
           MRTHYCG  +E LLDQ +SLCGWVHR+R+HGG+IFIDLRD  GLVQ+V DP+ + ++K A
Sbjct: 3   MRTHYCGLTSEALLDQTVSLCGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRVDVFKAA 62

Query: 61  KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV 120
           + +RNEFCL+I G V SRP  T+N+NL SG IE+L  EL++LN+S+T PFQ+D+ N+ E 
Sbjct: 63  EAVRNEFCLRITGVVRSRPEGTSNSNLTSGKIEVLAHELEVLNASVTPPFQLDDDNLSET 122

Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
           T L +RVL LR   MQ NLRLRYKVTMEVRKFLD++ FI+IETP+L+KSTPEGARDYLVP
Sbjct: 123 TRLTHRVLDLRRPQMQNNLRLRYKVTMEVRKFLDAQGFIDIETPMLTKSTPEGARDYLVP 182

Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240
           SR+N G FFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLR+DRQPEFTQIDCETSFM
Sbjct: 183 SRVNAGHFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFM 242

Query: 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300
           NE+EIR+LFE MIR++F   LN+ LPNPFPV++++TA+ LYGSDKPDM +KL FTDLT+I
Sbjct: 243 NEQEIRDLFEGMIRLVFKNALNVDLPNPFPVMDYATAMGLYGSDKPDMRVKLAFTDLTSI 302

Query: 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360
           MKD +FK+FS  ANM+ GR++GL++PGG ++ R+EI+ YTQFV  YGAKGL YIK+++ +
Sbjct: 303 MKDVEFKVFSGAANMEGGRVVGLRVPGGGAMPRSEIDAYTQFVAIYGAKGLAYIKVNEKA 362

Query: 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDF 420
           K  DGL+SPI+K  ++  L KII  T A++GD+IF G D+  +VN+ + ALR+K+G+SDF
Sbjct: 363 KGRDGLQSPIVKNIHDEALAKIIEATGAEDGDLIFFGADKAKVVNDAIGALRVKVGHSDF 422

Query: 421 GKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKA 480
           GK++ + +++W PLWV++FPMF++D+ N  W A HHPFTAPKDG+ED + T+P K  +KA
Sbjct: 423 GKKSGLFDDEWRPLWVVDFPMFEFDEENQRWSATHHPFTAPKDGHEDLMETDPGKCIAKA 482

Query: 481 YDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAF 540
           YD+++NGWE+GGGS+RIH A++Q K+F+ L I  +  + +FGFLL++L+YGAPPHGG+AF
Sbjct: 483 YDMVLNGWELGGGSVRIHRADVQSKVFRALKIGAEEAQLKFGFLLDALQYGAPPHGGLAF 542

Query: 541 GLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI 588
           GLDR++T+MTG++SIRDVIAFPKTQ AQCLLT APS VDEKQL EL+I
Sbjct: 543 GLDRIVTMMTGAESIRDVIAFPKTQRAQCLLTQAPSEVDEKQLRELHI 590

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|134096004|ref|YP_001101079.1| aspartyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi|166225350|sp|A4G8X1.1|SYD_HERAR RecName: Full=Aspartate--tRNA ligase; AltName: Full=Aspartyl-tRNA synthetase; Short=AspRS gi|133739907|emb|CAL62958.1| Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|415921643|ref|ZP_11554557.1| Aspartyl-tRNA synthetase [Herbaspirillum frisingense GSF30] gi|407760783|gb|EKF69991.1| Aspartyl-tRNA synthetase [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|398837126|ref|ZP_10594438.1| aspartyl-tRNA synthetase [Herbaspirillum sp. YR522] gi|398209420|gb|EJM96095.1| aspartyl-tRNA synthetase [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|409408795|ref|ZP_11257230.1| aspartyl-tRNA synthetase [Herbaspirillum sp. GW103] gi|386432117|gb|EIJ44945.1| aspartyl-tRNA synthetase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|329906027|ref|ZP_08274328.1| Aspartyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] gi|327547359|gb|EGF32189.1| Aspartyl-tRNA synthetase [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|399018258|ref|ZP_10720440.1| aspartyl-tRNA synthetase [Herbaspirillum sp. CF444] gi|398101782|gb|EJL91987.1| aspartyl-tRNA synthetase [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|300309541|ref|YP_003773633.1| aspartyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi|300072326|gb|ADJ61725.1| aspartyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|340785846|ref|YP_004751311.1| aspartyl-tRNA synthetase [Collimonas fungivorans Ter331] gi|340551113|gb|AEK60488.1| Aspartyl-tRNA synthetase [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|445494552|ref|ZP_21461596.1| aspartate-tRNA ligase AspS [Janthinobacterium sp. HH01] gi|444790713|gb|ELX12260.1| aspartate-tRNA ligase AspS [Janthinobacterium sp. HH01] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query595
TIGR_CMR|CBU_1565590 CBU_1565 "aspartyl-tRNA synthe 0.984 0.993 0.517 1.8e-167
TIGR_CMR|SO_2433591 SO_2433 "aspartyl-tRNA synthet 0.983 0.989 0.516 3e-165
UNIPROTKB|Q9KSU0591 aspS "Aspartate--tRNA ligase" 0.988 0.994 0.491 7.3e-162
TIGR_CMR|VC_1166591 VC_1166 "aspartyl-tRNA synthet 0.988 0.994 0.491 7.3e-162
UNIPROTKB|P21889590 aspS "aspartyl-tRNA synthetase 0.988 0.996 0.493 1.4e-158
TIGR_CMR|CPS_2114601 CPS_2114 "aspartyl-tRNA synthe 0.983 0.973 0.487 6.7e-152
TIGR_CMR|CHY_2204592 CHY_2204 "aspartyl-tRNA synthe 0.969 0.974 0.471 1.9e-147
TIGR_CMR|BA_4632591 BA_4632 "aspartyl-tRNA synthet 0.968 0.974 0.458 3.7e-142
TIGR_CMR|GSU_1463594 GSU_1463 "aspartyl-tRNA synthe 0.969 0.971 0.471 3e-140
TIGR_CMR|CJE_0743583 CJE_0743 "aspartyl-tRNA synthe 0.963 0.982 0.468 7.4e-137
TIGR_CMR|CBU_1565 CBU_1565 "aspartyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
 Score = 1629 (578.5 bits), Expect = 1.8e-167, P = 1.8e-167
 Identities = 307/593 (51%), Positives = 425/593 (71%)

Query:     1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
             MRTHY   +   L+DQ I+LCGWVHR+R+HGG+IFIDLRD  GLVQ+V +P +  ++K+A
Sbjct:     1 MRTHYADKVDSSLIDQTITLCGWVHRRRDHGGLIFIDLRDREGLVQVVCNPTESTVFKVA 60

Query:    61 KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDE-KNILE 119
             + +RNE+ +++ GKV  RP  T N ++ SG +EI   ++ +LN S  LPF IDE + + E
Sbjct:    61 ESLRNEYVIKVTGKVHKRPEGTVNPHIPSGEVEIAASDITLLNKSKPLPFNIDEYQEVSE 120

Query:   120 VTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLV 179
                LK+R L LR   + + L++R  +  E+R+FLD + F++IETP+L+KSTPEGARDYLV
Sbjct:   121 EVRLKFRYLDLRRPEVAQRLKMRSYIIREIRRFLDERGFLDIETPMLTKSTPEGARDYLV 180

Query:   180 PSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSF 239
             PSR +PG+FFALPQSPQ+FK++LMVA FDRYYQI +CFRDEDLR+DRQPEFTQ+D E SF
Sbjct:   181 PSRTHPGQFFALPQSPQIFKEILMVAGFDRYYQIVRCFRDEDLRADRQPEFTQLDLEMSF 240

Query:   240 MNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTN 299
             + E++I+ L E MIR +F   LN+ LP+PFP I +  AIK YG+D+PD+   L   D+T+
Sbjct:   241 VEEKDIQQLMETMIRHLFSTFLNVPLPDPFPRITYDEAIKTYGTDRPDLRNPLTLVDVTD 300

Query:   300 IMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKI 359
             +MK  +FK+F + AN  +GRI  L++P G  +SR  I+ YTQFV  YGAKGL YIK+  I
Sbjct:   301 LMKSVEFKVFKEPANNPHGRIAVLRLPKGAELSRKAIDDYTQFVGIYGAKGLAYIKVENI 360

Query:   360 SKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSD 419
                  GL SPI+K+    ++ +I+ +T+AQ+GDI+F G D+  IVN  + ALR ++  +D
Sbjct:   361 DNGTGGLHSPILKFLPENVIAEILKRTQAQSGDILFFGADKAKIVNESLGALRDRL-CAD 419

Query:   420 FGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSK 479
                  N+   +W P+WV++FPMF  + + + W A HHPFTA ++   + +I NP  + S+
Sbjct:   420 L----NLYEGQWKPVWVVDFPMFDREDVGD-WQALHHPFTALQETDPEKVIANPGDVLSR 474

Query:   480 AYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIA 539
             AYD+++NG EIGGGSIRI+D  +Q  + KVL I  ++ + QFG LL +L++G+PP GGIA
Sbjct:   475 AYDMVLNGSEIGGGSIRINDIGMQYAVLKVLGISKEMAEAQFGHLLMALQFGSPPLGGIA 534

Query:   540 FGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK 592
             FGLDRL+ IMTG+ SIRDVIAFPKTQ+AQC LTNAP+ V+  QL  L +   K
Sbjct:   535 FGLDRLVAIMTGASSIRDVIAFPKTQTAQCPLTNAPAQVETLQLETLGLKVSK 587
GO:0004815 "aspartate-tRNA ligase activity" evidence=ISS
GO:0006422 "aspartyl-tRNA aminoacylation" evidence=ISS
TIGR_CMR|SO_2433 SO_2433 "aspartyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSU0 aspS "Aspartate--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1166 VC_1166 "aspartyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P21889 aspS "aspartyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2114 CPS_2114 "aspartyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2204 CHY_2204 "aspartyl-tRNA synthetase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4632 BA_4632 "aspartyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1463 GSU_1463 "aspartyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0743 CJE_0743 "aspartyl-tRNA synthetase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A1V745SYD_BURMS6, ., 1, ., 1, ., 1, 20.59491.00.9916yesN/A
Q7WR42SYD_BORBR6, ., 1, ., 1, ., 1, 20.59520.98820.9865yesN/A
A1WHI6SYD_VEREI6, ., 1, ., 1, ., 1, 20.59620.98650.9718yesN/A
Q39D20SYD_BURS36, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
Q62MP0SYD_BURMA6, ., 1, ., 1, ., 1, 20.59491.00.9949yesN/A
Q7W001SYD_BORPE6, ., 1, ., 1, ., 1, 20.59520.98820.9865yesN/A
A2S8L9SYD_BURM96, ., 1, ., 1, ., 1, 20.59491.00.9916yesN/A
C5CWX8SYD_VARPS6, ., 1, ., 1, ., 1, 20.58690.99830.9883yesN/A
B4EBD1SYD_BURCJ6, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
A9AFC7SYD_BURM16, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
B9ME28SYD_ACIET6, ., 1, ., 1, ., 1, 20.58950.98650.9734yesN/A
Q5P280SYD_AROAE6, ., 1, ., 1, ., 1, 20.56990.98650.9799yesN/A
Q9K0U5SYD_NEIMB6, ., 1, ., 1, ., 1, 20.58220.99150.9800yesN/A
Q8Y270SYD_RALSO6, ., 1, ., 1, ., 1, 20.60370.98820.9719yesN/A
A0KAE8SYD_BURCH6, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
A3N5V6SYD_BURP66, ., 1, ., 1, ., 1, 20.59491.00.9916yesN/A
A9IHE2SYD_BORPD6, ., 1, ., 1, ., 1, 20.60030.98650.9865yesN/A
A1KAJ9SYD_AZOSB6, ., 1, ., 1, ., 1, 20.57840.98650.9799yesN/A
A4JHR9SYD_BURVG6, ., 1, ., 1, ., 1, 20.59321.00.9916yesN/A
Q7W275SYD_BORPA6, ., 1, ., 1, ., 1, 20.59520.98820.9865yesN/A
A3MNU6SYD_BURM76, ., 1, ., 1, ., 1, 20.59491.00.9916yesN/A
Q0BBZ1SYD_BURCM6, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
A9M257SYD_NEIM06, ., 1, ., 1, ., 1, 20.57710.99150.9800yesN/A
B2SX42SYD_BURPP6, ., 1, ., 1, ., 1, 20.60300.99490.9883yesN/A
B1YWF2SYD_BURA46, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
Q3JVY8SYD_BURP16, ., 1, ., 1, ., 1, 20.59491.00.9949yesN/A
Q475W2SYD_CUPPJ6, ., 1, ., 1, ., 1, 20.59930.99830.9867yesN/A
Q145N3SYD_BURXL6, ., 1, ., 1, ., 1, 20.60470.99490.9883yesN/A
Q63X93SYD_BURPS6, ., 1, ., 1, ., 1, 20.59491.00.9949yesN/A
B2JCV5SYD_BURP86, ., 1, ., 1, ., 1, 20.59491.00.9933yesN/A
A3NRK2SYD_BURP06, ., 1, ., 1, ., 1, 20.59491.00.9916yesN/A
A1TT99SYD_ACIAC6, ., 1, ., 1, ., 1, 20.58780.98650.9718yesN/A
Q0KEG8SYD_CUPNH6, ., 1, ., 1, ., 1, 20.60430.99830.9867yesN/A
A1W4E1SYD_ACISJ6, ., 1, ., 1, ., 1, 20.58950.98650.9734yesN/A
A9BP37SYD_DELAS6, ., 1, ., 1, ., 1, 20.58840.98650.9783yesN/A
Q1LRG2SYD_RALME6, ., 1, ., 1, ., 1, 20.60540.98820.9767yesN/A
Q9JT23SYD_NEIMA6, ., 1, ., 1, ., 1, 20.57710.99150.9800yesN/A
B1JYI9SYD_BURCC6, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
B1XWR8SYD_LEPCP6, ., 1, ., 1, ., 1, 20.61050.98650.9816yesN/A
A2SEP2SYD_METPP6, ., 1, ., 1, ., 1, 20.60710.98650.9799yesN/A
Q21YX2SYD_RHOFD6, ., 1, ., 1, ., 1, 20.59260.98650.9607yesN/A
Q2L1K6SYD_BORA16, ., 1, ., 1, ., 1, 20.58750.99830.9966yesN/A
Q47IE0SYD_DECAR6, ., 1, ., 1, ., 1, 20.57670.98650.9799yesN/A
A4G8X1SYD_HERAR6, ., 1, ., 1, ., 1, 20.65810.98820.9816yesN/A
Q82SQ5SYD_NITEU6, ., 1, ., 1, ., 1, 20.57310.99150.9949yesN/A
C1DB91SYD_LARHH6, ., 1, ., 1, ., 1, 20.56920.99660.9834yesN/A
B2AH15SYD_CUPTR6, ., 1, ., 1, ., 1, 20.60100.99830.9867yesN/A
Q2T132SYD_BURTA6, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A
Q1GYN8SYD_METFK6, ., 1, ., 1, ., 1, 20.56660.98820.9898yesN/A
Q1BTP1SYD_BURCA6, ., 1, ., 1, ., 1, 20.59151.00.9916yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.120.991
3rd Layer6.1.10.976

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
PRK00476588 PRK00476, aspS, aspartyl-tRNA synthetase; Validate 0.0
COG0173585 COG0173, AspS, Aspartyl-tRNA synthetase [Translati 0.0
TIGR00459583 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba 0.0
PLN02903652 PLN02903, PLN02903, aminoacyl-tRNA ligase 0.0
PRK12820 706 PRK12820, PRK12820, bifunctional aspartyl-tRNA syn 0.0
cd00777280 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c 2e-87
pfam00152345 pfam00152, tRNA-synt_2, tRNA synthetases class II 1e-74
cd00777280 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c 8e-73
cd04317135 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina 4e-58
pfam00152345 pfam00152, tRNA-synt_2, tRNA synthetases class II 9e-54
PRK05159437 PRK05159, aspC, aspartyl-tRNA synthetase; Provisio 3e-51
COG0017435 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas 1e-49
cd00669269 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn 3e-46
TIGR00458428 TIGR00458, aspS_nondisc, nondiscriminating asparty 2e-42
cd00669269 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn 4e-36
cd0410085 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter 2e-27
cd00776322 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As 9e-23
pfam0293894 pfam02938, GAD, GAD domain 7e-22
PRK03932450 PRK03932, asnC, asparaginyl-tRNA synthetase; Valid 2e-21
TIGR00499496 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar 3e-21
TIGR00457453 TIGR00457, asnS, asparaginyl-tRNA synthetase 8e-21
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 1e-20
COG1190502 COG1190, LysU, Lysyl-tRNA synthetase (class II) [T 2e-20
PLN02850530 PLN02850, PLN02850, aspartate-tRNA ligase 2e-20
PRK05159437 PRK05159, aspC, aspartyl-tRNA synthetase; Provisio 9e-19
PLN02502553 PLN02502, PLN02502, lysyl-tRNA synthetase 2e-18
cd00776322 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As 1e-17
PRK00484491 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed 5e-17
COG0017435 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas 3e-15
PRK12445505 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe 3e-15
cd04316108 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-t 2e-14
pfam0133675 pfam01336, tRNA_anti, OB-fold nucleic acid binding 1e-13
PRK06462335 PRK06462, PRK06462, asparagine synthetase A; Revie 2e-13
cd00775329 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c 2e-13
PLN02850530 PLN02850, PLN02850, aspartate-tRNA ligase 5e-13
TIGR00458428 TIGR00458, aspS_nondisc, nondiscriminating asparty 1e-12
PTZ00401550 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov 1e-12
PTZ00385659 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi 3e-12
cd0432384 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t 1e-11
PRK00484491 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed 3e-11
TIGR00457453 TIGR00457, asnS, asparaginyl-tRNA synthetase 4e-11
COG1190502 COG1190, LysU, Lysyl-tRNA synthetase (class II) [T 4e-11
cd00775329 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c 6e-11
TIGR00499496 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar 1e-10
PTZ00401550 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov 2e-10
PRK03932450 PRK03932, asnC, asparaginyl-tRNA synthetase; Valid 9e-10
PRK12445505 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe 4e-09
PRK029831094 PRK02983, lysS, lysyl-tRNA synthetase; Provisional 1e-08
PRK029831094 PRK02983, lysS, lysyl-tRNA synthetase; Provisional 2e-08
PLN02502553 PLN02502, PLN02502, lysyl-tRNA synthetase 3e-08
COG2269322 COG2269, COG2269, Truncated, possibly inactive, ly 3e-08
cd04322108 cd04322, LysRS_N, LysRS_N: N-terminal, anticodon r 6e-08
TIGR00462290 TIGR00462, genX, EF-P lysine aminoacylase GenX 1e-07
PRK029831094 PRK02983, lysS, lysyl-tRNA synthetase; Provisional 3e-07
COG2269322 COG2269, COG2269, Truncated, possibly inactive, ly 9e-07
TIGR00462290 TIGR00462, genX, EF-P lysine aminoacylase GenX 2e-06
PLN02603565 PLN02603, PLN02603, asparaginyl-tRNA synthetase 2e-06
PTZ00417585 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona 4e-06
cd04319103 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-termina 5e-06
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 5e-06
PTZ00417585 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona 7e-06
PRK09350306 PRK09350, PRK09350, poxB regulator PoxA; Provision 7e-06
PTZ00385659 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi 2e-05
PTZ00425586 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis 2e-05
PRK09350306 PRK09350, PRK09350, poxB regulator PoxA; Provision 3e-05
cd0432186 cd04321, ScAspRS_mt_like_N, ScAspRS_mt_like_N: N-t 6e-05
PTZ00425586 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis 7e-05
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 1e-04
cd0431882 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina 1e-04
PLN02532633 PLN02532, PLN02532, asparagine-tRNA synthetase 0.001
PLN02221572 PLN02221, PLN02221, asparaginyl-tRNA synthetase 0.002
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated Back     alignment and domain information 
 Score =  966 bits (2499), Expect = 0.0
 Identities = 330/591 (55%), Positives = 437/591 (73%), Gaps = 14/591 (2%)

Query: 1   MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
           MRTHYCG + E  + Q ++LCGWVHR+R+HGG+IFIDLRD  G+VQ+VFDP D + +++A
Sbjct: 3   MRTHYCGELRESHVGQTVTLCGWVHRRRDHGGLIFIDLRDREGIVQVVFDP-DAEAFEVA 61

Query: 61  KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQI-DEKNILE 119
           + +R+E+ +Q+ G V +RP  T N NL +G IE+L  EL++LN S TLPF I DE+++ E
Sbjct: 62  ESLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSE 121

Query: 120 VTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLV 179
              LKYR L LR   MQKNL+LR KVT  +R FLD   F+EIETPIL+KSTPEGARDYLV
Sbjct: 122 ELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGARDYLV 181

Query: 180 PSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSF 239
           PSR++PG+F+ALPQSPQLFKQLLMVA FDRYYQI +CFRDEDLR+DRQPEFTQID E SF
Sbjct: 182 PSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSF 241

Query: 240 MNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTN 299
           + +E++  L E +IR +F + L + LP PFP + ++ A++ YGSDKPD+   L   D+T+
Sbjct: 242 VTQEDVMALMEGLIRHVFKEVLGVDLPTPFPRMTYAEAMRRYGSDKPDLRFGLELVDVTD 301

Query: 300 IMKDSDFKLFSKIANMKNGRIIGLKIPGG-FSISRNEINYYTQFVKTYGAKGLTYIKIHK 358
           + KDS FK+F+  AN   GR+  +++PGG   +SR +I+  T+F K YGAKGL YIK+  
Sbjct: 302 LFKDSGFKVFAGAAN-DGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGLAYIKV-- 358

Query: 359 ISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYS 418
                DGLK PI K+ +   L  ++ +T A++GD+IF G D+  +VN+ + ALR+K+G  
Sbjct: 359 ---NEDGLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGK- 414

Query: 419 DFGKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIIT-NPEKIF 477
              +   I  +K+  LWV++FPMF+YD+    W+A HHPFT PKD   D + T +P K  
Sbjct: 415 ---ELGLIDEDKFAFLWVVDFPMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKAR 471

Query: 478 SKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGG 537
           + AYDL++NG+E+GGGSIRIH  EIQ+K+F++L I  +  + +FGFLL++LKYGAPPHGG
Sbjct: 472 AYAYDLVLNGYELGGGSIRIHRPEIQEKVFEILGISEEEAEEKFGFLLDALKYGAPPHGG 531

Query: 538 IAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI 588
           IAFGLDRL+ ++ G+ SIRDVIAFPKTQSAQ LLT APS VDEKQL EL I
Sbjct: 532 IAFGLDRLVMLLAGADSIRDVIAFPKTQSAQDLLTGAPSPVDEKQLRELGI 582

Length = 588
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>gnl|CDD|145868 pfam02938, GAD, GAD domain Back     alignment and domain information
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase Back     alignment and domain information
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain Back     alignment and domain information
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed Back     alignment and domain information
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase Back     alignment and domain information
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs Back     alignment and domain information
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|239817 cd04322, LysRS_N, LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX Back     alignment and domain information
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|225178 COG2269, COG2269, Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX Back     alignment and domain information
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional Back     alignment and domain information
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional Back     alignment and domain information
>gnl|CDD|239816 cd04321, ScAspRS_mt_like_N, ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS Back     alignment and domain information
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase Back     alignment and domain information
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 595
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 100.0
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 100.0
PLN02903652 aminoacyl-tRNA ligase 100.0
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 100.0
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 100.0
KOG2411|consensus628 100.0
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 100.0
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 100.0
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 100.0
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 100.0
PTZ00401550 aspartyl-tRNA synthetase; Provisional 100.0
PTZ00425586 asparagine-tRNA ligase; Provisional 100.0
PRK12445505 lysyl-tRNA synthetase; Reviewed 100.0
PLN02850530 aspartate-tRNA ligase 100.0
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 100.0
PLN02603565 asparaginyl-tRNA synthetase 100.0
PLN02502553 lysyl-tRNA synthetase 100.0
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 100.0
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 100.0
PLN02221572 asparaginyl-tRNA synthetase 100.0
PTZ00385659 lysyl-tRNA synthetase; Provisional 100.0
PTZ00417585 lysine-tRNA ligase; Provisional 100.0
PLN02532633 asparagine-tRNA synthetase 100.0
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 100.0
KOG0556|consensus533 100.0
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 100.0
KOG0554|consensus446 100.0
KOG1885|consensus560 100.0
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 100.0
KOG0555|consensus545 100.0
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 100.0
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 100.0
PRK06462335 asparagine synthetase A; Reviewed 100.0
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 100.0
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 100.0
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 100.0
PRK09350306 poxB regulator PoxA; Provisional 100.0
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 100.0
cd04317135 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod 99.93
cd04322108 LysRS_N LysRS_N: N-terminal, anticodon recognition 99.85
cd04316108 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a 99.84
cd04319103 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod 99.82
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 99.79
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 99.78
cd04320102 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r 99.75
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 99.72
cd0432384 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a 99.67
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 99.66
cd0410085 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant 99.65
cd0432186 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a 99.64
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.64
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 99.63
cd0431882 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod 99.61
PLN02788402 phenylalanine-tRNA synthetase 99.53
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.52
TIGR00469460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 99.44
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.42
PTZ00213348 asparagine synthetase A; Provisional 99.38
PRK05425327 asparagine synthetase AsnA; Provisional 99.36
cd00645309 AsnA Asparagine synthetase (aspartate-ammonia liga 99.35
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 99.35
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 99.28
PRK04028630 glutamyl-tRNA(Gln) amidotransferase subunit E; Val 99.26
TIGR00669330 asnA aspartate--ammonia ligase, AsnA-type. The fac 99.22
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.06
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 98.99
PF0293895 GAD: GAD domain; InterPro: IPR004115 This entry re 98.93
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 98.93
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 98.85
PLN02972763 Histidyl-tRNA synthetase 98.81
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 98.8
PRK12420423 histidyl-tRNA synthetase; Provisional 98.76
PLN02530487 histidine-tRNA ligase 98.75
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 98.41
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 98.39
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 98.37
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 98.35
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 98.34
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 98.29
CHL00201430 syh histidine-tRNA synthetase; Provisional 98.28
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 98.27
TIGR00134620 gatE_arch glutamyl-tRNA(Gln) amidotransferase, sub 98.22
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 98.19
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 98.13
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 98.11
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 98.1
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 98.09
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 98.03
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 98.03
PRK09194565 prolyl-tRNA synthetase; Provisional 98.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 97.89
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 97.89
TIGR00414418 serS seryl-tRNA synthetase. This model represents 97.85
PRK12444639 threonyl-tRNA synthetase; Reviewed 97.83
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 97.81
PLN02908686 threonyl-tRNA synthetase 97.81
COG2502330 AsnA Asparagine synthetase A [Amino acid transport 97.79
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 97.75
KOG2784|consensus483 97.7
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 97.65
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 97.65
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 97.64
PRK05431425 seryl-tRNA synthetase; Provisional 97.62
PRK12325439 prolyl-tRNA synthetase; Provisional 97.61
PRK08661477 prolyl-tRNA synthetase; Provisional 97.6
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 97.55
KOG1936|consensus518 97.5
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 97.43
PLN02837614 threonine-tRNA ligase 97.32
PRK03991613 threonyl-tRNA synthetase; Validated 97.31
PLN02678448 seryl-tRNA synthetase 97.03
cd0448978 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol 96.91
PLN02320502 seryl-tRNA synthetase 96.76
cd0448773 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f 96.61
PRK04173456 glycyl-tRNA synthetase; Provisional 96.6
cd0448392 hOBFC1_like hOBFC1_like: A subfamily of OB folds s 96.51
cd0447895 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor 96.48
COG1107715 Archaea-specific RecJ-like exonuclease, contains D 96.44
PF1374299 tRNA_anti_2: OB-fold nucleic acid binding domain 96.39
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 96.39
KOG1035|consensus1351 96.37
KOG2783|consensus436 96.35
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 96.34
PF04076103 BOF: Bacterial OB fold (BOF) protein; InterPro: IP 96.14
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 96.08
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 96.04
KOG2324|consensus457 96.01
PRK07373449 DNA polymerase III subunit alpha; Reviewed 95.98
cd0352475 RPA2_OBF_family RPA2_OBF_family: A family of oligo 95.86
cd0448291 RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara 95.84
PRK00960517 seryl-tRNA synthetase; Provisional 95.74
cd0448584 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp 95.65
COG4085204 Predicted RNA-binding protein, contains TRAM domai 95.41
TIGR00156126 conserved hypothetical protein TIGR00156. As of th 95.35
PF10451256 Stn1: Telomere regulation protein Stn1; InterPro: 95.11
cd0449283 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol 95.05
PRK056721046 dnaE2 error-prone DNA polymerase; Validated 95.0
cd0449079 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds 95.0
PRK10053130 hypothetical protein; Provisional 94.9
PRK073741170 dnaE DNA polymerase III subunit alpha; Validated 94.8
cd04474104 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor 94.71
COG3111128 Periplasmic protein with OB-fold [Function unknown 94.71
PRK068261151 dnaE DNA polymerase III DnaE; Reviewed 94.52
PRK056731135 dnaE DNA polymerase III subunit alpha; Validated 94.28
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 94.19
PRK069201107 dnaE DNA polymerase III DnaE; Reviewed 94.06
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 93.88
COG5235258 RFA2 Single-stranded DNA-binding replication prote 93.76
cd04479101 RPA3 RPA3: A subfamily of OB folds similar to huma 92.94
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 92.82
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 92.07
PRK072791034 dnaE DNA polymerase III DnaE; Reviewed 92.0
PF08661109 Rep_fac-A_3: Replication factor A protein 3; Inter 91.42
PRK15491374 replication factor A; Provisional 88.79
cd0448875 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f 88.62
KOG3108|consensus265 87.96
PRK12366637 replication factor A; Reviewed 87.69
PRK13480314 3'-5' exoribonuclease YhaM; Provisional 87.66
TIGR00617608 rpa1 replication factor-a protein 1 (rpa1). This f 86.63
PF1507286 DUF4539: Domain of unknown function (DUF4539) 86.14
PRK07459121 single-stranded DNA-binding protein; Provisional 85.95
PF12869144 tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 85.8
PRK06461129 single-stranded DNA-binding protein; Reviewed 85.68
cd0449182 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil 85.66
COG1571421 Predicted DNA-binding protein containing a Zn-ribb 84.95
PLN02734684 glycyl-tRNA synthetase 84.57
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 83.61
PRK07211485 replication factor A; Reviewed 83.47
PRK00286438 xseA exodeoxyribonuclease VII large subunit; Revie 82.79
PRK06863168 single-stranded DNA-binding protein; Provisional 82.15
TIGR00237432 xseA exodeoxyribonuclease VII, large subunit. This 81.78
COG1570440 XseA Exonuclease VII, large subunit [DNA replicati 81.64
cd0448482 polC_OBF polC_OBF: A subfamily of OB folds corresp 81.38
PRK07135973 dnaE DNA polymerase III DnaE; Validated 80.94
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 80.83
KOG2509|consensus455 80.52
PRK14894539 glycyl-tRNA synthetase; Provisional 80.45
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 80.09
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.9e-156  Score=1232.90  Aligned_cols=580  Identities=56%  Similarity=0.989  Sum_probs=563.3

Q ss_pred             CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECC-CcHHHHHHHhcCCCCcEEEEEeEEEeCC
Q psy3762           1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDP-NDIKIYKIAKIIRNEFCLQIIGKVCSRP   79 (595)
Q Consensus         1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~-~~~~~~~~~~~l~~es~V~V~G~v~~~~   79 (595)
                      ||||+||+|+.+++|++|+++|||++.|++|+++|++|||.+|.+|||+++ +++++++.+.+|+.|++|.|+|+|..++
T Consensus         1 ~Rt~~cg~l~~~~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~GivQvv~~~~~~~~~~~~a~~lr~E~vi~V~G~V~~R~   80 (585)
T COG0173           1 MRTHYCGELRESHVGQTVTLSGWVHRRRDHGGLIFIDLRDREGIVQVVFDPEDSPEAFEVASRLRNEFVIQVTGTVRARP   80 (585)
T ss_pred             CCceeccccCHHHCCCEEEEEeeeeeccccCCeEEEEcccCCCeEEEEECCccCHHHHHHHHhcCceEEEEEEEEEEecC
Confidence            799999999999999999999999999999999999999999999999998 5778999999999999999999999999


Q ss_pred             CCCCCCCcCCccEEEEEeeEEEeecCCCCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCC
Q psy3762          80 NKTNNTNLISGNIEILCRELKILNSSITLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKF  158 (595)
Q Consensus        80 ~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF  158 (595)
                      ++..|+++++|++||++++|+|||.|.++||.+.+. ..++++||+|||||||++.++..+++|+++..++|+||.++||
T Consensus        81 e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~iR~~ld~~gF  160 (585)
T COG0173          81 EGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGF  160 (585)
T ss_pred             ccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999885 6889999999999999999999999999999999999999999


Q ss_pred             eeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccccc
Q psy3762         159 IEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETS  238 (595)
Q Consensus       159 ~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~  238 (595)
                      +||+||+|++++||||++|.||++.++|+||.|+||||+|||+||++|++|+|||++|||+|+.+++|+|||||+|+||+
T Consensus       161 ~EiETPiLtkSTPEGARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmS  240 (585)
T COG0173         161 LEIETPILTKSTPEGARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMS  240 (585)
T ss_pred             eEeecCccccCCCccccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCC
Q psy3762         239 FMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNG  318 (595)
Q Consensus       239 ~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (595)
                      |++.+|+|+++|+|++++++.+.+.++..||+||||+|||++||+||||+|++++++|+++.++++.|.+|++++..+ +
T Consensus       241 F~~~edv~~~~E~l~~~vf~~~~~i~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~-~  319 (585)
T COG0173         241 FVDEEDVMELIEKLLRYVFKEVKGIELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANG-G  319 (585)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987654 4


Q ss_pred             eeEEEecCCCCccchhhhHHHHHHHHHhCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecC
Q psy3762         319 RIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGG  398 (595)
Q Consensus       319 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~  398 (595)
                      +++++++|++..+||+++|.|.++++.+|.+|++|+++++     ++++++++|+++++...++++++++++||++||++
T Consensus       320 ~v~ai~vp~~~~~sRk~id~~~~~ak~~gakGLa~ikv~~-----~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A  394 (585)
T COG0173         320 RVKAIVVPGGASLSRKQIDELTEFAKIYGAKGLAYIKVEE-----DGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVA  394 (585)
T ss_pred             eEEEEEcCCccccCHHHHHHHHHHHHHcCCCceEEEEEec-----CCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEec
Confidence            9999999999999999999999999999999999999988     35899999999999999999999999999999999


Q ss_pred             CchhhHHHHHHHHHHHhcccCcccccccc-cCCCccEEEEecCCCccccccccccccccCCCCCCC-CCCcccccCcccc
Q psy3762         399 DEKNIVNNFMSALRIKIGYSDFGKRNNIL-NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKD-GYEDFIITNPEKI  476 (595)
Q Consensus       399 ~~~~~~~~~lg~~r~~l~~~~~~~~~~l~-~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~-~~~~l~~~dp~~~  476 (595)
                      +..+.++++||++|.++++     +++|+ ++.++|+||+|||+|+|++++++|.|+|||||||+. +.+.+. ++|...
T Consensus       395 ~~~~~~~~~lGalR~~l~~-----~l~li~~~~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~-~~p~~~  468 (585)
T COG0173         395 DKKKVVNKALGALRLKLGK-----ELGLIDKDQFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLE-ADPESV  468 (585)
T ss_pred             CcHHHHHHHHHHHHHHHHH-----HhCCCCcccceEEEEEecCccCCccccCceecccCCCCCCCccchhhhh-cCHHHh
Confidence            9999999999999999998     89999 678999999999999999999999999999999998 777676 788888


Q ss_pred             ccceeeEEecCEEEeecccccCCHHHHHHHHHHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCcc
Q psy3762         477 FSKAYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIR  556 (595)
Q Consensus       477 ~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IR  556 (595)
                      .+.+||||+||+||||||+|||+++.|++.|+.+|++++++.++|+++|+||+||+|||||+|+|||||+|+|+|.+|||
T Consensus       469 ~a~aYDlVlNG~ElggGSiRIh~~eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIR  548 (585)
T COG0173         469 RARAYDLVLNGYELGGGSIRIHDPEIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIR  548 (585)
T ss_pred             hhhhccEEeccEeeccceeeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCccccCCCCCCcCChhhhhhccccccc
Q psy3762         557 DVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK  592 (595)
Q Consensus       557 dvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  592 (595)
                      |||+|||+.+|.||||+|||.|+++||+||||++..
T Consensus       549 eVIAFPKt~~a~dllt~APs~v~~~qL~El~i~~~~  584 (585)
T COG0173         549 DVIAFPKTQQAADLLTNAPSEVDEKQLKELSIKVRP  584 (585)
T ss_pred             heeecCCCccccccccCCCCcCCHHHHHhcceeccC
Confidence            999999999999999999999999999999999865

>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>KOG2411|consensus Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG0556|consensus Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0554|consensus Back     alignment and domain information
>KOG1885|consensus Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0555|consensus Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PTZ00213 asparagine synthetase A; Provisional Back     alignment and domain information
>PRK05425 asparagine synthetase AsnA; Provisional Back     alignment and domain information
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated Back     alignment and domain information
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ] Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG2784|consensus Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>KOG1936|consensus Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) Back     alignment and domain information
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1035|consensus Back     alignment and domain information
>KOG2783|consensus Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2324|consensus Back     alignment and domain information
>PRK07373 DNA polymerase III subunit alpha; Reviewed Back     alignment and domain information
>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) Back     alignment and domain information
>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] Back     alignment and domain information
>TIGR00156 conserved hypothetical protein TIGR00156 Back     alignment and domain information
>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA Back     alignment and domain information
>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) Back     alignment and domain information
>PRK05672 dnaE2 error-prone DNA polymerase; Validated Back     alignment and domain information
>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit Back     alignment and domain information
>PRK10053 hypothetical protein; Provisional Back     alignment and domain information
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) Back     alignment and domain information
>COG3111 Periplasmic protein with OB-fold [Function unknown] Back     alignment and domain information
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed Back     alignment and domain information
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair Back     alignment and domain information
>PRK15491 replication factor A; Provisional Back     alignment and domain information
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG Back     alignment and domain information
>KOG3108|consensus Back     alignment and domain information
>PRK12366 replication factor A; Reviewed Back     alignment and domain information
>PRK13480 3'-5' exoribonuclease YhaM; Provisional Back     alignment and domain information
>TIGR00617 rpa1 replication factor-a protein 1 (rpa1) Back     alignment and domain information
>PF15072 DUF4539: Domain of unknown function (DUF4539) Back     alignment and domain information
>PRK07459 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] Back     alignment and domain information
>PRK06461 single-stranded DNA-binding protein; Reviewed Back     alignment and domain information
>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) Back     alignment and domain information
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only] Back     alignment and domain information
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07211 replication factor A; Reviewed Back     alignment and domain information
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed Back     alignment and domain information
>PRK06863 single-stranded DNA-binding protein; Provisional Back     alignment and domain information
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit Back     alignment and domain information
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) Back     alignment and domain information
>PRK07135 dnaE DNA polymerase III DnaE; Validated Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>KOG2509|consensus Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1eqr_A590 Crystal Structure Of Free Aspartyl-Trna Synthetase 0.0
1c0a_A585 Crystal Structure Of The E. Coli Aspartyl-Trna Synt 0.0
1efw_A580 Crystal Structure Of Aspartyl-Trna Synthetase From 1e-137
4ah6_A617 Human Mitochondrial Aspartyl-Trna Synthetase Length 1e-109
3nel_A438 Aspartyl-Trna Synthetase Complexed With Aspartic Ac 4e-27
3nel_A438 Aspartyl-Trna Synthetase Complexed With Aspartic Ac 7e-09
1b8a_A438 Aspartyl-trna Synthetase Length = 438 3e-26
1b8a_A438 Aspartyl-trna Synthetase Length = 438 6e-09
1wyd_A429 Crystal Structure Of Aspartyl-Trna Synthetase From 3e-22
1wyd_A429 Crystal Structure Of Aspartyl-Trna Synthetase From 9e-11
1n9w_A422 Crystal Structure Of The Non-Discriminating And Arc 2e-18
1n9w_A422 Crystal Structure Of The Non-Discriminating And Arc 2e-08
1x54_A434 Crystal Structure Of Asparaginyl-trna Synthetase Fr 5e-15
1bbu_A504 Lysyl-Trna Synthetase (Lyss) Complexed With Lysine 6e-15
1bbu_A504 Lysyl-Trna Synthetase (Lyss) Complexed With Lysine 2e-08
4ex5_A529 Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr 7e-15
4ex5_A529 Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr 5e-10
3m4p_A456 Entamoeba Histolytica Asparaginyl-Trna Synthetase ( 9e-15
3m4p_A456 Entamoeba Histolytica Asparaginyl-Trna Synthetase ( 9e-06
1lyl_A504 Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe 1e-13
1lyl_A504 Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe 3e-09
1eov_A487 Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 4e-13
1eov_A487 Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 2e-06
1asy_A490 Class Ii Aminoacyl Transfer Rna Synthetases: Crysta 4e-13
1asy_A490 Class Ii Aminoacyl Transfer Rna Synthetases: Crysta 2e-06
4dpg_A513 Crystal Structure Of Human Lysrs: P38/aimp2 Complex 5e-13
3bju_A521 Crystal Structure Of Tetrameric Form Of Human Lysyl 5e-13
3e9h_A493 Lysyl-Trna Synthetase From Bacillus Stearothermophi 6e-09
3e9h_A493 Lysyl-Trna Synthetase From Bacillus Stearothermophi 1e-07
2xgt_A435 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 2e-08
3i7f_A548 Aspartyl Trna Synthetase From Entamoeba Histolytica 2e-08
2xti_A437 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 3e-08
3a5y_A345 Crystal Structure Of Genx From Escherichia Coli In 6e-06
3a5y_A345 Crystal Structure Of Genx From Escherichia Coli In 3e-04
3a5z_A328 Crystal Structure Of Escherichia Coli Genx In Compl 7e-06
3a5z_A328 Crystal Structure Of Escherichia Coli Genx In Compl 2e-04
3g1z_A326 Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe 1e-05
3g1z_A326 Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthe 4e-05
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 Back     alignment and structure 
Iteration: 1

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 294/596 (49%), Positives = 417/596 (69%), Gaps = 8/596 (1%)
Query: 1   MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
           MRT YCG +    + Q ++LCGWV+R+R+ G +IFID+RD  G+VQ+ FDP+     K+A
Sbjct: 1   MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60
Query: 61  KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV 120
             +RNEFC+Q+ G V +R  K  N ++ +G IE+L   L I+N +  LP   +  N  E 
Sbjct: 61  SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNT-EE 119
Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
             LKYR L LR   M + L+ R K+T  VR+F+D   F++IETP+L+K+TPEGARDYLVP
Sbjct: 120 ARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVP 179
Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240
           SR++ G+F+ALPQSPQLFKQLLM++ FDRYYQI KCFRDEDLR+DRQPEFTQID ETSFM
Sbjct: 180 SRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 239
Query: 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300
              ++R + E ++R ++ +   + L + FPV+ ++ A + YGSDKPD+   +  TD+ ++
Sbjct: 240 TAPQVREVMEALVRHLWLEVKGVDLGD-FPVMTFAEAERRYGSDKPDLRNPMELTDVADL 298
Query: 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360
           +K  +F +F+  AN   GR+  L++PGG S++R +I+ Y  FVK YGAKGL YIK+++ +
Sbjct: 299 LKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERA 358
Query: 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDF 420
           K  +G+ SP+ K+ N  I+E I+++T AQ+GD+IF G D K IV + M ALR+K+G  D 
Sbjct: 359 KGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVG-KDL 417
Query: 421 GKRNNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKA 480
           G  +    +KW PLWVI+FPMF+ D       A HHPFT+PKD     +   PE   + A
Sbjct: 418 GLTD---ESKWAPLWVIDFPMFE-DDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANA 473
Query: 481 YDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAF 540
           YD++ING+E+GGGS+RIH+ ++Q+ +F +L I+ +  + +FGFLL++LKYG PPH G+AF
Sbjct: 474 YDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAF 533
Query: 541 GLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI-LYKKTKN 595
           GLDRL  ++TG+ +IRDVIAFPKT +A CL+T APS  +   L EL+I + KK +N
Sbjct: 534 GLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAEN 589
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 Back     alignment and structure
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 Back     alignment and structure
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 Back     alignment and structure
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 Back     alignment and structure
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 Back     alignment and structure
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 Back     alignment and structure
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 Back     alignment and structure
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 Back     alignment and structure
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 Back     alignment and structure
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 Back     alignment and structure
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 Back     alignment and structure
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 Back     alignment and structure
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 Back     alignment and structure
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 Back     alignment and structure
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 Back     alignment and structure
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 Back     alignment and structure
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 Back     alignment and structure
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 Back     alignment and structure
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 Back     alignment and structure
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 Back     alignment and structure
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 Back     alignment and structure
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 Back     alignment and structure
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 Back     alignment and structure
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 Back     alignment and structure
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 Back     alignment and structure
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 Back     alignment and structure
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 Back     alignment and structure
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 Back     alignment and structure
>pdb|3A5Y|A Chain A, Crystal Structure Of Genx From Escherichia Coli In Complex With Lysyladenylate Analog Length = 345 Back     alignment and structure
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 Back     alignment and structure
>pdb|3A5Z|A Chain A, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 328 Back     alignment and structure
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 Back     alignment and structure
>pdb|3G1Z|A Chain A, Structure Of Idp01693YJEA, A POTENTIAL T-Rna Synthetase From Salmonella Typhimurium Length = 326 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query595
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 0.0
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 0.0
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 1e-53
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 3e-19
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 1e-52
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 3e-19
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 7e-47
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 1e-19
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 7e-46
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 6e-15
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 9e-46
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 1e-19
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 5e-41
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 1e-14
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 2e-38
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 3e-14
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 1e-36
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 2e-19
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 6e-25
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 2e-16
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 4e-17
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 2e-09
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 5e-17
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 2e-10
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 6e-17
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 3e-10
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 8e-17
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 3e-10
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 2e-13
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-12
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 2e-06
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 Back     alignment and structure
 Score =  979 bits (2533), Expect = 0.0
 Identities = 289/589 (49%), Positives = 410/589 (69%), Gaps = 9/589 (1%)

Query: 1   MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDIKIYKIA 60
           MRT YCG +    + Q ++LCGWV+R+R+ G +IFID+RD  G+VQ+ FDP+     K+A
Sbjct: 1   MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLA 60

Query: 61  KIIRNEFCLQIIGKVCSRPNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEKNILEV 120
             +RNEFC+Q+ G V +R  K  N ++ +G IE+L   L I+N +  LP   +     E 
Sbjct: 61  SELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-VNTEE 119

Query: 121 TNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVP 180
             LKYR L LR   M + L+ R K+T  VR+F+D   F++IETP+L+K+TPEGARDYLVP
Sbjct: 120 ARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVP 179

Query: 181 SRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFM 240
           SR++ G+F+ALPQSPQLFKQLLM++ FDRYYQI KCFRDEDLR+DRQPEFTQID ETSFM
Sbjct: 180 SRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFM 239

Query: 241 NEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNI 300
              ++R + E ++R ++ +   + L   FPV+ ++ A + YGSDKPD+   +  TD+ ++
Sbjct: 240 TAPQVREVMEALVRHLWLEVKGVDLG-DFPVMTFAEAERRYGSDKPDLRNPMELTDVADL 298

Query: 301 MKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYGAKGLTYIKIHKIS 360
           +K  +F +F+  AN   GR+  L++PGG S++R +I+ Y  FVK YGAKGL YIK+++ +
Sbjct: 299 LKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERA 358

Query: 361 KEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDF 420
           K  +G+ SP+ K+ N  I+E I+++T AQ+GD+IF G D K IV + M ALR+K+     
Sbjct: 359 KGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKV----- 413

Query: 421 GKRNNILN-NKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSK 479
           GK   + + +KW PLWVI+FPMF+ D       A HHPFT+PKD     +   PE   + 
Sbjct: 414 GKDLGLTDESKWAPLWVIDFPMFEDDG-EGGLTAMHHPFTSPKDMTAAELKAAPENAVAN 472

Query: 480 AYDLIINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIA 539
           AYD++ING+E+GGGS+RIH+ ++Q+ +F +L I+ +  + +FGFLL++LKYG PPH G+A
Sbjct: 473 AYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLA 532

Query: 540 FGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNI 588
           FGLDRL  ++TG+ +IRDVIAFPKT +A CL+T APS  +   L EL+I
Sbjct: 533 FGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSI 581
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 100.0
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 100.0
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 100.0
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 100.0
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 100.0
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 100.0
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 100.0
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 100.0
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 100.0
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 100.0
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 100.0
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 100.0
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 100.0
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 100.0
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 100.0
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 100.0
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.9
12as_A330 Asparagine synthetase; ligase, nitrogen fixation; 99.84
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.74
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.72
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 99.58
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 99.57
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 99.4
3cmq_A415 Phenylalanyl-tRNA synthetase, mitochondrial; class 99.12
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 98.97
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.75
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 98.74
2odr_B648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.68
2odr_A665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.68
2odr_D685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.68
2odr_C701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 98.64
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 98.38
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 98.36
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 98.35
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 98.32
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 98.32
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 98.31
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 98.29
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 98.28
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 98.26
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 98.25
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 98.22
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 98.19
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 98.19
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 98.16
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.14
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 98.09
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 98.07
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 98.05
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 98.05
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 98.04
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 98.03
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 97.95
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 97.94
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 97.9
4hvc_A519 Bifunctional glutamate/proline--tRNA ligase; ligas 97.9
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.79
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 97.73
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 97.71
3err_A536 Fusion protein of microtubule binding domain from 97.71
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 97.64
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.58
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 97.58
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 97.56
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 97.5
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 97.44
3kf6_A159 Protein STN1; OB fold, chromosomal protein, DNA-bi 96.97
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 96.95
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 96.95
3kdf_D132 Replication protein A 32 kDa subunit; wheat GERM c 96.91
3dm3_A105 Replication factor A; probably plays AN essential 96.7
2k50_A115 Replication factor A related protein; uncharacteri 96.59
4gop_B136 Putative uncharacterized protein; OB fold, ssDNA b 96.53
1nnx_A109 Protein YGIW; structural genomics, hypothetical pr 96.52
3e0e_A97 Replication protein A; structural genomics, PSI-2, 96.49
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 96.3
1ynx_A114 Replication factor-A protein 1; canonical OB fold, 96.28
3au7_A402 TIAS, putative uncharacterized protein; ATP hydrol 95.82
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 95.78
2pi2_A270 Replication protein A 32 kDa subunit; FULL-length 95.53
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 95.4
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 94.87
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 94.59
1o7i_A119 SSB, SSO2364, single stranded DNA binding protein; 93.82
3kdf_A121 Replication protein A 14 kDa subunit; wheat GERM c 93.56
3kf8_A220 Protein STN1; OB fold; 2.40A {Candida tropicalis m 93.33
1jmc_A246 Protein (replication protein A (RPA)); human ssDNA 93.29
4gop_C444 Putative uncharacterized protein; OB fold, ssDNA b 92.25
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 92.1
2kbn_A109 Conserved protein; nucleic acid binding protein, b 90.66
2hpi_A1220 DNA polymerase III alpha subunit; POL-beta-like nu 90.08
2pi2_E142 Replication protein A 14 kDa subunit; FULL-length 89.25
2k75_A106 Uncharacterized protein TA0387; closed beta barrel 88.96
4gop_A114 Putative uncharacterized protein; OB fold, ssDNA b 86.48
3fhw_A115 Primosomal replication protein N; PRIB BPR162 X-RA 85.97
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 82.52
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 80.75
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-135  Score=1130.32  Aligned_cols=573  Identities=38%  Similarity=0.685  Sum_probs=524.4

Q ss_pred             CccccccccccccCCCEEEEEEEEEeEeccCCeEEEEEEeCCeeEEEEECCCcH--HHHHHHhcCCCCcEEEEEeEEEeC
Q psy3762           1 MRTHYCGNITEKLLDQVISLCGWVHRKRNHGGIIFIDLRDYTGLVQIVFDPNDI--KIYKIAKIIRNEFCLQIIGKVCSR   78 (595)
Q Consensus         1 ~~t~~~~~l~~~~~g~~V~i~GwV~~~R~~g~l~Fi~LrD~~g~lQvv~~~~~~--~~~~~~~~l~~es~V~V~G~v~~~   78 (595)
                      +|||+|++|+.+++|++|+|+|||+++|.+   +|++|||++|.+|||++++..  ++++.++.|+.||+|.|+|+|+.+
T Consensus        10 ~rt~~~~~l~~~~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~   86 (617)
T 4ah6_A           10 VRTNTCGELRSSHLGQEVTLCGWIQYRRQN---TFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISR   86 (617)
T ss_dssp             SCSSCGGGCCGGGTTCEEEEEEEECCCCTT---TEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEEC
T ss_pred             cCceEHHHhHHHhCCCEEEEEEEeeeecCe---EEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence            589999999999999999999999999975   599999999999999987642  678889999999999999999999


Q ss_pred             CCCCCCCCcCCccEEEEEeeEEEeecCCCCCCccccc-CcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhh-hC
Q psy3762          79 PNKTNNTNLISGNIEILCRELKILNSSITLPFQIDEK-NILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLD-SK  156 (595)
Q Consensus        79 ~~~~~~~~~~~g~iEl~v~~i~vls~~~~lP~~~~~~-~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~-~~  156 (595)
                      |++..|+++++|++||+|++|+|||+|.++|+++++. ..++++|++|||||+|++.++++|++||.+++++|+||. ++
T Consensus        87 ~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~~lr~Rs~i~~~iR~f~~~~~  166 (617)
T 4ah6_A           87 PAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDLRSFQMQYNLRLRSQMVMKMREYLCNLH  166 (617)
T ss_dssp             STTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CccccCccCCCCcEEEEEeEEEEeecCCCCCcccccccccChhhhccceeeeecchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9888888899999999999999999998888887653 457899999999999999999999999999999999996 79


Q ss_pred             CCeeccCceeecCCCCCCccccccccCCCCCeeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccc
Q psy3762         157 KFIEIETPILSKSTPEGARDYLVPSRINPGEFFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCE  236 (595)
Q Consensus       157 gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e  236 (595)
                      ||+||+||+|++++|+||++|.++++ ..+.+|||+||||+|||+||++|++||||||||||+|+++++|+|||||||||
T Consensus       167 gF~EVeTPiL~~st~~GA~~F~v~~~-~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e  245 (617)
T 4ah6_A          167 GFVDIETPTLFKRTPGGAKEFLVPSR-EPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIE  245 (617)
T ss_dssp             CCEECCCCSSBCCCCSSSCCCEEECS-STTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEE
T ss_pred             CeEEEeCCeeccCCCCCCcCceeccc-cCCcccccccCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceee
Confidence            99999999999999999999988865 56789999999999999999999999999999999999999999999999999


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhcc
Q psy3762         237 TSFMNEEEIRNLFEEMIRVIFYKTLNIKLPNPFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMK  316 (595)
Q Consensus       237 ~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (595)
                      |+|++++|+|+++|+|++++++.+.+ ++..||+||||.|||.+||+||||+|++++++|+++++++++|.+|+..++.+
T Consensus       246 ~af~d~~d~m~~~E~l~~~~~~~~~~-~~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~  324 (617)
T 4ah6_A          246 MSFVDQTGIQSLIEGLLQYSWPNDKD-PVVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKP  324 (617)
T ss_dssp             EESCCHHHHHHHHHHHHHHHSCSSSC-CCCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTST
T ss_pred             ecCCCHHHHHHHHHHHHHHHHHHhcC-ccCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcC
Confidence            99999999999999999999876543 56679999999999999999999999999999999999999999999888767


Q ss_pred             CCeeEEEecCCCC-ccchhhhHHHHHHHHH-hCCCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeE
Q psy3762         317 NGRIIGLKIPGGF-SISRNEINYYTQFVKT-YGAKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDII  394 (595)
Q Consensus       317 ~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~  394 (595)
                      +++|++|++|+++ .++|+.++.+.++++. +|..++.++...+     .++++++.+++++++.++|.+.+++++||++
T Consensus       325 ~g~VkAI~vpg~a~~lsRK~id~L~e~ak~~~g~ggl~~~~~~d-----~~~~~~I~Kflsee~~~~L~e~l~a~~GDlI  399 (617)
T 4ah6_A          325 HGTVKAICIPEGAKYLKRKDIESIRNFAADHFNQEILPVFLNAN-----RNWNSPVANFIMESQRLELIRLMETQEEDVV  399 (617)
T ss_dssp             TEEEEEEEEESCTTTSCTTTHHHHHHHHHHSSCCCEEEECSSTT-----TTSSCTTHHHHHHHHHHHHHHHHTCCSSEEE
T ss_pred             CCeEEEEEcCCCccccchhhHHHHHHHHHHhcCCceEEEEEecC-----CccccchhhhcCHHHHHHHHHHhCCCCCCEE
Confidence            8999999999876 4799999999999999 7766655554433     3588999999999999999999999999999


Q ss_pred             EecCCchhhHHHHHHHHHHHhcccCccccc-----ccc-cCCCccEEEEecCCCcc-ccccccccccccCCCCCCC-CCC
Q psy3762         395 FLGGDEKNIVNNFMSALRIKIGYSDFGKRN-----NIL-NNKWHPLWVINFPMFKY-DKINNNWIARHHPFTAPKD-GYE  466 (595)
Q Consensus       395 ~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~-----~l~-~~~~~p~~V~dfP~~~~-~~~~~~~~a~~~PF~~~~~-~~~  466 (595)
                      ||++++...++++||++|..+++     ++     +++ ++.++|+||+|||+|++ ++++++|.|+|||||||+. |.+
T Consensus       400 ff~Ag~~~~v~~~LG~LR~~l~~-----~L~~~~~~l~~~~~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~  474 (617)
T 4ah6_A          400 LLTAGEHNKACSLLGKLRLECAD-----LLETRGVVLRDPTLFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIH  474 (617)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHHHH-----HHHTTSCCSCCTTSCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTST
T ss_pred             EEecCChHHHHHHHHHHHHHHHH-----HhhhccccccCCCCeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHH
Confidence            99999988999999999999998     55     366 56789999999999955 4577999999999999998 888


Q ss_pred             cccccCccccccceeeEEecCEEEeecccccCCHHHHHHHHH-HcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHH
Q psy3762         467 DFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIFK-VLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRL  545 (595)
Q Consensus       467 ~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~~-~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRL  545 (595)
                      .|. +||.+.++.+||||+||+||+|||+|+||+++|+++|+ .+|++.+    .|+|||+||+||+|||||||+|||||
T Consensus       475 ~l~-~~p~~~~a~~ydlv~~g~El~~gs~ri~~~~~q~~~f~~~~~~~~~----~~~~~l~a~~~G~pphgG~a~G~dRl  549 (617)
T 4ah6_A          475 LLY-TEPKKARSQHYDLVLNGNEIGGGSIRIHNAELQRYILATLLKEDVK----MLSHLLQALDYGAPPHGGIALGLDRL  549 (617)
T ss_dssp             HHH-HSTTSSBCCCEEEEETTEEEEEEECCCCSHHHHHHHHHHHCSSTHH----HHHHHHHHHTBTCCCEEEEEEEHHHH
T ss_pred             Hhh-cChhhhhhceEEEEECCEEEeeeeEEcCCHHHHHHHHHHhhccchh----hHHHHHHHHHcCCCCCCceeecHHHH
Confidence            887 89999999999999999999999999999999999999 8888753    69999999999999999999999999


Q ss_pred             HHHHcCCCCccccccCCCCCCccccCCCCCCcCChhhhhhcccccccc
Q psy3762         546 ITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKKT  593 (595)
Q Consensus       546 vm~l~g~~~IRdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  593 (595)
                      ||+++|.+||||||+|||+.+|+|||++||+.|+++||+||||+++.+
T Consensus       550 vml~~g~~~irdvi~fP~~~~~~d~~~~aP~~v~~~qL~el~i~~~~~  597 (617)
T 4ah6_A          550 ICLVTGSPSIRDVIAFPKSFRGHDLMSNTPDSVPPEELKPYHIRVSKP  597 (617)
T ss_dssp             HHHHHTCSSGGGSSSSCCCSSSCCSSSCCSBCCCGGGTTTTC------
T ss_pred             HHHHcCCCchheEEecCCCCCccccccCCCCCCCHHHHHhcCeeeccc
Confidence            999999999999999999999999999999999999999999998753
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} Back     alignment and structure
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 Back     alignment and structure
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 Back     alignment and structure
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A Back     alignment and structure
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} Back     alignment and structure
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A Back     alignment and structure
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A Back     alignment and structure
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* Back     alignment and structure
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C Back     alignment and structure
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} Back     alignment and structure
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} Back     alignment and structure
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 595
d1l0wa3356 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt 2e-52
d1l0wa3356 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt 2e-41
d1c0aa3346 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt 4e-49
d1c0aa3346 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt 2e-45
d1c0aa1106 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS 1e-32
d1c0aa2133 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert dom 3e-31
d1nnha_293 d.104.1.1 (A:) Hypothetical protein PF1951 {Archae 4e-31
d1nnha_293 d.104.1.1 (A:) Hypothetical protein PF1951 {Archae 2e-25
d1n9wa2304 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As 3e-30
d1n9wa2304 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As 4e-30
d1e1oa2342 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS 5e-29
d1e1oa2342 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS 1e-28
d1b8aa2335 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As 6e-29
d1b8aa2335 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As 1e-27
d1l0wa1104 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS 7e-29
d1eova2353 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As 3e-28
d1eova2353 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As 5e-27
d1b8aa1103 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS 3e-26
d1zq1c2131 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotrans 2e-25
d1l0wa2120 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert dom 3e-22
d1eova1134 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR 4e-21
d1n9wa193 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) 3e-20
d2d6fc2125 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotrans 1e-19
d1e1oa1143 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) 6e-07
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-1 [TaxId: 274]

 Score =  181 bits (460), Expect = 2e-52
 Identities = 78/169 (46%), Positives = 116/169 (68%)

Query: 424 NNILNNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDL 483
            ++    +  LWV++FP+ ++D+    W   HHPFT+P       +  +P ++ + AYDL
Sbjct: 187 PDLRREGFRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDL 246

Query: 484 IINGWEIGGGSIRIHDAEIQKKIFKVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLD 543
           ++NG E+GGGSIRIHD  +Q ++F++L I  +  + +FGF L +L+YGAPPHGGIA+GLD
Sbjct: 247 VLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLD 306

Query: 544 RLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELNILYKK 592
           RL+ +MTGS SIR+VIAFPK +  +  LT APS V E+QL EL ++  +
Sbjct: 307 RLLALMTGSPSIREVIAFPKNKEGKDPLTGAPSPVPEEQLRELGLMVVR 355
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 Back     information, alignment and structure
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain {Escherichia coli [TaxId: 562]} Length = 133 Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 Back     information, alignment and structure
>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]} Length = 131 Back     information, alignment and structure
>d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 120 Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 Back     information, alignment and structure
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 Back     information, alignment and structure
>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 125 Back     information, alignment and structure
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query595
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 100.0
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 100.0
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 100.0
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 100.0
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 100.0
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1c0aa1106 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 99.95
d1l0wa1104 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.92
d1b8aa1103 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 99.92
d1n9wa193 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.85
d1eova1134 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 99.79
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 99.75
d1e1oa1143 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 99.74
d1c0aa2133 Prokaryotic AspRS, insert domain {Escherichia coli 99.71
d1l0wa2120 Prokaryotic AspRS, insert domain {Thermus thermoph 99.58
d1zq1c2131 Glutamyl-tRNA(gln) amidotransferase subunit E, Gat 99.2
d2d6fc2125 Glutamyl-tRNA(gln) amidotransferase subunit E, Gat 99.16
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 99.06
d12asa_327 Asparagine synthetase {Escherichia coli [TaxId: 56 98.21
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 98.16
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 98.09
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 98.06
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 97.97
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 97.92
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 97.82
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 97.74
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 97.67
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 97.46
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 97.15
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 97.09
d2pi2a1128 Replication protein A 32 KDa subunit (RPA32) fragm 96.57
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 96.5
d1nnxa_106 Hypothetical protein YgiW {Escherichia coli [TaxId 96.31
d1jmca1116 Replication protein A 70 KDa subunit (RPA70) {Huma 96.23
d1o7ia_115 Archaeal ssDNA-binding protein {Archaeon Sulfolobu 94.38
d2pi2e1115 Replication protein A 14 KDa (RPA14) subunit {Huma 93.61
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 89.87
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 89.72
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 81.77
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 81.67
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 80.32
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-81  Score=655.29  Aligned_cols=345  Identities=49%  Similarity=0.856  Sum_probs=289.0

Q ss_pred             CCCcccccCcchhhhccccchhhccHhhHHHHHHHHHHHHHHHHHhhhCCCeeccCceeecCCCCCCccccccccCCCCC
Q psy3762         108 LPFQIDEKNILEVTNLKYRVLYLRYKHMQKNLRLRYKVTMEVRKFLDSKKFIEIETPILSKSTPEGARDYLVPSRINPGE  187 (595)
Q Consensus       108 lP~~~~~~~~~~~~r~~~r~l~lr~~~~~~~l~~rs~i~~~iR~ff~~~gF~EV~TPiL~~~~~~ga~~f~~~~~~~~~~  187 (595)
                      +|.+.+. ..++++|++|||||||++..+++|++||.|++++|+||.++||+||+||+|++++++|+..+..+...+.++
T Consensus         2 lP~~~~~-~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~   80 (346)
T d1c0aa3           2 LPLDSNH-VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGK   80 (346)
T ss_dssp             CSSCTTS-CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTC
T ss_pred             CCCCCCC-CCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCccccccccccccCCCc
Confidence            5666554 567899999999999999999999999999999999999999999999999999999987765666667788


Q ss_pred             eeeccCChHHHHHHHHhhCCCceEEEecceecCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Q psy3762         188 FFALPQSPQLFKQLLMVANFDRYYQITKCFRDEDLRSDRQPEFTQIDCETSFMNEEEIRNLFEEMIRVIFYKTLNIKLPN  267 (595)
Q Consensus       188 ~~~L~~Spql~~q~ll~~g~~rvf~i~~~FR~E~~~~~r~~EFt~lE~e~~~~~~~dl~~~~E~ll~~l~~~~~~~~~~~  267 (595)
                      .+||+||||+|||+++++|++|||+||||||+|+++++||+||||||||++|.+++++|+++|+++++++..+.+.++ .
T Consensus        81 ~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~~~~~m~~~E~li~~l~~~~~~~~~-~  159 (346)
T d1c0aa3          81 FYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDL-G  159 (346)
T ss_dssp             EEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHHSCCC-C
T ss_pred             cccCCcCHHHHHHHHhhcCCCceEEEeeeccccccCchhhhHhhhhccccccccHhHhHHHHHHHHHHHHHHHhCCcC-C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998876 6


Q ss_pred             CCccccHHHHHHHhCCCCCccccchhhcchhhhhhccchhhHHHHhhccCCeeEEEecCCCCccchhhhHHHHHHHHHhC
Q psy3762         268 PFPVIEWSTAIKLYGSDKPDMCIKLIFTDLTNIMKDSDFKLFSKIANMKNGRIIGLKIPGGFSISRNEINYYTQFVKTYG  347 (595)
Q Consensus       268 ~f~rity~ea~~~~~~d~p~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  347 (595)
                      +|++++|.+|+.+|+.+.++++.......                       .....+                      
T Consensus       160 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~~----------------------  194 (346)
T d1c0aa3         160 DFPVMTFAEAERRYGSDKPDLRDESKWAP-----------------------LWVIDF----------------------  194 (346)
T ss_dssp             SCCEEEHHHHHHHHSCSSCCTTCSSCCCE-----------------------EEEECC----------------------
T ss_pred             ccceeeHHHHHHHhcccccchhhHhhhhh-----------------------hccccc----------------------
Confidence            89999999999999988876542110000                       000000                      


Q ss_pred             CCCceEEEEeccccccCCCCcccccccCHHHHHHHHHHhcCcCCCeEEecCCchhhHHHHHHHHHHHhcccCcccccccc
Q psy3762         348 AKGLTYIKIHKISKEFDGLKSPIIKYFNNLILEKIINKTEAQNGDIIFLGGDEKNIVNNFMSALRIKIGYSDFGKRNNIL  427 (595)
Q Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~lg~~r~~l~~~~~~~~~~l~  427 (595)
                                           +.                         +..                .+.          
T Consensus       195 ---------------------~~-------------------------~~~----------------~~~----------  202 (346)
T d1c0aa3         195 ---------------------PM-------------------------FED----------------DGE----------  202 (346)
T ss_dssp             ---------------------BS-------------------------EEE----------------CSS----------
T ss_pred             ---------------------cc-------------------------cch----------------hcc----------
Confidence                                 00                         000                000          


Q ss_pred             cCCCccEEEEecCCCccccccccccccccCCCCCCCCCCcccccCccccccceeeEEecCEEEeecccccCCHHHHHHHH
Q psy3762         428 NNKWHPLWVINFPMFKYDKINNNWIARHHPFTAPKDGYEDFIITNPEKIFSKAYDLIINGWEIGGGSIRIHDAEIQKKIF  507 (595)
Q Consensus       428 ~~~~~p~~V~dfP~~~~~~~~~~~~a~~~PF~~~~~~~~~l~~~dp~~~~~~~fDl~~~G~Ei~gGs~R~~d~~~~~~~~  507 (595)
                      .....+++++++|..            ..||++.         .+|...++++|||+++|+||+|||+|+||+++|+++|
T Consensus       203 ~~l~~~~~~~~~p~~------------~~~~~~~---------~~~~~~~a~~fdl~~~G~El~nG~~rl~d~~~~~~r~  261 (346)
T d1c0aa3         203 GGLTAMHHPFTSPKD------------MTAAELK---------AAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVF  261 (346)
T ss_dssp             SCEEESSCTTBCBSS------------CCHHHHH---------HSCTTCBBSEEEEEETTEEEEEEEEBCCCHHHHHHHH
T ss_pred             cceeeeEeeccccch------------hhHHHhc---------cCCccccccccccCcCCEEEechhhhhchHHHHHHHH
Confidence            000111222333432            1334332         2333478999999999999999999999999999999


Q ss_pred             HHcCCChhhhhhcHHHHHHHhhCCCCCccceeccHHHHHHHHcCCCCccccccCCCCCCccccCCCCCCcCChhhhhhcc
Q psy3762         508 KVLNIDNKIVKTQFGFLLNSLKYGAPPHGGIAFGLDRLITIMTGSKSIRDVIAFPKTQSAQCLLTNAPSIVDEKQLNELN  587 (595)
Q Consensus       508 ~~~g~~~~~~~~~~~~yL~al~~G~PPh~G~glGlDRLvm~l~g~~~IRdvi~FPr~~~~~~~~~~~p~~~~~~~l~~~~  587 (595)
                      ++.|+++.+..+.|.|||+|++||+|||||||||+|||+|+++|.+|||||++|||++++.|||++||+.++.+||++||
T Consensus       262 ~~~~~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~~~Irdvi~FPRt~~~~~~~~~~p~~~~~~~~~~~~  341 (346)
T d1c0aa3         262 GILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELS  341 (346)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSCBTTTTBSCCCCHHHHHHTT
T ss_pred             HHhCccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCCCcHHheecCCCCCCCCCcccCCCCCCCHHHHHhhC
Confidence            99999988777789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3762         588 ILYKK  592 (595)
Q Consensus       588 ~~~~~  592 (595)
                      |+++.
T Consensus       342 ~~~~~  346 (346)
T d1c0aa3         342 IQVVK  346 (346)
T ss_dssp             CCCCC
T ss_pred             eEeeC
Confidence            99874
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l0wa2 d.74.4.1 (A:295-414) Prokaryotic AspRS, insert domain {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1zq1c2 d.74.4.1 (C:277-407) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2d6fc2 d.74.4.1 (C:271-395) Glutamyl-tRNA(gln) amidotransferase subunit E, GatE, insert domain {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure