Psyllid ID: psy3775

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT
ccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEcccccHHHHHccccccccHHHHHHHHHHHcccccccccEEEEEEEcccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEEcccccccccEEEEEccccccEEEEEEEccccccccccccccccccccccccccEEEEEcccccHHHHHccccccEEEEEEEEEEHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHccEEEEEcccccHHHHHHHHHccEEEEEcccHHHHHHHHHcccEEEEccccccccEEEEEEEEccccc
ccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccEEEcccccccHHHHHHHHHHHHccccccccEEEEEcccccccccccccccEEEEEEEEcccEEEEEEEEcccccHcccHEHEcccccHHHHHHHHHccccccccccccEEEEEEcccHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEcccccccccEEEEEccccccEEEEEEcccccEEcccccHHcccccEcccccccEEEEEcccccHHHHHccccccEEEEcccEEEHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccEEccccccccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHccEEEcHHcccEEEEEEEEcccccc
MEKGIAAKDAIAQILINSRmcakekrpicqdtgIVNVFLKIGMnvrfkgfngsihDVINegvrrgytnpnnilrasivsdphfirkntqdntpavinmelvpgnfldikiaskgggsenktkfamlnpsdsLVDWIMKtvptmgagwcppgilgigiggtPEKAMLMAKKVLMQDINmnsiikngpknkIEELRLELFNKINSlgigaqgmgglsTVLDVKImmypthaaskpvaiipncaatrhghiilngsgpvfmkppslsnwpkikfttnnkkFHYVNLNTLTKKEVSSWRSGEILLlngkiltgrdAAHNRIQYMLskgekipvnfnNRVIYyvgpinpvrnevigpagpttasrMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASkgggsenkTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTltkkevsswrsGEILLLngkiltgrdAAHNRIQYMLskgekipvnfNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPgilgigiggTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDkiiklikkqkiAYLVAVGGAAYLiskaiksakiiCFEDLGMEAIYEFNVENMPVT
*******KDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIAS**********FAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNV******
*E*GIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKF*****KFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT
MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT
**KGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENM***
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MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGMEAIYEFNVENMPVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
P14407548 Fumarate hydratase class N/A N/A 0.952 0.764 0.297 2e-42
P0AC33548 Fumarate hydratase class N/A N/A 0.947 0.760 0.316 2e-42
P0AC34548 Fumarate hydratase class yes N/A 0.947 0.760 0.316 2e-42
Q8X4P8548 Fumarate hydratase class N/A N/A 0.947 0.760 0.316 7e-42
P40720580 Fumarate hydratase class no N/A 0.95 0.720 0.299 2e-39
Q04718514 Fumarate hydratase class N/A N/A 0.934 0.799 0.256 9e-35
Q58690285 Putative fumarate hydrata yes N/A 0.522 0.807 0.366 2e-25
Q58034195 Putative fumarate hydrata no N/A 0.352 0.794 0.371 4e-21
Q8XBK7303 L(+)-tartrate dehydratase N/A N/A 0.495 0.719 0.294 1e-15
Q1R6S0303 L(+)-tartrate dehydratase no N/A 0.481 0.699 0.302 3e-15
>sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic OS=Escherichia coli (strain K12) GN=fumB PE=1 SV=2 Back     alignment and function desciption
 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 211/443 (47%), Gaps = 24/443 (5%)

Query: 13  QILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNI 72
           Q L NS + AK   P CQDTG   +  K G  V   G +    + +++GV   Y   +N+
Sbjct: 89  QFLRNSEIAAKGVLPTCQDTGTAIIVGKKGQRVWTGGGD---EETLSKGVYNTYIE-DNL 144

Query: 73  LRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKF-----AMLN 127
             +   +   +   NT  N PA I++  V G+       +KGGGS NKT       A+L 
Sbjct: 145 RYSQNAALDMYKEVNTGTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLT 204

Query: 128 PSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSII----- 182
           P   L +++++ + T+G   CPP  +   IGGT  +  L  K V +   +    +     
Sbjct: 205 PG-KLKNFLVEKMRTLGTAACPPYHIAFVIGGTSAETNL--KTVKLASAHYYDELPTEGN 261

Query: 183 KNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCAA 242
           ++G   +  +L  EL  +   LG+GAQ  GG     D++++  P H AS PV +  +C+A
Sbjct: 262 EHGQAFRDVQLEQELLEEAQKLGLGAQ-FGGKYFAHDIRVIRLPRHGASCPVGMGVSCSA 320

Query: 243 TRHGHIILNGSGPVFMKPPSLSNW--PKIKFTTNNKKFHYVNLNTLTKK---EVSSWRSG 297
            R+    +N  G    K         P+        +   V+LN   K+   ++S +   
Sbjct: 321 DRNIKAKINREGIWIEKLEHNPGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVS 380

Query: 298 EILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTT 357
             L L G I+ GRD AH +++ ++  G+++P    +  IYY GP         G  GPTT
Sbjct: 381 TRLSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTT 440

Query: 358 ASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGG-AAYLISKAIKSA 416
           A RMD + +L+    G + M+ K  RS ++     K    YL ++GG AA L  ++IK  
Sbjct: 441 AGRMDSYVDLLQSHGGSMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQQSIKHL 500

Query: 417 KIICFEDLGMEAIYEFNVENMPV 439
           + + + +LGMEAI++  VE+ P 
Sbjct: 501 ECVAYPELGMEAIWKIEVEDFPA 523
It functions in the generation of fumarate for use as an anaerobic electron acceptor.
Escherichia coli (strain K12) (taxid: 83333)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic OS=Escherichia coli (strain K12) GN=fumA PE=1 SV=2 Back     alignment and function description
>sp|P0AC34|FUMA_ECOL6 Fumarate hydratase class I, aerobic OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fumA PE=3 SV=2 Back     alignment and function description
>sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic OS=Escherichia coli O157:H7 GN=fumA PE=3 SV=3 Back     alignment and function description
>sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fumA PE=3 SV=3 Back     alignment and function description
>sp|Q04718|FUMA_GEOSE Fumarate hydratase class I, aerobic OS=Geobacillus stearothermophilus GN=fumA PE=3 SV=1 Back     alignment and function description
>sp|Q58690|FUMA_METJA Putative fumarate hydratase subunit alpha OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1294 PE=3 SV=1 Back     alignment and function description
>sp|Q58034|FUMB_METJA Putative fumarate hydratase subunit beta OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0617 PE=3 SV=1 Back     alignment and function description
>sp|Q8XBK7|TTDA_ECO57 L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli O157:H7 GN=ttdA PE=3 SV=1 Back     alignment and function description
>sp|Q1R6S0|TTDA_ECOUT L(+)-tartrate dehydratase subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=ttdA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
340788535518 fumarate hydratase class I, aerobic [Col 0.997 0.847 0.740 0.0
409405380513 fumarate hydratase [Herbaspirillum sp. G 0.997 0.855 0.738 0.0
415942121513 Fumarate hydratase protein [Herbaspirill 0.997 0.855 0.738 0.0
300310873513 fumarate hydratase [Herbaspirillum serop 0.997 0.855 0.738 0.0
399019450513 hydro-lyase, Fe-S type, tartrate/fumarat 1.0 0.857 0.731 0.0
398835699513 hydro-lyase, Fe-S type, tartrate/fumarat 0.997 0.855 0.731 0.0
152980967512 fumarate hydratase, class I [Janthinobac 0.997 0.857 0.717 0.0
395761117513 fumarate hydratase [Janthinobacterium li 0.997 0.855 0.724 0.0
134094155512 fumarase A [Herminiimonas arsenicoxydans 0.997 0.857 0.715 0.0
427402993511 hydrolyase, tartrate alpha subunit/fumar 0.997 0.859 0.717 0.0
>gi|340788535|ref|YP_004754000.1| fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] gi|340553802|gb|AEK63177.1| Fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/439 (74%), Positives = 395/439 (89%)

Query: 2   EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
           E+  AAKDAIAQIL NSRMCA+ KRPICQDTGIVNVFLKIGM+VRF+GF GSI D +NEG
Sbjct: 45  EQSPAAKDAIAQILTNSRMCAEGKRPICQDTGIVNVFLKIGMDVRFEGFKGSITDAVNEG 104

Query: 62  VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
           VRRGY NP+N+LRASIV+DP F RKNT+DNTPAV++MELVPGN +D++IA+KGGGSENKT
Sbjct: 105 VRRGYLNPDNMLRASIVADPQFERKNTKDNTPAVVHMELVPGNTVDVQIAAKGGGSENKT 164

Query: 122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINMNSI 181
           KF MLNPSDSLVDW+MKTVPTMGAGWCPPG+LGIGIGGT E+AMLMAK+VLM+DI+M  +
Sbjct: 165 KFVMLNPSDSLVDWVMKTVPTMGAGWCPPGMLGIGIGGTAERAMLMAKQVLMEDIDMYDL 224

Query: 182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
           +K GP+NK EELR+ELF K+N+LGIGAQG+GGL+TVLDVKIMM+PTHAASKPVA+IPNCA
Sbjct: 225 LKRGPQNKTEELRIELFQKVNALGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCA 284

Query: 242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
           ATRHGH +L+GSGP +M+PPSLS WP++ +  + +K   V+LNTLTK+EV+SW+ G+ LL
Sbjct: 285 ATRHGHFVLDGSGPAYMEPPSLSEWPEVHWVPDTEKSKRVDLNTLTKEEVASWKPGQTLL 344

Query: 302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRM 361
           LNGK+LTGRDAAH RIQ ML+KGEK+PV+F NRVIYYVGP++PVR+EV+GPAGPTTA+RM
Sbjct: 345 LNGKMLTGRDAAHKRIQEMLAKGEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRM 404

Query: 362 DHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICF 421
           D FT+++LE+ GLI+MIGK+ER    I+ IK+ K AYL+AVGGAAYL+SKAIKSA+++ F
Sbjct: 405 DKFTDMMLEQTGLISMIGKSERGPVAIESIKQHKSAYLMAVGGAAYLVSKAIKSAQVLGF 464

Query: 422 EDLGMEAIYEFNVENMPVT 440
            DLGMEAIYEF+V++MPVT
Sbjct: 465 ADLGMEAIYEFDVKDMPVT 483

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|409405380|ref|ZP_11253842.1| fumarate hydratase [Herbaspirillum sp. GW103] gi|386433929|gb|EIJ46754.1| fumarate hydratase [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|415942121|ref|ZP_11555849.1| Fumarate hydratase protein [Herbaspirillum frisingense GSF30] gi|407758908|gb|EKF68672.1| Fumarate hydratase protein [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|300310873|ref|YP_003774965.1| fumarate hydratase [Herbaspirillum seropedicae SmR1] gi|124483326|emb|CAM32536.1| Fumarate hydratase protein [Herbaspirillum seropedicae] gi|300073658|gb|ADJ63057.1| fumarate hydratase protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|399019450|ref|ZP_10721598.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. CF444] gi|398098060|gb|EJL88353.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|398835699|ref|ZP_10593058.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. YR522] gi|398215504|gb|EJN02066.1| hydro-lyase, Fe-S type, tartrate/fumarate subfamily [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|152980967|ref|YP_001352570.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] gi|151281044|gb|ABR89454.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|395761117|ref|ZP_10441786.1| fumarate hydratase [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|134094155|ref|YP_001099230.1| fumarase A [Herminiimonas arsenicoxydans] gi|133738058|emb|CAL61103.1| putative fumarate hydratase class I, aerobic (Fumarase) (FumA-like) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|427402993|ref|ZP_18893990.1| hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type [Massilia timonae CCUG 45783] gi|425718176|gb|EKU81127.1| hydrolyase, tartrate alpha subunit/fumarate domain-containing protein, Fe-S type [Massilia timonae CCUG 45783] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
UNIPROTKB|Q9KSF2505 VC1304 "Fumarate hydratase, cl 0.995 0.867 0.564 3.7e-135
TIGR_CMR|CPS_3613507 CPS_3613 "putative fumarate hy 0.995 0.863 0.574 3.7e-135
TIGR_CMR|VC_1304505 VC_1304 "fumarate hydratase, c 0.995 0.867 0.564 3.7e-135
TIGR_CMR|SO_2222516 SO_2222 "fumarate hydratase, c 0.995 0.848 0.564 1.2e-134
TIGR_CMR|SPO_1498502 SPO_1498 "fumarate hydratase, 0.995 0.872 0.496 8.8e-118
TIGR_CMR|CHY_1375280 CHY_1375 "fumarate hydratase, 0.543 0.853 0.428 1.8e-46
TIGR_CMR|DET_0453280 DET_0453 "fumarate hydratase, 0.534 0.839 0.403 1.3e-43
TIGR_CMR|CHY_0061281 CHY_0061 "fumarate hydratase, 0.545 0.854 0.421 1.5e-42
TIGR_CMR|GSU_0994541 GSU_0994 "fumarate hydratase, 0.963 0.783 0.309 4.6e-41
UNIPROTKB|P14407548 fumB [Escherichia coli K-12 (t 0.954 0.766 0.290 3.4e-38
UNIPROTKB|Q9KSF2 VC1304 "Fumarate hydratase, class I, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 249/441 (56%), Positives = 329/441 (74%)

Query:     2 EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
             E+  AAKD+IAQILINSRM A+  RPICQDTGIV  F+ IGM V++   + ++  +++EG
Sbjct:    39 EESQAAKDSIAQILINSRMSAEGHRPICQDTGIVTCFVNIGMGVQWDSTDMTVQQMVDEG 98

Query:    62 VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
             VR+ YTNP+N LRAS++ DP   R NT+DNTPAV+++ +VPG+ +DI+IA+KGGGSENKT
Sbjct:    99 VRQAYTNPDNPLRASVLMDPAGKRINTKDNTPAVVHINMVPGDKVDIQIAAKGGGSENKT 158

Query:   122 KFAMLNPSDSLVDWIMKTVPTMGAGWCPPXXXXXXXXXTPEKAMLMAKKVLMQDINMNSI 181
             K  MLNPSD + +W+ KTVP MGAGWCPP         T EKA ++AK+ LM+ I+++ +
Sbjct:   159 KMVMLNPSDDIAEWVEKTVPLMGAGWCPPGMLGIGIGGTAEKAAVLAKEALMEHIDIHEL 218

Query:   182 IKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIPNCA 241
             I+ GP+N  EELRL++FN++N LGIGAQG+GGL+TV+DVKI   PTHAASKPV +IPNCA
Sbjct:   219 IERGPQNAEEELRLDIFNRVNKLGIGAQGLGGLTTVVDVKIKSAPTHAASKPVCMIPNCA 278

Query:   242 ATRHGHIILNGSGPVFMKPPSLSNWPKIKFTTNNKKFHYVNLNTLTKKEVSSWRSGEILL 301
             ATRH H  L+GSGP  + PP L +WP+I +         VNL+ +T++E+ +W++GE +L
Sbjct:   279 ATRHVHFTLDGSGPAQLTPPKLEDWPQITWEAGANT-RRVNLDNITREEIQTWKTGETVL 337

Query:   302 LNGKILTGRDAAHNRIQYMLSKGEKIP--VNFNNRVIYYVGPINPVRNEVIGPAGPTTAS 359
             L+GKILTGRDAAH RIQ ML KGEK+P  V+  ++ IYYVGP++ V +EV+GPAGPTT++
Sbjct:   338 LSGKILTGRDAAHKRIQTMLQKGEKLPDSVDLKDKFIYYVGPVDAVGDEVVGPAGPTTST 397

Query:   360 RMDHFTNLILEKIGLIAMIGKAERSDXXXXXXXXXXXAYLVAVGGAAYLXXXXXXXXXXX 419
             RMD FT+++LE++G++ MIGKAER              YL+AVGGAAYL           
Sbjct:   398 RMDKFTDMMLEEVGVMGMIGKAERGPATVESIKKHKAVYLMAVGGAAYLVAKAIKKARVV 457

Query:   420 CFEDLGMEAIYEFNVENMPVT 440
              FEDLGMEAIYEF VE+MPVT
Sbjct:   458 AFEDLGMEAIYEFEVEDMPVT 478
GO:0004333 "fumarate hydratase activity" evidence=ISS
GO:0006099 "tricarboxylic acid cycle" evidence=ISS
TIGR_CMR|CPS_3613 CPS_3613 "putative fumarate hydratase, class I" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1304 VC_1304 "fumarate hydratase, class I, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2222 SO_2222 "fumarate hydratase, class I, anaerobic, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1498 SPO_1498 "fumarate hydratase, class I, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1375 CHY_1375 "fumarate hydratase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0453 DET_0453 "fumarate hydratase, alpha subunit, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0061 CHY_0061 "fumarate hydratase, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0994 GSU_0994 "fumarate hydratase, class I" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P14407 fumB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0AC34FUMA_ECOL64, ., 2, ., 1, ., 20.31680.94770.7609yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.1LOW CONFIDENCE prediction!
4th Layer4.2.1.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
pfam05681271 pfam05681, Fumerase, Fumarate hydratase (Fumerase) 1e-127
COG1951297 COG1951, TtdA, Tartrate dehydratase alpha subunit/ 1e-115
pfam05683205 pfam05683, Fumerase_C, Fumarase C-terminus 4e-98
PRK06246280 PRK06246, PRK06246, fumarate hydratase; Provisiona 3e-87
COG1838184 COG1838, FumA, Tartrate dehydratase beta subunit/F 5e-69
PTZ00226570 PTZ00226, PTZ00226, fumarate hydratase; Provisiona 4e-65
TIGR00722273 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type 8e-59
PRK15389536 PRK15389, PRK15389, fumarate hydratase; Provisiona 2e-56
PLN00133576 PLN00133, PLN00133, class I-fumerate hydratase; Pr 1e-52
PRK06842185 PRK06842, PRK06842, fumarate hydratase; Provisiona 7e-52
PRK15391548 PRK15391, PRK15391, fumarate hydratase FumB; Provi 3e-50
PRK15390548 PRK15390, PRK15390, fumarate hydratase FumA; Provi 2e-48
PRK15392550 PRK15392, PRK15392, putative fumarate hydratase; P 4e-47
TIGR00723168 TIGR00723, ttdB_fumA_fumB, hydro-lyases, Fe-S type 1e-41
PRK06043192 PRK06043, PRK06043, fumarate hydratase; Provisiona 1e-31
PRK08395162 PRK08395, PRK08395, fumarate hydratase; Provisiona 1e-23
PRK08230299 PRK08230, PRK08230, tartrate dehydratase subunit a 2e-23
PRK08228204 PRK08228, PRK08228, L(+)-tartrate dehydratase subu 1e-11
>gnl|CDD|218689 pfam05681, Fumerase, Fumarate hydratase (Fumerase) Back     alignment and domain information 
 Score =  367 bits (945), Expect = e-127
 Identities = 129/252 (51%), Positives = 166/252 (65%), Gaps = 14/252 (5%)

Query: 2   EKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEG 61
           E+   AK  +AQIL N+ + A+ KRPICQDTG   VF+KIG  V      G + + INEG
Sbjct: 31  EESPLAKFVLAQILENAEIAAEGKRPICQDTGTAVVFVKIGQEVPI---EGDLEEAINEG 87

Query: 62  VRRGYTNPNNILRASIVSDPHFIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKT 121
           VRR YT     LR S+V+DP   RKNT DNTPAVI++E+VPG+ L+I +A+KGGGSENK+
Sbjct: 88  VRRAYTEGP--LRPSVVADP-LERKNTGDNTPAVIHIEIVPGDELEITVAAKGGGSENKS 144

Query: 122 KFAMLNPSD---SLVDWIMKTVPTMGAGWCPPGILGIGIGGTPEKAMLMAKKVLMQDINM 178
           K AMLNPSD    +  ++++TV   G   CPPG++G+GIGGT EKA L+AKK L++ ++ 
Sbjct: 145 KLAMLNPSDGIEGIKKFVLETVKEAGPNACPPGVVGVGIGGTSEKAALLAKKALLRPVDE 204

Query: 179 NSIIKNGPKNKIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYPTHAASKPVAIIP 238
            +     P  +  EL  EL  KIN LGIG QG+GG +T LDVKI   P H AS PVA+  
Sbjct: 205 RN-----PDPRDAELEEELLEKINKLGIGPQGLGGKTTALDVKIERAPRHIASLPVAVNV 259

Query: 239 NCAATRHGHIIL 250
           NC A RH    +
Sbjct: 260 NCWADRHATAKI 271

This family consists of several bacterial fumarate hydratase proteins FumA and FumB. Fumarase, or fumarate hydratase (EC 4.2.1.2), is a component of the citric acid cycle. In facultative anaerobes such as Escherichia coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre. Length = 271
>gnl|CDD|224862 COG1951, TtdA, Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|218690 pfam05683, Fumerase_C, Fumarase C-terminus Back     alignment and domain information
>gnl|CDD|180486 PRK06246, PRK06246, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|224751 COG1838, FumA, Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|240319 PTZ00226, PTZ00226, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|233103 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region Back     alignment and domain information
>gnl|CDD|237955 PRK15389, PRK15389, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|215068 PLN00133, PLN00133, class I-fumerate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|180724 PRK06842, PRK06842, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|185289 PRK15391, PRK15391, fumarate hydratase FumB; Provisional Back     alignment and domain information
>gnl|CDD|185288 PRK15390, PRK15390, fumarate hydratase FumA; Provisional Back     alignment and domain information
>gnl|CDD|185290 PRK15392, PRK15392, putative fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|129806 TIGR00723, ttdB_fumA_fumB, hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region Back     alignment and domain information
>gnl|CDD|180366 PRK06043, PRK06043, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|169425 PRK08395, PRK08395, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|181309 PRK08230, PRK08230, tartrate dehydratase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|236192 PRK08228, PRK08228, L(+)-tartrate dehydratase subunit beta; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
PRK15389536 fumarate hydratase; Provisional 100.0
PRK15392550 putative fumarate hydratase; Provisional 100.0
PTZ00226570 fumarate hydratase; Provisional 100.0
PLN00133576 class I-fumerate hydratase; Provisional 100.0
PRK15390548 fumarate hydratase FumA; Provisional 100.0
PRK15391548 fumarate hydratase FumB; Provisional 100.0
PRK08230299 tartrate dehydratase subunit alpha; Validated 100.0
PRK06246280 fumarate hydratase; Provisional 100.0
TIGR00722273 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/f 100.0
PF05681271 Fumerase: Fumarate hydratase (Fumerase); InterPro: 100.0
COG1951297 TtdA Tartrate dehydratase alpha subunit/Fumarate h 100.0
PF05683205 Fumerase_C: Fumarase C-terminus; InterPro: IPR0046 100.0
PRK06842185 fumarate hydratase; Provisional 100.0
COG1838184 FumA Tartrate dehydratase beta subunit/Fumarate hy 100.0
PRK06043192 fumarate hydratase; Provisional 100.0
PRK08228204 L(+)-tartrate dehydratase subunit beta; Validated 100.0
TIGR00723168 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/f 100.0
PRK08395162 fumarate hydratase; Provisional 100.0
>PRK15389 fumarate hydratase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.1e-156  Score=1220.80  Aligned_cols=428  Identities=31%  Similarity=0.483  Sum_probs=408.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhcCCCcccccCCceEEEEEeCceeeecCCCccHHHHHHHHHHHhhcCCCCCccCCCCCC
Q psy3775           1 MEKGIAAKDAIAQILINSRMCAKEKRPICQDTGIVNVFLKIGMNVRFKGFNGSIHDVINEGVRRGYTNPNNILRASIVSD   80 (440)
Q Consensus         1 ~E~s~~ak~vl~~il~N~~iA~~~~~PlCQDTG~~~~fv~~G~~v~~~g~~~~l~~ai~egv~~a~~~~~~~LR~s~V~d   80 (440)
                      +|+|++||++|++||+|++||++.++|+|||||+++||+++|++|+ .|  ++|++||++|||+||+  ++|||+|+|+ 
T Consensus        76 ~E~s~~ak~vl~~ileN~~iA~~~~~P~CQDTG~~~vfv~iG~~v~-~g--~~l~~aI~eGV~~ay~--~~pLR~svV~-  149 (536)
T PRK15389         76 PEASDNDKFVALDLLKNANIAAGGVLPMCQDTGTAIIMGKKGQRVW-TG--GDDEEALSRGVYDTYT--ELNLRYSQNA-  149 (536)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcCCCccccCCCcEEEEEEeCCCCC-CC--chHHHHHHHHHHHHhc--cCCcchhhcC-
Confidence            4889999999999999999999999999999999999999999999 54  4799999999999999  8999999995 


Q ss_pred             CC--cCccCCCCCCceeEEEEeeCCCEEEEEEEecCCCCcccccccccCCc----hhHHHHHHHHhhhcCCCCCCCceeE
Q psy3775          81 PH--FIRKNTQDNTPAVINMELVPGNFLDIKIASKGGGSENKTKFAMLNPS----DSLVDWIMKTVPTMGAGWCPPGILG  154 (440)
Q Consensus        81 pl--~~r~NtgdNtpa~i~~~~v~gd~l~i~~~~KGgGSEn~s~l~ml~P~----~~v~~fv~e~V~~aG~~~CPP~~vG  154 (440)
                      |+  |+|+||+||||++||+++|+||+++|+|+||||||||||+++|++|+    +||++||+|+|.++|+|||||++||
T Consensus       150 pl~~~~r~Nt~dNtpa~I~~~~v~gD~l~I~v~~KGgGSEN~s~l~ml~pa~L~p~gI~~fVle~V~~aG~~~CPP~iVG  229 (536)
T PRK15389        150 PLDMYEEKNTGTNLPAQIDIYATEGDEYKFLFMAKGGGSANKTFLYQETKALLNPDRLLAFLVEKMRTLGTAACPPYHLA  229 (536)
T ss_pred             CCCcccccCCCCCcCcEEEEEEeCCCEEEEEEEecCCCccchhheeecccccCCHHHHHHHHHHHHHHcCCCCCCCceEE
Confidence            54  49999999999999999999999999999999999999999995555    5999999999999999999999999


Q ss_pred             EEEcCC-HHHHHHHHHHHhcccCcccchhcc----CCCh---hHHHHHHHHHHHHHhcCCccCCCCCceeEEEEEEeecC
Q psy3775         155 IGIGGT-PEKAMLMAKKVLMQDINMNSIIKN----GPKN---KIEELRLELFNKINSLGIGAQGMGGLSTVLDVKIMMYP  226 (440)
Q Consensus       155 VGIGGt-~d~a~~LaK~Al~r~~~~~~~~~~----~~~~---~~a~lE~eLle~iN~lGIGp~GlGG~tTaL~V~Ie~~p  226 (440)
                      |||||| +|+|++|||+||+|++|     ++    ||+|   ++|+||+||||+||+|||||| |||+||||+|||+++|
T Consensus       230 VGIGGt~~e~aa~LAK~AllR~~~-----~~~~~~~~~p~~~~~a~lE~eLle~IN~lGIGp~-lGG~tTaL~V~Ie~~p  303 (536)
T PRK15389        230 IVIGGTSAEANLKTVKLASAKYLD-----ALPTEGNEHGHAFRDLELEQEVLKLTQKLGIGAQ-FGGKYFCHDVRVIRLP  303 (536)
T ss_pred             EEeCCCHHHHHHHHHHHHhhCccC-----CccccCCCcccchHHHHHHHHHHHHHHhhCcCcc-cCCCeEEEEEEEeecC
Confidence            999999 99999999999999999     77    7778   999999999999999999999 9999999999999999


Q ss_pred             cccccCcEEEeecccccceeEEEEeCCCcee--cCCCCCCCCcccccccCCCceEEEEcC-CCCH--HHHhcCCCCCEEE
Q psy3775         227 THAASKPVAIIPNCAATRHGHIILNGSGPVF--MKPPSLSNWPKIKFTTNNKKFHYVNLN-TLTK--KEVSSWRSGEILL  301 (440)
Q Consensus       227 ~H~As~PVaV~~~C~a~R~~~~~i~~~g~~~--l~~~~~~~~p~~~~~~~~~~~~~i~l~-p~~~--e~v~~L~vGD~V~  301 (440)
                      ||+||+|||||+||||+||++++|++||++.  |+++|.++||+++++..+.+.++|+|+ |+++  +++++|++||+||
T Consensus       304 ~H~AslPVAVni~C~a~R~~~~~i~~dg~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~L~tPl~~~~~~i~~L~vGD~V~  383 (536)
T PRK15389        304 RHGASCPVGIGVSCSADRNIKAKITRDGIFLEQLETNPARYLPEVLREKLEGEVVKIDLNRPMAEILAELSKYPVKTRLS  383 (536)
T ss_pred             CcccCCceEEEcCchhhcCceEEECCCcceeeccCCCChHhChhhhhhccCCceEEEEecCCCchhHHHHhhCCCCCEEE
Confidence            9999999999999999999999999999997  999999999999987653335555552 8987  7999999999999


Q ss_pred             EeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCCcceeeccccccccchhhHHHHHHHhCceEEEecc
Q psy3775         302 LNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRNEVIGPAGPTTASRMDHFTNLILEKIGLIAMIGKA  381 (440)
Q Consensus       302 LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g~~igs~GPTTS~RMd~y~~~~l~~~Gv~~~IGKG  381 (440)
                      |||+|||+||+||+||++++++|++||+||+|++||||||+++++|+.++|+|||||+|||+|+|.|++++|+++|||||
T Consensus       384 LsG~i~taRDaaHkrl~e~~~~G~~lP~dl~g~~Iyh~GP~~~~~g~~igs~GPTTS~RMd~~~~~ll~~~G~~~~IGKG  463 (536)
T PRK15389        384 LTGTIIVARDIAHAKLKERLDAGEGLPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQAAGGSMVMLAKG  463 (536)
T ss_pred             EEEEEEEEehHHHHHHHHHHhcCCCCCcCcCCCEEEEecCCCCCCCceeeeeCCchHHHhhhhHHHHHHhcCcEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             cCCHHHHHHHHhcCeEEEEccchHHHHHH-hhceeeeeecccCCCceeEEEEEEeccCCC
Q psy3775         382 ERSDKIIKLIKKQKIAYLVAVGGAAYLIS-KAIKSAKIICFEDLGMEAIYEFNVENMPVT  440 (440)
Q Consensus       382 ~~~~~~~~a~~~~gavYl~~~GGaaal~a-~~Ik~v~~v~~~dLG~EAi~~leVe~fP~~  440 (440)
                      +||+++++||++||+|||+++|||||+++ ++||++++|+|+||||||+|+|+|+|||+|
T Consensus       464 ~~~~~~~ea~k~~gavYl~~~GG~aA~l~a~~Ik~v~~V~~~dLG~EAi~~leV~dfP~i  523 (536)
T PRK15389        464 NRSQQVTDACKKHGGFYLGSIGGPAARLAQDCIKKVEVLEYPELGMEAVWKIEVEDFPAF  523 (536)
T ss_pred             CCCHHHHHHHHHcCEEEEEcCcHHHHHHHHhhccEEEEeeccccCccEEEEEEEecCCeE
Confidence            99999999999999999999999999776 999999999999999999999999999985

>PRK15392 putative fumarate hydratase; Provisional Back     alignment and domain information
>PTZ00226 fumarate hydratase; Provisional Back     alignment and domain information
>PLN00133 class I-fumerate hydratase; Provisional Back     alignment and domain information
>PRK15390 fumarate hydratase FumA; Provisional Back     alignment and domain information
>PRK15391 fumarate hydratase FumB; Provisional Back     alignment and domain information
>PRK08230 tartrate dehydratase subunit alpha; Validated Back     alignment and domain information
>PRK06246 fumarate hydratase; Provisional Back     alignment and domain information
>TIGR00722 ttdA_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region Back     alignment and domain information
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4 Back     alignment and domain information
>COG1951 TtdA Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain [Energy production and conversion] Back     alignment and domain information
>PF05683 Fumerase_C: Fumarase C-terminus; InterPro: IPR004647 This entry represents various Fe-S type hydro-lyases, including the beta subunit from both L-tartrate dehydratase (TtdB; EC:4 Back     alignment and domain information
>PRK06842 fumarate hydratase; Provisional Back     alignment and domain information
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion] Back     alignment and domain information
>PRK06043 fumarate hydratase; Provisional Back     alignment and domain information
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated Back     alignment and domain information
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region Back     alignment and domain information
>PRK08395 fumarate hydratase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
2isb_A192 Crystal Structure Of Fumarase Of Fum-1 (Np_069927.1 7e-11
>pdb|2ISB|A Chain A, Crystal Structure Of Fumarase Of Fum-1 (Np_069927.1) From Archaeoglobus Fulgidus At 1.66 A Resolution Length = 192 Back     alignment and structure 
Iteration: 1

 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 286 LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPV 345
           L K ++   + G+++ + G+I T RD AH R      +G+++P +F+  V+Y+ GP+   
Sbjct: 23  LVKDQILKLKVGDVVYITGEIFTARDEAHARALEWXEEGKELPFSFDKGVVYHCGPLVKK 82
Query: 346 RNEV-IGPAGPTTASRMDHFTNLILEKI 372
            +E  +  AGPTT++R + FT  ILEK+
Sbjct: 83  NDEWRVVSAGPTTSARXNPFTPKILEKV 110
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
2isb_A192 Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, s 6e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1 Length = 192 Back     alignment and structure
 Score =  182 bits (464), Expect = 6e-56
 Identities = 58/164 (35%), Positives = 97/164 (59%), Gaps = 5/164 (3%)

Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
             L T L K ++   + G+++ + G+I T RD AH R    + +G+++P +F+  V+Y+ 
Sbjct: 17  YELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHC 76

Query: 340 GPINPVRNE-VIGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAY 398
           GP+    +E  +  AGPTT++RM+ FT  ILEK+  + +IGK   S+++++ ++  K AY
Sbjct: 77  GPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRG-KAAY 135

Query: 399 LVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVT 440
               GGA  L + +IK  K + +EDLGM EA++   VE   P  
Sbjct: 136 FAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCI 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
2isb_A192 Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, s 100.0
>2isb_A Fumarase, FUM-1; NP_069927.1, fumarase of FUM-1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; HET: MSE; 1.66A {Archaeoglobus fulgidus} SCOP: c.8.9.1 Back     alignment and structure
Probab=100.00  E-value=9.6e-67  Score=484.93  Aligned_cols=161  Identities=34%  Similarity=0.605  Sum_probs=155.7

Q ss_pred             eEEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCCC-cceeecccc
Q psy3775         278 FHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVRN-EVIGPAGPT  356 (440)
Q Consensus       278 ~~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~g-~~igs~GPT  356 (440)
                      .+++++ |+++|++++|++||+|||||+||||||+||+||+|+|++|++||+||+|++||||||++++++ +++||+|||
T Consensus        16 ~~~l~~-Plt~e~v~~L~vGD~V~LsG~i~taRDaAHkRl~e~l~~Ge~lP~dl~g~~Iyy~GP~~~k~~~~~igs~GPT   94 (192)
T 2isb_A           16 EYELRT-PLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHCGPLVKKNDEWRVVSAGPT   94 (192)
T ss_dssp             EEEEES-SCCHHHHHHCCTTCEEEEEEEEEECCHHHHHHHHHHHHHTCCCSSCCTTCEEECBCCEEEESSSEEEEECCBC
T ss_pred             EEEeCC-CCCHHHHhhCCCCCEEEEEEEEEEEhHHHHHHHHHHHHcCCCCCcCCCCCEEEEecCCCCCCCCcEeeEECCC
Confidence            456787 999999999999999999999999999999999999999999999999999999999976665 999999999


Q ss_pred             ccccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEEEe
Q psy3775         357 TASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVE  435 (440)
Q Consensus       357 TS~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~leVe  435 (440)
                      ||+|||+|+|.|++++|+++|||||+||+++++||++| +|||+++||||||+|++||++++|+|+|||| ||+|+||||
T Consensus        95 TS~RMd~y~~~ll~~~G~~~mIGKG~r~~~v~~a~k~~-avYl~avGGaaalla~~Ik~v~~v~~~dLGMpEAi~~leVe  173 (192)
T 2isb_A           95 TSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRGK-AAYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVE  173 (192)
T ss_dssp             BGGGGTTTHHHHHHHCSCEEEEEBSCCCHHHHHHHTTT-EEEEEECSCSSTTGGGGEEEEEEEECGGGCTTTSEEEEEEE
T ss_pred             chhhhhhhHHHHHHhCCcEEEEECCCCCHHHHHHHHhC-eEEEEcCcHHHHHHHhheeEEEEEeeccCCCccEEEEEEEE
Confidence            99999999999999889999999999999999999999 9999999999999999999999999999997 999999999


Q ss_pred             cc-CCC
Q psy3775         436 NM-PVT  440 (440)
Q Consensus       436 ~f-P~~  440 (440)
                      || |+|
T Consensus       174 dfGP~i  179 (192)
T 2isb_A          174 RFGPCI  179 (192)
T ss_dssp             EEEEEE
T ss_pred             eeeeEE
Confidence            99 985

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 440
d2isba1178 c.8.9.1 (A:2-179) Fumarate hydratase class I beta 5e-53
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]} Length = 178 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: FumA C-terminal domain-like
family: FumA C-terminal domain-like
domain: Fumarate hydratase class I beta subunit
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  173 bits (440), Expect = 5e-53
 Identities = 58/164 (35%), Positives = 97/164 (59%), Gaps = 5/164 (3%)

Query: 281 VNLNT-LTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYV 339
             L T L K ++   + G+++ + G+I T RD AH R    + +G+++P +F+  V+Y+ 
Sbjct: 4   YELRTPLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHC 63

Query: 340 GPINPVRNEV-IGPAGPTTASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAY 398
           GP+    +E  +  AGPTT++RM+ FT  ILEK+  + +IGK   S+++++ ++  K AY
Sbjct: 64  GPLVKKNDEWRVVSAGPTTSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMRG-KAAY 122

Query: 399 LVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVENM-PVT 440
               GGA  L + +IK  K + +EDLGM EA++   VE   P  
Sbjct: 123 FAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVERFGPCI 166

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d2isba1178 Fumarate hydratase class I beta subunit {Archaeogl 100.0
>d2isba1 c.8.9.1 (A:2-179) Fumarate hydratase class I beta subunit {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: FumA C-terminal domain-like
family: FumA C-terminal domain-like
domain: Fumarate hydratase class I beta subunit
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.9e-65  Score=470.74  Aligned_cols=161  Identities=34%  Similarity=0.606  Sum_probs=153.9

Q ss_pred             eEEEEcCCCCHHHHhcCCCCCEEEEeEEEEeeehHHHHHHHHHHHcCCCCCcccCCCeEEEeCcCCCCC-Ccceeecccc
Q psy3775         278 FHYVNLNTLTKKEVSSWRSGEILLLNGKILTGRDAAHNRIQYMLSKGEKIPVNFNNRVIYYVGPINPVR-NEVIGPAGPT  356 (440)
Q Consensus       278 ~~~i~l~p~~~e~v~~L~vGD~V~LsG~i~taRDaaH~rl~e~l~~g~~lP~dl~g~~iyh~GP~~~~~-g~~igs~GPT  356 (440)
                      .++|++ |+++|++++|++||+|||||+||||||+|||||+|+|++|++||+||+|++||||||+++++ +..++|+|||
T Consensus         3 ~~~L~t-Plt~e~i~~L~vGD~V~LsG~i~taRD~AHkrl~e~l~~g~~lP~dl~g~~iyy~GP~~~~~~~~~~gs~GPT   81 (178)
T d2isba1           3 EYELRT-PLVKDQILKLKVGDVVYITGEIFTARDEAHARALEWMEEGKELPFSFDKGVVYHCGPLVKKNDEWRVVSAGPT   81 (178)
T ss_dssp             EEEEES-SCCHHHHHHCCTTCEEEEEEEEEECCHHHHHHHHHHHHHTCCCSSCCTTCEEECBCCEEEESSSEEEEECCBC
T ss_pred             eEEcCC-CCCHHHHhhCCCCCEEEEeeEEEEEhHHHHHHHHHHHHcCCCCCcchhcCeEEEecCCCCCCCCeeeeecCCc
Confidence            367888 99999999999999999999999999999999999999999999999999999999987665 4569999999


Q ss_pred             ccccchhhHHHHHHHhCceEEEecccCCHHHHHHHHhcCeEEEEccchHHHHHHhhceeeeeecccCCCc-eeEEEEEEe
Q psy3775         357 TASRMDHFTNLILEKIGLIAMIGKAERSDKIIKLIKKQKIAYLVAVGGAAYLISKAIKSAKIICFEDLGM-EAIYEFNVE  435 (440)
Q Consensus       357 TS~RMd~y~~~~l~~~Gv~~~IGKG~~~~~~~~a~~~~gavYl~~~GGaaal~a~~Ik~v~~v~~~dLG~-EAi~~leVe  435 (440)
                      ||+|||+|+|.||+++|+++|||||+||++++++|| +++|||+++||||||++++||++++|+|+|||| ||+|+||||
T Consensus        82 TS~RMd~y~~~~l~~~G~~~~IGKG~rs~~v~~a~k-~~~vYl~~~GGaaaLl~~~Ik~v~~v~~~dLGmpEAi~~leVe  160 (178)
T d2isba1          82 TSARMNPFTPKILEKVECMGIIGKGGMSEEVVEAMR-GKAAYFAFTGGAGALAAMSIKKVKGVVWEDLGMPEAVWLLEVE  160 (178)
T ss_dssp             BGGGGTTTHHHHHHHCSCEEEEEBSCCCHHHHHHHT-TTEEEEEECSCSSTTGGGGEEEEEEEECGGGCTTTSEEEEEEE
T ss_pred             hHHHHHHHHHHHHHhhCeEEEEeeccCChhHHHHHh-cCcEEEEeCcHHHHHHHhhccEEEEEecccCCCcceEEEEEEe
Confidence            999999999999999999999999999999999996 578999999999999999999999999999997 999999999


Q ss_pred             cc-CCC
Q psy3775         436 NM-PVT  440 (440)
Q Consensus       436 ~f-P~~  440 (440)
                      || |+|
T Consensus       161 dFgP~i  166 (178)
T d2isba1         161 RFGPCI  166 (178)
T ss_dssp             EEEEEE
T ss_pred             eccceE
Confidence            99 985